Query 008894
Match_columns 549
No_of_seqs 84 out of 86
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 14:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ky8_A Methyl-CPG-binding doma 99.3 1.9E-12 6.7E-17 105.6 4.3 48 36-84 9-57 (72)
2 1d9n_A Methyl-CPG-binding prot 99.3 2.7E-12 9.4E-17 105.7 4.3 48 36-84 7-55 (75)
3 3c2i_A Methyl-CPG-binding prot 99.2 5.8E-12 2E-16 108.5 4.8 48 36-84 20-68 (97)
4 3vxv_A Methyl-CPG-binding doma 99.2 1.1E-11 3.8E-16 100.5 5.1 49 36-85 2-51 (69)
5 1ub1_A MECP2, attachment regio 99.1 3.7E-11 1.3E-15 108.5 4.5 62 21-83 16-81 (133)
6 2kxq_A E3 ubiquitin-protein li 95.2 0.02 6.7E-07 47.4 4.6 54 8-70 7-79 (90)
7 1tk7_A CG4244-PB; WW domain, n 94.9 0.018 6E-07 47.5 3.5 56 6-70 8-80 (88)
8 3c2i_A Methyl-CPG-binding prot 88.9 0.42 1.4E-05 41.3 4.5 20 8-27 21-40 (97)
9 1d9n_A Methyl-CPG-binding prot 88.2 0.25 8.4E-06 40.8 2.5 18 8-25 8-25 (75)
10 2ky8_A Methyl-CPG-binding doma 83.8 0.56 1.9E-05 38.2 2.5 17 10-26 12-28 (72)
11 1ub1_A MECP2, attachment regio 81.2 1.5 5.1E-05 39.9 4.5 19 8-26 35-53 (133)
12 3vxv_A Methyl-CPG-binding doma 77.0 1.3 4.5E-05 35.8 2.5 18 9-26 4-21 (69)
13 2l5f_A PRE-mRNA-processing fac 72.5 2.5 8.4E-05 35.1 3.1 63 8-81 9-87 (92)
14 2ysg_A Syntaxin-binding protei 68.4 3.3 0.00011 29.7 2.6 20 9-30 6-25 (40)
15 1ymz_A CC45; artificial protei 66.1 3.2 0.00011 29.9 2.2 27 37-70 6-32 (43)
16 1wr3_A Ubiquitin-protein ligas 64.3 4 0.00014 28.3 2.3 26 38-70 3-28 (36)
17 1o6w_A PRP40, PRE-mRNA process 64.2 2.6 9E-05 33.1 1.6 50 13-71 2-65 (75)
18 2jv4_A Peptidyl-prolyl CIS/tra 64.2 3 0.0001 32.1 1.8 27 38-70 6-32 (54)
19 1e0m_A Wwprototype; SH3 protot 63.8 4 0.00014 28.2 2.2 25 39-70 3-27 (37)
20 2ysg_A Syntaxin-binding protei 63.4 4.2 0.00014 29.1 2.4 26 37-69 5-30 (40)
21 2ysh_A GAS-7, growth-arrest-sp 62.7 5.4 0.00018 28.2 2.8 27 37-70 5-31 (40)
22 2kyk_A E3 ubiquitin-protein li 62.6 4.3 0.00015 28.7 2.3 27 37-70 4-30 (39)
23 2ysf_A E3 ubiquitin-protein li 62.1 4.3 0.00015 29.2 2.2 26 37-69 5-30 (40)
24 2law_A Yorkie homolog; YAP, SM 60.9 3.4 0.00011 29.3 1.5 26 38-70 5-30 (38)
25 3rpj_A Curlin genes transcript 59.5 5.2 0.00018 36.6 2.8 35 2-39 49-83 (134)
26 1yw5_A Peptidyl prolyl CIS/tra 59.5 4.6 0.00016 36.5 2.5 41 38-84 6-52 (177)
27 1wr4_A Ubiquitin-protein ligas 58.5 6 0.00021 27.1 2.4 26 38-70 3-28 (36)
28 2ysb_A Salvador homolog 1 prot 58.1 4.8 0.00016 30.4 2.0 24 39-69 11-34 (49)
29 2ez5_W Dnedd4, E3 ubiquitin-pr 57.3 5.8 0.0002 29.4 2.3 26 37-69 8-33 (46)
30 2djy_A SMAD ubiquitination reg 56.6 5.3 0.00018 29.1 1.9 25 38-69 6-30 (42)
31 2kpz_A E3 ubiquitin-protein li 56.6 5.3 0.00018 29.8 2.0 26 37-69 10-35 (49)
32 2jmf_A E3 ubiquitin-protein li 55.9 5.5 0.00019 30.6 2.0 26 37-69 16-41 (53)
33 1wr7_A NEDD4-2; all-beta, liga 55.3 7.3 0.00025 27.9 2.5 26 38-70 7-32 (41)
34 2l4j_A YES-associated protein 55.0 6.2 0.00021 29.3 2.1 25 38-69 10-34 (46)
35 2ho2_A Fe65 protein, amyloid b 54.3 6.8 0.00023 28.4 2.1 24 38-69 2-25 (38)
36 2dmv_A Itchy homolog E3 ubiqui 53.8 8 0.00027 28.0 2.5 27 37-70 5-31 (43)
37 1i5h_W Rnedd4, ubiquitin ligas 52.0 8.3 0.00028 29.1 2.4 26 37-69 9-34 (50)
38 2ysd_A Membrane-associated gua 51.8 6.7 0.00023 30.5 1.9 26 37-69 12-37 (57)
39 2dwv_A Salvador homolog 1 prot 49.8 7.6 0.00026 29.3 1.9 26 38-70 12-37 (49)
40 1wmv_A WWOX, WW domain contain 49.3 7.6 0.00026 29.8 1.9 24 38-68 10-33 (54)
41 2ysd_A Membrane-associated gua 45.9 28 0.00095 27.1 4.6 23 6-30 10-32 (57)
42 3l4h_A E3 ubiquitin-protein li 44.9 9.9 0.00034 33.5 2.1 25 37-68 70-94 (109)
43 2ysc_A Amyloid beta A4 precurs 44.8 19 0.00065 26.1 3.3 25 38-70 7-31 (39)
44 2yse_A Membrane-associated gua 42.8 14 0.00047 29.3 2.4 26 37-69 11-36 (60)
45 2kpz_A E3 ubiquitin-protein li 42.5 14 0.00047 27.6 2.3 28 1-30 3-30 (49)
46 2zaj_A Membrane-associated gua 40.5 15 0.00052 27.8 2.3 26 37-69 11-36 (49)
47 3l4h_A E3 ubiquitin-protein li 39.6 17 0.00056 32.1 2.7 21 8-30 70-90 (109)
48 2kxq_A E3 ubiquitin-protein li 37.2 17 0.00057 29.9 2.2 27 37-70 7-33 (90)
49 1wr7_A NEDD4-2; all-beta, liga 37.1 29 0.00099 24.8 3.2 26 2-30 1-26 (41)
50 1jmq_A YAP65, 65 kDa YES-assoc 33.9 17 0.00057 26.5 1.5 11 38-48 7-17 (46)
51 1tk7_A CG4244-PB; WW domain, n 33.9 15 0.00051 30.0 1.4 27 37-70 10-36 (88)
52 3le4_A Microprocessor complex 26.5 23 0.0008 29.9 1.4 54 27-90 13-69 (79)
53 3tc5_A Peptidyl-prolyl CIS-tra 26.2 28 0.00096 31.5 2.0 26 38-69 8-33 (166)
54 3tc5_A Peptidyl-prolyl CIS-tra 24.4 38 0.0013 30.6 2.5 32 9-42 8-40 (166)
No 1
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.27 E-value=1.9e-12 Score=105.59 Aligned_cols=48 Identities=42% Similarity=0.749 Sum_probs=44.2
Q ss_pred CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh
Q 008894 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84 (549)
Q Consensus 36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT 84 (549)
.+.+||+||.+|+++|++|. ..+.|.||++| +|++|||+++|.+||+.
T Consensus 9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr~RS~~ev~~YL~~ 57 (72)
T 2ky8_A 9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGN 57 (72)
T ss_dssp ECSSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCEEESHHHHHHHHTT
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCEeEcHHHHHHHHhc
Confidence 45699999999999999885 56899999999 99999999999999977
No 2
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.26 E-value=2.7e-12 Score=105.71 Aligned_cols=48 Identities=33% Similarity=0.589 Sum_probs=43.6
Q ss_pred CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh
Q 008894 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84 (549)
Q Consensus 36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT 84 (549)
.+..||+||.+|+++|++|. +.+.|.||++| +|++|||+++|.+||+.
T Consensus 7 ~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~ev~ryL~~ 55 (75)
T 1d9n_A 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP 55 (75)
T ss_dssp ECTTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHHHHHHHCT
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHHHHHHhcc
Confidence 46789999999999999986 45899999999 99999999999999963
No 3
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.22 E-value=5.8e-12 Score=108.46 Aligned_cols=48 Identities=40% Similarity=0.743 Sum_probs=43.8
Q ss_pred CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh
Q 008894 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84 (549)
Q Consensus 36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT 84 (549)
.+.+||+||.+|+++|++|. ..+.|.||++| +|++|||+.+|.+||+.
T Consensus 20 ~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~GkkfRSk~ev~ryL~~ 68 (97)
T 3c2i_A 20 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK 68 (97)
T ss_dssp CCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEEECHHHHHHHHHH
Confidence 46689999999999999986 45899999999 89999999999999973
No 4
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.20 E-value=1.1e-11 Score=100.54 Aligned_cols=49 Identities=29% Similarity=0.599 Sum_probs=43.0
Q ss_pred CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhhc
Q 008894 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 85 (549)
Q Consensus 36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeTG 85 (549)
.+..||.||.+|+++|++|. ..+.|.||+.|. |++|||+.+|.+||+.-
T Consensus 2 ~~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~-Gkk~RSk~ev~~yL~~~ 51 (69)
T 3vxv_A 2 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQ-GLKFRSKRSLANYLLKN 51 (69)
T ss_dssp --CCSCTTCEEEEEECCSSTTTTCEEEEEECTT-SCEECSHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEEEeccCCCCCcceEEEEcCC-CCEeeCHHHHHHHHHhC
Confidence 35689999999999999986 568899999995 99999999999999863
No 5
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.10 E-value=3.7e-11 Score=108.48 Aligned_cols=62 Identities=34% Similarity=0.588 Sum_probs=51.5
Q ss_pred EccCCcceeeE-eec--cCCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHh
Q 008894 21 VRKNGKKDKII-IEK--DTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVE 83 (549)
Q Consensus 21 ~~knG~K~K~v-iEr--~~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLe 83 (549)
.+..++..++| +|. +.+.+||.||.+|+++|++|. ..+.|.||+.| +|++|||+.+|.+||+
T Consensus 16 ~~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP-~GKkfRSk~Ev~ryL~ 81 (133)
T 1ub1_A 16 SASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE 81 (133)
T ss_dssp CSCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECT-TSCEESSHHHHHHHHT
T ss_pred ccCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECC-CCCeeeCHHHHHHHHH
Confidence 34456666666 344 357789999999999999985 56899999999 5999999999999997
No 6
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=95.17 E-value=0.02 Score=47.43 Aligned_cols=54 Identities=28% Similarity=0.455 Sum_probs=35.6
Q ss_pred CCCCCCCeeEEEEEccCCcceeeE-------eecc------------CCCCCCCCceEEEEEecCCCcccccccccCCCC
Q 008894 8 DELLPDGCRVEVRVRKNGKKDKII-------IEKD------------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS 68 (549)
Q Consensus 8 ~~WLPdGW~vEvr~~knG~K~K~v-------iEr~------------~~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvs 68 (549)
..=||+|| |++++.+|+.|-|- -|+. ....||.||.... -.. ..+||+|..|
T Consensus 7 ~~~LP~gW--e~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~--~~~-----G~~Yy~n~~t 77 (90)
T 2kxq_A 7 PPDLPEGY--EQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRN--TAT-----GRVYFVDHNN 77 (90)
T ss_dssp CCSCCSSC--EEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEE--CTT-----SCEEEEETTT
T ss_pred CCCCCCCc--EEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEE--CCC-----CCEEEEECCC
Confidence 45699999 56666899988771 1211 1236999998765 222 2479999876
Q ss_pred Cc
Q 008894 69 GY 70 (549)
Q Consensus 69 Gy 70 (549)
+.
T Consensus 78 ~~ 79 (90)
T 2kxq_A 78 RT 79 (90)
T ss_dssp TE
T ss_pred Cc
Confidence 53
No 7
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=94.88 E-value=0.018 Score=47.54 Aligned_cols=56 Identities=23% Similarity=0.518 Sum_probs=36.7
Q ss_pred CCCCCCCCCeeEEEEEccCCcceee-------Eeecc----------CCCCCCCCceEEEEEecCCCcccccccccCCCC
Q 008894 6 NSDELLPDGCRVEVRVRKNGKKDKI-------IIEKD----------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS 68 (549)
Q Consensus 6 ~s~~WLPdGW~vEvr~~knG~K~K~-------viEr~----------~~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvs 68 (549)
....=||+||.+ ++..+|+.|-| .-|.. ....||.||..-. -..| ..||+|..|
T Consensus 8 ~~~~~LP~gWe~--~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~--~~~G-----~~Yy~nh~t 78 (88)
T 1tk7_A 8 DALGPLPDGWEK--KIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRY--TAAG-----ERFFVDHNT 78 (88)
T ss_dssp STTSSSSSSCCE--EEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEE--ETTT-----EEEEEETTT
T ss_pred CccCCCCCCcEE--EECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEE--CCCC-----CEEEEECCC
Confidence 444569999954 55678998877 12221 1346999998765 2222 479999876
Q ss_pred Cc
Q 008894 69 GY 70 (549)
Q Consensus 69 Gy 70 (549)
+.
T Consensus 79 ~~ 80 (88)
T 1tk7_A 79 RR 80 (88)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 8
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=88.88 E-value=0.42 Score=41.34 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=17.0
Q ss_pred CCCCCCCeeEEEEEccCCcc
Q 008894 8 DELLPDGCRVEVRVRKNGKK 27 (549)
Q Consensus 8 ~~WLPdGW~vEvr~~knG~K 27 (549)
+.|||+||..|+++|++|..
T Consensus 21 ~~~lP~GW~re~~~R~~G~s 40 (97)
T 3c2i_A 21 DPTLPEGWTRKLKQRKSGRS 40 (97)
T ss_dssp CTTSCTTCEEEEEECCSSTT
T ss_pred CCCCCCCCEEEEEEecCCCC
Confidence 45799999999999999643
No 9
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=88.20 E-value=0.25 Score=40.77 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=16.2
Q ss_pred CCCCCCCeeEEEEEccCC
Q 008894 8 DELLPDGCRVEVRVRKNG 25 (549)
Q Consensus 8 ~~WLPdGW~vEvr~~knG 25 (549)
.-+||+||..|+++|++|
T Consensus 8 ~p~LP~GW~Re~~~R~~g 25 (75)
T 1d9n_A 8 CPALGPGWKRREVFRKSG 25 (75)
T ss_dssp CTTTCSSCEEEECSSSSS
T ss_pred CCCCCCCCEEEEEEecCC
Confidence 458999999999999996
No 10
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=83.79 E-value=0.56 Score=38.21 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=15.7
Q ss_pred CCCCCeeEEEEEccCCc
Q 008894 10 LLPDGCRVEVRVRKNGK 26 (549)
Q Consensus 10 WLPdGW~vEvr~~knG~ 26 (549)
+||+||..|+++|++|.
T Consensus 12 ~Lp~GW~R~~~~R~~g~ 28 (72)
T 2ky8_A 12 ALPPGWKKEEVIRKSGL 28 (72)
T ss_dssp SSCTTCEEEEEECCSST
T ss_pred CCCCCCEEEEEEecCCC
Confidence 89999999999999873
No 11
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=81.23 E-value=1.5 Score=39.94 Aligned_cols=19 Identities=37% Similarity=0.753 Sum_probs=16.9
Q ss_pred CCCCCCCeeEEEEEccCCc
Q 008894 8 DELLPDGCRVEVRVRKNGK 26 (549)
Q Consensus 8 ~~WLPdGW~vEvr~~knG~ 26 (549)
+.|||+||..|+++|++|.
T Consensus 35 ~~~LP~GWkRe~~~RksG~ 53 (133)
T 1ub1_A 35 DPTLPEGWTRKLKQRKSGR 53 (133)
T ss_dssp CCCBTTBCEEEEEECCCSS
T ss_pred CCCCCCCCEEEEEEecCCC
Confidence 5689999999999999974
No 12
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=76.95 E-value=1.3 Score=35.85 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCCCCCeeEEEEEccCCc
Q 008894 9 ELLPDGCRVEVRVRKNGK 26 (549)
Q Consensus 9 ~WLPdGW~vEvr~~knG~ 26 (549)
-.||.||..|+++|++|.
T Consensus 4 ~plp~GW~R~~~~R~~G~ 21 (69)
T 3vxv_A 4 KPVPCGWERVVKQRLSGK 21 (69)
T ss_dssp CCSCTTCEEEEEECCSST
T ss_pred CcCCCCCEEEEEEeccCC
Confidence 479999999999999864
No 13
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=72.50 E-value=2.5 Score=35.05 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=41.6
Q ss_pred CCCCCCCeeEEEEEccCCcceeeE-------eeccCCC---------CCCCCceEEEEEecCCCcccccccccCCCCCcc
Q 008894 8 DELLPDGCRVEVRVRKNGKKDKII-------IEKDTPD---------GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 71 (549)
Q Consensus 8 ~~WLPdGW~vEvr~~knG~K~K~v-------iEr~~~~---------~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGyk 71 (549)
..=||.||.. ++..+|+.|-|- =|+ |. -||.||..-. -..| -+||++..|+..
T Consensus 9 ~~~lp~~W~e--~~~~~Gr~YYyN~~T~~s~We~--P~~~~~~~e~~~~~~~W~~~~--~~~G-----r~Yy~N~~T~~s 77 (92)
T 2l5f_A 9 ASGAKSMWTE--HKSPDGRTYYYNTETKQSTWEK--PDDLKTPAEQLLSKCPWKEYK--SDSG-----KTYYYNSQTKES 77 (92)
T ss_dssp TTBTTTTEEE--EECTTSCEEEEETTTTEEESSC--SGGGTCHHHHHHHSCSEEEEE--CTTC-----CEEEEETTTTEE
T ss_pred CCCCCCCcEE--EEcCCCCEEEEECCCCceeccc--CccccccccccccccceEEEE--CCCC-----CEEEEECCCCCe
Confidence 4559999974 556699998872 222 22 2678998754 2222 479999999887
Q ss_pred ccchHHHHHH
Q 008894 72 FRSMKDAVRY 81 (549)
Q Consensus 72 FRSkkdV~RY 81 (549)
.-.++..+.-
T Consensus 78 ~We~P~~~~~ 87 (92)
T 2l5f_A 78 RWAKPKELED 87 (92)
T ss_dssp ESCCCHHHHT
T ss_pred eccCchhHhh
Confidence 7666655443
No 14
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=68.43 E-value=3.3 Score=29.69 Aligned_cols=20 Identities=35% Similarity=0.291 Sum_probs=11.3
Q ss_pred CCCCCCeeEEEEEccCCcceee
Q 008894 9 ELLPDGCRVEVRVRKNGKKDKI 30 (549)
Q Consensus 9 ~WLPdGW~vEvr~~knG~K~K~ 30 (549)
.-||+|| |++...+|+.|-|
T Consensus 6 ~~LP~gW--e~~~~~~Gr~Yy~ 25 (40)
T 2ysg_A 6 SGLPYGW--EEAYTADGIKYFI 25 (40)
T ss_dssp SCCCTTE--EEEECSSSCEEEE
T ss_pred CCCCCCc--EEEEcCCCCEEEE
Confidence 3467777 4444566666544
No 15
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=66.10 E-value=3.2 Score=29.87 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=16.9
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
+..||+||.... -.+ ...||++-.|+.
T Consensus 6 ~~~LP~gW~~~~--~~~-----Gr~YY~n~~T~~ 32 (43)
T 1ymz_A 6 SMPLPPGWERRT--DVE-----GKVYYFNVRTLT 32 (43)
T ss_dssp -CCCCSSEEEEE--CTT-----SCEEEEETTTTE
T ss_pred CCCCCCCCEEEE--CCC-----CCEEEEECCCCC
Confidence 457999996654 222 247888877653
No 16
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=64.31 E-value=4 Score=28.26 Aligned_cols=26 Identities=27% Similarity=0.755 Sum_probs=17.0
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
..||+||.... -.. ...||++-.|+.
T Consensus 3 ~~LP~GWe~~~--d~~-----G~~Yy~n~~t~~ 28 (36)
T 1wr3_A 3 PPLPPGWEEKV--DNL-----GRTYYVNHNNRS 28 (36)
T ss_dssp SCSCTTEEEEE--CSS-----SCEEEEETTTCC
T ss_pred CCCCCCCEEEE--CCC-----CCEEEEECCCCC
Confidence 45899998765 122 347888877654
No 17
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=64.17 E-value=2.6 Score=33.12 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=30.0
Q ss_pred CCeeEEEEEccCCcceeeE-------eecc-------CCCCCCCCceEEEEEecCCCcccccccccCCCCCcc
Q 008894 13 DGCRVEVRVRKNGKKDKII-------IEKD-------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 71 (549)
Q Consensus 13 dGW~vEvr~~knG~K~K~v-------iEr~-------~~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGyk 71 (549)
.|| +++.+.+|+.|-|- -|+. ....||.||..-. ...| -.||++..|+..
T Consensus 2 ~~W--~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~--~~~G-----r~Yy~n~~t~~t 65 (75)
T 1o6w_A 2 SIW--KEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAK--TADG-----KVYYYNPTTRET 65 (75)
T ss_dssp CCE--EEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEE--CTTC-----CEEEEETTTTEE
T ss_pred CCC--eEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEE--CCCC-----CEEEEECCCCCE
Confidence 367 55667799998661 1221 0124789995543 3333 379999987654
No 18
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=64.16 E-value=3 Score=32.14 Aligned_cols=27 Identities=37% Similarity=0.898 Sum_probs=17.2
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
..||+||.. |.+.. ....||++..|+.
T Consensus 6 ~~LP~GW~~----~~~~~--~Gr~YY~N~~T~~ 32 (54)
T 2jv4_A 6 TGLPAGWEV----RHSNS--KNLPYYFNPATRE 32 (54)
T ss_dssp CCCCSSCCE----EECSS--SSCEEEEETTTTE
T ss_pred CCCCCCcEE----EEECC--CCCEEEEECCCCc
Confidence 469999984 22221 1247998887664
No 19
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=63.77 E-value=4 Score=28.22 Aligned_cols=25 Identities=40% Similarity=0.906 Sum_probs=16.3
Q ss_pred CCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 39 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 39 ~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
.||+||.... -..| ..||++-.|+.
T Consensus 3 ~LP~gW~~~~--~~~G-----~~Yy~n~~t~~ 27 (37)
T 1e0m_A 3 GLPPGWDEYK--THNG-----KTYYYNHNTKT 27 (37)
T ss_dssp CSCTTEEEEE--CSSC-----CEEEEETTTTE
T ss_pred CCCCCcEEEE--CCCC-----CEEEEECCCCC
Confidence 5899998654 2222 46888876654
No 20
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=63.39 E-value=4.2 Score=29.14 Aligned_cols=26 Identities=35% Similarity=0.770 Sum_probs=17.0
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||...+ ...| ..||+|-.|+
T Consensus 5 ~~~LP~gWe~~~--~~~G-----r~Yy~nh~t~ 30 (40)
T 2ysg_A 5 SSGLPYGWEEAY--TADG-----IKYFINHVTQ 30 (40)
T ss_dssp SSCCCTTEEEEE--CSSS-----CEEEEESSSC
T ss_pred cCCCCCCcEEEE--cCCC-----CEEEEECCCC
Confidence 456999995543 3323 4699987654
No 21
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=62.68 E-value=5.4 Score=28.20 Aligned_cols=27 Identities=30% Similarity=0.829 Sum_probs=16.8
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
...||+||.... -.. ...||++-.|+.
T Consensus 5 ~~~LP~gW~~~~--d~~-----Gr~YY~n~~T~~ 31 (40)
T 2ysh_A 5 SSGLPPGWQSYL--SPQ-----GRRYYVNTTTNE 31 (40)
T ss_dssp CSSCCTTCEEEE--CTT-----SCEEEECSSSCC
T ss_pred CCCCCCCceEEE--CCC-----CCEEEEECCCCC
Confidence 457999995433 222 246888877664
No 22
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=62.57 E-value=4.3 Score=28.73 Aligned_cols=27 Identities=30% Similarity=0.711 Sum_probs=17.8
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
...||+||....- .. ...||++-.|+.
T Consensus 4 ~~~LP~gWe~~~d--~~-----G~~YY~n~~t~~ 30 (39)
T 2kyk_A 4 MGPLPPGWERRVD--NM-----GRIYYVDHFTRT 30 (39)
T ss_dssp SCCCCSSCEEEEC--TT-----SCEEEECSSSCC
T ss_pred cCCCCCCcEEEEc--CC-----CCEEEEECCCCC
Confidence 3469999987651 22 347898877654
No 23
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=62.15 E-value=4.3 Score=29.15 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=15.2
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||.+.+ -.. ...||+|-.|.
T Consensus 5 ~~~LP~gWe~~~--~~~-----G~~Yy~nh~t~ 30 (40)
T 2ysf_A 5 SSGLPEGWEMRF--TVD-----GIPYFVDHNRR 30 (40)
T ss_dssp CCCCCSSEEEEE--CTT-----CCEEEEETTTC
T ss_pred cCCCCcCcEEEE--cCC-----CCEEEEECCCC
Confidence 346888887654 222 24677776544
No 24
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=60.90 E-value=3.4 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.680 Sum_probs=17.3
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
..||+||...+- .+ ...||++-.|+.
T Consensus 5 ~~LP~gWe~~~~--~~-----G~~Yy~nh~t~~ 30 (38)
T 2law_A 5 GPLPDGWEQAMT--QD-----GEIYYINHKNKT 30 (38)
T ss_dssp CCCSSSCCEEEE--TT-----TEEEEEETTTTE
T ss_pred CCCCCCcEEEEC--CC-----CCEEEEECCCCC
Confidence 459999987752 22 247888876653
No 25
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=59.55 E-value=5.2 Score=36.56 Aligned_cols=35 Identities=11% Similarity=-0.009 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCeeEEEEEccCCcceeeEeeccCCCC
Q 008894 2 GDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDG 39 (549)
Q Consensus 2 ~~~e~s~~WLPdGW~vEvr~~knG~K~K~viEr~~~~~ 39 (549)
..||++..| |||+|.....+|=.|+|.+=.|+..|
T Consensus 49 ~aPEkREFW---GWWleL~~~e~~F~y~Y~~Glydk~G 83 (134)
T 3rpj_A 49 VTPEKREFW---GWWMELERNGEQLIYYYQVGLFDKNG 83 (134)
T ss_dssp SCSSSCCEE---EEEEEEEEETTEEEEEEEEEEECTTS
T ss_pred CChhhhhhh---hhheeeeecCCcEEEEEecccccCCC
Confidence 368999999 99999999999999999888876554
No 26
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=59.53 E-value=4.6 Score=36.47 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=27.8
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCccc------cchHHHHHHHhh
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIF------RSMKDAVRYVET 84 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGykF------RSkkdV~RYLeT 84 (549)
.+||+||.+.+ =++ +...||+++.+...= -|-.+|..|++.
T Consensus 6 ~~lp~~w~~~~--s~s----~~~~Yy~~~~~~~~~~~~~~~vs~~ei~~yy~~ 52 (177)
T 1yw5_A 6 TGLPPNWTIRV--SRS----HNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAK 52 (177)
T ss_dssp CCCCTTEEEEE--CSS----TTCEEEEETTTCCEESSCCTTCCHHHHHHHHHH
T ss_pred CCCCchHHHHh--ccc----CCchhhhhHHHhhHhhcCcccCCHHHHHHHHHH
Confidence 57999998766 222 346788888764321 367888888875
No 27
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=58.53 E-value=6 Score=27.05 Aligned_cols=26 Identities=31% Similarity=0.791 Sum_probs=16.9
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
..||+||..-. ...| ..||++-.|+.
T Consensus 3 ~~LP~gWe~~~--d~~g-----~~Yy~n~~t~~ 28 (36)
T 1wr4_A 3 PGLPSGWEERK--DAKG-----RTYYVNHNNRT 28 (36)
T ss_dssp TTCCTTEEEEE--CSSS-----CEEEEETTTTE
T ss_pred CCCCCCCEEEE--CCCC-----CEEEEECCCCC
Confidence 46899997754 2222 35888877654
No 28
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=58.13 E-value=4.8 Score=30.37 Aligned_cols=24 Identities=42% Similarity=0.873 Sum_probs=15.3
Q ss_pred CCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 39 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 39 ~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
.||+||...+ -.. ...||+|-.+.
T Consensus 11 ~LP~gWe~~~--~~~-----Gr~Yy~nh~t~ 34 (49)
T 2ysb_A 11 PLPPGWSVDW--TMR-----GRKYYIDHNTN 34 (49)
T ss_dssp CCCTTEEEEE--CSS-----SCEEEEETTTT
T ss_pred CCCCCceEEE--CCC-----CCEEEEEcCCC
Confidence 5899997765 222 24688876544
No 29
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=57.29 E-value=5.8 Score=29.37 Aligned_cols=26 Identities=35% Similarity=0.848 Sum_probs=15.4
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||...+ -.+| ..||+|-.|+
T Consensus 8 ~~~LP~gWe~~~--~~~G-----r~Yyinh~t~ 33 (46)
T 2ez5_W 8 EEPLPPRWSMQV--APNG-----RTFFIDHASR 33 (46)
T ss_dssp SCCCCTTEEEEE--CTTS-----SEEEEETTTT
T ss_pred CCCCCcCcEEEE--cCCC-----CEEEEECCCC
Confidence 346888887665 2222 4677776544
No 30
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=56.59 E-value=5.3 Score=29.13 Aligned_cols=25 Identities=40% Similarity=0.829 Sum_probs=15.4
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
..||+||.+.+ -..| ..||+|-.|+
T Consensus 6 ~~LP~GWe~~~--~~~G-----~~Yy~nh~t~ 30 (42)
T 2djy_A 6 GPLPPGWEIRN--TATG-----RVYFVDHNNR 30 (42)
T ss_dssp SCCCSSEEEEE--CSSS-----CEEEEETTTT
T ss_pred CCCCcCcEEEE--CCCC-----CEEEEECCCC
Confidence 45888887765 2222 4688876554
No 31
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=56.55 E-value=5.3 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=15.4
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||...+ -.+ ...||+|-.|+
T Consensus 10 ~~~LP~gWe~~~--~~~-----G~~Yy~nh~T~ 35 (49)
T 2kpz_A 10 QGFLPKGWEVRH--APN-----GRPFFIDHNTK 35 (49)
T ss_dssp --CCCTTEEEEE--CTT-----SCEEEEETTTT
T ss_pred CCCCCCCcEEEE--CCC-----CCEEEEECCCC
Confidence 456888887665 222 24688876654
No 32
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=55.90 E-value=5.5 Score=30.57 Aligned_cols=26 Identities=31% Similarity=0.816 Sum_probs=16.4
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||.+.+ -.+| ..||+|-.|.
T Consensus 16 ~~~LP~GWe~~~--~~~G-----r~Yyinh~tk 41 (53)
T 2jmf_A 16 EGPLPPGWEIRY--TAAG-----ERFFVDHNTR 41 (53)
T ss_dssp CSCCCTTEEEEE--CTTS-----CEEEEETTTC
T ss_pred CCCCCcCcEEEE--cCCC-----CEEEEeCCCC
Confidence 346999998765 2222 4688876554
No 33
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=55.31 E-value=7.3 Score=27.93 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=15.3
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
..||+||...+ -.+ ...||++-.|+.
T Consensus 7 ~~LP~gWe~~~--~~~-----G~~Yy~n~~t~~ 32 (41)
T 1wr7_A 7 SFLPPGWEMRI--APN-----GRPFFIDHNTKT 32 (41)
T ss_dssp CSSCTTEEEEE--CTT-----SCEEEEETTTTE
T ss_pred CCCCCCcEEEE--cCC-----CCEEEEECCCCC
Confidence 45788887654 122 246777766543
No 34
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=54.97 E-value=6.2 Score=29.28 Aligned_cols=25 Identities=36% Similarity=0.757 Sum_probs=15.8
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
..||+||...+ -.. ...||+|-.++
T Consensus 10 ~~LP~gWe~~~--~~~-----G~~Yyinh~t~ 34 (46)
T 2l4j_A 10 GPLPEGWEQAI--TPE-----GEIYYINHKNK 34 (46)
T ss_dssp SCCCTTCEEEE--CTT-----SCEEEEETTTT
T ss_pred CCCCcCceeEE--CCC-----CCEEEEECCCC
Confidence 45889987765 222 24688876554
No 35
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=54.26 E-value=6.8 Score=28.36 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=15.1
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
..||+||.+..- . .. .||++-.|+
T Consensus 2 ~~LP~GWe~~~d----~---~g-~YY~n~~t~ 25 (38)
T 2ho2_A 2 SDLPAGWMRVQD----T---SG-TYYWHIPTG 25 (38)
T ss_dssp CCSCTTEEEEEC----S---SC-EEEEETTTT
T ss_pred CcCCCCceEEEe----C---CC-CEEEecCCC
Confidence 358999976541 1 22 688876554
No 36
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.78 E-value=8 Score=28.00 Aligned_cols=27 Identities=33% Similarity=0.872 Sum_probs=16.4
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
...||+||..-+- .. ...||++-.|+.
T Consensus 5 ~~~LP~GWe~~~d--~~-----Gr~YY~n~~t~~ 31 (43)
T 2dmv_A 5 SSGLPPGWEQRVD--QH-----GRVYYVDHVEKR 31 (43)
T ss_dssp CCSCCTTEEEEEC--TT-----SCEEEEETTTCC
T ss_pred CCCCCCCceEEEC--CC-----CCEEEEECCCCC
Confidence 4568888876551 12 246788776553
No 37
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=52.04 E-value=8.3 Score=29.06 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=15.6
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||...+ -..| ..||++-.|+
T Consensus 9 ~~~LP~gWe~~~--~~~G-----r~Yy~nh~t~ 34 (50)
T 1i5h_W 9 LGPLPPGWEERT--HTDG-----RVFFINHNIK 34 (50)
T ss_dssp CSSCSTTEEEEE--CTTS-----CEEEEETTTT
T ss_pred CCCCCcCcEEEE--cCCC-----CEEEEECCCC
Confidence 446888887654 2222 4677776544
No 38
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=51.76 E-value=6.7 Score=30.52 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=15.7
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||.+.+ -.. ...||+|-.|.
T Consensus 12 ~~~LP~GWe~~~--~~~-----Gr~Yyinh~tk 37 (57)
T 2ysd_A 12 LGPLPENWEMAY--TEN-----GEVYFIDHNTK 37 (57)
T ss_dssp CCSCCSSEEEEE--CSS-----CCEEEEETTTT
T ss_pred CCCCCcCcEEEE--CCC-----CCEEEEECCCC
Confidence 345888887765 222 24677776543
No 39
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.78 E-value=7.6 Score=29.26 Aligned_cols=26 Identities=35% Similarity=0.811 Sum_probs=16.6
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
..||+||.+..- ..| ..||+|-.|+.
T Consensus 12 ~~LP~GWe~~~d--~~g-----~~YYvnh~t~~ 37 (49)
T 2dwv_A 12 EGLPPGWERVES--SEF-----GTYYVDHTNKR 37 (49)
T ss_dssp SCCCTTEEEEEE--TTT-----EEEEEETTTTE
T ss_pred CCCCcCcEEEEC--CCC-----CEEEEECCCCC
Confidence 569999977652 222 26888876543
No 40
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=49.31 E-value=7.6 Score=29.82 Aligned_cols=24 Identities=29% Similarity=0.816 Sum_probs=14.8
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCC
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS 68 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvs 68 (549)
..||.||.+.+- ..| ..||+|-.|
T Consensus 10 ~~LP~GWe~~~~--~~G-----~~Yyinh~t 33 (54)
T 1wmv_A 10 GDLPYGWEQETD--ENG-----QVFFVDHIN 33 (54)
T ss_dssp SCSCTTEEEEEC--TTS-----CEEEEESSS
T ss_pred CCCCcCcEEEEC--CCC-----CEEEEeCCC
Confidence 358999977652 222 357777654
No 41
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=45.94 E-value=28 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=16.9
Q ss_pred CCCCCCCCCeeEEEEEccCCcceee
Q 008894 6 NSDELLPDGCRVEVRVRKNGKKDKI 30 (549)
Q Consensus 6 ~s~~WLPdGW~vEvr~~knG~K~K~ 30 (549)
....-||+||.+. +..+|+.|-|
T Consensus 10 ~~~~~LP~GWe~~--~~~~Gr~Yyi 32 (57)
T 2ysd_A 10 DNLGPLPENWEMA--YTENGEVYFI 32 (57)
T ss_dssp SCCCSCCSSEEEE--ECSSCCEEEE
T ss_pred CCCCCCCcCcEEE--ECCCCCEEEE
Confidence 3455699999766 4568988766
No 42
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=44.92 E-value=9.9 Score=33.48 Aligned_cols=25 Identities=40% Similarity=0.858 Sum_probs=15.1
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS 68 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvs 68 (549)
...||+|| |.++-..| ..||+|-.+
T Consensus 70 ~~pLP~GW--E~r~d~~G-----r~YfIdH~t 94 (109)
T 3l4h_A 70 RLELPRGW--EIKTDQQG-----KSFFVDHNS 94 (109)
T ss_dssp TSCCCTTE--EEEECTTC-----CEEEEETTT
T ss_pred CCCCCCCC--eEEECCCC-----CEEEEeCCC
Confidence 34699999 44334433 368877654
No 43
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=44.83 E-value=19 Score=26.08 Aligned_cols=25 Identities=48% Similarity=0.950 Sum_probs=14.1
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
..||+||.+.. -..| +||++-.++.
T Consensus 7 ~~LP~GWe~~~--~~~G------~YY~n~~t~~ 31 (39)
T 2ysc_A 7 GGLPPGWRKIH--DAAG------TYYWHVPSGS 31 (39)
T ss_dssp CCCCTTEEEEE--ETTE------EEEEESSSCC
T ss_pred CCCCCCcEEEE--cCCC------CEEEEcCCCC
Confidence 45777776543 1221 3777766654
No 44
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.84 E-value=14 Score=29.27 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=16.1
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||.+.+- ..| -.||+|-.|.
T Consensus 11 ~~~LP~GWE~~~d--~~G-----r~YYvnh~tk 36 (60)
T 2yse_A 11 ELELPAGWEKIED--PVY-----GIYYVDHINR 36 (60)
T ss_dssp CSSCCSSEEEEEC--SSS-----CEEEEETTTT
T ss_pred CCCCCCCcEEEEC--CCC-----CEEEEeCCCC
Confidence 4568888876541 222 3688887654
No 45
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=42.49 E-value=14 Score=27.57 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCeeEEEEEccCCcceee
Q 008894 1 MGDRENSDELLPDGCRVEVRVRKNGKKDKI 30 (549)
Q Consensus 1 m~~~e~s~~WLPdGW~vEvr~~knG~K~K~ 30 (549)
|+..+-...=||+||.+. +..+|+.|-|
T Consensus 3 m~~~~~~~~~LP~gWe~~--~~~~G~~Yy~ 30 (49)
T 2kpz_A 3 MGPSEIEQGFLPKGWEVR--HAPNGRPFFI 30 (49)
T ss_dssp ---------CCCTTEEEE--ECTTSCEEEE
T ss_pred CccccccCCCCCCCcEEE--ECCCCCEEEE
Confidence 555555667799999765 5578988755
No 46
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=40.50 E-value=15 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=14.9
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
...||+||.+..- ..| -.||+|-.|+
T Consensus 11 ~~~LP~GWe~~~d--~~G-----r~YYvnh~t~ 36 (49)
T 2zaj_A 11 ELELPAGWEKIED--PVY-----GIYYVDHINR 36 (49)
T ss_dssp SSCCCTTEEEEEE--TTT-----EEEEEETTTT
T ss_pred CCCCCcCceEEEc--CCC-----CEEEEeCCCC
Confidence 3468888866542 222 2577776554
No 47
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=39.64 E-value=17 Score=32.07 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=16.9
Q ss_pred CCCCCCCeeEEEEEccCCcceee
Q 008894 8 DELLPDGCRVEVRVRKNGKKDKI 30 (549)
Q Consensus 8 ~~WLPdGW~vEvr~~knG~K~K~ 30 (549)
..-||+|| |+++..+|+.|-+
T Consensus 70 ~~pLP~GW--E~r~d~~Gr~YfI 90 (109)
T 3l4h_A 70 RLELPRGW--EIKTDQQGKSFFV 90 (109)
T ss_dssp TSCCCTTE--EEEECTTCCEEEE
T ss_pred CCCCCCCC--eEEECCCCCEEEE
Confidence 34599999 8888999998654
No 48
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=37.19 E-value=17 Score=29.86 Aligned_cols=27 Identities=30% Similarity=0.774 Sum_probs=17.0
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
...||+||.+.+ ...| ..||++..|+.
T Consensus 7 ~~~LP~gWe~~~--~~~G-----r~YY~n~~t~~ 33 (90)
T 2kxq_A 7 PPDLPEGYEQRT--TQQG-----QVYFLHTQTGV 33 (90)
T ss_dssp CCSCCSSCEEEE--ETTT-----EEEEEETTTTE
T ss_pred CCCCCCCcEEEE--CCCC-----CEEEEECCCCe
Confidence 457999995444 3333 36888876543
No 49
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=37.10 E-value=29 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCeeEEEEEccCCcceee
Q 008894 2 GDRENSDELLPDGCRVEVRVRKNGKKDKI 30 (549)
Q Consensus 2 ~~~e~s~~WLPdGW~vEvr~~knG~K~K~ 30 (549)
|.| ..+.=||+||.+- +..+|+.|-|
T Consensus 1 ~~p-~~~~~LP~gWe~~--~~~~G~~Yy~ 26 (41)
T 1wr7_A 1 GSP-GIQSFLPPGWEMR--IAPNGRPFFI 26 (41)
T ss_dssp CTT-CCCCSSCTTEEEE--ECTTSCEEEE
T ss_pred CCC-CccCCCCCCcEEE--EcCCCCEEEE
Confidence 345 4567799999765 4568988755
No 50
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=33.86 E-value=17 Score=26.45 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=7.2
Q ss_pred CCCCCCceEEE
Q 008894 38 DGLPPGWTKEI 48 (549)
Q Consensus 38 ~~LP~GWvkE~ 48 (549)
..||+||.+..
T Consensus 7 ~~LP~GWe~~~ 17 (46)
T 1jmq_A 7 VPLPAGWEMAK 17 (46)
T ss_dssp CCCCTTBCCBC
T ss_pred CCCCcCcEEEE
Confidence 45888886543
No 51
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=33.86 E-value=15 Score=30.03 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=17.3
Q ss_pred CCCCCCCceEEEEEecCCCcccccccccCCCCCc
Q 008894 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (549)
Q Consensus 37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGy 70 (549)
...||+||.+.+ -..| ..||++-.|+.
T Consensus 10 ~~~LP~gWe~~~--~~~G-----r~Yy~n~~t~~ 36 (88)
T 1tk7_A 10 LGPLPDGWEKKI--QSDN-----RVYFVNHKNRT 36 (88)
T ss_dssp TSSSSSSCCEEE--ETTT-----EEEEEETTTTE
T ss_pred cCCCCCCcEEEE--CCCC-----CEEEEECCCCC
Confidence 346999996654 2333 36888776554
No 52
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=26.46 E-value=23 Score=29.85 Aligned_cols=54 Identities=26% Similarity=0.499 Sum_probs=25.1
Q ss_pred ceeeEeecc---CCCCCCCCceEEEEEecCCCcccccccccCCCCCccccchHHHHHHHhhccccce
Q 008894 27 KDKIIIEKD---TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 90 (549)
Q Consensus 27 K~K~viEr~---~~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGykFRSkkdV~RYLeTG~Isr~ 90 (549)
+.|+|+++. --+-||+||+.=. -.+|- +-|.+-.|...--|++ +||.+|.+.++
T Consensus 13 ~~K~VL~~~g~~~~~~LPeGW~~v~--H~SGm-----P~YlH~~trV~T~SrP---Y~lG~gsvr~H 69 (79)
T 3le4_A 13 KIKTVLKSRGRPPTEPLPDGWIMTF--HNSGV-----PVYLHRESRVVTWSRP---YFLGTGSIRKH 69 (79)
T ss_dssp -----------CCCCCCCTTEEEEE--CTTSS-----EEEEETTTTEEESSCC---CCCTTSCTTTC
T ss_pred hhhhHhhhcCCCcCCcCCCccEEEE--ecCCc-----eEEEeccceEEeccCC---eEecCCccccc
Confidence 345555543 2346999998654 33443 3344444555555544 45666666654
No 53
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=26.24 E-value=28 Score=31.48 Aligned_cols=26 Identities=31% Similarity=0.758 Sum_probs=12.9
Q ss_pred CCCCCCceEEEEEecCCCcccccccccCCCCC
Q 008894 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (549)
Q Consensus 38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsG 69 (549)
..||+||..- .+-. ....||++..|+
T Consensus 8 ~~LP~gWe~~----~~~~--~g~~yy~n~~t~ 33 (166)
T 3tc5_A 8 EKLPPGWEKA----MSRS--SGRVYYFNHITN 33 (166)
T ss_dssp --CCTTEEEE----ECTT--TCCEEEEETTTC
T ss_pred CCCCCCceEE----EcCC--CCCEEEEECCCC
Confidence 4688888432 2211 124688776544
No 54
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=24.39 E-value=38 Score=30.61 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=20.3
Q ss_pred CCCCCCeeEEEEEc-cCCcceeeEeeccCCCCCCC
Q 008894 9 ELLPDGCRVEVRVR-KNGKKDKIIIEKDTPDGLPP 42 (549)
Q Consensus 9 ~WLPdGW~vEvr~~-knG~K~K~viEr~~~~~LP~ 42 (549)
+=||+|| |++.. ..|+.|-+-....+..|.++
T Consensus 8 ~~LP~gW--e~~~~~~~g~~yy~n~~t~~t~We~P 40 (166)
T 3tc5_A 8 EKLPPGW--EKAMSRSSGRVYYFNHITNASQWERP 40 (166)
T ss_dssp --CCTTE--EEEECTTTCCEEEEETTTCCEESSCC
T ss_pred CCCCCCc--eEEEcCCCCCEEEEECCCCCEEecCC
Confidence 4599999 56777 57988777544435556544
Done!