BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008894
(549 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis
thaliana GN=MBD13 PE=2 SV=1
Length = 746
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 148/280 (52%), Gaps = 47/280 (16%)
Query: 16 RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
+VE+RVRKNG+KDK+I+EK GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct: 15 KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQS 74
Query: 75 MKDAVRYVETGEIG-----------------------RLAY---KPKDDGNQDEEDLED- 107
KDA RYVETG IG RL Y + DD + E+ ++D
Sbjct: 75 FKDASRYVETGNIGHYARKLKESDIEDDDSGNGKTVLRLEYVDKRSADDVLEKEKTIDDV 134
Query: 108 ----DKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDE---DALDSAVEAGTELRGS 160
++ S + + ++T + +TSQ L ++ K E D ++ + A R
Sbjct: 135 RRSKRRNLSSSDEHSKNCKMTSDLSIVTSQV--LEDLGKKEEVKDPIEKQLIAKRVTRSQ 192
Query: 161 NLSEAKDSDKMDYRKD-------SDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKS 213
+ + +D +++ S+K+ +++ V P+ ++ E ++ + +S
Sbjct: 193 TKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKEEEEQDSSEKRITRS 252
Query: 214 MSRKKK---VFDLPRRASKRLAGLALDPTPELKTSNRVRR 250
+KK + RR SKRLAG+ L+PTPELKT +V+R
Sbjct: 253 KVEEKKNELSNSVARRTSKRLAGIELEPTPELKTRAKVQR 292
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 60/124 (48%), Gaps = 23/124 (18%)
Query: 355 SPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKR 414
S D DL DPCIAFAIKTLTGE+ L A
Sbjct: 595 SSAFDSTLADLCKDPCIAFAIKTLTGESL--------------------CLLNTPAISSN 634
Query: 415 ENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIP 474
KQ+ ++ + E NV + EKL P P A+IW+DPCI+FAIKTLTGAIP
Sbjct: 635 PINNHTKQKGVSFTPETPGNVNT---CSEKLVFPSPPPGANIWQDPCIDFAIKTLTGAIP 691
Query: 475 VGND 478
+G D
Sbjct: 692 IGLD 695
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 440 KTDEKLENPLDLPFADIWRDPCIEFAIKTLTG 471
K+ + D AD+ +DPCI FAIKTLTG
Sbjct: 589 KSTNSFSSAFDSTLADLCKDPCIAFAIKTLTG 620
>sp|Q9SNC0|MBD5_ARATH Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis
thaliana GN=MBD5 PE=1 SV=1
Length = 182
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 38 DGLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
+ LPP W EI+V +G K D +Y +P +G FRS + + Y+E G + + K +
Sbjct: 33 NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92
Query: 97 DGNQDEEDLE 106
+G+ E E
Sbjct: 93 NGDSHSEHSE 102
>sp|Q9LTJ1|MBD6_ARATH Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis
thaliana GN=MBD6 PE=1 SV=1
Length = 225
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 40 LPPGWTKEIKVTKTGRKVRR-DPYYIDPASGYIFRSMKDAVRYVETG 85
LPPGW E K+ +G D YY +P +G FRS + + Y+E G
Sbjct: 81 LPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHG 127
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 39 GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYV 82
LPPGW KE + K+G + D YY P SG FRS RY+
Sbjct: 154 ALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL 197
>sp|Q838L2|RHAA_ENTFA L-rhamnose isomerase OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=rhaA PE=3 SV=1
Length = 428
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 424 NLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDW--DV 481
N+ E + ++L E+L+ D PFADIW C E +P+G DW DV
Sbjct: 356 NVLKEAELIGDFTTRLALTEELK---DFPFADIWNYYCQE-------NHVPIGLDWLTDV 405
Query: 482 QDYFQQQINSSQTQPNNNFCQ 502
Q+Y + + + Q + C+
Sbjct: 406 QEYEKVILPTRQLPTGKDSCR 426
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 39 GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYV 82
LPPGW KE + K+G + D YY P SG FRS RY+
Sbjct: 157 ALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL 200
>sp|Q00566|MECP2_RAT Methyl-CpG-binding protein 2 OS=Rattus norvegicus GN=Mecp2 PE=1
SV=1
Length = 492
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|Q9Z2D6|MECP2_MOUSE Methyl-CpG-binding protein 2 OS=Mus musculus GN=Mecp2 PE=1 SV=1
Length = 484
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|Q95LG8|MECP2_MACFA Methyl-CpG-binding protein 2 OS=Macaca fascicularis GN=MECP2 PE=2
SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|P51608|MECP2_HUMAN Methyl-CpG-binding protein 2 OS=Homo sapiens GN=MECP2 PE=1 SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|A7KAN4|ATG26_PENCW Sterol 3-beta-glucosyltransferase OS=Penicillium chrysogenum
(strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255)
GN=atg26 PE=3 SV=1
Length = 1374
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 45 TKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEED 104
T +I+V +G D Y+ F S +DA Y++ G + ++ QD+ D
Sbjct: 414 TFKIRVIDSGETYAIDEYFFS-----FFDSGQDAFNYIK-GLVNAVSTTTATKEAQDQHD 467
Query: 105 LEDDKDNSPTATKKQ---KLEVTGTETDITSQSTKLSEVAKDEDALDSAVEAGT---ELR 158
++ ++S TA K+Q + V+ + + + S +++ + DS E GT +
Sbjct: 468 IKHQPESSRTAYKRQSVSSVRVSDQRREDSPRKRSSSVGNENQGSADSFAEQGTGSSPII 527
Query: 159 GSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGE 200
S + + ++ +R D V P + L QG+S DVGE
Sbjct: 528 QSMTDTTESASQILHRSD----VFQAPTMRTL-QGRSLDVGE 564
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,308,385
Number of Sequences: 539616
Number of extensions: 9004892
Number of successful extensions: 30796
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 263
Number of HSP's that attempted gapping in prelim test: 29984
Number of HSP's gapped (non-prelim): 986
length of query: 549
length of database: 191,569,459
effective HSP length: 123
effective length of query: 426
effective length of database: 125,196,691
effective search space: 53333790366
effective search space used: 53333790366
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)