Query 008896
Match_columns 549
No_of_seqs 331 out of 2456
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 17:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.9E-54 4.1E-59 467.2 35.9 469 49-532 15-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 3E-33 6.6E-38 288.6 27.1 393 63-528 15-493 (498)
3 PRK10207 dipeptide/tripeptide 100.0 3.2E-30 6.9E-35 278.2 40.4 393 65-532 10-486 (489)
4 TIGR00924 yjdL_sub1_fam amino 100.0 5.1E-30 1.1E-34 276.2 39.8 386 65-526 6-472 (475)
5 TIGR00926 2A1704 Peptide:H+ sy 100.0 8.3E-29 1.8E-33 272.7 38.2 294 83-436 1-335 (654)
6 PRK09584 tppB putative tripept 100.0 2.7E-28 5.8E-33 264.4 41.3 399 65-531 17-488 (500)
7 PRK15462 dipeptide/tripeptide 100.0 6.4E-28 1.4E-32 257.4 41.0 394 66-530 6-487 (493)
8 TIGR01299 synapt_SV2 synaptic 99.9 7.3E-23 1.6E-27 228.3 28.5 176 67-278 165-353 (742)
9 TIGR00887 2A0109 phosphate:H+ 99.9 1.2E-21 2.5E-26 213.1 29.9 180 66-275 13-220 (502)
10 PRK03545 putative arabinose tr 99.9 1.8E-20 3.9E-25 197.0 36.0 177 66-278 6-182 (390)
11 PRK10077 xylE D-xylose transpo 99.9 1.5E-21 3.3E-26 210.5 25.7 186 68-277 11-212 (479)
12 PRK11551 putative 3-hydroxyphe 99.9 2E-20 4.3E-25 197.4 32.7 177 64-276 10-186 (406)
13 PRK11663 regulatory protein Uh 99.9 1.6E-20 3.5E-25 200.5 31.9 169 69-273 23-191 (434)
14 COG2814 AraJ Arabinose efflux 99.9 6.8E-20 1.5E-24 187.9 34.9 183 63-281 7-189 (394)
15 PRK05122 major facilitator sup 99.9 8.1E-20 1.8E-24 192.5 34.2 177 67-270 13-189 (399)
16 TIGR00903 2A0129 major facilit 99.9 7.2E-20 1.6E-24 191.0 31.3 155 88-278 9-163 (368)
17 PRK12382 putative transporter; 99.9 1E-19 2.3E-24 191.3 32.5 172 70-268 16-187 (392)
18 TIGR02332 HpaX 4-hydroxyphenyl 99.9 9.7E-20 2.1E-24 193.1 31.5 178 66-279 5-188 (412)
19 PRK10489 enterobactin exporter 99.9 1.7E-19 3.6E-24 191.4 32.1 173 73-276 21-193 (417)
20 PRK09705 cynX putative cyanate 99.9 1.8E-19 3.9E-24 189.9 31.7 150 86-272 26-176 (393)
21 PRK11646 multidrug resistance 99.9 1.9E-19 4.1E-24 190.2 31.7 169 72-276 13-181 (400)
22 TIGR00893 2A0114 d-galactonate 99.9 2.1E-19 4.6E-24 186.9 31.3 154 90-278 14-167 (399)
23 KOG0569 Permease of the major 99.9 2E-20 4.3E-25 197.3 23.0 345 108-539 63-471 (485)
24 PRK10054 putative transporter; 99.9 4.1E-19 8.9E-24 187.2 32.7 175 67-277 5-179 (395)
25 PRK14995 methyl viologen resis 99.9 5.9E-19 1.3E-23 191.6 34.2 180 67-282 4-184 (495)
26 PRK15402 multidrug efflux syst 99.9 7.5E-19 1.6E-23 185.7 33.6 173 70-278 14-186 (406)
27 PRK10504 putative transporter; 99.9 1E-18 2.2E-23 188.4 34.9 178 68-281 9-186 (471)
28 PRK12307 putative sialic acid 99.9 1.5E-19 3.2E-24 192.1 28.0 167 66-268 15-181 (426)
29 PRK10642 proline/glycine betai 99.9 1.2E-18 2.6E-23 188.9 35.0 175 68-270 15-203 (490)
30 TIGR00891 2A0112 putative sial 99.9 4.8E-19 1E-23 185.9 30.1 174 63-272 6-181 (405)
31 PRK09874 drug efflux system pr 99.9 1.8E-18 3.9E-23 182.4 34.1 172 70-278 15-191 (408)
32 TIGR00879 SP MFS transporter, 99.8 1.2E-19 2.6E-24 194.0 24.4 155 92-278 50-215 (481)
33 PRK09556 uhpT sugar phosphate 99.8 2.6E-19 5.6E-24 192.9 27.1 158 91-278 50-210 (467)
34 PRK09952 shikimate transporter 99.8 2.9E-18 6.2E-23 183.3 34.8 179 64-270 17-210 (438)
35 TIGR00892 2A0113 monocarboxyla 99.8 5.2E-19 1.1E-23 189.9 29.3 151 93-279 42-193 (455)
36 PRK10213 nepI ribonucleoside t 99.8 6.7E-18 1.5E-22 177.9 36.2 175 63-273 14-188 (394)
37 PF00854 PTR2: POT family; In 99.8 6E-21 1.3E-25 199.6 12.4 268 136-436 1-305 (372)
38 TIGR00900 2A0121 H+ Antiporter 99.8 1.6E-18 3.5E-23 178.9 30.4 173 74-277 4-176 (365)
39 TIGR00894 2A0114euk Na(+)-depe 99.8 5.1E-19 1.1E-23 190.4 27.7 147 99-278 70-217 (465)
40 PRK10406 alpha-ketoglutarate t 99.8 4.3E-18 9.4E-23 181.6 33.9 177 67-271 20-210 (432)
41 PRK11273 glpT sn-glycerol-3-ph 99.8 7.5E-18 1.6E-22 180.8 35.0 156 91-278 50-206 (452)
42 TIGR00898 2A0119 cation transp 99.8 1.1E-19 2.4E-24 197.6 21.1 147 94-278 113-262 (505)
43 TIGR00710 efflux_Bcr_CflA drug 99.8 7.7E-18 1.7E-22 175.8 33.8 177 67-279 3-179 (385)
44 PRK15403 multidrug efflux syst 99.8 1.5E-17 3.3E-22 176.4 35.5 150 94-278 40-189 (413)
45 TIGR00890 2A0111 Oxalate/Forma 99.8 2.4E-18 5.2E-23 178.3 27.8 153 90-278 23-175 (377)
46 PRK03893 putative sialic acid 99.8 5.2E-18 1.1E-22 183.9 31.0 168 65-268 16-183 (496)
47 COG2271 UhpC Sugar phosphate p 99.8 1.1E-18 2.4E-23 176.9 23.7 173 72-279 28-205 (448)
48 KOG0254 Predicted transporter 99.8 8E-19 1.7E-23 191.3 24.3 360 87-535 64-496 (513)
49 PRK10091 MFS transport protein 99.8 1.6E-17 3.5E-22 174.2 33.3 173 69-277 3-175 (382)
50 KOG2532 Permease of the major 99.8 7.9E-19 1.7E-23 186.9 23.2 148 99-279 67-215 (466)
51 PRK03699 putative transporter; 99.8 2E-17 4.4E-22 174.2 32.8 175 65-275 3-178 (394)
52 TIGR00897 2A0118 polyol permea 99.8 3.5E-17 7.5E-22 172.9 34.3 176 64-271 8-184 (402)
53 cd06174 MFS The Major Facilita 99.8 1.3E-17 2.9E-22 170.6 30.0 170 73-278 3-172 (352)
54 TIGR00899 2A0120 sugar efflux 99.8 2.2E-17 4.9E-22 171.8 31.6 169 75-278 3-174 (375)
55 PRK03633 putative MFS family t 99.8 2E-17 4.2E-22 173.5 31.2 152 69-256 6-157 (381)
56 TIGR00711 efflux_EmrB drug res 99.8 1E-17 2.2E-22 180.9 29.0 176 70-281 3-178 (485)
57 PLN00028 nitrate transmembrane 99.8 4.9E-17 1.1E-21 175.7 34.0 175 67-278 34-217 (476)
58 PRK10473 multidrug efflux syst 99.8 6.3E-17 1.4E-21 170.1 33.4 171 72-278 6-176 (392)
59 PF07690 MFS_1: Major Facilita 99.8 2.8E-18 6.1E-23 176.4 22.2 167 75-276 2-168 (352)
60 PRK11652 emrD multidrug resist 99.8 6.6E-17 1.4E-21 170.1 32.8 174 67-276 6-179 (394)
61 TIGR00895 2A0115 benzoate tran 99.8 4.5E-17 9.7E-22 170.2 30.7 177 65-277 13-189 (398)
62 PRK15011 sugar efflux transpor 99.8 9.9E-17 2.2E-21 168.9 33.2 173 70-278 16-192 (393)
63 PRK15034 nitrate/nitrite trans 99.8 2E-16 4.3E-21 167.6 34.7 196 51-279 13-231 (462)
64 TIGR00712 glpT glycerol-3-phos 99.8 5.6E-17 1.2E-21 173.4 29.9 178 68-278 26-204 (438)
65 PRK15075 citrate-proton sympor 99.8 1E-16 2.2E-21 171.1 31.9 177 63-267 9-199 (434)
66 PRK11195 lysophospholipid tran 99.8 3.3E-16 7.1E-21 165.1 34.8 163 70-272 4-166 (393)
67 KOG1330 Sugar transporter/spin 99.8 2.2E-19 4.8E-24 183.6 9.8 180 65-280 29-209 (493)
68 TIGR00881 2A0104 phosphoglycer 99.8 3.3E-17 7.2E-22 169.9 25.3 154 90-278 15-169 (379)
69 PRK11043 putative transporter; 99.8 7.3E-16 1.6E-20 162.5 33.2 150 94-278 30-179 (401)
70 PRK11102 bicyclomycin/multidru 99.8 6.5E-16 1.4E-20 161.2 31.0 155 88-278 10-164 (377)
71 PRK09528 lacY galactoside perm 99.8 2.9E-16 6.2E-21 166.9 28.3 179 70-278 11-189 (420)
72 TIGR00902 2A0127 phenyl propri 99.8 1.3E-15 2.7E-20 159.9 32.4 159 72-268 7-167 (382)
73 PF00083 Sugar_tr: Sugar (and 99.8 6E-22 1.3E-26 212.1 -16.9 344 106-534 47-448 (451)
74 KOG0255 Synaptic vesicle trans 99.8 9.6E-17 2.1E-21 175.4 23.7 141 97-275 110-250 (521)
75 PRK08633 2-acyl-glycerophospho 99.7 2.3E-15 5E-20 179.5 35.4 155 69-255 9-165 (1146)
76 PRK10133 L-fucose transporter; 99.7 3.2E-15 7E-20 159.7 32.8 154 67-253 24-177 (438)
77 PRK11010 ampG muropeptide tran 99.7 3.4E-15 7.4E-20 161.9 33.4 176 68-277 11-192 (491)
78 TIGR00882 2A0105 oligosacchari 99.7 3.1E-15 6.6E-20 157.6 30.4 178 70-277 3-180 (396)
79 PF05977 MFS_3: Transmembrane 99.7 1.2E-14 2.6E-19 157.4 35.4 178 70-278 11-188 (524)
80 COG2223 NarK Nitrate/nitrite t 99.7 9.2E-15 2E-19 148.8 30.2 183 65-282 10-195 (417)
81 TIGR00886 2A0108 nitrite extru 99.7 2.8E-15 6.1E-20 155.5 26.0 158 71-264 3-171 (366)
82 PRK06814 acylglycerophosphoeth 99.7 1.2E-14 2.6E-19 173.4 34.3 146 96-275 42-190 (1140)
83 TIGR00889 2A0110 nucleoside tr 99.7 4.9E-14 1.1E-18 149.7 34.9 163 71-274 4-174 (418)
84 TIGR00805 oat sodium-independe 99.7 4.4E-15 9.6E-20 165.1 25.3 209 64-279 27-280 (633)
85 KOG0252 Inorganic phosphate tr 99.7 3.1E-15 6.6E-20 152.8 21.7 141 102-270 81-236 (538)
86 TIGR00883 2A0106 metabolite-pr 99.7 9E-15 2E-19 152.4 26.1 165 81-273 5-184 (394)
87 TIGR00885 fucP L-fucose:H+ sym 99.7 6.5E-14 1.4E-18 148.4 32.5 173 70-275 4-202 (410)
88 COG2271 UhpC Sugar phosphate p 99.7 2E-16 4.4E-21 160.6 12.2 178 70-279 253-433 (448)
89 PRK11128 putative 3-phenylprop 99.7 7.3E-14 1.6E-18 146.5 31.5 156 78-273 13-172 (382)
90 TIGR00792 gph sugar (Glycoside 99.7 1.6E-14 3.5E-19 153.8 25.7 175 79-281 9-195 (437)
91 PRK11902 ampG muropeptide tran 99.7 2.5E-13 5.5E-18 143.4 33.6 167 75-275 5-177 (402)
92 TIGR00896 CynX cyanate transpo 99.7 1.8E-14 4E-19 149.3 24.4 144 90-270 20-165 (355)
93 PRK10642 proline/glycine betai 99.6 5.3E-14 1.2E-18 152.6 21.6 180 67-278 248-428 (490)
94 TIGR00806 rfc RFC reduced fola 99.6 1.5E-12 3.3E-17 136.2 30.0 154 89-279 45-202 (511)
95 KOG0253 Synaptic vesicle trans 99.6 1.5E-13 3.3E-18 136.5 21.2 170 88-294 96-265 (528)
96 COG0738 FucP Fucose permease [ 99.6 9.5E-13 2.1E-17 133.4 27.0 152 70-254 14-165 (422)
97 KOG2615 Permease of the major 99.6 2.7E-13 5.9E-18 135.7 22.3 116 103-254 66-181 (451)
98 TIGR00788 fbt folate/biopterin 99.6 9E-13 2E-17 142.0 27.8 175 70-278 27-207 (468)
99 TIGR01301 GPH_sucrose GPH fami 99.6 8.5E-12 1.9E-16 133.3 32.9 198 70-283 5-221 (477)
100 KOG3764 Vesicular amine transp 99.6 1.3E-13 2.8E-18 138.7 17.3 151 99-283 100-250 (464)
101 KOG2504 Monocarboxylate transp 99.6 1E-12 2.2E-17 141.8 25.3 174 72-281 45-222 (509)
102 PF06609 TRI12: Fungal trichot 99.6 1.6E-12 3.5E-17 140.9 26.9 150 90-276 64-213 (599)
103 TIGR00901 2A0125 AmpG-related 99.5 1.6E-12 3.4E-17 134.8 25.8 158 88-278 6-176 (356)
104 TIGR02718 sider_RhtX_FptX side 99.5 3.3E-11 7.2E-16 126.7 31.4 177 71-279 3-183 (390)
105 PRK09556 uhpT sugar phosphate 99.5 1.2E-12 2.6E-17 141.2 19.7 177 69-278 258-447 (467)
106 PRK09669 putative symporter Ya 99.5 1.1E-11 2.4E-16 132.8 25.6 182 72-280 12-204 (444)
107 PRK10429 melibiose:sodium symp 99.5 2.2E-11 4.7E-16 131.6 26.6 177 74-278 11-199 (473)
108 PRK15011 sugar efflux transpor 99.5 8.5E-12 1.8E-16 131.4 22.8 171 72-278 219-389 (393)
109 KOG2533 Permease of the major 99.5 2.4E-11 5.3E-16 130.1 25.9 150 96-280 72-227 (495)
110 PF03825 Nuc_H_symport: Nucleo 99.4 1.3E-10 2.8E-15 122.4 30.5 117 73-218 6-122 (400)
111 PRK09848 glucuronide transport 99.4 4.5E-11 9.7E-16 128.2 26.9 157 69-251 8-173 (448)
112 COG2807 CynX Cyanate permease 99.4 3.8E-10 8.3E-15 113.1 30.4 173 68-278 11-184 (395)
113 PRK05122 major facilitator sup 99.4 1.5E-11 3.3E-16 129.5 20.8 170 79-286 226-395 (399)
114 PF01306 LacY_symp: LacY proto 99.4 3.9E-11 8.4E-16 124.8 23.1 176 69-278 7-186 (412)
115 PRK09952 shikimate transporter 99.4 2.5E-11 5.4E-16 129.8 22.0 183 66-279 247-432 (438)
116 TIGR01299 synapt_SV2 synaptic 99.4 1.3E-11 2.9E-16 138.4 20.6 132 111-278 601-732 (742)
117 cd06174 MFS The Major Facilita 99.4 2E-11 4.3E-16 124.9 19.9 173 70-277 176-349 (352)
118 TIGR00890 2A0111 Oxalate/Forma 99.4 1.2E-11 2.7E-16 127.9 18.4 169 71-273 207-375 (377)
119 PRK03699 putative transporter; 99.4 1.7E-11 3.6E-16 129.2 19.4 173 70-278 206-378 (394)
120 TIGR00899 2A0120 sugar efflux 99.4 3.5E-11 7.7E-16 125.1 20.3 165 78-278 208-372 (375)
121 PTZ00207 hypothetical protein; 99.4 4.4E-11 9.6E-16 130.5 20.7 180 64-278 23-203 (591)
122 PRK11462 putative transporter; 99.4 1.1E-09 2.4E-14 117.9 31.0 182 73-281 13-205 (460)
123 PRK11273 glpT sn-glycerol-3-ph 99.4 2.9E-11 6.2E-16 129.9 18.8 178 69-278 253-433 (452)
124 PF13347 MFS_2: MFS/sugar tran 99.3 9.4E-11 2E-15 125.0 22.4 177 79-282 11-200 (428)
125 PRK09874 drug efflux system pr 99.3 5E-11 1.1E-15 125.6 19.7 165 79-278 229-396 (408)
126 PRK03893 putative sialic acid 99.3 4.7E-11 1E-15 129.5 19.3 150 87-269 293-442 (496)
127 TIGR00893 2A0114 d-galactonate 99.3 8.2E-11 1.8E-15 122.2 20.2 180 69-277 215-396 (399)
128 PRK11551 putative 3-hydroxyphe 99.3 8.7E-11 1.9E-15 124.0 20.5 169 73-277 224-393 (406)
129 PRK11663 regulatory protein Uh 99.3 6.9E-11 1.5E-15 126.2 19.8 178 70-279 244-423 (434)
130 TIGR00880 2_A_01_02 Multidrug 99.3 9.5E-12 2.1E-16 109.5 10.7 131 113-278 6-136 (141)
131 PRK09705 cynX putative cyanate 99.3 2E-10 4.3E-15 121.1 22.6 178 70-284 206-385 (393)
132 TIGR00883 2A0106 metabolite-pr 99.3 3.6E-11 7.9E-16 125.2 16.8 169 69-269 219-390 (394)
133 TIGR00889 2A0110 nucleoside tr 99.3 8.9E-11 1.9E-15 124.8 19.1 177 73-281 212-403 (418)
134 PRK03545 putative arabinose tr 99.3 2.6E-10 5.7E-15 119.8 22.3 172 72-279 208-379 (390)
135 PF11700 ATG22: Vacuole efflux 99.3 1.2E-08 2.6E-13 109.8 35.1 64 439-519 402-465 (477)
136 TIGR00891 2A0112 putative sial 99.3 7.4E-11 1.6E-15 123.7 17.7 165 66-264 235-400 (405)
137 PRK09528 lacY galactoside perm 99.3 3E-11 6.5E-16 128.3 14.8 157 87-278 241-401 (420)
138 PRK10489 enterobactin exporter 99.3 1.3E-10 2.8E-15 123.3 19.3 162 86-282 240-401 (417)
139 PRK15075 citrate-proton sympor 99.3 1.8E-10 3.9E-15 123.1 19.7 161 67-259 236-398 (434)
140 PRK12382 putative transporter; 99.3 1.7E-10 3.6E-15 121.4 18.7 161 80-278 227-387 (392)
141 TIGR00902 2A0127 phenyl propri 99.3 4.7E-10 1E-14 117.7 21.7 169 69-275 205-374 (382)
142 TIGR00897 2A0118 polyol permea 99.3 4.6E-10 9.9E-15 118.6 21.6 176 70-278 223-399 (402)
143 PRK03633 putative MFS family t 99.3 4.4E-10 9.5E-15 117.8 21.1 154 83-275 214-367 (381)
144 TIGR00879 SP MFS transporter, 99.2 2.6E-10 5.7E-15 121.8 18.3 189 68-281 283-471 (481)
145 PF11700 ATG22: Vacuole efflux 99.2 7E-10 1.5E-14 119.2 21.3 184 68-278 280-466 (477)
146 PRK11010 ampG muropeptide tran 99.2 7.7E-10 1.7E-14 120.1 21.8 172 78-280 231-403 (491)
147 PRK10406 alpha-ketoglutarate t 99.2 6.9E-10 1.5E-14 118.5 21.0 170 77-278 251-422 (432)
148 COG2814 AraJ Arabinose efflux 99.2 1.6E-09 3.4E-14 111.8 21.5 179 69-283 211-389 (394)
149 TIGR00712 glpT glycerol-3-phos 99.2 3.4E-10 7.4E-15 121.1 17.0 178 70-280 252-433 (438)
150 TIGR00892 2A0113 monocarboxyla 99.2 3E-10 6.5E-15 122.2 16.6 171 70-275 242-416 (455)
151 KOG2325 Predicted transporter/ 99.2 9.5E-10 2.1E-14 116.0 19.2 191 61-282 26-231 (488)
152 PLN00028 nitrate transmembrane 99.2 7.3E-10 1.6E-14 119.9 18.7 175 71-280 254-433 (476)
153 TIGR01272 gluP glucose/galacto 99.2 1.4E-09 3E-14 111.0 19.1 164 68-269 139-304 (310)
154 TIGR00881 2A0104 phosphoglycer 99.2 3.5E-10 7.5E-15 117.1 14.2 161 70-262 217-379 (379)
155 PRK12307 putative sialic acid 99.1 3.2E-09 6.9E-14 112.8 20.6 149 84-266 246-394 (426)
156 TIGR02332 HpaX 4-hydroxyphenyl 99.1 1.2E-09 2.6E-14 115.9 16.3 164 70-268 243-409 (412)
157 PRK15402 multidrug efflux syst 99.1 7.9E-09 1.7E-13 109.2 22.4 171 71-272 217-387 (406)
158 COG2223 NarK Nitrate/nitrite t 99.1 2.4E-09 5.2E-14 109.6 16.7 181 69-278 218-399 (417)
159 KOG4686 Predicted sugar transp 99.1 2.1E-09 4.6E-14 103.8 15.0 170 61-267 256-429 (459)
160 COG2211 MelB Na+/melibiose sym 99.1 5.1E-08 1.1E-12 102.8 26.6 183 70-279 13-206 (467)
161 TIGR00900 2A0121 H+ Antiporter 99.1 3E-09 6.4E-14 109.7 17.2 153 71-257 212-365 (365)
162 PRK10091 MFS transport protein 99.1 9.1E-09 2E-13 107.9 20.6 170 72-277 202-373 (382)
163 PRK11128 putative 3-phenylprop 99.1 1.2E-08 2.5E-13 107.1 21.0 165 70-272 206-371 (382)
164 PRK10504 putative transporter; 99.1 9.4E-09 2E-13 110.8 20.4 157 70-258 262-418 (471)
165 TIGR00894 2A0114euk Na(+)-depe 99.1 1E-08 2.2E-13 110.4 20.0 179 67-278 259-448 (465)
166 TIGR00882 2A0105 oligosacchari 99.0 7.3E-09 1.6E-13 109.1 18.2 169 73-276 219-391 (396)
167 TIGR02718 sider_RhtX_FptX side 99.0 1.4E-08 3E-13 106.8 20.3 174 71-274 210-385 (390)
168 TIGR00895 2A0115 benzoate tran 99.0 6.6E-09 1.4E-13 108.4 17.0 149 68-252 249-397 (398)
169 TIGR00887 2A0109 phosphate:H+ 99.0 5.8E-09 1.3E-13 113.6 16.7 173 72-276 291-485 (502)
170 TIGR00792 gph sugar (Glycoside 99.0 1.1E-08 2.4E-13 109.0 18.3 160 70-258 223-383 (437)
171 PRK10133 L-fucose transporter; 99.0 1.8E-08 3.9E-13 107.8 19.6 166 74-277 263-430 (438)
172 TIGR00711 efflux_EmrB drug res 99.0 8.1E-09 1.8E-13 111.5 17.0 156 70-256 256-411 (485)
173 PF03092 BT1: BT1 family; Int 99.0 2.2E-07 4.7E-12 99.2 27.4 163 90-281 10-176 (433)
174 PF03209 PUCC: PUCC protein; 99.0 7.9E-07 1.7E-11 91.5 29.8 142 96-257 6-153 (403)
175 PRK10077 xylE D-xylose transpo 99.0 3.3E-08 7.2E-13 106.6 21.0 157 94-281 295-458 (479)
176 KOG4686 Predicted sugar transp 99.0 2.6E-09 5.7E-14 103.2 10.7 156 70-257 45-200 (459)
177 TIGR00710 efflux_Bcr_CflA drug 99.0 4.7E-08 1E-12 101.9 21.1 160 73-263 210-369 (385)
178 PF05977 MFS_3: Transmembrane 99.0 3.6E-08 7.8E-13 107.2 20.1 169 74-277 223-391 (524)
179 PRK10213 nepI ribonucleoside t 99.0 7.9E-08 1.7E-12 101.4 22.3 167 71-273 218-384 (394)
180 PRK14995 methyl viologen resis 99.0 1.6E-08 3.5E-13 109.9 17.3 153 70-254 260-412 (495)
181 PRK08633 2-acyl-glycerophospho 99.0 2.3E-08 5E-13 119.7 20.1 162 71-267 234-397 (1146)
182 PRK10054 putative transporter; 98.9 2E-08 4.3E-13 106.0 16.8 171 72-277 209-381 (395)
183 PRK15034 nitrate/nitrite trans 98.9 6.5E-08 1.4E-12 103.0 20.5 184 70-278 253-452 (462)
184 PRK11902 ampG muropeptide tran 98.9 8.7E-08 1.9E-12 101.2 21.4 152 91-277 231-387 (402)
185 KOG2563 Permease of the major 98.9 1.6E-07 3.4E-12 97.0 22.2 165 61-256 37-203 (480)
186 TIGR00896 CynX cyanate transpo 98.9 4.3E-08 9.3E-13 101.6 18.2 153 70-257 198-350 (355)
187 PRK09848 glucuronide transport 98.9 3.2E-08 6.9E-13 106.2 17.6 162 70-258 229-391 (448)
188 COG2270 Permeases of the major 98.9 2.6E-08 5.6E-13 102.2 15.6 172 70-276 253-425 (438)
189 PRK11646 multidrug resistance 98.9 4.5E-08 9.8E-13 103.4 18.1 151 88-273 227-381 (400)
190 KOG3626 Organic anion transpor 98.9 3.1E-07 6.7E-12 101.0 24.3 208 69-284 96-347 (735)
191 TIGR00903 2A0129 major facilit 98.9 1.4E-07 2.9E-12 98.7 19.4 166 69-276 192-361 (368)
192 TIGR00898 2A0119 cation transp 98.9 4.5E-08 9.7E-13 106.5 16.4 132 112-278 362-493 (505)
193 PRK06814 acylglycerophosphoeth 98.9 6.3E-08 1.4E-12 116.0 18.4 184 70-268 226-410 (1140)
194 COG2270 Permeases of the major 98.9 1E-06 2.2E-11 90.6 24.3 107 90-222 36-150 (438)
195 PF13347 MFS_2: MFS/sugar tran 98.8 1.7E-07 3.6E-12 100.0 18.5 162 69-258 225-387 (428)
196 KOG0253 Synaptic vesicle trans 98.8 1.1E-07 2.3E-12 95.5 14.9 146 69-249 326-490 (528)
197 PF05631 DUF791: Protein of un 98.8 6.8E-07 1.5E-11 90.6 20.3 159 94-283 58-219 (354)
198 KOG0569 Permease of the major 98.8 4.3E-07 9.3E-12 96.6 19.7 191 67-286 267-460 (485)
199 PRK11195 lysophospholipid tran 98.8 5.2E-07 1.1E-11 95.1 20.3 158 84-277 220-377 (393)
200 PRK10429 melibiose:sodium symp 98.8 3.3E-07 7.2E-12 99.1 18.9 165 69-258 231-396 (473)
201 KOG2504 Monocarboxylate transp 98.8 6.7E-08 1.5E-12 104.6 13.1 176 69-280 298-476 (509)
202 TIGR00901 2A0125 AmpG-related 98.7 2E-07 4.4E-12 96.5 15.9 145 70-239 210-355 (356)
203 PRK11043 putative transporter; 98.7 1.4E-06 3E-11 91.8 22.2 150 80-261 214-363 (401)
204 COG2807 CynX Cyanate permease 98.7 9E-07 1.9E-11 89.2 19.1 167 70-271 209-376 (395)
205 PRK11102 bicyclomycin/multidru 98.7 1.5E-06 3.3E-11 90.5 21.4 147 72-250 197-344 (377)
206 PF07690 MFS_1: Major Facilita 98.7 1.4E-07 3E-12 96.8 13.1 142 73-246 210-352 (352)
207 TIGR00885 fucP L-fucose:H+ sym 98.7 7.9E-07 1.7E-11 94.3 18.4 164 71-272 234-404 (410)
208 PRK10473 multidrug efflux syst 98.7 1.7E-06 3.6E-11 91.0 20.6 69 87-156 221-289 (392)
209 PRK09669 putative symporter Ya 98.7 9E-07 1.9E-11 94.9 18.5 160 71-258 231-391 (444)
210 TIGR01272 gluP glucose/galacto 98.6 3.2E-06 6.9E-11 86.2 20.9 85 185-275 8-108 (310)
211 KOG2532 Permease of the major 98.6 8.3E-07 1.8E-11 95.1 16.0 182 69-279 258-446 (466)
212 KOG2816 Predicted transporter 98.6 1.2E-05 2.6E-10 85.9 23.9 160 88-287 40-206 (463)
213 PF03137 OATP: Organic Anion T 98.6 9E-09 1.9E-13 112.2 -0.9 203 74-284 8-254 (539)
214 TIGR00924 yjdL_sub1_fam amino 98.6 2.6E-06 5.7E-11 92.1 18.0 187 70-281 273-469 (475)
215 TIGR00886 2A0108 nitrite extru 98.5 8.8E-07 1.9E-11 91.8 12.7 139 71-241 227-365 (366)
216 PRK11652 emrD multidrug resist 98.5 1.3E-05 2.8E-10 84.3 20.9 139 89-260 227-365 (394)
217 PF03825 Nuc_H_symport: Nucleo 98.5 1.3E-05 2.9E-10 84.5 20.8 179 71-279 209-394 (400)
218 PF01306 LacY_symp: LacY proto 98.5 1.4E-05 3E-10 83.6 20.4 179 69-282 220-402 (412)
219 COG2211 MelB Na+/melibiose sym 98.4 5.1E-06 1.1E-10 87.8 15.7 161 70-257 237-398 (467)
220 COG0477 ProP Permeases of the 98.4 2E-05 4.4E-10 77.5 18.3 144 93-269 25-174 (338)
221 PF06813 Nodulin-like: Nodulin 98.4 2.9E-05 6.3E-10 76.0 18.7 155 67-253 1-155 (250)
222 PRK11462 putative transporter; 98.4 4.9E-05 1.1E-09 81.9 22.1 159 72-258 231-390 (460)
223 COG0738 FucP Fucose permease [ 98.3 4.5E-05 9.8E-10 78.2 17.7 156 70-263 237-392 (422)
224 PF03209 PUCC: PUCC protein; 98.3 8.1E-05 1.8E-09 76.9 19.2 171 75-276 214-394 (403)
225 PRK09584 tppB putative tripept 98.2 5.3E-05 1.2E-09 82.5 18.4 174 79-278 282-477 (500)
226 PRK10207 dipeptide/tripeptide 98.2 3.1E-05 6.8E-10 84.1 16.1 176 78-279 278-475 (489)
227 PRK15403 multidrug efflux syst 98.2 0.00013 2.7E-09 77.6 20.2 169 70-270 219-387 (413)
228 KOG3098 Uncharacterized conser 98.1 0.0018 3.8E-08 68.8 24.7 87 111-233 56-142 (461)
229 KOG3762 Predicted transporter 98.0 2.6E-05 5.6E-10 82.4 10.2 169 79-283 381-550 (618)
230 KOG2533 Permease of the major 98.0 3.5E-05 7.7E-10 83.0 11.6 163 70-265 274-441 (495)
231 KOG3764 Vesicular amine transp 98.0 1.3E-05 2.7E-10 81.8 7.4 165 88-279 289-453 (464)
232 TIGR01301 GPH_sucrose GPH fami 98.0 0.00031 6.7E-09 75.6 18.5 207 63-282 252-473 (477)
233 KOG0254 Predicted transporter 97.9 0.00036 7.9E-09 76.3 16.9 197 65-284 290-487 (513)
234 PF00083 Sugar_tr: Sugar (and 97.9 7.5E-08 1.6E-12 103.1 -11.9 188 71-285 254-441 (451)
235 TIGR00788 fbt folate/biopterin 97.9 3.9E-05 8.4E-10 82.9 9.0 136 97-257 280-415 (468)
236 PF06609 TRI12: Fungal trichot 97.7 0.0016 3.6E-08 71.4 18.0 154 65-251 306-463 (599)
237 KOG0252 Inorganic phosphate tr 97.7 7E-05 1.5E-09 77.8 6.9 180 69-280 304-498 (538)
238 PF12832 MFS_1_like: MFS_1 lik 97.7 0.00033 7.1E-09 55.6 9.2 67 77-145 8-74 (77)
239 TIGR00805 oat sodium-independe 97.7 0.0017 3.7E-08 72.8 18.2 178 70-255 331-581 (633)
240 PF01770 Folate_carrier: Reduc 97.7 0.054 1.2E-06 56.8 27.3 156 89-280 23-182 (412)
241 PF06963 FPN1: Ferroportin1 (F 97.5 0.14 3.1E-06 54.4 29.2 192 70-276 3-196 (432)
242 TIGR00769 AAA ADP/ATP carrier 97.5 0.23 4.9E-06 53.5 31.8 165 68-253 6-189 (472)
243 KOG3762 Predicted transporter 97.5 0.0081 1.8E-07 64.0 18.1 68 87-155 29-96 (618)
244 PF05978 UNC-93: Ion channel r 97.4 0.0047 1E-07 56.0 14.1 106 109-250 41-146 (156)
245 PTZ00207 hypothetical protein; 97.3 0.0025 5.4E-08 70.3 13.1 176 69-282 353-554 (591)
246 KOG0637 Sucrose transporter an 97.3 0.00026 5.7E-09 73.6 4.9 164 69-251 32-201 (498)
247 PRK03612 spermidine synthase; 97.3 0.029 6.3E-07 61.3 20.5 154 92-276 37-194 (521)
248 PRK15462 dipeptide/tripeptide 97.2 0.016 3.6E-07 62.7 17.5 156 70-252 269-437 (493)
249 KOG2615 Permease of the major 96.9 0.011 2.4E-07 60.5 12.4 152 69-254 260-413 (451)
250 PF06779 DUF1228: Protein of u 96.9 0.012 2.5E-07 47.4 10.0 66 90-156 12-77 (85)
251 KOG0255 Synaptic vesicle trans 96.7 0.067 1.5E-06 58.5 17.8 126 94-254 342-467 (521)
252 KOG2563 Permease of the major 96.7 0.0091 2E-07 62.4 10.2 185 70-286 267-456 (480)
253 TIGR00926 2A1704 Peptide:H+ sy 96.7 0.71 1.5E-05 51.9 25.5 249 100-411 15-273 (654)
254 PF03137 OATP: Organic Anion T 96.6 0.00049 1.1E-08 75.4 0.0 187 63-256 300-515 (539)
255 KOG2816 Predicted transporter 96.5 0.013 2.8E-07 62.9 9.7 129 91-254 263-391 (463)
256 KOG3574 Acetyl-CoA transporter 96.5 0.21 4.6E-06 51.3 17.4 156 65-249 27-189 (510)
257 TIGR00880 2_A_01_02 Multidrug 96.2 0.061 1.3E-06 46.3 10.9 67 437-521 71-137 (141)
258 PF02487 CLN3: CLN3 protein; 95.9 2.7 5.8E-05 44.2 26.2 125 114-279 68-194 (402)
259 KOG4332 Predicted sugar transp 95.9 0.007 1.5E-07 58.9 3.7 156 90-276 57-216 (454)
260 COG3104 PTR2 Dipeptide/tripept 95.8 0.16 3.5E-06 54.1 13.7 87 185-277 392-484 (498)
261 KOG1330 Sugar transporter/spin 95.3 0.0062 1.3E-07 63.8 0.9 78 437-531 141-218 (493)
262 PF06963 FPN1: Ferroportin1 (F 95.2 0.68 1.5E-05 49.3 15.8 136 88-249 277-412 (432)
263 KOG3626 Organic anion transpor 94.9 0.39 8.5E-06 53.8 13.4 183 65-254 389-648 (735)
264 KOG3098 Uncharacterized conser 94.8 1.2 2.6E-05 47.6 16.4 116 116-248 290-407 (461)
265 PF02487 CLN3: CLN3 protein; 94.1 1 2.2E-05 47.4 13.6 63 185-253 333-395 (402)
266 TIGR00806 rfc RFC reduced fola 93.7 9.4 0.0002 41.2 20.2 40 438-477 135-174 (511)
267 PF06813 Nodulin-like: Nodulin 92.8 4.4 9.6E-05 39.8 15.1 47 231-278 39-85 (250)
268 COG3202 ATP/ADP translocase [E 91.5 23 0.00049 38.2 24.1 167 67-254 25-209 (509)
269 TIGR00769 AAA ADP/ATP carrier 90.2 30 0.00065 37.4 19.6 71 196-271 275-345 (472)
270 KOG3097 Predicted membrane pro 89.8 4.9 0.00011 40.8 11.8 121 62-219 22-142 (390)
271 KOG2325 Predicted transporter/ 89.5 0.85 1.8E-05 49.0 6.8 196 67-272 260-467 (488)
272 PF03219 TLC: TLC ATP/ADP tran 88.8 39 0.00085 36.7 26.9 167 67-254 22-205 (491)
273 TIGR00939 2a57 Equilibrative N 87.9 4 8.6E-05 43.7 10.7 119 106-248 308-427 (437)
274 KOG4332 Predicted sugar transp 86.8 3.7 8E-05 40.5 8.6 140 107-275 284-426 (454)
275 PF00854 PTR2: POT family; In 86.5 2.4 5.2E-05 44.1 8.0 89 422-528 36-129 (372)
276 PF03092 BT1: BT1 family; Int 81.9 5.6 0.00012 42.5 8.5 54 198-257 329-382 (433)
277 KOG0637 Sucrose transporter an 78.0 4.1 9E-05 43.2 5.6 91 63-154 273-380 (498)
278 PF03219 TLC: TLC ATP/ADP tran 75.5 1.3E+02 0.0028 32.8 19.4 69 197-270 292-360 (491)
279 PRK10263 DNA translocase FtsK; 70.9 38 0.00082 40.8 11.6 13 120-132 63-75 (1355)
280 PF11947 DUF3464: Protein of u 62.1 21 0.00046 32.1 5.8 32 206-243 113-144 (153)
281 PF01733 Nucleoside_tran: Nucl 59.9 3.2 6.8E-05 42.2 0.2 117 110-248 187-303 (309)
282 PF07672 MFS_Mycoplasma: Mycop 57.8 1.3E+02 0.0028 29.8 10.8 33 108-140 144-176 (267)
283 PF13000 Acatn: Acetyl-coenzym 57.2 2.2E+02 0.0047 31.1 13.2 57 194-256 412-468 (544)
284 PF06912 DUF1275: Protein of u 56.1 1.8E+02 0.0039 27.4 18.8 39 234-273 167-205 (209)
285 COG5336 Uncharacterized protei 53.9 49 0.0011 27.7 6.1 22 123-144 60-81 (116)
286 TIGR00939 2a57 Equilibrative N 51.7 3.3E+02 0.0072 29.1 15.5 32 186-218 105-136 (437)
287 COG3619 Predicted membrane pro 47.9 2.7E+02 0.0058 26.9 17.7 67 68-135 11-84 (226)
288 KOG1479 Nucleoside transporter 45.0 58 0.0013 34.3 6.6 91 108-220 285-376 (406)
289 KOG1479 Nucleoside transporter 44.6 4.1E+02 0.0089 28.1 16.8 34 186-220 116-149 (406)
290 KOG1237 H+/oligopeptide sympor 41.9 56 0.0012 36.3 6.4 68 183-256 454-521 (571)
291 PF09527 ATPase_gene1: Putativ 41.8 1.3E+02 0.0028 21.6 6.5 31 114-144 9-39 (55)
292 TIGR01666 YCCS hypothetical me 41.1 2.7E+02 0.0059 31.8 11.7 27 130-156 51-77 (704)
293 COG3202 ATP/ADP translocase [E 40.7 5.1E+02 0.011 28.2 18.7 77 196-277 293-370 (509)
294 PF12273 RCR: Chitin synthesis 40.5 13 0.00028 32.5 0.9 18 259-276 1-18 (130)
295 KOG2927 Membrane component of 38.6 50 0.0011 33.7 4.7 31 443-476 207-237 (372)
296 TIGR01667 YCCS_YHJK integral m 35.6 2E+02 0.0044 32.8 9.7 28 129-156 50-77 (701)
297 COG4262 Predicted spermidine s 34.4 5.6E+02 0.012 26.8 14.6 100 91-214 32-132 (508)
298 KOG3574 Acetyl-CoA transporter 32.2 2.4E+02 0.0052 29.8 8.5 58 196-259 378-435 (510)
299 COG5336 Uncharacterized protei 30.3 3E+02 0.0065 23.2 7.1 33 446-478 35-67 (116)
300 PF05631 DUF791: Protein of un 29.1 6.7E+02 0.014 26.0 17.4 52 195-246 247-299 (354)
301 PF01770 Folate_carrier: Reduc 27.8 7.6E+02 0.016 26.2 12.2 83 108-217 288-370 (412)
302 PF12606 RELT: Tumour necrosis 27.6 1.1E+02 0.0024 21.9 3.7 28 505-532 5-34 (50)
303 PF01102 Glycophorin_A: Glycop 26.3 73 0.0016 27.5 3.2 27 503-530 70-96 (122)
304 COG1230 CzcD Co/Zn/Cd efflux s 26.0 6.9E+02 0.015 25.2 12.5 59 87-151 42-102 (296)
305 PF07857 DUF1632: CEO family ( 25.9 3.4E+02 0.0073 26.7 8.1 30 446-475 72-101 (254)
306 PRK03612 spermidine synthase; 25.8 4.1E+02 0.0089 29.1 9.8 27 451-477 143-169 (521)
307 KOG3880 Predicted small molecu 24.1 2.7E+02 0.0058 28.6 7.0 59 185-249 340-398 (409)
308 KOG4112 Signal peptidase subun 23.9 2.8E+02 0.006 22.7 5.7 30 229-259 23-52 (101)
309 PF07672 MFS_Mycoplasma: Mycop 23.6 46 0.001 32.8 1.7 69 450-531 3-71 (267)
310 KOG3880 Predicted small molecu 22.4 8.7E+02 0.019 25.0 11.2 34 443-476 368-401 (409)
311 PF06645 SPC12: Microsomal sig 22.1 3.9E+02 0.0084 20.9 6.6 41 233-276 12-52 (76)
312 TIGR02230 ATPase_gene1 F0F1-AT 21.5 3.2E+02 0.007 22.7 5.9 46 110-155 47-92 (100)
313 COG2233 UraA Xanthine/uracil p 21.3 7.6E+02 0.016 26.6 10.2 59 90-149 34-93 (451)
314 PF01102 Glycophorin_A: Glycop 20.8 88 0.0019 27.1 2.6 9 273-281 82-90 (122)
315 TIGR00927 2A1904 K+-dependent 20.6 1.1E+03 0.023 28.1 11.6 41 90-132 953-993 (1096)
316 PF13829 DUF4191: Domain of un 20.1 2.8E+02 0.0061 26.7 6.1 51 455-527 27-77 (224)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-54 Score=467.19 Aligned_cols=469 Identities=45% Similarity=0.750 Sum_probs=421.0
Q ss_pred CCccccCCCCCcccc---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHH
Q 008896 49 TTPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLG 125 (549)
Q Consensus 49 ~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~ 125 (549)
.+.+++++++. .+. +++.|+.+..++..+.++++++|++..+++.|+++++|.+...+...++.|.+...+.|+++
T Consensus 15 ~~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g 93 (571)
T KOG1237|consen 15 FTSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLG 93 (571)
T ss_pred cceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHH
Confidence 35567777666 554 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcc
Q 008896 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (549)
Q Consensus 126 G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 205 (549)
+++||.|+||++++.++.+++++|+.++++++..+.+.|. .| ...+....|+.+.......++.++.+.++|.|+.+
T Consensus 94 ~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 94 AFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 9999999999999999999999999999999999998886 44 11112346999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008896 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (549)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (549)
++..++.+||+++..+.+++.+.++|+|+|+..++|..++-.+..|++++.||.++|.++.+++++++++++.+.+.|++
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 99999999999988888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccc---cCCCCCCc
Q 008896 286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWK 362 (549)
Q Consensus 286 ~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~~~~~ 362 (549)
++|.++|+.++.+|++++.++|...++.++.. + +..........++++++++|+|+.+..++ ....+||+
T Consensus 251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~ 323 (571)
T KOG1237|consen 251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR 323 (571)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c------cccccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence 99999999999999999999999888776543 3 11112223344577899999999876543 23468999
Q ss_pred ccCchhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccCC--------------------------------
Q 008896 363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-------------------------------- 410 (549)
Q Consensus 363 ~~~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~~-------------------------------- 410 (549)
+|+.++|||+|++++++|+|++.++++.++.|+.++++.|+..||+++
T Consensus 324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP 403 (571)
T KOG1237|consen 324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP 403 (571)
T ss_pred CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence 999999999999999999999999999999999999999999999977
Q ss_pred ------CCCCCCCchHHHHHHHHHHHHHHHHH------------------------------------------HHHHHH
Q 008896 411 ------GHPRGASQLQRVGIGLAVSILSVIWA------------------------------------------GLLEFL 442 (549)
Q Consensus 411 ------~~~~~~~~l~~i~~G~~~~~~~~~~a------------------------------------------~~~~~~ 442 (549)
+++.+++.++|+++|+++.+++|..+ +.+||+
T Consensus 404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFf 483 (571)
T KOG1237|consen 404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFF 483 (571)
T ss_pred hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 34457889999999999999998887 889999
Q ss_pred HhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccc-CCCcccchhHHHHHHHHHHHHHHHHHHhh
Q 008896 443 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYS 521 (549)
Q Consensus 443 ~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~-~~~n~~~~~~~f~~~a~~~~~~~~~~~~~ 521 (549)
|+++|++||+.+++++.+..++|++++.+++.++...++ + ..+|++ +|+|.+|+++|||++++++.++.+.|.++
T Consensus 484 Y~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~ 559 (571)
T KOG1237|consen 484 YSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLIC 559 (571)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEE
Confidence 999999999999999999999999999999999998775 3 468999 99999999999999999999999999999
Q ss_pred hhccccccccC
Q 008896 522 AYRYKYRSEQK 532 (549)
Q Consensus 522 ~~~~~~~~~~~ 532 (549)
+++|+++..++
T Consensus 560 ~~~y~~~~~~~ 570 (571)
T KOG1237|consen 560 AKRYDYKDDKD 570 (571)
T ss_pred EEeeeeccccC
Confidence 99999886543
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-33 Score=288.56 Aligned_cols=393 Identities=18% Similarity=0.244 Sum_probs=301.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~ 138 (549)
...+++|.++.++.+++.||++|||+...+..|++.+++ ++++++..+.+.|....++.+++|||+|||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 445678899999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 ~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
+..+.+++.+|.++++.+.. .....+++++.++++|+|++++++..+++|++|+
T Consensus 95 I~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred HHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence 99999999999999987620 1355789999999999999999999999999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccC--CCCChh---
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPL--- 293 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~--- 293 (549)
++++ |..+|+++|++.|+|+.++|.+.+++.++.||.++|.+.++.+.++++.++++++.+.... +...|+
T Consensus 149 ~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~ 224 (498)
T COG3104 149 DDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN 224 (498)
T ss_pred CCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence 9976 9999999999999999999999999999999999999999999999999999987765443 211221
Q ss_pred ---hHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchh-hH----hhhhhccccCCCCCCcccC
Q 008896 294 ---TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DK----AALELKEDVINPSPWKLCT 365 (549)
Q Consensus 294 ---~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~----a~~~~~~~~~~~~~~~~~~ 365 (549)
.....+++...... .+ .. ...+..+.. .. ....+-.+ ...| .
T Consensus 225 ~~~~~~~~~~~~~~~~~--------~~---~~-------------l~~~~~~~~~~~~~i~~~~~~~~~---~~~~---~ 274 (498)
T COG3104 225 FLLPVLGGLVVMILAAL--------LT---LL-------------LNQNTFSGVLLVISILIAIIYFAE---AFRS---P 274 (498)
T ss_pred hhhhhHHHHHHHHHHHH--------HH---HH-------------HHHHHHHHHHHHHHHHHHHHHHHH---Hhcc---C
Confidence 11111111111110 00 00 000000000 00 00000000 0111 1
Q ss_pred chhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhh-hccC-----C----------------------------C
Q 008896 366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTH-----M----------------------------G 411 (549)
Q Consensus 366 ~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~-~~~~-----~----------------------------~ 411 (549)
+.+ +|+||++..+++++..++||+++.|.++.+..|+.. .|++ + +
T Consensus 275 ~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~ 353 (498)
T COG3104 275 KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGR 353 (498)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhc
Confidence 123 789999999999999999999999999999888754 3444 1 3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhccchhHHHHHH
Q 008896 412 HPRGASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSA 456 (549)
Q Consensus 412 ~~~~~~~l~~i~~G~~~~~~~~~~a-----------------------------------~~~~~~~~~~P~~~rg~~~g 456 (549)
+.+.++...|+++|++++++++++. ..++.+++++|++++|.+||
T Consensus 354 ~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma 433 (498)
T COG3104 354 GNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMA 433 (498)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHH
Confidence 4456888899999999999888775 67888899999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 008896 457 YAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 528 (549)
Q Consensus 457 ~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~ 528 (549)
.+.+....|..++..+.+.... ++ +-.+..+...+|+.++.+.++..+......++.++.
T Consensus 434 ~wfLt~a~~~~l~g~va~~~~~-~~-----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~ 493 (498)
T COG3104 434 MWFLTVAAGQTLGGQVAGLTAV-TD-----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRM 493 (498)
T ss_pred HHHHHHHHHHHhhceecccccc-cc-----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 9999999999988888773211 11 001112345678888888887777777776665543
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=3.2e-30 Score=278.23 Aligned_cols=393 Identities=12% Similarity=0.153 Sum_probs=281.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+++||.++.+++.+++|++++|++..+++.|+++++|++..++.++.+.+....++.++++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999995599999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
++.++.++++++.. ....++++|+++|+|.|+..++..++++|++|+++++
T Consensus 90 ~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~-- 140 (489)
T PRK10207 90 VLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR-- 140 (489)
T ss_pred HHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh--
Confidence 99999999887521 1234568899999999999999999999999987622
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc--CCCCChhh--HHHH--
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--RVAQ-- 298 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~--~~~~-- 298 (549)
|++.+++++++.|+|..+||.+++++.++.|||+.|++..+..+++++.++..++.+++. ++++++.. ....
T Consensus 141 --~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~ 218 (489)
T PRK10207 141 --LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVL 218 (489)
T ss_pred --hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHH
Confidence 688999999999999999999999999999999999998776666666666655444332 22222221 1100
Q ss_pred --HHHHHHH-hhccccCCcccccccccCCCcccccCCcccccCCccchhhHhh------hhhccccCCCCCCcccCchhH
Q 008896 299 --VLVAAFR-KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LELKEDVINPSPWKLCTVTQV 369 (549)
Q Consensus 299 --v~~~a~~-~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~------~~~~~~~~~~~~~~~~~~~~v 369 (549)
....... ....... ++. .-.+.... ....+ ...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~-~~~------------------------~~~~~~~~~i~~~~f~~~~----------~~~~~~ 263 (489)
T PRK10207 219 LGSVVMIFVCAWLMHNV-EVA------------------------NLVLIVLSIVVTIIFFREA----------FKLDKT 263 (489)
T ss_pred HHHHHHHHHHHHHHhhh-hHH------------------------HHHHHHHHHHHHHHHHHHH----------hcCCHH
Confidence 0000000 0000000 000 00000000 00000 011122
Q ss_pred HHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHh-hhccCC---------------------------------CCCCC
Q 008896 370 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHPRG 415 (549)
Q Consensus 370 e~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~-~~~~~~---------------------------------~~~~~ 415 (549)
++++.+..+.+++..+++|..+.|..+.+..+.. .++... +++..
T Consensus 264 -~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~ 342 (489)
T PRK10207 264 -GRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKD 342 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3455566677778888899999998776665544 233321 34456
Q ss_pred CCchHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhccchhHHHHHHHHHH
Q 008896 416 ASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYAAL 460 (549)
Q Consensus 416 ~~~l~~i~~G~~~~~~~~~~a-----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~ 460 (549)
++...|+.+|+++.+++++.+ ..++++++.+|++++|.++|+++.
T Consensus 343 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 343 LSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 788899999988887776421 557788899999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhccccccccC
Q 008896 461 AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQK 532 (549)
Q Consensus 461 ~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 532 (549)
...+|+.++..+...+.. + ....++.. .+..+..+|..+++++++..++++++.++.++..+++
T Consensus 423 ~~~ig~~lg~~l~~~~~~-~---~~~~~~~~----~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 486 (489)
T PRK10207 423 TQAAAFLLGGYVATFTAV-P---DNITDPLE----TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTP 486 (489)
T ss_pred HHHHHHHHHHHHHHHhcc-c---cccccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999988876532 0 00000100 0123677888888888888888888888777664444
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=5.1e-30 Score=276.18 Aligned_cols=386 Identities=14% Similarity=0.154 Sum_probs=276.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
.++++.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.++.+++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45677889999999999999999999999999988 9999999999999999999999999999999955999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.+++.++.++++++ .+...+++++++.|+|.|+..++..++++|++|+++++
T Consensus 86 ~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 86 GIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 99999999888765 34566788999999999999999999999999876421
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHH-----
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA----- 297 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----- 297 (549)
.|+++++++|++.|+|..+||.+++++.++.||++.|++.++..+++++.+++.++.+++.++++++.+...
T Consensus 138 ---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
T TIGR00924 138 ---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214 (475)
T ss_pred ---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHH
Confidence 288899999999999999999999999999999999999887777776666666655554433222221100
Q ss_pred --HH----HHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCcccCchhHHH
Q 008896 298 --QV----LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE 371 (549)
Q Consensus 298 --~v----~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~ 371 (549)
.. +....+.... ..++ . ..+.+.+ ....+...+.... ..+| ..+++ +
T Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~~--~-------------~~~~~~~-----~~~~~~~~~~~~~-~~~~----~~~~~-~ 267 (475)
T TIGR00924 215 LLLALLAALALVFFCAWL-MHHV--V-------------IANILLM-----TVTLAVIIFFFRL-AFKP----RLDAV-A 267 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhcc--H-------------HHHHHHH-----HHHHHHHHHHHHH-HHhc----cCCHH-H
Confidence 00 0000010000 0000 0 0000000 0000001000000 0011 11233 3
Q ss_pred HHHHHhhchhhhHHHHHHHHhhhhhhHHHH-HHhhhccCC---------------------------------CCCCCCC
Q 008896 372 VKTLVRLVPIPACTIMLNVILTEFLTLSVQ-QAYTMNTHM---------------------------------GHPRGAS 417 (549)
Q Consensus 372 ~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~-q~~~~~~~~---------------------------------~~~~~~~ 417 (549)
+++....++++++.+++|..+.|..+.+.. +...+|..+ ++...++
T Consensus 268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~ 347 (475)
T TIGR00924 268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPT 347 (475)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344456788899999999999999886654 334455442 2334567
Q ss_pred chHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHHHhH
Q 008896 418 QLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGG 463 (549)
Q Consensus 418 ~l~~i~~G~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~~~~ 463 (549)
...|+++|+++.+++++.+ ..++++++++|+++||+++|++.+...
T Consensus 348 ~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~ 427 (475)
T TIGR00924 348 TPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA 427 (475)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888999998877766442 677788899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 464 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 526 (549)
Q Consensus 464 ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~ 526 (549)
+|+.+++.+.+...... + ...+|..+++++++..+++++..++.+
T Consensus 428 ~g~~l~~~~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 428 MGSLLGGYLATFGAVPQ--------G----------VTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHhccc--------c----------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887654321 1 255777777777777777777666554
No 5
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.97 E-value=8.3e-29 Score=272.65 Aligned_cols=294 Identities=25% Similarity=0.435 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
++||++.+.+..|+++.+|++.+.+..+...|....++.|++||+++|+++||++++.++.+++.+|.+++++++..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988875331111
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
.+ ......++++.+.++|.|+++++..++++|++++++ .+.|.++|+++|++.|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHH
Confidence 11 234557788999999999999999999999998643 2348999999999999999
Q ss_pred HHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcc
Q 008896 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (549)
Q Consensus 243 ~i~p~i~~~l~~~~-------gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~ 315 (549)
.+++++.+++.+.. ||.++|.++++++++++++++..++.+++.++.++++.+..++++.+.|++....++.
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~- 216 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH- 216 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence 99999999998543 6999999999999999999999999888888888989999999888887643211110
Q ss_pred cccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCcccCchhHHHHHHHHhhchhhhHHHHHHHHhhhh
Q 008896 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (549)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~ 395 (549)
.+.+|+|.++... .+++++++|++++++++++..+++|..+.|.
T Consensus 217 -----------------------~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 217 -----------------------WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred -----------------------cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0124556554331 2357889999999999999999999999999
Q ss_pred hhHHHHHHhhhccCC----------------------------------CCCCCCCchHHHHHHHHHHHHHHHHH
Q 008896 396 LTLSVQQAYTMNTHM----------------------------------GHPRGASQLQRVGIGLAVSILSVIWA 436 (549)
Q Consensus 396 ~t~~~~q~~~~~~~~----------------------------------~~~~~~~~l~~i~~G~~~~~~~~~~a 436 (549)
.+.+..|+..|+.++ +++..++.++|+++|+++++++++++
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va 335 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVA 335 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999888753 33345788999999999999999886
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.97 E-value=2.7e-28 Score=264.40 Aligned_cols=399 Identities=15% Similarity=0.197 Sum_probs=276.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
.++++.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+....+..++++|+++||++|||+++.++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999888888877788888999999995599999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
++.++.++++++. .+...+++++++.|+|.|...++..++++|++|+++.+
T Consensus 97 ~~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~-- 147 (500)
T PRK09584 97 VLAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR-- 147 (500)
T ss_pred HHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh--
Confidence 9999988877641 13455678889999999999999999999999876522
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc--CCCCChhhH------H
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR------V 296 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~------~ 296 (549)
|..+++++|++.++|+.+||.+++++.++.|||+.|++.++..+++++.+++.++.+++. ++++++... .
T Consensus 148 --~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
T PRK09584 148 --LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTI 225 (500)
T ss_pred --hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHH
Confidence 567889999999999999999999999999999999998877666666555544433322 222222211 1
Q ss_pred HHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCcccCchhHHHHHHHH
Q 008896 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 376 (549)
Q Consensus 297 ~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~ 376 (549)
..+......... +.+++ + .. +............... .+.+..++ +++++.+
T Consensus 226 ~~~~~~~~~~~~----------~~~~~--~--------~~-~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~ 276 (500)
T PRK09584 226 VGVVALIAIATW----------LLHNQ--E--------IA-RMALGVVALGIVVIFG-------KEAFAMKG-AARRKMI 276 (500)
T ss_pred HHHHHHHHHHHH----------HHhcc--h--------HH-HHHHHHHHHHHHHHHH-------HHHhhcCH-HHHHHHH
Confidence 111111111000 00000 0 00 0000000000000000 00011122 3455666
Q ss_pred hhchhhhHHHHHHHHhhhhhhHHHHHHhh-hccCC------------------------------CCCCCCCchHHHHHH
Q 008896 377 RLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------------------------------GHPRGASQLQRVGIG 425 (549)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~t~~~~q~~~-~~~~~------------------------------~~~~~~~~l~~i~~G 425 (549)
..+++++..++||..+.|.++.+..|+.. +|+++ +.+++.+..+++.+|
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 67778889999999999999998877643 33322 334456678899999
Q ss_pred HHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHH
Q 008896 426 LAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 471 (549)
Q Consensus 426 ~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~ 471 (549)
+++.+++++.. ..++++++.+|+++||+++|++++...+|+.++..
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887662 46677889999999999999999999999999888
Q ss_pred HHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 008896 472 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 531 (549)
Q Consensus 472 l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~ 531 (549)
+.+.+.. . ....+.. ...+.+..+|..+++++++..++++...++.++..+.
T Consensus 437 ~~~~~~~-~---~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~ 488 (500)
T PRK09584 437 VANLMAV-P---DNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQD 488 (500)
T ss_pred HHHHhcc-c---cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8765421 0 0000000 0112367788888888877777777777777665443
No 7
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.97 E-value=6.4e-28 Score=257.40 Aligned_cols=394 Identities=14% Similarity=0.175 Sum_probs=274.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++++.++.++..++.+++++|++...++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++.... .+...++++..+.++|.|...++..++++|++|+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 999887665421 11233455666677888888899999999999987432
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccC-CCCChhhH--HHH----
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTR--VAQ---- 298 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~--~~~---- 298 (549)
|.++++++|...|+|+.++|.+++++.+..||+++|+++++.++++++.++..++.+.+.. ...+|..+ ...
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 8999999999999999999999999999999999999988877777777766655543321 11112111 000
Q ss_pred -HHHH-----HHHhhccccCCcccccccccCCCcccccCCcccccCCccchh-hHhh---hhhccccCCCCCCcccCchh
Q 008896 299 -VLVA-----AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAA---LELKEDVINPSPWKLCTVTQ 368 (549)
Q Consensus 299 -v~~~-----a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~---~~~~~~~~~~~~~~~~~~~~ 368 (549)
+... ...... .++ .....+ -... ...-- +......+
T Consensus 215 ~~~~~~~~~~~~~~~~-----------~~~----------------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 260 (493)
T PRK15462 215 WLLVLLVATPALITVL-----------FWK----------------EWSVYALIVATIIGLGVLA-------KIYRKAEN 260 (493)
T ss_pred HHHHHHHHHHHHHHHH-----------HHH----------------HHHHHHHHHHHHHHHHHHH-------HHHHhcCC
Confidence 0000 000000 000 000000 0000 00000 00000112
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHH-hhhccCC---------------------------------CCCC
Q 008896 369 VEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA-YTMNTHM---------------------------------GHPR 414 (549)
Q Consensus 369 ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~-~~~~~~~---------------------------------~~~~ 414 (549)
.+|+|++...+++++..++||..+.|.++.+...+ .++|+++ ++++
T Consensus 261 ~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~ 340 (493)
T PRK15462 261 QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR 340 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36788999999999999999999999998777655 3567654 3455
Q ss_pred CCCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHH
Q 008896 415 GASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAAL 460 (549)
Q Consensus 415 ~~~~l~~i~~G~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~ 460 (549)
.++...|+++|++++++++++. ..++++.+.+|++.+|+.||+++.
T Consensus 341 ~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 341 TVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 7889999999999999887654 566777899999999999999988
Q ss_pred Hh-HHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHH--HHHHHhhhhccccccc
Q 008896 461 AG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN--FCAFLYSAYRYKYRSE 530 (549)
Q Consensus 461 ~~-~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~--~~~~~~~~~~~~~~~~ 530 (549)
.. .+|+.++..+.+.....+. ..+.. . +-+..++..+|..++.+.++. ++.+.+..+..|.|.+
T Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~--~~~~~---~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 421 LSGAIANYLAGVIADQTSQASF--DASGA---I-NYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred HHHHHHHHHHHHHHHHhccccC--Ccccc---c-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 54 7999988888776632111 00000 0 000123566777777666555 3444444444454443
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.91 E-value=7.3e-23 Score=228.33 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=141.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|..+..+.+..++..+.. .+...+.+++..++|++..+.+++.+.+.++.+++.+++|+++||+ |||+++++++++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~-~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEV-FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 3444444444444444433 2345566788889999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.++++++ .+.+.++++|++.|+|.|+..++...+++|.+|++.
T Consensus 243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------ 288 (742)
T TIGR01299 243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------ 288 (742)
T ss_pred HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9888887765 467889999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~-------------~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|+..++++.....+|.++++.++.++... .+||+.|++.++..++.+++.++
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887666543 36899888877765555544433
No 9
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.90 E-value=1.2e-21 Score=213.14 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=135.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
.+++.+..+.+..+...+....+... .+.+..+ .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~ 90 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLV-TKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYG 90 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence 34445555566666666655433333 3334432 234556678899999999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.+++.++.++++++.. ..+ ..+...++++|++.|++.|+..+..+.+++|.+|++.
T Consensus 91 ~~~~~~~v~~~~~~~~~~---~~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~ 148 (502)
T TIGR00887 91 MELIIMIIATVASGLSPG---SSP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW 148 (502)
T ss_pred HHHHHHHHHHHHHHHccC---ccc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh
Confidence 999999998887776411 000 0236789999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------ccchHHHHHHHHHHHHHHHHH
Q 008896 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-----------------------~~gw~~~f~i~~~~~~i~~~~ 275 (549)
|+++.++++....+|..+++.++.++.. ..+||+.|.+.++..++..++
T Consensus 149 ------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 149 ------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765532 237999998776655544443
No 10
>PRK03545 putative arabinose transporter; Provisional
Probab=99.90 E-value=1.8e-20 Score=197.01 Aligned_cols=177 Identities=13% Similarity=0.120 Sum_probs=148.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++|...+.+.+..++.....+.. ..+.+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVP-VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHH-HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 35655666666666544444432 3334677889999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.++.+.+.++ .+.+.++++|++.|++.+...+...+++.|++|+++
T Consensus 84 ~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~----- 130 (390)
T PRK03545 84 FIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK----- 130 (390)
T ss_pred HHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence 99998888776 568889999999999999888999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..++.+.
T Consensus 131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999899999999887766555444333
No 11
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.89 E-value=1.5e-21 Score=210.50 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
.+.++...+..+...+....+.. ..+.+++.+ +.+..+.+++.+.+.++..++.+++|+++||+ |||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISG-TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehH-hHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 34445555555555444432333 334455555 88889999999999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
+++.+++.++.++++++........ .++......++++|++.|++.|+..+...++++|++|++
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIG----------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH 152 (479)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc----------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence 9999999888877765311000000 001134567889999999999999999999999999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHHHHHHHH
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+ |++.++++..+..+|..+++.++..+. +..|||+.|++.++..++..+..+
T Consensus 153 ~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 153 I------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred h------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999999987766553 356899999987766665544433
No 12
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.89 E-value=2e-20 Score=197.45 Aligned_cols=177 Identities=17% Similarity=0.169 Sum_probs=151.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
.+++|.......+..+++.+..+..... .+.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 87 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVA-APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSV 87 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHH
Confidence 3467777778888888888888665554 4566788999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
++..++.+++.++ .+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--- 136 (406)
T PRK11551 88 ALFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL--- 136 (406)
T ss_pred HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH---
Confidence 8888887776664 467788999999999999999999999999999888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
|++++++++.+..+|..+++.+++.+.+..+|++.|++.+++.++..++.
T Consensus 137 ---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 137 ---RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999988776555444433
No 13
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.89 E-value=1.6e-20 Score=200.46 Aligned_cols=169 Identities=11% Similarity=0.033 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+..++..++..+..+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence 3444455555555555555555554 44567999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.++++++ .+.+.+++.|++.|++.|...+....++.|++|+++ |+
T Consensus 101 ~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg 146 (434)
T PRK11663 101 INILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG 146 (434)
T ss_pred HHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence 88887765 467788889999999999888999999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
+.+++++.+.++|..++|.+++++.+..|||+.|++.++..++..
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776554443
No 14
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.89 E-value=6.8e-20 Score=187.87 Aligned_cols=183 Identities=13% Similarity=0.147 Sum_probs=165.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
..+..|..++.+.+..|+...+-+.... +.+-+.+++|.+..++++.++.|..+..++.++...++||+ .||++++..
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~ 84 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGL 84 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHH
Confidence 3445577888888888888888775554 56778899999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
+.+++++.++++++ +|+..++++|++.|+..|.+.+...+..+++.|+++
T Consensus 85 l~lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~-- 134 (394)
T COG2814 85 LALFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK-- 134 (394)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc--
Confidence 99999999999998 689999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
|++++++...+..+...+|..++.++.+.+|||+.|++.+...++.++..+...|
T Consensus 135 ----~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 ----RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ----hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988887777777666555
No 15
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.88 E-value=8.1e-20 Score=192.45 Aligned_cols=177 Identities=10% Similarity=-0.047 Sum_probs=149.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.++.+..+.+..++..++.......++.|+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC 91 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence 345677788888888888877778888899999999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+.+.++...... + ..+...+++.|++.|++.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------ 145 (399)
T PRK05122 92 ALSGLLYLLAGLLAAW-P-------------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------ 145 (399)
T ss_pred HHHHHHHHHhhhhhcc-c-------------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------
Confidence 8877666554221000 0 0246678999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
|++.++++..+..+|..++|.+++++.+..||++.+++..+..+
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877655443
No 16
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.88 E-value=7.2e-20 Score=190.95 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
...+..+.+.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++..+......+.+.....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~----------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP----------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 345556777889999999999999999999999999999999997 99998766555444443211111
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+...++++|++.|+|.+. ..+.....+|.+|+++ |++++++.+.+..+|..+++.
T Consensus 77 -----------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~ 132 (368)
T TIGR00903 77 -----------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA 132 (368)
T ss_pred -----------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999986 4555566699999887 999999999999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++++.+..|||+.|++.++..++..+++++
T Consensus 133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877665555544444
No 17
>PRK12382 putative transporter; Provisional
Probab=99.87 E-value=1e-19 Score=191.25 Aligned_cols=172 Identities=13% Similarity=0.033 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++..++.....+.++.|+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 455566666777777766677788899999999999999999999999999999999999997 9999999998877776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+....+.. ...+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVS--------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 5544332111100 00467888999999999999888888899999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
+++++..+.++|..++|.+++++.+..||++.+.+..+.
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999999999999889999877655443
No 18
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.87 E-value=9.7e-20 Score=193.09 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=152.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+|+..+.+++..++..+....+.. +.+++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence 4577777777777777777755544 45689999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.++.++++++ .+...++++|++.|++.++..+....+++|.+|+++
T Consensus 83 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----- 129 (412)
T TIGR02332 83 WGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----- 129 (412)
T ss_pred HHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH-----
Confidence 99999888876 467889999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~------~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.+++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++.++.
T Consensus 130 -rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 130 -RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998864 3699999998777665554444443
No 19
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.87 E-value=1.7e-19 Score=191.45 Aligned_cols=173 Identities=19% Similarity=0.154 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.++...++..++.......++.+ .++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHH
Confidence 34444556666654444444444 567788999999999999999999999999999997 9999999988877777666
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+.+.... .. .+.+.+++.+++.|++.+...++..+.+.|.+|+++ |+++.+
T Consensus 99 ~~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 149 (417)
T PRK10489 99 LALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGA 149 (417)
T ss_pred HHHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHH
Confidence 5432110 00 356778889999999988888888999999999887 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
+.+...++|..+||.+++++.+..||+|.|++.++..++..++.
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988899999988776655554443
No 20
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.87 E-value=1.8e-19 Score=189.85 Aligned_cols=150 Identities=12% Similarity=0.120 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008896 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (549)
Q Consensus 86 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~ 165 (549)
+.+.. +.+.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..++.++.++++++
T Consensus 26 ~~~~~-~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a--------- 94 (393)
T PRK09705 26 TSVGP-LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY--------- 94 (393)
T ss_pred hccch-hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---------
Confidence 34444 45667889999999999999999999999999999999997 99999999999999999999886
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
++...++++|++.|+|.+...+.....+.|.+| ++ |+++++++..+.++|..++
T Consensus 95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999987 66 8999999999999999999
Q ss_pred HHHHHHHhhcc-chHHHHHHHHHHHHHH
Q 008896 246 FTLVVYIQMEH-GWGSAFGALAIAMGIS 272 (549)
Q Consensus 246 p~i~~~l~~~~-gw~~~f~i~~~~~~i~ 272 (549)
+.+++++.++. +||+.+.+.++..++.
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999988775 8999876655443333
No 21
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.87 E-value=1.9e-19 Score=190.15 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+.++...++..++.+.+.+.++.|+++++|++..+.+++.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5667888889999989999999999999999999999999999999999999999999997 999999999999999888
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++... .+.+.+++++++.|++.+...+...+++.|.+|+++ |++++
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 87764 467778899999999999888999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
++.+...++|..+||.+++++. ..||++.|++.++..++..++.
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 6799999998776655554443
No 22
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.87 E-value=2.1e-19 Score=186.91 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 4455678899999999999999999999999999999999997 99999999999999888888775
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+.+.++++|++.|++.+...+....+++|.+|+++ |++.++++....++|..++|.++
T Consensus 80 ---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 138 (399)
T TIGR00893 80 ---------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLV 138 (399)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHH
Confidence 467889999999999999999999999999999888 99999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++.+..+|++.|++.++..++..++.++
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 139 GWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999877766655554443
No 23
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2e-20 Score=197.28 Aligned_cols=345 Identities=15% Similarity=0.075 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhH
Q 008896 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (549)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (549)
+.++++|.+|.++|.+++|+++|++ |||..++++.++.+++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 4578889999999999999999997 99999999999998888887776331 467
Q ss_pred HHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHh-hccchHHHHHHH
Q 008896 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYIQ-MEHGWGSAFGAL 265 (549)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~-~~l~-~~~gw~~~f~i~ 265 (549)
.+++++|++.|+..|......+.++.|..|.+- ||..-.+..++..+|-.++..++ ..+. ....|++.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 889999999999999999999999999999999 99999999999999999996655 3443 445699998888
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccc-cCCCcccccCCcccccCCccchh
Q 008896 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRCL 344 (549)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l 344 (549)
.+...+.+++..+ +||||+| |+. +++.++|++..++.+..++..-.
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 8877777666554 6999999 887 67778888887776655432221
Q ss_pred hHh--hhhhcccc---CCCCCCcccCchhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccC--------C-
Q 008896 345 DKA--ALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH--------M- 410 (549)
Q Consensus 345 ~~a--~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~--------~- 410 (549)
+++ .+...++. .+...|.++.... .++.....+.+.+++++-.......+++......++... .
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g 315 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNPT--LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG 315 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCcc--hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 11111111 1111111111111 111222222233333322222111222221111111110 0
Q ss_pred ---------------CCCCCCCchHHHHHHHHHHHHHHHHH--------------------------------HHHHHHH
Q 008896 411 ---------------GHPRGASQLQRVGIGLAVSILSVIWA--------------------------------GLLEFLY 443 (549)
Q Consensus 411 ---------------~~~~~~~~l~~i~~G~~~~~~~~~~a--------------------------------~~~~~~~ 443 (549)
+.+|++-.+.- ..++.+..+.+... -.+-+..
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~-~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~a 394 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLIS-LSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGA 394 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHH
Confidence 34433322111 11111111111000 2233446
Q ss_pred hhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008896 444 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 523 (549)
Q Consensus 444 ~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~ 523 (549)
|++|.+.|+.++++..+.+++.+++.....+.+.+..| .++|.++++.+++..+..+...+
T Consensus 395 ELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------------------~~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 395 ELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------------------PYVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------chhhHHHHHHHHHHHHHHHHhCc
Confidence 89999999999999999999999999999999988776 37888899999999999999999
Q ss_pred ccccccccCCCCchhh
Q 008896 524 RYKYRSEQKHGNDYEV 539 (549)
Q Consensus 524 ~~~~~~~~~~~~~~~~ 539 (549)
++|+|+..|+.++.++
T Consensus 456 ETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 456 ETKGRTPYEIIEELEK 471 (485)
T ss_pred ccCCCCHHHHHHHHHh
Confidence 9999987665554443
No 24
>PRK10054 putative transporter; Provisional
Probab=99.86 E-value=4.1e-19 Score=187.25 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=151.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.+|..+.+.+..++...+.+.+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 445677888889999999988899999999999999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++.++ .+.+.+++++.+.+.+.+...++..+..+|.+|+++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (395)
T PRK10054 84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------ 129 (395)
T ss_pred HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence 8888777665 456667777888888777778888999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
|++.+++.+...++|..++|.+++++.+ .||++.|++.++..++.+++..
T Consensus 130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 7899999988777666554433
No 25
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.86 E-value=5.9e-19 Score=191.56 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=153.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|..+..+.+..++..+....+... .+.+.+++|.+..+.+++.+.|.++...+.+++|+++||+ |||+++.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a-~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA-APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 5667778888888888888666555 4556789999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC-CCCChhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKT 225 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~-~~~~~~~~~ 225 (549)
.++.++++++ .+.+.++++|+++|+|.++..+.....+.+.+ |+++
T Consensus 82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~----- 128 (495)
T PRK14995 82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ----- 128 (495)
T ss_pred HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence 9999998876 57888999999999999998888888887777 4555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
|+++++++.....+|..+||.+++++.++.||||.|++.....++.+++.+...++
T Consensus 129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998776655555544444443
No 26
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.86 E-value=7.5e-19 Score=185.70 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+.+.+++..++...+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++..+..++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~ 91 (406)
T PRK15402 14 FPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILT 91 (406)
T ss_pred HHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence 333334444444444444444444 45688999999999999999999999999999999997 9999999999888888
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+ .+.+.+++.|++.|++.+...+...+.+.|.+|+++ |.+
T Consensus 92 ~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~ 137 (406)
T PRK15402 92 CLAILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIK 137 (406)
T ss_pred HHHHHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHH
Confidence 8877665 456778899999999999888888999999999887 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+++......+|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus 138 ~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 138 ITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999899999998877776665554433
No 27
>PRK10504 putative transporter; Provisional
Probab=99.86 E-value=1e-18 Score=188.35 Aligned_cols=178 Identities=12% Similarity=0.037 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
.+.++.+.+..++..+..+.+...++.|. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 34677788888888888887777776665 57999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.++ .+...++++|++.|++.++..+.....+.|.+|+++ |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 888776654 456778899999999999999999999999999877 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++.++++....++|..++|.+++++.+..|||+.|++......+..++.....+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999877665555554444433
No 28
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.86 E-value=1.5e-19 Score=192.10 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=145.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+|+......+..+...+..+.. .++.+++.+++|.++.+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 44556666666677766766544 4556778899999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++.++ .+...++++|++.|++.+...+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~----- 139 (426)
T PRK12307 93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL----- 139 (426)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence 99998887776 567889999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
|+++.+++..+..+|..+++.+.+++.+..|||+.|++..+.
T Consensus 140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999999998889999999875443
No 29
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.86 E-value=1.2e-18 Score=188.94 Aligned_cols=175 Identities=18% Similarity=0.133 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHH-----HHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-a~~-----~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i 141 (549)
++..+...+..+++.+.+. +.....+++.++++.+..+ ..+ +.++..++..++.++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4556666778888888775 4556677888888643321 111 24666788899999999999997 99999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCCh
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (549)
+++++.++.++++++.+...+.. .....++++|+++|+|.|+..+...++++|.+|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g~--------------------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIGI--------------------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHHH--------------------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 99999999999988622100000 011247899999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHH
Q 008896 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (549)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~ 270 (549)
|+...++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999999988888888888876655443 25799999998665433
No 30
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.85 E-value=4.8e-19 Score=185.91 Aligned_cols=174 Identities=13% Similarity=0.212 Sum_probs=151.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
.++.+|+......+..+...+..+.+.. ..+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 4567788888888888888888865544 45677889999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.++..++.+++.++ .+...++++|++.|++.++..+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 99888888877765 467788999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGIS 272 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~i~~~~~~i~ 272 (549)
|++.+++++.+..+|..+++.+++.+.+..+ ||+.|++.++..++.
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766 999998765544443
No 31
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.85 E-value=1.8e-18 Score=182.37 Aligned_cols=172 Identities=12% Similarity=-0.010 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-----a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
....+++..++..++++.....++.|+ +++|.+..+ .+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence 455556677777888777777777777 468888654 37788889999999999999999997 99999999998
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++... .+.+.+++.|++.|++.+ ..+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---- 139 (408)
T PRK09874 93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---- 139 (408)
T ss_pred HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence 888887776654 467788899999999755 45777788899999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++..++++.+..+|..++|.+++++.+..+|++.|++.++..++..++.+.
T Consensus 140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999899999999887766655554443
No 32
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.85 E-value=1.2e-19 Score=193.98 Aligned_cols=155 Identities=18% Similarity=0.279 Sum_probs=129.3
Q ss_pred HHHHHHHhcCCC--------hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 92 MVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 92 l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
..+.+..+++.+ ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++.+++.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~----- 123 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF----- 123 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 344555566666 88999999999999999999999999997 9999999999999998888765421
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (549)
..+.+.++++|++.|+|.+...+...++++|.+|+++ |++.+++++.+.++|..
T Consensus 124 --------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~ 177 (481)
T TIGR00879 124 --------------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGIL 177 (481)
T ss_pred --------------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHH
Confidence 0345678999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHH---HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 244 VAFTLV---VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 244 i~p~i~---~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++.++ ..+.+..|||+.|++.++..++.++..++
T Consensus 178 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 66667789999999866655544444333
No 33
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.85 E-value=2.6e-19 Score=192.95 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=130.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
.+.+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.++++.....
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~----------- 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS----------- 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 345677889999999999999999999999999999999997 99999999988887777666543110
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
...+...+++.|++.|++.+...+....+++|++|+++ |+++++++..+.++|+.+++.+..
T Consensus 118 ------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 118 ------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred ------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHH
Confidence 00468889999999999999999999999999999999 999999999999999999999988
Q ss_pred HHhhcc---chHHHHHHHHHHHHHHHHHHHh
Q 008896 251 YIQMEH---GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 251 ~l~~~~---gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.... +|+..|.+.++..++..++.++
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 776643 5888888766655544443333
No 34
>PRK09952 shikimate transporter; Provisional
Probab=99.85 E-value=2.9e-18 Score=183.32 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=132.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHH-----HHHHHHHHHHHhHHHHHhhhccchH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRY 136 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~s~~~a~~~~-----~~~~~~~~~~~l~~G~lsD~~~GR~ 136 (549)
...+|+..+..++..+++.+....+....+.++.+++ +.++.+ +++. .+..++..++.++.|+++||+ |||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr 94 (438)
T PRK09952 17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRK 94 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccH
Confidence 3445666777777888888877655444555666665 666653 3332 223345667888899999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC
Q 008896 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 137 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
+++.++.+++.++.++++++....... -.....++++|+++|++.|+..+....++.|.+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 154 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA 154 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence 999999999999999888762210000 011235888999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHH
Q 008896 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~ 270 (549)
|+++ |+...+....+..+|..++..+..++. ..+|||+.|++.++..+
T Consensus 155 p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 155 PKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred CCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 9988 999999888888899888887776654 25799999988766543
No 35
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.85 E-value=5.2e-19 Score=189.91 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=125.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccc
Q 008896 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (549)
Q Consensus 93 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (549)
.+.+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---------------- 104 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS---------------- 104 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence 4566789999999999999999998899999999999997 99999999998888888887665
Q ss_pred ccccCCCCCcchhhHHHHHH-HHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008896 173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~ 251 (549)
.+.+.+++ .|++.|++.+...+...+++.|.++ ++ |+++.++.+.+..+|..++|.++++
T Consensus 105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555544 4688899988766666778888885 56 9999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 252 IQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 252 l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
+.+..|||++|++.++..++..+..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887766555444443
No 36
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.84 E-value=6.7e-18 Score=177.95 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=149.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
.++..|+....+....++.....|.....++. +.+++|+++.+.++..+.+.++..++.++.|+++||+ |||+++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 34456776666666666666666555555544 5678999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.+++.++.+++.++ .+.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-- 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT-- 141 (394)
T ss_pred HHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--
Confidence 99999988887765 468889999999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
|+++++++..+.++|..++|.+++++.+..|||+.|++.++..++..
T Consensus 142 ----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 ----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998766554443
No 37
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.84 E-value=6e-21 Score=199.56 Aligned_cols=268 Identities=34% Similarity=0.512 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhccc
Q 008896 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (549)
Q Consensus 136 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (549)
+|+++++.+++++|.+++++++..+... ++.+...++++++++++|.|+.+|++.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 5899999999999999988876543321 224567899999999999999999999999999
Q ss_pred CCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc-CCCCChhh
Q 008896 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (549)
Q Consensus 216 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~ 294 (549)
+++++ ...|.++|+++|++.|+|+.+++.+.++++++.||.++|+++++.+++++++++..++.+++. ++.++++.
T Consensus 62 ~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 99874 234999999999999999999999999999999999999999999999999999999999888 77788877
Q ss_pred H-HHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCc-ccCchhHHHH
Q 008896 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 372 (549)
Q Consensus 295 ~-~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~ve~~ 372 (549)
+ ...++..+.+++....|....+ +.+.....+ .. .......... +........ ..|. .|+.+++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-----~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS-ER-----SIFGIIVFIR-AAVIFFPEI---FFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC-CC-----CCCCCCCHHH-HHHHHCCCH---HHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh-hh-----hhhhhhhhcc-chhhhhhhh---hhcccCCccceeeee
Confidence 7 5566666667766655433332 221110000 00 0000001111 111111000 0111 1567788999
Q ss_pred HHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccCC----------------------------------CCCCCCCc
Q 008896 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRGASQ 418 (549)
Q Consensus 373 k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~~----------------------------------~~~~~~~~ 418 (549)
|.+.+.++.+.+.++++..+.+..++...|...+|+.+ +++..++.
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~ 287 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP 287 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence 99999999999999999999999998888887775433 55567889
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 008896 419 LQRVGIGLAVSILSVIWA 436 (549)
Q Consensus 419 l~~i~~G~~~~~~~~~~a 436 (549)
..|+++|++++.++++++
T Consensus 288 ~~k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVA 305 (372)
T ss_dssp HHHHHHH-HHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 999999999988888775
No 38
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.84 E-value=1.6e-18 Score=178.93 Aligned_cols=173 Identities=17% Similarity=0.080 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
++...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 456666666766555566666654 6899999999999999999999999999999997 99999999998888887777
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
.+.... + +.+.+.++++|++.|++.+...+...++++|.+|+++ |++.+++
T Consensus 82 ~~~~~~----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALL----G-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHc----C-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 665210 0 0267889999999999999999999999999999887 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
++.+..+|..++|.+++++.+..||++.|++.++..++..++.+
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887776555544433
No 39
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.84 E-value=5.1e-19 Score=190.44 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=128.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 008896 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
+++++..+.+.+.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999997 9999999999888888777654311
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 008896 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-g 257 (549)
.+...+++.|++.|++.+...+....+++|++|+++ |++++++++.+..+|..++|.+++++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 245678899999999999999999999999999988 999999999999999999999999999884 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 008896 258 WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 258 w~~~f~i~~~~~~i~~~~~~~ 278 (549)
||+.|++.++..++..++++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHH
Confidence 999999887766555544443
No 40
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.84 E-value=4.3e-18 Score=181.57 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=131.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHH---HHHHHHHhHHHHHhhhccchHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFL---GISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~s~~~a~~~~~~~~---~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
++..+....+..+++.+.+.. ...+.+++.++++ .+..+.+.....+. ++..++.+++|+++||+ |||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 344455555667777777754 5667788888885 45554444344443 44458999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.+++.++.++++++....... -.....++++|+++|++.|+..+...++++|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 99999999999887752110000 0134568899999999999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHH
Q 008896 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~i 271 (549)
|+++.++.+.+.+.|..+++.+...+. ..+|||+.|++.++..++
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 999999988888888888887665543 257999999887665544
No 41
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.84 E-value=7.5e-18 Score=180.84 Aligned_cols=156 Identities=11% Similarity=0.069 Sum_probs=125.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
...+|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+.+++....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 445678877 99999999999999999999999999999997 99999999999988888877764110
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-i~p~i~ 249 (549)
..+...+++.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|+. ++|+++
T Consensus 117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0256678888999999999988888888999999888 99999999999999875 455544
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
..+....|||+.|++.++..++..++.++
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444459999999877665554444333
No 42
>TIGR00898 2A0119 cation transport protein.
Probab=99.84 E-value=1.1e-19 Score=197.59 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=128.9
Q ss_pred HHHHHhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 94 ~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
+.+.+++|++ ..+.++..+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 4567789998 88999999999999999999999999997 99999999999999888887765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
.+.+.++++|++.|++.++..+....+++|.+|+++ |+...+++..+..+|..++|.++.
T Consensus 178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999988 999999998899999999998877
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 251 ~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+.+ ||+.|++.++..++..+..++
T Consensus 238 ~~~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 238 FIPD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 6654 999999887766655555433
No 43
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.84 E-value=7.7e-18 Score=175.79 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=147.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+++..+.+.+..++..++.....+ ..+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLP-AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 344455555555555555544444 44567889999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 8888887765 467788999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.+++.+....+|..++|.+++++.+..||++.|++.++..++..++.++.
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988777666555544443
No 44
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.83 E-value=1.5e-17 Score=176.36 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=132.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
+.+.+++|.+..+.++.++++.++..++.+++|+++||+ |||+++.++..++.++.+++.++
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a----------------- 101 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT----------------- 101 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-----------------
Confidence 457889999999999999999999999999999999997 99999999999999988888765
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.+...++++|+++|++.+...+.....+.|.+|+++ |++.++++.....+|..+||.+++++.
T Consensus 102 -----------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 102 -----------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988766777788899999888 899999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHh
Q 008896 254 MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 254 ~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..|||+.|++.++..++..++.++
T Consensus 165 ~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 165 HFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999887776666554433
No 45
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.83 E-value=2.4e-18 Score=178.31 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~------------- 88 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA------------- 88 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH-------------
Confidence 4467888899999999999999999999999999999999997 99999999999999999888876
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+.+.++++|++.|++.+...+.......+.+| ++ |++..+++..+..+|..+++.+.
T Consensus 89 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 146 (377)
T TIGR00890 89 ---------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI 146 (377)
T ss_pred ---------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence 578889999999999999888888888888886 45 89999999999999988877777
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.+.+..|||+.|++.++..++..+..+.
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 147 TSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777889999999887766655544433
No 46
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.83 E-value=5.2e-18 Score=183.95 Aligned_cols=168 Identities=14% Similarity=0.212 Sum_probs=146.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+.+|+.+..+.+..++..+..+.+ ..+.+++.+++|++..+.++..+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 456677777777777777777544 4456778889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.++ .+.+.++++|++.|++.++..+....++.|.+|+++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 999988887765 467889999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
|++.+++++.+.++|..++|.+.+++.+..|||+.|++.++.
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875443
No 47
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1.1e-18 Score=176.92 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLS---VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++...++...++|.+. ....+++.++.++|.+|.+.+.+.+.+.+.++-.+.|.+|||. +.|+.+.+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 445666677777777653 3466889999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
..+++.++ .+...+.+..++.|++.|.-.|.....++.+|++++ ||
T Consensus 107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG 152 (448)
T COG2271 107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG 152 (448)
T ss_pred HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence 99999887 567888889999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~--~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
+..++++.+-|+|+++.|.+. +++..+.+||.+|++++++.++..++.++.
T Consensus 153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999998876666555543
No 48
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.83 E-value=8e-19 Score=191.32 Aligned_cols=360 Identities=15% Similarity=0.170 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHhc-----CCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 008896 87 GLSVNMVTFMFYVM-----HKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 87 ~~~~~l~~yl~~~l-----~~s~--~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~ 159 (549)
+..+.+..++.+.. ..+. .+.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++++
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a--- 139 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA--- 139 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh---
Confidence 45555555555432 1222 2347999999999999999999999987 99999999999999999999987
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHH
Q 008896 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+..+++++|++.|+|.|+.....+.+++|..|++. |+...+.+++...
T Consensus 140 -------------------------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~ 188 (513)
T KOG0254|consen 140 -------------------------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFIT 188 (513)
T ss_pred -------------------------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccc
Q 008896 240 VGAIVAFTLVVYIQME--HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI 317 (549)
Q Consensus 240 ig~~i~p~i~~~l~~~--~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~ 317 (549)
+|..++.. .++...+ .+||..+++..+..++..+.+++ .||+|+|
T Consensus 189 ~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~--------------------------------~pesp~~ 235 (513)
T KOG0254|consen 189 IGILLGYC-INYGTSKVYAGWRIPLGLALIPAVILALGMLF--------------------------------LPESPRW 235 (513)
T ss_pred HHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHHHHh--------------------------------CCCChHH
Confidence 99998844 4444444 48998888877766665555333 3566666
Q ss_pred cccccCCCcccccCCcccccC--Cc-cchhhHhhhhhcccc---CCCCCCcccCchhHHHHHHHHhhchhhhHHHHHHHH
Q 008896 318 GLYEVPGKHSAIKGSGKIAHT--DD-FRCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI 391 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~--~~-~~~l~~a~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~~~ 391 (549)
+.++++.+++.+...++... .+ ...++........+. ..+..|+.+.. -...|+....+.+..+++.....
T Consensus 236 -L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~ 312 (513)
T KOG0254|consen 236 -LIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGIN 312 (513)
T ss_pred -HHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCc
Confidence 66655555554444433331 11 111111110000000 00111221111 11233333334444444432222
Q ss_pred hhhhhhHHHHHHhhhccC-C----------------------CCCCCCCch---HHHHHHHHHHHHHHHH----------
Q 008896 392 LTEFLTLSVQQAYTMNTH-M----------------------GHPRGASQL---QRVGIGLAVSILSVIW---------- 435 (549)
Q Consensus 392 ~~~~~t~~~~q~~~~~~~-~----------------------~~~~~~~~l---~~i~~G~~~~~~~~~~---------- 435 (549)
....++....+....+.. . |.+|++-.+ ..+.+++++.++....
T Consensus 313 ~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
T KOG0254|consen 313 YVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKG 392 (513)
T ss_pred eEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 111111111222111111 0 222221111 1111222211111100
Q ss_pred -----------------H--H--HHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCC
Q 008896 436 -----------------A--G--LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 494 (549)
Q Consensus 436 -----------------a--~--~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~ 494 (549)
. + .+-...|.+|.+.|+.+.++....+++.+++-...........+
T Consensus 393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~------------- 459 (513)
T KOG0254|consen 393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG------------- 459 (513)
T ss_pred hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 0 2 22244688999999999999999999999887776666543110
Q ss_pred CcccchhHHHHHHHHHHHHHHH-HHHhhhhccccccccCCCC
Q 008896 495 INTGRFDYLYWLLAVLSVINFC-AFLYSAYRYKYRSEQKHGN 535 (549)
Q Consensus 495 ~n~~~~~~~f~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 535 (549)
....|+++++++.+..+ +++++.+++|+++.+|.++
T Consensus 460 -----~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 460 -----IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred -----ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 12456677777777777 7888999999998876543
No 49
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.83 E-value=1.6e-17 Score=174.21 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++.+.+..++..+..+...+.+ +.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 356667777777777776666654 556789999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.++++++ .+.+.+++.|++.|++.+...+....++.|.+++++ |+
T Consensus 81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (382)
T PRK10091 81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT 126 (382)
T ss_pred HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence 99888776 568889999999999999988888889999998877 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+.++++..+..+|..++|.+++++.+..|||+.|++.++..++..+..+
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999989999999988776555444333
No 50
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.82 E-value=7.9e-19 Score=186.86 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=135.4
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 008896 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
++++++.+-+++.+.+..|+.++.+.+|+++||+ |-|+++.++.++..+++++.++++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6788999999999999999999999999999997 9999999999999999999998854
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q 008896 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~-~g 257 (549)
.+...+++.|+++|++.|...|++..+.+.+.|+.| |+++.++.+.+..+|..++-.++|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 344567999999999999999999999999999999 99999999999999999999999999988 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 008896 258 WGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 258 w~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.|++.++..++..+++++.
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877776666553
No 51
>PRK03699 putative transporter; Provisional
Probab=99.82 E-value=2e-17 Score=174.18 Aligned_cols=175 Identities=7% Similarity=0.054 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
.+||+..+...+..++.....+.+...+ +.+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 4566777777777777766665554444 556789999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.++ .+...++++|++.|++.+...+...+.+.|.+|+++
T Consensus 81 ~~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---- 128 (394)
T PRK03699 81 LMILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---- 128 (394)
T ss_pred HHHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence 988888887765 467788999999999999988899999999998877
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~~~~i~~~~ 275 (549)
|+..++..+....+|+.++|.+.+++.. ..|||+.|.+.++..++..++
T Consensus 129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9999988888888999999999888764 579999998877665544443
No 52
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.82 E-value=3.5e-17 Score=172.93 Aligned_cols=176 Identities=13% Similarity=0.055 Sum_probs=142.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
+-+-||.+....+..++..++.+....++++|+ +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++.++.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~ 85 (402)
T TIGR00897 8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGL 85 (402)
T ss_pred HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHH
Confidence 344566777888888888888777777788887 67899999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
++..++.+++.+... .. .+...+++.|++.|+|.+...+...+.+.+.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~-----~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~--- 138 (402)
T TIGR00897 86 LLWCVGHAAFIVFGL-----GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN--- 138 (402)
T ss_pred HHHHHHHHHHHHHhc-----cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---
Confidence 998888765532111 00 256677888999999988877777888889999888
Q ss_pred hhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 008896 224 KTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~-~i~p~i~~~l~~~~gw~~~f~i~~~~~~i 271 (549)
|++++++++.+.++|. .++|.+++++.+..||+..+|.......+
T Consensus 139 ---~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~ 184 (402)
T TIGR00897 139 ---LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLT 184 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 9999999999999996 58999999998888977666654443333
No 53
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.82 E-value=1.3e-17 Score=170.61 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.+.+..++..++.+......+.|. +++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 455666777777776666666665 56899999999999999999999999999999997 9999999999999999888
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+.+. .+...++++|++.|++.+...+...++..|.+|+++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 8765 467789999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.+....+|..++|.+++.+.+..+|++.|++.++..++..++..+
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888776666555443
No 54
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.82 E-value=2.2e-17 Score=171.77 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH-HHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI 153 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i-~~~l~~~g~~~~ 153 (549)
.+..++..++.....+.++.|+.+++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.+++ +..+..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456777778877888899999999999999999999999999999999999999997 98887655 455555565665
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH--H
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--F 231 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~--~ 231 (549)
+.+ .+.+.+++.|++.|.+.+...|...++..|..+++. |... .
T Consensus 82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~ 127 (375)
T TIGR00899 82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS 127 (375)
T ss_pred Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence 554 456677788888888877778888888888877655 5543 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.....++|..++|.+++++.+..|||+.|++.++..++..++.++
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999999999899999999887766655554444
No 55
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.82 E-value=2e-17 Score=173.48 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++.+++..++..++...+.+.++.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 46788888888888888777777777765 7899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+.++ .+.+.++++|++.|++.+...+...+.+.|..++++ |+
T Consensus 84 ~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 129 (381)
T PRK03633 84 GCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RG 129 (381)
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HH
Confidence 88887765 467888999999999999988888888888888777 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
+.++++..+.++|..+||.+++++.+..
T Consensus 130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 130 RLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999987654
No 56
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.81 E-value=1e-17 Score=180.89 Aligned_cols=176 Identities=16% Similarity=0.124 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+.+..++..+....+ ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 3455556666666666444 4456677889999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 126 (485)
T TIGR00711 81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR 126 (485)
T ss_pred HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence 8888765 467889999999999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++++++....+|..++|.+++++.++.|||+.|++.+...++..++.++..+
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999877666555554444433
No 57
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.81 E-value=4.9e-17 Score=175.65 Aligned_cols=175 Identities=15% Similarity=0.091 Sum_probs=133.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+++.+.......++..+..+.+. .+.+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 34455555555555555555444 345677889999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.++++++ .+...++++|++.|++.+... ....+++|++|+++
T Consensus 112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------ 156 (476)
T PLN00028 112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------ 156 (476)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------
Confidence 8888777665 356778889999999888654 34567899999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh----h-----ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~----~-----~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++++++.+...++|+.+++.+.+.+. + ..|||+.|++.++..++..++.++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988777777777766665443 2 248999999887766555444443
No 58
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.81 E-value=6.3e-17 Score=170.13 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
....+..+....+...... ..+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLV-GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence 3344555555555544444 45566788999999999999999999999999999999997 999999999999888888
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 84 ~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 129 (392)
T PRK10473 84 LCSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVL 129 (392)
T ss_pred HHHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 77664 356678889999999999988999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.+...++|..++|.+++++.+..||++.|++.++..++..++.+.
T Consensus 130 ~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 130 SLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999887766555554433
No 59
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.81 E-value=2.8e-18 Score=176.35 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~ 154 (549)
++..++..++...+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556667777766666665588999999999999999999999999999999999996 999999999999999855555
Q ss_pred HhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHH
Q 008896 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (549)
++ .+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 43 245589999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 235 ~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
+.+..+|..++|.+++++.+..|||+.|++.++..++..++.
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999999999999988999999999888877776643
No 60
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.80 E-value=6.6e-17 Score=170.08 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.+|..+...+..++..+..+...+. .+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~-~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPA-IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 4566666666666666666544443 4566789999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..+ .+...+++.|++.|++.+...+....+..|.++.++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 84 ILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 8888777654 457788999999999998887888888899888777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
|+...+++..+..++..++|.+++++.+..|||+.|++.++..++..++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999988999999998776655444433
No 61
>TIGR00895 2A0115 benzoate transport.
Probab=99.80 E-value=4.5e-17 Score=170.21 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=145.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+.+|+.....++..+...+..+ ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence 3445555555555665555554 334456677788999999999999999999999999999999997 99999999998
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+. .+...+++.+++.|++.+...+...++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 138 (398)
T TIGR00895 91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---- 138 (398)
T ss_pred HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence 888887777654 456778899999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
|++.++++..+..+|..+++.+++++.+..||++.|++.++...+..++.+
T Consensus 139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654444443333
No 62
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.80 E-value=9.9e-17 Score=168.93 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchHHHHH-HHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~~~~l~~G~lsD~~~GR~~~~~-i~~~l~~ 147 (549)
..+..++..++..++...+.+.++.|+.+++|.+.++.+++.+.+ ..+..++++++|+ +||+ ||||.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 455667778888888877888899999999999999999987655 5566777777777 9997 9988754 5555545
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++..+++++ .+...+++.+.+.+...+...+....+..|..++++ |
T Consensus 94 ~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 139 (393)
T PRK15011 94 LACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------R 139 (393)
T ss_pred HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------c
Confidence 555555544 345555544444444445667777788888776554 4
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 228 --DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 --~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+...++.+.+.++|..++|.+++++.++.|||+.|++.++..++..++.+.
T Consensus 140 ~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 140 EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 344567888899999999999999999999999999887765555544444
No 63
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.80 E-value=2e-16 Score=167.63 Aligned_cols=196 Identities=9% Similarity=-0.039 Sum_probs=139.4
Q ss_pred ccccC-CCCCcccccCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHhHH
Q 008896 51 PVNVH-GKPIADLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLG 125 (549)
Q Consensus 51 ~~~~~-~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~ 125 (549)
..+|| |||. -|..+++. |.++...+..++ .+....+...+..++.+ ++|++..|.+++.+++.+++.++.++.
T Consensus 13 ~~~w~pe~~~-~w~~~~~~~a~r~l~~s~~~f~~-~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~ 90 (462)
T PRK15034 13 LRDWKPENPA-FWENKGKHIARRNLWISVSCLLL-AFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPY 90 (462)
T ss_pred ccCCCCCChH-HHhhcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 3344 45555444 555554444333 33333455555666655 899999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcc
Q 008896 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (549)
Q Consensus 126 G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 205 (549)
|++.||+ |.|+++.++.++..+.+++++++... + ..+...+++.|++.|++ ++..
T Consensus 91 G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~----~-------------------~~s~~~lli~r~l~Gig-g~~f 145 (462)
T PRK15034 91 SFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQN----P-------------------NTPFGIFIVIALLCGFA-GANF 145 (462)
T ss_pred HHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHcc----c-------------------CCCHHHHHHHHHHHHHH-HHhH
Confidence 9999997 99999999999988888877764110 0 03678899999999998 6678
Q ss_pred hhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----h-------------ccchHHHHHHHHH
Q 008896 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAI 267 (549)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-----~-------------~~gw~~~f~i~~~ 267 (549)
+.....++++||+++ ||++++++....++|..++++++..+. . ..+|+.++++..+
T Consensus 146 ~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~ 219 (462)
T PRK15034 146 ASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVP 219 (462)
T ss_pred HHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHH
Confidence 889999999999998 999999986666666665555543322 2 3347777777666
Q ss_pred HHHHHHHHHHhh
Q 008896 268 AMGISNMLFFIG 279 (549)
Q Consensus 268 ~~~i~~~~~~~~ 279 (549)
..++..++.++.
T Consensus 220 ~~iv~~i~~~~~ 231 (462)
T PRK15034 220 LLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHh
Confidence 665555555543
No 64
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.79 E-value=5.6e-17 Score=173.36 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
|+.++...+...+.......+. ...+++++ +|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFA-LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHH-hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHH
Confidence 4444444444444443333233 34567765 599999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++...... ..+...+++.|++.|++.+...+.....+.|.+|+++ |
T Consensus 103 ~~~~~~~~~~~~------------------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r 152 (438)
T TIGR00712 103 AVMLLMGFVPWA------------------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R 152 (438)
T ss_pred HHHHHHhccccc------------------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c
Confidence 887776543110 0245667788999999999998989999999999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHHh
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~-~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++++++++.+.++|+.+++.+.+.+. ...|||+.|++.++..++..++.++
T Consensus 153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877644 4568999999887776665444433
No 65
>PRK15075 citrate-proton symporter; Provisional
Probab=99.79 E-value=1e-16 Score=171.07 Aligned_cols=177 Identities=16% Similarity=0.102 Sum_probs=132.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH-HHHHHHHH-----HHHHHHhHHHHHhhhccchH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFLG-----ISQASSVLGGFLADAYLGRY 136 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~-~~~~~~~~-----~~~~~~l~~G~lsD~~~GR~ 136 (549)
++..||+.....++..+++.+....+. .+.+++.++++.++.+.+ +..+.... ...++.++.|+++||+ |||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr 86 (434)
T PRK15075 9 SRESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRR 86 (434)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chH
Confidence 344456677788888888888886554 556688889998776644 33332222 2236788999999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC
Q 008896 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 137 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
++++++.+++.++.++++++.....+. ......++++|++.|++.++..++...+++|.+
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 146 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA 146 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence 999999999999999888762110000 000124688999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHH
Q 008896 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAI 267 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~ 267 (549)
|+++ |++.++++....++|..+++.+++.+. +..|||+.|++..+
T Consensus 147 p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 147 TPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred Cccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 9998 999999988888888888877776652 46799999987543
No 66
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.79 E-value=3.3e-16 Score=165.06 Aligned_cols=163 Identities=14% Similarity=0.078 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+++..++..++...+...++. +.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||+++.++..++.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 4556677777877766555444444 4678999999999999999999999999999999997 9999999999999888
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+. .+ .++.|+++|++.++..|...+++.|.+|+++ |++
T Consensus 82 ~~~~~~~----------------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~ 124 (393)
T PRK11195 82 CLLMLFG----------------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVK 124 (393)
T ss_pred HHHHHHH----------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 7776553 22 2678899999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
+.++......+|..+||.++|++.+.. |+..+++.+...+++
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 776766555444333
No 67
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.2e-19 Score=183.60 Aligned_cols=180 Identities=18% Similarity=0.230 Sum_probs=162.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+..++.+..++++++++++.-|.+.. ...-+++.+|.++...+++.+.+.+...+..++.|+|+||| .|++++.++..
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 34456788889999999999987765 45677889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
++.+.+++.+++ ...+++.+.|.+.|+|.+.+.+..+++++|.||...
T Consensus 107 iW~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---- 154 (493)
T KOG1330|consen 107 IWTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---- 154 (493)
T ss_pred HHHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh----
Confidence 999999999987 578999999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|++.++++|++.++|.++|.++++++....+ |||+|++.++..++..++.++..
T Consensus 155 --Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 155 --RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred --hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988877 99999998887766665555443
No 68
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.78 E-value=3.3e-17 Score=169.86 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=134.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..+.+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.++
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------- 80 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS------------- 80 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh-------------
Confidence 3445688899999999999999999999999999999999997 99999999999999998888776
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TL 248 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p-~i 248 (549)
.+.+.++++|++.|++.+...+...++++|.+|+++ |++.+++.+.+.++|..++| .+
T Consensus 81 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 139 (379)
T TIGR00881 81 ---------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLV 139 (379)
T ss_pred ---------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHH
Confidence 467889999999999999999999999999999888 99999999999999999999 57
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 249 ~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.+.+..+|++.|++.++..++..++.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 140 LFGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 777777889999998877665554444443
No 69
>PRK11043 putative transporter; Provisional
Probab=99.77 E-value=7.3e-16 Score=162.53 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=129.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
+.+.+++|.+..+.++..+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.++
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~----------------- 91 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV----------------- 91 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 346789999999999999999999999999999999997 99999999998888888777665
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.+.+.++++|++.|++.+...+...+++.|.+++++ +++.++.......+|..++|.+++++.
T Consensus 92 -----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 92 -----------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred -----------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999988887888889999999877 888888888888899999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHh
Q 008896 254 MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 254 ~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..||++.|++..+..++..++.+.
T Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 155 NHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877766655544433
No 70
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.76 E-value=6.5e-16 Score=161.21 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
..+.++.+ .+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++..+
T Consensus 10 ~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 10 YLPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 33445544 467999999999999999999999999999999997 99999999999999988888765
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+....+|..++|.
T Consensus 77 -----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 77 -----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999888 999999999999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++++.+..||++.|++.++..++..++..+
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999899999998877666555544433
No 71
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.76 E-value=2.9e-16 Score=166.85 Aligned_cols=179 Identities=9% Similarity=-0.092 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+...+..++..++++.+.+.++.|+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 556666777788887777889999999999999999999999999999999999999999997 9999998877665554
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
...+......+.... ......+++.++.|.+.....+.. .++.+... +.++.
T Consensus 90 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~g~ 141 (420)
T PRK09528 90 FGPFFIYVFAPLLQY--------------------NILLGAIVGGIYLGFGFLAGAGAI----EAYIERVS----RRSGF 141 (420)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhhhhccchhhh----hhHHHHHH----hhccc
Confidence 432221100000000 011111222333333333322333 23322111 12566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++......++|..++|.+++++.+ .+|++.|++.++..++..++.+.
T Consensus 142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 7777777889999999999998876 58999998877766655555444
No 72
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.76 E-value=1.3e-15 Score=159.94 Aligned_cols=159 Identities=7% Similarity=-0.110 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH-HHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGL 150 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l-~~~g~ 150 (549)
+.+.+..++..+++-...++++.|+ +++|++..+.+++.+.+.+...+++++.|+++||+ ||+........+ ..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 3355556666666545567777777 57899999999999999999999999999999997 985433211111 11111
Q ss_pred H-HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 151 T-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
+ .+..+ .+.+.+++.|++.+.+.+...|...++..|. .++ |++
T Consensus 85 ~~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~ 128 (382)
T TIGR00902 85 AAFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGL 128 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCC
Confidence 1 11111 4677888899999998888888887776543 234 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
.++......++|..++|.+++++.++.|||+.|++..+.
T Consensus 129 ~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 129 DYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 899999999999999999999999999999999876554
No 73
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.75 E-value=6e-22 Score=212.13 Aligned_cols=344 Identities=15% Similarity=0.124 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchh
Q 008896 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (549)
Q Consensus 106 ~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (549)
..++..+.+.++..+|.+++|+++||+ |||++++++.++++++.++..++... .
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------------N 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence 456788999999999999999999997 99999999999999999988876210 1
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHH
Q 008896 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAF 262 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~---~gw~~~f 262 (549)
+...+.++|++.|++.|+..+....++.|..|++. |+...++.+....+|..++..++-.+.+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999999 99999999998888888887766544332 4599988
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCc--
Q 008896 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD-- 340 (549)
Q Consensus 263 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~-- 340 (549)
++..+..++.++... .+||||+| ++.+++.+++.+..+++.+.+.
T Consensus 175 ~~~~~~~l~~~~~~~--------------------------------~~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~~ 221 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRF--------------------------------FLPESPRW-LLSKGRDEEAEKVLRKLRGKEIED 221 (451)
T ss_pred ccccccccccccccc--------------------------------ccccccce-eccccccccccccccccccccccc
Confidence 877766554433322 26899999 9999988888888877554321
Q ss_pred cchhhHhhhhhccccCCCCCCcccCchhHHHHHHHHhhchhhhHHHHHH-HHhhhhhhHHHHH-HhhhccC--C------
Q 008896 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQ-AYTMNTH--M------ 410 (549)
Q Consensus 341 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~-~~~~~~~t~~~~q-~~~~~~~--~------ 410 (549)
.+..+.-....+.+ ..+..|+...+... .+|+++..+.+...+.... ....++.+.+..+ +...+.. .
T Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 299 (451)
T PF00083_consen 222 EEIEEIKAEKKESQ-ESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVN 299 (451)
T ss_pred cccccccccccccc-ccceeeeecccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11111111111100 00112322211110 1233333333332222111 1111111111111 1111100 0
Q ss_pred ------------CCCCCCCch-HHHHHHHHHHHHH--H------------HH--H--------------HHHHHHHhhcc
Q 008896 411 ------------GHPRGASQL-QRVGIGLAVSILS--V------------IW--A--------------GLLEFLYEEAP 447 (549)
Q Consensus 411 ------------~~~~~~~~l-~~i~~G~~~~~~~--~------------~~--a--------------~~~~~~~~~~P 447 (549)
+.+|+.... ..+........++ . +. . ..+.+..|.+|
T Consensus 300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfP 379 (451)
T PF00083_consen 300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFP 379 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence 222221111 0000000001010 0 00 0 12234468899
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008896 448 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 527 (549)
Q Consensus 448 ~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 527 (549)
.+.|+.++|+....+++++++++.+.+.+.+..+ ....|++.++++++..++.+++.+++++
T Consensus 380 t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------------~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 380 TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------------GWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------------------ccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 9999999999999999999999988777654221 1245778888888888888899999999
Q ss_pred ccccCCC
Q 008896 528 RSEQKHG 534 (549)
Q Consensus 528 ~~~~~~~ 534 (549)
++.+|.+
T Consensus 442 ~~l~ei~ 448 (451)
T PF00083_consen 442 KTLEEIQ 448 (451)
T ss_pred CCHHHHH
Confidence 9887644
No 74
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.75 E-value=9.6e-17 Score=175.39 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=128.4
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccccc
Q 008896 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (549)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (549)
.+.++.+.....+..+++.+|..+|+++.|++||+ +|||+++++++++.+++.++.+++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a-------------------- 168 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA-------------------- 168 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 35667788888999999999999999999999999 599999999999999999888887
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
.+...+++.|++.|++.++...+...+++|.++++. |+...++ ......++.+++.+++++..
T Consensus 169 --------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~-- 231 (521)
T KOG0255|consen 169 --------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR-- 231 (521)
T ss_pred --------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--
Confidence 689999999999999999999999999999999999 9999999 88888899999999999887
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 008896 257 GWGSAFGALAIAMGISNML 275 (549)
Q Consensus 257 gw~~~f~i~~~~~~i~~~~ 275 (549)
+|||.+++..+..++.+++
T Consensus 232 ~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 232 DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8999999988877766655
No 75
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.74 E-value=2.3e-15 Score=179.52 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~--~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+.+...++..++..+...+....+..++...++.+.. ..+++.+++.++..++.+++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 3455555666666666555555566677667776543 457888999999999999999999997 9999999998877
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+++.++..++... .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 136 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------ 136 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------
Confidence 7766655543210 357889999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~ 255 (549)
|+++++++..+.++|.++|+.+++++...
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998775
No 76
>PRK10133 L-fucose transporter; Provisional
Probab=99.74 E-value=3.2e-15 Score=159.75 Aligned_cols=154 Identities=13% Similarity=-0.009 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
....+..+.+..+...+....... +.+.+++++|.++.+.++..+.+.++..++.++.|+++||+ |||+++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 344566666666666666644444 45566999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..+... .+...++++|++.|+|.|...+...++++|..++++
T Consensus 102 ~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------ 150 (438)
T PRK10133 102 ALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_pred HHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence 9999876422110 467889999999999999999999999999766555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
|...++++.....+|..++|.+++.+.
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666688888888899999998877654
No 77
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.74 E-value=3.4e-15 Score=161.86 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHH-HHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAIF 142 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~----~GR~~~-~~i~ 142 (549)
||+.+.+++..+...+..+.....++.|+. +.|.+..+.+.. +..... +++.+++|+++||+ +||||. +.++
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 445666777777777777767777777765 569998888875 222222 36789999999994 298886 5566
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.++..++...+++.. |. .+.+.+.+.+++.+++.+...+...++.+|++|+++
T Consensus 88 ~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-- 140 (491)
T PRK11010 88 QLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-- 140 (491)
T ss_pred HHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--
Confidence 666666666665531 11 357778888999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
|+++.++...+..+|..+++.+++++.+ ..|||+.|++.++..++..+..+
T Consensus 141 ----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 ----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 57999999988876665544433
No 78
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.73 E-value=3.1e-15 Score=157.65 Aligned_cols=178 Identities=10% Similarity=-0.108 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+|......++...+...+.+.++.|+++++|.+..+.+++.+.+.++..++.+++|+++||+ |||+.++++.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 567777888888888888889999999999999999999999999999999999999999997 9999998887766554
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
...+......+... ......+++++++.|++.+...+....+..|..+ + ++.
T Consensus 82 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFGPLLQ--------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 44322211000000 0123345666788888888888888777766432 2 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
.++......++|..++|.+++.+.+ .+|++.|++.++..++..++.+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 5566667778999999999998765 5999999988776665554443
No 79
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.73 E-value=1.2e-14 Score=157.36 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..++...++.+++.......++ ++..++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+.++..+.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~-wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALA-WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 455566777777777754444444 44446677888888888888888999999999999997 9999999999888776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+++...... .+.+.+++.-++.|++.+...|...+++.|+.|+++ ...
T Consensus 89 ~~~L~~l~~~~~-----------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~ 139 (524)
T PF05977_consen 89 ALLLAVLAFFGL-----------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPA 139 (524)
T ss_pred HHHHHHHHHhCc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHH
Confidence 665554422111 467778888899999999999999999999999988 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.++.....|+.-.+||.++|.+....|-.+.|.+.+++.++.++.+..
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998889999999888776665544433
No 80
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.72 E-value=9.2e-15 Score=148.84 Aligned_cols=183 Identities=14% Similarity=0.094 Sum_probs=149.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+.++|+.+.-.+.... .+..+.+...+.+++.+++|+|+.|.++++.+..+...+..++-|++.||+ |-|++..++++
T Consensus 10 ~~~~~~L~~S~~af~v-~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLAFDV-GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 4445555554444444 444445667788999999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+.++-.+.++++... .+.+.+++..+++|++.+ ..+...+.++..||+++
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence 888888888776331 344688888999999755 45778889999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
.|.+.+++. ..|+|..+..+++..+....| |+.+.++..+..++..+.+++..++
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999999 899999999999999998888 9999888888888877777665544
No 81
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.71 E-value=2.8e-15 Score=155.53 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
.+..++..++.....+...+.++.++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 44556666666667766666666679999999999999999999999999999999999997 99999999999999998
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
++++++ . +.+.++++|++.|++.+. .+...++++|.+|+++ |++
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 888776 4 677888999999998664 4567889999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~i 264 (549)
..+++....++|..+++.+++.+.. ..+||+.|++
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9999887778888888777766654 2489999944
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.71 E-value=1.2e-14 Score=173.39 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=111.7
Q ss_pred HHHhcCCCh-HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH--HHHHHHHhhhhcccCCCCCccccc
Q 008896 96 MFYVMHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA--GLTGITLCATMKVFMPNQDNCDRI 172 (549)
Q Consensus 96 l~~~l~~s~-~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 172 (549)
++...+.+. ...++..+++.+...++.+++|+++||+ |||+++.+...+.++ ...+..+. .
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~-~-------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH-L-------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence 333444433 3456778889999999999999999997 999986443222222 11111111 0
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008896 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l 252 (549)
.+.+.++++|+++|++.+...|...+++.|++++++ |+.++++.+.+.++|.++||.++|++
T Consensus 106 ------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l 167 (1140)
T PRK06814 106 ------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLA 167 (1140)
T ss_pred ------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999988 99999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHH
Q 008896 253 QMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 253 ~~~~gw~~~f~i~~~~~~i~~~~ 275 (549)
....||++.|.+.+++.++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 168 TISGNFVILVALLMGIAVLGWLA 190 (1140)
T ss_pred HhccccHHHHHHHHHHHHHHHHH
Confidence 99999999985444444444333
No 83
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.70 E-value=4.9e-14 Score=149.74 Aligned_cols=163 Identities=15% Similarity=0.021 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
...+.+..++...++-...++++.|+++++|++..+.+++.+.+.++..++++++|+++||+.|||+++.++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 4 TAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34566666777777766678999999999999999999999999999999999999999997234778888887776666
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhc--------ccCCCCChh
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA--------DQFDERSKD 222 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a--------d~~~~~~~~ 222 (549)
.+..+. .+...+++.+++.+++.+...+...+... |......
T Consensus 84 ~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~-- 133 (418)
T TIGR00889 84 FFAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP-- 133 (418)
T ss_pred HHHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--
Confidence 665543 35666778888888877766665554432 2222122
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~ 274 (549)
|.+.++ .+|.+++|.+++.+.....|. +|++.++..++..+
T Consensus 134 ----~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 134 ----PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV 174 (418)
T ss_pred ----Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence 445444 378888888888884433454 35555544444443
No 84
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.69 E-value=4.4e-15 Score=165.12 Aligned_cols=209 Identities=14% Similarity=0.087 Sum_probs=154.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
+..+++.+...+...++......++.....+.+.++++++..+.+++.+.+.++..++.++.|+++||+ ||++.+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ 105 (633)
T TIGR00805 27 LFSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGC 105 (633)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecH
Confidence 344565554555544454455556777778889999999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccC--------------CCCCccccccc-------ccCCCCCcc--hhhHHHHHHHHHHHHHh
Q 008896 144 TIYLAGLTGITLCATMKVFM--------------PNQDNCDRISQ-------LLGSCEPAK--SWQMLYLYTVLYITGFG 200 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~l~g~g 200 (549)
+++.+|.+++++.-+...-. ...+.|...+. ....|...+ ......++++|++.|+|
T Consensus 106 ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG 185 (633)
T TIGR00805 106 AIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG 185 (633)
T ss_pred HHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence 99999999988753211000 00112310000 001232222 12356788999999999
Q ss_pred ccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------ch
Q 008896 201 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GW 258 (549)
Q Consensus 201 ~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~----------------------gw 258 (549)
.+...+...+++.|.+|+++ |+..+++++.+..+|+++|+++++++.+.+ +|
T Consensus 186 ~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW 259 (633)
T TIGR00805 186 ATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW 259 (633)
T ss_pred CCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999998 999999999999999999999999887532 27
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008896 259 GSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~~~ 279 (549)
+.+|++.+++.++..+.+++.
T Consensus 260 wl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 260 WIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 777887776665555444443
No 85
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.1e-15 Score=152.81 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCC
Q 008896 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (549)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (549)
+++...+.+.....++.++|+++.||++|++ |||+++...++++++++++++++- |..
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------------~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------------GTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence 5567778888889999999999999999986 999999999999999998666541 122
Q ss_pred cchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHhhc--
Q 008896 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL----SVTVGAIVAFTLVVYIQME-- 255 (549)
Q Consensus 182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~----~~~ig~~i~p~i~~~l~~~-- 255 (549)
+...-+.++...|+++|+|.|+=+|+..+..+|....+. ||...+.... +...|+.++-++.+-+...
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 222356788899999999999999999999999998888 8888777443 3344444444333333211
Q ss_pred ---------cchHHHHHHHHHHHH
Q 008896 256 ---------HGWGSAFGALAIAMG 270 (549)
Q Consensus 256 ---------~gw~~~f~i~~~~~~ 270 (549)
.=||..|.+.++..+
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHH
Confidence 128988877665544
No 86
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.69 E-value=9e-15 Score=152.40 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHH--HHHH---HHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 81 ERMAYFGLSVNMVTFMFYVMH--KSFADSSNAVN--NFLG---ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~l~--~s~~~a~~~~~--~~~~---~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
+.+..+.+. .+..++.++.. .++++.+...+ .+.. +..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 5 EWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 444444333 45556666544 33444443333 2333 3346789999999997 99999999999999998888
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
+++...... .......++++|++.|++.+...+....+++|.+++++ |++..++
T Consensus 83 ~~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 136 (394)
T TIGR00883 83 GLLPSYATI--------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSF 136 (394)
T ss_pred hhCCChhhh--------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHH
Confidence 775221000 00112357889999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~i~~ 273 (549)
.+.+..+|..+++.++..+. +..+||+.|++.++..++..
T Consensus 137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 99999999999998877654 35689999987766554443
No 87
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.68 E-value=6.5e-14 Score=148.41 Aligned_cols=173 Identities=11% Similarity=0.023 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+.+..++..+.. ++...+.+.+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 3444555555555555 4555667788999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+.. ..+.+.++++|++.|+|.|...+...+++.+..|+++ |++
T Consensus 82 ~~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~ 130 (410)
T TIGR00885 82 AFLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATR 130 (410)
T ss_pred HHHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHH
Confidence 877654321 0367888999999999999999999999999998887 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~--------------------------~~gw~~~f~i~~~~~~i~~~~ 275 (549)
..++.+...++|..++|.+++.+.. ..+||++|.+.++..++..++
T Consensus 131 ~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 131 RLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887742 246999998777655544333
No 88
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2e-16 Score=160.60 Aligned_cols=178 Identities=22% Similarity=0.231 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chH-HHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRY-WTIAIFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~-GR~-~~~~i~~~l~~ 147 (549)
.+|.+.++.++..+..|++..|.|.|+.+..|++..++++..++|..+...++++.||+|||+| ||| ++-++++++.+
T Consensus 253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999 766 45566666666
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+.+..+ |. .|..+..++++++|+...+++-.+.....|..|.+. -
T Consensus 333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a 380 (448)
T COG2271 333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A 380 (448)
T ss_pred HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence 677666665 21 366788888999999999999888888999999888 7
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 228 ~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.++..++..+ |+.++....+++.|.+||...|.+..++.+++.++++..
T Consensus 381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 7777777777666 899999999999999999999998877777766665543
No 89
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.67 E-value=7.3e-14 Score=146.50 Aligned_cols=156 Identities=8% Similarity=-0.023 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH----HHHHHHHHHHHHHHHHH
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~----~~~~i~~~l~~~g~~~~ 153 (549)
.++..++...+.+.++.|+ +++|.+..+.+++.+.+.+...++.+++|+++||+ ||+ +.+.+...+. .+.+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence 3444455555667778888 56899999999999999999999999999999997 984 3322222111 1111
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
... . .+.+.+++.|++.|++.+...+...++..|.. ++ |++.++.
T Consensus 88 ~~~-~--------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~ 132 (382)
T PRK11128 88 WFG-A--------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGK 132 (382)
T ss_pred HHh-c--------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcch
Confidence 111 0 36778888999999999988888888777752 33 6677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
.....++|..+||.+++++.++.|||..|++.++..++..
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 7777789999999999999999999999987775544433
No 90
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.67 E-value=1.6e-14 Score=153.83 Aligned_cols=175 Identities=16% Similarity=0.149 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHH-HHHHHHHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~-~~~i~~~l~~~g~~~~~ 154 (549)
+...+....+..+++.|+++++|++..+++++.++..+..++..++.|+++||. +|||| .++++..+..++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344455555667899999999999999999999999999999999999999984 58754 67777777777777665
Q ss_pred HhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhhhHHHH
Q 008896 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNF 233 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~ 233 (549)
.... .. .......+++.+++.+++.+.......++.+|..++ ++ |++..++
T Consensus 89 ~~~~---~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~ 140 (437)
T TIGR00792 89 TTPD---FS-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF 140 (437)
T ss_pred hCCC---CC-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence 5311 00 002355666777788888888888888888998754 44 8899898
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 234 FYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
.....++|..+++.+.+.+.. ..||++.+.+.++...+..++.+...+
T Consensus 141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 888888888777776655542 458999988877766665555444333
No 91
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.66 E-value=2.5e-13 Score=143.43 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHH-HHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAG 149 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~----~GR~~-~~~i~~~l~~~g 149 (549)
+...+...+.+.-....+|.|+.+ .|++.++.+++..+... .+..+++|+++||+ +|||| .+.++.++..++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 344555555555566678888864 59999999988655554 57889999999996 27765 677777777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
+.++.+.. +. .+.+.+++..++.+++.+...+...++.+|.+|+++ |++
T Consensus 82 ~~~l~~~~------~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~ 130 (402)
T PRK11902 82 IAAMAFCP------PH-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGA 130 (402)
T ss_pred HHHHHhcC------cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhH
Confidence 77665531 00 345666666677788888899999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~~~ 275 (549)
+.++...+..+|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998885 59999999877765554443
No 92
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.66 E-value=1.8e-14 Score=149.31 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..+.+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+ ..
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------- 84 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------- 84 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 4456677889999999999999999999999999999999997 99999999988877776655 32
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+...+++.|++.|++.+...+..+....|.++ ++ |++.+++++.+.++|..+++.++
T Consensus 85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999888888888888886 46 89999999999999999999999
Q ss_pred HHHhhcc--chHHHHHHHHHHHH
Q 008896 250 VYIQMEH--GWGSAFGALAIAMG 270 (549)
Q Consensus 250 ~~l~~~~--gw~~~f~i~~~~~~ 270 (549)
+.+.+.. +||+.|.+.++..+
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Confidence 9887765 39988876655433
No 93
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.60 E-value=5.3e-14 Score=152.61 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=131.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|+.........++..+.+|++..++|.|+++.+|++..++........++..++.+++|+++||+ |||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 455554444555666788889999999999989999988888877888888999999999999997 9999988887654
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..... . .+...+++++++.+++.++..+....+..|.+|++.
T Consensus 327 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------ 375 (490)
T PRK10642 327 FVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------ 375 (490)
T ss_pred HHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------
Confidence 443333222100 0 235567778888888777777778888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++++++.+....+++.++|.+.+++.+..+ |+..+++..+..++.++..++
T Consensus 376 Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 376 RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999998444455667889999999887654 676666555554444444433
No 94
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.59 E-value=1.5e-12 Score=136.23 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 89 SVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 89 ~~~l~~yl~~~l~~s~~~-a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
.+.+.+|+.+++|++.++ .+.+.+.|..++.++.+++|+++||+ |-|+++.++.+...+..+++.++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 355678999999999999 99999999999999999999999997 99999999999999999988886
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+...+.+.|++.|++.|+.. +...++..++|+++ |+++.+++..+..+|.+++++
T Consensus 113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999 99999999999988 999999999999999999999
Q ss_pred HHHHHhhccchHHHHHH---HHHHHHHHHHHHHhh
Q 008896 248 LVVYIQMEHGWGSAFGA---LAIAMGISNMLFFIG 279 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i---~~~~~~i~~~~~~~~ 279 (549)
+++++ ..+||++-+.+ ......+++++.++.
T Consensus 169 L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 169 LGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99994 46799986643 444455555555443
No 95
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=136.54 Aligned_cols=170 Identities=13% Similarity=0.019 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
....+.+-+....|.+..+..++......+..++...+|.++|++ |||+...+......+.-++-..+
T Consensus 96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s----------- 163 (528)
T KOG0253|consen 96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS----------- 163 (528)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-----------
Confidence 334445556677888888999999889999999999999999997 99998877765555444433332
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
+|...+++.|.+.|+|.|+ .|...++-.|..|..+ |....-.. ....+|.++...
T Consensus 164 -----------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~ 218 (528)
T KOG0253|consen 164 -----------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEAL 218 (528)
T ss_pred -----------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHH
Confidence 5788899999999999999 8999999999999888 77776665 556788888887
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 294 (549)
++=.+..+.||||-.........+...+.++..+.-|..-.+|++..
T Consensus 219 law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k 265 (528)
T KOG0253|consen 219 LAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK 265 (528)
T ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH
Confidence 77777788899998776665544444444443333333334454433
No 96
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.59 E-value=9.5e-13 Score=133.42 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+...-++..+.. .....+.+.+++.++++..+++++...+..++.++++..|++.+|+ |+|+.++++..++++|
T Consensus 14 ~~v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg 91 (422)
T COG0738 14 AFVLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVG 91 (422)
T ss_pred HHHHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 3333333334444443 4667789999999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.=++. ..+...++++++++|.|.+......+++++.+.++++ -..
T Consensus 92 ~~lF~pAa~-------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~ 140 (422)
T COG0738 92 AALFWPAAS-------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAF 140 (422)
T ss_pred HHHHhhhhh-------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHH
Confidence 988864322 1577889999999999999999999999999999876 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
-+++.+..+.+|+.++|.+++++..
T Consensus 141 rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 141 RLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778888889999999999998766
No 97
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.58 E-value=2.7e-13 Score=135.69 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCc
Q 008896 103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (549)
Q Consensus 103 s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (549)
+..-++.+-+.|.+...+..++.|.+||++ |||+++++|.+..++.+++.+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-------------------------- 118 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-------------------------- 118 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 445678889999999999999999999997 99999999999999988888876
Q ss_pred chhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
.|...++++|++.|+..|-. ..+-++++|.+++++ |+.+++....+..+|..+||.+++++..
T Consensus 119 --~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 57777888899999998764 678899999999988 9999999999999999999999999987
No 98
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.58 E-value=9e-13 Score=142.00 Aligned_cols=175 Identities=8% Similarity=-0.028 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTT 144 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G-----R~~~~~i~~~ 144 (549)
....+....+.+.+. +.+...+.+++.+++|++.++.+...+...+...+-++ +|+++|++ + ||+.+.++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence 344555577888887 67777888999999999999999888988888888776 99999997 6 6777777765
Q ss_pred HHH-HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 145 IYL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 145 l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
+.. +....++.. + .......+.+++.+++.+....+..++..|..+ ++++
T Consensus 104 l~~~~~~~~l~~~-------~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~- 154 (468)
T TIGR00788 104 LGSAILYGLLPGK-------V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS- 154 (468)
T ss_pred HHHHHHHHhcccc-------c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC-
Confidence 542 222111110 0 123334447788999999999999999999998 4421
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++...++.+.+.++|..+|+.++|++.+..+|+..|++.++..++..+..++
T Consensus 155 --~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 155 --AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred --cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 13445566677778999999999999999999999999887776666444333
No 99
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.56 E-value=8.5e-12 Score=133.27 Aligned_cols=198 Identities=12% Similarity=0.056 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh---ccchHHHHHHH-HHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIAIF-TTI 145 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~---~~GR~~~~~i~-~~l 145 (549)
.++.+....+...+++-...+++++|+ +++|.+....+.+..+..+...+..++.|++||| .+||||.++++ .+.
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 445555666666777755666666665 6899999999999999999999999999999995 24999998875 555
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.++++++++.+.....+... . ............++++..+..++....++...++++|++|+++++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~--- 149 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR--- 149 (477)
T ss_pred HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence 55566666554221110000 0 000000011234455555666788888888999999999988621
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH--hhc-------------cchHHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QME-------------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l--~~~-------------~gw~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
++.+.++.....++|..+|+.++++. .+. .+.++.|++.++..++..++.++..+++
T Consensus 150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 36789999999999999999998875 221 1578899988887777777666655543
No 100
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-13 Score=138.74 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=136.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 008896 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
.++-++++.+++...+.+...+..++.|.+.||+ |+|-.++++++++...++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 3556778899999999999999999999999997 99999999999999999999986
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
.++++++++|.++|+|.+....+..++++|.||++.. |++.+++..-...+|-.+||.++|.+.+..|.
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 4678999999999999999999999999999998874 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 259 GSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
+.+|.+.++..++...+-++..+.+
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCcc
Confidence 9999999988888777666655443
No 101
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1e-12 Score=141.81 Aligned_cols=174 Identities=15% Similarity=0.078 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
|.+.+..|+..+..+++.. .+...+.++++.+..+.+++.++......+..++.+.+.||+ |.|.+.+++.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 4555555555555555332 345677889999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
|+++..++ .+.+.+++.. ++.|+|.|+.+......++..|+. + |
T Consensus 124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R 168 (509)
T KOG2504|consen 124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------R 168 (509)
T ss_pred HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------H
Confidence 99999887 4566666554 568999999998888888877764 3 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+.+.++-..+..+|..+=|.+..++.+..|||+.+++.....+-..+.....++
T Consensus 169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888888888889999999999999999999999998877766555555555444
No 102
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.55 E-value=1.6e-12 Score=140.91 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
....+++..++|-++ ...++.+.+.++..+..++.|.|||.+ |||..++++.++.++|.++++.+
T Consensus 64 a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 456678999998864 456777889999999999999999975 99999999999999999998865
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
++...++.+..+.|+|.|... .....++|..|.+. |..+..+......+...++|.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 678889999999999976665 55666899999888 88887777666666666788888
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
..+..+.+|||.|++.++...+++++.
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 777777899999999888766665443
No 103
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.55 E-value=1.6e-12 Score=134.81 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHHH-HHHHHHHHHHHHHHHHhhhhccc
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~----~GR~~~~-~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
+...+.+.+.+++|++.++.+..... .+...+ .+++|+++||+ +||||.+ +++.++..+.+..+++...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 34445566677899999999988644 333333 78999999997 4899975 5566666666555544310
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
..+...+....++.+++.+...+...++++|.+|+++ |+.+.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 0345556666667788888888999999999999888 9999999999999999
Q ss_pred HHHHHHHHHHhhccc--------hHHHHHHHHHHHHHHHHHHHh
Q 008896 243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 243 ~i~p~i~~~l~~~~g--------w~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+++.+++++....| ||..|++.++..++..++.++
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888 999999888776665554443
No 104
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.50 E-value=3.3e-11 Score=126.66 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH--HHHHHHHHH-HHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQ-ASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~--~~~~~~~~~-~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
...+....+.+.+.+..+.+.+|.|++ +.|.+.++.+.. ..+...... .+|++.++++||+ ||||.+++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 445566677777777666677777775 679999999986 344455554 4444557789986 99998766653322
Q ss_pred H-HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
. ....+.... +. .....+++...++.++..+...+...++..|..++++
T Consensus 81 ~~~~~~~~~~~------~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALVG------PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcCC------cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 2 222222110 00 0112233444455566667777777777778777666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++...+....+..+|..+|+.+.+++.++.|||..|++.++..++..+..++.
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777778888899999999999999999999999998887766655554443
No 105
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.49 E-value=1.2e-12 Score=141.22 Aligned_cols=177 Identities=16% Similarity=0.078 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.+|.+.+..++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+.+.+...+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 3577777888888888888889999999999999999999999989999999999999999997 998877665544443
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..++.+... .+.....+.+++.|++..+..........|.+|++. |+
T Consensus 337 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g 384 (467)
T PRK09556 337 IFTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG 384 (467)
T ss_pred HHHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence 3322222100 234445566777776554444444566779999988 99
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~i-g~~i~p~i~~~l~~------------~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.++.+...++ |+.++|.+.|++.+ ..||+..|++..++.+++.++.++
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999888886 77999999999999 678999998887777666555443
No 106
>PRK09669 putative symporter YagG; Provisional
Probab=99.47 E-value=1.1e-11 Score=132.79 Aligned_cols=182 Identities=10% Similarity=0.044 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchH-HHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRY-WTIAIFTTIYL 147 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~-~~~~i~~~l~~ 147 (549)
+.-.+..+...+....+..+++.|+++.+|++...++.+..+..+..++.-++.|+++||. +||| +.++++.+...
T Consensus 12 ~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~ 91 (444)
T PRK09669 12 IGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFG 91 (444)
T ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHH
Confidence 3333445555666666778899999999999999999999999999999999999999994 4875 55556666666
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..+++... |.... ......+++..++.+++.........++.+|+.++.++ |
T Consensus 92 i~~~l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R 144 (444)
T PRK09669 92 VVCLLTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----R 144 (444)
T ss_pred HHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----H
Confidence 665544332 11100 13455556666666777777777788999998854332 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
.+..++.....++|..+++.+...+.. ..||+..+.+.++...+..++.++..
T Consensus 145 ~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~ 204 (444)
T PRK09669 145 HSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMT 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 888888887888887777765543332 34677777666665555544444433
No 107
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.46 E-value=2.2e-11 Score=131.61 Aligned_cols=177 Identities=10% Similarity=-0.017 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cch-HHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGR-YWTIAIFTTIYLAG 149 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR-~~~~~i~~~l~~~g 149 (549)
-.+..+...+.+..+..+++.|+++.+|++....+.+..+..+.-++..++.|+++||. +|| |+.++++.+...++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV 90 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence 33455566667767778899999999999999999999999999999999999999942 498 55666677777776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCC-CCChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~r~ 228 (549)
.+++... +... .......+++..++.+++.........++.+|+.+ +++ |.
T Consensus 91 ~~llf~~---p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~ 142 (473)
T PRK10429 91 LFLLFSA---HLFE-------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------RE 142 (473)
T ss_pred HHHHHcC---CCCC-------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HH
Confidence 6555432 1100 00234445555566778888888888899999985 444 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..++-....++|+.+.+.+...+.. ..||++...+.++..++..++.++
T Consensus 143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 88888666667776665555443322 224666655555554444444444
No 108
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.46 E-value=8.5e-12 Score=131.44 Aligned_cols=171 Identities=11% Similarity=0.090 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+..+...++....++....+++.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+.+.++.+...+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~ 297 (393)
T PRK15011 219 LLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYA 297 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 3333344444445555566788999999999999998888877777888899999999997 999988777655544433
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+... .+...+++.+++.+++.|...+....+..|.+|+ + |+++.
T Consensus 298 ~~~~~----------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~ 342 (393)
T PRK15011 298 GMLMA----------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSAT 342 (393)
T ss_pred HHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHH
Confidence 33222 2345556677777776666666667777888874 4 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++++...++|..++|.++|++.+..||++.|++..+..++++++.+.
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99888889999999999999999999999998877777666665544
No 109
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.4e-11 Score=130.11 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=125.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccc
Q 008896 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (549)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (549)
+.+++|+...+.+.+.++|.++++++.+++|.|.||+ .-.+.+..+.++..+..++....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~------------------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV------------------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3467888889999999999999999999999999997 86666666655555544433332
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--
Q 008896 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-- 253 (549)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-- 253 (549)
.|.+.+++.|++.|+..++..|+...+++-++.+++ |+.-+++++.+..+|..+|.+++..+.
T Consensus 132 ---------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 132 ---------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred ---------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 578899999999999999999999999999999999 999999999999999999999998863
Q ss_pred ----hccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 254 ----MEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 254 ----~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
...||||.|.+.+++.++..++.++..
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHheEEEEe
Confidence 346899999999887776665555543
No 110
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.45 E-value=1.3e-10 Score=122.38 Aligned_cols=117 Identities=11% Similarity=0.022 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.+....++..+.+-...++++.|+++ .|++..|.+.+.++..+...+.+++.|+++||...++|.+.+..++..+....
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566788899864 78999999999999999999999999999999845778887776665554444
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
.... .+.+.+++..++..+......|...++.-+...+
T Consensus 85 ~~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 85 LAFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 3332 3455566667777787777778777777666653
No 111
>PRK09848 glucuronide transporter; Provisional
Probab=99.44 E-value=4.5e-11 Score=128.19 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHH-HHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~-~i~~~ 144 (549)
+..+.-.+..+...+.+..+..+++.|+++.+|++..+++.+.....+..++..++.|+++||. +||||.+ .++.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 3444444566667777766777888999999999999999999999999999999999999985 4777755 55555
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
...+..+++..... ... .......+++..++.+++.+...+...++..++..+.++
T Consensus 88 ~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~--- 143 (448)
T PRK09848 88 PLMIFSVLVFWVPT--DWS-------------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS--- 143 (448)
T ss_pred HHHHHHHHHHhCcC--CCC-------------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH---
Confidence 44444333321100 000 002334445555677888888888888887777765432
Q ss_pred hhhhhHHHHHHHH-----HHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLS-----VTVGAIVAFTLVVY 251 (549)
Q Consensus 225 ~~r~~~~~~~~~~-----~~ig~~i~p~i~~~ 251 (549)
|.+..++-.++ .+++..++|.+.+.
T Consensus 144 --r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 144 --RARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665554433 34556666666554
No 112
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.42 E-value=3.8e-10 Score=113.08 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=144.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
|..+..+.++.+--+-...++ .++..-+.+++|+|.++++++.++..+...+..+++.+|+.|+ |-.+.+..++++..
T Consensus 11 ~~li~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence 445555555555556666444 4577889999999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+|.++=... +...++.+-.+.|+|.+......++++-+-||.+.
T Consensus 89 ~G~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~------- 132 (395)
T COG2807 89 AGILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV------- 132 (395)
T ss_pred HHHHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence 887765442 45668888889999999999999999999999765
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHh
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..+++|.....+|+++++.+...+.++. |||..+.+=+...++++++++.
T Consensus 133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999998877 7999988777777777766654
No 113
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.41 E-value=1.5e-11 Score=129.46 Aligned_cols=170 Identities=13% Similarity=0.059 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~ 158 (549)
++..++++.+..+++.|+.+ .|.+ +.+...+.+.++..++.++.|+++||+ |||+.+.++..+..++.+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455565666777888754 5653 345566777888888999999999997 99999988888777777666553
Q ss_pred hcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHH
Q 008896 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~ 238 (549)
.+...+++++++.|++.++..+.......|.+|++. |++.+++++...
T Consensus 300 --------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 347 (399)
T PRK05122 300 --------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL 347 (399)
T ss_pred --------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 345556777889999999888888888889998877 999999999999
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008896 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 239 ~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
.+|..++|.+.+++.+..||++.|++.+++.++++++.++..++.+++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999988877777766655554444333
No 114
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.41 E-value=3.9e-11 Score=124.80 Aligned_cols=176 Identities=11% Similarity=-0.039 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+...+..++..+++-...++.+.++++..|++.++.+.+.+...+...+..++.|.++||+ |.||-+++...+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3666677777777777666778999999999999999999999999999999999999999997 966554444333222
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHH----HHhccCcchhhhhhhcccCCCCChhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT----GFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
....+..-...|.+. .| +.++.++. ++......|...++..+...
T Consensus 86 l~~pff~~v~~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr------- 134 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR------- 134 (412)
T ss_dssp TCHHHHHHTHHHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHH-------
Confidence 111111110111111 11 22222222 23333333444333322211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
..+-=++--.....+|.+++..++|++.+ .+-...||+..++.++..++.++
T Consensus 135 -~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 135 -RNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp -HHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -HhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 11222233455667999999999998876 45667888876665555444444
No 115
>PRK09952 shikimate transporter; Provisional
Probab=99.40 E-value=2.5e-11 Score=129.85 Aligned_cols=183 Identities=12% Similarity=-0.003 Sum_probs=131.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++++.........++..+.+|.+..+++.|+++.+|++......+.........++.+++|+++||+ |||+++.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444445566777788888889999999999999887665555556666778888999999997 999998888766
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+.+..... .. .....+++..++.+++.+...+...++.+|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5554433332210 00 123334445566678888878888999999999988
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~--gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|+++.++ +..+..+|+.++|.+.+++.+.. +|...+.+.+++.+++.+..+..
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999888 55556799999999999998744 48888877776666666555443
No 116
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.40 E-value=1.3e-11 Score=138.36 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHH
Q 008896 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (549)
Q Consensus 111 ~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (549)
..+..++..++.+++|+++||+ |||+++.++.++..++.+++++. .+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence 4455678889999999999997 99999999998888887777654 234456
Q ss_pred HHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 008896 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
++.+++.+++.++..+...++++|++|++. |++++++.+....+|+++||++++++.+. +...+|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 666777888888888899999999999988 99999999999999999999999988764 45567777766666
Q ss_pred HHHHHHHh
Q 008896 271 ISNMLFFI 278 (549)
Q Consensus 271 i~~~~~~~ 278 (549)
++.++.++
T Consensus 725 l~~ll~~~ 732 (742)
T TIGR01299 725 CGGLLALK 732 (742)
T ss_pred HHHHHHHh
Confidence 65555443
No 117
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.39 E-value=2e-11 Score=124.86 Aligned_cols=173 Identities=20% Similarity=0.232 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-HHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-~~~i~~~l~~~ 148 (549)
..+...+..++..........+.+.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 344455556666666667778888888888899999999999999999999999999999997 9999 99999988888
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+... .+...+++..++.|++.+...+....+..|..|+++ |+
T Consensus 255 ~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~ 300 (352)
T cd06174 255 GLLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RG 300 (352)
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HH
Confidence 88877654 345667888899999999999999999999999887 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+.+++++...++|..++|.+.+++.+..+|++.|++.++..+++.++.+
T Consensus 301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 301 TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999988887777666543
No 118
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.39 E-value=1.2e-11 Score=127.95 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
.+.+.+..++..+.........++|. +++|.+..+.+...+.+.++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 33444444444444444555566665 56899988889999999999999999999999997 99999999888888877
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++..... .+...+++..++.+++.+...+..+.+.+|.+|+++ |++.
T Consensus 285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~ 332 (377)
T TIGR00890 285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN 332 (377)
T ss_pred HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence 76654311 122334455677888888888888889999999988 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
+++++....+|..++|.+.+++.+..||++.|.+.+++.++++
T Consensus 333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988776665543
No 119
>PRK03699 putative transporter; Provisional
Probab=99.39 E-value=1.7e-11 Score=129.21 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+.+..++...+.+++..++|.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.+...+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 455555666666777778889999999999999999999999999999999999999999997 9999888777665555
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++... .+...+.+..++.|++.++..+...++..|..|.+ ++.
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4444332 23344555667788888888888888888877643 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
..++......+|..++|.+.|++.+..|++..|++.++..+++.++...
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 6677777888999999999999999999999998777766655544433
No 120
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.37 E-value=3.5e-11 Score=125.10 Aligned_cols=165 Identities=10% Similarity=0.040 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~ 157 (549)
.++..........+++.|+.+++|.++.+.+.......+...++.+++|+++||+ |||+++.++.++..++.......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~- 285 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD- 285 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH-
Confidence 3333333444556778899999999999988887777777777888999999997 99999888776555544433332
Q ss_pred hhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHH
Q 008896 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~ 237 (549)
.+.+.+++.+++.|++.+...+....+..|.+|+ + +++.+++++..
T Consensus 286 ---------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~ 331 (375)
T TIGR00899 286 ---------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNT 331 (375)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHH
Confidence 3455566677788888888778888888898875 3 56899999999
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 238 ~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++|..++|.+++++.+..||+..|++.++..+++.++.+.
T Consensus 332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999888777766665443
No 121
>PTZ00207 hypothetical protein; Provisional
Probab=99.36 E-value=4.4e-11 Score=130.49 Aligned_cols=180 Identities=9% Similarity=0.009 Sum_probs=131.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
..++|..+.....+..+.... |++.. ....+++++|++..+.+++.++... ..++.++.|+++||+ |||+++.++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~-y~fsv-~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ 98 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFM-YAFNL-ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSM 98 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 355675555545444444333 34443 4567889999999999888776443 345566789999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
+++.+|.++++++... ... .+.+.+++.|++.|+|.+...+.....+.++|| ++
T Consensus 99 ll~~iG~ll~ala~~~--~i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~--- 152 (591)
T PTZ00207 99 TVFCLGTLLFALTFQE--VIE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN--- 152 (591)
T ss_pred HHHHHHHHHHHHHhcc--ccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---
Confidence 9999999998875221 001 367889999999999999888888888999997 56
Q ss_pred hhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 224 KTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i-~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
||+..++......+|+++ +++..+++. .+|++.|++.++..++..++.+.
T Consensus 153 ---RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 153 ---RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999975 555555554 35777777766665554444433
No 122
>PRK11462 putative transporter; Provisional
Probab=99.35 E-value=1.1e-09 Score=117.86 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHH-HHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYLA 148 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~~-i~~~l~~~ 148 (549)
.-.+..+...+.+..+..++..|+++.+|++...++.+..+.-+.-++.-|+.|.++||. +||||-++ ++.+.+.+
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i 92 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI 92 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence 334555555666666777899999999999999999999999999999999999999973 68775544 56666777
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+++... |...+ ......+++.-.+..++.........++.+|+.++.++ |.
T Consensus 93 ~~~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt 145 (460)
T PRK11462 93 VCVLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RI 145 (460)
T ss_pred HHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HH
Confidence 76665533 11111 12344455555567788888888888999999885443 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~-------~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+..++...+.++|..+++.+...+... .||+....+.++..++..++.+...+
T Consensus 146 ~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~k 205 (460)
T PRK11462 146 SLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTK 205 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcce
Confidence 999998888888888887776554432 24666655555544444444444333
No 123
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.35 E-value=2.9e-11 Score=129.88 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHH-HHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~-GR~~~~-~i~~~l~ 146 (549)
+.+|...+..++.....+++..++|.|++++.|++..+++.....+.++..++.+++|+++||+. |||+.. .+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 35666777777777777888899999999999999888888888888888999999999999962 344332 2222333
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++.+. +. .+....+++.++.|.+..+.......+..|.+|++.
T Consensus 333 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 3333332221 00 123333444555555443333344456779999988
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i-~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.+++.+...++|+.+ +|.+.|++.++.||++.|++..+..+++++....
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888655 7999999999999999998877766665554443
No 124
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.35 E-value=9.4e-11 Score=124.98 Aligned_cols=177 Identities=14% Similarity=0.062 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchHH-HHHHHHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYW-TIAIFTTIYLAGLTGI 153 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD----~~~GR~~-~~~i~~~l~~~g~~~~ 153 (549)
+...+.......+++.|+++.+|+++...+.+..+..+..++.-++.|.++| |+ |||| .++++.++..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4555555556678899999999999999999999999999999999999999 65 8665 4556777777777766
Q ss_pred HHh-hhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 154 TLC-ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
... .. ... .......+++..++..++......+..++++|+.++.++ |.+..+
T Consensus 90 f~~~p~--~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~ 143 (428)
T PF13347_consen 90 FSPPPA--GLS-------------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSS 143 (428)
T ss_pred hccccc--hhh-------------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHH
Confidence 643 10 000 002334456666677899999999999999999986542 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~-------~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
+-.....+|..+...+.+.+.+. .+|++..++.++..++..++.++..|+
T Consensus 144 ~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 87777777776565555554422 168888887777766666666555444
No 125
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.34 E-value=5e-11 Score=125.61 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~ 155 (549)
++..+....+...++.|+.+..+.... ..+.+...+.++..++.++.|+++||+ |||+++.++..+..++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 333444444556677887765443322 234455566677788888999999997 9999999888877766665544
Q ss_pred hhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHH
Q 008896 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (549)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (549)
. .+.+.+++.+++.|++.+...+.....+.+..|++. |++.+++++
T Consensus 308 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 353 (408)
T PRK09874 308 V----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ 353 (408)
T ss_pred h----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence 3 245567778889999999999999999889888887 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 236 ~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
....+|..+||.++|++.+..||++.|++.+++.+++.++.+.
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877776665544
No 126
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.33 E-value=4.7e-11 Score=129.47 Aligned_cols=150 Identities=16% Similarity=0.119 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 008896 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 87 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (549)
.+..++|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567889999889999999999999999999999999999999997 9999988877665555443322100
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008896 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p 246 (549)
.+.+.+.+..++.++...+..+..+.++.|.+|++. |++.+++++....+|..+||
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence 233334444444444444455677788899999888 99999999999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHH
Q 008896 247 TLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
.++|++.+..||+..+.+.++..
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999998876555443
No 127
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.33 E-value=8.2e-11 Score=122.20 Aligned_cols=180 Identities=12% Similarity=0.000 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~-~~i~~~l~~ 147 (549)
+..+...+..++.....+.+..+++.|+.+.+|.+..+.+.+.....++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3566677777888888888888999999999999999999999999999999999999999997 98861 111111111
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+...+........ .+.. ..+..++.+.+..+..+...++.+|.+|+++ |
T Consensus 294 ~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFATNYV---------------------NIPY-AALALVALGFFGLGAGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHhccc---------------------hhHH-HHHHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence 2211111110000000 1222 2333333344444478899999999999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (549)
++.+++++...++|..++|.+.+++.+..| |++.|++.++..+++.++.+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 99999887777666655543
No 128
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.33 E-value=8.7e-11 Score=123.96 Aligned_cols=169 Identities=10% Similarity=-0.001 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.+....++.....+.+..+++.|+.+ .|++..+.+.....+.++..++.++.|+++||+ |||+.+.++.+...++.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 301 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAA 301 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 33344445555666677788888864 799999999999999999999999999999997 9999988866655555544
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+... .+...+.+..++.|++.++..+...++..|.+|+++ |++.++
T Consensus 302 ~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 347 (406)
T PRK11551 302 LAAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVG 347 (406)
T ss_pred HHhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhh
Confidence 4332 234445566677888887888888999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (549)
+++....+|..++|.++|++.++.+ |...+++...+.+++.++.+
T Consensus 348 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 348 AAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654 55566555555544444433
No 129
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.33 E-value=6.9e-11 Score=126.24 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G--R~~~~~i~~~l~~ 147 (549)
.++.+.+..++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |++...+..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 45555566666666777788899999988999999999999999999999999999999999732 2332222221112
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..+.+... +. .+.....+..++.|++..+.........+|.+|++. |
T Consensus 324 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLM-------PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHc-------cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 222111111 00 122223333344454443333344556789998877 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++..++.+...++|..++|.+.+++.+..||+..|++.+++.+++.+..+..
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF 423 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877766665554443
No 130
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.32 E-value=9.5e-12 Score=109.55 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHH
Q 008896 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (549)
Q Consensus 113 ~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (549)
.+.++..++.++.|+++||+ |||+.+.++..+..++.+.+... .+...+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 56 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLII 56 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHHH
Confidence 45567788899999999997 99999999988888887776654 35667788
Q ss_pred HHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
.+++.|++.+...+....+..|.+|+++ |++..++.+....+|..++|.+.+++.+..+|++.|++..+...+.
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 9999999999999999999999999999899999998877766655
Q ss_pred HHHHHh
Q 008896 273 NMLFFI 278 (549)
Q Consensus 273 ~~~~~~ 278 (549)
.+....
T Consensus 131 ~~~~~~ 136 (141)
T TIGR00880 131 FILLAF 136 (141)
T ss_pred HHHHhh
Confidence 555444
No 131
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.32 E-value=2e-10 Score=121.08 Aligned_cols=178 Identities=15% Similarity=0.041 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++..++++++..+++.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 34555555666677888888999999975 899999999999999999999999999999996 9999998888777776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~ 228 (549)
..++... + .+...+ ..++.|++.++..+.......|.+++ ++ |+
T Consensus 284 ~~~~~~~-------~--------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g 328 (393)
T PRK09705 284 FCGFIWL-------P--------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AG 328 (393)
T ss_pred HHHHHHc-------c--------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HH
Confidence 6554432 0 111112 22456788888878777777788764 44 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhccccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYR 284 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (549)
+.+++.+...+++..++|.+.|++.+..| |...|++.+++.++..+..+...++.+
T Consensus 329 ~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 329 KLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999886 788888877776666665555544433
No 132
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.32 E-value=3.6e-11 Score=125.20 Aligned_cols=169 Identities=14% Similarity=0.058 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+......++.....+.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3466666677777778888888899999889999999999888889999999999999999997 999987765554443
Q ss_pred HH-HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 149 GL-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 149 g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
.. ........ . .+...+++..++.+++.+...+...+.++|.+|++. |
T Consensus 298 ~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 346 (394)
T TIGR00883 298 LAVPLLMALLD------S-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------R 346 (394)
T ss_pred HHHHHHHHHhc------C-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------e
Confidence 32 22111100 0 234556667778888888888999999999999988 8
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHH
Q 008896 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (549)
Q Consensus 228 ~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~ 269 (549)
++++++ +..+..+|..++|.+++++.++.| |++.++..+++.
T Consensus 347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 888887 556677899999999999999888 887766555443
No 133
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.31 E-value=8.9e-11 Score=124.79 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
..++..++..........+.+.|+.+ .|.+ ....+...++..+...++.++.|+++||+ |||+++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~ 289 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV 289 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 34444444444444455666778754 4543 35567888888888899999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++..++..... ...+...+++..++.|++.+...+....+++|.+|++.
T Consensus 290 ~~~v~~~l~~~~~~------------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~---- 341 (418)
T TIGR00889 290 AWALRFGFFAYGDP------------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI---- 341 (418)
T ss_pred HHHHHHHHHHHcCc------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----
Confidence 88887766654210 00134556778889999998888888999999999988
Q ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 225 THLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 225 ~~r~~~~~~~~-~~~~ig~~i~p~i~~~l~~~------~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
|++.+++++ ....+|..+||+++|++.++ .||++.|.+.+++.++..+++++..+
T Consensus 342 --~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 --RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987 56789999999999999887 46999998887776666555554443
No 134
>PRK03545 putative arabinose transporter; Provisional
Probab=99.30 E-value=2.6e-10 Score=119.84 Aligned_cols=172 Identities=15% Similarity=-0.040 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+...+..++.....++...++++|+.+.+|.+..+++.+.+.+.++..++.++.|+++||+ |||+. .++..+..++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~ 285 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLL 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHH
Confidence 3344444555555566667788899888999999999999999999999999999999997 98765 444444434333
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+.... .+...+++..++.|++.+...+.....+.+..| +. |++++
T Consensus 286 ~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~ 331 (390)
T PRK03545 286 LLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAM 331 (390)
T ss_pred HHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHH
Confidence 322110 245566677778888887777777777777766 45 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++++....+|..+||.++|++.++.|++..|++.+++..+++++....
T Consensus 332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 999888999999999999999999999999998888777766665543
No 135
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.30 E-value=1.2e-08 Score=109.75 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=52.1
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHH
Q 008896 439 LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF 518 (549)
Q Consensus 439 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~ 518 (549)
=++..++.|++..+...|++.++.-...++||++++.+.+.|| +..+-++.+.++.+++++++
T Consensus 402 Rs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-----------------~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 402 RSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-----------------SQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CchhHHHHHHHHHHHHHHHH
Confidence 3455688999999999999999999999999999999999886 12355666777777776665
Q ss_pred H
Q 008896 519 L 519 (549)
Q Consensus 519 ~ 519 (549)
+
T Consensus 465 ~ 465 (477)
T PF11700_consen 465 F 465 (477)
T ss_pred h
Confidence 3
No 136
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.30 E-value=7.4e-11 Score=123.71 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=127.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++|..........++..+....+..+++.|+.+++|++..+.+.+.....++..++.++.|+++||+ |||+.+.++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence 3444444444444444555556677889999999999999999999999999999999999999997 999998887765
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+..+..... . .+...+.++.++.+++.++..+..++++.|.+|++.
T Consensus 314 ~~~~~~~~~~~-~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAI-G--------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHh-C--------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 53322222111 0 234455566677777777777888899999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i 264 (549)
|++.+++.+...++|..++|.+.|++.++.| |+..|..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999988 8776654
No 137
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.30 E-value=3e-11 Score=128.33 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 87 GLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 87 ~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
.....++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++||+ |||+.+.++.++..++.+++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~------- 312 (420)
T PRK09528 241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA------- 312 (420)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc-------
Confidence 34445677776543 55666778888888888889999999999997 99999999888888877776654
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH-HHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGA 242 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~~ig~ 242 (549)
.+.+.+++.+++.+++.+...+....++.|.+|++. |++..+. ++....+|.
T Consensus 313 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 313 ---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGA 365 (420)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHH
Confidence 355667778888888888877788889999999877 7777655 677788999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 243 ~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++|.++|++.+..||+..|.+.++..++..++.+.
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877766555544443
No 138
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.29 E-value=1.3e-10 Score=123.32 Aligned_cols=162 Identities=12% Similarity=-0.027 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008896 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (549)
Q Consensus 86 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~ 165 (549)
+++..+++.|+++.+|.+..+.+++.+.+.++..++.++.++++||. ++++++.++.++..++.+++.+.
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---------
Confidence 45667788999888999999999999999999999999999999985 77888888887777776665543
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
.+.....++.++.|++.+...+...+++.|.+|++. |++.+++++....+|..+|
T Consensus 310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g 364 (417)
T PRK10489 310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIG 364 (417)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHH
Confidence 345556677778888888777788889999999888 9999999999999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
|.+.|++.+..|++..+++.++...+..++.....++
T Consensus 365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998888877666555544444443333
No 139
>PRK15075 citrate-proton symporter; Provisional
Probab=99.28 E-value=1.8e-10 Score=123.07 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|+.........++....++.+..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+++.++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~ 314 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA 314 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 343333334444556667778888999999988999998888888888888899999999999997 9999887765443
Q ss_pred HHHHH-HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 LAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+... ....... . .+...+.+..++.+++.+...+....+..|.+|++.
T Consensus 315 ~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 315 ILTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 32211 1111100 0 122233344445566666666667788899999998
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHhhccchH
Q 008896 226 HLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG 259 (549)
Q Consensus 226 ~r~~~~~~~-~~~~~ig~~i~p~i~~~l~~~~gw~ 259 (549)
|++++++. .++..+++.++|.+.+++.+..|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99999984 4455566888999999999988854
No 140
>PRK12382 putative transporter; Provisional
Probab=99.27 E-value=1.7e-10 Score=121.35 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 008896 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~ 159 (549)
+..+.+..+..+.+.|+.+ .|++. .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc---
Confidence 3344555566677778754 56553 45556667778888999999999997 99999999888888877665543
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHH
Q 008896 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+...++++.++.|++.+...+.......|.+|+++ |++.+++++....
T Consensus 300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 244556677888899988888888888899999888 9999999999999
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 240 ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+|..++|.+.+++.++.||++.|.+.+++.+++.++.+.
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888877776665544
No 141
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.27 E-value=4.7e-10 Score=117.73 Aligned_cols=169 Identities=9% Similarity=-0.076 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+...+..++...+.+...++.++|+++ +|.+..+.+.......++..++.++.+++.||+ |+|+++.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 355666667777777787888899999964 899999999988888889999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
..++++.+ .+.+.+++..++.|+..+...+....++.+. |+++ |+
T Consensus 283 ~~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~ 327 (382)
T TIGR00902 283 RWAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IA 327 (382)
T ss_pred HHHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HH
Confidence 88877664 5677788889999999999999999999987 8777 88
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 229 ~~~~~~~-~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~ 275 (549)
++.++++ ....+|..++|.++|++.++.|+ ..|++.++..++++++
T Consensus 328 ~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 328 KLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 8899876 46789999999999999999986 5676666665555444
No 142
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.27 E-value=4.6e-10 Score=118.64 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-HHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~-i~~~l~~~ 148 (549)
..+...+..++....+++..+++|.|++ ++|++..+.+.+...+.++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 4455556677777888888889998885 5899999998888888999999999999999997 9888664 22222333
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+..... ... .+....++..++.|++.+...+ ......|..| ++ |+
T Consensus 301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hH
Confidence 2222222100 000 2344556667777877776544 3455666544 46 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.+++++....+|..++|.+++++.+..||+..|++.+++.+++.++..+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777666655444
No 143
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.26 E-value=4.4e-10 Score=117.83 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
+.+.....+++.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+++.++..+..++.+... .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3444455677888864 699998999888888899999999999999997 999999888877777654432 1
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
.......+++.|++.+...|...+...|..|+++ ++...+.++...++|.
T Consensus 285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 0123345666777777778888888899988766 7777778888889999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 008896 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 243 ~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~ 275 (549)
.+||.++|++.++.||++.|.+.+.+.++..+.
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877766555433
No 144
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.24 E-value=2.6e-10 Score=121.82 Aligned_cols=189 Identities=13% Similarity=0.001 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
++..+..++..+......+.+..+ .+++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~ 360 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMA 360 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 333334444444433333333344 4555567899988888888888889999999999999997 99999999988877
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+...... +. .....+...+....++.+....+..+....+.+|.+|++. |
T Consensus 361 ~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~ 417 (481)
T TIGR00879 361 ICLFVLGILGASFV--TG---------------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------R 417 (481)
T ss_pred HHHHHHHHHhhccc--CC---------------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------H
Confidence 77766653211000 00 0000122222222333333333344666777899999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++..++.+...++|+.++|.+.+++.++.||++.|++.+++.+++.++.++..+
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 999999999999999999999999999899999998887776666665544433
No 145
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.24 E-value=7e-10 Score=119.19 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH--HHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTI 145 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~--~~~~i~~~l 145 (549)
.|.+...++..++.+-+...+......|.++++|++..+...+..+..+..++|.+++|++.||+ |-| ++++++.++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 35666777777888888888999999999999999999988888888999999999999999997 988 888888776
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.+..+.-.+. ..+..... .+.+.+++.-++.|++.|+.++..-++.+++.|+++
T Consensus 359 ~~~i~~~g~~G-~~~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----- 413 (477)
T PF11700_consen 359 WIIIPLYGLFG-FWPSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----- 413 (477)
T ss_pred HHHHHHHHHHH-hhhcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-----
Confidence 64322221110 00000000 345667777789999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+.+|++|.+..-..+.+||++.+.+.+.+| -|+++....++.++++++++.
T Consensus 414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999887 888988777777777766544
No 146
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.23 E-value=7.7e-10 Score=120.08 Aligned_cols=172 Identities=10% Similarity=0.070 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~-~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
.++..+..+....+.++|+.+++|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..++.+.+.+.
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556667888988889999999998874 55678999999999999997 99998877766555544333221
Q ss_pred hhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH
Q 008896 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (549)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (549)
... + .+...+.+..++..++.|...+...++..+..+++. +++.+++.+.
T Consensus 310 ~~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s 359 (491)
T PRK11010 310 SIT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA 359 (491)
T ss_pred Hhc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence 110 0 123334444555444455555666788888888888 7888999998
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 237 ~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
..++|..+++.++|++.+..||+..|.+.+++.++++++....+
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999888888777776665543
No 147
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.23 E-value=6.9e-10 Score=118.47 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
..++....+|++..++|.|+.+.+|++..+.+...++..++..++.++.|+++||+ |||+++.++.++..+..+.....
T Consensus 251 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 251 FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 33444677888899999999999999988888877777777778888899999997 99998877665443333222111
Q ss_pred hhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH
Q 008896 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (549)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (549)
.. .. .+....+....+..++.+...+....+.+|.+|++. |++++++.+.
T Consensus 330 ~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~ 379 (432)
T PRK10406 330 LQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYA 379 (432)
T ss_pred HH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHH
Confidence 00 00 111111222222223333334556778899999999 9999999665
Q ss_pred H-HHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 237 S-VTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 237 ~-~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
. ..+++..+|.+.+++. ..| |...+++.++..+++.+..++
T Consensus 380 ~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 380 VANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4 4454556888888664 445 555555555555555444433
No 148
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.6e-09 Score=111.83 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++...+..++...+.|..++++-+++++..|++....++++..|.++..++.+++|+++|| +.++++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 367888888999999999999999999999999999999999999999999999999999997 888888888777777
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
..+.+.+.. .+....++..++.|+..+........-.++ ..++. +.
T Consensus 289 ~~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~ 334 (394)
T COG2814 289 ALLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------AD 334 (394)
T ss_pred HHHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hH
Confidence 777666542 244555666666777777666666666666 33444 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
.+.+++....|+|..+|..++|.+.++.|+....++.++..+++.++.+...+..
T Consensus 335 ~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 335 LAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999998888888776654443
No 149
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.20 E-value=3.4e-10 Score=121.05 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH-
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA- 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~- 148 (549)
.++.+.+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455666666666777788889999999998999999999988889999999999999999997 644322233222222
Q ss_pred --HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 149 --GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 149 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+.+.+... +. .+.....+..++.|++..+..........|.+|++.
T Consensus 331 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 378 (438)
T TIGR00712 331 TIAVIVYWMN-------PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 378 (438)
T ss_pred HHHHHHHHhc-------CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------
Confidence 11111111 00 122233344455555444433333456779999888
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~-~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|+++.++++...++|+ .++|.+.|++.++.||.++|++.++..+++.+..++..
T Consensus 379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877774 68999999999999999999887776666655555443
No 150
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.20 E-value=3e-10 Score=122.15 Aligned_cols=171 Identities=7% Similarity=-0.019 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHHHHH--
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIY-- 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~-~GR~~~~~i~~~l~-- 146 (549)
.++...+..++..++++....+++.|+. ++|++..+++.+.++..++..++.+++|+++||. +++++...+...+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 4556666667777777778888899986 4799999999999999999999999999999974 24444444333222
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++... .+.+.+++.+++.|++.++..++..+.+.|.+|+++
T Consensus 321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------ 366 (455)
T TIGR00892 321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------ 366 (455)
T ss_pred HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence 2333333222 356667788889999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNML 275 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-gw~~~f~i~~~~~~i~~~~ 275 (549)
+++.+++++...++|..+||.++|++.+.. +|++.|++.++..+++.+.
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999999999999999999999998877 4999999887766655543
No 151
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.19 E-value=9.5e-10 Score=115.96 Aligned_cols=191 Identities=13% Similarity=0.037 Sum_probs=142.9
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-HHH
Q 008896 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT 138 (549)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR-~~~ 138 (549)
....+.+||.+++..+..++..+.++.+.+..-+|+++ +.+-+.+..|++++...++..++.+..|+.+-|. |. |+-
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P 104 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP 104 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence 34556789999999999999999888777777789865 4667778889999999999999999999999987 74 666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 ~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
++.+.++.++|.++....... |+ .....++++|++.|+|.|.. +..=++++|-...
T Consensus 105 li~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence 788888999999888433221 11 25788999999999997764 6667888998777
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----c---------cchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----E---------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~----~---------~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
++ |.++++....+..+|..+||.+...+.. . .-+..+-|+.++..++.+++..+..++
T Consensus 161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 77 8888888777666676667666544421 1 114456667777666666655554444
No 152
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.19 E-value=7.3e-10 Score=119.87 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-----HHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI 145 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-----~~~i~~~l 145 (549)
.|.+.+..++.....+.+..+++.|+.+++|++..+++...+++.++..++.+++|+++||+ |||+ ........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444555556677889999989999999999999999999999999999999997 8752 22211111
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+.+...+.+... .+.....+..++.+++.++..+...++..+..| +.
T Consensus 333 ~l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~----- 380 (476)
T PLN00028 333 TLGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS----- 380 (476)
T ss_pred HHHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence 1111111111100 233334444555566555555555566666544 44
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|+...++.+.+.++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888888887777777777776543 22334699999988877777766665544
No 153
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.18 E-value=1.4e-09 Score=110.96 Aligned_cols=164 Identities=10% Similarity=-0.001 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+..+...+..|+...+--++..+++.|+.+. +|+++.+++...+.+.++..++.+++++++||+ |++|++.++..+
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l 217 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL 217 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 34555555555555555667788999999854 799999999999999999999999999999997 999998888877
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+++.++.... .+. ....+.++.|++.+..+|...+...+.+|++.
T Consensus 218 ~~~~~~l~~~~----------------------------~~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~----- 263 (310)
T TIGR01272 218 AVLLSIGAALT----------------------------HGY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT----- 263 (310)
T ss_pred HHHHHHHHHHc----------------------------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----
Confidence 77766544432 111 12335557899999999999999999888643
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
+.+.++. ....+|+.+.|.+.|++.+..|.+++|+++.++.
T Consensus 264 --~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 264 --SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred --hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 2333343 4566899999999999999999999888655543
No 154
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.16 E-value=3.5e-10 Score=117.14 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH--HHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT--TIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~--~l~~ 147 (549)
.++.+.+..++.....+++..+++.|+.+.+|.+..+++...+.+.++..++.++.|+++||..+||+...... .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45666666777777777788889999999999999999999999999999999999999998634444332211 1112
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++....... +. .+.....+..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 222221111 00 234445556666777666666777788899999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f 262 (549)
++..++++....+|..++|.+.|++.+..||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998764
No 155
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.14 E-value=3.2e-09 Score=112.77 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 84 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
..+.+..+++.|+.+ .|.+..+.+...+...++..++.+++|+++||+ |||+++.++.++..++.+++.....
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 344466778888875 699988888888888899999999999999997 9999998888776665544432200
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (549)
.+...+.+..+..+++..+..+..+.++.|.+|++. |++++++.+....+|+.
T Consensus 319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 112222222223333334445667788899999888 99999999888899999
Q ss_pred HHHHHHHHHhhccchHHHHHHHH
Q 008896 244 VAFTLVVYIQMEHGWGSAFGALA 266 (549)
Q Consensus 244 i~p~i~~~l~~~~gw~~~f~i~~ 266 (549)
++|.+.+++.+..|+....++..
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~~~ 394 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTFIV 394 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999999888765544433
No 156
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.12 E-value=1.2e-09 Score=115.90 Aligned_cols=164 Identities=9% Similarity=-0.081 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~-~~i~~~l~~ 147 (549)
..+...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +.+..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 56667777788888888999999999976 2467888888888999999999999999999997 86664 333333333
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.++. .. . .+....+.+..+.++|.....+.......|.+|++. |
T Consensus 322 ~~~~~~-~~-~--------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~ 367 (412)
T TIGR02332 322 AGWLLA-SA-T--------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R 367 (412)
T ss_pred HHHHHH-Hh-c--------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence 332211 11 0 011111222223333333333444455567788877 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~ 268 (549)
++++++.+...++|..++|.+.+.+.+..| |+++|++.++.
T Consensus 368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999999875 99998876554
No 157
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.12 E-value=7.9e-09 Score=109.20 Aligned_cols=171 Identities=11% Similarity=-0.107 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
++...+..++.....+......+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 34444444444444555556678888888999998888877777778889999999999997 99999999888887777
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++.+.... .+ .+...++++.++.|+|.+...+.......+. ++++ |++.
T Consensus 296 ~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~ 345 (406)
T PRK15402 296 LLAALATVI---SS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTV 345 (406)
T ss_pred HHHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHH
Confidence 776654210 00 2455567778888888887766665554433 3355 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
.+.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999988888766555544444443
No 158
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.11 E-value=2.4e-09 Score=109.61 Aligned_cols=181 Identities=13% Similarity=-0.015 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..|.+++..+...-++-++..+++.|++++++.++.+++.....+.+...+..++||+||||+ |.+|+..+....+++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 4678888888888888888999999999999999999999999999999999999999999998 988888888888877
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..+..+...... | ..+...+++..+.+++..|.-...+...+...|+.+ -+
T Consensus 297 ~~~~l~~~~~~~~-----------~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G 348 (417)
T COG2223 297 AAALLSLFLTGFG-----------H----------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TG 348 (417)
T ss_pred HHHHHHccccccc-----------c----------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hh
Confidence 7777665421000 0 023333444444444445554555566666666653 57
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
...++.....++|+..-|...+...+.+| +...|++...+.+++.++.+.
T Consensus 349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999999999999888 889999888777777665544
No 159
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.10 E-value=2.1e-09 Score=103.77 Aligned_cols=170 Identities=18% Similarity=0.113 Sum_probs=134.2
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 008896 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
..........+|.+..+.++..++.+-..+-.+.+.++.+|+|...++.+.+...+..++..++.|.++|++ ||+-...
T Consensus 256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv 334 (459)
T KOG4686|consen 256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV 334 (459)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence 333334445788888888888888888888889999999999999999999999999999999999999997 9997766
Q ss_pred HHHHH-HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 141 IFTTI-YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 141 i~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.+..+ .+++-.+++++ ...-+++..++|+..........+.++-..|++
T Consensus 335 ~~a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred HHHHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 65544 44455555553 222466777888888777666788888888988
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHH
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAI 267 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~~f~i~~~ 267 (549)
+ .|++++..+...|+|-++.|++++++.+.-| |--.|.+...
T Consensus 385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 8 9999999999999999999999999988765 4334544433
No 160
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.09 E-value=5.1e-08 Score=102.76 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHH-HHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTI 145 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~-~~~i~~~l 145 (549)
.-+.-.+..+...+.+-.+..++..|.++.+|++...++.+..+.-+.-++.-|+.|.++||. +||+| -++.+.+.
T Consensus 13 eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip 92 (467)
T COG2211 13 EKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP 92 (467)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence 334445556666677767788999999999999999999999999999999999999999985 68665 55566677
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.+..+++..+.. . + ...+....++.-++.+++...+.-...++.+++.++.++
T Consensus 93 ~~i~~~l~F~~p~---~------~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E---- 146 (467)
T COG2211 93 FAIVAVLLFITPD---F------S-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE---- 146 (467)
T ss_pred HHHHHHHHHcCCC---c------c-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH----
Confidence 7777777776521 0 0 013445556667788999999999999999999886553
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|.+..++.....++|..+...+.+.+.. ..||+..-++.+++..+..+++++.
T Consensus 147 -R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~ 206 (467)
T COG2211 147 -RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFN 206 (467)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888887776666655543 3456666555555555555555443
No 161
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.09 E-value=3e-09 Score=109.67 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+...+..++....++... ...+.|+++.+|.+..+.+.......++..++.++.++++||+ ||++.+.++..+..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4445555555555665555 5667777777999999999999999999999999999999997 9999988877666666
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..+..... .+.+.+++..++.|++.+...+...+++.|.+|+++ |++
T Consensus 291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 55554430 125667778889999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+++++...++|..++|.++|++.+..|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
No 162
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.08 E-value=9.1e-09 Score=107.94 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+......++.....+....++++|+.+.+|.++.+.+...+...++..++.++.|+++||+ ||++.+.++..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence 3344444444444445556678888888999999999999999999999999999999997 999999888887777765
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhh-cccCCCCChhhhhhhhhH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG-ADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-ad~~~~~~~~~~~~r~~~ 230 (549)
++.... .+.....+..++.+++..+..+...... .+..+.+. ++..
T Consensus 281 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~ 327 (382)
T PRK10091 281 MLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA 327 (382)
T ss_pred HHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence 544321 1223344444555555544444333333 33333333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
..+....+|..+||.++|++.+. .+|++.+.+.++...+.+....
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 33556789999999999999885 6899999887766555544443
No 163
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.07 E-value=1.2e-08 Score=107.15 Aligned_cols=165 Identities=7% Similarity=-0.095 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++....+......++.|+. +.|.+..+.+...+...++..+..++.|++.||+ |+++.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 4555555556556666666777888985 5899998889888888888888889999999997 9999999888888877
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++... .+.+.+++..++.|++.+...+....+..+. ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 7666543 4567778888889999888888888877775 4444 677
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~-~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
..+++. ....+|..+||.++|++.+..|+. .|++.++..+++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 777765 556788899999999999998873 555544444433
No 164
>PRK10504 putative transporter; Provisional
Probab=99.06 E-value=9.4e-09 Score=110.85 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+...++..++..+++.......+.|++..+|.+..++++......++..++.++.|+++||+ |||+++.++..+..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 344555566666666655555667777778999999999888888888888888999999997 9999999888877777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.+... . .+...+.+..++.|++.+...+....+..+.+|++. ++.
T Consensus 341 ~~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 389 (471)
T PRK10504 341 SLLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASS 389 (471)
T ss_pred HHHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccc
Confidence 665554210 0 223334455667788888888888899999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
.++++++...+|..+|+.+++.+.+..|+
T Consensus 390 ~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 390 GNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999988776655
No 165
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.05 E-value=1e-08 Score=110.40 Aligned_cols=179 Identities=17% Similarity=0.079 Sum_probs=123.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-------
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------- 139 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~------- 139 (549)
+++.++.+.+..++....++.+..++|.|+.+.+|++..+++...++..++..++.+++|+++||+ ++|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~ 337 (465)
T TIGR00894 259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK 337 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence 455788888888999999999999999999999999999999999999999999999999999986 543211
Q ss_pred -HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 140 -~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 392 (465)
T TIGR00894 338 IFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR 392 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence 1111111111111111100 0 1223333444444555555555555555566654
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHHh
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~---gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
. ++...++.+...++|+.++|.+.+++.+.. +|..+|.+.++..+++.++..+
T Consensus 393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 4 899999999999999999999999987643 4888888877776666655443
No 166
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.05 E-value=7.3e-09 Score=109.12 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
...+..++....+.....+.+.|+.+.+ +.+....+...++..+...++.++.|++.||+ |||+.+.++.++..++
T Consensus 219 ~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~ 297 (396)
T TIGR00882 219 MFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVR 297 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHH
Confidence 3333444444444444456778887765 44555667777777788888889999999997 9999999988888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..+.... .+...+++..++.|++..........+..+.++++. +++
T Consensus 298 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at 343 (396)
T TIGR00882 298 IIGSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SAT 343 (396)
T ss_pred HHHHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEE
Confidence 7665543 355666777888888876665566667777777776 777
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 230 ~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
..+. ++....+|..+++.++|++.+..||+.+|.+.+++.++..++.
T Consensus 344 ~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 344 IYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred eehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 6666 6778899999999999999999999999998877766655543
No 167
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.05 E-value=1.4e-08 Score=106.77 Aligned_cols=174 Identities=7% Similarity=-0.093 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..+...++...+......+.++|+.+ .|++..+.+.+..... ....++.+++|+++||+ |+|+++.++..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3444445556666666666777888865 7999999998887765 46667788999999997 9999988877665333
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~ 228 (549)
.+....... .... .+...++....+.+++.+...+...+...+..++ +. ++
T Consensus 288 ~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g 339 (390)
T TIGR02718 288 ALLWFAQAA-FWLA---------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AG 339 (390)
T ss_pred HHHHHHHHH-cccC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hH
Confidence 222221110 0000 1222333444445566666667777777677665 55 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~ 274 (549)
+.+++++...++|..++|.++|++.+..||+..|++.+++.+++.+
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877766555443
No 168
>TIGR00895 2A0115 benzoate transport.
Probab=99.03 E-value=6.6e-09 Score=108.40 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
++..+.+.+..++....++.+..+++ ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+.......+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence 34445555556666677777777776 77778999999999999999999999999999999997 99855444333333
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..++.... .+...+++..++.|++.++..+...++.+|.+|++. |
T Consensus 327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 372 (398)
T TIGR00895 327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R 372 (398)
T ss_pred HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence 332222211 234556677788999999999999999999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l 252 (549)
++.+++++....+|..++|.++|++
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999875
No 169
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.02 E-value=5.8e-09 Score=113.63 Aligned_cols=173 Identities=16% Similarity=0.092 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH------------HHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~------------~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
+.+....++..+.+|++..++|.+++ +.|++..+++. ...+..++..++.++.++++||+ |||+++
T Consensus 291 ~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l 368 (502)
T TIGR00887 291 LGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQ 368 (502)
T ss_pred HHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHH
Confidence 33334445566778888777777774 67876432211 12233445566778899999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
+++.++..++.+++.+.... .+ .+ ..+....+...++..+..+....+.+|.+|++
T Consensus 369 ~~~~~~~~~~~~~l~~~~~~---~~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~ 424 (502)
T TIGR00887 369 LMGFFILTVLFFVLGFAYNH---LS--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTR 424 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cc--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchh
Confidence 88887777766655543110 00 11 11111111222233344556677789999999
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHHH
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~----------~gw~~~f~i~~~~~~i~~~~~ 276 (549)
. |+++.++.+....+|+.++|.+.+++.+. .++...|++.++..+++.+..
T Consensus 425 ~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 425 Y------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred H------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 9 99999999999999999999999998874 334556666665555554433
No 170
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.02 E-value=1.1e-08 Score=108.98 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+++..++..++.+......+.|++..++ +..+.+.......++..++.++.++++||+ |||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 45556666666666666555555555554555 455666677777888899999999999997 9999999998888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~ 228 (549)
.+.+.+.. .+...+++..++.|++.+...+...++++|..+.++.. ..+.+|
T Consensus 301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 76665431 23455666777888999998999999999988743211 112278
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
..++++++...+|..+++.+.+++.+..||
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999877666
No 171
>PRK10133 L-fucose transporter; Provisional
Probab=99.01 E-value=1.8e-08 Score=107.82 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
..+..++.....++...+.+.|+ ++.+|+++.+++.....+.++..++.+++|+++||+ |||+++.++..+..++..+
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 34444555566666677888896 567899999999999999999999999999999997 9999998887776655544
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
..+. .+. ..+....+.|++.+...|+..+...+.++++. +.+.+
T Consensus 342 ~~~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 342 SAFA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 4332 111 12455678899999999999999999987643 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (549)
+... ..+|+.++|.+.|++.+..| -+..|+++.++.++.+....
T Consensus 386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~~ 430 (438)
T PRK10133 386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_pred HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4332 33678889999999999887 78888877766555554433
No 172
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.01 E-value=8.1e-09 Score=111.48 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++..+.+++....++.|+++.+|.+..+++.......++..++.++.|+++||+ |||+++.++..+..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 344556666677777778888899999999999999999999989999999999999999997 9999999888888777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.+... +. .+...++...++.|+|.+...+.......+.+|+++ |++
T Consensus 335 ~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~ 384 (485)
T TIGR00711 335 FYWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IAR 384 (485)
T ss_pred HHHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhH
Confidence 776653210 11 234455666788899998888777777788888877 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
+.++++...++|+.+|+.+.+.+.++.
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
No 173
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.00 E-value=2.2e-07 Score=99.23 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc--cc--hHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~--~G--R~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~ 165 (549)
.....|+++++|+++++.....++..+-..+- ++.|.++|.+ +| ||+-++++.++..++.+.+++...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~------- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA------- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 34457889999999998887776666655555 4789999986 34 555566677666555555554311
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
...+.....+..++..+|......+..+...|....+... |+...++.+....+|..++
T Consensus 82 -----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~ 140 (433)
T PF03092_consen 82 -----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVG 140 (433)
T ss_pred -----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHH
Confidence 0023444556677788899998899999999988655422 7888888888999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
..+.|++.+..++++.|.+.+++..+..+..++..+
T Consensus 141 ~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 141 SLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998887776666554444444
No 174
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.99 E-value=7.9e-07 Score=91.51 Aligned_cols=142 Identities=14% Similarity=-0.000 Sum_probs=99.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hH-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RY-WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G-----R~-~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
+..|++++....+..+.+..+... ..+..|+.||+. + || +-+..+..+...+..+.+.+...-.-.
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~------ 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES------ 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc------
Confidence 345788888877777777666544 577899999987 6 44 455566666666666655542211100
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+....+.........++..+.|+|.+...++..++.+|..|+++ |.+..++.+....+|..++..+.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011111222334455567899999999999999999999999 99999999999999999999999
Q ss_pred HHHhhccc
Q 008896 250 VYIQMEHG 257 (549)
Q Consensus 250 ~~l~~~~g 257 (549)
+.+.+.+.
T Consensus 146 g~lL~~~s 153 (403)
T PF03209_consen 146 GRLLDPFS 153 (403)
T ss_pred HHHccccC
Confidence 98877665
No 175
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.99 E-value=3.3e-08 Score=106.65 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=110.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
+++.+++|.+.....+......+...++.+++|+++||+ |||++++++.++..++.++++..... +.
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~----~~-------- 361 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYT----QA-------- 361 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhc----Cc--------
Confidence 445567898877777666667778889999999999997 99999999999888887776643110 00
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccC-cchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-- 250 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~-- 250 (549)
.. .....+.++.+++.+. ..++...+++|.+|++. |++++++.+....+|..+++.+.+
T Consensus 362 -----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 362 -----------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11 1223334444444433 34677899999999888 999999988888888877765554
Q ss_pred ----HHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 251 ----YIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 251 ----~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++.+..+|++.|++.++..+++.++.++..+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 4446788888888877665555555444333
No 176
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.6e-09 Score=103.16 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
+..+.++..|...+++ ---..+..+.+.+.++..++..++.++|..-..+.+.++|||.||.+|-|..-++-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 3333344444443333 122335566666777777788888899999999999999999999999887777777777788
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.++.-.. ....+++..+|++.|+|.-....+.+.+...+|..++ ...
T Consensus 124 qliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 877765311 0468899999999999998888889999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+++......+|..+--.+.+++.+..+
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999888888888777777777766543
No 177
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.98 E-value=4.7e-08 Score=101.87 Aligned_cols=160 Identities=11% Similarity=0.028 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
...+...+....++....+.+.|+.+++|.++.+.+.+.....++..++.+++|+++||+ |||+.+.++..+..++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~ 288 (385)
T TIGR00710 210 GYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVL 288 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 333444444555556667778888889999999999999889999999999999999997 9999998888777777666
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+...... +. .....+++..++.|++.+...+.......|..| ++ |++..+
T Consensus 289 ~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~ 338 (385)
T TIGR00710 289 LEITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASA 338 (385)
T ss_pred HHHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHH
Confidence 6543210 00 123344555667888888888888888888876 45 788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~ 263 (549)
+++.....++.+.+.+.+.+.+..+|...+.
T Consensus 339 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 339 LFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence 8777665544444444555555445544443
No 178
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.97 E-value=3.6e-08 Score=107.19 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
+++..++..+....+...+|.+..+.+|.+....+++.+.+.+|..++.++.+++.+++ ++++++..+.+++.++++.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33334444444444556678888899999999999999999999999999999999986 99999888888888877777
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
+++ .+.+..+++.++.|++.........+.+-...|++. ||+.+++
T Consensus 302 al~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 302 ALS----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred hcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 765 466777788889999998888888888889999888 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
++.....+..+|..+.|++.+..|-+..+.+.++..+++.++.+
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877766555555443
No 179
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.97 E-value=7.9e-08 Score=101.38 Aligned_cols=167 Identities=10% Similarity=-0.001 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
++...+..++.....++...+.++++.+++|++..+.+.....+.++..++.++.|++.||. +|+ .+.++..+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 44444444555555556666665555678899999999988889999999999999999984 544 4444444333332
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.++.... .+.+.+.+..++.|++.+...+...+++.+..|+ + +++.
T Consensus 296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~ 341 (394)
T PRK10213 296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKA 341 (394)
T ss_pred HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHH
Confidence 2222210 2445566677888999998888888888887763 3 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
.+++....++|..+||.++|++.+..|++..+...++...+..
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 5666677789999999999999999999888877665544433
No 180
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.96 E-value=1.6e-08 Score=109.93 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
......+..++..+.+++...+++.|+++.+|.+..+++.....+.++..++.+++|++.||+ |||+.+.++.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 445555666777777777778889999999999999999999999999999999999999997 9999988888888777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..... . .+.....+..++.|+|.|...+.......+..|+++ ++.
T Consensus 339 ~~~l~~~~~----~---------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~ 387 (495)
T PRK14995 339 FYGLAMTDF----S---------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA 387 (495)
T ss_pred HHHHHHhcC----C---------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence 766554211 0 233445667788999999988888888888899888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
+.++++...++|..+|+.+.+.+.+
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 181
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.96 E-value=2.3e-08 Score=119.66 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~-~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 33344444444445555667889999999999988 889999999999999999999999997 9999888888777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+. .+...++++.++.|++.++..+...+++.+.+|++. |++
T Consensus 313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~ 358 (1146)
T PRK08633 313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK 358 (1146)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence 6666554 345566777888999999988899999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAI 267 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~ 267 (549)
++++.++..++|..+++.+++.+.. ..++...|++.+.
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999888887776654 2345555554443
No 182
>PRK10054 putative transporter; Provisional
Probab=98.95 E-value=2e-08 Score=105.98 Aligned_cols=171 Identities=12% Similarity=-0.004 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
+...+..++..+.+.....+.+.|+... .+.+....+.....+.+......++.|++.||. |||+.+.++.++..++
T Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~ 287 (395)
T PRK10054 209 LWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIG 287 (395)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHH
Confidence 3344445555555444545666776543 344555556666666666666677889999997 9999998888888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+.. .+.+.+.++.++.++|.+...|.....+.+..|++. |++
T Consensus 288 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~ 334 (395)
T PRK10054 288 LVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS 334 (395)
T ss_pred HHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence 76665431 244556667788899988888888889999999887 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+++... ...+|..+||.++|++.++.|....|++.+++..++.++.+
T Consensus 335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 887654 55689999999999999999998888887666666665554
No 183
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.94 E-value=6.5e-08 Score=103.03 Aligned_cols=184 Identities=14% Similarity=0.021 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..|.+.+..++..-+|.++..++|.|+++.+. .........+..+...+..+++|+||||+ ||+|++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 46777777777777777777789999887663 33333334455677888899999999997 9999999998877776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC---------
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS--------- 220 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~--------- 220 (549)
..+..+.. |. ....+...+.++.+.+.++.|.-...+..++.+.||++.
T Consensus 330 ~~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 330 SALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 64433321 10 001345556665555555556666666667777776410
Q ss_pred ------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 221 ------KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 221 ------~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
...++.-+...++......+|+.+-|.+.+...+.+| +..+|++..+..++++++.+.
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0111235677777777888888899988777766654 888888777766665555443
No 184
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.94 E-value=8.7e-08 Score=101.24 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=103.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..++|+.+++|++..+.+++.... .++..++.+++|+++||+ |||+.+.++.++..+..+.+.+.... +
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~----- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P----- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence 445677788999999888877654 456788899999999997 99998887777666554443322110 0
Q ss_pred cccccccCCCCCcchhhHHHHHHHH----HHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
.+.+.++++. +..|++.+...+....++.+.+|.++ + +++.....+|..++
T Consensus 301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~ 355 (402)
T PRK11902 301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYV 355 (402)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHH
Confidence 1233333333 34556666667777777777777544 3 33333446677666
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+.++|++.+..||+..|.+.+++.++++++..
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988877766655543
No 185
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.94 E-value=1.6e-07 Score=96.98 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=118.4
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 008896 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
.+..++||..++...+..+...+..- -......|....++ +...+.+...+|+..+....+.+-|+.|++ |-|.+.+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI-~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWI-QYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchhe-eehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence 35667778666666565555544332 22344567777788 666677888999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhH--HHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM--LYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
++.++..+|..+=.++.. +.+. ... ...+.+..+.+...-.+...-.-..+-+|++
T Consensus 114 lgt~ln~iGa~Ir~iss~-p~v~---------------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~ 171 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSL-PFVP---------------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP 171 (480)
T ss_pred HHHHHHHHHHHHhhhccC-cccc---------------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc
Confidence 999999999887766532 1111 122 3566777777766666555555666788999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
++ |..+..+-.+++.+|.+++.++...+..+.
T Consensus 172 ~q------ra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 172 DQ------RAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred ch------hhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 98 999999988888888888887777665443
No 186
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.93 E-value=4.3e-08 Score=101.58 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++....++++..+++.|+++ .|.+..+.+...+.+.++..++.++.|+++||+-+||+++.++.++..++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 44555555566677777888889999865 79999999999999999999999999999999635667777777777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+... ... . ...++.|++.+...+...+...+..++++. ++.
T Consensus 277 ~~~~~~~~~--------------------------~~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~ 322 (355)
T TIGR00896 277 LCGLLFAPM--------------------------HGL--W-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAA 322 (355)
T ss_pred HHHHHHhhh--------------------------hHH--H-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHH
Confidence 766654311 111 1 234577999998888877777766554321 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+++.+...++|..++|.+.|++.++.|
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888999999999999998776
No 187
>PRK09848 glucuronide transporter; Provisional
Probab=98.93 E-value=3.2e-08 Score=106.16 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 455566666666666666666667777778888766555544444566778889999999997 9999999999888888
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~ 228 (549)
.+++.+. +. .+.+.+++..++.|+|.+...+...++.+|..|.++.+ ..+.++
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 7766543 11 34556667778899999999999999999998865421 112258
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
..++.+++...+|.++|+.+.+.+.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888899999999999999999888765554
No 188
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.92 E-value=2.6e-08 Score=102.20 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..-++..++.+=+..++.+....|...++|++..+..++.....+..+++.+++|+|.||+ |-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 555556666666666667888889999999999999999999899999999999999999996 9999999999888776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+...+. .....+.+.-.+.|+..|+.++..=++.++..|+++ -++
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 6555443 123335555568899999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~ 276 (549)
+|++|.+....+..+||...+.+.+.+| -|.++....+...++++++
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 9999999999999999999998888765 5666655555444444443
No 189
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.92 E-value=4.5e-08 Score=103.45 Aligned_cols=151 Identities=11% Similarity=0.018 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
....+|.|+++..| ++.+.+...+...++...+....+++.|+.++.++.+..+.++..++.+++...
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 44567888876655 566777776666555554444456666654476677777777777776666544
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+...+.+..++.+++.+...+...+...|..|++. |++.+++++....+|..+||.
T Consensus 295 -----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~ 351 (400)
T PRK11646 295 -----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI 351 (400)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence 234445556667788888888888999999999988 999999999999999999999
Q ss_pred HHHHHhhccc----hHHHHHHHHHHHHHHH
Q 008896 248 LVVYIQMEHG----WGSAFGALAIAMGISN 273 (549)
Q Consensus 248 i~~~l~~~~g----w~~~f~i~~~~~~i~~ 273 (549)
++|++.+..+ ....+++..+..++..
T Consensus 352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 352 GGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred chHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 9999988642 2344444444433333
No 190
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=3.1e-07 Score=101.02 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=149.2
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 69 IAALFIF-GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~~~-~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
+.+..++ +..+...+.. +......+-+.+.++++..+.+++.+.+-++..+...+..+..-|. =|-|.+-++.+++.
T Consensus 96 k~fl~~l~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG 173 (735)
T ss_pred chHHHHHHHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence 3343333 4444455544 7777788999999999999999999999999999999999999985 67788899999999
Q ss_pred HHHHHHHHhhhhccc------C---CCCC--------ccccc----ccccCCCC--Ccchh-hHHHHHHHHHHHHHhccC
Q 008896 148 AGLTGITLCATMKVF------M---PNQD--------NCDRI----SQLLGSCE--PAKSW-QMLYLYTVLYITGFGAAG 203 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~------~---~~~~--------~~~~~----~~~~~~~~--~~~~~-~~~~~~~~~~l~g~g~g~ 203 (549)
+|.+++++.-+...- . +.+. .|+.. ++..++|. ..... -..+++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 999988764111000 0 0000 00000 00111222 12222 234677889999999999
Q ss_pred cchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------------------ccc-hHHHHHH
Q 008896 204 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EHG-WGSAFGA 264 (549)
Q Consensus 204 ~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~------------------~~g-w~~~f~i 264 (549)
+++...+|+=|-...++ -...+++++....+|+++|.++++++.+ +.| |+.+|.+
T Consensus 254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999999888887 7888999999999999999999988753 123 8889998
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 008896 265 LAIAMGISNMLFFIGTPLYR 284 (549)
Q Consensus 265 ~~~~~~i~~~~~~~~~~~~~ 284 (549)
.+.+.++..+.+++..+..+
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHhCcccCc
Confidence 88888877777776655443
No 191
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.87 E-value=1.4e-07 Score=98.67 Aligned_cols=166 Identities=10% Similarity=-0.038 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH---HHHHH-HHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~---~~~~i-~~~ 144 (549)
+..|.+.+..++....+|++..++|+|+++ .|++.. .+....+...... +..++++||. .|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 356778888999999999999999999964 678764 4444444444333 3457888886 543 33222 332
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..+....+... .+....++...+.+++..+..+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---- 313 (368)
T TIGR00903 266 LIAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---- 313 (368)
T ss_pred HHHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence 222222222221 112233444555667777777888899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
|+++.++.+...++|+.++|.+.+.+.. |....|.+.++..+++.+..
T Consensus 314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987773 66667766665555554443
No 192
>TIGR00898 2A0119 cation transport protein.
Probab=98.87 E-value=4.5e-08 Score=106.55 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHH
Q 008896 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191 (549)
Q Consensus 112 ~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (549)
.+..+...++.+++++++||+ |||+++.++.++..++.+++.+... ......+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~ 414 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRT 414 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHH
Confidence 344566677888999999997 9999999998887777666554311 1123334
Q ss_pred HHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 008896 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i 271 (549)
+..++.+++.++..+....+.+|.+|++. |++++++.+....+|+.++|.+.+ +. ..++..++++.++..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~ 486 (505)
T TIGR00898 415 ALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALL 486 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHH
Confidence 44455566667777888899999999988 999999999999999999999988 43 45566677766666555
Q ss_pred HHHHHHh
Q 008896 272 SNMLFFI 278 (549)
Q Consensus 272 ~~~~~~~ 278 (549)
+.++.++
T Consensus 487 ~~~~~~~ 493 (505)
T TIGR00898 487 AGILTLF 493 (505)
T ss_pred HHHHHHc
Confidence 5554443
No 193
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.85 E-value=6.3e-08 Score=115.96 Aligned_cols=184 Identities=7% Similarity=-0.165 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++..+.++.+.++++.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+.++.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 455555555666666667778899999999999999999999999999999999999999886 6666555555555444
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+........+.+ .+. ..+-. ...+.+.++++.++.|++.+...+...+++.+.+|++. ||+
T Consensus 305 ~~~l~~~~~~~~~~~~~-~~~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASSSVPAEPAQ-LKS------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhccccccccccc-ccc------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 44333210000000000 000 00000 00234566777888999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~~ 268 (549)
.++.++....+|..+++++++.+.+ ..++...|++.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999998874 44666666554443
No 194
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.85 E-value=1e-06 Score=90.63 Aligned_cols=107 Identities=15% Similarity=-0.005 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCC---ChH----HHHHHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008896 90 VNMVTFMFYVMHK---SFA----DSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGLTGITLCATMKV 161 (549)
Q Consensus 90 ~~l~~yl~~~l~~---s~~----~a~~~~~~~~~~~~~~~l~~G~lsD~~~G-R~~~~~i~~~l~~~g~~~~~~~~~~~~ 161 (549)
...|+|+++..+. +.. ..+...++..+..++..++-|-++|.. | ||+.+.+..++.++++..+++...
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~--- 111 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP--- 111 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence 4568888887665 332 334566777777888888999999976 7 666777777777777777776511
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
+.+....++...+..++..+......+++.|..++++.+
T Consensus 112 ----------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ 150 (438)
T COG2270 112 ----------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG 150 (438)
T ss_pred ----------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC
Confidence 124455555666778888888888999999999988833
No 195
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.82 E-value=1.7e-07 Score=100.03 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
|....+++..++..++........+.|.+..+|.+ ...+....+..++..++.++.++++||+ |+|+++.++.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 35666777777777777767777777777778887 4456666678888889999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r 227 (549)
+.+++.+... .+.+.+++..++.|++.++......++++|..+.++.+ .++..
T Consensus 303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence 9888877621 36788888899999999999999999999999855422 12336
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
|..++.+.+...++.++++.+.+.+.+..|+
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 7888889999999999999999988765544
No 196
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.80 E-value=1.1e-07 Score=95.49 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCChHHH--HHHHHHHHHHHHHHHhHHHHHh
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNM-----------------VTFMFYVMHKSFADS--SNAVNNFLGISQASSVLGGFLA 129 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l-----------------~~yl~~~l~~s~~~a--~~~~~~~~~~~~~~~l~~G~ls 129 (549)
+..+.+...-|...+.+|+++-.. +.+++-..+-..... -.=+.+..+.-..|.++.+++-
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 355566667778888888865322 222222111111111 1223344566778899999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhh
Q 008896 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (549)
Q Consensus 130 D~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 209 (549)
||+ |||+++..+.+++.++.+++..+.. ++ .-..+++.+|++ ..+.+.+.+
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~araf----isg~fqvaY 456 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAF----ISGAFQVAY 456 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHH----HhchheEEE
Confidence 996 9999999999999998888775411 01 122344555554 445566788
Q ss_pred hhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.|..|.+|+.. |+.+.+.-.....+|+.+.|+++
T Consensus 457 vYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 457 VYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 99999999998 99999999999999999999998
No 197
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.79 E-value=6.8e-07 Score=90.61 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=110.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
..+-+++|+++.+.+.+...-.+...+...+.|.++||+ |||+..++..+++.+..+.--.
T Consensus 58 Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~------------------ 118 (354)
T PF05631_consen 58 YALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS------------------ 118 (354)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc------------------
Confidence 344468999999998877777777777778999999997 9999999999998887754332
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~i~p~i~~~l 252 (549)
.+...++++|++-|+++.....+..+.+......+.-+ ..-...-++... +.+.+-+.++..++-++
T Consensus 119 -----------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 119 -----------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 46888999999999999999888877664332222110 011344444433 33444556666666677
Q ss_pred hhccch--HHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 253 QMEHGW--GSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 253 ~~~~gw--~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
.+..|. .++|.....+.+++.++.....++.
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 766654 7788888777777666655544443
No 198
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.78 E-value=4.3e-07 Score=96.65 Aligned_cols=191 Identities=13% Similarity=0.042 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.++.....+...+...+.-........+.+-++-|++..++.++.........+..+++.++-||+ |||+.++++..+.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 334455555566665554433333445566677899999999999889999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhh-HH-HHHHHHHHHHHhc-cCcchhhhhhhcccCCCCChhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ-ML-YLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~g~g~-g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
.+..+++.......... .. .. ..+++.++..++. -++-|...-+.+|++|+..
T Consensus 346 ~~~~~~~~~~~~l~~~~---------------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~--- 401 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSF---------------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA--- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc---
Confidence 98888877654321100 00 11 1234444433333 3346777888899999998
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008896 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
|..++++-.....+...+-.+.-..+.+..|- +.|.+-++..++..+..+...|+.|.+
T Consensus 402 ---R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 402 ---RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 99999997777777766666666667777665 455555555555555555656665544
No 199
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.78 E-value=5.2e-07 Score=95.12 Aligned_cols=158 Identities=6% Similarity=-0.061 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 84 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
....+...++.|+++.+|.+..+.+.......++..++.++.+++.|+. ++++++.++..+ .+..+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------- 290 (393)
T PRK11195 220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH-------
Confidence 3334445567788888999999999999999999999999999999986 988888777533 2222222222
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (549)
.+.+...+..++.|++.+...+...+.+.+..|++. ++++.+++.++..++|..
T Consensus 291 ---------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 291 ---------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAML 344 (393)
T ss_pred ---------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHH
Confidence 244555667778899988888878888777644322 168899999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 244 i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
++..+.+.+ +..|-++.+.+..+..++...+.+
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999888855 566766666665555444444433
No 200
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.77 E-value=3.3e-07 Score=99.11 Aligned_cols=165 Identities=12% Similarity=-0.025 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
|.++.+++..++..+..+......+.|.+..++ +....+.......++..++.++.++++||+ |||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 456666677777777666555554444433333 445555566666677888889999999997 999999988887776
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCCh-hhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK-DYKTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~-~~~~~r 227 (549)
+.+.+.+... .+. .+...+++..++.|++.+...+...++++|..|.++- ..++..
T Consensus 309 ~~~~~~~~~~----~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGL----AAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhc----cCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 6655543211 011 3455566677788899999999999999999774421 111224
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
|..+++..+..-+|.++++.+.|++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6678889999999999999999998766555
No 201
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.76 E-value=6.7e-08 Score=104.62 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G--R~~~~~i~~~l~ 146 (549)
+.++.+.+...+..++++.....++.|.. ..++++.+++.++++..+...++.++.|+++|+. . ++.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 47777888888888888888888888887 8999999999999999999999999999999986 5 334444555555
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.+..+.+++. .+...++..-++.|++.|......+..+.|..+.++
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 5555444443 456777777888999999998888899999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
-..++++..+...++..+||.++|++.+.+| |...|+.+.+..+++.+.+++..
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999999888 99999998888888776665544
No 202
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.75 E-value=2e-07 Score=96.46 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
..+.+.+..++..++++.+.+.++.|+++ +|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35556666667778888888899999987 9999999887777655 56788999999999997 999998888877777
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..+..+........ . ....+.+.+..+.++.+++.+...+...+++.|.+|++. |+
T Consensus 288 ~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASNGHHD--------------G---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhcCccc--------------c---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 655444321100000 0 000134556667788899999999999999999999999 99
Q ss_pred hHHHHHHHHHH
Q 008896 229 RFFNFFYLSVT 239 (549)
Q Consensus 229 ~~~~~~~~~~~ 239 (549)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999776554
No 203
>PRK11043 putative transporter; Provisional
Probab=98.74 E-value=1.4e-06 Score=91.81 Aligned_cols=150 Identities=12% Similarity=-0.006 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 008896 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~ 159 (549)
+....++....+.+.|++ ++|++..+.+.......++..++.++++++.||+ |||+.+....++..++.+.+.+....
T Consensus 214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL 291 (401)
T ss_pred HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555666777765 5899999888877777788888999999999997 99988766665555544433322110
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHH
Q 008896 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+ .+...++++..+.+++.+...+.......|..| ++ |+++.++++....
T Consensus 292 ---~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~ 341 (401)
T PRK11043 292 ---SH--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQL 341 (401)
T ss_pred ---cc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHH
Confidence 00 233445555667788888888888887778776 45 8999999888878
Q ss_pred HHHHHHHHHHHHHhhccchHHH
Q 008896 240 VGAIVAFTLVVYIQMEHGWGSA 261 (549)
Q Consensus 240 ig~~i~p~i~~~l~~~~gw~~~ 261 (549)
.++.+++.+.+.+.+.......
T Consensus 342 ~~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 342 GLCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHHccCCChhHHH
Confidence 8888888888888765444443
No 204
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.73 E-value=9e-07 Score=89.21 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..|.+.+..-+..+.+|.+..|+|.++. +.|+|..+++..++...+......+++-++++|.-.+|+........+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5667777777889999999999999985 689999999999999999999999999999998767899999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+. |. +...+. .+++|+|.|+.++..-.++.+..++.+. -++
T Consensus 288 ~~G~~~~-------P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~ 333 (395)
T COG2807 288 LVGLLLA-------PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAA 333 (395)
T ss_pred HHHHHHh-------hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHH
Confidence 9888765 21 222222 4789999999999999999998775542 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGI 271 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i 271 (549)
..++-+-...+=+.+||.+.|++.|..| |+......+...++
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL 376 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence 5556566666778889999999999875 87766554444333
No 205
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.72 E-value=1.5e-06 Score=90.54 Aligned_cols=147 Identities=10% Similarity=-0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+...+..++...+.+....+.+.++.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++..+..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3334444444455555666667788888999999999999999999999999999999997 999999888876554333
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+...... + .+...+.++..+.+.+.+...+.......|..| +. +++..
T Consensus 276 ~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 324 (377)
T PRK11102 276 WLVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS 324 (377)
T ss_pred HHHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence 32222110 0 123333444444444455555555566677766 55 77777
Q ss_pred HHHHHH-HHHHHHHHHHHHH
Q 008896 232 NFFYLS-VTVGAIVAFTLVV 250 (549)
Q Consensus 232 ~~~~~~-~~ig~~i~p~i~~ 250 (549)
++.... ..+|..+++.+++
T Consensus 325 ~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 775443 3466666666543
No 206
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.71 E-value=1.4e-07 Score=96.80 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
.++...++..+.++....+++.|+.+.+|.+ ..+.+...+...++..++.++.|+++||+ |+++...+......++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence 3444455555566667888899999999999 78899889999999999999999999997 988888877777776666
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+.+.... .+....++..++.|++.+...+....++.|.+|+++ |++..
T Consensus 289 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 337 (352)
T PF07690_consen 289 GLLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF 337 (352)
T ss_dssp HHCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred HHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 65543220 244566667788999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 008896 232 NFFYLSVTVGAIVAF 246 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p 246 (549)
++++...++|..+||
T Consensus 338 g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999999987
No 207
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.69 E-value=7.9e-07 Score=94.32 Aligned_cols=164 Identities=9% Similarity=-0.050 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+...+..++......++.++++.|+.+. .+.+...++...+.+..+..++.+++|+++||+ ++|+++.++..+..+.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33444455555555556778889998653 245555566677777788999999999999997 9999988888777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.++..+. .+. ....+.++.|++.+.++|.+.+...+..+++. ...
T Consensus 313 ~ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~ 357 (410)
T TIGR00885 313 CLGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYG 357 (410)
T ss_pred HHHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhh
Confidence 6666553 111 23566677888899999999999999998665 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~------gw~~~f~i~~~~~~i~ 272 (549)
. +....+ .+|+++.|.+.|++.|.. +.+..|.++.++.+..
T Consensus 358 s-~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 358 A-AGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred H-HHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 2 222223 399999999999999954 4788888877665443
No 208
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.68 E-value=1.7e-06 Score=90.96 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 87 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
......+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+++.++..+..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888999999988888888889999999999999997 99999999988888877776654
No 209
>PRK09669 putative symporter YagG; Provisional
Probab=98.67 E-value=9e-07 Score=94.86 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
++.+++..++...+...... +..|..+..--+....+.......+...++.+++++++||+ |||+.+.++.++..++.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 34444444444444432223 34444333222233334445555677778888999999996 99999988876665543
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhhh
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~ 229 (549)
+...+. +. .+...+++..++.|++.++..+...++++|..+.++.+ .++..+.
T Consensus 309 ~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~ 362 (444)
T PRK09669 309 ALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL 362 (444)
T ss_pred HHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence 332221 11 35566777778899999999999999999999744321 1122466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
.++.+.+...+|.++|+.+++++.+..|+
T Consensus 363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 363 VFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 78889999999999999999998876665
No 210
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.65 E-value=3.2e-06 Score=86.20 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~--------- 255 (549)
.+...++++.+++|.|.+..++..++++++..++++ +.+.+++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 578889999999999999999999999999999888 89999999999999999999999987632
Q ss_pred -------cchHHHHHHHHHHHHHHHHH
Q 008896 256 -------HGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 256 -------~gw~~~f~i~~~~~~i~~~~ 275 (549)
..|+++|++.++...+..++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888655554443333
No 211
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.61 E-value=8.3e-07 Score=95.07 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIFTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR----~~~~~i~~~ 144 (549)
+.+|.+.+..++...+++.+..++|.|+.+.+|++..+.++..++..+...+..+++|.+||++.-| +.+..+...
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 4889999999999999999999999999999999999999999999999999999999999987221 122222222
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+...+..++.+.. .+.+ |. .. ......+.++..+.|+..++..-+. .|..| +.
T Consensus 338 i~~~~~ai~l~~l---~~~~----~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~~----~~~ap-q~---- 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVL---AFTS----DE----------HR-LLAVILLTIAIGLSGFNISGFYKNH----QDIAP-QH---- 390 (466)
T ss_pred HHHHHHHHHHHee---eecC----CC----------cc-hHHHHHHHHHHHHcccchhhhHhhh----hhccc-hH----
Confidence 2222222211110 0111 00 00 0112222222233333333332222 22233 23
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHhh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~---~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
-+..+++.+...++.+.++|.+.+.+..+ ..|++.|++.++..++..+++.+.
T Consensus 391 --a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 --AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 58888999999999999999999998842 369999999998888877666553
No 212
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.59 E-value=1.2e-05 Score=85.93 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhcCCChHHH-HHHHHHH----HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 88 LSVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a-~~~~~~~----~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
...+...+.....+.+.... ....... .+...+..++-|.++|++ |||..+.+..+...+..+.+.+.
T Consensus 40 ~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------ 112 (463)
T KOG2816|consen 40 VMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------ 112 (463)
T ss_pred chhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH------
Confidence 33566667666666543322 2223333 456677788999999997 99999999988877776666553
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHH--hccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i 240 (549)
. +++++ +.++ +.+...+...++++|....++ |...+++.+.+...
T Consensus 113 -----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~ 159 (463)
T KOG2816|consen 113 -----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGA 159 (463)
T ss_pred -----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHH
Confidence 1 22333 3333 334566778889999999888 99999999999999
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 008896 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 287 (549)
Q Consensus 241 g~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~ 287 (549)
+..++|.+++++.+..|....|++.++..++..+..++..++..+++
T Consensus 160 ~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 160 GLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred HHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 99999999999999999999999999888888777776666654443
No 213
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.56 E-value=9e-09 Score=112.24 Aligned_cols=203 Identities=14% Similarity=0.090 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
+.+..++. +..++......+-+.+.|+++.++++++.+.+-++..+..++..++.+|. -|-|.+.++.+++.+|.+++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence 33444455 66667777778889999999999999999999999999999999999985 67788889999999999988
Q ss_pred HHhhhhcccCC-C------------CCcc-----cccccccCCCC----CcchhhHHHHHHHHHHHHHhccCcchhhhhh
Q 008896 154 TLCATMKVFMP-N------------QDNC-----DRISQLLGSCE----PAKSWQMLYLYTVLYITGFGAAGIRPCVSSF 211 (549)
Q Consensus 154 ~~~~~~~~~~~-~------------~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 211 (549)
++.-+...... . .+.| .....+...|. .....-...++++.++.|+|....++...+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 86422211110 0 0112 00000001111 1112224677889999999999999999999
Q ss_pred hcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---------------------ccc-hHHHHHHHHHHH
Q 008896 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EHG-WGSAFGALAIAM 269 (549)
Q Consensus 212 ~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~---------------------~~g-w~~~f~i~~~~~ 269 (549)
+=|-.+++. -...+++++....+|+++|.++++.+.. +.| |+.+|.+.++..
T Consensus 166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999888 7888899999999999999888876642 123 888888777776
Q ss_pred HHHHHHHHhhccccc
Q 008896 270 GISNMLFFIGTPLYR 284 (549)
Q Consensus 270 ~i~~~~~~~~~~~~~ 284 (549)
++..+.++...|+.+
T Consensus 240 ~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLP 254 (539)
T ss_dssp ---------------
T ss_pred HHHHHHHHcCCccCC
Confidence 666666655544443
No 214
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.55 E-value=2.6e-06 Score=92.11 Aligned_cols=187 Identities=11% Similarity=0.092 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHHhHH----HHHhhhccchHHHH--
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLG----GFLADAYLGRYWTI-- 139 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~----a~~~~~~~~~~~~~~~l~~----G~lsD~~~GR~~~~-- 139 (549)
.+..+++..++..+.+....+.++.|..+..+.+... .+++.++-.+...+..++. .++.+|..+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4444555555666666667777888887765543211 3444444444444443333 34555422333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.+++++..++.+.+++...... .+...+.+++++..++.++|.....|...++.++..|++
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~ 413 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR 413 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 6788888877777665421100 001157888999999999999999999999999999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
. |++.++++.+...+|..+++.+.....+..+|.+.|...++..++..+++++..+
T Consensus 414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999888777778888887777666655555544433
No 215
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.52 E-value=8.8e-07 Score=91.76 Aligned_cols=139 Identities=11% Similarity=-0.000 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
.+.+.+..++.....+.+..+.+.|+++.+|++..+++...+.+.+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 34444455555556667778889999999999999999888889899999999999999997 99988887776666665
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.++.+... +. .+...+++..++.+++.|...+...+..+|.+| ++ +++.
T Consensus 306 ~~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~ 354 (366)
T TIGR00886 306 FLVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAV 354 (366)
T ss_pred HHHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccH
Confidence 55543210 00 034444555556666666666777788888887 35 8888
Q ss_pred HHHHHHHHHHH
Q 008896 231 FNFFYLSVTVG 241 (549)
Q Consensus 231 ~~~~~~~~~ig 241 (549)
.++.+...++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 88877766655
No 216
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.49 E-value=1.3e-05 Score=84.30 Aligned_cols=139 Identities=12% Similarity=-0.071 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCc
Q 008896 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (549)
Q Consensus 89 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (549)
....+.|+++.+|.+..+.+........+..++.++.+++.||+ ||+.. .......++.+.+...... ..
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----~~--- 296 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMW--QSVICCLLAGLLMWIPGWF----GV--- 296 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHh----cc---
Confidence 34556788888999999888888777788888888888899986 73332 2222222222222111000 00
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008896 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i 248 (549)
.+.+.+.++.++.+++.+...+.......|.+|+ + ++...++.+...++|..+++.+
T Consensus 297 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 297 ----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHH
Confidence 2345566677888899999899999999898873 4 7888889888889999999999
Q ss_pred HHHHhhccchHH
Q 008896 249 VVYIQMEHGWGS 260 (549)
Q Consensus 249 ~~~l~~~~gw~~ 260 (549)
++++.....+..
T Consensus 354 ~~~~~~~~~~~~ 365 (394)
T PRK11652 354 SAMLPQTGQFSL 365 (394)
T ss_pred HHHccCCchHHH
Confidence 998876644443
No 217
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.49 E-value=1.3e-05 Score=84.47 Aligned_cols=179 Identities=8% Similarity=0.002 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
+...++..++...+.-....+...|+++.-+.+....+...++..+.-.+.-.+.+++-.|+ |-++++.++.+.+++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33444445555555555667788898755447777777666676777777778889999997 99999999999888866
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.+++.... |. ........++..+.|+..+........++.+..|++. |+++
T Consensus 288 ~l~a~~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~ 338 (400)
T PF03825_consen 288 LLYAYFSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATA 338 (400)
T ss_pred HHHHHhcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHH
Confidence 66655411 00 0111223344567899999999999999999999999 9999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhccchHH------HHHHHHHHHHHHHHHHHhh
Q 008896 231 FNFFYLS-VTVGAIVAFTLVVYIQMEHGWGS------AFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 231 ~~~~~~~-~~ig~~i~p~i~~~l~~~~gw~~------~f~i~~~~~~i~~~~~~~~ 279 (549)
.+++... ..+|..+|..++|++.++.|-+. .+.++++..++..+++++.
T Consensus 339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9997764 67999999999999999877443 3444555444444444443
No 218
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.49 E-value=1.4e-05 Score=83.63 Aligned_cols=179 Identities=8% Similarity=0.057 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
+.+|...+........++..-...+.|.+..++- ++...+...++-.+.-++.-.+..++-+|+ |.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 3555555444444444443333467787765543 334456667777777788888899999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+++=.++++++ .+.+.+.+...+.|+-.+.......-++++.+|++-
T Consensus 299 ~~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl----- 345 (412)
T PF01306_consen 299 MAIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL----- 345 (412)
T ss_dssp HHHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG-----
T ss_pred HHHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH-----
Confidence 99888888876 577888999999999999999999999999999877
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 226 ~r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
..+...+ ++++..+|..+.+.++|++.|+.|++..|++.+.++++..++..+..++
T Consensus 346 -sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 346 -SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp -HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 7777777 5678899999999999999999999999988877766666665554443
No 219
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.43 E-value=5.1e-06 Score=87.81 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.....++..++...++....+..+.|.+..+|.++....+.......+..++.++..+|++|+ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 445555567777777766666667777778888888888888888888888899999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~ 228 (549)
.+++.+.. . .+..++++..++.++|.+...+...++++|..+-.+-+ .++.-|
T Consensus 316 ~~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 99988862 1 46788888889999999999999999999998854422 112235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
..++.+.+..=+|.+++..+.|++....|
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666777777888888888888765444
No 220
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.39 E-value=2e-05 Score=77.53 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=108.1
Q ss_pred HHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 93 VTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 93 ~~yl~~~l~~s~--~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
...+..+++.+. ...+...+.+.+...++.++.|.++||+ |||+.+.++.....++.+.+.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------ 91 (338)
T COG0477 25 LPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN------------ 91 (338)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc------------
Confidence 334444555555 4778888899999999999999999997 9998888888765555444444310
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhhhHHHHHHH-HHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTL 248 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~i~p~i 248 (549)
.+...+++.|++.|++.+...+...++++|.+|. +. |+...+.... ...+|..++|.+
T Consensus 92 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 92 --------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred --------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788889889999999999999999999997 34 8888888777 577888888877
Q ss_pred HHHHhhc--cchHHHHHHHHHHH
Q 008896 249 VVYIQME--HGWGSAFGALAIAM 269 (549)
Q Consensus 249 ~~~l~~~--~gw~~~f~i~~~~~ 269 (549)
++.+... .+|++.|.+.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 152 AGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 7766554 57888665554443
No 221
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.38 E-value=2.9e-05 Score=76.03 Aligned_cols=155 Identities=12% Similarity=0.113 Sum_probs=105.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
||........+..+.. +.|.... ..+.+++.+|++++|...+-..-.++..++ ++.|.+.|++ |.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 4544443344433332 3333433 357889999999999999988888888876 7889999986 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.+|+.+++++..-.. + +...+.+.+..++.+.+.+...........+.||. +
T Consensus 77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999999887633111 0 12455566666666666555555555556688984 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
||...++.-....+++.+=..+-..+.
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 899999866666666655444444333
No 222
>PRK11462 putative transporter; Provisional
Probab=98.37 E-value=4.9e-05 Score=81.91 Aligned_cols=159 Identities=10% Similarity=0.020 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
..++...++..+...........|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+..+..+..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333333443 33344566677788888999999999997 998887655544433333
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh-hhhhhhH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRF 230 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~~~ 230 (549)
++.+. +. .+...+++..++.|++.++..+...++++|..+.++-++ ++..+..
T Consensus 309 ~~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 309 AMFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred HHHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 32222 11 223334445566788877777777888898877433111 1113444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
++.+.+...+|.++++.+++++.+..||
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6667788899999999998888765554
No 223
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.27 E-value=4.5e-05 Score=78.19 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.-.+..|+..-+-..+.++++.|+.+..|.+..+++..++.+.++.++|..++.++-.|+ -..|.+.+...+-.+-
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 334444455555444445668899999988999999999999999999999999999999986 8778777766544444
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+...+. .+ ..-+.+.++.|++.+.++|.+.+...+..+++.+ .++
T Consensus 316 ~~~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s 361 (422)
T COG0738 316 LLAVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGS 361 (422)
T ss_pred HHHHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccc
Confidence 4444333 12 2345566789999999999999999999995542 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~ 263 (549)
. .-....+|+++-|.+.|++.|..|-...+.
T Consensus 362 ~---~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 362 G---LLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred e---eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 2 222345899999999999999998777765
No 224
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.25 E-value=8.1e-05 Score=76.89 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~ 154 (549)
+..-++..++++.==..+-+|--+.||++..+.+.....+.++..++-.+.|++..+-.|.+++..+++.+..++..+..
T Consensus 214 ~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii 293 (403)
T PF03209_consen 214 FVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII 293 (403)
T ss_pred HHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 33334444555433345668888899999999999999999999999999999888656899999999998888887777
Q ss_pred HhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHH
Q 008896 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (549)
++... .+.+.+..+.+++|++.|.+....-+.+-|+..+++ -|.+++.|
T Consensus 294 ~a~~~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~W 342 (403)
T PF03209_consen 294 LAGPL-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAW 342 (403)
T ss_pred HHHhc-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHH
Confidence 66331 356788999999999999999888899999998887 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHHH
Q 008896 235 YLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 235 ~~~~~ig~~i~p~i~~~l~~~----------~gw~~~f~i~~~~~~i~~~~~ 276 (549)
.....+...++..++|.+.|. .+|..+|.+-++..++++.+.
T Consensus 343 GaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 343 GAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888877652 346677777766666555543
No 225
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.23 E-value=5.3e-05 Score=82.53 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCh------HHHHHHHHHHHHHHHHHHhHH----HHHhhhccchHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~--~l~~s~------~~a~~~~~~~~~~~~~~~l~~----G~lsD~~~GR~~~~~i~~~l~ 146 (549)
++....+|.+...++.++.. ..+.+. ...++..++-.+...+..++. +++.+|+ +..+.+.++.++.
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 34455566666666656543 111111 113333344343334443444 6666664 7778889999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+.+.+......- | ...+.+++++..++.++|.+...|...+++.+..|++.
T Consensus 361 ~l~f~~l~~~~~~~~~----------------~---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------ 415 (500)
T PRK09584 361 SGAFLVLPLGAKFAND----------------A---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------ 415 (500)
T ss_pred HHHHHHHHHHHHhcCC----------------C---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------
Confidence 9998887765321110 0 01345678889999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.++.++++..+|+.++..+.+.... ..++.+.|...++..++..+++++
T Consensus 416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888877776653321 123667777666554444443333
No 226
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.21 E-value=3.1e-05 Score=84.05 Aligned_cols=176 Identities=7% Similarity=0.033 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-------HHHHHHHHH
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIY 146 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~----~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-------~~~i~~~l~ 146 (549)
..+....+......++.|.++..+.+. ....++.+...+...+..++.|++.||+ |||+ -+.++.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 444444555555667777765333321 1223344444444555666678999997 9886 377777777
Q ss_pred HHHHHHHHHhhh-hcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.++.+.++.... ..... ...+.++++...++.|+|.+...+....++.+..|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~-------------------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~----- 412 (489)
T PRK10207 357 SLGFLTAAAAGMWFADAQ-------------------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL----- 412 (489)
T ss_pred HHHHHHHHHHHHhhcCCC-------------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence 777655432211 00000 01346667778889999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++..++.+++...+|..+|..++.+... ...+.+.|...++..++..+++++.
T Consensus 413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765521 1124566666555555444444443
No 227
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.20 E-value=0.00013 Score=77.59 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++....++.....+|.|+++.+|.+..+.++......++..++..+.+.+.++. ++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 455555555666666667777788899999999999999887767777777766666655434 4444444444444445
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+.... .+ .+....+++.++.++|.+...++.....- .+.+.+ +++
T Consensus 298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 4444332110 01 12333566777888888888877775332 222221 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
..+++......+..+++.+++++..+ +-.+.|.+..+...
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 77777777777888888888888665 44566655444433
No 228
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0018 Score=68.83 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHH
Q 008896 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (549)
Q Consensus 111 ~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (549)
..+-.....+..++++.+-|.+ |.|+.+.++...+....+.+.. .|...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 4555566677888999999986 9999999999988887777655 366778
Q ss_pred HHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
+.+-.+.|+|.+..+.-...+.++-.+++. +.+..++
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi 142 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISI 142 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHH
Confidence 899999999999999999999999888777 5555554
No 229
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.02 E-value=2.6e-05 Score=82.39 Aligned_cols=169 Identities=8% Similarity=-0.075 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~ 158 (549)
++...+.-.+.+++--++ ++.+-.+...+.....-..+-++.-++.++|-+++ |+-+++.++++..++=.+.+...
T Consensus 381 v~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L-- 456 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL-- 456 (618)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh--
Confidence 333333333455554444 45665555555444455566677778889999997 99999999998888877766665
Q ss_pred hcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHH-
Q 008896 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS- 237 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~- 237 (549)
+|.|+.+..-++.|+-.+.++.++.+++++..|++- |.++-++....
T Consensus 457 --------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f 504 (618)
T KOG3762|consen 457 --------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIF 504 (618)
T ss_pred --------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHh
Confidence 678888999999999999999999999999999999 88888886554
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 238 ~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
-.+|-.+|.+|+|.+...+|-|..|.+.++..++.++++....+..
T Consensus 505 ~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 505 HGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred cccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4788899999999999999999999988888777777666554433
No 230
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.02 E-value=3.5e-05 Score=83.00 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~~i~~~l~ 146 (549)
.+|...+..++.....|++..+++.|+++..|++..++..+...+.++.+++.+++|+++||. +.+|..+.+.+.++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 678888999999999999999999999986789999999999999999999999999999993 36666666665554
Q ss_pred HH-HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+ |.+.+.... +......+.+....+.+...++......+....+.
T Consensus 354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 44 434433321 11222222222333333344444555555554433
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGAL 265 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p-~i~~~l~~~~gw~~~f~i~ 265 (549)
+|....+.+..+.+.+++++| +..+.....++|.+.|+..
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 255555555555554444443 3445555567888888543
No 231
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=1.3e-05 Score=81.83 Aligned_cols=165 Identities=13% Similarity=0.025 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
.-+.++.++.+.+..+..+.++...-..+.+.++..+.|.|+||+ +.-+.+....-+.++|.......
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP----------- 356 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIP----------- 356 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhH-----------
Confidence 445677888888987776888887778888999999999999997 93333333333333342222221
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.| .+...+++-+...+++.+...+......+...+.++..+-..-|...++...+..+|..+||.
T Consensus 357 ~~---------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~ 421 (464)
T KOG3764|consen 357 FA---------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPT 421 (464)
T ss_pred hh---------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcccc
Confidence 22 456677777888888888887777777777776555321112577888889999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++|.+.+..|++|.-.+.++..++..-++.+.
T Consensus 422 ~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 422 FGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred ccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777766666555554443
No 232
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.01 E-value=0.00031 Score=75.56 Aligned_cols=207 Identities=14% Similarity=-0.019 Sum_probs=139.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChH------HH----HHHHHHHHHHHHHHHhHHHHHhhh
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------DS----SNAVNNFLGISQASSVLGGFLADA 131 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~------~a----~~~~~~~~~~~~~~~l~~G~lsD~ 131 (549)
..+..++.++.+++++++..++++.+..+...|+.+ .+|-++. +. .+....+.+...+..++--++.++
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999998888888875 3543221 11 233444455555666677788888
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhh
Q 008896 132 YLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (549)
Q Consensus 132 ~~G-R~~~~~i~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 209 (549)
+ | ||++..++.++..++++...+....+. ..+. +.+++ .- .+........++...+.|+..+.....-.
T Consensus 332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~-----~~~~~--~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY-----DGDGE--SL-PPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-----ccccc--cc-CcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 6 8 578889998888888877765432110 0000 00000 00 00001135556666788999999999999
Q ss_pred hhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
+++++..+++. .+.|..+++++.+..+...+..+..|.+.+..| -.+.+.+.++..+++.+..++..|+
T Consensus 403 al~s~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 403 ALASIRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999988544 126999999999999999998888777655444 5567788888888877777665554
No 233
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.89 E-value=0.00036 Score=76.29 Aligned_cols=197 Identities=13% Similarity=0.051 Sum_probs=104.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+..++......+..++..++-+....+....+-+..+.+... .....+......++.+++.++-||+ |||+.++.+.+
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 334454554444444444433333233333445566665432 4444445556667777779999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
.+.++.++++........... + ........+....+.......+..+....+.+|.+|.+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~---- 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL---- 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence 999999988876332111100 0 000112222222233334444445566678899999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHHhhccccc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM-LFFIGTPLYR 284 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~-~~~~~~~~~~ 284 (549)
|+.+.++-.....+...+-......+.+..++...|++......+..+ ..++..++.+
T Consensus 429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 888887744443333322222222232332334455555544444444 3444444443
No 234
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.89 E-value=7.5e-08 Score=103.09 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
....+....+..+..+....+..+++.+..+.++. ........+...++.+++.++.||+ |||++++++..+..+..
T Consensus 254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~ 330 (451)
T PF00083_consen 254 LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICS 330 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 33344444444333333334445566666777665 2222233355566777788999997 99999999988877766
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+.++.... ..+. .+...+...+............+..+....+.+|.||++. |.++
T Consensus 331 ~~~~~~~~---~~~~---------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~ 386 (451)
T PF00083_consen 331 LILGIIFF---LGVS---------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTG 386 (451)
T ss_pred cccccccc---cccc---------------cccccccccceeeeeccccccccccccccccccccccccc------cccc
Confidence 66541000 0000 0000111111111111222222445666788899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (549)
.++.+....+++.+++.+..++.+..+-...|++.+++..+..++.++..|+.+.
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 9998888889999998888888777663445555555555555555555555443
No 235
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.88 E-value=3.9e-05 Score=82.91 Aligned_cols=136 Identities=10% Similarity=-0.152 Sum_probs=105.6
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccccc
Q 008896 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (549)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (549)
.+.+|+++...+.......++..++..+.+++.+|+ +.|+++.++.++..++.+...+...-+..... .
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i------- 348 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I------- 348 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC---C-------
Confidence 457899999999999999999999999999999886 99999999998888877554322110000000 0
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
.+...+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+..
T Consensus 349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 112233444567788888888888999999999998 999999999999999999999999999887
Q ss_pred c
Q 008896 257 G 257 (549)
Q Consensus 257 g 257 (549)
|
T Consensus 415 g 415 (468)
T TIGR00788 415 G 415 (468)
T ss_pred C
Confidence 7
No 236
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.71 E-value=0.0016 Score=71.43 Aligned_cols=154 Identities=11% Similarity=0.015 Sum_probs=105.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA- 140 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~- 140 (549)
.+++|.+...+++.++..+.+|.+....|.+....++.+.. ..++....+..+..++.++.|++.-++ ||.|-.+
T Consensus 306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li 384 (599)
T PF06609_consen 306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI 384 (599)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence 44456777778888899888998887778887777766653 456666777778888888889999876 8766554
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.++++++...++.. .+ .|....+...++.|+|.|...........-..|++.
T Consensus 385 ~~~~~~ta~~Gama~~------~~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ 438 (599)
T PF06609_consen 385 FGSVLMTAFCGAMAAV------RP--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED 438 (599)
T ss_pred HHHHHHHHHHHHHHHc------cC--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence 5555555544444332 11 122334555677888888876666665555666666
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008896 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~ 251 (549)
.+.+.++......+|+.+|..+-.-
T Consensus 439 ------ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 439 ------IGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred ------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7888888777777777777666533
No 237
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.70 E-value=7e-05 Score=77.84 Aligned_cols=180 Identities=15% Similarity=0.053 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--------HHHHHH-HHHHHHHhHHHHHhhhccchHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFL-GISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~--------~~~~~~-~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
+......+.-|+.-+++|+...+.. -+-+.+++.+.+... ...+.. .++..+..++..+.|++ |||++-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s-~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQS-VIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHH-HHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 4555556666777777877655533 333445554333222 111222 22333666777889987 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhccCcchhhhhhhcccCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
+-+.+++.+..+.++..-.. . .+...+++.- +..-++.-++......+-+|.||+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~--~----------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ--L----------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc--c----------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 99999888887776654110 0 1111122221 222345556666677777999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-----~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
+. |+.+-++...+.-+|+.++.....++.+ ..|.+++|++.+.+..+..++.++..
T Consensus 438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 99 9999999999999999999999999998 78899999999988888877765543
No 238
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.70 E-value=0.00033 Score=55.55 Aligned_cols=67 Identities=18% Similarity=-0.012 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
..++...+.-.+.++++.|++ +.|++..+.+.+.++..+...+++++.|+++||+ ||++.++....+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 344444445456788888886 5999999999999999999999999999999997 888877665543
No 239
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.68 E-value=0.0017 Score=72.76 Aligned_cols=178 Identities=11% Similarity=0.062 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccc--hHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~~G--R~~~~~i~~~l~ 146 (549)
.++...+..++....++++.+++|.|+++.+|++..+++++.....+ +..++.+++|+++||+ + .|+++.+++++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 56777788888899999999999999999999999999988877665 6788999999999997 7 456777777666
Q ss_pred HHHHHHHHHhhh-------hcccCC---------CCC-ccccccc-c---------------------------------
Q 008896 147 LAGLTGITLCAT-------MKVFMP---------NQD-NCDRISQ-L--------------------------------- 175 (549)
Q Consensus 147 ~~g~~~~~~~~~-------~~~~~~---------~~~-~~~~~~~-~--------------------------------- 175 (549)
+++.++...... +..... ... .|+..=+ +
T Consensus 410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~ 489 (633)
T TIGR00805 410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM 489 (633)
T ss_pred HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence 666544221000 000000 000 1210000 0
Q ss_pred -----------------cCCCCCcchhh-HHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH-
Q 008896 176 -----------------LGSCEPAKSWQ-MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL- 236 (549)
Q Consensus 176 -----------------~~~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~- 236 (549)
...|+ ++..+ ...+++..++..+..+.........+-...|+++ |..+.++..+
T Consensus 490 ~y~~CsCi~~~~~~~a~~g~C~-~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~ 562 (633)
T TIGR00805 490 VYTNCSCVQTPGNSSAKKGLCN-PPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLC 562 (633)
T ss_pred eecccccccCCCCCCCcCCCCC-cccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHH
Confidence 00122 12222 3445555555555555555555666778889888 9999999554
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 008896 237 SVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 237 ~~~ig~~i~p~i~~~l~~~ 255 (549)
...+|..-+|++-|++.|.
T Consensus 563 ~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 563 MRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHhcCCChhHHHhhhhhc
Confidence 5578889999999999874
No 240
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.65 E-value=0.054 Score=56.81 Aligned_cols=156 Identities=9% Similarity=-0.004 Sum_probs=101.3
Q ss_pred HHHHHHHHHHh-cCCChHHHHH-HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 008896 89 SVNMVTFMFYV-MHKSFADSSN-AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 89 ~~~l~~yl~~~-l~~s~~~a~~-~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (549)
-+++.+|+++. .|++..+... +.=++.-.....-++...++|.+ |-|++++++.+..++...++-+.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~---------- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG---------- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence 35788999887 8999888763 33333344445556678899965 99999988888777776666554
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008896 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p 246 (549)
.++..+-+..++.|++.+. ..+..+++=-..|+++ =-+..++...+..+|-.++.
T Consensus 92 ------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~ 146 (412)
T PF01770_consen 92 ------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISS 146 (412)
T ss_pred ------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888887665 3344444444444433 23334455555666666666
Q ss_pred HHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 247 TLVVYIQM--EHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 247 ~i~~~l~~--~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
.++..+.. ..++...+++......+++++.++..
T Consensus 147 ~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 147 LLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66665544 34567677777777777776655543
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.54 E-value=0.14 Score=54.36 Aligned_cols=192 Identities=9% Similarity=-0.132 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++.+++.=..--..+.|+.+-+.-+-.-.+..-..-.+..++..+.-|..-||. -|.+++..+.++.-+.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence 344555666666666654444566777765543433333322233344455555667788987 8999988887775554
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCC--cchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEP--AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
.+..+.........+. .. ........+.+..++..+..-+......+.==|+...=..++...+
T Consensus 82 v~~s~~~~~~l~~~~~--------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L 147 (432)
T PF06963_consen 82 VAASCALFLLLLSYPS--------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL 147 (432)
T ss_pred HHHHHHHHHHHHhCCc--------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence 4443322111000000 00 0011222222222222222222222222222344331111111224
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
.+..+...-.=.+--.++|++.|.+....+...+.++.++..++++.+=
T Consensus 148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 4444444333456678899999999888888888777777766666543
No 242
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.47 E-value=0.23 Score=53.47 Aligned_cols=165 Identities=10% Similarity=-0.009 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF-----ADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~-----~~a~~~~~~~~~~~~~~-~l~~G~lsD~~~GR~~~~~i 141 (549)
+++++...+.-|+..+.++.+. -+.+.+..+. ....++-+...+...+. .++-+++++|+ +|++++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 4566666677777666665333 3456665532 33444444443433333 67789999997 99999988
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCc---chh---------hHHHHHHHHHHHHHhccCcch-hh
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA---KSW---------QMLYLYTVLYITGFGAAGIRP-CV 208 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~l~g~g~g~~~~-~~ 208 (549)
....+.+...++++... |.. +..|| ...|... ... +.+...+.-+...+......+ ..
T Consensus 80 ~~~~F~~~f~lF~~vl~-----p~~---~~~~p-~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lF 150 (472)
T TIGR00769 80 VISPFLGFFALFAFVIY-----PLS---DLLHP-TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLF 150 (472)
T ss_pred HHHHHHHHHHHHHHHHh-----cch---hhcCC-cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777665422 110 00111 1111000 000 011111112223344444444 67
Q ss_pred hhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.++..|.++.++ -.|+++++..+.|+|..+|+.+..++.
T Consensus 151 W~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 151 WGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888 789999999999999999999998876
No 243
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.46 E-value=0.0081 Score=64.02 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 008896 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (549)
Q Consensus 87 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~ 155 (549)
.+.+.+++|. +++|+++.+.+.+...--+..+++++++|++|||+=-||+.++.+.+...+..+++.+
T Consensus 29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 3666777776 5799999999999999999999999999999999844555555555555555555544
No 244
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.43 E-value=0.0047 Score=56.05 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHH
Q 008896 109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188 (549)
Q Consensus 109 ~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (549)
.-+++......+..++...+-+++ |.|+++.++.+.+.+-...... .+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~ 90 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNSY 90 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHH
Confidence 444555555666777778888876 9999999999888766554432 3566
Q ss_pred HHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 189 ~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
.++.+-.+.|++.+..+.....++.+..++++ |++..+++......+..+|.++.-
T Consensus 91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999887766 777777755555566665555443
No 245
>PTZ00207 hypothetical protein; Provisional
Probab=97.32 E-value=0.0025 Score=70.26 Aligned_cols=176 Identities=11% Similarity=0.013 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchHH--------
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKS-FAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYW-------- 137 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-~~s-~~~-a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-------- 137 (549)
..+|.++...++..-+-..+..| .-++.+.+ |.+ +.+ ..+.++++.++.++|.+.+|.++... -||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhccccccchh
Confidence 37788888888876666555555 46777888 773 332 23378999999999999999998322 3332
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC
Q 008896 138 -TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 138 -~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
.+.+..+ +.++.+++++. .| ...++++-++.|++.|...++.....+|+|
T Consensus 431 ~~l~~~~~-~~~~~lll~~~------~p----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLT------LP----------------------KAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHH------CC----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 2333333 44555555543 01 146889999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhc-------------cchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~ig~~i~-p~i~~~l~~~-------------~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
. ++ -+.-+++...+..+|..+= -.+.|.+.|+ ..++.+|.+.+...+++.++.+..+-+
T Consensus 482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 9 77 7888888888888887654 4456666532 237888888877777777665554433
No 246
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.00026 Score=73.63 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHH-HHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~~-i~~~ 144 (549)
+.++.+..+.+...+++-.=.+++++|+. .+|.+..-.+.+-..--+...+.+++.|..|||. |||||-++ ....
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56666666666667776555577888874 7899888777776666777788889999999986 68776555 4455
Q ss_pred HHHHHHHHHHHhhhhccc-CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 145 IYLAGLTGITLCATMKVF-MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
...+++++...+..+... .+. . -.+........++++..+.=+..-..+...-++.+|+...++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~----------~--~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~--- 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDN----------E--RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA--- 175 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCC----------c--ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence 566677766665433211 111 0 111333556677777777778888888899999999998766
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 008896 224 KTHLDR-FFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 224 ~~~r~~-~~~~~~~~~~ig~~i~p~i~~~ 251 (549)
+.+ +.+++.+...+|+.+|...++|
T Consensus 176 ---~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 176 ---KKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred ---hhhccchhHHHHHHhcceeeeecccc
Confidence 333 8888888889999888777764
No 247
>PRK03612 spermidine synthase; Provisional
Probab=97.26 E-value=0.029 Score=61.31 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHHH-HHHHHHHhhhhcccCCCCCcc
Q 008896 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLA-GLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 92 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~-~~i~~~l~~~-g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..-.+...+|.+..+.+.++++|.++..+|..++++++++. -|+.. +.+...+... ...++...... . .
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~~~---~-~---- 107 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAFAF---Q-G---- 107 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-H----
Confidence 34455556888888889999999999999999999887543 22221 1111111111 11111111000 0 0
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.....++...++.++..|+..|....+..+... ++ -++..+..|....+|+++|.++.
T Consensus 108 ---------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 108 ---------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHH
Confidence 111222333455677777777777666654322 12 34556777888889999999998
Q ss_pred HHHhh-ccch-HHHHHHHHHHHHHHHHHH
Q 008896 250 VYIQM-EHGW-GSAFGALAIAMGISNMLF 276 (549)
Q Consensus 250 ~~l~~-~~gw-~~~f~i~~~~~~i~~~~~ 276 (549)
+++.- ..|- +..+.+..+..+++++++
T Consensus 166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 166 PFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 87654 5664 344444443344443333
No 248
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.19 E-value=0.016 Score=62.65 Aligned_cols=156 Identities=11% Similarity=-0.034 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH------HH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-----HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY------WT 138 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-----~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~------~~ 138 (549)
....+++...+-...+.-..+.+..|..+.. |++ -.+++..++-.+...+..++.+++=.+. +|| +.
T Consensus 269 ~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~ 346 (493)
T PRK15462 269 LIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWG 346 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHH
Confidence 4444444444444455445556666665532 221 1233434443333333344444443333 221 11
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCC
Q 008896 139 -IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (549)
Q Consensus 139 -~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (549)
+.+++++..++.+.+.++.....- ....+..++++..++.++|+-+..|...+++++..|
T Consensus 347 Kfa~g~~~~g~~f~~l~~~~~~~~~-------------------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP 407 (493)
T PRK15462 347 KFALGLGLMSAGFCILTLSARWSAM-------------------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEI 407 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-------------------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhCh
Confidence 667777777787777665331110 011466778888889999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 008896 218 ERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI 252 (549)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~-~~ig~~i~p~i~~~l 252 (549)
++- |+..++.+.+. ..+|..++..+++..
T Consensus 408 ~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 408 PGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 99999998774 367777776666655
No 249
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.94 E-value=0.011 Score=60.51 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-HHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~-~i~~~l~ 146 (549)
...+.++....+..+..|....+.+.++ .+.+|+++.|.+-+.+.-.++..+.++.-.+..|+..|--+.. ..++.+.
T Consensus 260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~ 339 (451)
T KOG2615|consen 260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI 339 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence 3566666666555555556555656666 5679999999998888888888888888888888874433333 2333322
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.-..+++... .....++++..+..+..+...++...++....|.++
T Consensus 340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------ 385 (451)
T KOG2615|consen 340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------ 385 (451)
T ss_pred HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence 2233333332 334668888889999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
||...++......++-++||.++|.+..
T Consensus 386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 386 RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 9999999999999999999999987754
No 250
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.93 E-value=0.012 Score=47.39 Aligned_cols=66 Identities=8% Similarity=-0.072 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
+.+.+.+.++.++|.++++++.+...+++.+|.+...++.++. .+++.+..+.++..+.++.+++.
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888999999999999999999999999999999999985 78889999999888888888875
No 251
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=96.74 E-value=0.067 Score=58.51 Aligned_cols=126 Identities=9% Similarity=0.019 Sum_probs=83.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
.+....+|.+.......... .....-...+.+-|+. |||.....+..+..++.+..++....
T Consensus 342 ~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~-------------- 403 (521)
T KOG0255|consen 342 SLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDD-------------- 403 (521)
T ss_pred hhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhcc--------------
Confidence 33344455554433322222 4444445557889987 99999999999999988888775220
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.......+...+..++.+....+...+.+|++|+.. |..+.+.......+|..++|.+.....
T Consensus 404 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 404 -----------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110122222233334444445566888899999988 999999999999999999998876554
Q ss_pred h
Q 008896 254 M 254 (549)
Q Consensus 254 ~ 254 (549)
.
T Consensus 467 ~ 467 (521)
T KOG0255|consen 467 Q 467 (521)
T ss_pred h
Confidence 4
No 252
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.74 E-value=0.0091 Score=62.41 Aligned_cols=185 Identities=13% Similarity=0.027 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..+.+...+....+|++.+.+-.- ...-|.+...++.+..+-.++.+++.++.|.++||.-.-|.++++......++
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34444444445555555555443322 23567777888999999999999999999999999733344555555555555
Q ss_pred H-HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 150 L-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
. .+.... . .+ ...+.++....+.|++..+..|...-+..|..-+..+ +
T Consensus 346 ~~~l~~~t-~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~ 394 (480)
T KOG2563|consen 346 TLMLLTCT-L----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------G 394 (480)
T ss_pred HHHHHHhh-c----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------c
Confidence 3 222221 1 01 1234455556678888888888888888877554442 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHH-HHHHHHHHHHHHHHHHHhhccccccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGS-AFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~-~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
...++......+-+.+=.++.+...+..+ |.+ .-+.......+.+++..+.++.|+..
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 44455555555555555556666665554 333 22333444444555555556655443
No 253
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.68 E-value=0.71 Score=51.93 Aligned_cols=249 Identities=12% Similarity=-0.023 Sum_probs=156.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCC
Q 008896 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (549)
Q Consensus 100 l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (549)
.+...........++....++.+++....+|..-|+...+..-...++++.+...+.+..+ . |
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~-~--------------- 77 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-I-P--------------- 77 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-C-c---------------
Confidence 3444556677889999999999999999999876777888888888888888777664311 0 1
Q ss_pred CCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-h
Q 008896 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W 258 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w 258 (549)
.........+..+.+.++.++..++.+.+.+++++..+ ...+.+..++|++..+.+.. |.+++..+..... +
T Consensus 78 ---~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~ 150 (654)
T TIGR00926 78 ---SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGD 150 (654)
T ss_pred ---ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 01223445667778889999999999999999998644 44455789999999887765 5666766665443 2
Q ss_pred HH------HHH-HHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccC
Q 008896 259 GS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG 331 (549)
Q Consensus 259 ~~------~f~-i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~ 331 (549)
.. .+. ..++.+++.++.++.....++..++.+.+...+.++.....+.++. +.
T Consensus 151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------~~-------------- 210 (654)
T TIGR00926 151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------RF-------------- 210 (654)
T ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------hh--------------
Confidence 21 132 4445555566666665555555454433333333333222221110 00
Q ss_pred CcccccCCccchhhHhhhhhccccCCCCCCccc--CchhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccC
Q 008896 332 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409 (549)
Q Consensus 332 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~ 409 (549)
. . .+. .....|..+ ....+++++.+.+++.++...+.+++.+.++......+...++..
T Consensus 211 ----~-~-----~~~---------~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m 271 (654)
T TIGR00926 211 ----S-T-----RSE---------HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM 271 (654)
T ss_pred ----c-c-----CCc---------ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 0 0 000 000122222 223345678888999998888888888888777777777777754
Q ss_pred CC
Q 008896 410 MG 411 (549)
Q Consensus 410 ~~ 411 (549)
.+
T Consensus 272 ~~ 273 (654)
T TIGR00926 272 DG 273 (654)
T ss_pred cC
Confidence 33
No 254
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.63 E-value=0.00049 Score=75.42 Aligned_cols=187 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhc-cchHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIA 140 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~-~GR~~~~~ 140 (549)
...+++ ......+...++.+...++.+++|-|++.+|+++.++++++.....+ +.++|.++||++..|+ ++.|.++.
T Consensus 300 ~Ll~Np-~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~ 378 (539)
T PF03137_consen 300 RLLTNP-VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK 378 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence 333343 56677778888888888999999999999999999999988766554 7889999999999986 34455555
Q ss_pred HHHHHHHHHHHH---HHHh----hhhcccCCCC-------------Cccccccc------ccCCCCCcchhhHHHHHHHH
Q 008896 141 IFTTIYLAGLTG---ITLC----ATMKVFMPNQ-------------DNCDRISQ------LLGSCEPAKSWQMLYLYTVL 194 (549)
Q Consensus 141 i~~~l~~~g~~~---~~~~----~~~~~~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 194 (549)
...+..++..+. ..+. ..+..+..++ ..|+.... ..+.|+.+-..+...+++..
T Consensus 379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~ 458 (539)
T PF03137_consen 379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence 544444443333 1110 0111111111 01111000 12335555233455566666
Q ss_pred HHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 008896 195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~i~p~i~~~l~~~~ 256 (549)
++..+..+..........-...++++ |..+.++.. +...+|..-||++-|++.|..
T Consensus 459 ~~~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 459 FILSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 66666666665566666668888888 999999944 456788899999999998865
No 255
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.49 E-value=0.013 Score=62.91 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
.+..|+...++++..+.+...+.......++.++..++--+.+|-++++.+++....+.....+++
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------
Confidence 446788889999999999888888888888888888544445698889999999999999988887
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
++.++++...++.++ .+...+...++.+-+.++++ +|+.+++......+.+.++|.+-+
T Consensus 329 --------------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 329 --------------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred --------------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHH
Confidence 456666766655444 56678999999999999999 999999999999999999998877
Q ss_pred HHhh
Q 008896 251 YIQM 254 (549)
Q Consensus 251 ~l~~ 254 (549)
.+..
T Consensus 388 ~i~~ 391 (463)
T KOG2816|consen 388 NIFA 391 (463)
T ss_pred HHHH
Confidence 6643
No 256
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.21 Score=51.34 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH--HHHHhHHHHHhh-----hccchHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGIS--QASSVLGGFLAD-----AYLGRYW 137 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~--~~~~l~~G~lsD-----~~~GR~~ 137 (549)
++-.+.+..+++..++..+-. |+.. .++++-+.-|.|-++.+. |...+ +-.-++++++-| |+ ||||
T Consensus 27 ~~d~~~illLl~LYllQGiP~-GL~~-~iP~lL~ak~vSyt~~a~----fS~ay~P~sLKllWaPiVDs~y~k~~-Grrk 99 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPL-GLIG-AIPLLLQAKGVSYTSQAI----FSFAYWPFSLKLLWAPIVDSVYSKRF-GRRK 99 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCch-hHhh-hhHHHhcCCCcchhhhhh----hhhhhhHHHHHHHHHhhhHHHHHHhh-cccc
Confidence 333456677777777766655 6666 556666667777655443 22222 233468888999 75 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCC
Q 008896 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (549)
Q Consensus 138 ~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (549)
.-++-. -+.+|.++..++........ .....++...+....+++-+..+.---++-+..-.+..
T Consensus 100 sWvvp~-q~llG~~mllLs~~v~~~~g---------------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs 163 (510)
T KOG3574|consen 100 SWVVPC-QYLLGLFMLLLSYLVDRGLG---------------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLS 163 (510)
T ss_pred ceeeeh-HHHHHHHHHHHhhCCCcccc---------------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcC
Confidence 766543 34455555555532211110 11122344444445556666666666666666667777
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
+++ .+-+..-...+.+.|..++..+.
T Consensus 164 ~e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 164 REN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred Hhh------cCchhHHHHHHHhhhHHhhccee
Confidence 776 66666666667777777766543
No 257
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.20 E-value=0.061 Score=46.32 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=50.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHH
Q 008896 437 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC 516 (549)
Q Consensus 437 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~ 516 (549)
.......+..|++.|+.++++......+|..+++.+.+.+.+..+ +...|++.+.++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG------------------WRAPFLFLAILALAAFI 132 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc------------------hHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999999999999999988764222 35667777777666666
Q ss_pred HHHhh
Q 008896 517 AFLYS 521 (549)
Q Consensus 517 ~~~~~ 521 (549)
..+++
T Consensus 133 ~~~~~ 137 (141)
T TIGR00880 133 LLAFL 137 (141)
T ss_pred HHhhc
Confidence 55544
No 258
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.95 E-value=2.7 Score=44.21 Aligned_cols=125 Identities=9% Similarity=0.029 Sum_probs=70.2
Q ss_pred HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHH
Q 008896 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV 193 (549)
Q Consensus 114 ~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (549)
-.+-..+.-+++-+..+|+ --+.=+.++.++.++|+++.+++ .+.+.-+++
T Consensus 68 di~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~~~l~G 118 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS----------------------------PSVWVRLLG 118 (402)
T ss_pred HHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec----------------------------cchhHHHHH
Confidence 3344455555666777775 32222344455667777776664 356666778
Q ss_pred HHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHH
Q 008896 194 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGI 271 (549)
Q Consensus 194 ~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~i~~~~~~i 271 (549)
..+.+++.|.-....-++.+ .+++ ...+.|..+...++.+|+..=..+.. .| .|..+.+.....++
T Consensus 119 v~las~ssg~GE~tfL~lt~-~y~~----------~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~ 186 (402)
T PF02487_consen 119 VVLASLSSGLGEVTFLSLTH-FYGK----------SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAI 186 (402)
T ss_pred HHHHhhhhhhhHHHHHHHHH-hcCc----------cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHH
Confidence 88888887776666555533 3332 12344555666666666655444444 44 46666665555444
Q ss_pred HHHHHHhh
Q 008896 272 SNMLFFIG 279 (549)
Q Consensus 272 ~~~~~~~~ 279 (549)
..+.+++.
T Consensus 187 ~~~~~f~~ 194 (402)
T PF02487_consen 187 FLLSYFFL 194 (402)
T ss_pred HHHHHHHh
Confidence 44444443
No 259
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.007 Score=58.90 Aligned_cols=156 Identities=16% Similarity=0.084 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
.+...|+-+.+++...+.+.+...-.+..++...+.|-|+|+. |||+.....+ +.++++.+.-..
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyc----itYiLsCiTKhS---------- 121 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYC----ITYILSCITKHS---------- 121 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeeh----HHHHHHHHhhcC----------
Confidence 3445677788899888888665555555666667889999997 9999765444 445555554210
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhh-hcccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFT 247 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~ad~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~i~p~ 247 (549)
++.-.++++|++-|+.++.......+. ++|.-+.+.= +.+=....|+- ..+++.+-+.++.+
T Consensus 122 ---------------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGl 185 (454)
T KOG4332|consen 122 ---------------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGL 185 (454)
T ss_pred ---------------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 345568899999999988877666553 4454322220 00001111111 12333444555555
Q ss_pred HHHHHhhccc--hHHHHHHHHHHHHHHHHHH
Q 008896 248 LVVYIQMEHG--WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 248 i~~~l~~~~g--w~~~f~i~~~~~~i~~~~~ 276 (549)
.+-.+.+..+ --.+|-..+....++..+.
T Consensus 186 fgn~lvd~~slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 186 FGNLLVDTFSLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 5666666554 4455654444444444433
No 260
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.85 E-value=0.16 Score=54.10 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------Hhhccch
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQMEHGW 258 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~------l~~~~gw 258 (549)
.++++++.+.+++++|.-+..|...++++...|++- .+..++.|.+....|..++..+.+. ..+....
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~ 465 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE 465 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence 567888999999999999999999999999999877 8888999999988888888777662 2233345
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008896 259 GSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~ 277 (549)
...|+..+....+..+..+
T Consensus 466 ~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 466 GRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5667666655444444333
No 261
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.0062 Score=63.83 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=64.1
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHH
Q 008896 437 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC 516 (549)
Q Consensus 437 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~ 516 (549)
...+++.+.+|...||++.++++++.-+|+.+|-.....+.+.++ .| .+.|++.++++++..+
T Consensus 141 ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W----------r~af~~~avl~vi~~~ 203 (493)
T KOG1330|consen 141 IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW----------RWAFRGSAVLGVIVGL 203 (493)
T ss_pred cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce----------EEEEEeehHHHHHHHH
Confidence 455677899999999999999999999999999988888876554 15 6789999999999988
Q ss_pred HHHhhhhcccccccc
Q 008896 517 AFLYSAYRYKYRSEQ 531 (549)
Q Consensus 517 ~~~~~~~~~~~~~~~ 531 (549)
+..++.++-.++.++
T Consensus 204 L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 204 LVFLFVREPERGARD 218 (493)
T ss_pred HHHhhccCccccccc
Confidence 888887766654443
No 262
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.17 E-value=0.68 Score=49.27 Aligned_cols=136 Identities=10% Similarity=-0.087 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
.-..+..|+... |+++...+..=+.-.+....+.++..++-+|+ |-.|+=+++..+..+...++..+...+.. |
T Consensus 277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~-~--- 350 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS-P--- 350 (432)
T ss_pred CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC-C---
Confidence 345577898876 99999999888888888999999999999997 99999999988877776666554322110 0
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
....+...++.+..+.=+|-=++--+..-++-|..|+++ |+...+.-+...++.-.+...
T Consensus 351 --------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 351 --------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred --------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHH
Confidence 012455666666666667777777888888889999888 999999977777777766554
Q ss_pred HH
Q 008896 248 LV 249 (549)
Q Consensus 248 i~ 249 (549)
++
T Consensus 411 ~~ 412 (432)
T PF06963_consen 411 LT 412 (432)
T ss_pred HH
Confidence 43
No 263
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.89 E-value=0.39 Score=53.84 Aligned_cols=183 Identities=13% Similarity=0.094 Sum_probs=113.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhc-cchHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIF 142 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~~~~l~~G~lsD~~-~GR~~~~~i~ 142 (549)
..++ ......+...++.+.+.++.+++|-|+.++++.+...+..+.... ..+.++|.++||++.-|+ +.-|.+..+.
T Consensus 389 l~N~-if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~ 467 (735)
T KOG3626|consen 389 LSNP-IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV 467 (735)
T ss_pred hcCc-hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence 3444 566778888999999999999999999999999999999887554 456788999999999886 3344444444
Q ss_pred HHHHHHHHHH---HHHh----hhh----------cccCCCC---Cccc---------------cc---------------
Q 008896 143 TTIYLAGLTG---ITLC----ATM----------KVFMPNQ---DNCD---------------RI--------------- 172 (549)
Q Consensus 143 ~~l~~~g~~~---~~~~----~~~----------~~~~~~~---~~~~---------------~~--------------- 172 (549)
++..++.++. +.+. ... +....++ ..|+ .+
T Consensus 468 ~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~ 547 (735)
T KOG3626|consen 468 IVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTES 547 (735)
T ss_pred HHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCccc
Confidence 4333333322 2110 000 0000000 0011 00
Q ss_pred cc-c-----------------------cCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 173 SQ-L-----------------------LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 173 ~~-~-----------------------~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
.. + .+.|+.+.......|++..++..+..+........++-...++++ |.
T Consensus 548 ~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks 621 (735)
T KOG3626|consen 548 SGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KS 621 (735)
T ss_pred ccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------ch
Confidence 00 0 001222223333444444444445445555566667778888888 99
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 008896 229 RFFNF-FYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 229 ~~~~~-~~~~~~ig~~i~p~i~~~l~~ 254 (549)
.++++ +.+...+|..-+|++-|++.|
T Consensus 622 ~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 622 FALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred hhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 99999 444567888999999999976
No 264
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=1.2 Score=47.60 Aligned_cols=116 Identities=20% Similarity=0.104 Sum_probs=74.2
Q ss_pred HHHHHHHhHHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHH
Q 008896 116 GISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV 193 (549)
Q Consensus 116 ~~~~~~~l~~G~lsD~~--~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (549)
.+..++.++.+.+++|. +||++++.++..++.++.++.-+... ...|- + ++..-+....++.....+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p--~dap~----~----~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP--NDAPL----R----PTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc--ccCCC----C----CCcccccccccchhHHHHH
Confidence 34455556666777554 59999999999999998887766521 11100 0 0111122222344455566
Q ss_pred HHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008896 194 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 194 ~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i 248 (549)
-+++|++-+........++++..| ++ |..+++++-+-..++..++-+.
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhh
Confidence 678999999999999999999995 44 6778887666555555544333
No 265
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=94.06 E-value=1 Score=47.36 Aligned_cols=63 Identities=8% Similarity=0.060 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
++.+..++..+..|+..|+.+.+....+.|..++++ |.-.++...++-.+|..++.+++-++.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356777777888999999999999999999988877 999999988888888888887776554
No 266
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=93.74 E-value=9.4 Score=41.19 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=35.9
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008896 438 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 477 (549)
Q Consensus 438 ~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~ 477 (549)
...+++.-+|++.|++++|++.....+|.++++.+.+.+.
T Consensus 135 ~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 135 YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999999999999999999999999843
No 267
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=92.81 E-value=4.4 Score=39.79 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+....+.++|..+| ++.|.+.|+.|-+....+.++...++....++
T Consensus 39 l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 39 LNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred HHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344555677888776 66788999999777777777777766655443
No 268
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=91.54 E-value=23 Score=38.16 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s---~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
-|+.++.+.+..++..+.++. .--+.+.+.++ +.....+-+.... ...+..++-+++.+++ -|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~-----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNL-----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 356677777777776666532 23345555554 3333444444444 5667778889999986 999999888
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCC-----CCc-ch-h-----hHHHHHHHHHHHH-HhccCcch-hh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-----EPA-KS-W-----QMLYLYTVLYITG-FGAAGIRP-CV 208 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~-~-----~~~~~~~~~~l~g-~g~g~~~~-~~ 208 (549)
...+....+++++... |. |+.-|||.+.- ..| .- . +.|. ....++.+ +-...... .-
T Consensus 99 ~~~F~~fF~LFa~Vi~-----P~---~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws-~s~~Yi~aELWgslV~S~lF 169 (509)
T COG3202 99 LGFFLGFFALFAFVIY-----PY---KDILHPDPEFSRDLFADLPMFLKWFILIVGEWS-YSLFYIMAELWGSLVLSLLF 169 (509)
T ss_pred HHHHHHHHHHHHHHHh-----cc---ccccCCCHHHHHHHHhhCCccceeeeEeecchH-HHHHHHHHHHHHHHHHHHHH
Confidence 8888888888876533 21 22223331110 011 00 0 0011 11112211 22222222 44
Q ss_pred hhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
..+.-|++..++ -.|++++++.+.|++..++..+..++..
T Consensus 170 w~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 170 WQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667788888877 7899999999999999999999988875
No 269
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=90.24 E-value=30 Score=37.38 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 008896 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 196 l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i 271 (549)
+.++.........-..+.+++|++++ |..+++-++...++...+..++++.+.+..||..+..+.-+..++
T Consensus 275 ~y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 275 AYGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555556666777888876553 899999998888888866666779999999999877655444444
No 270
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=89.80 E-value=4.9 Score=40.81 Aligned_cols=121 Identities=17% Similarity=0.075 Sum_probs=69.0
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 008896 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i 141 (549)
+.+++.-|.++.+....++...++-+ ..++...+..++|... .+.+ ....+...++.+.+-.+ +|-|.++.+
T Consensus 22 r~~~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~~s--l~~~----y~~l~~s~m~~~~~Ir~-~g~K~tm~l 93 (390)
T KOG3097|consen 22 RKRLGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGTVS--LGAL----YLSLIDSSMFMPLLIRF-LGTKWTMVL 93 (390)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcccch--hhhh----hHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 34444455666666655555555533 3455555544333321 1111 12223333444455554 599999988
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
+...+.+.....-. +....++.+-.+.|++.+..+....++++++-...
T Consensus 94 av~~Y~lyiA~Nl~-----------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 94 AVFPYALYIAANLE-----------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred HHHHHHHHHHhhcc-----------------------------hhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 87766554332211 34455667777889999999988888887765543
No 271
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=89.52 E-value=0.85 Score=48.99 Aligned_cols=196 Identities=11% Similarity=0.057 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHhHHHHHhhhccch---HHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL--GISQASSVLGGFLADAYLGR---YWTIAI 141 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~--~~~~~~~l~~G~lsD~~~GR---~~~~~i 141 (549)
.|+..+.++...+...+.+..+-+-........++++.+++....++.. .+.....+...+..-++ |+ |+.+..
T Consensus 260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~~ 338 (488)
T KOG2325|consen 260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIILL 338 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeeee
Confidence 3667777778888888888776666677777788888776655444433 22333333444444443 43 333433
Q ss_pred HHHHHHHHHHHHHHh-hhhc---ccCCC-CCcccccccccC-CCCCcchhhHHHHHHHH-HHHHHhccCcchhhhhhhcc
Q 008896 142 FTTIYLAGLTGITLC-ATMK---VFMPN-QDNCDRISQLLG-SCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGAD 214 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad 214 (549)
+..+......+.... .+.+ ...+. .-.|. .... =|......+...++++. ++.|.+.-.+.....++-++
T Consensus 339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~---~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCD---FEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred hHHHHHHhhheeeeeccccccccccccccccCcC---cccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 322222222221111 0000 00110 00110 0011 25555555556555553 34555555556667788899
Q ss_pred cCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 215 QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 215 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
+..+++ .+..-+++.....++..+||++...+....|.|+...+.....++.
T Consensus 416 iLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 416 ILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred HhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 999988 6777778888889999999999988888888777655544443333
No 272
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=88.79 E-value=39 Score=36.71 Aligned_cols=167 Identities=13% Similarity=0.020 Sum_probs=93.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---s~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
-++.++.+.+..|+..+.+..+ --+++.+=+ +.+....+=....+ ...+..++-.++++++ +|.+++.+.
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~l-----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTIL-----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 3556777777777766665322 222332222 22222222222222 3455566789999986 999999888
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCC---cchhhHHHH-HH-------HHHH-HHHhccCcch-hhh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP---AKSWQMLYL-YT-------VLYI-TGFGAAGIRP-CVS 209 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~-------~~~l-~g~g~g~~~~-~~~ 209 (549)
...+.....++++... |. +...||+. .|.. ....+...+ .+ ..++ .-+-.....+ .-.
T Consensus 96 ~~~F~~fF~~f~~vly-----P~---~~~lhp~~-~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW 166 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLY-----PN---RDILHPDA-FADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFW 166 (491)
T ss_pred HHHHHHHHHHHHHHHh-----hc---hhhcCCCH-HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777776665422 11 01111111 0100 000111111 11 1111 1122222223 457
Q ss_pred hhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
++..|.++.++ -.+++.++..+.|+|..++..+..++.+
T Consensus 167 ~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 167 GFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999888 7899999999999999999999888877
No 273
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=87.95 E-value=4 Score=43.68 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcch
Q 008896 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (549)
Q Consensus 106 ~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~-~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (549)
-.-....+|.++-.+|..+..+.. +-.+| +.+.+..+.-++...++.++..-+..+ .+..-
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~----------------~p~~~ 369 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSR----------------LPVFF 369 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHHHHHHHHHHHHHHHhcCCcccc----------------CCeee
Confidence 334566777787777777554431 11222 244444555555555544432110000 00000
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i 248 (549)
.+-+..++..++.|+..|-..+....+..+..++++ |..+-.+..++.++|-.+|..+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 244666777889999999888888888888887765 6666666666777776666554
No 274
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=86.78 E-value=3.7 Score=40.53 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcc
Q 008896 107 SSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (549)
Q Consensus 107 a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~---~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (549)
-+.+.+.|+++..+|.-+...|..+- |. ..+.+...+......+..+... ..|.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP~------------------ 340 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALLLPILTSS---VSPS------------------ 340 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHHHHHHHhc---cCCC------------------
Confidence 46778888887777776666665542 22 2344443333332222222111 1121
Q ss_pred hhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 008896 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~ 263 (549)
..+...-+++..+.-.+.|..+|.+.-+=....|++. |...++++....++-.-++-...---....+-|..|.
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ 414 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG 414 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence 1233334556556667778889999888888889888 9999999988887655432211000011245677888
Q ss_pred HHHHHHHHHHHH
Q 008896 264 ALAIAMGISNML 275 (549)
Q Consensus 264 i~~~~~~i~~~~ 275 (549)
++.+...++.+.
T Consensus 415 icS~~~~~a~i~ 426 (454)
T KOG4332|consen 415 ICSAFLFVASIL 426 (454)
T ss_pred hhHHHHHHHHHH
Confidence 887776666544
No 275
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=86.49 E-value=2.4 Score=44.12 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHhhccch---hHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCc
Q 008896 422 VGIGLAVSILSVIWA--GLLEFLYEEAPDA---MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 496 (549)
Q Consensus 422 i~~G~~~~~~~~~~a--~~~~~~~~~~P~~---~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n 496 (549)
+.+|+.+.+++.... ...++..++++++ .|..+-.++....++|.+++..+.+++.+..|
T Consensus 36 ~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~--------------- 100 (372)
T PF00854_consen 36 FYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG--------------- 100 (372)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS----------------
T ss_pred HHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc---------------
Confidence 345555444443332 6777888887665 56667788899999999999999888865322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 008896 497 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 528 (549)
Q Consensus 497 ~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~ 528 (549)
+...|++.++..+++++.|+...++|+.+
T Consensus 101 ---~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 101 ---WFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred ---hhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 46788888888888888888777777765
No 276
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=81.92 E-value=5.6 Score=42.52 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=41.6
Q ss_pred HHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 198 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 198 g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+......-....+.+++.|+.. -++.+++.....|+|..++..++..+.+..+
T Consensus 329 ~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 329 EVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333334455567899999888 7999999999999999999999988876554
No 277
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=78.04 E-value=4.1 Score=43.19 Aligned_cols=91 Identities=10% Similarity=-0.152 Sum_probs=55.5
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCh-H---------------HHHHHHHHHHHHHHHHHhHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSF-A---------------DSSNAVNNFLGISQASSVLG 125 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~s~-~---------------~a~~~~~~~~~~~~~~~l~~ 125 (549)
..+..++..+.+++.+++..++.+...-+...++-++ +|=++ . .-.+-+.++.....+..++.
T Consensus 273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~ 352 (498)
T KOG0637|consen 273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV 352 (498)
T ss_pred hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 3455667888899999999888876555555555332 22111 1 11244566667777888889
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 126 GFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 126 G~lsD~~~GR~~~~~i~~~l~~~g~~~~~ 154 (549)
-++.|++ |-|+.+..+...+.++..+..
T Consensus 353 ~~l~~~~-g~r~~y~~~~~~f~~~~~~~g 380 (498)
T KOG0637|consen 353 EKLSRKF-GTRKRYWGGVNAFGLATGLAG 380 (498)
T ss_pred HHHHHhc-CcceEEeehhHHHHHHHHHHh
Confidence 9999997 844444444443444443333
No 278
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=75.45 E-value=1.3e+02 Score=32.79 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=47.1
Q ss_pred HHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 008896 197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 197 ~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
.|+..-......-..+.+++|++++ +..+++-++...++-..+--++++.+.+..||+.+-.+.-+.++
T Consensus 292 Ygi~inLvE~~wK~~lk~~~~~~~~-----ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~l 360 (491)
T PF03219_consen 292 YGISINLVEVVWKSQLKQLYPDPND-----YSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVIL 360 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Confidence 4444444555555666788886653 78888887777776666666788889999999987766433333
No 279
>PRK10263 DNA translocase FtsK; Provisional
Probab=70.89 E-value=38 Score=40.81 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=7.8
Q ss_pred HHHhHHHHHhhhc
Q 008896 120 ASSVLGGFLADAY 132 (549)
Q Consensus 120 ~~~l~~G~lsD~~ 132 (549)
.+..+|.|++|.+
T Consensus 63 l~GiVGA~LAD~L 75 (1355)
T PRK10263 63 LGGMPGAWLADTL 75 (1355)
T ss_pred ccchHHHHHHHHH
Confidence 3345677777754
No 280
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=62.12 E-value=21 Score=32.09 Aligned_cols=32 Identities=6% Similarity=0.059 Sum_probs=24.1
Q ss_pred hhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 008896 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (549)
...+++++--+++++ -|++++|-.+-.|++-+
T Consensus 113 GisYGilSaSWD~~r------~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 113 GISYGILSASWDPER------EGSLLGWEEFKRNWGRM 144 (153)
T ss_pred hhhhhhcccccCCCC------CCCcccHHHHHHhHHHH
Confidence 345666677788887 79999998888887654
No 281
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=59.91 E-value=3.2 Score=42.18 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHH
Q 008896 110 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189 (549)
Q Consensus 110 ~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (549)
...+|.++-.+|..+.++.-=+. -+++.+.+..+.-++...++.++...+..+ -.++.-.+-+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~-~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~---------------~~~~~~~~d~~ 250 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPG-PSPRWLWILSLLRFLFIPLFLLCNVQPRPR---------------YLPVLFNSDAW 250 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecc-cccccHHHHHHHHHHHHHHHHHHHhhcccc---------------cCCCcccchHH
Confidence 45567788888888777642110 123333344334444433333321110000 00000124466
Q ss_pred HHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008896 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 190 ~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i 248 (549)
+++..++.|+..|-..+....+..+..++++ |..+-.+..+...+|-.+|..+
T Consensus 251 ~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 251 FIILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ----------------HHHH---------------------------------------
T ss_pred HHHHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999999988766 5555555555556665555443
No 282
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=57.79 E-value=1.3e+02 Score=29.79 Aligned_cols=33 Identities=12% Similarity=-0.128 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 008896 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
....-+|..+..+||..-|+.+-..+-||+-+.
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~ 176 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIH 176 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHH
Confidence 345566778888898888988876667777554
No 283
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=57.20 E-value=2.2e+02 Score=31.12 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=42.6
Q ss_pred HHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 194 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 194 ~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
-++..+..-.....+.++-+...++.- =|+.|.+.+...|+|+-.-..+.-++.|..
T Consensus 412 ~~l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 412 HVLSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 344556666777888899999999988 899999999999998865555555554443
No 284
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=56.06 E-value=1.8e+02 Score=27.36 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
.+....++-.+|..+++.+.+..+. +.++++.+..++..
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~l~~~~ 205 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGF-WALLLPALLLLLLA 205 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 3444445555556666667666664 45555555444333
No 285
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.91 E-value=49 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.052 Sum_probs=16.6
Q ss_pred hHHHHHhhhccchHHHHHHHHH
Q 008896 123 VLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 123 l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
.+.|||-|+|+|-++..+|...
T Consensus 60 a~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 60 AGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred HHHHHHHHHhcCCCcHHHHHHH
Confidence 4569999999998886655443
No 286
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=51.72 E-value=3.3e+02 Score=29.11 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
.....++..++.|++.+..+....++.+ .+|+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~ 136 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPS 136 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCH
Confidence 4556666777889998888888888776 5564
No 287
>COG3619 Predicted membrane protein [Function unknown]
Probab=47.95 E-value=2.7e+02 Score=26.93 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVT-------FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR 135 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-------yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR 135 (549)
+....+.+...+...++|......... .+.-++.-++..-........+...++..++..++.+. .|
T Consensus 11 ~l~~lLa~~aGfvDa~~f~~~gg~F~s~~TGN~v~~gi~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~-~~ 84 (226)
T COG3619 11 RLGLLLALVAGFVDAFGFLHLGGVFVSFMTGNLVLLGIELAEGDAALAVLLLLPILAFVLGVAAAELISRRA-TR 84 (226)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCchhhheeccHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence 334555556666666666432211122 22223333344444555556666677766666666654 54
No 288
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=44.97 E-value=58 Score=34.32 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=57.2
Q ss_pred HHHHHH-HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhh
Q 008896 108 SNAVNN-FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (549)
Q Consensus 108 ~~~~~~-~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (549)
-..+.+ |.+.-.+|.+...|+-+. +||. +.+...+-.+...++.++...+ .| ..-.+
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~-l~i~v~lR~lfiPlF~~cn~~~--~~-----------------v~~~~ 342 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWP--DPRK-LTIPVLLRLLFIPLFLLCNYPP--LP-----------------VVFES 342 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCC--CCce-ehHHHHHHHHHHHHHHHhccCC--CC-----------------ceecC
Confidence 344444 777777777777776663 4444 3444445555555555442211 01 11135
Q ss_pred HHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 187 ~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
-++++....++|+..|=...+...+...+.++++
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 5677888888999999888888888888888776
No 289
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=44.59 E-value=4.1e+02 Score=28.13 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
.....++...+.+++.|..+....+..+++ |.+.
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y 149 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY 149 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence 345555666677888888877777766654 4433
No 290
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=41.88 E-value=56 Score=36.28 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=57.3
Q ss_pred chhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
+.-+..+++--.+++|++.........-+.=+++|++- |..+.+++.....+|..++..+...+....
T Consensus 454 ~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 454 NPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred CCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777777889999999888888888889999988 999999999999999999999887665544
No 291
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=41.84 E-value=1.3e+02 Score=21.63 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 114 ~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
...+..+...+.|+..|+.+|..+...+..+
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~ 39 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTLIGL 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 3444555666788889998898665544433
No 292
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=41.14 E-value=2.7e+02 Score=31.85 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=18.6
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 130 DAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 130 D~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
|++-||.+-+.++.++++++.+...+.
T Consensus 51 ~~~~~R~~~l~~t~~~f~i~sl~v~ll 77 (704)
T TIGR01666 51 DRLTGRLKNVIFTLICFSIASFSVELL 77 (704)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444577788888888877776665543
No 293
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=40.67 E-value=5.1e+02 Score=28.17 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=50.9
Q ss_pred HHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 008896 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG-AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 196 l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig-~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~ 274 (549)
..|++.-.....--+-+.+.+|.++. +..+++-++...++- ..+.-.+++-+....||-++-.++-+.+++..+
T Consensus 293 ~Y~v~inLvE~~wKs~ik~~~~~~~~-----~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~ 367 (509)
T COG3202 293 AYGVSINLVEGVWKSGIKELYPTTNE-----YTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGV 367 (509)
T ss_pred HHHHHHHHHHHHHHHhHHHhcCChhH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455555555555666777776653 777787776665555 555666778888899998887776666666655
Q ss_pred HHH
Q 008896 275 LFF 277 (549)
Q Consensus 275 ~~~ 277 (549)
+++
T Consensus 368 lFF 370 (509)
T COG3202 368 LFF 370 (509)
T ss_pred HHH
Confidence 544
No 294
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.51 E-value=13 Score=32.52 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008896 259 GSAFGALAIAMGISNMLF 276 (549)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~ 276 (549)
||++++.+++.++.++++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 466655544444433333
No 295
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.60 E-value=50 Score=33.67 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=20.8
Q ss_pred HhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 008896 443 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 476 (549)
Q Consensus 443 ~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v 476 (549)
+.+.|..|| .|+++.+.++|++++.+++-.+
T Consensus 207 FPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 207 FPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred cccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 446787777 6777777777777776555443
No 296
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=35.65 E-value=2e+02 Score=32.82 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=20.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 129 ADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 129 sD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
-|++-||.+-++++.++++++.+...+.
T Consensus 50 ~~~~~~R~~~l~it~~~f~i~sl~v~ll 77 (701)
T TIGR01667 50 DDRLTGRLKNLIITLSCFSIASFLVQLL 77 (701)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577888888888888877766654
No 297
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=34.36 E-value=5.6e+02 Score=26.77 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh-hhhcccCCCCCcc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC-ATMKVFMPNQDNC 169 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~-~~~~~~~~~~~~~ 169 (549)
.+.+|+ +|=+..+.+.+++.|.....+|.++.=++.|-- ---+-+.+=.++-++|-+-.+.. ..+....
T Consensus 32 tLatyL---lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~-~~~~Fv~vElllgligg~Sa~~ly~~FA~~~------ 101 (508)
T COG4262 32 TLATYL---LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDA-ALARFVDVELLLGLIGGVSAAALYLLFALES------ 101 (508)
T ss_pred HHHHHh---cCCceeehHHHHHHHHHHhchhhhhhccccCch-HHHHHHHHHHHHHHhccchHHHHHHHHHhcc------
Confidence 345555 455667778888888888888877777666532 11112222222222221110000 0000000
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcc
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGAD 214 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad 214 (549)
......++++-+++|.-.|+-.|....+.-.
T Consensus 102 --------------~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 102 --------------APSRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred --------------chHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 0245667777788888888888877766644
No 298
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=32.20 E-value=2.4e+02 Score=29.84 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=44.9
Q ss_pred HHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Q 008896 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 259 (549)
Q Consensus 196 l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~ 259 (549)
+.++..-.......++.+...|++- -|+.|.+.+.-.|+|+-.-.+++.++.+..+|.
T Consensus 378 ~~~~~~ts~fv~~maf~aqisdp~i------ggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~ 435 (510)
T KOG3574|consen 378 FHQVFVTSMFVSGMAFHAQISDPAI------GGTYMTLLNTLSNLGGNWPGTVALWLADGLTVK 435 (510)
T ss_pred HhhhHHHHHHHHHHHHHhhcCCccc------CccHHHHHHHHHHhcCCcHHHHHHHhcccCcee
Confidence 3444444555667788899999988 799999999999999887778888887766554
No 299
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.26 E-value=3e+02 Score=23.24 Aligned_cols=33 Identities=6% Similarity=0.038 Sum_probs=25.7
Q ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 008896 446 APDAMKSIGSAYAALAGGLGCFAASILNSIIKS 478 (549)
Q Consensus 446 ~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~ 478 (549)
.-.+.++.++++-..+-.+++.+...+.|++.+
T Consensus 35 ~a~s~k~~~~a~klssefIsGilVGa~iG~llD 67 (116)
T COG5336 35 SAESIKGYAQAFKLSSEFISGILVGAGIGWLLD 67 (116)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999888888877777777654
No 300
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=29.10 E-value=6.7e+02 Score=26.02 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=30.9
Q ss_pred HHHHHhccCcchhhhhhhcccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHH
Q 008896 195 YITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~~~~~~~~~~~ig~~i~p 246 (549)
.++|+..+........++--+.|.-+++ +...-|..|+-+..+..+|..+-+
T Consensus 247 l~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~ 299 (354)
T PF05631_consen 247 LLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFS 299 (354)
T ss_pred HHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3567777777777788877777754421 112245555556666666665544
No 301
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=27.79 E-value=7.6e+02 Score=26.23 Aligned_cols=83 Identities=12% Similarity=-0.005 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhH
Q 008896 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (549)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (549)
|.+-.+..+.++++.+..|++..+. .+..-+.++..-.+.+.+++..+.. .+.
T Consensus 288 G~VeA~~tllgA~~al~~g~v~~~w-~~~~~l~l~~~S~l~a~~L~lm~~t--------------------------~~I 340 (412)
T PF01770_consen 288 GAVEAASTLLGAIAALLAGYVKVNW-DRWGELALGVFSLLQAGLLFLMSFT--------------------------GNI 340 (412)
T ss_pred hHHHHHHHHHHHHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hHH
Confidence 4555666677788888889985554 6655444443333333333322211 567
Q ss_pred HHHHHHHHHHHHhccCcchhhhhhhcccCC
Q 008896 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (549)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (549)
+..+++-++.+...-...+....=+|.-..
T Consensus 341 wv~Y~~yIif~~~y~fliTiA~~qIA~~l~ 370 (412)
T PF01770_consen 341 WVCYAGYIIFRSLYMFLITIASFQIAKNLS 370 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777666555544444444444444333
No 302
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=27.63 E-value=1.1e+02 Score=21.91 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHh--hhhccccccccC
Q 008896 505 WLLAVLSVINFCAFLY--SAYRYKYRSEQK 532 (549)
Q Consensus 505 ~~~a~~~~~~~~~~~~--~~~~~~~~~~~~ 532 (549)
.+..+++++.++.+.+ .+++|.+|-..+
T Consensus 5 ~iV~i~iv~~lLg~~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSICTTLKAYGYKHTVD 34 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 3444444444443333 457777775543
No 303
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.27 E-value=73 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccc
Q 008896 503 LYWLLAVLSVINFCAFLYSAYRYKYRSE 530 (549)
Q Consensus 503 ~f~~~a~~~~~~~~~~~~~~~~~~~~~~ 530 (549)
.|.++|++..+.+++ +++.+|.++|..
T Consensus 70 i~gv~aGvIg~Illi-~y~irR~~Kk~~ 96 (122)
T PF01102_consen 70 IFGVMAGVIGIILLI-SYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHS----
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHhccCC
Confidence 455555554433333 334455555543
No 304
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=26.01 E-value=6.9e+02 Score=25.19 Aligned_cols=59 Identities=12% Similarity=-0.046 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh--ccchHHHHHHHHHHHHHHHH
Q 008896 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA--YLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 87 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~--~~GR~~~~~i~~~l~~~g~~ 151 (549)
++.++-..-+.+.+|+-....++.++..... ++..-.++ -||.+|.=.++..+..+..+
T Consensus 42 g~~s~SlaLLADa~Hml~D~~al~lal~A~~------~a~r~~~~~~TfGy~R~eiLaa~~nav~Li 102 (296)
T COG1230 42 GLLTGSLALLADALHMLSDALALLLALIAIK------LARRPATKRFTFGYKRLEILAAFLNALLLI 102 (296)
T ss_pred HHHhccHHHHHhHHHHHHHHHHHHHHHHHHH------HhcCCCCCCCCccHhHHHHHHHHHHHHHHH
Confidence 4555556667777777655555544433322 22222222 25877765555554444333
No 305
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.85 E-value=3.4e+02 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=19.4
Q ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008896 446 APDAMKSIGSAYAALAGGLGCFAASILNSI 475 (549)
Q Consensus 446 ~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~ 475 (549)
+-.-+|..++|+.....+..+.+.....+.
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~gr 101 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGR 101 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 344567777777777777766666655543
No 306
>PRK03612 spermidine synthase; Provisional
Probab=25.78 E-value=4.1e+02 Score=29.13 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008896 451 KSIGSAYAALAGGLGCFAASILNSIIK 477 (549)
Q Consensus 451 rg~~~g~~~~~~~ig~~l~~~l~~~v~ 477 (549)
-|...|-..+.+.+|+++|+++.+.+.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 356677888888888888888888754
No 307
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=24.12 E-value=2.7e+02 Score=28.56 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
++.+..++..+.-|+-.|..+.+..--+.+..++++ |.-+++....+-.+|..++..++
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~------rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDV------REFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchH------HHHhHhhheecchhhHHHHHHHh
Confidence 356666777777899889888888888888888887 88888877666666666555444
No 308
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.85 E-value=2.8e+02 Score=22.69 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 259 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~ 259 (549)
.+=-++.+...+|+.+|-+ -|+.++..+|.
T Consensus 23 kaEr~~q~ilti~aiVg~i-~Gf~~Qqls~t 52 (101)
T KOG4112|consen 23 KAERFQQLILTIGAIVGFI-YGFAQQQLSVT 52 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444667777888887754 45666666664
No 309
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=23.58 E-value=46 Score=32.80 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 008896 450 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 529 (549)
Q Consensus 450 ~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~ 529 (549)
.|+..+.+......+|.++.....-.-.+.. +..+.+| ...+.+.+.+.++.+++|.++.++.+...
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~---~~~~~~W----------~~I~si~~lL~~IpLIly~ifGk~fd~~~ 69 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVV---IALTNNW----------QWILSIFILLIFIPLILYIIFGKNFDIYS 69 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHH---HHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 3555666666666777766544332210110 1112334 56777778888888899999988875544
Q ss_pred cc
Q 008896 530 EQ 531 (549)
Q Consensus 530 ~~ 531 (549)
.+
T Consensus 70 ~~ 71 (267)
T PF07672_consen 70 PK 71 (267)
T ss_pred cc
Confidence 43
No 310
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=22.38 E-value=8.7e+02 Score=25.05 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=27.4
Q ss_pred HhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 008896 443 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 476 (549)
Q Consensus 443 ~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v 476 (549)
.++.+++.|-.+|+.....-++|-+++.++.-.+
T Consensus 368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 368 HKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred hhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3557778899999999999999998888775433
No 311
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.13 E-value=3.9e+02 Score=20.90 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
+++....++++++ ++.||+.+. .+..+++.++..++++++.
T Consensus 12 l~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~ 52 (76)
T PF06645_consen 12 LMQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVV 52 (76)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhhe
Confidence 4455555666655 455666654 4556666555555555544
No 312
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.49 E-value=3.2e+02 Score=22.71 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 008896 110 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (549)
Q Consensus 110 ~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~ 155 (549)
.+...+++..+..++.|..-|+.||-.+.+.+..++.-++.-....
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
No 313
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=21.27 E-value=7.6e+02 Score=26.57 Aligned_cols=59 Identities=14% Similarity=-0.043 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHH
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAG 149 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G-R~~~~~i~~~l~~~g 149 (549)
...|.-+-..+|++.++.+.+++.-.+.+.++.++--..-- ++| |-+.++-+.+.++.-
T Consensus 34 V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~-~~g~~lP~~lG~sFafi~p 93 (451)
T COG2233 34 VLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTG-PGGSGLPSYLGSSFAFVAP 93 (451)
T ss_pred hHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcccCCCeeEechHHHHHH
Confidence 33455566789999999999998888888888876655333 323 445555555444433
No 314
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.80 E-value=88 Score=27.05 Aligned_cols=9 Identities=0% Similarity=-0.064 Sum_probs=3.4
Q ss_pred HHHHHhhcc
Q 008896 273 NMLFFIGTP 281 (549)
Q Consensus 273 ~~~~~~~~~ 281 (549)
++++++.+|
T Consensus 82 lli~y~irR 90 (122)
T PF01102_consen 82 LLISYCIRR 90 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 315
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=20.63 E-value=1.1e+03 Score=28.13 Aligned_cols=41 Identities=5% Similarity=-0.172 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY 132 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~ 132 (549)
.++...+...+|++....++.+..+ +..+.=++..+++-|.
T Consensus 953 V~~at~IG~vlGIse~VmGlTfLA~--GTSIPDlisSvivArk 993 (1096)
T TIGR00927 953 VWWAHQVGETIGISEEIMGLTILAA--GTSIPDLITSVIVARK 993 (1096)
T ss_pred HHHHHHhhhhcCCChhhhhhhhhhh--hcccHHHHHHHHHHHc
Confidence 3455566667888877666444332 4444444455544443
No 316
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.06 E-value=2.8e+02 Score=26.67 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008896 455 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 527 (549)
Q Consensus 455 ~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 527 (549)
..++.+...++.++..++.+++.. .+.||++.++.+-.++.+++++++.++
T Consensus 27 l~~~ml~a~l~~~~v~v~ig~l~~----------------------~~~~~~i~gi~~g~l~am~vl~rra~r 77 (224)
T PF13829_consen 27 LPWLMLGAFLGPIAVFVLIGLLFG----------------------SWWYWLIIGILLGLLAAMIVLSRRAQR 77 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!