BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008892
(549 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2
SV=1
Length = 571
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 218/550 (39%), Positives = 287/550 (52%), Gaps = 70/550 (12%)
Query: 8 NAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEK 67
N +++IGSFISLISKYEIRYEG+LYHLNV DST+GLKNV+S GTEGRKKDGPQ+ P +K
Sbjct: 28 NVGDTFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDK 87
Query: 68 VYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYA--GISTNSPLLSSVVGKTL 125
VY+YILFRGSDIKDL+V SP Q ++I + + QS ++ ++ +SP+ G L
Sbjct: 88 VYDYILFRGSDIKDLQVNPSPSAQSRQEIQSEQDVNQSPHSRPAMTMSSPISGYDSGYGL 147
Query: 126 TESSSWQDTPTLTSK------------------ASAGSLLSHQPGTQVSQFSHPQAAQNA 167
S W +TP L+SK A+AGSL S S + Q+
Sbjct: 148 GRGSQWINTPALSSKPVPVTQHSSVPLSFQPPSANAGSLTE-------SPVSLIDSTQSN 200
Query: 168 ASPSFPLPIYWQGYNGPSNNISPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASE 227
A S P+P + QG S+ + Q VSS T PN + SP +G V S
Sbjct: 201 AGSSMPIPSFVQGNKFASSGVPLGMMQ--KPVSSSSTIPNGPQIIDYFSSPIMGLVDDSS 258
Query: 228 SAAHQSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSV 287
+SP ++ N ++SS+P P+ + P AS LS + + PN +
Sbjct: 259 QVVTRSPDVSS---NQSYSSNPSPLGQTQLHTPPGLASVSSNLSPPSEAQL-SAPNIQKI 314
Query: 288 PSSCPDTKATEAQISGRAVPGPAHSAQTMNYPTSSF------LGSASGPLLSPSPSLLTP 341
S P Q G+ V P N+P S + S S P++ P P +P
Sbjct: 315 YPSAP-------QAIGKVVYDPQS-----NHPHRSIPHELPAVASNSAPVI-PGPLSKSP 361
Query: 342 GQLVTSRPPVLSSTQAMYPDKKDMAAMLPSSFNSPAAISPPVTQLPLLPLPTPNLQSQSQ 401
P + S Q +Y ++ AA P+S N P+ P PLLPLP QS+
Sbjct: 362 ESFFDMDPSLQSRQQMVYRGQEMFAATNPASANVPSQSFAPRNHAPLLPLPVSAHQSRIP 421
Query: 402 YSTTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKN 461
S+ ++TEEFDFEAMNEKFKK E+WGYLG+ +N +QN G+E + N
Sbjct: 422 SSSIEYTEEFDFEAMNEKFKKSELWGYLGR-----------NNQRNQNDYGEET-AIEPN 469
Query: 462 GDPKPAYRKDDFFDTISCNSLNRGTREGQ--NRFSERMRLDTETFGNFQQR---ANQGYG 516
+ KPAY KDDFFDTISCN L+R R GQ N+F E MR E FGN QR G G
Sbjct: 470 AEGKPAYNKDDFFDTISCNQLDRVARSGQQHNQFPEHMRQVPEAFGNNFQRPPPLQPGQG 529
Query: 517 GYVAGRGANY 526
Y+A + NY
Sbjct: 530 AYLAAQ-TNY 538
>sp|Q9C658|DCP5_ARATH Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1
Length = 611
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 118/192 (61%), Gaps = 11/192 (5%)
Query: 6 TKNAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPS 65
+ +A +SY+GS ISL SK EIRYEG+LY++N +S+IGL+NV+SFGTEGRKKDGPQV PS
Sbjct: 10 SSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPS 69
Query: 66 EKVYEYILFRGSDIKDLEVKSSPPPQ-KEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKT 124
+KVYEYILFRG+DIKDL+VK+SPP Q I DPAIIQS Y S L S +
Sbjct: 70 DKVYEYILFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGS 129
Query: 125 LTESSSWQDTPTLTSKASAGSLLSHQPGTQVSQFSHPQAAQNAASPSFPLPIYWQGYNGP 184
L + SS P ++ +QPG + + ASP P+ YWQG+ P
Sbjct: 130 LPDISSHNGQPGQHGMGFQNAMPLYQPGGNLGSW--------GASPQPPM--YWQGFYTP 179
Query: 185 SNNISPTPFQSS 196
N P Q S
Sbjct: 180 PPNGLPQLHQQS 191
>sp|Q498K9|L14BB_XENLA Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm14b-b PE=1 SV=1
Length = 380
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 13/138 (9%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK +IRYEG+LY ++ +ST+ L V+SFGTE R D P P E+VYEYI
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTESSSWQ 132
+FRGSDIKD+ V PP+ + QDPAI+QS ++ P + S ++
Sbjct: 66 IFRGSDIKDITV--CEPPKASHALSQDPAIVQSSLGSAASYQPSVP---------YSPFR 114
Query: 133 DTPTLTSKASAGSLLSHQ 150
PT S+ +A SLLS Q
Sbjct: 115 GMPTY-SQLAATSLLSQQ 131
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 20/110 (18%)
Query: 406 KFTEEFDFEAMNEKFKKDEVWGYLGKAK---QSGKPETIEDNTAD-----QNSRGK-EAD 456
KF +FDFE+ N +F ++E+ K K + KPE + D QNS G E D
Sbjct: 243 KFEGDFDFESANAQFNREELDKEF-KDKLNFKDDKPEKAGEEKTDSGVETQNSDGNPEED 301
Query: 457 GLVKNGDPKPAY-RKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
L P Y R FFD IS +R T ++E +L+TETFG
Sbjct: 302 PL----GPNTYYDRSKSFFDNISSEMKSRRT-----TWAEERKLNTETFG 342
>sp|Q566L7|LS14B_XENTR Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1
Length = 382
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 88/138 (63%), Gaps = 11/138 (7%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK +IRYEG+LY ++ +ST+ L V+SFGTE R D P P E+VYEYI
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTESSSWQ 132
+FRGSDIKD+ V PP+ + QDPAI+QS G + ++ SSV S ++
Sbjct: 66 IFRGSDIKDITV--CEPPKASHALPQDPAIVQSSL-GSAPSASYQSSV------PYSPFR 116
Query: 133 DTPTLTSKASAGSLLSHQ 150
PT S+ +A SLLS Q
Sbjct: 117 GMPTY-SQLAASSLLSQQ 133
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 406 KFTEEFDFEAMNEKFKKDEV-------WGYLGKAKQSGKPETIEDNTADQNSRGK-EADG 457
KF +FDFE N +F ++E+ + + + E + QNS G E D
Sbjct: 245 KFEGDFDFETANAQFNREELDKEFKDKLNFKDEKPEKEGEEKTDSGVETQNSDGNPEEDP 304
Query: 458 LVKNGDPKPAY-RKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
L P Y R FFD IS +R T ++E +L+TETFG
Sbjct: 305 L----GPNIYYDRSKSFFDNISSEMKSRRT-----TWAEERKLNTETFG 344
>sp|Q68FI1|L14BA_XENLA Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-a PE=1 SV=1
Length = 422
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK +IRYEG+LY ++ +ST+ L V+SFGTE R D P P E+VYEYI
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQS 105
+FRGSDIKD+ V PP+ + QDPAI+QS
Sbjct: 66 IFRGSDIKDITV--CEPPKASHALPQDPAIVQS 96
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 406 KFTEEFDFEAMNEKFKKDEV-------WGYLGKAKQSGKPETIEDNTADQNSRGK-EADG 457
KF +FDFE N +F ++E+ + + + E + QNS G E D
Sbjct: 285 KFEGDFDFETANAQFNREELDKEFKDKLNFKEEKPEKEGEEKTDSGVETQNSDGNPEEDP 344
Query: 458 LVKNGDPKPAY-RKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
L P Y R FFD IS +R T ++E +L+TETFG
Sbjct: 345 L----GPNTYYDRSKSFFDNISSEMKSRRT-----TWAEERKLNTETFG 384
>sp|Q8CGC4|LS14B_MOUSE Protein LSM14 homolog B OS=Mus musculus GN=Lsm14b PE=2 SV=3
Length = 385
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
Y+GS ISLISK +IRYEG+LY ++ +ST+ L V+SFGTE R D P P E++YEYI
Sbjct: 9 YLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRP-APPREEIYEYI 67
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQS 105
+FRGSDIKD+ V PP+ + + QDPAI+QS
Sbjct: 68 IFRGSDIKDITV--CEPPKAQHTLPQDPAIVQS 98
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 24/115 (20%)
Query: 403 STTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKNG 462
+T KF +FDFE+ N +F ++E+ K+ K +D+ AD +G+E D V
Sbjct: 245 NTIKFEGDFDFESANAQFNREEL------DKEFKKKLNFKDDKAD---KGEEKDPAVMAQ 295
Query: 463 DPKPAYRKD------------DFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
+ A +D FFD IS + L +R + ++E +L+TETFG
Sbjct: 296 SEETAAEEDLLGPNCYYDKSKSFFDNIS-SELKTSSR--RTTWAEERKLNTETFG 347
>sp|Q9BX40|LS14B_HUMAN Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1
Length = 385
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
Y+GS ISLISK +IRYEG+LY ++ +ST+ L V+SFGTE R D P P E++YEYI
Sbjct: 9 YLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRP-APPREEIYEYI 67
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQS 105
+FRGSDIKD+ V PP+ + + QDPAI+QS
Sbjct: 68 IFRGSDIKDITV--CEPPKAQHTLPQDPAIVQS 98
Score = 38.9 bits (89), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 24/115 (20%)
Query: 403 STTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEAD-GLVKN 461
+T KF +FDFE+ N +F ++E+ K+ K +D+ A+ +G+E D +V
Sbjct: 245 NTIKFEGDFDFESANAQFNREEL------DKEFKKKLNFKDDKAE---KGEEKDLAVVTQ 295
Query: 462 GDPKPA----------YRK-DDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
PA Y K FFD IS + L +R + ++E +L+TETFG
Sbjct: 296 SAEAPAEEDLLGPNCYYDKSKSFFDNIS-SELKTSSR--RTTWAEERKLNTETFG 347
>sp|Q8ND56|LS14A_HUMAN Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3
Length = 463
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L V+SFGTE R D P + P ++V+EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQ 104
+FRGSDIKDL V P PQ + QDPAI+Q
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQ 95
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 406 KFTEEFDFEAMNEKFKKDEVWGYL--------GKAKQSGKPETIEDN----TADQNSRG- 452
KF ++FDFE+ N +F K+E+ K ++ KP ED QNS G
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 453 -KEADGLVKNGDPKPAYRK-DDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
E D L P Y K FFD ISC+ RE + ++E RL+ ETFG
Sbjct: 351 ADEEDPL----GPNCYYDKTKSFFDNISCDD----NRERRPTWAEERRLNAETFG 397
>sp|Q5R4R4|LS14A_PONAB Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1
Length = 463
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L V+SFGTE R D P + P ++V+EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQ 104
+FRGSDIKDL V P PQ + QDPAI+Q
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQ 95
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 406 KFTEEFDFEAMNEKFKKDEVWGYL--------GKAKQSGKPETIEDN----TADQNSRG- 452
KF ++FDFE+ N +F K+E+ K ++ KP ED QNS G
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 453 -KEADGLVKNGDPKPAYRK-DDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
E D L P Y K FFD ISC+ RE + ++E RL+ ETFG
Sbjct: 351 ADEEDPL----GPNCYYDKTKSFFDNISCDD----NRERRPTWAEERRLNAETFG 397
>sp|Q8AVJ2|L14AB_XENLA Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1
Length = 471
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L V+SFGTE R D P + P ++V+EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQ 104
+FRGSDIKDL V P PQ + QDPAI+Q
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQ 95
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 406 KFTEEFDFEAMNEKFKKDEV-WGYLGKAK-QSGKPE---TIEDNTAD----QNSRGKEAD 456
KF ++FDFE+ N +F K+++ + K K + KPE ED T QNS G +
Sbjct: 294 KFEKDFDFESANAQFNKEDIDREFHNKLKLKDDKPEKPLNGEDKTDSGVDTQNSEGHAEE 353
Query: 457 GLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
V + FFD+ISC+ NR R+ ++E R++ ETFG
Sbjct: 354 EDVLAAGVCYYDKTKSFFDSISCDD-NRDRRQT---WAEERRMNAETFG 398
>sp|Q3MHF8|LS14A_BOVIN Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1
Length = 463
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L V+SFGTE R D P + P ++V+EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQ 104
+FRGSDIKDL V P PQ + QDPAI+Q
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQ 95
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 406 KFTEEFDFEAMNEKFKKDEVWGYL--------GKAKQSGKPETIEDN----TADQNSRG- 452
KF ++FDFE+ N +F K+E+ K ++ KP ED QNS G
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 453 -KEADGLVKNGDPKPAYRK-DDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
E D L P Y K FFD ISC+ RE + ++E RL+ ETFG
Sbjct: 351 ADEEDPL----GPNCYYDKTKSFFDNISCDD----NRERRPTWAEERRLNAETFG 397
>sp|Q6NVR8|LS14A_XENTR Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1
Length = 469
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L V+SFGTE R D P + P ++V+EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQ 104
+FRGSDIKDL V P PQ + QDPAI+Q
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQ 95
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 406 KFTEEFDFEAMNEKFKKDEV-WGYLGKAK-QSGKPE---TIEDNTAD----QNSRGKEAD 456
KF ++FDFE+ N +F K+E+ + K K + KPE ED T QNS G +
Sbjct: 294 KFEKDFDFESANAQFNKEEIDREFHNKLKLKDDKPEKPVNGEDKTDSGVDTQNSEGNAEE 353
Query: 457 GLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
V G + FFD ISC+ NR R+ +SE R++ ETFG
Sbjct: 354 DDVLAGGVCYYDKTKSFFDNISCDD-NRDRRQT---WSEERRINAETFG 398
>sp|A0A8M2|L14AA_XENLA Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-a PE=1 SV=1
Length = 471
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L V+SFGTE R D P + P ++++EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEIFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQ 104
+FRGSDIKDL V P PQ + QDPAI+Q
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQ 95
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 406 KFTEEFDFEAMNEKFKKDEVWGYLG-----KAKQSGKPETIEDNTAD----QNSRGKEAD 456
KF ++FDFE+ N +F K+E+ K + KP ED T QNS G +
Sbjct: 295 KFEKDFDFESANAQFNKEEIDREFHNKLKIKDDKPEKPVNGEDKTDSVVDTQNSEGNAEE 354
Query: 457 GLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
V G + FFD ISC+ NR R+ ++E R++ ETFG
Sbjct: 355 EEVLAGGVCYYDKTKSFFDNISCDD-NRDRRQT---WAEERRINVETFG 399
>sp|Q8K2F8|LS14A_MOUSE Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1
Length = 462
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L V+SFGTE R D P + P ++V+EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAI 102
+FRGSDIKDL V P PQ + QDPAI
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAI 93
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 406 KFTEEFDFEAMNEKFKKDEVWGYL--------GKAKQSGKPETIEDN----TADQNSRG- 452
KF ++FDFE+ N +F K+E+ K ++ KP ED QNS G
Sbjct: 290 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 349
Query: 453 -KEADGLVKNGDPKPAYRK-DDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
E D L P Y K FFD ISC+ RE + ++E RL+ ETFG
Sbjct: 350 ADEEDPL----GPNCYYDKTKSFFDNISCDD----NRERRPTWAEERRLNAETFG 396
>sp|Q9YH12|LSM14_PLEWA Protein LSM14 homolog OS=Pleurodeles waltl GN=lsm14 PE=1 SV=1
Length = 467
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
YIGS ISLISK EIRYEG+LY ++ +ST+ L GTE R D P + P ++V+EYI
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVVLAKFALLGTEDRPTDRP-IPPRDEVFEYI 65
Query: 73 LFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQ 104
+FRGSDIKDL V P PQ + QDPAI+Q
Sbjct: 66 IFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQ 95
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 406 KFTEEFDFEAMNEKFKKDEV-WGYLGKAK-QSGKPETIED--NTADQNSRGKEADGLVKN 461
KF ++FDFE+ N +F K+E+ + K K + KPE +E N D+ G + N
Sbjct: 295 KFEKDFDFESANAQFTKEEIDREFHNKLKLKDDKPEKVEKPVNGEDKGDSGIDTQNSEGN 354
Query: 462 GDPKPAY-------RKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFG 505
D + A + FFD ISC+ RE + ++E R++ ETFG
Sbjct: 355 ADEEEALASNCYYDKTKSFFDNISCDD----NRERRQTWAEERRINAETFG 401
>sp|Q9HGL3|SUM2_SCHPO Protein sum2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sum2 PE=2 SV=1
Length = 426
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 69/100 (69%), Gaps = 11/100 (11%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVL-PSEKVYEY 71
+IGS ISLISK +IRY G+L +N DST+ LK+V+ GTEGRK+D Q + PS+ V++Y
Sbjct: 4 FIGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDY 63
Query: 72 ILFRGSDIKDLEVK------SSPPPQKEEQIYQDPAIIQS 105
I+FRGSD+KDL ++ S+PP Q DPAII S
Sbjct: 64 IVFRGSDVKDLRIEEPATTPSAPPVQPPN----DPAIIGS 99
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 49/131 (37%), Gaps = 46/131 (35%)
Query: 398 SQSQYSTTKFTEEFDFEAMNEKFK--KDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEA 455
+Q S K EFDF+ N+KF+ KD+ L K K +EA
Sbjct: 295 TQPDASAAKPRTEFDFQTANQKFQSMKDD----LLKGKND-----------------EEA 333
Query: 456 DGLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNR-FSERMR-LDTETFGNFQQRANQ 513
+ K K FFD ISC S +G R +R R L+ ETFG
Sbjct: 334 EEFYK--------PKQSFFDNISCESKEKGMEAADRRALRDRERSLNMETFG-------- 377
Query: 514 GYGGYVAGRGA 524
VAG G
Sbjct: 378 -----VAGSGN 383
>sp|P45978|SCD6_YEAST Protein SCD6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCD6 PE=1 SV=1
Length = 349
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGP-QVLPSEKVYEY 71
YIG ISLIS + RY G+L ++ T+ LK V+ FGTEGRK GP ++ P+ VY
Sbjct: 4 YIGKTISLISVTDNRYVGLLEDIDSEKGTVTLKEVRCFGTEGRKNWGPEEIYPNPTVYNS 63
Query: 72 ILFRGSDIKDLEV 84
+ F GS++KDL +
Sbjct: 64 VKFNGSEVKDLSI 76
>sp|O65704|FBK83_ARATH Putative F-box/kelch-repeat protein At4g19330 OS=Arabidopsis
thaliana GN=At4g19330 PE=4 SV=1
Length = 537
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 22/104 (21%)
Query: 12 SYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKN---------------------VKSF 50
S IG F++++S +IRYEGV+ LN+ DS +GL+N V+ +
Sbjct: 18 SMIGKFVAVMSNNDIRYEGVISLLNLQDSKLGLQNGNNSIPNPLQDLLFMIFFFSIVRVY 77
Query: 51 GTEGRKKDGPQVLPSEK-VYEYILFRGSDIKDLEVKSSPPPQKE 93
G E + +V K V+ +++FRGSDIK +EV S PPP +
Sbjct: 78 GREVENDNEQRVFQVLKEVHSHMVFRGSDIKSVEVLSLPPPARH 121
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 12 SYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEY 71
S IG SLI+ ++R EGV+ H+ DS I +KN +GTEGR K ++ ++ +
Sbjct: 123 SAIGHVGSLITTEDVRIEGVISHVKFHDSMIFMKNCMCYGTEGRTKRRRSIVACNQLADD 182
Query: 72 ILF 74
I+
Sbjct: 183 IVL 185
>sp|Q1E891|ATG13_COCIM Autophagy-related protein 13 OS=Coccidioides immitis (strain RS)
GN=ATG13 PE=3 SV=1
Length = 980
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 176 IYWQGYNGPSNNISP----TPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASESAAH 231
I Q + P + SP +P S S+P GP I +S P G+ T S +AH
Sbjct: 432 ISIQPFKAPPLSASPALVDSPVGSQPKNSAPRVGPMDITSSARQMPPPHGTPTTSRRSAH 491
Query: 232 QSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASF---KGPLSSTAAYMTDNNPN 283
++ S + + S SP PAP++ + +SF +G LSS A TD++ N
Sbjct: 492 ----VSESAIASSTSGSP-----RPAPISKYSSSFSHRRGRLSSGGASKTDDDNN 537
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,129,337
Number of Sequences: 539616
Number of extensions: 10571744
Number of successful extensions: 37015
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 1274
Number of HSP's that attempted gapping in prelim test: 30664
Number of HSP's gapped (non-prelim): 5644
length of query: 549
length of database: 191,569,459
effective HSP length: 123
effective length of query: 426
effective length of database: 125,196,691
effective search space: 53333790366
effective search space used: 53333790366
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)