Query 008895
Match_columns 549
No_of_seqs 200 out of 2889
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 8E-85 2.7E-89 685.1 55.2 514 19-542 6-535 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 8.3E-82 2.8E-86 663.2 51.5 511 19-542 9-543 (548)
3 3g7s_A Long-chain-fatty-acid-- 100.0 1.7E-82 5.9E-87 669.3 43.8 511 22-545 7-545 (549)
4 4fuq_A Malonyl COA synthetase; 100.0 5.1E-82 1.8E-86 658.2 46.0 490 42-542 4-500 (503)
5 3rix_A Luciferase, luciferin 4 100.0 8.5E-83 2.9E-87 671.8 39.2 516 18-544 4-543 (550)
6 3r44_A Fatty acyl COA syntheta 100.0 2E-81 6.8E-86 656.0 43.0 493 37-543 15-514 (517)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.7E-81 1.3E-85 657.3 42.2 491 38-542 25-531 (539)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.9E-80 1.3E-84 644.9 47.6 486 38-541 2-503 (504)
9 3fce_A D-alanine--poly(phospho 100.0 3.4E-80 1.2E-84 646.9 44.9 495 38-546 1-508 (512)
10 3etc_A AMP-binding protein; ad 100.0 4.6E-79 1.6E-83 645.3 49.9 493 38-542 55-579 (580)
11 3o83_A Peptide arylation enzym 100.0 3.4E-81 1.2E-85 658.4 33.0 495 38-545 30-543 (544)
12 1pg4_A Acetyl-COA synthetase; 100.0 3.4E-79 1.2E-83 655.2 47.3 495 40-543 78-622 (652)
13 3e7w_A D-alanine--poly(phospho 100.0 9E-79 3.1E-83 635.8 48.6 492 38-544 1-505 (511)
14 1v25_A Long-chain-fatty-acid-C 100.0 4.1E-80 1.4E-84 649.7 38.6 492 37-543 17-537 (541)
15 3tsy_A Fusion protein 4-coumar 100.0 6E-80 2E-84 691.6 41.6 520 17-544 43-584 (979)
16 3ivr_A Putative long-chain-fat 100.0 4.4E-80 1.5E-84 645.6 36.2 490 37-545 5-504 (509)
17 1amu_A GRSA, gramicidin synthe 100.0 3.7E-78 1.3E-82 636.6 46.5 479 38-542 39-529 (563)
18 3l8c_A D-alanine--poly(phospho 100.0 1.5E-78 5.1E-83 636.2 41.7 494 38-545 4-515 (521)
19 4gr5_A Non-ribosomal peptide s 100.0 2E-79 6.9E-84 648.5 35.2 483 37-540 74-569 (570)
20 1ry2_A Acetyl-coenzyme A synth 100.0 4E-78 1.4E-82 646.9 45.6 497 39-543 83-638 (663)
21 2v7b_A Benzoate-coenzyme A lig 100.0 3E-77 1E-81 627.3 48.9 485 38-539 23-529 (529)
22 4dg8_A PA1221; ANL superfamily 100.0 2.2E-78 7.5E-83 643.5 40.5 477 38-543 27-514 (620)
23 3rg2_A Enterobactin synthase c 100.0 1.7E-77 5.8E-82 639.4 46.5 488 38-542 27-534 (617)
24 3c5e_A Acyl-coenzyme A synthet 100.0 2.8E-77 9.7E-82 630.8 46.3 493 38-546 37-566 (570)
25 3ipl_A 2-succinylbenzoate--COA 100.0 1.3E-77 4.5E-82 626.0 40.0 481 38-544 1-499 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 8.2E-78 2.8E-82 626.5 34.4 474 38-538 22-504 (505)
27 2vsq_A Surfactin synthetase su 100.0 1.1E-74 3.8E-79 664.4 44.4 483 38-541 464-959 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 4.8E-75 1.6E-79 619.5 31.2 495 37-546 10-571 (590)
29 3ite_A SIDN siderophore synthe 100.0 1.2E-74 4E-79 612.1 33.7 493 37-544 19-545 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 1E-72 3.5E-77 600.2 34.3 490 38-542 21-563 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 6.7E-60 2.3E-64 490.3 27.7 385 38-439 24-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.5E-54 5E-59 430.0 20.7 317 191-544 36-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.2E-50 1.1E-54 411.6 24.2 326 190-536 83-431 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.8E-50 9.7E-55 412.9 20.5 331 189-538 89-440 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.7E-49 5.9E-54 406.3 20.7 329 189-537 87-434 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.5E-31 8.6E-36 265.4 16.0 239 189-449 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 7.5E-16 2.6E-20 123.8 5.8 101 438-539 1-108 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 1.9E-15 6.5E-20 121.1 6.9 95 438-534 1-102 (109)
39 4eql_A 4-substituted benzoates 99.1 2.4E-09 8.3E-14 109.6 17.0 134 306-463 296-447 (581)
40 4b2g_A GH3-1 auxin conjugating 99.0 6.1E-09 2.1E-13 106.7 18.4 144 306-473 301-477 (609)
41 4epl_A Jasmonic acid-amido syn 98.9 1.4E-08 4.7E-13 103.7 15.5 161 306-490 301-488 (581)
42 2y27_A Phenylacetate-coenzyme 91.7 0.89 3.1E-05 45.2 10.7 99 56-156 89-196 (437)
43 2y4o_A Phenylacetate-coenzyme 90.7 1.1 3.6E-05 44.7 10.1 99 56-156 91-198 (443)
44 3qov_A Phenylacetate-coenzyme 88.9 1.6 5.6E-05 43.2 9.8 98 57-156 86-192 (436)
45 3hgu_A EHPF; phenazine, antibi 79.2 5.5 0.00019 38.3 8.4 99 56-157 90-220 (369)
46 2d1s_A Luciferase, luciferin 4 77.3 9 0.00031 39.1 9.7 99 56-157 191-298 (548)
47 3ipl_A 2-succinylbenzoate--COA 75.2 21 0.00073 35.7 11.8 97 56-157 162-266 (501)
48 3o83_A Peptide arylation enzym 71.9 30 0.001 35.1 12.0 96 56-156 190-295 (544)
49 1mdb_A 2,3-dihydroxybenzoate-A 68.7 28 0.00097 35.3 11.0 96 56-156 181-286 (539)
50 3r44_A Fatty acyl COA syntheta 67.5 37 0.0013 34.2 11.5 96 56-157 169-273 (517)
51 3rix_A Luciferase, luciferin 4 66.4 21 0.00073 36.3 9.5 100 56-157 189-296 (550)
52 3e7w_A D-alanine--poly(phospho 61.7 26 0.00087 35.3 9.0 97 56-156 142-248 (511)
53 3kxw_A Saframycin MX1 syntheta 61.2 29 0.00098 35.6 9.4 96 56-155 166-273 (590)
54 3fce_A D-alanine--poly(phospho 60.6 21 0.00073 35.8 8.2 97 56-156 143-249 (512)
55 1v25_A Long-chain-fatty-acid-C 58.1 33 0.0011 34.8 9.1 99 56-156 175-281 (541)
56 3c5e_A Acyl-coenzyme A synthet 57.6 46 0.0016 34.0 10.1 98 56-157 205-312 (570)
57 3rg2_A Enterobactin synthase c 55.9 71 0.0024 32.9 11.4 96 56-156 183-288 (617)
58 1t5h_X 4-chlorobenzoyl COA lig 55.0 46 0.0016 33.2 9.5 96 56-156 152-258 (504)
59 3ni2_A 4-coumarate:COA ligase; 54.3 22 0.00075 36.0 7.0 101 56-157 177-286 (536)
60 2v7b_A Benzoate-coenzyme A lig 51.9 58 0.002 32.7 9.7 97 56-156 182-288 (529)
61 2cvi_A 75AA long hypothetical 47.5 58 0.002 23.0 6.5 50 453-512 15-64 (83)
62 3ivr_A Putative long-chain-fat 47.0 1.4E+02 0.0046 29.7 11.5 96 56-157 159-263 (509)
63 4gr5_A Non-ribosomal peptide s 46.8 58 0.002 33.2 8.8 96 56-156 213-317 (570)
64 3l8c_A D-alanine--poly(phospho 45.9 91 0.0031 31.1 10.1 99 56-156 144-252 (521)
65 4dg8_A PA1221; ANL superfamily 44.4 64 0.0022 33.4 8.7 96 56-156 163-267 (620)
66 3nyq_A Malonyl-COA ligase; A/B 43.6 1.3E+02 0.0043 30.0 10.6 95 56-156 154-257 (505)
67 3t5a_A Long-chain-fatty-acid-- 43.2 38 0.0013 33.5 6.6 90 56-150 182-289 (480)
68 3g7s_A Long-chain-fatty-acid-- 42.9 51 0.0017 33.4 7.6 95 57-156 180-282 (549)
69 3tsy_A Fusion protein 4-coumar 42.3 61 0.0021 35.7 8.6 100 56-156 224-332 (979)
70 1amu_A GRSA, gramicidin synthe 41.9 65 0.0022 32.8 8.3 94 56-153 181-284 (563)
71 3tbh_A O-acetyl serine sulfhyd 39.4 78 0.0027 29.7 7.7 91 58-151 36-127 (334)
72 4gs5_A Acyl-COA synthetase (AM 36.5 70 0.0024 30.2 7.0 93 57-156 37-137 (358)
73 2zbc_A 83AA long hypothetical 36.5 94 0.0032 21.6 6.2 49 453-511 15-63 (83)
74 3gqw_A Fatty acid AMP ligase; 36.4 77 0.0026 32.1 7.8 98 56-156 175-284 (576)
75 3vc3_A Beta-cyanoalnine syntha 33.7 1.1E+02 0.0036 28.9 7.6 92 58-151 51-142 (344)
76 1pg4_A Acetyl-COA synthetase; 32.4 90 0.0031 32.4 7.6 99 56-157 255-365 (652)
77 3ezx_A MMCP 1, monomethylamine 31.8 2.5E+02 0.0085 24.2 12.6 90 235-326 94-194 (215)
78 3ite_A SIDN siderophore synthe 30.5 1.2E+02 0.0041 30.6 8.1 99 56-154 174-284 (562)
79 2djw_A Probable transcriptiona 29.0 96 0.0033 22.3 5.2 50 453-512 15-64 (92)
80 3etc_A AMP-binding protein; ad 26.2 1.5E+02 0.005 30.2 7.8 98 56-157 224-331 (580)
81 1ry2_A Acetyl-coenzyme A synth 25.7 1.5E+02 0.005 30.9 7.8 99 56-157 261-371 (663)
82 4fuq_A Malonyl COA synthetase; 23.4 2.4E+02 0.0083 27.8 8.7 79 211-290 28-109 (503)
83 2vsq_A Surfactin synthetase su 21.9 1.7E+02 0.0058 33.4 7.9 96 56-156 606-711 (1304)
84 3ju7_A Putative PLP-dependent 21.2 2.2E+02 0.0074 27.0 7.5 60 85-148 69-135 (377)
85 4hlb_A Uncharacterized protein 20.8 2.1E+02 0.007 20.1 5.0 36 67-102 61-96 (115)
86 1zsy_A Mitochondrial 2-enoyl t 20.2 2.3E+02 0.008 26.5 7.4 79 69-148 139-222 (357)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=8e-85 Score=685.11 Aligned_cols=514 Identities=37% Similarity=0.598 Sum_probs=454.5
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEE
Q 008895 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (549)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V 98 (549)
..+|++..++.++|. .+|+.++|.++++++ |+++|+++..+++++||+||.++++++|++|++ .|+++||+|
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 77 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNH----SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI 77 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGS----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcC----CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 467778777777774 379999999999999 999999997667899999999999999999999 999999999
Q ss_pred EEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CCCeEEEecCC-----
Q 008895 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDSP----- 169 (549)
Q Consensus 99 ~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~----- 169 (549)
+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.. ....++.++..
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL 157 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCE
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876655432 24455555432
Q ss_pred chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC---CCCCCCcEEEEecChhhH
Q 008895 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVSPAVMLFTMPYFHI 246 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~~pl~~~ 246 (549)
.+.++...... ........++++++++|||||||.||+|+++|+++.+.+....... ....+.+++++.+|++|.
T Consensus 158 ~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 158 HFSELTQADEN--EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp ETHHHHTSCGG--GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSH
T ss_pred CHHHHhhcccc--ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHH
Confidence 12333221111 1222345678999999999999999999999999998877654422 146778999999999999
Q ss_pred HHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHH
Q 008895 247 YGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325 (549)
Q Consensus 247 ~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~ 325 (549)
+++ ...+.++..|+++++.+.+++..+++.++++++|+++++|+++..+++.......+++++|.+++|||++++++.+
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 315 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELED 315 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHH
Confidence 998 5578889999999999999999999999999999999999999999998776677899999999999999999999
Q ss_pred HHHHhCCCCcEEcccCccccccceeccc---CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccc
Q 008895 326 AFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402 (549)
Q Consensus 326 ~~~~~~~~~~l~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g 402 (549)
++++.++++.+++.||+||++.+++.+. ........+++|+|+++++++|+|++++++++.|+.|||+|+|++++.|
T Consensus 316 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G 395 (536)
T 3ni2_A 316 TVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395 (536)
T ss_dssp HHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchh
Confidence 9999999999999999999997765432 1223345689999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCce
Q 008895 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQM 482 (549)
Q Consensus 403 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~ 482 (549)
|+++|+.+...|..+|||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.
T Consensus 396 Y~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~ 475 (536)
T 3ni2_A 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEV 475 (536)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCce
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 483 PMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 483 ~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++++|+..++...+.++|+++++++|+.|++|+.++++++||+|++|||+|++|++++..
T Consensus 476 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 476 PVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 999999988878899999999999999999999999999999999999999999998853
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=8.3e-82 Score=663.18 Aligned_cols=511 Identities=32% Similarity=0.499 Sum_probs=442.9
Q ss_pred CceeccCCCCCCCCCCCCCCCHHH-HHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCE
Q 008895 19 TKTFHSLRPPIDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT 97 (549)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~ 97 (549)
.|+|++..+....|. ..|+.+ ++.++++++ +++|+++...++++||+||.++++++|+.|++ .|+++||+
T Consensus 9 ~~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-----~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~ 79 (548)
T 2d1s_A 9 NIVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-----GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGR 79 (548)
T ss_dssp TSEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-----TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCE
T ss_pred ceEecCCCCCCCCCC---cCcHHHHHHHhhhccc-----CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCE
Confidence 467888776666654 258888 788777644 68999985447899999999999999999998 89999999
Q ss_pred EEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----C--CCeEEEecCC--
Q 008895 98 AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L--KHRTILIDSP-- 169 (549)
Q Consensus 98 V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~--~~~~~~~~~~-- 169 (549)
|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+.. . ...++.++..
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 9999999999999999999999999999999999999999999999999999887665432 1 2344444432
Q ss_pred -----chhhhhcccCCCccccccccC-----C-CCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcE
Q 008895 170 -----EFDSMTMSWNSKHELDRAKVC-----Q-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAV 236 (549)
Q Consensus 170 -----~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~ 236 (549)
.+.++....... ........ + +++++++|||||||.||+|.++|+++.+......... ....++++
T Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~ 238 (548)
T 2d1s_A 160 YRGYQCLDTFIKRNTPP-GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTA 238 (548)
T ss_dssp BTTBCBHHHHHHHTSCT-TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred ccccccHHHHHhcCccc-cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccce
Confidence 234433221110 01111122 3 8899999999999999999999999998887776652 24677899
Q ss_pred EEEecChhhHHHHHH-HHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEe
Q 008895 237 MLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (549)
Q Consensus 237 ~~~~~pl~~~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~ 315 (549)
+++.+|++|.+++.. ++.++ .|+++++.+.+++..+++.|+++++|+++++|+++..|.+.......+++++|.+++|
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 999999999999865 45666 9999999988999999999999999999999999999998766555678999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEe
Q 008895 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (549)
Q Consensus 316 Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (549)
|+++++++.+++.+.++++.+++.||+||++..++... ......+++|+|+++++++|+|++++++++.|+.|||+|+
T Consensus 318 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 395 (548)
T 2d1s_A 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP--EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395 (548)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CccCCHHHHHHHHHHcCCCceeeccccccccceeeecC--cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEEC
Confidence 99999999999999998889999999999987766532 2234568999999999999999889999999999999999
Q ss_pred cCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec
Q 008895 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475 (549)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~ 475 (549)
|++++.||+++|+.|.+.|..+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus 396 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~ 475 (548)
T 2d1s_A 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVP 475 (548)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred CHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEE
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccc-EEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 476 ~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~-~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++..++.++++|+++++...+.++|+++++++|+.|++|+ .|+++++||+|++||++|++|++++.+
T Consensus 476 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 476 DPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp ETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred cCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 8888899999999887767789999999999999999999 999999999999999999999998764
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.7e-82 Score=669.33 Aligned_cols=511 Identities=30% Similarity=0.460 Sum_probs=401.8
Q ss_pred eccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCC------ceecHHHHHHHHHHHHHHhHHhcCCCCC
Q 008895 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKN 95 (549)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~a~~~A~~L~~~~g~~~g 95 (549)
|.+..++.++|. .|+.++|.++++++ |+++|+++.... +++||+||.++++++|++|++ .|+++|
T Consensus 7 ~~~~~p~~~~~~----~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g 77 (549)
T 3g7s_A 7 YKIGFPSLYYPK----ISLADRIDAAAEKF----GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKG 77 (549)
T ss_dssp SCCCCCCCCCCC----CCTTHHHHHHHHHH----TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTT
T ss_pred eccCCCCCCcCC----CCHHHHHHHHHHhC----CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCC
Confidence 334444455555 89999999999999 999999987311 899999999999999999999 899999
Q ss_pred CEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CCCe-EEEec--C
Q 008895 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILID--S 168 (549)
Q Consensus 96 ~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~-~~~~~--~ 168 (549)
|+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+.. .... ++..+ .
T Consensus 78 d~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (549)
T 3g7s_A 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEV 157 (549)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999887665542 2333 33332 2
Q ss_pred CchhhhhcccCCCccccccccC-CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHH
Q 008895 169 PEFDSMTMSWNSKHELDRAKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 247 (549)
..+.+........ ....... ++++++|+|||||||.||+|+++|+++.+........+ ...+.++++..+|++|.+
T Consensus 158 ~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~ 234 (549)
T 3g7s_A 158 NSLSEVMDSGSED--FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSA 234 (549)
T ss_dssp SCHHHHHHHSCSC--CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHH
T ss_pred cCHHHHHhcCccc--cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHH
Confidence 2344443322211 1112223 38999999999999999999999999999888777666 467889999999999999
Q ss_pred HHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCC--CCCCCceEEEEecCCCCHHHHH
Q 008895 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIM 325 (549)
Q Consensus 248 g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~~Ge~l~~~~~~ 325 (549)
++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++...... .+++++|.+++||+++++++.+
T Consensus 235 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~ 314 (549)
T 3g7s_A 235 EFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVE 314 (549)
T ss_dssp HHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHH
Confidence 99778889999999999999999999999999999999999999999987643332 5689999999999999999999
Q ss_pred HHHHh----CC--CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCc
Q 008895 326 AFASK----FP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399 (549)
Q Consensus 326 ~~~~~----~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~ 399 (549)
++.+. ++ ++.+++.||+||++.++..... ......+++|+|+++++++|+|++++++++.|+.|||+|+|+++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v 393 (549)
T 3g7s_A 315 KLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP-LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNI 393 (549)
T ss_dssp HHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG-GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTS
T ss_pred HHHHHHHhhcCCccccccceEeccccchhhhcCCc-cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcch
Confidence 99988 52 3899999999999987665432 22245678999999999999998999999999999999999999
Q ss_pred ccccCCCccccccccC--CCC--eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec
Q 008895 400 MKGYVGEPEVTSATLL--PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475 (549)
Q Consensus 400 ~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~ 475 (549)
+.||+++++.+...|. .+| ||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.+||+|.+++|++.+
T Consensus 394 ~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 473 (549)
T 3g7s_A 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKP 473 (549)
T ss_dssp CSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCC
T ss_pred hhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 9999999999999884 567 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 476 DEEAGQMPMAFVVRQPH--SSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 476 ~~~~~~~~~~~v~~~~~--~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
++..++.++++|+++++ ...+.++|+++|+++|+.|++|+.|+++++||+|++|||+|++|++++.+...
T Consensus 474 ~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 545 (549)
T 3g7s_A 474 DEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHH 545 (549)
T ss_dssp C------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------------------
T ss_pred ccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccc
Confidence 98889999999998876 56788999999999999999999999999999999999999999999877653
No 4
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.1e-82 Score=658.20 Aligned_cols=490 Identities=27% Similarity=0.419 Sum_probs=425.8
Q ss_pred HHHhhcccCCCCCCCCCcEEEE-CCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCC
Q 008895 42 DYVSSLRATLPWRDDDTVALIN-SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (549)
Q Consensus 42 ~~~~~~~~~~~~~~p~~~a~~~-~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~ 120 (549)
+++.+.++++ |++.|+.. ...++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~----p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKL----DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCC----SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhC----CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 3566777778 77776652 1236899999999999999999999 8999999999999999999999999999999
Q ss_pred eEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHh----cCCCeEEEecCCchhhhhcc-cCCCccccccccCCCCEE
Q 008895 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMS-WNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 121 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a 195 (549)
+++|++|.++.+++.+++++++++++|++....+.+. .....+..++......+... .............+++++
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 158 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEE
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeE
Confidence 9999999999999999999999999999976543322 22334444432221111100 000111222345678999
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML 274 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~ 274 (549)
+++|||||||.||+|+++|+++.+........+ ...++++++..+|++|.+|+ ...+.++..|+++++.+.+++..++
T Consensus 159 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 237 (503)
T 4fuq_A 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL 237 (503)
T ss_dssp EEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHH
Confidence 999999999999999999999999988877777 57889999999999999997 4567888999999999999999999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.++ ++|+++++|+++..+++........++++|.+++||+++++++.+.|.+.+ ++.+++.||+||++..... .
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~ 312 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--P 312 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--C
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--C
Confidence 9998 899999999999999998877777789999999999999999999999998 7899999999999876443 2
Q ss_pred cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeE
Q 008895 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434 (549)
Q Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~ 434 (549)
.......+++|+|+++++++|+|++++++++.|+.|||+|+|++++.||+++|+.+...|..+|||+|||+|++|++|++
T Consensus 313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 392 (503)
T 4fuq_A 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYV 392 (503)
T ss_dssp SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEE
T ss_pred CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcE
Confidence 23344568899999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred EEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcc
Q 008895 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI 514 (549)
Q Consensus 435 ~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p 514 (549)
++.||+||+||++|++|+|.|||++|.+||+|.+++|+++++...++.++++|+.+++...+.++++++++++|+.|++|
T Consensus 393 ~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P 472 (503)
T 4fuq_A 393 HILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMP 472 (503)
T ss_dssp EECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCC
T ss_pred EEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 99999999999999999999999999999999999999999988899999999998888889999999999999999999
Q ss_pred cEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 515 RRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 515 ~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+.|+++++||+|++|||+|++|++++.+
T Consensus 473 ~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 473 KKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp SEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred CEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 9999999999999999999999999865
No 5
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=8.5e-83 Score=671.83 Aligned_cols=516 Identities=32% Similarity=0.532 Sum_probs=345.1
Q ss_pred CCceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEE---ECCCCceecHHHHHHHHHHHHHHhHHhcCCCC
Q 008895 18 ATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSK 94 (549)
Q Consensus 18 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~ 94 (549)
...+++++.+..++|. .|+.++|.++++++ |+++|++ +...++++||+||.++++++|++|++ .|+++
T Consensus 4 ~~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~----p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~ 74 (550)
T 3rix_A 4 AKNIKKGPAPFYPLED----GTAGEQLHKAMKRY----ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNT 74 (550)
T ss_dssp GGGSEECCCCSSCCCC----SCHHHHHHHHHHHH----HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCT
T ss_pred ccceeeCCCCCCCccc----CCHHHHHHHHHHhC----CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCC
Confidence 3557778887777776 89999999999999 8888765 65557899999999999999999999 89999
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------CCeEEEecC
Q 008895 95 NDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDS 168 (549)
Q Consensus 95 g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~ 168 (549)
||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+... ...++.++.
T Consensus 75 gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
T 3rix_A 75 NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDS 154 (550)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTC
T ss_pred CCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999998876654321 123333332
Q ss_pred C-------chhhhhcccCCC----cc-ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCC
Q 008895 169 P-------EFDSMTMSWNSK----HE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSP 234 (549)
Q Consensus 169 ~-------~~~~~~~~~~~~----~~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~ 234 (549)
. .+.++....... .. .......++++++++|||||||.||+|+++|+++........... ....++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~ 234 (550)
T 3rix_A 155 KTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234 (550)
T ss_dssp SSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTT
T ss_pred CccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCC
Confidence 1 122222111100 00 111122357899999999999999999999999998887766553 246778
Q ss_pred cEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEE
Q 008895 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC 314 (549)
Q Consensus 235 ~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 314 (549)
+++++.+|++|.++++..+.++..|+++++...+++..+++.|+++++|+++++|+++..+++.......+++++|.+++
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~ 314 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEE
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEE
Confidence 99999999999999988889999999999999999999999999999999999999999999987766777999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEE
Q 008895 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (549)
Q Consensus 315 ~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (549)
||+++++++.+++.+.++...+++.||+||++..++... ......+++|+|+++++++|+|++++++++.|+.|||+|
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v 392 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP--EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCV 392 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCC--CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEE
Confidence 999999999999999995556899999999998776543 233466899999999999999988999999999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEee
Q 008895 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474 (549)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~ 474 (549)
+|++++.||+++++.+...|..+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.
T Consensus 393 ~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~ 472 (550)
T 3rix_A 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGL 472 (550)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------------------
T ss_pred eCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccc-EEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 475 ~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~-~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++..++.++++|+.+++...+.++++++++++++.++.|. .|+++++||+|++|||+|++|++++.+..
T Consensus 473 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 473 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 99888999999999887777788999999999999987665 79999999999999999999999997654
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2e-81 Score=656.01 Aligned_cols=493 Identities=27% Similarity=0.398 Sum_probs=429.8
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..|+.++|.++++++ |+++|+++...+.++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 15 ~~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 15 MKNIGWMLRQRATVS----PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GGCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhC----CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 379999999999999 999999988434599999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----C--CeEEEe-cCCchhhhhcccCCCcccccccc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTILI-DSPEFDSMTMSWNSKHELDRAKV 189 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (549)
++|++++|++|.++.+++.+++++++++++|++......+... . ..++.+ ....+.+....... .......
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 167 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA--DEPAVEC 167 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC--CCCCCCC
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc--CCCCCCC
Confidence 9999999999999999999999999999999998776654321 0 011111 11122222221111 1223345
Q ss_pred CCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcC
Q 008895 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD 269 (549)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~ 269 (549)
.++++++++|||||||.||+|+++|+++.+........+ ....++++++.+|++|.+++...+.++..|+++++.+.++
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~ 246 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFD 246 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCC
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCC
Confidence 678999999999999999999999999999988877777 5788899999999999999977666666999999999999
Q ss_pred HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccce
Q 008895 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (549)
Q Consensus 270 ~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~ 349 (549)
+..+++.+.++++|+++++|+++..+.+.......+++++|.+++||+++++++.+.+.+. ++++++.||+||++..+
T Consensus 247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGG 324 (517)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCE
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccce
Confidence 9999999999999999999999999988765555678899999999999999999999987 88999999999998877
Q ss_pred ecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEe
Q 008895 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (549)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 429 (549)
............+++|+|.++++++|+| +++.+++.| .|||+|+|++++.||+++|+.+...| .+|||+|||+|+++
T Consensus 325 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~ 401 (517)
T 3r44_A 325 TLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEID 401 (517)
T ss_dssp EEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEEC
T ss_pred eecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEc
Confidence 6554444455678999999999999999 678888888 89999999999999999999999999 68999999999999
Q ss_pred cCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCC
Q 008895 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVS 509 (549)
Q Consensus 430 ~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~ 509 (549)
+||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++ ..++...+.++|+++++++|+
T Consensus 402 ~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~ 480 (517)
T 3r44_A 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLA 480 (517)
T ss_dssp TTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHHHSC
T ss_pred CCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988888888888 455566789999999999999
Q ss_pred CCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 510 PYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 510 ~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
.|++|+.|+++++||+|++|||+|++|++++.+.
T Consensus 481 ~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 481 RYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp GGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred CCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 9999999999999999999999999999998764
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.7e-81 Score=657.31 Aligned_cols=491 Identities=25% Similarity=0.366 Sum_probs=425.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 25 ~tl~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 69999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--------HHHh-cC-CCe-EEEecC-CchhhhhcccCCCcccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-KL-KHR-TILIDS-PEFDSMTMSWNSKHELD 185 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 185 (549)
+|++++|++|.++.+++.+++++++++++|+++... ..+. .. ... ++..+. ..+.++..... . ...
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 175 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHT-E-PVK 175 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCC-C-CCC
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhccc-c-ccc
Confidence 999999999999999999999999999999987531 1111 11 122 222222 12222221111 0 111
Q ss_pred ccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhccEEE
Q 008895 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMETAV 263 (549)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g~~~~ 263 (549)
.....++++++++|||||||.||||+++|+++.+.+......+ ...+++++++.+|++|.+++. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 2335678999999999999999999999999998887766665 467889999999999999985 5889999999999
Q ss_pred EecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcc
Q 008895 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (549)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~t 343 (549)
+.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++.+.+ ++.+++.||+|
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 333 (539)
T 1mdb_A 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (539)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCC
Confidence 99989999999999999999999999999999876544556789999999999999999999999998 78999999999
Q ss_pred ccccceecccCcCCCCCCCccccccCC-cEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 008895 344 ESTAGVFRTVGPDECRRWGSTGRLSAG-LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (549)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (549)
|++..... .........+++|+|+++ .+++|+| +++++++.|+.|||+|+|++++.||+++++.|...|..+|||+|
T Consensus 334 E~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 334 EGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp TSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 96543322 111111234689999976 4899999 67899999999999999999999999999999999988999999
Q ss_pred CceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 008895 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIME 502 (549)
Q Consensus 423 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~ 502 (549)
||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++|+.++ ...+.+++++
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~ 490 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKA 490 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHH
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888899999999874 4568899999
Q ss_pred HHHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 503 FVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 503 ~l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++++ |+.|++|+.|+++++||+|++|||+|++|++++.+
T Consensus 491 ~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 491 FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 99998 99999999999999999999999999999998754
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.9e-80 Score=644.89 Aligned_cols=486 Identities=24% Similarity=0.338 Sum_probs=420.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.++|.++++++ |+++|+++...++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 2 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 76 (504)
T 1t5h_X 2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR 76 (504)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 47899999999999 999999986556899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEE--cCccHHHH-hcC-CCeEEEecCCchhhhhcccC---CCccccccccC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFA--TSSVVHKL-AKL-KHRTILIDSPEFDSMTMSWN---SKHELDRAKVC 190 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 190 (549)
+|++++|++|.++.+++.+++++++++++++ +....+.+ ... ...++. +.++..... ...........
T Consensus 77 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 151 (504)
T 1t5h_X 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQRE 151 (504)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCC
T ss_pred hCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCC
Confidence 9999999999999999999999999999999 77665554 322 223222 222222110 00011113346
Q ss_pred CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCC--CCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecC
Q 008895 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR 267 (549)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~ 267 (549)
++++++++|||||||.||+|.++|+++.+........+ +. .+.+++++.+|++|.+++ ...+.++..|+++++.+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 230 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC
Confidence 78999999999999999999999999998887776665 34 678999999999999998 667889999999999999
Q ss_pred cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccc
Q 008895 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (549)
Q Consensus 268 ~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 345 (549)
+++..+++.|+++++|+++++|+++..|++... .....++++|.+++||+++++++.+++.+.+ +..+++.||+||+
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA 309 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccc
Confidence 999999999999999999999999999987642 2345689999999999999999999999999 6889999999999
Q ss_pred ccceecccCcCCCCCCCccccccCCcEEEEEcCCCC--CcCCCCCcceEEEe-cCCcccccCCCccccccccCCCCeeec
Q 008895 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG--DSLPPGKEGELSIR-GPTIMKGYVGEPEVTSATLLPDGWMRT 422 (549)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (549)
+. .... . ....+++|.|.++++++|+|++.+ ++++.|+.|||+|+ |+.++.||+++|+.+.+.| .+|||+|
T Consensus 310 ~~-~~~~-~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~T 383 (504)
T 1t5h_X 310 MN-SLYM-R---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRT 383 (504)
T ss_dssp EE-EEEE-E---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEE
T ss_pred cc-cccc-c---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCcccc
Confidence 32 2221 1 235578999999999999994432 89999999999999 9999999999999999999 6899999
Q ss_pred CceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 008895 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIME 502 (549)
Q Consensus 423 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~ 502 (549)
||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+++++...+.+++++
T Consensus 384 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 463 (504)
T 1t5h_X 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDT 463 (504)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHH
T ss_pred CcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999998777778999999
Q ss_pred HHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 503 FVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 503 ~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
++++ +|+.|++|+.|+++++||+|++|||+|++|++++.
T Consensus 464 ~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 464 FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9998 99999999999999999999999999999999874
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.4e-80 Score=646.93 Aligned_cols=495 Identities=21% Similarity=0.304 Sum_probs=426.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.+.|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~ 73 (512)
T 3fce_A 1 MKLLEQIEKWAAET----PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVK 73 (512)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.+++++++++++|++...... ......+ ....+...................+++++++
T Consensus 74 ~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 149 (512)
T 3fce_A 74 AGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT--DLPVRIV--SEDNLKDIFFTHKGNTPNPEHAVKGDENFYI 149 (512)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--CCSSEEE--ETHHHHHHHHHTTTCCCCGGGSCCTTSEEEE
T ss_pred hCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc--cccccee--chhhhhhhcccccccCCCccccCCCCCeEEE
Confidence 99999999999999999999999999999998543211 1112222 2222222221111111122334567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~ 274 (549)
+|||||||.||+|+++|+++.+........+ ...+++++++.+|++|.+++...+.++..|+++++.+. +++..++
T Consensus 150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 228 (512)
T 3fce_A 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLF 228 (512)
T ss_dssp EEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHH
Confidence 9999999999999999999999888877777 57888999999999999999889999999999999876 7899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.++++++|+++++|+++..++.........++++|.+++||+++++++.+++.+.++++.+++.||+||++..+.....
T Consensus 229 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 308 (512)
T 3fce_A 229 ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV 308 (512)
T ss_dssp HHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence 99999999999999999999988877677778999999999999999999999999999999999999999877654322
Q ss_pred cC---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccC---CCCeeecCceEEE
Q 008895 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL---PDGWMRTGDLCYI 428 (549)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~ 428 (549)
.. ......++|+|.++++++|+| +++++++.|+.|||+|+|++++.||+++|+.+.+.|. .++||+|||+|++
T Consensus 309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 11 123457899999999999999 7899999999999999999999999999999998873 4679999999999
Q ss_pred ecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH----HHHHHHH
Q 008895 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE----AEIMEFV 504 (549)
Q Consensus 429 ~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~----~~i~~~l 504 (549)
++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++|++.+....+. +++++++
T Consensus 388 -~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l 466 (512)
T 3fce_A 388 -ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL 466 (512)
T ss_dssp -ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHH
T ss_pred -cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998888889999999876654443 5799999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
+++|+.|++|+.++++++||+|++|||+|++|++.+.+.+.+
T Consensus 467 ~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~ 508 (512)
T 3fce_A 467 NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH 508 (512)
T ss_dssp HTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred HhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence 999999999999999999999999999999999999877653
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.6e-79 Score=645.33 Aligned_cols=493 Identities=22% Similarity=0.320 Sum_probs=403.8
Q ss_pred CCHH-HHHhhcccCCCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 38 ISAV-DYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 38 ~~~~-~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
.|+. ++|..+++++ |+++|+++. ..++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|
T Consensus 55 ~n~~~~~l~~~a~~~----pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 55 FNFAYDVVDVYARDS----PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp CCHHHHTHHHHHHHC----TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHH
T ss_pred chHHHHHHHHHHhhC----CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 6776 8888889999 999999852 124689999999999999999998 999999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--HHHh-------cCCCeEEEecCC------chhhhhccc
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--HKLA-------KLKHRTILIDSP------EFDSMTMSW 178 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~-------~~~~~~~~~~~~------~~~~~~~~~ 178 (549)
||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+. ......+.++.. .+.+.....
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES 209 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHS
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhC
Confidence 9999999999999999999999999999999999987653 3222 112344545432 122222221
Q ss_pred CCCcccc--ccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHH
Q 008895 179 NSKHELD--RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRA 255 (549)
Q Consensus 179 ~~~~~~~--~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~ 255 (549)
....... .....++++++++|||||||.||+|.++|.+++.......... ...+.++++...|+.|..+++ .++.+
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (580)
T 3etc_A 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCVWGKLYGQ 288 (580)
T ss_dssp CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence 1110111 1245678999999999999999999999999888776655444 467889999999999887775 46788
Q ss_pred hhhccEEEEe--cCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCC
Q 008895 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333 (549)
Q Consensus 256 l~~g~~~~~~--~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~ 333 (549)
+..|+++++. ..+++..+++.|+++++|+++++|+++..|++. .....++++||.+++|||++++++.++|.+.+ +
T Consensus 289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g 366 (580)
T 3etc_A 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-G 366 (580)
T ss_dssp HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH-S
T ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh-C
Confidence 8899999887 468999999999999999999999999999886 33455689999999999999999999999988 7
Q ss_pred CcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec-----CCcccccCCCcc
Q 008895 334 VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-----PTIMKGYVGEPE 408 (549)
Q Consensus 334 ~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g-----~~~~~gy~~~~~ 408 (549)
+++++.||+||++..+.... ......+++|+|+++++++|+| +++++++.|+.|||+|+| +.++.||+++|+
T Consensus 367 ~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~ 443 (580)
T 3etc_A 367 IKLMEGFGQTETVVTIATFP--WMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPE 443 (580)
T ss_dssp CCCEEEECCTTSSCCEECCT--TSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHH
T ss_pred CeEecccccccccceeecCC--CCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHh
Confidence 89999999999987665532 2345678999999999999999 669999999999999997 789999999999
Q ss_pred ccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEE
Q 008895 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488 (549)
Q Consensus 409 ~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~ 488 (549)
.+.+.| .+|||+|||+|++|+||+++++||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+
T Consensus 444 ~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv 522 (580)
T 3etc_A 444 RTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIV 522 (580)
T ss_dssp HHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEE
Confidence 999999 4899999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred eCCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 489 RQPHSSLN---EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 489 ~~~~~~~~---~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+.++...+ .++|+++++++|++|++|+.|+++++||+|++|||+|++|++++++
T Consensus 523 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 523 LTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred ECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 88775544 3689999999999999999999999999999999999999999875
No 11
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.4e-81 Score=658.36 Aligned_cols=495 Identities=24% Similarity=0.321 Sum_probs=334.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 30 ~tl~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 102 (544)
T 3o83_A 30 QPLTRILTVGVQSH----PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLK 102 (544)
T ss_dssp CCTTHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 79999999999999 999999998 8999999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--------HHHhc--CCC-eEEEecCC----chhhhhcccCCCc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAK--LKH-RTILIDSP----EFDSMTMSWNSKH 182 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~--~~~-~~~~~~~~----~~~~~~~~~~~~~ 182 (549)
+|++++|+++.++.+++.+++++++++++|++.... ..+.. ... .++..+.. .+.+........
T Consensus 103 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 181 (544)
T 3o83_A 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAET- 181 (544)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSS-
T ss_pred hCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccc-
Confidence 999999999999999999999999999999987643 12221 112 23333322 122222211111
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhcc
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME 260 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g~ 260 (549)
........++++++++|||||||.||+|+++|+++.+.+......+ +..+++++++.+|++|.+++. ..+.++..|+
T Consensus 182 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~ 260 (544)
T 3o83_A 182 FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260 (544)
T ss_dssp CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTC
T ss_pred ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHcCC
Confidence 1112345678999999999999999999999999999998887777 578899999999999999884 5788999999
Q ss_pred EEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEccc
Q 008895 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~y 340 (549)
++++.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++.+.+ ++.+++.|
T Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~Y 339 (544)
T 3o83_A 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVF 339 (544)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeee
Confidence 99999999999999999999999999999999999887665556688999999999999999999999998 89999999
Q ss_pred CccccccceecccCcCCCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 341 GLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
|+||++..+... ........+++|+|+ ++.+++|+| +++++++.|+.|||+|+|++++.||+++|+.+...|..+||
T Consensus 340 G~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 417 (544)
T 3o83_A 340 GMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNY 417 (544)
T ss_dssp ECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCC
T ss_pred ccccccceeecC-CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCC
Confidence 999987544332 112222346789996 899999999 88999999999999999999999999999999999988999
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAE 499 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~ 499 (549)
|+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++|+..+ ...+.++
T Consensus 418 ~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~ 496 (544)
T 3o83_A 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVV 496 (544)
T ss_dssp EEEEEEEEECTTSCEEEEEEEC----------------------------------------------------------
T ss_pred eEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999888999999998775 4456788
Q ss_pred HHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 500 IMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 500 i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
+++++++ +|+.|++|+.|+++++||+|++|||+|++|++++.+.+.
T Consensus 497 l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 543 (544)
T 3o83_A 497 LRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTT 543 (544)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhccC
Confidence 9999998 799999999999999999999999999999999987654
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.4e-79 Score=655.18 Aligned_cols=495 Identities=21% Similarity=0.289 Sum_probs=421.9
Q ss_pred HHHHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 40 AVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 40 ~~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
+.++|.++++++ |+++|+++. ..++++||+||.++++++|++|++ +|+++||+|+++++|++++++++|||
T Consensus 78 ~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~ 152 (652)
T 1pg4_A 78 AANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLAC 152 (652)
T ss_dssp HHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHhccC----CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 566777888888 999999873 124789999999999999999999 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH------------H-HhcC---C-CeEEEecCC---------
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH------------K-LAKL---K-HRTILIDSP--------- 169 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------------~-~~~~---~-~~~~~~~~~--------- 169 (549)
+++|++++|+++.++.+++.+++++++++++|+++.... . +... . ..++.++..
T Consensus 153 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 232 (652)
T 1pg4_A 153 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG 232 (652)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBT
T ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCC
Confidence 999999999999999999999999999999999875421 1 1111 1 234444321
Q ss_pred ---chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHh-hccCCCCCCCcEEEEecChhh
Q 008895 170 ---EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFH 245 (549)
Q Consensus 170 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~~~~pl~~ 245 (549)
.|.++...... ........++++++|+|||||||.||||+++|++++...... ...+ ...++|++++.+|++|
T Consensus 233 ~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~ 309 (652)
T 1pg4_A 233 RDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCTADVGW 309 (652)
T ss_dssp TEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTS
T ss_pred CceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEccCCee
Confidence 13333222111 112233457899999999999999999999999988766433 3334 4678899999999999
Q ss_pred HHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecCC
Q 008895 246 IYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAP 318 (549)
Q Consensus 246 ~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge~ 318 (549)
.+|+ +.++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||+
T Consensus 310 ~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred eechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 9998 678899999999999864 588999999999999999999999999988654 344568999999999999
Q ss_pred CCHHHHHHHHHhCC--CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec
Q 008895 319 LGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396 (549)
Q Consensus 319 l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g 396 (549)
+++++++++.+.++ ++.+++.||+||++..++...........+++|+|++|++++|+| +++++++.|+.|||+|+|
T Consensus 390 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g 468 (652)
T 1pg4_A 390 INPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD 468 (652)
T ss_dssp CCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred CCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence 99999999999983 289999999999987665533222334668999999999999999 678999999999999999
Q ss_pred --CCcccccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEE
Q 008895 397 --PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472 (549)
Q Consensus 397 --~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv 472 (549)
|+++.|||++++.+...+.. +|||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.+||+|.+|+|+
T Consensus 469 ~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 548 (652)
T 1pg4_A 469 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548 (652)
T ss_dssp CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEE
T ss_pred CCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 79999999999988777643 78999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 473 PYPDEEAGQMPMAFVVRQPHSSLN---EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 473 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+.+++..++.+++||+++++...+ .++|+++|+++|++|++|+.|+++++||+|++|||+|++|++++...
T Consensus 549 g~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 999888889999999998765544 47899999999999999999999999999999999999999998764
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=9e-79 Score=635.75 Aligned_cols=492 Identities=21% Similarity=0.294 Sum_probs=428.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.+.|.++++++ |+++|+++. ++++||+||.++++++|++|++..|.++|++|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETY----PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 58999999999999 999999997 899999999999999999998745888999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|+++.++.+++.+++++++++++|++..............+ .+.++....... ........+++++++
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~a~i 148 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS-VSQDQWVKEHETFYI 148 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC-CCGGGSCCTTSEEEE
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC-ccccccCCCCCeEEE
Confidence 99999999999999999999999999999997654221111111121 122222221111 122234567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~ 274 (549)
+|||||||.||+|+++|+++.+........+ ....++++++.+|++|.+++...+.++..|+++++.+. +++..++
T Consensus 149 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 227 (511)
T 3e7w_A 149 IYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF 227 (511)
T ss_dssp EEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999999888877777 46788999999999999999888999999999999875 6899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.++++++|+++++|+++..++.........++++|.+++||+++++++.+++.+.++++.+++.||+||++..+.....
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 307 (511)
T 3e7w_A 228 EELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307 (511)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEE
T ss_pred HHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEec
Confidence 99999999999999999999998877667778999999999999999999999999999999999999999877654322
Q ss_pred cC---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-CC--eeecCceEEE
Q 008895 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYI 428 (549)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~~--~~~TGD~~~~ 428 (549)
.. ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.+...|.. +| ||+|||+|++
T Consensus 308 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 308 TNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp CHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred cccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 11 223456799999999999999 66999999999999999999999999999999998842 23 7999999999
Q ss_pred ecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH----HHHHHHH
Q 008895 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE----AEIMEFV 504 (549)
Q Consensus 429 ~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~----~~i~~~l 504 (549)
+||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.+....+. ++|++++
T Consensus 387 -~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l 465 (511)
T 3e7w_A 387 -QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKEL 465 (511)
T ss_dssp -ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHH
T ss_pred -cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999998888899999999887654443 6799999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++|+.|++|+.++++++||+|++|||+|++|++++.+..
T Consensus 466 ~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 466 AASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp HHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 9999999999999999999999999999999999886543
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.1e-80 Score=649.67 Aligned_cols=492 Identities=24% Similarity=0.382 Sum_probs=385.3
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la 114 (549)
+.++.++|.++++++ |+++|++.. ..++++||+||.++++++|++|++ .|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 369999999999999 999999852 125799999999999999999998 9999999999999999999999999
Q ss_pred HHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CC-eEEEecCC------chhhhhcccCCCc
Q 008895 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMTMSWNSKH 182 (549)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~ 182 (549)
|+++|++++|++|.++.+++.+++++++++++|++......+... .. .++.++.. .+.+......
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA--- 168 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC---
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC---
Confidence 999999999999999999999999999999999998876554321 12 23333322 1222221111
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhh--ccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhcc
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF--ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~ 260 (549)
......++++++++|||||||.||+|+++|+++........ ..+ ...+.|++++.+|++|.+++...+.++..|+
T Consensus 169 --~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~ 245 (541)
T 1v25_A 169 --DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245 (541)
T ss_dssp --CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHHTHHHHHHHHTC
T ss_pred --CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHHHHHHHHHhcCc
Confidence 11234568999999999999999999999999987766532 223 4678899999999999999977788999999
Q ss_pred EEEEecC-cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 261 TAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 261 ~~~~~~~-~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
++++.+. +++..+++.|+++++|+++++|+++..|++.......+++++|.+++||+++++++.+++ +.+ ++++++.
T Consensus 246 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~ 323 (541)
T 1v25_A 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQG 323 (541)
T ss_dssp EEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeec
Confidence 9999864 799999999999999999999999999987654444568999999999999999999999 666 8999999
Q ss_pred cCccccccceecccCcCC---------CCCCCccccccCCcEEEEEcCCCCCcCCC--CCcceEEEecCCcccccCCCcc
Q 008895 340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPE 408 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~ 408 (549)
||+||++.+++....... ....+++|+|+++++++|+| +++++++. ++.|||+|+|++++.||+++|+
T Consensus 324 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~ 402 (541)
T 1v25_A 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEE 402 (541)
T ss_dssp EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHH
T ss_pred ccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChh
Confidence 999999887665322110 01346899999999999999 66788874 3689999999999999999999
Q ss_pred ccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEE
Q 008895 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488 (549)
Q Consensus 409 ~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~ 488 (549)
.|...|..+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+
T Consensus 403 ~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv 482 (541)
T 1v25_A 403 ATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVV 482 (541)
T ss_dssp HHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-
T ss_pred hhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999888899999998
Q ss_pred eCCCCCCCHHHHHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 489 RQPHSSLNEAEIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 489 ~~~~~~~~~~~i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+. +...+.+++++++++ +|+.|++|+.++++++||+|++|||+|++|++++.+.
T Consensus 483 ~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 483 PR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp -------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 76 344567899999999 8999999999999999999999999999999988654
No 15
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=6e-80 Score=691.56 Aligned_cols=520 Identities=38% Similarity=0.600 Sum_probs=358.9
Q ss_pred CCCceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCC
Q 008895 17 SATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (549)
Q Consensus 17 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~ 96 (549)
....+|++..++.++|. ..|+.++|.++++++ |+++|+++..+++++||+||.++++++|++|++ .|+++||
T Consensus 43 ~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd 114 (979)
T 3tsy_A 43 NSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEF----ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQND 114 (979)
T ss_dssp --CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGT----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTC
T ss_pred CCCceeecCCCCCCCCC---CCCHHHHHHHHHHhC----CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCcC
Confidence 34667888777777764 379999999999999 999999997667899999999999999999999 8999999
Q ss_pred EEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHh----cCCCeEEEecCC---
Q 008895 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSP--- 169 (549)
Q Consensus 97 ~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~--- 169 (549)
+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+. .....++.++..
T Consensus 115 ~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (979)
T 3tsy_A 115 VVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESV 194 (979)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTS
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccc
Confidence 9999999999999999999999999999999999999999999999999999987654433 234445554432
Q ss_pred -------chhhhhcccCCC-ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC---CCCCCCcEEE
Q 008895 170 -------EFDSMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVSPAVML 238 (549)
Q Consensus 170 -------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~ 238 (549)
.+.++....... .........++++++|+|||||||.||+|+++|+++++.+....... ....++++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l 274 (979)
T 3tsy_A 195 PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL 274 (979)
T ss_dssp CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEE
T ss_pred cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEE
Confidence 122222111100 01122345679999999999999999999999999998887655432 1467789999
Q ss_pred EecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecC
Q 008895 239 FTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317 (549)
Q Consensus 239 ~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge 317 (549)
+.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+
T Consensus 275 ~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 275 CVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp ECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSC
T ss_pred EECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCC
Confidence 99999999999 55678899999999999999999999999999999999999999999987767778999999999999
Q ss_pred CCCHHHHHHHHHhCCCCcEEcccCccccccceecccC---cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEE
Q 008895 318 PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (549)
++++++.+++.+.+|++++++.||+||++.+++.... .......+++|+|+++++++|+|++++++++.|+.|||+|
T Consensus 355 ~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 434 (979)
T 3tsy_A 355 PLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICI 434 (979)
T ss_dssp CCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEE
Confidence 9999999999999999999999999999977654321 2223456789999999999999998999999999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEee
Q 008895 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474 (549)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~ 474 (549)
+|++++.||+++|+.|.+.|..+|||+|||+|+++++|+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~ 514 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAM 514 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------
T ss_pred ECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 475 ~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++..++.++++|+..++...+.++++++++++|+.|++|+.++++++||+|++|||+|++|++++.++.
T Consensus 515 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 515 KEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 9888889999999987776778899999999999999999999999999999999999999999987654
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.4e-80 Score=645.64 Aligned_cols=490 Identities=28% Similarity=0.397 Sum_probs=328.9
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
+.|+.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 5 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 5 DFTLADVYRRNAALF----PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CCCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 389999999999999 999999997 8999999999999999999998 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHh----cC-CC-eEEEecCC--chhhhhcccCCCccccccc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KL-KH-RTILIDSP--EFDSMTMSWNSKHELDRAK 188 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 188 (549)
++|++++|++|.++.+++.+++++++++++|++......+. .. .. .++.++.. .+..+..... ........
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS-DTPFSAPE 156 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC-CSCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC-CCCCCcCC
Confidence 99999999999999999999999999999999988766522 11 11 23333221 1222221111 11122334
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCc
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~ 268 (549)
..++++++++|||||||.||+|.++|+++.+........+ ...++++++..+|++|.+++...+.++..|+..++...+
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEeccc
Confidence 5678999999999999999999999999999988877777 578899999999999999997777766677777776688
Q ss_pred CHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccc
Q 008895 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (549)
Q Consensus 269 ~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 348 (549)
++..+++.|+++++|+++++|+++..+++.. ....++++|.++.+|++ ++.+.+.+.++++.+++.||+||++.+
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGL 310 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence 9999999999999999999999999998866 34457899999999987 888999999999999999999999887
Q ss_pred eecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEE
Q 008895 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (549)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~ 428 (549)
+....... ...++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+...|. +|||+|||+|++
T Consensus 311 ~~~~~~~~---~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~ 385 (509)
T 3ivr_A 311 STFAPYRD---RPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385 (509)
T ss_dssp EEEEEGGG---STTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEE
T ss_pred cccCcccc---CCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEE
Confidence 66543222 234599999999999999 6699999999999999999999999999999999995 899999999999
Q ss_pred ecCCeEEEEccc--CCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 008895 429 DEDGFLFIVDRL--KDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506 (549)
Q Consensus 429 ~~~g~~~~~GR~--~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~ 506 (549)
+++|++++.||+ ||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++..++...+.+++++++++
T Consensus 386 ~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 465 (509)
T 3ivr_A 386 DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVAS 465 (509)
T ss_dssp CTTSCEEEEEEC--------------------------------------------------------------------
T ss_pred CCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999888899999999887777788999999999
Q ss_pred cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 507 QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 507 ~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
+|+.|++|+.|+++++||+|++|||+|++|++++.+...
T Consensus 466 ~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 466 LIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp ---------------------------------------
T ss_pred hCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 999999999999999999999999999999999987654
No 17
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.7e-78 Score=636.65 Aligned_cols=479 Identities=19% Similarity=0.262 Sum_probs=414.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 39 ~~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 39 KTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC--CeEEEecCCchhhhhcccCCCccccccccCCCCEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (549)
+|++++|++|.++.+++.+++++++++++|++......+.... ..+..++...+.. ... ........+++++
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~d~a 185 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---REG---TNLHVPSKSTDLA 185 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT---SCC---SCCCCCCCTTSEE
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc---ccC---ccCCCCCCCCCeE
Confidence 9999999999999999999999999999999987766554432 2233333221110 000 1112234678999
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~ 272 (549)
+++|||||||.||||+++|+++.+........+ ...++|+++..+|++|..+++..+.++..|+++++... +++..
T Consensus 186 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 264 (563)
T 1amu_A 186 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264 (563)
T ss_dssp EEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred EEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence 999999999999999999999998887776666 46788999999999999998888899999999999865 68999
Q ss_pred HHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecc
Q 008895 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (549)
Q Consensus 273 ~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 352 (549)
+++.++++++|+++++|+++..+... .++++|.+++||+++++++.+++.+. +.+++.||+||++..+...
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTW 335 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheee
Confidence 99999999999999999988766432 46899999999999999999998774 6899999999998766543
Q ss_pred cCcC-CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeecCce
Q 008895 353 VGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGDL 425 (549)
Q Consensus 353 ~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------~~~~~TGD~ 425 (549)
.... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 3222 223557899999999999999 77899999999999999999999999999999888853 359999999
Q ss_pred EEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH
Q 008895 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVA 505 (549)
Q Consensus 426 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~ 505 (549)
|++|+||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.++...++.++++++... ..+.++|+++++
T Consensus 415 g~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~ 492 (563)
T 1amu_A 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFSS 492 (563)
T ss_dssp EEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHHHHH
T ss_pred EEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888889999998763 467899999999
Q ss_pred hcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 506 RQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 506 ~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++|+.|++|+.|+++++||+|++|||+|++|++....
T Consensus 493 ~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 529 (563)
T 1amu_A 493 EELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLT 529 (563)
T ss_dssp HHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCC
T ss_pred hhCchhhCCcEEEEecccCCCCCcChhHHhcCCcccc
Confidence 9999999999999999999999999999999998764
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.5e-78 Score=636.22 Aligned_cols=494 Identities=21% Similarity=0.288 Sum_probs=414.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.+.|.+.++++ |+++|+.+. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 4 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQ----ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 8999999999999999999999 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.+++++++++++|++++....+.. ...+.+. .+........ .........+++++++
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~d~a~i 150 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--ISLVSLS--EIESAKLAEM--PYERTHSVKGDDNYYI 150 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--SEEEEHH--HHHHHHHHTC--CCCCSSCCCTTSEEEE
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc--Ccccchh--hhhhcccccC--CcccCCCCCCCCcEEE
Confidence 99999999999999999999999999999998865432221 1222211 1111111111 0112234567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccC-CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCc---CHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKMM 273 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~---~~~~~ 273 (549)
+|||||||.||+|+++|+++.+......... ......++++...|++|..++...+.++..|+++++.+.. ++..+
T Consensus 151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 230 (521)
T 3l8c_A 151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230 (521)
T ss_dssp EECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHH
T ss_pred EEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHH
Confidence 9999999999999999999998877665542 2467788999999999999888888999999999998764 89999
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
++.+.++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.++++.+++.||+||++..+....
T Consensus 231 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 310 (521)
T 3l8c_A 231 FTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIE 310 (521)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceee
Confidence 99999999999999999999998877666677899999999999999999999999999999999999999987665432
Q ss_pred CcC---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCcccccccc---CCCCeeecCceEE
Q 008895 354 GPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---LPDGWMRTGDLCY 427 (549)
Q Consensus 354 ~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~ 427 (549)
... .....+++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+.+.| ..+|||+|||+|+
T Consensus 311 ~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~ 389 (521)
T 3l8c_A 311 ITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGS 389 (521)
T ss_dssp ECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEE
T ss_pred cccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEE
Confidence 111 123456899999999999999 779999999999999999999999999999999887 3568999999999
Q ss_pred EecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCC-CCceeEEEEEeCCCCCCC-------HHH
Q 008895 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE-AGQMPMAFVVRQPHSSLN-------EAE 499 (549)
Q Consensus 428 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~-~~~~~~~~v~~~~~~~~~-------~~~ 499 (549)
+|++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++..+.. .++.++++|+.+++...+ .++
T Consensus 390 ~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~ 469 (521)
T 3l8c_A 390 LTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA 469 (521)
T ss_dssp ECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHH
T ss_pred EeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHH
Confidence 999999999999999999999999999999999999999999999887544 457899999988764321 578
Q ss_pred HHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 500 IMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 500 i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
|+++++++|+.|++|+.|+++++||+|++|||||++|++++.+...
T Consensus 470 l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 470 IKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp HHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred HHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 9999999999999999999999999999999999999999987754
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2e-79 Score=648.52 Aligned_cols=483 Identities=22% Similarity=0.269 Sum_probs=325.9
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 74 ~~~l~~~l~~~a~~~----pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 146 (570)
T 4gr5_A 74 GACVHELFEAQAARA----PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVL 146 (570)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 368999999999999 999999997 8899999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
++|++++|++|.++.+++.+++++++++++|++......+.. ...+.+....... . ..........++++++
T Consensus 147 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~-----~-~~~~~~~~~~~~d~a~ 218 (570)
T 4gr5_A 147 KAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAASD-----A-PAGNLATGVGPEDVAC 218 (570)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC-------------CCCCCCCCCTTSEEE
T ss_pred HHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeecccccc-----c-cccccCCCCCCCCeEE
Confidence 999999999999999999999999999999999876544322 1222222111000 0 0011223456789999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEec--CcCHHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~--~~~~~~~~ 274 (549)
|+|||||||.||+|+++|+++.+.... .... ...++++++..+|++|..+.+.++.++..|+++++.+ .+++..++
T Consensus 219 i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 296 (570)
T 4gr5_A 219 VMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG 296 (570)
T ss_dssp EECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHH
T ss_pred EEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHH
Confidence 999999999999999999999776654 2333 5678899999999998777778889999999999986 47899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.|+++++|+++++|+++..+++... ..++++|.+++||+++++++.+++.+.++++.+++.||+||++.+......
T Consensus 297 ~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 373 (570)
T 4gr5_A 297 ELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373 (570)
T ss_dssp HHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeee
Confidence 99999999999999999999987543 347899999999999999999999999989999999999999876654322
Q ss_pred c--CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCC--------CeeecCc
Q 008895 355 P--DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--------GWMRTGD 424 (549)
Q Consensus 355 ~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~--------~~~~TGD 424 (549)
. .......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.|.+.|..+ |||+|||
T Consensus 374 ~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 374 VAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp CGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred cccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 1 1223446799999999999999 779999999999999999999999999999999988644 7999999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC-CCCCHHHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH-SSLNEAEIMEF 503 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~-~~~~~~~i~~~ 503 (549)
+|++|+||++++.||+||+||++|++|+|.|||++|.+||+|.+++|++.++...++.++++|+.++. ...+.++|+++
T Consensus 453 lg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~ 532 (570)
T 4gr5_A 453 LARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRH 532 (570)
T ss_dssp EEEECTTSCEEEEEC-----------------------------------------------------------------
T ss_pred eEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888899999987643 34677899999
Q ss_pred HHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 504 VARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 504 l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
|+++|+.|++|..++++++||+|++|||+|++|++..
T Consensus 533 l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 533 VAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp -------------------------------------
T ss_pred HHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 9999999999999999999999999999999998753
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4e-78 Score=646.95 Aligned_cols=497 Identities=20% Similarity=0.312 Sum_probs=417.2
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhH-HhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~-~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
++.++|.++++++ |+++|+++. ..++++||+||.++++++|+.|+ + +|+++||+|+|+++|++++++++|
T Consensus 83 ~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 83 ACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp HHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHHHHHHH
T ss_pred HHHHHHHHHhccC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3566777888888 999999973 23578999999999999999999 7 899999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH---------HHh----cC-CC-eEEEecCC---------
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLA----KL-KH-RTILIDSP--------- 169 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~----~~-~~-~~~~~~~~--------- 169 (549)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+. .. .. .+++++..
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 237 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHA 237 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCS
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCC
Confidence 99999999999999999999999999999999999876421 111 11 11 34444321
Q ss_pred ----chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhh-ccCCCCCCCcEEEEecChh
Q 008895 170 ----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASSPKRVSPAVMLFTMPYF 244 (549)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~~pl~ 244 (549)
.|.++..... .........++++++|+|||||||.||||+++|++++....... ..+ ...++|++++.+|++
T Consensus 238 ~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~ 314 (663)
T 1ry2_A 238 PRDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-DTHQEDVFFTAGDIG 314 (663)
T ss_dssp SSEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-CCCSSCEEEECSCTT
T ss_pred CccccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-CCCCCcEEEEcCCcH
Confidence 1222222111 01122334678999999999999999999999999887664433 333 467889999999999
Q ss_pred hHHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecC
Q 008895 245 HIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAA 317 (549)
Q Consensus 245 ~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge 317 (549)
|.++. +.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|||
T Consensus 315 ~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 315 WITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp SHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred HhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 99998 677899999999999864 588999999999999999999999999987654 23456899999999999
Q ss_pred CCCHHHHHHHHHhCC--CCcEEcccCccccccceecccC-cCCCCCCCccccccCCcEEEEEcCCCCCcCCC-CCcceEE
Q 008895 318 PLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKEGELS 393 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~~Gel~ 393 (549)
++++++++++.+.++ ++.+++.||+||++..++.... .......+++|+|++|++++|+|++++++++. |+.|||+
T Consensus 395 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~ 474 (663)
T 1ry2_A 395 PIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLA 474 (663)
T ss_dssp CCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEE
Confidence 999999999999883 3899999999999876554322 22345678999999999999999658999988 9999999
Q ss_pred Eec--CCcccccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceE
Q 008895 394 IRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469 (549)
Q Consensus 394 v~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~ 469 (549)
|+| |+++.|||++++.+...|.. +|||+|||+|++|+||++++.||+||+||++|++|++.|||++|.+||+|.+|
T Consensus 475 i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea 554 (663)
T 1ry2_A 475 VKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC 554 (663)
T ss_dssp ESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEE
T ss_pred EecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceE
Confidence 999 58999999999988877753 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcc
Q 008895 470 AVIPYPDEEAGQMPMAFVVRQPHSS---L-N------EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539 (549)
Q Consensus 470 ~vv~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~ 539 (549)
+|++.+++..++.+++||+++++.. . + .++|+++++++|++|++|+.|+++++||+|++|||+|++|+++
T Consensus 555 ~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 634 (663)
T 1ry2_A 555 AVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKI 634 (663)
T ss_dssp EEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHS
T ss_pred EEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHH
Confidence 9999998888899999999876543 2 2 5789999999999999999999999999999999999999999
Q ss_pred cCcC
Q 008895 540 AVPS 543 (549)
Q Consensus 540 ~~~~ 543 (549)
+...
T Consensus 635 ~~~~ 638 (663)
T 1ry2_A 635 LAGE 638 (663)
T ss_dssp CC--
T ss_pred HcCC
Confidence 8775
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3e-77 Score=627.25 Aligned_cols=485 Identities=24% Similarity=0.343 Sum_probs=405.7
Q ss_pred CC-HHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 38 IS-AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 38 ~~-~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
+| +.+++.++++ + |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 23 ~~~~~~~l~~~~~-~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 94 (529)
T 2v7b_A 23 FNFAAYLFRLNET-R----AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGAL 94 (529)
T ss_dssp CCHHHHHHHHTGG-G----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-c----CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 45 7788888888 8 999999987 7899999999999999999998 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-------CCeEEEecCC--------chhhhhcccCCC
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSP--------EFDSMTMSWNSK 181 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~ 181 (549)
++|++++|+++.++.+++.+++++++++++|++......+... ...++.++.. .+.++......
T Consensus 95 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (529)
T 2v7b_A 95 YAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP- 173 (529)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC-
T ss_pred HcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC-
Confidence 9999999999999999999999999999999998766544321 1233333321 23333321111
Q ss_pred ccccccccCCCCEEEEEccCCCCCccchhhhcHHHH-HHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHHhhhc
Q 008895 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALM 259 (549)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~g 259 (549)
........++++++++|||||||.||+|+++|+++ .+........+ ...++++++..+|++|.+++. ..+.++..|
T Consensus 174 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 174 -AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp -CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred -cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 11122356789999999999999999999999999 55554444334 567889999999999999984 456789999
Q ss_pred cEEEEe-cCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 260 ETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 260 ~~~~~~-~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
+++++. ..+++..+++.+.++++|+++++|+++..++...........++|.+++||+++++++.+++.+.+ ++.+++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999987 568999999999999999999999999999886544333134899999999999999999999988 889999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~ 418 (549)
.||+||++.+.+.... .....+++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+...|. ++
T Consensus 331 ~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~ 406 (529)
T 2v7b_A 331 GIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GE 406 (529)
T ss_dssp EEECTTTSSEEEECCT--TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TT
T ss_pred eEchhhcCceeecccc--CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cC
Confidence 9999999766554322 224568999999999999999 7799999999999999999999999999999999884 89
Q ss_pred eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC---
Q 008895 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL--- 495 (549)
Q Consensus 419 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~--- 495 (549)
||+|||+|+++++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++. +...++.++++|+..++...
T Consensus 407 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~ 485 (529)
T 2v7b_A 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEI 485 (529)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHH
T ss_pred CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999 55667888999998765432
Q ss_pred CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcc
Q 008895 496 NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539 (549)
Q Consensus 496 ~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~ 539 (549)
..++|+++++++|+.|++|+.|+++++||+|++||++|++|+++
T Consensus 486 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 486 LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp HHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred HHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 24689999999999999999999999999999999999999974
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.2e-78 Score=643.51 Aligned_cols=477 Identities=18% Similarity=0.173 Sum_probs=400.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++|++|+++++|++++++++|||++
T Consensus 27 ~tl~~~~~~~a~~~----Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lailk 99 (620)
T 4dg8_A 27 PTVVARFSEMAALH----PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILL 99 (620)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 69999999999999 999999998 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.++++++++++++++......... .....+. .. .............+++++++
T Consensus 100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~-----~~---~~~~~~~~~~~~~~~d~a~i 169 (620)
T 4dg8_A 100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVPVR-----HL---PAAPASVARPCFAADQIAYI 169 (620)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEEGG-----GC---CCCCCCSSCCCCCTTSEEEE
T ss_pred hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceeeec-----cC---CcCCccccCCCCCCCCeEEE
Confidence 99999999999999999999999999999976543221111 1111111 00 00011112233467899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEec--CcCHHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMMLK 275 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~--~~~~~~~~~ 275 (549)
+|||||||.||||+++|+++.+.... ...+ ...++++++..+|++|..+++.++.++..|+++++.+ .+++..+++
T Consensus 170 iyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 247 (620)
T 4dg8_A 170 NFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQ 247 (620)
T ss_dssp EEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHH
T ss_pred EECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHH
Confidence 99999999999999999999876654 2333 4678899999999999999988999999999999964 579999999
Q ss_pred HHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCc
Q 008895 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355 (549)
Q Consensus 276 ~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~ 355 (549)
.|+++++|+++++|+++..+++.. ...++++|.+++|||++++++.+++.+.++++++++.||+||++.+++.....
T Consensus 248 ~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~ 324 (620)
T 4dg8_A 248 LIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVT 324 (620)
T ss_dssp HHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECC
T ss_pred HHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecc
Confidence 999999999999999999998643 23578999999999999999999999888899999999999998876543222
Q ss_pred --CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCC-------CeeecCceE
Q 008895 356 --DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-------GWMRTGDLC 426 (549)
Q Consensus 356 --~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-------~~~~TGD~~ 426 (549)
.......++|+|+++++++|+|++....++.|+.|||+|+|+++++||+++|+.|.+.|..+ +||+|||+|
T Consensus 325 ~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~ 404 (620)
T 4dg8_A 325 DDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRA 404 (620)
T ss_dssp TGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEE
T ss_pred ccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEE
Confidence 22335578999999999999995544458999999999999999999999999999999754 799999999
Q ss_pred EEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 008895 427 YIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506 (549)
Q Consensus 427 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~ 506 (549)
++++||+++++||+||+||++|++|+|.|||++|.+||+|.+|+|++.++...+..+ ++++... +++.+++++
T Consensus 405 ~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv-~~~~~~~------~~~~~~l~~ 477 (620)
T 4dg8_A 405 RYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL-CAWTGKA------DASPQALLR 477 (620)
T ss_dssp EECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE-EEEEECT------TCCCHHHHH
T ss_pred EECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE-EEEecCh------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876444444 4444321 234456778
Q ss_pred cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 507 QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 507 ~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+|+.|++|+.++++++||+|++|||||++|++++.+.
T Consensus 478 ~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 478 QLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp HSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred hChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 8999999999999999999999999999999887543
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.7e-77 Score=639.36 Aligned_cols=488 Identities=24% Similarity=0.352 Sum_probs=421.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++ |+++|++++ ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 27 ~~l~~~~~~~a~------pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 27 LPLTDILTRHAA------SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp CCTTHHHHTTTT------CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhC------CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 789999999876 789999998 8999999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--------HHHh--cCCCeEE-EecCCc---hhhhhcccCCCcc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA--KLKHRTI-LIDSPE---FDSMTMSWNSKHE 183 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~--~~~~~~~-~~~~~~---~~~~~~~~~~~~~ 183 (549)
+|++++|++|.++.+++.++++++++++++++.... ..+. ......+ ..+... +.+....... .
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 175 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAE--D 175 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCS--S
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccc--c
Confidence 999999999999999999999999999999987643 1111 1122222 222221 2222221111 1
Q ss_pred ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhccE
Q 008895 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMET 261 (549)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g~~ 261 (549)
.......++++++++|||||||.||||+++|+++.+.+......+ ...+++++++.+|++|.+++. ..+.++..|++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~ 254 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT 254 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence 122334678999999999999999999999999999888877766 467889999999999998884 58899999999
Q ss_pred EEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++.+..++..+++.++++++|+++++|+++..+++.... ....++++|.+++|||++++++.+++.+.+ ++++++.
T Consensus 255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9999888999999999999999999999999988765432 223689999999999999999999999998 8899999
Q ss_pred cCccccccceecccCcCCCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~ 418 (549)
||+||++..+.... ........++|.|+ ++.+++|+| +++++++.|+.|||+|+|+++++||+++|+.|.++|..++
T Consensus 334 YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~ 411 (617)
T 3rg2_A 334 FGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 411 (617)
T ss_dssp EEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS
T ss_pred eccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCC
Confidence 99999876544321 11112235789997 788999999 7899999999999999999999999999999999999999
Q ss_pred eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 008895 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA 498 (549)
Q Consensus 419 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~ 498 (549)
||+|||+|++++||.++++||+||+||++|++|+|.+||++|.+||+|.+++|++.++...++.++++++..+ ..+.+
T Consensus 412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~ 489 (617)
T 3rg2_A 412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAV 489 (617)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHH
T ss_pred ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999998888889999999875 46789
Q ss_pred HHHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 499 EIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 499 ~i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++++++++ .|+.|++|..++++++||+|++|||||++|++++.+
T Consensus 490 ~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 490 QVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 99999998 699999999999999999999999999999987643
No 24
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.8e-77 Score=630.82 Aligned_cols=493 Identities=23% Similarity=0.339 Sum_probs=417.8
Q ss_pred CC-HHHHHhhcccC-----CCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHHhc-CCCCCCEEEEEcCCCCh
Q 008895 38 IS-AVDYVSSLRAT-----LPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIE 107 (549)
Q Consensus 38 ~~-~~~~~~~~~~~-----~~~~~p~~~a~~~~~---~~~~~Ty~el~~~a~~~A~~L~~~~-g~~~g~~V~i~~~~~~~ 107 (549)
.+ +.+++.+.+++ + |+++|+++.. .++++||+||.++++++|++|++ . |+++||+|+++++|+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~----p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKR----PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSS----CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHH
T ss_pred ccHHHHHHHHHHhhccccCC----CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHH
Confidence 45 45777777777 8 9999998731 23789999999999999999998 7 99999999999999999
Q ss_pred HHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----C-CC-eEEEecCC------chhhhh
Q 008895 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L-KH-RTILIDSP------EFDSMT 175 (549)
Q Consensus 108 ~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~-~~-~~~~~~~~------~~~~~~ 175 (549)
+++++|||+++|++++|++|.++.+++.+++++++++++|+++.....+.. . .. .++.++.. .+.++.
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence 999999999999999999999999999999999999999999887665532 1 12 23444431 233332
Q ss_pred cccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHH--HHHHhhccCCCCCCCcEEEEecChhhHHHHH-HH
Q 008895 176 MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FC 252 (549)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~ 252 (549)
..... ........++++++|+|||||||.||+|.++|+ ++. ..... ..+ +..++|+++..+|++|.+++. .+
T Consensus 192 ~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 192 NEAST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHSCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTT
T ss_pred hcccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHH
Confidence 22111 111223467899999999999999999999999 544 33333 333 567889999999999999985 67
Q ss_pred HHHhhhccEEEEec--CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHh
Q 008895 253 FRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330 (549)
Q Consensus 253 ~~~l~~g~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~ 330 (549)
+.++..|+++++.. .+++..+++.|+++++|+++++|+++..+++.. ....+++++|.+++||+++++++.+++.+.
T Consensus 267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 88899999999886 689999999999999999999999999998763 334468899999999999999999999998
Q ss_pred CCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEe-----cCCcccccCC
Q 008895 331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-----GPTIMKGYVG 405 (549)
Q Consensus 331 ~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~-----g~~~~~gy~~ 405 (549)
+ ++.+++.||+||++..+.... ......+++|+|+++++++|+| +++++++.|+.|||+|+ |++++.||++
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~ 421 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECCT--TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred h-CCchhhccchhhcccceecCc--ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccC
Confidence 8 789999999999986655432 2234568999999999999999 67899999999999999 9999999999
Q ss_pred CccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEE
Q 008895 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485 (549)
Q Consensus 406 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~ 485 (549)
+++.+...| .++||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++
T Consensus 422 ~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a 500 (570)
T 3c5e_A 422 NPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKA 500 (570)
T ss_dssp CHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEE
Confidence 999999988 4899999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEeCCCC--CC---CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCC
Q 008895 486 FVVRQPHS--SL---NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 486 ~v~~~~~~--~~---~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
+|++.++. .. ..++|+++++++|+.|++|+.|+++++||+|++|||+|++|++++...+.+
T Consensus 501 ~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s~~ 566 (570)
T 3c5e_A 501 FVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGK 566 (570)
T ss_dssp EEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC----
T ss_pred EEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhhhc
Confidence 99987543 11 257899999999999999999999999999999999999999998766554
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.3e-77 Score=625.95 Aligned_cols=481 Identities=23% Similarity=0.346 Sum_probs=392.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ . +||+|+++++|++++++++|||++
T Consensus 1 mtl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~ 70 (501)
T 3ipl_A 1 MSLDFWLYKQAQQN----GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWL 70 (501)
T ss_dssp --CCCHHHHHHHHH----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 46778899999999 999999987 7899999999999999999998 4 899999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCeEEEec----C-------Cchhhh---hcccC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID----S-------PEFDSM---TMSWN 179 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~----~-------~~~~~~---~~~~~ 179 (549)
+|++++|+++.++.+++.+++++++++++|++.......... ....+... . ..+... .....
T Consensus 71 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (501)
T 3ipl_A 71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKE 150 (501)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------C
T ss_pred cCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccC
Confidence 999999999999999999999999999999987654332110 00000000 0 000000 00000
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhc
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g 259 (549)
...........++++++++|||||||.||+|.++|+++.+........+ ...+++++++.+|++|.+|+...+.++..|
T Consensus 151 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G 229 (501)
T 3ipl_A 151 SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229 (501)
T ss_dssp CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHHHHHHHHHcC
Confidence 0001112235678999999999999999999999999999888877777 577889999999999999998889999999
Q ss_pred cEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++++.+.+++..+++.|+++++|+++++|+++..|++...... .++|.+++||+++++++.+++.+. ++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp CEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred ceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 99999999999999999999999999999999999988664432 289999999999999999999884 8899999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
||+||++..+............+++|+|+++++++|+|++ .|+.|||+|+|+.++.||+++++.+.. | .+||
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~ 376 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGY 376 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTE
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCc
Confidence 9999998765543332233456789999999999999954 466799999999999999999999887 5 6899
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAE 499 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~ 499 (549)
|+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++.. ...+.++
T Consensus 377 ~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~ 454 (501)
T 3ipl_A 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQ 454 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHH
T ss_pred eecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999864 3568899
Q ss_pred HHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 500 IMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 500 i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
++++++++|+.|++|+.|+++++||+|++|||+|++|++...+..
T Consensus 455 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 455 LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp HHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred HHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence 999999999999999999999999999999999999999876643
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=8.2e-78 Score=626.45 Aligned_cols=474 Identities=25% Similarity=0.387 Sum_probs=391.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.+.|.++++++| ||++|+++. ++++||+||.++++++|++|.. |++|+++++|++++++++|||++
T Consensus 22 ~tl~~~l~~~a~~~p---~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 22 SSLFPALSPAPTGAP---ADRPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp --CCTTTSSCCCSGG---GGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCC---CCCeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHHH
Confidence 578888899988882 349999998 8999999999999999988753 78999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.+++++++++++|++..............+.++... ..........+++++++
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~a~i 160 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRA----------RGAVPEDGADDGDPALV 160 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTC----------CCCCCCCCCCTTSEEEE
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccccc----------ccCCCCCCCCCCCeEEE
Confidence 99999999999999999999999999999998652111011122222222110 00112233567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKA 276 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~ 276 (549)
+|||||||.||+|+++|+++.+........+ ...+++++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 239 (505)
T 3nyq_A 161 VYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE 239 (505)
T ss_dssp EEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH
T ss_pred EeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH
Confidence 9999999999999999999999888777766 56788999999999999998 567899999999999999999999999
Q ss_pred HHHhceeeeeecHHHHHHHHhCCCCC---CCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 277 VEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 277 l~~~~~t~l~~~P~~l~~l~~~~~~~---~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
+ ++++|+++++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||++..+...
T Consensus 240 i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~- 316 (505)
T 3nyq_A 240 L-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVR- 316 (505)
T ss_dssp H-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-
T ss_pred H-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccC-
Confidence 9 889999999999999988743221 22467899999999999999999999987 88999999999998765543
Q ss_pred CcCCCCCCCccccccCCcEEEEEcCCCCCcCCC---CCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec
Q 008895 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430 (549)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~ 430 (549)
.......+++|+|+++++++|+| +++++++. |+.|||+|+|++++.||+++|+.+...|..+|||+|||+|++++
T Consensus 317 -~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~ 394 (505)
T 3nyq_A 317 -ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394 (505)
T ss_dssp -TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT
T ss_pred -CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC
Confidence 23334567899999999999999 66777765 89999999999999999999999999998899999999999999
Q ss_pred CCeEEEEccc-CCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC-CCCCCHHHHHHHHHhcC
Q 008895 431 DGFLFIVDRL-KDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP-HSSLNEAEIMEFVARQV 508 (549)
Q Consensus 431 ~g~~~~~GR~-~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~-~~~~~~~~i~~~l~~~l 508 (549)
+|.+++.||+ ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.+ ....+.++|+++|+++|
T Consensus 395 dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L 474 (505)
T 3nyq_A 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARL 474 (505)
T ss_dssp TSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHT
T ss_pred CccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhC
Confidence 9999999997 589999999999999999999999999999999999888999999999876 34567899999999999
Q ss_pred CCCCcccEEEEeCccCCCCCCcccHHHHHc
Q 008895 509 SPYKKIRRVAFINAIPKSAAGKILRMELRK 538 (549)
Q Consensus 509 ~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~ 538 (549)
+.|++|+.|+++++||+|++|||+|++|++
T Consensus 475 ~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 475 APHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp CGGGSCSEEEECSCCCC-------------
T ss_pred CCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 999999999999999999999999999986
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-74 Score=664.44 Aligned_cols=483 Identities=22% Similarity=0.275 Sum_probs=420.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++|++|+|++++++++++++|||++
T Consensus 464 ~~l~~~~~~~~~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailk 536 (1304)
T 2vsq_A 464 KPLTYWFKEAVNAN----PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLK 536 (1304)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC--CeEEEecCCchhhhhcccCCCccccccccCCCCEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (549)
+|+++||++|.++.+++.++++++++++++++........... ...+.++.. ..... . . ........+++++
T Consensus 537 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~--~-~~~~~~~~~~~~a 610 (1304)
T 2vsq_A 537 AGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFEE-Q--A-SDPATAIDPNDPA 610 (1304)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGGS-C--S-SCCCCCCCTTSEE
T ss_pred HCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--ccccc-c--c-CCCCCCCCCCCeE
Confidence 9999999999999999999999999999999987655433221 223333321 11111 0 1 1122345678999
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~ 272 (549)
+++|||||||.||||+++|+++.+. ......+ ...+.++++...|+.|..+.+.++.++..|+++++.+. .++..
T Consensus 611 yiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~ 688 (1304)
T 2vsq_A 611 YIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688 (1304)
T ss_dssp EEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred EEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence 9999999999999999999999876 3333444 56788999999999998888889999999999999864 68999
Q ss_pred HHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecc
Q 008895 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (549)
Q Consensus 273 ~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 352 (549)
+.+.|.++++|+++++|+++..+.+.. ...++++|.+++|||++++++.+++.+.+++.++++.||+||++.++...
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 765 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAH 765 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheee
Confidence 999999999999999999999997643 12367899999999999999999999988778999999999998876654
Q ss_pred cCcC--CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeecCc
Q 008895 353 VGPD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGD 424 (549)
Q Consensus 353 ~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------~~~~~TGD 424 (549)
.... ......++|+|++|++++|+| +.+++++.|+.|||+|+|+++++||+++|+.|.++|.. ++||+|||
T Consensus 766 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGD 844 (1304)
T 2vsq_A 766 VVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGD 844 (1304)
T ss_dssp ECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEE
T ss_pred eccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCC
Confidence 3222 223456899999999999999 67899999999999999999999999999999998853 35999999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV 504 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l 504 (549)
+|++++||.++++||+||+||++|++|+|.|||++|.++|+|.+++|++.++...+..++++++... ..+.+++++++
T Consensus 845 l~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l 922 (1304)
T 2vsq_A 845 LARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAEDVKAHL 922 (1304)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHHHHHHHH
T ss_pred eEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988878889999998764 46789999999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
+++|+.||+|..|+++++||+|+||||||++|++...
T Consensus 923 ~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 923 KKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp HHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred HHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 9999999999999999999999999999999987654
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4.8e-75 Score=619.48 Aligned_cols=495 Identities=22% Similarity=0.283 Sum_probs=413.9
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la 114 (549)
..|+.++|.++++++ |+++|+++.. .++++||+||.++++++|++|++ .|+++||+|+++++|++++++++||
T Consensus 10 ~~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA 84 (590)
T 3kxw_A 10 CQSLVDVVRLRALHS----PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLG 84 (590)
T ss_dssp CSSHHHHHHHHHHHC----TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhC----CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHH
Confidence 379999999999999 9999997632 24799999999999999999999 8999999999999999999999999
Q ss_pred HHHcCCeEccCCCCC---CHHHHHHHHhhcCCeEEEEcCccHHHHhcCC---C----eEEEecCCchhhhhcccCCCccc
Q 008895 115 LLSLGVIISPANPVN---TESEISRQIQLSNPVIAFATSSVVHKLAKLK---H----RTILIDSPEFDSMTMSWNSKHEL 184 (549)
Q Consensus 115 ~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~ 184 (549)
|+++|++++|++|.. +.+++.++++.+++++++++......+.... . ....+. .+.+.... ....
T Consensus 85 ~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~ 159 (590)
T 3kxw_A 85 CLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---LESIELNR--SSSW 159 (590)
T ss_dssp HHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---GGGCCGGG--GGGC
T ss_pred HHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---chhccccc--cccC
Confidence 999999999999988 4578999999999999999987766554321 0 011111 11110000 0011
Q ss_pred cccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHH-HHHHhhhccEEE
Q 008895 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAV 263 (549)
Q Consensus 185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~l~~g~~~~ 263 (549)
......++++++|+|||||||.||+|+++|+++.+.+......+ ...+++++++.+|++|.+|+.. ++.++..|++++
T Consensus 160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v 238 (590)
T 3kxw_A 160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI 238 (590)
T ss_dssp CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence 22345678999999999999999999999999999998887777 5788999999999999999965 788999999999
Q ss_pred EecCc----CHHHHHHHHHHhceeeeeecHHHHHHHHhCCC---CCCCCCCCceEEEEecCCCCHHHHHHHHHhCC----
Q 008895 264 VMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP---- 332 (549)
Q Consensus 264 ~~~~~----~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~---~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~---- 332 (549)
+.+++ ++..+++.|+++++|++.++|.++..+++... ....+++++|.+++||+++++++.+++.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~ 318 (590)
T 3kxw_A 239 MMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF 318 (590)
T ss_dssp ECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred EeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence 98765 78999999999999999999999988877532 34556899999999999999999999999873
Q ss_pred -CCcEEcccCccccccceecccCc-------------------------CCCCCCCccccccCCcEEEEEcCCCCCcCCC
Q 008895 333 -KVVLVQAYGLTESTAGVFRTVGP-------------------------DECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386 (549)
Q Consensus 333 -~~~l~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~ 386 (549)
+..+++.||+||++.+++..... ......+++|+|+++ ++|+|++++.+++.
T Consensus 319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~ 396 (590)
T 3kxw_A 319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDF 396 (590)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCT
T ss_pred CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCC
Confidence 45799999999999876643211 111233678999998 88899888999999
Q ss_pred CCcceEEEecCCcccccCCCccccccccCC------CC--eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHH
Q 008895 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLP------DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458 (549)
Q Consensus 387 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~ 458 (549)
|+.|||+|+|++++.||+++|+.|.+.|.. +| ||+|||+|++| +|.+++.||+||+||++|++|+|.+||+
T Consensus 397 g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 475 (590)
T 3kxw_A 397 DQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEF 475 (590)
T ss_dssp TBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHH
T ss_pred CCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHH
Confidence 999999999999999999999999998864 24 99999999999 9999999999999999999999999999
Q ss_pred HH-HcCCCcc--eEEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCCC-CCccc-EEEEe--CccCCCCCC
Q 008895 459 LL-LSHREVA--DAAVIPYPDEEAGQMPMAFVVRQPHS--SLNEAEIMEFVARQVSP-YKKIR-RVAFI--NAIPKSAAG 529 (549)
Q Consensus 459 ~l-~~~~~v~--~~~vv~~~~~~~~~~~~~~v~~~~~~--~~~~~~i~~~l~~~l~~-~~~p~-~i~~v--~~lP~t~~G 529 (549)
+| ..+|.|. +|+|++++++. ++.++++++..+.. ..+.+++.++++++|+. ++.|. .++++ ++||+|++|
T Consensus 476 ~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sG 554 (590)
T 3kxw_A 476 SLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSG 554 (590)
T ss_dssp HHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCH
T ss_pred HHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCc
Confidence 99 7889998 79999988765 67788888877653 34567899999998875 67775 55555 799999999
Q ss_pred cccHHHHHcccCcCCCC
Q 008895 530 KILRMELRKVAVPSGSS 546 (549)
Q Consensus 530 Kv~r~~l~~~~~~~~~~ 546 (549)
||+|++|++++.++.++
T Consensus 555 Ki~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 555 KIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp HHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 99999999999888764
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-74 Score=612.08 Aligned_cols=493 Identities=17% Similarity=0.190 Sum_probs=317.7
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCC--------CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVT--------GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~ 108 (549)
++|+.++|.++++++ |+++|+++... ++++||+||.++++++|+.|.+ .|+ +||+|+++++|++++
T Consensus 19 ~~tl~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 19 TVPPSHYIETWAKTH----PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp CCCTTHHHHHHHHHC----TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHH
T ss_pred cCCHHHHHHHHHHHC----CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHH
Confidence 389999999999999 99999986421 2789999999999999999998 899 799999999999999
Q ss_pred HHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-CCeEEEecCCchhhhhcccCCCcccccc
Q 008895 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRA 187 (549)
Q Consensus 109 ~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (549)
++++|||+++|++++|++|.++.+++.+++++++++++|+++......... ....+......+.+....... .....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT--SDILN 170 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC--SCCCC
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc--ccccc
Confidence 999999999999999999999999999999999999999987654433211 122222222222222221111 11122
Q ss_pred ccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC-------CCCCCCcEEEEecChhhHHHHHHHHHHhhhcc
Q 008895 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (549)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~ 260 (549)
...++++++++|||||||.||+|+++|+++.+........+ ......+++++..|+.|..++...+.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 34567899999999999999999999999988776543321 12466789999999999888888888999999
Q ss_pred EEEEecCcC-HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 261 TAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 261 ~~~~~~~~~-~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
++++...+. +..+.+.++++++|+++++|+++..+... ..+++++|.+++||+++++++.+++.+.+ ++.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 325 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV 325 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence 999876543 57788999999999999999998877433 34578999999999999999999999876 8899999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC-
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG- 418 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~- 418 (549)
||+||++..+...... .....+++|+|+++++++|+|++++.+++.|+.|||+|+|++++.|||++|+.+...+. +|
T Consensus 326 YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~ 403 (562)
T 3ite_A 326 YGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-NGR 403 (562)
T ss_dssp ECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-TTE
T ss_pred eccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccC-CCC
Confidence 9999998766543322 23456789999999999999988899999999999999999999999999998887653 55
Q ss_pred -eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcC-CCcceEEEEeecCCCCCceeEEEEEeCCCCCC-
Q 008895 419 -WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH-REVADAAVIPYPDEEAGQMPMAFVVRQPHSSL- 495 (549)
Q Consensus 419 -~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~-~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~- 495 (549)
||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.++ +.+.+++|++.+++..++..++.++...+...
T Consensus 404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~ 483 (562)
T 3ite_A 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR 483 (562)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc
Confidence 999999999999999999999999999999999999999999998 78888888888887777665555554333222
Q ss_pred ------------CHHHHHHHHHhcCCCCCcccEEEEeCccCCC-CCCcccHHHHHcccCcCC
Q 008895 496 ------------NEAEIMEFVARQVSPYKKIRRVAFINAIPKS-AAGKILRMELRKVAVPSG 544 (549)
Q Consensus 496 ------------~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t-~~GKv~r~~l~~~~~~~~ 544 (549)
..++|+++|+++|+.|++|+.|+++++||+| ++||++|++|++++.+..
T Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~ 545 (562)
T 3ite_A 484 GELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLS 545 (562)
T ss_dssp --------------------------------------------------------------
T ss_pred ccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccC
Confidence 1358999999999999999999999999998 899999999999987644
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1e-72 Score=600.22 Aligned_cols=490 Identities=19% Similarity=0.296 Sum_probs=405.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC-CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV-TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
.|+.+++.++++++ |+.+++.+.. .++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 21 ~tl~~~l~~~a~~~----p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 95 (576)
T 3gqw_A 21 PTLVDALDYAALSS----AGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-LNLKKGDRVALIAETSSEFVEAFFACQ 95 (576)
T ss_dssp SSHHHHHHHHTTSS----CEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhCC----CCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 58999999999999 8888775432 24799999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCC-------HHHHHHHHhhcCCeEEEEcCccHHHHhcC---CCeEEEecCCchhhhhcccCCCccccc
Q 008895 117 SLGVIISPANPVNT-------ESEISRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDR 186 (549)
Q Consensus 117 ~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (549)
++|++++|+++.++ .+++.++++.++++++|++.+....+... ......+.. .+.. ... ......
T Consensus 96 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~ 170 (576)
T 3gqw_A 96 YAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH-AWFK---ALP-EADVAL 170 (576)
T ss_dssp HTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEH-HHHH---TSC-CCCCCC
T ss_pred HhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecch-hhhh---ccc-cccccc
Confidence 99999999999998 89999999999999999998876655421 111111110 1111 101 111222
Q ss_pred cccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHH-HHHHhhhccEEEEe
Q 008895 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAVVM 265 (549)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~l~~g~~~~~~ 265 (549)
....++++++++|||||||.||+|+++|+++.+++...........++++++..+|++|.+|+.. ++.++..|+++++.
T Consensus 171 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 171 QRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp CCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 34567899999999999999999999999999888776655335788899999999999999854 66778888888887
Q ss_pred cC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC---CCCCCCCceEEEEecCCCCHHHHHHHHHhCC-----C
Q 008895 266 QR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST---DGYDLSSLETVACGAAPLGKDTIMAFASKFP-----K 333 (549)
Q Consensus 266 ~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~---~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~-----~ 333 (549)
.. +++..+++.++++++|+++++|+++..+.+.... ...+++++|.+++||+++++++.+++.+.++ +
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 64 5889999999999999999999999888765432 3456899999999999999999999999874 7
Q ss_pred CcEEcccCccccccceecccCcCCC--------------------------CCCCccccccCCcEEEEEcCCCCCcCCCC
Q 008895 334 VVLVQAYGLTESTAGVFRTVGPDEC--------------------------RRWGSTGRLSAGLEAKIVDPETGDSLPPG 387 (549)
Q Consensus 334 ~~l~~~yG~tE~~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (549)
..+++.||+||++.++......... ....++|+|+++++++|+| +++++++.|
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g 409 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAER 409 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTT
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCC
Confidence 7899999999999877654221100 0112789999999999999 889999999
Q ss_pred CcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcc
Q 008895 388 KEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467 (549)
Q Consensus 388 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~ 467 (549)
+.|||+|+|++++.||+++++.+...+ .+|||+|||+|++ +||++++.||+||+||++|++|+|.+||++|.+||+|.
T Consensus 410 ~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 487 (576)
T 3gqw_A 410 VVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIH 487 (576)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCC
T ss_pred CeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccc
Confidence 999999999999999999998877654 6899999999999 79999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC-CCCCcccEEEEeC--ccCCCCCCcccHHHHHcccCc
Q 008895 468 DAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQV-SPYKKIRRVAFIN--AIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 468 ~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l-~~~~~p~~i~~v~--~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++|+++.+.. +..+++++.........+++++++++++ +.++.|..+.+++ +||+|++||++|++|++++.+
T Consensus 488 ~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~ 563 (576)
T 3gqw_A 488 SGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQK 563 (576)
T ss_dssp TTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHH
T ss_pred cccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHH
Confidence 98888887653 3445555544433344578899999988 6899999888886 999999999999999998854
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.7e-60 Score=490.32 Aligned_cols=385 Identities=21% Similarity=0.280 Sum_probs=315.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC-----CC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
.|+.++|.++++++ |+++|+++.. ++ +++||+||.++++++|++|++ .|+ +||+|+++++|++++++
T Consensus 24 ~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 24 RSLPAALRACARLQ----PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHH
Confidence 79999999999999 9999998752 22 789999999999999999998 896 99999999999999999
Q ss_pred HHHHHHHcCCeEccCCC---CCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCC--------eEEEecCCchhhhhcccC
Q 008895 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--------RTILIDSPEFDSMTMSWN 179 (549)
Q Consensus 111 ~~la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 179 (549)
++|||+++|++++|+++ .++.+++.+++++++++++|++......+..... .++.++... .. .
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 171 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-----LD-A 171 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----TT-C
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----cc-c
Confidence 99999999999999999 7789999999999999999999988776654321 122221110 00 0
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCC------CcEEEEecChhhHHHH-HHH
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------PAVMLFTMPYFHIYGL-FFC 252 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~------~~~~~~~~pl~~~~g~-~~~ 252 (549)
..........++++++|+|||||||.||+|+++|+++.+++......+. ... .+++++.+|++|.+|+ ..+
T Consensus 172 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 249 (480)
T 3t5a_A 172 -PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF-ADTDGIPPPNSALVSWLPFYHDMGLVIGI 249 (480)
T ss_dssp -C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHC-TTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred -ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhc-cccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence 1111233456789999999999999999999999999888877665552 333 8999999999999997 567
Q ss_pred HHHhhhccEEEEecCc----CHHHHHHHHHHhceeeeeecHHHHHHHHhC----CCCCCCCCCCceEEEEecCCCCHHHH
Q 008895 253 FRAAALMETAVVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKG----GSTDGYDLSSLETVACGAAPLGKDTI 324 (549)
Q Consensus 253 ~~~l~~g~~~~~~~~~----~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~----~~~~~~~l~~lr~v~~~Ge~l~~~~~ 324 (549)
+.++..|+++++.++. ++..+++.++++++| +..+|+++..++.. ......++++||.+++||+++++++.
T Consensus 250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence 8899999999998753 899999999999999 78889988877653 22345678999999999999999999
Q ss_pred HHHHHhC-----CCCcEEcccCccccccceecccCcCC-----------------------CCCCCccccccCCcEEEEE
Q 008895 325 MAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIV 376 (549)
Q Consensus 325 ~~~~~~~-----~~~~l~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i~ 376 (549)
+++.+.+ +++.+++.||+||++..++....... ....+++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 9999998 34689999999999987765432211 123458999999 999999
Q ss_pred cCCCCCcCCCCCcceEEEecCCcccccCCCccccccccC-----------CCCeeecCceEEEecCCeEEEEcc
Q 008895 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL-----------PDGWMRTGDLCYIDEDGFLFIVDR 439 (549)
Q Consensus 377 d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~~~~~GR 439 (549)
|++++++++.|+.|||+|+|++++.||+++|+.|.+.|. .+|||+|||+|+++ ||+++++||
T Consensus 408 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 988899999999999999999999999999999999985 46799999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.5e-54 Score=430.01 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=271.0
Q ss_pred CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCH
Q 008895 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL 270 (549)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~ 270 (549)
.+++++|+|||||||.||+|+++|+++.+++......+ ...++|++++.+|++|.+|+..++.++..|+++++..+.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence 46899999999999999999999999999988887777 578889999999999999998888999999999887642
Q ss_pred HHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccccccee
Q 008895 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (549)
Q Consensus 271 ~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~ 350 (549)
...++.|+++++|+++++|+++..+++.... ..+++++|.+++||+++++++.+++.+. ++++++.||+||++..+.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 1346678899999999999999999987643 3468999999999999999999999875 889999999999988766
Q ss_pred cccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec
Q 008895 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430 (549)
Q Consensus 351 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~ 430 (549)
.... .....+++|.+.||+.+.+.+ .|||+++|+. ..+|||+|||+|++|+
T Consensus 190 ~~~~--~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~----------------~~~g~~~TGDlg~~d~ 240 (358)
T 4gs5_A 190 LKAL--NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAV----------------TNGQTVQTNDLVEIHG 240 (358)
T ss_dssp EEEC--SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGG----------------GTTCCEEEEEEEEECS
T ss_pred cccc--cccccceeeccCCCeEEEecC-----------cCceEEeccc----------------ccCcceecCCcccccc
Confidence 5332 234567889999999988754 4999998863 2478999999999998
Q ss_pred CCeEEEEcccCCeeeeCcEeeChHHHHHHH---HcCCCcceEEEE-eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 008895 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLL---LSHREVADAAVI-PYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506 (549)
Q Consensus 431 ~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l---~~~~~v~~~~vv-~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~ 506 (549)
+| ++++||+||+||++|++|+|.+||++| .+||+|.+++|+ +.+++..++.++++|+... .....++|+++|++
T Consensus 241 ~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~~l~~ 318 (358)
T 4gs5_A 241 NA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTERLTAEIRS 318 (358)
T ss_dssp SE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHHHHHHHHH
T ss_pred Cc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHHHHHHHHh
Confidence 88 667799999999999999999999877 468999998876 5677778888888887543 33456889999999
Q ss_pred cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 507 QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 507 ~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+|+.|++|+.|+++++||+|++|||+|++|++++.+..
T Consensus 319 ~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 319 RVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred hCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 99999999999999999999999999999999887653
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.2e-50 Score=411.58 Aligned_cols=326 Identities=21% Similarity=0.224 Sum_probs=270.4
Q ss_pred CC-CCEEEEEccCCCCCccchhhhcHHHHHHHHHHhh---ccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEE
Q 008895 190 CQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVV 264 (549)
Q Consensus 190 ~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~ 264 (549)
.+ +++++++|||||||.||+|.++|+++.+...... ..+ +..++++++..+|+.|..+. ...+.++..|+++++
T Consensus 83 ~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 83 DMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp CHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 44 7899999999999999999999999977665542 223 46788999999998655554 667888999999999
Q ss_pred ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCC--CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
.+.+++..+++.|+++++|+++++|+++..|++.....+. .++++|.+++|||++++++.+++.+.| ++.+++.||+
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 240 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGM 240 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcc
Confidence 8888999999999999999999999999999876543333 378999999999999999999999999 8999999999
Q ss_pred cccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 008895 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (549)
Q Consensus 343 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (549)
||+++.++.... ......+.+.+++.++|+|++++++++.|+.|||+|+|.. ...+ +++||+|
T Consensus 241 TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~~y~T 303 (436)
T 3qov_A 241 TEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLIRYRT 303 (436)
T ss_dssp GGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCCSEEE
T ss_pred hhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEEEEEc
Confidence 999544222111 1223467778899999999999999999999999999842 2333 6899999
Q ss_pred CceEEEecCC------e---EEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC
Q 008895 423 GDLCYIDEDG------F---LFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS 493 (549)
Q Consensus 423 GD~~~~~~~g------~---~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~ 493 (549)
||+|+++++| + +++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++. +.
T Consensus 304 GDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~ 382 (436)
T 3qov_A 304 RDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL 382 (436)
T ss_dssp EEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT
T ss_pred CCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc
Confidence 9999999998 5 699999999999999999999999999999999999999998877788999999988 54
Q ss_pred CCC----HHHHHHHHHhcCCCC-CcccEEEEeC--ccCCCCCCcccHHHH
Q 008895 494 SLN----EAEIMEFVARQVSPY-KKIRRVAFIN--AIPKSAAGKILRMEL 536 (549)
Q Consensus 494 ~~~----~~~i~~~l~~~l~~~-~~p~~i~~v~--~lP~t~~GKv~r~~l 536 (549)
..+ .+++.++++++|+.+ +.|..+.+++ +||+|+ ||++|...
T Consensus 383 ~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~ 431 (436)
T 3qov_A 383 STDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKD 431 (436)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEEE
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEEe
Confidence 444 678999999999888 8899999998 999999 99998643
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.8e-50 Score=412.89 Aligned_cols=331 Identities=21% Similarity=0.239 Sum_probs=275.0
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc---cCCCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEEEE
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~~~ 264 (549)
..++++++++|||||||.||+|.++|+++......... .+ +..++++++..+|+ +|..++...+.++..|++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 35678899999999999999999999998776544322 33 46788999999998 577777778888999999999
Q ss_pred ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCC--CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
.+.++++.+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++|||++++++++++.+.+ ++.+++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 88889999999999999999999999999988754333333 47999999999999999999999998 8999999999
Q ss_pred cccccc-eecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 008895 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
||+++. .+.... . .....+.+.+++.++|+|++++++++.|+.|||+|+|.. ...| +++||+
T Consensus 247 TE~~g~~~~~~~~-~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t------------~~~~-p~~~y~ 309 (443)
T 2y4o_A 247 SEVMGPGVACECV-E---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT------------KEAM-PVIRYR 309 (443)
T ss_dssp TTTTEEEEEEECT-T---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-CCSSEE
T ss_pred hhhcCCeEEeccC-C---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC------------cccC-hhheee
Confidence 997432 222111 1 111255667899999999888999999999999999832 2334 678999
Q ss_pred cCceEEEecC-CeE-----EEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC--C-
Q 008895 422 TGDLCYIDED-GFL-----FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP--H- 492 (549)
Q Consensus 422 TGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~--~- 492 (549)
|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|.++|+|.+++|+++++...++.++++|+..+ +
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~ 389 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA 389 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc
Confidence 9999999999 986 899999999999999999999999999999999999998877666788899998865 2
Q ss_pred --CCCCHHHHHHHHHhcCCCCC-cccEEEEe--CccCCCCCCcccHHHHHc
Q 008895 493 --SSLNEAEIMEFVARQVSPYK-KIRRVAFI--NAIPKSAAGKILRMELRK 538 (549)
Q Consensus 493 --~~~~~~~i~~~l~~~l~~~~-~p~~i~~v--~~lP~t~~GKv~r~~l~~ 538 (549)
...+.++++++|+++|+.++ .|..|.++ ++||+|++||++|+..++
T Consensus 390 ~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 390 SVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred cchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 12345789999999998764 88888887 599999999999986554
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.7e-49 Score=406.30 Aligned_cols=329 Identities=24% Similarity=0.269 Sum_probs=274.5
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc---cCCCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEEEE
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~~~ 264 (549)
..++++++++|||||||.||+|.++|+++......... .+ +..++|+++..+|+ +|..++...+.++..|++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35678999999999999999999999998776543322 33 46788999999998 678777778889999999998
Q ss_pred ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCC--CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
.+.++++.+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++||+++++++.+++.+.+ ++.+++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 88889999999999999999999999999998754333333 47999999999999999999999988 8999999999
Q ss_pred ccc-ccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 008895 343 TES-TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 343 tE~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
||+ +...+.... . .....+.+.+++.++|+|++++++++.|+.|||+|+|. +...| +++||+
T Consensus 245 TE~~g~~~~~~~~-~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~ 307 (437)
T 2y27_A 245 SEVMGPGVASECV-E---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYR 307 (437)
T ss_dssp TTTTEEEEEECCT-T---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEE
T ss_pred hhhcCCeeEEecC-C---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheee
Confidence 997 432332111 1 11135667789999999988899999999999999983 22334 689999
Q ss_pred cCceEEEec-CCeE-----EEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC-
Q 008895 422 TGDLCYIDE-DGFL-----FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS- 494 (549)
Q Consensus 422 TGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~- 494 (549)
|||+|++++ +|++ ++.||+||+||++|++|+|.+||++|.++|+|.+++|+++++...++.++++|++.++..
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~ 387 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP 387 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc
Confidence 999999998 6985 899999999999999999999999999999999999998877666788999998876543
Q ss_pred --CCHHHHHHHHHhcCCCC-CcccEEEEe--CccCCCCCCcccHHHHH
Q 008895 495 --LNEAEIMEFVARQVSPY-KKIRRVAFI--NAIPKSAAGKILRMELR 537 (549)
Q Consensus 495 --~~~~~i~~~l~~~l~~~-~~p~~i~~v--~~lP~t~~GKv~r~~l~ 537 (549)
.+.++++++|+++|+.+ ..|..|.++ ++||+|+ ||++|+..+
T Consensus 388 ~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~ 434 (437)
T 2y27_A 388 DTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVVDK 434 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEEEC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEEec
Confidence 34578999999999988 588888888 5999999 999997543
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=2.5e-31 Score=265.41 Aligned_cols=239 Identities=18% Similarity=0.134 Sum_probs=183.0
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEEEEe
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVVM 265 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~~~~ 265 (549)
..++++++++|||||||.||+|.++|+++..........+ .+..+++++++.+|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678889999999999999999999999998887543322 246788999999999 99999987787888998 6666
Q ss_pred cCcCHH-----------------------HHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHH
Q 008895 266 QRFDLK-----------------------MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKD 322 (549)
Q Consensus 266 ~~~~~~-----------------------~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~ 322 (549)
..+++. .+++.|+++++|+++++|+++..|++........++++|.+++|||+++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 666777 888899999999999999999999876432223468999999999999999
Q ss_pred HHHHHH-HhCCCCcEEcccCccccccceecccCcCCCCCCCccccc------cCCcEEEEEcCCCCCcCCCCCcceEEEe
Q 008895 323 TIMAFA-SKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL------SAGLEAKIVDPETGDSLPPGKEGELSIR 395 (549)
Q Consensus 323 ~~~~~~-~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (549)
+++++. +.||++++++.||+||++.++..+.. .++|++ .++++++|+|++++++++.|+.|||+|+
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt 319 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT 319 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceecccc-------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEE
Confidence 999999 99989999999999999876543211 147888 9999999999879999999999999998
Q ss_pred cCCcccccCCCccccccccCCCCeeecCceEEEecC--C-------eEEEEcccCCeeeeCcE
Q 008895 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED--G-------FLFIVDRLKDLIKYKGY 449 (549)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~~~~~GR~~d~i~~~G~ 449 (549)
+.. ...+ -.+|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 320 ~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 320 HLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 743 1111 235899999988543 2 35667788888888774
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.60 E-value=7.5e-16 Score=123.75 Aligned_cols=101 Identities=26% Similarity=0.371 Sum_probs=75.2
Q ss_pred cccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCC-Cc
Q 008895 438 DRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPY-KK 513 (549)
Q Consensus 438 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~-~~ 513 (549)
.|.||+|+++|+||+|.+||++|.+||+|.+++++++++...++.+.++|+..++...+. +++.+.+++.+..+ ..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 499999999999999999999999999999999999999888899999999877655443 34445555444322 23
Q ss_pred ccEEEEe--CccCCCCCCcccHH-HHHcc
Q 008895 514 IRRVAFI--NAIPKSAAGKILRM-ELRKV 539 (549)
Q Consensus 514 p~~i~~v--~~lP~t~~GKv~r~-~l~~~ 539 (549)
+..+.++ ++||+| +||++|- .+|+.
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~Rv~D~R~~ 108 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVRVKDLRKT 108 (109)
T ss_dssp CCEEEEECTTCSCCC----CCCEEECSCC
T ss_pred ccceEEEcCCeecCC-CCCcchhhhhccC
Confidence 3356666 589998 7999883 24544
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.58 E-value=1.9e-15 Score=121.06 Aligned_cols=95 Identities=24% Similarity=0.348 Sum_probs=71.8
Q ss_pred cccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC----CHHHHHHHHHhcCC-CCC
Q 008895 438 DRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL----NEAEIMEFVARQVS-PYK 512 (549)
Q Consensus 438 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~----~~~~i~~~l~~~l~-~~~ 512 (549)
||.||+|+++|++|+|.+||++|.+||+|.++++++++++..++.++++++. ++... +.+++.+.+++.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999998888877777889999988 54322 23455555555443 223
Q ss_pred cccEEEEeC--ccCCCCCCcccHH
Q 008895 513 KIRRVAFIN--AIPKSAAGKILRM 534 (549)
Q Consensus 513 ~p~~i~~v~--~lP~t~~GKv~r~ 534 (549)
.+..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 334688886 89999 9999874
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.08 E-value=2.4e-09 Score=109.55 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=87.7
Q ss_pred CCC---ceEEEEecCCCCHHHHHHHHHhCCCCcEE-cccCccccccceecccCcCCCCCCCcccc-ccCC-cEEEEEcCC
Q 008895 306 LSS---LETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAG-LEAKIVDPE 379 (549)
Q Consensus 306 l~~---lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~ 379 (549)
+++ +..++.||- ..-+..++..+++.++. ..|++||+ .+++... ..+ .+...+. .+++ +-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~--p~~-~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLD--PLC-KPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSC--TTS-CGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccC--CCC-CcccCceeecCCcEEEEEEecc
Confidence 567 444455663 44445555655677777 89999995 3333211 111 1111122 2233 344555422
Q ss_pred C--------CCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec----CCeEEEEcccCCeeeeC
Q 008895 380 T--------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRLKDLIKYK 447 (549)
Q Consensus 380 ~--------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~ 447 (549)
+ ...+..|+.+||++++.+ |.| .|++||++++.. ...+.+.||.++++.+.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 2 135668999999998753 322 299999999975 35799999999999999
Q ss_pred cEeeChHHHHHHHHcC
Q 008895 448 GYQVAPAELEHLLLSH 463 (549)
Q Consensus 448 G~~v~~~~IE~~l~~~ 463 (549)
|++++..+||++|.+.
T Consensus 432 Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SCCEEHHHHHHHHHHC
T ss_pred eeECCHHHHHHHHHHH
Confidence 9999999999999753
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=99.05 E-value=6.1e-09 Score=106.74 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCCceE---EEEecCCCCHHHHHHHHHhCCCCcEE-cccCccccccceecccCcCCCCCCCccc-cccCC-cEEEEEcCC
Q 008895 306 LSSLET---VACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTG-RLSAG-LEAKIVDPE 379 (549)
Q Consensus 306 l~~lr~---v~~~Ge~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~i~d~~ 379 (549)
++++|. ++.||- ..-+..++..+++.++. ..|++||+ .+++... ..+ .++..+ ..+|+ .-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~--p~~-~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLN--PMS-KPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSC--TTS-CGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeeecC--CCC-CcccCceeecCCcEEEEEEecc
Confidence 577554 444553 33345555555677777 89999995 3333321 111 111111 12233 334455322
Q ss_pred C---------------CCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec----CCeEEEEccc
Q 008895 380 T---------------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRL 440 (549)
Q Consensus 380 ~---------------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~ 440 (549)
+ ...+..|+.+||+|+... |.|+ |++||++++.. ...+.+.||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEec
Confidence 2 136778999999997653 4433 99999999874 4689999999
Q ss_pred CCeeeeCcEeeChHHHHHHHHc------CCC--cceEEEEe
Q 008895 441 KDLIKYKGYQVAPAELEHLLLS------HRE--VADAAVIP 473 (549)
Q Consensus 441 ~d~i~~~G~~v~~~~IE~~l~~------~~~--v~~~~vv~ 473 (549)
++++++.|+++++.+||++|.+ ..+ |.+..+..
T Consensus 437 ~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred CCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 9999999999999999999873 223 56666653
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.93 E-value=1.4e-08 Score=103.74 Aligned_cols=161 Identities=14% Similarity=0.050 Sum_probs=98.2
Q ss_pred CCCceEE--EEecCCCCHHHHHHHHHhCCCCcEE-cccCccccccceecccCcCCCCCCCcc-ccccCC-cEEEEEcCCC
Q 008895 306 LSSLETV--ACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGST-GRLSAG-LEAKIVDPET 380 (549)
Q Consensus 306 l~~lr~v--~~~Ge~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~-G~~~~~-~~~~i~d~~~ 380 (549)
+++++.| +.+|. + ..-+..++..+++.++. ..|++||+ .+++... ..+ .++.. ...+|+ .-.+.+..++
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~--p~~-~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVT--PRL-SPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCC--TTS-CTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecC--CCC-CccccceeecCCcEEEEEEeccc
Confidence 5777643 34442 2 33335555555677777 99999995 3333321 111 11111 222333 3334443221
Q ss_pred ----------CCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecC----CeEEEEcccCCeeee
Q 008895 381 ----------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED----GFLFIVDRLKDLIKY 446 (549)
Q Consensus 381 ----------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~~~~~GR~~d~i~~ 446 (549)
...+..|+.+||+++..+ |.| .|++||++++..- ..+.+.||.++++.+
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 146778999999998753 322 2999999998642 579999999999999
Q ss_pred CcEeeChHHHHHHHHc------CC--CcceEEEEeecCCCCCceeEEEEEeC
Q 008895 447 KGYQVAPAELEHLLLS------HR--EVADAAVIPYPDEEAGQMPMAFVVRQ 490 (549)
Q Consensus 447 ~G~~v~~~~IE~~l~~------~~--~v~~~~vv~~~~~~~~~~~~~~v~~~ 490 (549)
.|++++..+||.++.+ .. .|.+..++.......+ .-+.|+...
T Consensus 438 ~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~wE~~ 488 (581)
T 4epl_A 438 NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFWEIS 488 (581)
T ss_dssp SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEEEES
T ss_pred eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEEeec
Confidence 9999999999999864 22 3667776653322222 334455654
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.72 E-value=0.89 Score=45.18 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=76.0
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCC--hHHHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~--~~~v~~la~~~~G~~~v~l~ 126 (549)
++.++++. +.+| ..+|.+.+...+..+++.+.. .++.++|++...++.+. ..+..+++++..|+..++++
T Consensus 89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 55666543 2333 358999999888888888877 89999999998887543 33445688899999998876
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+ .+.+.+...+++.++.+++..+.....+
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 196 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSI 196 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHH
Confidence 5 4788999999999999999887766554
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.72 E-value=1.1 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCcEEE---ECCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCC--hHHHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALI---NSVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~---~~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~--~~~v~~la~~~~G~~~v~l~ 126 (549)
++.++++ .+.+| ..+|.+.+...+..+++.+.. .|+.++|++...++-+. ..+...++++..|+..++++
T Consensus 91 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 91 REQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp GGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred hhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 5555544 23344 358999999888888888877 89999999998887643 33455688889999998877
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+. +.+.+...+++.++.++...+.....+
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l 198 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPSYMLNL 198 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHHHHHHH
Confidence 54 788999999999999999887765544
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=88.90 E-value=1.6 Score=43.23 Aligned_cols=98 Identities=19% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCC--ChHHHHHHHHHHcCCeEccCCC
Q 008895 57 DTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANP 127 (549)
Q Consensus 57 ~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~--~~~~v~~la~~~~G~~~v~l~~ 127 (549)
+.+|++.. .+| ..+|.+.+...+..+++.+.. .++.++|++....+-+ ...+..+++++..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 66676543 233 358999999989888888887 8999999999888754 3344567888999999988765
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
. +++.+...+++.++.+++..+.....+
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~~~~~l 192 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPSYAIRL 192 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHHHHHHH
Confidence 4 778899999999999999877766554
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=79.24 E-value=5.5 Score=38.27 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=67.2
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCCh--HHHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~--~~v~~la~~~~G~~~v~l~ 126 (549)
++.++++. +.+| ..+|.+.+...+..+++.+.. .|+.++|++..+++-+.. -+...++++..|+.+++.+
T Consensus 90 ~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~ 168 (369)
T 3hgu_A 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID 168 (369)
T ss_dssp TTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC
T ss_pred ccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc
Confidence 55555543 3333 357999998888877777777 899999999998876332 2344455588898655543
Q ss_pred CCCCHH-----------------------HHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 PVNTES-----------------------EISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
.++. .+...+++.++.+++..+.....+.
T Consensus 169 --~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 169 --IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp --CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred --CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 3444 6666888899998888777666553
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=77.33 E-value=9 Score=39.14 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=72.4
Q ss_pred CCCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHH--HHHHHHHHcCCeEccCC
Q 008895 56 DDTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~~~---~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~--v~~la~~~~G~~~v~l~ 126 (549)
++.+|++... +| -.+|.+.+...+......+.. .++.++|++...++-...+- ..+++.+ .|+..+.++
T Consensus 191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 3778877542 22 468999988777666554443 57889999988887665443 3356777 999888775
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
..+++.+...+++.++.+++..+.....+.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 578899999999999999998887766553
No 47
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=75.20 E-value=21 Score=35.69 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=71.5
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~ 127 (549)
|+.+|++.. .+| -.+|.+.+...+..+.. . .++.++|++...++-...+ +..+++++..|+..+..+
T Consensus 162 ~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---S-LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp TTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---H-TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---h-hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 778887643 233 36899888776655443 3 6789999999888765433 334677888999888776
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
..+++.+...+++.++.++...+.....+.
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 478999999999999999998877666553
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=71.89 E-value=30 Score=35.10 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH---HHHHHHHcCCeEccC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v---~~la~~~~G~~~v~l 125 (549)
++.+|++.. .+| ..+|.+.+...+...+. . .++.++|++...++....+-. .+++++..|+..+..
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---I-CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---H-hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 677887643 222 46899988877665543 2 578999999998876655433 378888999988876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+ ..++..+...+++.++.++...+.....+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMW 295 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence 5 46788888999999999998877665544
No 49
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=68.73 E-value=28 Score=35.25 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=70.6
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH---HHHHHHHcCCeEccC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v---~~la~~~~G~~~v~l 125 (549)
|+.+|++.. .+| ..+|.+.+...+..... . .++.++|++...++-+..+-. .+++++..|+..+..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---V-CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---h-hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 677777643 233 46899888776655433 3 578899999888876654433 478889999998876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+ ..+++.+...+++.++.++...+.....+
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 286 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVW 286 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 5 46888999999999999999877665544
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=67.52 E-value=37 Score=34.17 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=68.1
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHH--HHHHHHcCCeEccCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL--YFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~--~la~~~~G~~~v~l~ 126 (549)
|+.+|++.. .+| -.+|.+.+...+..++.. .++.++|++...++-....-.. +++++ .|+..+.++
T Consensus 169 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~ 243 (517)
T 3r44_A 169 GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST----IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243 (517)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH----SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS
T ss_pred CCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh----cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC
Confidence 677776542 233 468998887776655433 5789999999888776554333 45555 888888764
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
..++..+...+.+.++.++...+.....+.
T Consensus 244 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 273 (517)
T 3r44_A 244 -QFDATKVWSLIVEERVCIGGAVPAILNFMR 273 (517)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 578999999999999999998877666543
No 51
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=66.36 E-value=21 Score=36.30 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=71.4
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~ 127 (549)
++.+|++.. .+| ..+|.+.+...+......+.. .++.+++++...++-...+ +...++.+..|+..+.++
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG-NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcc-ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 456776643 222 468998887776665554444 5788999998888766433 345667788899888775
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
..+++.+...+++.++.++...+.....+.
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFA 296 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHH
Confidence 578899999999999999998877666553
No 52
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=61.70 E-value=26 Score=35.26 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=70.6
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~ 127 (549)
++.+|++. +.+| ..+|.+.+...+..++. . .++.++|++....+-+..+ +..+++++..|+..+.++.
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---D-FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---H-STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---h-cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 66777653 2333 36898888776655443 3 6778999999988876544 3457888999999887765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 V--NTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
. .++..+...+++.++.++...+.....+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 5678889999999999998887766554
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=61.22 E-value=29 Score=35.62 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=69.9
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH--HHHHHHHcCCeEccCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v--~~la~~~~G~~~v~l~ 126 (549)
|+.+|++.. .+| ..+|.+.+...+...+. . .++.++|++...++-...+-. .+++.+..|+..+.++
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---S-FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---h-hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 677887643 233 46899988877666544 3 678999999998887765543 3788899999988876
Q ss_pred CCC---CHHHHHHHHhhcCCeEEEEcCccHHH
Q 008895 127 PVN---TESEISRQIQLSNPVIAFATSSVVHK 155 (549)
Q Consensus 127 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~ 155 (549)
+.. ++..+...+++.++.++.........
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 273 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDY 273 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHH
Confidence 542 56778888999999888776655443
No 54
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=60.63 E-value=21 Score=35.83 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=69.8
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~ 127 (549)
++.+|++.. .+| ..+|.+.+...+..... . .++.++|++....+-+..+ +..+++++..|+..+.+++
T Consensus 143 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 143 GDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---D-FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp TTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---H-TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---h-cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 667776542 233 35898888766554433 3 6789999999988876443 4557888999999888875
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 V--NTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
. .++..+...+++.++.++...+.....+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 5788899999999999988877666544
No 55
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=58.13 E-value=33 Score=34.81 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=69.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH-HHHHHHHcCCeEccCCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI-LYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v-~~la~~~~G~~~v~l~~ 127 (549)
++.+|++. +.+| ..+|.+.+...+... .+....++.++|++...++-....-. .+++++..|+..+..++
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA--SLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHT--TSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhh--hhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 56777653 3333 358888876543321 12222578899999888876543332 45778888999888877
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
..+++.+...+++.++.++...+.....+
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 281 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLAL 281 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHH
Confidence 77899999999999999999887766544
No 56
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=57.60 E-value=46 Score=33.99 Aligned_cols=98 Identities=14% Similarity=0.027 Sum_probs=68.7
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH--HHHHHHHcCCeEccCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v--~~la~~~~G~~~v~l~ 126 (549)
|+.+|++.. .+| -.+|.+ +...... ..... .++.++|++....+-+..+-. .+++.+..|+..+..+
T Consensus 205 ~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~-~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 205 SQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAK--MDAGW-TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHH--HHTTT-TSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCcEEEEECCCCCCCCCEEEechH-HHHhhhh--hhhhh-cCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 677777643 233 358888 4432111 12233 788999999888877655433 4678888998888776
Q ss_pred C-CCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 P-VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
. ..++..+...+++.++.+++..+.....+.
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 4 678999999999999999998887766554
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=55.92 E-value=71 Score=32.89 Aligned_cols=96 Identities=9% Similarity=0.073 Sum_probs=69.3
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH---HHHHHHHcCCeEccC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v---~~la~~~~G~~~v~l 125 (549)
|+.+|++.. .+| ..+|.+.+...+..... . .++.+++++....+-...+-. .+++++..|+..+..
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~---~-~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE---I-CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH---h-cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 677887643 233 46899888766655443 3 577899999998886554433 478888899888876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+. .+...+...+++.++.++.........+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 54 5788888899999999998877665543
No 58
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=55.02 E-value=46 Score=33.23 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=68.3
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCC--CCCCEEEEEcCCCChHH--HHHHHHHHcCCeEcc
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRL--SKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISP 124 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~--~~g~~V~i~~~~~~~~~--v~~la~~~~G~~~v~ 124 (549)
|+.+|++.. .+| ..+|.+.+...+..++. . .++ .+++++...++-...+- ..+++.+..|+..+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---Q-VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---T-TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---h-hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 677877643 222 35888888766555432 2 566 78888888887665443 347888899999887
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 125 ANPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 125 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
.+. .++..+...+++.++.++...+.....+
T Consensus 228 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 258 (504)
T 1t5h_X 228 VEE-FRPVDALQLVQQEQVTSLFATPTHLDAL 258 (504)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCeEEEeChHHHHHH
Confidence 764 6788899999999999998877666554
No 59
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=54.32 E-value=22 Score=36.03 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=72.1
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH--HHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~--~v~~la~~~~G~~~v~l~ 126 (549)
|+.+|++. +.+| ..+|.+.+...+...........++.++|++...++-...+ ...+++.+..|+..+.++
T Consensus 177 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 256 (536)
T 3ni2_A 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP 256 (536)
T ss_dssp TTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS
T ss_pred ccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC
Confidence 67777653 3333 46899988776655544333225788999998888765433 344678888999888775
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
..+.+.+...+++.++.++.........+.
T Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (536)
T 3ni2_A 257 -KFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286 (536)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEccHHHHHHHH
Confidence 577889999999999999988776665543
No 60
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=51.88 E-value=58 Score=32.74 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCCcEEEEC---CCC----ceecHHHH-HHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH--HHHHHHHcCCeEccC
Q 008895 56 DDTVALINS---VTG----LRVSFSEF-TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPA 125 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el-~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v--~~la~~~~G~~~v~l 125 (549)
|+.+|++.. .+| -.+|.+.+ ..... ......++.++|++....+-...+-. .++..+..|+..+.+
T Consensus 182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~----~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAEL----YAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHH----TCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHH----HhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 677877643 222 35888877 33221 22222578899999888877665533 456788899999888
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
++..+++.+...+.+.++.+++..+.....+
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANM 288 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHH
Confidence 7778899999999999999999877665544
No 61
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=47.46 E-value=58 Score=22.99 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=33.8
Q ss_pred hHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 008895 453 PAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYK 512 (549)
Q Consensus 453 ~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~ 512 (549)
..++++.|.++|.|.+|..+. ++.-..+.+.. .+.+++.+.+.+.+....
T Consensus 15 ~~~~~~~l~~~peV~e~~~vt-----G~~D~ll~v~~-----~d~~~l~~~i~~~l~~~~ 64 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVY-----GEYDLIVKVET-----DTLKDLDQFITEKIRKMP 64 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECB-----SSCSEEEEEEE-----SSHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHhCCCCeeEEEEEc-----ccCCEEEEEEE-----CCHHHHHHHHHHHhccCC
Confidence 478999999999999998872 12223334433 367788888876665443
No 62
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=47.00 E-value=1.4e+02 Score=29.74 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=64.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH--HHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v--~~la~~~~G~~~v~l~ 126 (549)
++.+|++. +.+| ..+|.+.+...+..+.. . .++.++|++...++-...+-. .+++++..|+.+++.
T Consensus 159 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~- 233 (509)
T 3ivr_A 159 AADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD---A-WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA- 233 (509)
T ss_dssp TTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred ccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH---h-hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-
Confidence 66676653 3444 36899888776665543 3 678999999988876654332 233344455554443
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
..+++.+...+++.++.++.........+.
T Consensus 234 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 263 (509)
T 3ivr_A 234 -KFDPAQAARDIEAHKVTVMAEFAPMLGNIL 263 (509)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEEETTHHHHHH
T ss_pred -ccCHHHHHHHHHHHCCcEEEecHHHHHHHH
Confidence 678999999999999999988777665543
No 63
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=46.85 E-value=58 Score=33.19 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=69.6
Q ss_pred CCCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCC-hHHHHHHHHHHcCCeEccCCC
Q 008895 56 DDTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI-EIPILYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~~~---~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~-~~~v~~la~~~~G~~~v~l~~ 127 (549)
|+.+|++... +| ..+|.+.+..... .... .++.++|++....+-+. -....+++.+..|+.++..+.
T Consensus 213 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDY-AGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp TTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCS-SCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhh-cCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 7788877532 22 4688887754322 1233 58899999998888764 345567888899998887764
Q ss_pred -CCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 -VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 -~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
..++..+...+++.++.++.........+
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 317 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFL 317 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 56888999999999999998877766554
No 64
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=45.93 E-value=91 Score=31.14 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCC
Q 008895 56 DDTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~~~---~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~ 127 (549)
++.+|++... +| ..+|.+.+...+..+.... . .++.+++++....+-+... +..+++++..|+..+.++.
T Consensus 144 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 144 GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-A-FDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp TTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-T-TCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-c-cCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 6777776432 22 4689998887665544332 2 4678888888877766544 4556778889998887765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 V--NTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
. .+...+...+.+.++.++...+.....+
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 4 4788889999999999988877665543
No 65
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=44.42 E-value=64 Score=33.37 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=69.5
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCC-
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPAN- 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~- 126 (549)
|+.+|++. +.+| ..+|.+.+...+. .... .++.+++++....+-+.+. +..+++.+..|+.++..+
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSF-LAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGG-GTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHh-hCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 67777753 3344 3688887754332 2233 6889999999988877654 344688888998887764
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
...+++.+...+++.++.++.........+
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l 267 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTL 267 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHH
Confidence 356899999999999999999887766554
No 66
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=43.64 E-value=1.3e+02 Score=30.04 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=66.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH--HHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~--~v~~la~~~~G~~~v~l~ 126 (549)
|+.+|++. +.+| ..+|.+.+...+..++.. +++.++|++...++..... +..+++.+..|+..+..+
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHH----HTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHH----hCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 66777653 2333 468999888777665543 4678899988877754332 335788899999988774
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
..+.+.+...+ +.++.+++..+.....+
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l 257 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRI 257 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHH
Confidence 56777777777 67888888777665544
No 67
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=43.19 E-value=38 Score=33.49 Aligned_cols=90 Identities=13% Similarity=0.015 Sum_probs=63.3
Q ss_pred CCCcEEEECC---C----CceecHHHHHHHHHHHHHHhHHhcCCCC------CCEEEEEcCCCChH--HHHHHHHHHcCC
Q 008895 56 DDTVALINSV---T----GLRVSFSEFTRRTNSLASYLQNVTRLSK------NDTAFVLSTNSIEI--PILYFSLLSLGV 120 (549)
Q Consensus 56 p~~~a~~~~~---~----~~~~Ty~el~~~a~~~A~~L~~~~g~~~------g~~V~i~~~~~~~~--~v~~la~~~~G~ 120 (549)
++.+|++... + +..+|.+.+...+..+...+ ++.+ ++++...++-...+ ...+++.+..|+
T Consensus 182 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 257 (480)
T 3t5a_A 182 YPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY----FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY 257 (480)
T ss_dssp CCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH----CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred CCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh----ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence 6778876532 2 35799999988777666544 3344 88888887766543 556789999999
Q ss_pred eEccCCCC---CCHHHHHHHHhhcCCeEEEEcC
Q 008895 121 IISPANPV---NTESEISRQIQLSNPVIAFATS 150 (549)
Q Consensus 121 ~~v~l~~~---~~~~~l~~~l~~~~~~~ii~~~ 150 (549)
..+..++. .++..+...+++.++. +....
T Consensus 258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p 289 (480)
T 3t5a_A 258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAP 289 (480)
T ss_dssp CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEEC
T ss_pred ceEEECHHHHHHCHHHHHHHHHhhcee-EeeCh
Confidence 98887754 3677888888888888 44433
No 68
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=42.89 E-value=51 Score=33.39 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCCC
Q 008895 57 DTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANPV 128 (549)
Q Consensus 57 ~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~~ 128 (549)
+.+|++. +.+| ..+|.+.+...+..++.. .++.++|++...++-...+ +..++.++..|+..+.++ .
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~ 254 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVA----TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-M 254 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHH----HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-S
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHH----cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-C
Confidence 6677653 3334 468999888777665542 5789999998888765543 233667788898888775 6
Q ss_pred CCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 129 NTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 129 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
.+++.+...+++.++.++...+.....+
T Consensus 255 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l 282 (549)
T 3g7s_A 255 FNQEMLAENIEKYKGTFSWAVPPALNVL 282 (549)
T ss_dssp CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHhCCeEEEeCCHHHHHH
Confidence 7889999999999999999887766554
No 69
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=42.32 E-value=61 Score=35.67 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=71.7
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH--HHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~--~v~~la~~~~G~~~v~l~ 126 (549)
|+.+|++.. .+| ..+|.+.+...+..........+++.++|++....+-...+ ...+++.+..|+..+..+
T Consensus 224 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 303 (979)
T 3tsy_A 224 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP 303 (979)
T ss_dssp TTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS
T ss_pred ccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC
Confidence 778887643 223 46899988776655544333235788999998888765433 345678888999888765
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
..+.+.+...+++.++.++...+.....+
T Consensus 304 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 332 (979)
T 3tsy_A 304 -KFEINLLLELIQRCKVTVAPMVPPIVLAI 332 (979)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEcHHHHHHHH
Confidence 56788999999999999998877665544
No 70
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=41.94 E-value=65 Score=32.76 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCC
Q 008895 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~ 127 (549)
|+.+|++.. .+| -.+|.+.+...+..+ ....++.++|++....+-.... +..++..+..|+..+.++.
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFF----ENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp TTSEEEEEEEC-----CEEEEEESHHHHHHHHHH----HHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHH----HHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 667776532 233 358888876554433 3336889999999888766543 3356778888998887764
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEcCccH
Q 008895 128 V--NTESEISRQIQLSNPVIAFATSSVV 153 (549)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~ 153 (549)
. .+...+...+++.++.++...+...
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~ 284 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYV 284 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHH
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHH
Confidence 3 5778888999999998888766543
No 71
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=39.37 E-value=78 Score=29.67 Aligned_cols=91 Identities=11% Similarity=-0.023 Sum_probs=56.1
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHhHHhcC-CCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHH
Q 008895 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR 136 (549)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g-~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~ 136 (549)
++.+-.+..+.+=+|++--. ...+. ...+ .| +++|+.|.+....+..-..+.++|...|..++.+=|...+..-..
T Consensus 36 ~i~~K~E~~~ptGSfK~R~a-~~~i~-~a~~-~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 112 (334)
T 3tbh_A 36 KVVLKMECENPMASVKDRLG-FAIYD-KAEK-EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRC 112 (334)
T ss_dssp EEEEEEGGGSTTSBTHHHHH-HHHHH-HHHH-TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEeCCCCCccCcHHHHH-HHHHH-HHHH-cCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 45554442223335554321 12233 3334 35 488888655556677778888888888987776555444445566
Q ss_pred HHhhcCCeEEEEcCc
Q 008895 137 QIQLSNPVIAFATSS 151 (549)
Q Consensus 137 ~l~~~~~~~ii~~~~ 151 (549)
.++..++.+++++..
T Consensus 113 ~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 113 LLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 788999999998754
No 72
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=36.55 E-value=70 Score=30.24 Aligned_cols=93 Identities=9% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCcEEE---ECCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEccCCCC
Q 008895 57 DTVALI---NSVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANPV 128 (549)
Q Consensus 57 ~~~a~~---~~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v~l~~~ 128 (549)
|.+|++ .+.+| ..+|.+.+...+..++. .+++.++|++...+|-...+ +..++..+..|+..+..++.
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 445554 44455 36999988776655443 36789999999888766433 34455667778777776654
Q ss_pred CCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 129 NTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 129 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
... ...+++.++.++...+.....+
T Consensus 113 ~~~---~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 113 ANP---LAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp SCT---TTTCSSCCCSEEEECHHHHHHH
T ss_pred ccH---HHHHHHhCCeEEEcChHHHHHh
Confidence 332 3456667777777665544443
No 73
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=36.51 E-value=94 Score=21.63 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=32.8
Q ss_pred hHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 008895 453 PAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPY 511 (549)
Q Consensus 453 ~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~ 511 (549)
..++++.|.++|+|.+|..+. ++.-..+.+.. .+.+++.+.+.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~d~l~~v~~-----~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVY-----GVYDIVVKVEA-----DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECS-----SSCSEEEEEEC-----SSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEe-----ccCCEEEEEEE-----CCHHHHHHHHHHHhcCC
Confidence 368899999999999998872 22223334332 36778888777666544
No 74
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=36.39 E-value=77 Score=32.14 Aligned_cols=98 Identities=6% Similarity=0.030 Sum_probs=69.0
Q ss_pred CCCcEEEECCC---C----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH--HHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALINSVT---G----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~~~~---~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~--~v~~la~~~~G~~~v~l~ 126 (549)
|+.+|++.... | -.+|.+.+...+..+... ..++.++|++...++-...+ ...+++.+..|+..+.+.
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD---GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT---TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc---ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 67888875422 2 468999887766554322 25789999999888776553 345677888888887765
Q ss_pred C---CCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 P---VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+ ..++..+...+++.++.+++..+.....+
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 4 23566788899999999988877655443
No 75
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=33.66 E-value=1.1e+02 Score=28.89 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=60.2
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHH
Q 008895 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137 (549)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~ 137 (549)
++.+-.+....+=+|++-- ..+.+.....+ .-+++|.+..+....+-.-..+-++|.++|..+..+=|...+..-...
T Consensus 51 ~IylK~E~lnptGSfK~Rg-A~~~i~~a~~~-g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~ 128 (344)
T 3vc3_A 51 YVAVKQEMMQPTASIADRP-AYAMITDAEEK-NLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT 128 (344)
T ss_dssp EEEEEEGGGSTTSBTTHHH-HHHHHHHHHHT-TCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEecCCCCCCCcHHHH-HHHHHHHHHHc-CCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHH
Confidence 4555554333344555422 22334444443 346788766667777888888889999999887776665555556677
Q ss_pred HhhcCCeEEEEcCc
Q 008895 138 IQLSNPVIAFATSS 151 (549)
Q Consensus 138 l~~~~~~~ii~~~~ 151 (549)
++..++.+++++..
T Consensus 129 ~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 129 MRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHcCCEEEEECCC
Confidence 89999999998653
No 76
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=32.38 E-value=90 Score=32.42 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHH--HHHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~--v~~la~~~~G~~~v~l~ 126 (549)
++.+|++. +.+| ..+|.+.+...+.. .+....++.++|++....+-+...- ..+++.+..|+..+..+
T Consensus 255 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT---TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEESHHHHHHHHH---HHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred CCCCEEEEeccCCCCCCceEEECchHHHHHHHH---HHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 56677653 3333 35787776544322 2222267899999988877665543 34678999999998876
Q ss_pred CC---CCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 PV---NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
.. .++..+...+++.++.++.+.+.....+.
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 365 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence 42 46788999999999999998887766553
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.79 E-value=2.5e+02 Score=24.18 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=53.8
Q ss_pred cEEEEecCh-hhHHHH-HHHHHHhhhccEEEEec-CcCHHHHHHHHHHhceeeeee------cHHH--HHHHHhCCCCCC
Q 008895 235 AVMLFTMPY-FHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAV------TPPI--VVAMSKGGSTDG 303 (549)
Q Consensus 235 ~~~~~~~pl-~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~------~P~~--l~~l~~~~~~~~ 303 (549)
.+++...+- .|..|. ......-..|-.++... ...++.+.+.+.+++++.+.. +++. +..+.+..+..+
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~ 173 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK 173 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC
Confidence 344444332 467777 44455556777887775 467899999999999997776 2222 222222222111
Q ss_pred CCCCCceEEEEecCCCCHHHHHH
Q 008895 304 YDLSSLETVACGAAPLGKDTIMA 326 (549)
Q Consensus 304 ~~l~~lr~v~~~Ge~l~~~~~~~ 326 (549)
.. ..+ .+++||.+++++..+.
T Consensus 174 ~~-~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 174 LR-DSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp CG-GGS-EEEEESSSCCHHHHHH
T ss_pred CC-CCC-EEEEECCCCCHHHHHH
Confidence 10 123 3788999999876544
No 78
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=30.51 E-value=1.2e+02 Score=30.60 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHH----hcCCCCCCEEEEEcCCCChH-HHHHHHHHHcCCeEc
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQN----VTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIIS 123 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~----~~g~~~g~~V~i~~~~~~~~-~v~~la~~~~G~~~v 123 (549)
++.+|++. +.+| ..+|.+.+...+..++..+.. ...+..++++....+..... +..++..+..|+..+
T Consensus 174 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 253 (562)
T 3ite_A 174 ENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAV 253 (562)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEE
Confidence 45556553 2333 358999998888887776642 13567788888777766554 344677888898887
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcCccHH
Q 008895 124 PANPVNTESEISRQIQLSNPVIAFATSSVVH 154 (549)
Q Consensus 124 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 154 (549)
........+.+...+++.++.++...+....
T Consensus 254 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~ 284 (562)
T 3ite_A 254 TGERLSMLDDLPRTFRELGVTHAGIVPSLLD 284 (562)
T ss_dssp ECCHHHHHHSHHHHHHHTTCCEEEECHHHHH
T ss_pred ecchhhCHHHHHHHHHHcCCCEEEcCHHHHh
Confidence 7654444566778888899988887765544
No 79
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=29.00 E-value=96 Score=22.30 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=32.9
Q ss_pred hHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 008895 453 PAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYK 512 (549)
Q Consensus 453 ~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~ 512 (549)
..++++.|.++|+|.+|..+. +..-..+.+..+ +.+++.+.+.+++....
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~D~ll~v~~~-----d~~~l~~~l~~~l~~~~ 64 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVT-----GPYDLVALVRLK-----DVEELDDVVTQGILSLE 64 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEES-----SSSSEEEEEEES-----SGGGHHHHCCCCCTTST
T ss_pred HHHHHHHHhcCCCeEEEEEee-----cCCCEEEEEEEC-----CHHHHHHHHHHhcccCC
Confidence 578889999999999999882 222234444433 45577777766665443
No 80
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=26.19 E-value=1.5e+02 Score=30.24 Aligned_cols=98 Identities=5% Similarity=0.042 Sum_probs=66.9
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH--HHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v--~~la~~~~G~~~v~l~ 126 (549)
++.+|++. +.+| ..+|...+...+.. .....++.+++++....+.+...-+ .+++.+..|+..+..+
T Consensus 224 ~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 299 (580)
T 3etc_A 224 NEDICLVYFSSGTAGFPKMVEHDNTYPLGHILT----AKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD 299 (580)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEETTHHHHHHHH----HHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCCccEEEeccHHHHHHHHH----HHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEec
Confidence 67777653 2333 24555544332221 1222578899998888777655433 4688899999988775
Q ss_pred -CCCCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 -PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 -~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
...+++.+...+++.++.++...+.....+.
T Consensus 300 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 331 (580)
T 3etc_A 300 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331 (580)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCeEEEccHHHHHHHH
Confidence 5678999999999999999988877666553
No 81
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=25.70 E-value=1.5e+02 Score=30.89 Aligned_cols=99 Identities=10% Similarity=0.043 Sum_probs=67.1
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHH--HHHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~--v~~la~~~~G~~~v~l~ 126 (549)
++.+|++. +.+| ..+|.+.+...+.. .+....++.++|++....+-+...- ..+++.+..|+..+..+
T Consensus 261 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~ 337 (663)
T 1ry2_A 261 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL---TMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFE 337 (663)
T ss_dssp TTSCCEEEEECCSSSSCEEEEECSHHHHHHHHH---HHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEEC
T ss_pred CCCceEEEeccCCCCCCceEEEchhHHHHHHHH---HHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEEC
Confidence 45566543 3344 34777766543322 2222368899999888777665432 34578899999888876
Q ss_pred CC---CCHHHHHHHHhhcCCeEEEEcCccHHHHh
Q 008895 127 PV---NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (549)
Q Consensus 127 ~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (549)
.. .+++.+...+++.++.++.+.+..+..+.
T Consensus 338 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 371 (663)
T 1ry2_A 338 GTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLK 371 (663)
T ss_dssp SCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 42 46788999999999999998887766554
No 82
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=23.40 E-value=2.4e+02 Score=27.82 Aligned_cols=79 Identities=6% Similarity=-0.037 Sum_probs=57.0
Q ss_pred hhcHHHHHHHHHHhhccC--CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC-cCHHHHHHHHHHhceeeeee
Q 008895 211 MLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAV 287 (549)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~~l~~~~~t~l~~ 287 (549)
.+|.+.+..........+ .+..++|++...++-.. ......++++..|+..+.+.+ ...+++...+++.++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 467777765544433322 25778888888777653 234667888899999999875 67788999999999999887
Q ss_pred cHH
Q 008895 288 TPP 290 (549)
Q Consensus 288 ~P~ 290 (549)
.+.
T Consensus 107 ~~~ 109 (503)
T 4fuq_A 107 DPS 109 (503)
T ss_dssp CGG
T ss_pred Cch
Confidence 654
No 83
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=21.88 E-value=1.7e+02 Score=33.38 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=69.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH-HHHHHHHcCCeEccCCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI-LYFSLLSLGVIISPANP 127 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v-~~la~~~~G~~~v~l~~ 127 (549)
|+.+|++- +.+| ..+|.+.+... ...... .++.++|++..+.+-+.+..+ .+++.+..|+..+..++
T Consensus 606 ~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~-~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 606 PNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDY-MAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCS-SCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHh-cCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 77788763 3333 35888877532 222233 688999999988887766543 47888889998888775
Q ss_pred --CCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 --VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 --~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
..++..+...+.+.++.++...+.....+
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l 711 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLL 711 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHH
Confidence 36788999999999999998877655544
No 84
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=21.21 E-value=2.2e+02 Score=26.95 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=39.2
Q ss_pred HhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCC-----CCCHHHHHHHHhhcC--CeEEEE
Q 008895 85 YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP-----VNTESEISRQIQLSN--PVIAFA 148 (549)
Q Consensus 85 ~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~ii~ 148 (549)
.|.. +++++||.|.+..+....+ .-++...|+.++.++. ..+.+.+...+...+ .++|+.
T Consensus 69 al~~-l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQL-KKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHH-HSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHH-cCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3455 5789999998776544433 3456678987766553 247888888774334 666664
No 85
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=20.82 E-value=2.1e+02 Score=20.06 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=30.9
Q ss_pred CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEc
Q 008895 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS 102 (549)
Q Consensus 67 ~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~ 102 (549)
.+.+|-.|+...+.+--+.|.++.|+...-.|+-++
T Consensus 61 drkmtraefsaiasrsirelkerfgfdkdvpigavl 96 (115)
T 4hlb_A 61 DRKMTRAEFSAIASRSIRELKERFGFDKDVPIGAVL 96 (115)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCcCCccceeE
Confidence 789999999999999999999989998887666543
No 86
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=20.20 E-value=2.3e+02 Score=26.45 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=46.6
Q ss_pred eecHHHHHHH--HHHHH-HHhHHhcCCCCCCEEEEEcCC-CChHHHHHHHHHHcCCe-EccCCCCCCHHHHHHHHhhcCC
Q 008895 69 RVSFSEFTRR--TNSLA-SYLQNVTRLSKNDTAFVLSTN-SIEIPILYFSLLSLGVI-ISPANPVNTESEISRQIQLSNP 143 (549)
Q Consensus 69 ~~Ty~el~~~--a~~~A-~~L~~~~g~~~g~~V~i~~~~-~~~~~v~~la~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~ 143 (549)
.+++.+...- .-..| ..|.+..++++|++|+|.... +.-.+++.+|- ..|+. ++..+.....++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 4677665432 11222 234442489999999999874 45566666654 45774 3444444444445556677888
Q ss_pred eEEEE
Q 008895 144 VIAFA 148 (549)
Q Consensus 144 ~~ii~ 148 (549)
..++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 77764
Done!