Query 008896
Match_columns 549
No_of_seqs 331 out of 2456
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 3.2E-28 1.1E-32 263.4 20.0 415 68-531 11-512 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 9.5E-26 3.3E-30 241.7 32.2 185 65-281 9-198 (491)
3 4gc0_A D-xylose-proton symport 99.9 4.2E-26 1.4E-30 244.4 14.0 165 91-272 33-213 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 2.2E-22 7.4E-27 212.5 24.1 179 66-281 25-208 (451)
5 3o7q_A L-fucose-proton symport 99.9 9.2E-21 3.2E-25 199.4 30.9 181 65-278 22-228 (438)
6 2gfp_A EMRD, multidrug resista 99.8 2.6E-19 8.9E-24 184.7 14.1 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.7 5E-18 1.7E-22 178.5 9.6 169 70-269 8-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.4E-12 4.7E-17 137.1 18.3 179 68-278 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.3E-11 7.8E-16 127.3 20.0 168 69-274 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 1.2E-11 4.2E-16 129.5 14.7 176 70-280 221-400 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.4E-10 4.9E-15 123.5 10.1 186 70-282 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 1.2E-08 4.3E-13 108.2 22.5 186 70-286 278-469 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.8E-09 6.3E-14 110.6 3.2 164 69-266 199-363 (375)
14 2xut_A Proton/peptide symporte 98.1 1.9E-06 6.5E-11 92.2 5.9 90 186-281 404-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=3.2e-28 Score=263.35 Aligned_cols=415 Identities=21% Similarity=0.321 Sum_probs=248.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i 141 (549)
++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3456678888999999999999999999999999 9999999999999999999999999999995599999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
+.++..++.++++++ . +.+.++++|++.|++.+...++..++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888775 3 57788999999999999999999999999999888
Q ss_pred hhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHH
Q 008896 221 KDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 297 (549)
Q Consensus 221 ~~~~~~r~~---~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (549)
|++ .+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+++++..+..+.++++.++..+..
T Consensus 143 ------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (524)
T 2xut_A 143 ------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216 (524)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHH
Confidence 654 45558999999999999999999998999999998888777666665554444433333322222222
Q ss_pred HHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhh----hhhccccCCCCCC-------cccCc
Q 008896 298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA----LELKEDVINPSPW-------KLCTV 366 (549)
Q Consensus 298 ~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~----~~~~~~~~~~~~~-------~~~~~ 366 (549)
+.+..+.|+++...+ .... +.+.. ........+.+.++...+.... ...+. ...++| ..+..
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 217 PVIRSALLTKVEGKG-NIGL-VLALI---GGVSAAYALVNIPTLGIVAGLCCAMVLVMGF--VGAGASLQLERARKSHPD 289 (524)
T ss_dssp ----------CTTHH-HHHH-HHHHH---HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH--HHTGGGTHHHHSCCSCCS
T ss_pred HHHHHHHhhhhcccC-ccch-hhhhh---hhhhhhhhhcccchhhhhhhhhhhhhhhhcc--cccchhhHHhhhhccccH
Confidence 222222222110000 0000 00000 0000000000000000000000 00000 000122 01111
Q ss_pred hhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccC---C--------------------C------CC--CC
Q 008896 367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH---M--------------------G------HP--RG 415 (549)
Q Consensus 367 ~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~---~--------------------~------~~--~~ 415 (549)
.+.++.|+.+..++.++....++..+.+..+.+..+...++.. . + ++ ++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 2233445555555566666666666666666665554433321 0 1 11 11
Q ss_pred CCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHHH
Q 008896 416 ASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALA 461 (549)
Q Consensus 416 ~~~l~~i~~G~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~~ 461 (549)
.+...++.+|+++.+++++.. ..++++.+.+|++.||.++|+.+..
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 449 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH
Confidence 233344555555444433210 2333456889999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCCCCCcccC-CCcccchhHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 008896 462 GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 531 (549)
Q Consensus 462 ~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~-~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~ 531 (549)
.++|+.+++.+.+.+.+.++ .+|+.+ +++. ..+.|++.+++++++.++++++.++++++.++
T Consensus 450 ~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 450 VTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp HHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999999999998865332 235332 1121 12347888888899888888888877765443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=9.5e-26 Score=241.72 Aligned_cols=185 Identities=23% Similarity=0.403 Sum_probs=163.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
+++++..+.+.+..++..+++|++..+++.|++++ +|.+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 44566888999999999999999999999999998 9999999999999999999999999999999923999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.++.++..++.++++++ .+.+.++++|++.|++.+...++..++++|++|++
T Consensus 89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 140 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140 (491)
T ss_dssp HHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence 99999999999888765 45677899999999999999999999999999987
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+++++..+
T Consensus 141 ~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 141 DRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp TTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 732 7778888999999999999999999999999999999987777666666554433
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=4.2e-26 Score=244.35 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=121.9
Q ss_pred HHHHHHHHhcCC----C----hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 91 NMVTFMFYVMHK----S----FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 91 ~l~~yl~~~l~~----s----~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
...+++.++++. + ....+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++......
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 33 GTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555555532 2 34456788889999999999999999997 99999999999999999998864211100
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
... .. .-...-..+...++++|++.|+|.|+..+..+.+++|..|++. |++..++++.+..+|.
T Consensus 112 ~~~--~~--------~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 112 INP--DN--------TVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQ 175 (491)
T ss_dssp SSS--SS--------SCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHH
T ss_pred hcc--hh--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhh
Confidence 000 00 0000011578899999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHhhc--------cchHHHHHHHHHHHHHH
Q 008896 243 IVAFTLVVYIQME--------HGWGSAFGALAIAMGIS 272 (549)
Q Consensus 243 ~i~p~i~~~l~~~--------~gw~~~f~i~~~~~~i~ 272 (549)
.+++.++..+... .+||+.+.+..+..++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 176 LLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred hhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 9998888776543 34666665555444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.90 E-value=2.2e-22 Score=212.51 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=152.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+|+.++.+.+..++..+..+.+...+ +++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 346667777777777777765555554 5556677 9999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHH----hhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCCh
Q 008896 146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (549)
Q Consensus 146 ~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (549)
..++.+++++ + .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE- 152 (451)
T ss_dssp HHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred HHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence 9999998887 4 456778999999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
|++.+++++.+..+|..++|.+++++.+..| ||+.|++.++..++..++.++..+
T Consensus 153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999888888 999999888776665555444333
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.89 E-value=9.2e-21 Score=199.35 Aligned_cols=181 Identities=12% Similarity=-0.011 Sum_probs=151.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+++++.+..+.+..++..+..+.+ ..+.+++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 445666777777777777776544 4455668889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++...... .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888432110 468889999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHHHHHHHHh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.+++++.+.++|..++|.+++++. +..+ ||+.|++.++..++..+++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5544 999998776665555444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.80 E-value=2.6e-19 Score=184.70 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+.+.+..++..+........+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 345556666666665555554 445778999999999999999999999999999999997 999999999999999998
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++.++ .+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 577889999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~ 274 (549)
++++....+|..++|.+++++.+..|||+.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887766555444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.73 E-value=5e-18 Score=178.47 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+....++..+++..+.++++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 555666666666667666778899999999999999999999999999999999999999997 9999999888776553
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhH-HHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
...+...... ... ..++.++++.+++.+...+...+...+..++.. +.++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 3222111000 000 012233444344333333333333333322211 1256
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 66777777788999999999999886 58999998765553
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.45 E-value=1.4e-12 Score=137.15 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY 146 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~-GR~~~~~i~~~l~ 146 (549)
.+.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.+.+.++..++.++.|+++||++ |||+.+.++..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 356777888888888888889999999999889999999999999999999999999999999832 8888888777665
Q ss_pred H-HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
. ++.+++.+. +. .+...+.+..++.|++.++..+....++.|.+|++.
T Consensus 331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 5 454443322 10 245667777888999999988888999999999988
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.+++++...++ |..++|.+.+++.+..||++.|++.+++.+++.++.++
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888777766665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=2.3e-11 Score=127.34 Aligned_cols=168 Identities=10% Similarity=0.004 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
+.++...+..++.....+.+..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 356666677777777788888999999 8888899999999999999999999999999999997 99999999998888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+. .+.. .++..++.|++.+...+...++..|.+|++ +
T Consensus 337 ~~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~ 380 (438)
T 3o7q_A 337 ALCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------T 380 (438)
T ss_dssp HHHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------H
T ss_pred HHHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------c
Confidence 887766654 2222 334457888999999999999999998843 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~ 274 (549)
+.+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55555544 556999999999999999998 99998876655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.32 E-value=1.2e-11 Score=129.50 Aligned_cols=176 Identities=10% Similarity=0.047 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
..+...+..++....++....+++.|+.+.++.. ....+...++..++..++.+++|+++||+ |||+++.++.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 3334444334434444445556788887766532 23345556666677788899999999997 9999998888777
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++.
T Consensus 300 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------ 345 (417)
T 2cfq_A 300 SVRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------ 345 (417)
T ss_dssp HHHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 7765555432 234455566666777766666777889999999887
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 227 r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|++..++ ++....+|+.++|.++|++.+..|+...|.+.++..+++.++.+...
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999888 57788899999999999999888998888887777666665544433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.11 E-value=1.4e-10 Score=123.48 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-----HHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~-----i~~~ 144 (549)
..+.+.+..++....+......++.|+.+.++.+..+.+.......++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344455555555566666667788899888888866677777777888888889999999997 9876544 6666
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+....... ....+...++++.++.|++.+...+....+..|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGT-------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCCC-------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcCC-------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 666665555443211000 001245667777888999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
|+++.++++....+|..++|.+.+++.+. ++.+.|++.++..+++.+++++..++
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888654 66677777776666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=1.2e-08 Score=108.25 Aligned_cols=186 Identities=9% Similarity=-0.020 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+....+....+.+.+. +..+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 33333333333444444444 345666778888887777777777788889999999999997 9999999998888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+....... . .....+....+..+....+..+....+.+|.+|++. |++
T Consensus 356 ~~~l~~~~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~ 406 (491)
T 4gc0_A 356 MFSLGTAFYTQ---A--------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGK 406 (491)
T ss_dssp HHHHHHHHHTT---C--------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHH
T ss_pred HHHHHHHHhcc---c--------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHH
Confidence 77665542210 0 122222222222222233345677789999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~------~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
++++.+....+++.+++.+.+.+.+ ..++.+.|++.+++.+++.++.++..|+.+.+
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 9999988888999888887766543 34556677777777777776666666665443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.78 E-value=1.8e-09 Score=110.58 Aligned_cols=164 Identities=12% Similarity=-0.095 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH-HH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l-~~ 147 (549)
+..+...+..++.....+.+..+++.|+++.+|.+..+++...+...++..++.++.++++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566677777778888888888889999888999999999999999999999999999999997 872 2333322 22
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++......... + ..+.+.+++..++.|++.+...+....+..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245666777888899999999999999999988 56 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~ 266 (549)
++..++++...++|..++|.+.+.+.+..+|...+.+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988878887776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.12 E-value=1.9e-06 Score=92.20 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--ch-----
Q 008896 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~--gw----- 258 (549)
+...++++.++.|++.+...+....+..|.+|++. |++++++++....+|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 45567778889999999999999999999999998 999999999999999999999999987643 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcc
Q 008896 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 259 ----~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+..|++.+++.+++.+++++..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555554444333
Done!