Query 008897
Match_columns 549
No_of_seqs 161 out of 175
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 17:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 98.8 8.3E-10 1.8E-14 122.6 2.0 50 2-52 215-264 (1134)
2 PF00628 PHD: PHD-finger; Int 98.4 7.3E-08 1.6E-12 72.5 0.2 48 4-53 1-50 (51)
3 KOG4443 Putative transcription 98.3 1.5E-07 3.2E-12 103.6 1.9 71 3-81 69-139 (694)
4 smart00249 PHD PHD zinc finger 98.2 1.2E-06 2.6E-11 62.4 3.7 47 4-51 1-47 (47)
5 KOG4299 PHD Zn-finger protein 97.8 9.4E-06 2E-10 89.3 1.6 50 4-55 255-306 (613)
6 cd04718 BAH_plant_2 BAH, or Br 97.7 1.9E-05 4.1E-10 74.2 2.8 31 28-59 2-32 (148)
7 KOG1245 Chromatin remodeling c 97.7 7.4E-06 1.6E-10 97.2 -0.8 52 2-55 1108-1159(1404)
8 KOG1512 PHD Zn-finger protein 97.6 2.5E-05 5.4E-10 80.4 1.9 48 4-55 316-364 (381)
9 KOG0955 PHD finger protein BR1 97.3 0.00014 3.1E-09 84.5 3.3 54 1-58 218-273 (1051)
10 KOG0957 PHD finger protein [Ge 96.9 0.00036 7.7E-09 76.2 1.9 50 1-51 543-595 (707)
11 PF13831 PHD_2: PHD-finger; PD 96.7 0.00026 5.6E-09 52.2 -0.9 35 15-52 2-36 (36)
12 KOG0383 Predicted helicase [Ge 96.6 0.00084 1.8E-08 75.6 1.5 48 3-55 48-95 (696)
13 KOG0956 PHD finger protein AF1 96.2 0.0018 3.9E-08 72.9 1.3 51 1-55 4-58 (900)
14 KOG4323 Polycomb-like PHD Zn-f 95.3 0.0069 1.5E-07 65.8 1.3 53 2-56 168-226 (464)
15 KOG0954 PHD finger protein [Ge 94.5 0.015 3.3E-07 66.2 1.2 48 2-53 271-320 (893)
16 COG5141 PHD zinc finger-contai 93.0 0.039 8.5E-07 60.8 1.2 48 2-53 193-242 (669)
17 KOG1246 DNA-binding protein ju 91.6 0.13 2.9E-06 59.3 3.2 49 3-54 156-204 (904)
18 KOG4299 PHD Zn-finger protein 83.7 1.4 3E-05 49.9 4.7 119 3-130 48-173 (613)
19 KOG0957 PHD finger protein [Ge 79.9 1.2 2.6E-05 49.8 2.5 54 3-57 120-182 (707)
20 KOG4443 Putative transcription 76.6 0.66 1.4E-05 52.8 -0.7 53 5-58 21-75 (694)
21 PF07649 C1_3: C1-like domain; 74.3 1.4 3E-05 30.9 0.7 28 4-32 2-29 (30)
22 PF15446 zf-PHD-like: PHD/FYVE 72.1 2 4.4E-05 42.1 1.5 31 4-35 1-34 (175)
23 PF14446 Prok-RING_1: Prokaryo 70.8 2.9 6.2E-05 34.2 1.8 33 2-35 5-38 (54)
24 PF07744 SPOC: SPOC domain; I 69.9 2.9 6.3E-05 35.9 1.8 104 361-468 1-119 (119)
25 PRK14559 putative protein seri 61.5 8.7 0.00019 43.9 4.0 52 3-57 2-53 (645)
26 KOG1844 PHD Zn-finger proteins 55.0 7.6 0.00016 41.6 2.1 47 6-55 89-136 (508)
27 COG1773 Rubredoxin [Energy pro 54.3 9.4 0.0002 31.4 2.0 41 3-53 4-44 (55)
28 PF05502 Dynactin_p62: Dynacti 53.1 7.2 0.00016 43.0 1.5 35 15-56 3-37 (483)
29 PLN02400 cellulose synthase 52.9 14 0.00031 44.6 4.0 51 4-59 38-92 (1085)
30 COG4393 Predicted membrane pro 48.2 6.6 0.00014 42.3 0.3 22 4-25 336-359 (405)
31 KOG2041 WD40 repeat protein [G 48.1 12 0.00025 44.1 2.2 51 3-57 1118-1168(1189)
32 KOG1705 Uncharacterized conser 46.3 11 0.00023 34.3 1.3 60 3-64 28-91 (110)
33 KOG0956 PHD finger protein AF1 45.8 13 0.00028 43.4 2.1 81 2-83 117-210 (900)
34 PLN02189 cellulose synthase 43.9 21 0.00045 43.2 3.5 51 4-59 36-90 (1040)
35 PF13832 zf-HC5HC2H_2: PHD-zin 43.6 15 0.00031 31.8 1.7 31 2-35 55-87 (110)
36 PLN02638 cellulose synthase A 42.7 22 0.00047 43.2 3.4 51 4-59 19-73 (1079)
37 KOG1632 Uncharacterized PHD Zn 42.0 13 0.00029 39.3 1.5 51 8-59 65-118 (345)
38 PLN02436 cellulose synthase A 41.9 24 0.00051 42.9 3.5 51 4-59 38-92 (1094)
39 PLN02915 cellulose synthase A 38.9 19 0.00042 43.4 2.3 52 3-59 16-71 (1044)
40 PF03107 C1_2: C1 domain; Int 37.6 29 0.00063 24.5 2.1 29 4-33 2-30 (30)
41 KOG1473 Nucleosome remodeling 36.8 22 0.00047 43.6 2.2 47 3-54 345-391 (1414)
42 PF00130 C1_1: Phorbol esters/ 35.9 29 0.00063 26.3 2.1 34 2-36 11-46 (53)
43 PF14569 zf-UDP: Zinc-binding 34.0 9.2 0.0002 33.6 -1.0 52 3-59 10-65 (80)
44 PLN02195 cellulose synthase A 33.1 27 0.00058 42.1 2.2 50 2-56 6-59 (977)
45 cd03031 GRX_GRX_like Glutaredo 32.8 43 0.00093 31.6 3.1 42 3-53 100-141 (147)
46 PF10080 DUF2318: Predicted me 32.3 22 0.00047 32.1 1.0 27 3-30 36-64 (102)
47 KOG1734 Predicted RING-contain 32.2 10 0.00022 40.0 -1.2 59 2-64 224-289 (328)
48 PF12773 DZR: Double zinc ribb 31.6 47 0.001 25.1 2.6 41 5-57 1-41 (50)
49 KOG3896 Dynactin, subunit p62 31.5 38 0.00083 37.0 2.8 41 6-53 13-53 (449)
50 PRK04023 DNA polymerase II lar 29.6 38 0.00083 41.2 2.6 36 3-56 627-662 (1121)
51 KOG4218 Nuclear hormone recept 29.1 24 0.00051 38.6 0.8 50 3-53 16-75 (475)
52 KOG2932 E3 ubiquitin ligase in 29.0 25 0.00055 37.9 1.0 42 9-55 82-133 (389)
53 KOG1512 PHD Zn-finger protein 28.8 15 0.00032 39.2 -0.7 50 4-55 260-318 (381)
54 PF03660 PHF5: PHF5-like prote 28.6 15 0.00032 33.8 -0.7 61 4-66 29-94 (106)
55 cd00214 Calpain_III Calpain, s 28.3 1.2E+02 0.0026 27.8 5.2 69 419-494 65-145 (150)
56 cd00350 rubredoxin_like Rubred 28.1 32 0.00068 24.8 1.1 10 45-54 17-26 (33)
57 PF04981 NMD3: NMD3 family ; 26.4 44 0.00095 33.2 2.1 48 5-59 1-49 (236)
58 PF14205 Cys_rich_KTR: Cystein 24.7 55 0.0012 27.2 2.0 33 18-54 5-37 (55)
59 PF13248 zf-ribbon_3: zinc-rib 23.6 43 0.00094 23.0 1.0 23 1-24 1-23 (26)
60 COG1107 Archaea-specific RecJ- 23.1 47 0.001 38.5 1.7 52 3-55 54-105 (715)
61 KOG1473 Nucleosome remodeling 23.1 14 0.00031 45.1 -2.3 48 3-55 429-480 (1414)
62 PF10497 zf-4CXXC_R1: Zinc-fin 22.3 41 0.00089 30.2 0.9 49 3-53 8-69 (105)
63 TIGR02098 MJ0042_CXXC MJ0042 f 21.9 64 0.0014 23.2 1.7 10 1-10 1-10 (38)
64 PRK14714 DNA polymerase II lar 21.1 1.3E+02 0.0028 37.7 4.8 20 3-25 668-687 (1337)
65 COG1462 CsgG Uncharacterized p 20.9 90 0.002 32.5 3.1 63 431-495 88-151 (252)
66 KOG1973 Chromatin remodeling p 20.0 87 0.0019 32.1 2.8 13 43-55 257-269 (274)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.85 E-value=8.3e-10 Score=122.62 Aligned_cols=50 Identities=26% Similarity=0.654 Sum_probs=46.6
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCE 52 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~ 52 (549)
++-|.||+.-+-+|+||+||.|+++.||+|||++++.++|. ++|||+-|.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~-~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPV-NEWYCTNCS 264 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccc-cceecCcch
Confidence 56799999999999999999999877999999999999997 599999994
No 2
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.37 E-value=7.3e-08 Score=72.45 Aligned_cols=48 Identities=27% Similarity=0.720 Sum_probs=41.2
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCC--CCCCCCcccccCCCc
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPA--SFEDDVLWYCEDCEP 53 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~--~VPe~~~WyCp~C~s 53 (549)
+|.+||..+..+.++.|+.|+ ..+|.+|++++.. .++. ..|+|+.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~-~~~H~~C~~~~~~~~~~~~-~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCN-RWYHQECVGPPEKAEEIPS-GDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTS-CEEETTTSTSSHSHHSHHS-SSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCC-hhhCcccCCCChhhccCCC-CcEECcCCcC
Confidence 589999999999999999998 6899999999766 3333 3899999964
No 3
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.35 E-value=1.5e-07 Score=103.59 Aligned_cols=71 Identities=24% Similarity=0.531 Sum_probs=56.4
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCCCccCCCCCCCCCCCCCcchhHH
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPSTIVNPSSVLGGRCDSDSENLEI 81 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~~~~n~ss~~~~~~e~~s~~~~i 81 (549)
++|..||..|++-++++|++|+ .+||+||+.|+.+.||. +.|+|+||...+...+ -.+|..+++-..++|+
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cD-vsyh~yc~~P~~~~v~s-g~~~ckk~~~c~qc~~------~lpg~s~~~~~~~~~~ 139 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCD-VSYHCYCQKPPNDKVPS-GPWLCKKCTRCRQCDS------TLPGLSLDLQEGYLQC 139 (694)
T ss_pred eeeeeccccCCccccccccccc-ccccccccCCccccccC-cccccHHHHhhhhccc------cccccchhhhccCccc
Confidence 6899999999999999999998 69999999999999997 5999999976554444 3333445555545543
No 4
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.76 E-value=9.4e-06 Score=89.30 Aligned_cols=50 Identities=28% Similarity=0.863 Sum_probs=45.8
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCC--CCCCCCCCcccccCCCcCc
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVL--PASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~--l~~VPe~~~WyCp~C~s~~ 55 (549)
.|..|+..|....+++||.|. .+||.+||.|| +..+|. +.|||+.|....
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp-~sFH~~CLePPl~~eniP~-g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCP-RSFHQTCLEPPLEPENIPP-GSWFCPECKIKS 306 (613)
T ss_pred HHHHhCCccccccceeecCCc-hHHHHhhcCCCCCcccCCC-CccccCCCeeee
Confidence 799999999999999999998 79999999999 788997 599999998755
No 6
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.72 E-value=1.9e-05 Score=74.17 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=27.7
Q ss_pred cccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 28 VHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 28 ~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
+|+|||+|||..+|+ ++|+||.|.....+..
T Consensus 2 ~H~~CL~Ppl~~~P~-g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 2 FHLCCLRPPLKEVPE-GDWICPFCEVEKSGQS 32 (148)
T ss_pred cccccCCCCCCCCCC-CCcCCCCCcCCCCCCc
Confidence 899999999999998 6999999998776555
No 7
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.67 E-value=7.4e-06 Score=97.23 Aligned_cols=52 Identities=25% Similarity=0.670 Sum_probs=47.8
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
..-|.+|..++..+.+++|+.|+ ..+|+||++|.+..+|. ++|+|++|+...
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~-~~~h~~C~rp~~~~~~~-~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECL-SGFHLFCLRPALSSVPP-GDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhh-hhHHHHhhhhhhccCCc-CCccCCccchhh
Confidence 35699999999999999999998 68999999999999997 589999999866
No 8
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.60 E-value=2.5e-05 Score=80.36 Aligned_cols=48 Identities=19% Similarity=0.601 Sum_probs=41.2
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCccccc-CCCcCc
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCE-DCEPKV 55 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp-~C~s~~ 55 (549)
-|.|||...-++-.++||.|| +.+||||.++ ..+|. |.|.|+ .|...+
T Consensus 316 lC~IC~~P~~E~E~~FCD~CD-RG~HT~CVGL--~~lP~-G~WICD~~C~~~~ 364 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCD-RGPHTLCVGL--QDLPR-GEWICDMRCREAT 364 (381)
T ss_pred hhhccCCcccchheecccccc-CCCCcccccc--ccccC-ccchhhhHHHHhc
Confidence 589999999999999999999 5799999997 58997 699998 465433
No 9
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.30 E-value=0.00014 Score=84.48 Aligned_cols=54 Identities=26% Similarity=0.590 Sum_probs=45.7
Q ss_pred CCcccccccCcCCc--cceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCC
Q 008897 1 MVTVCQQCGDKGFY--EALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 1 mvtvC~iCGd~Gfe--DkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~ 58 (549)
+..+|+||-+..-. +.+++||+|+ .+.|.+|.+.+ -+|+ +-|+|-.|.....+.
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cn-l~VHq~Cygi~--~ipe-g~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCN-LAVHQECYGIP--FIPE-GQWLCRRCLQSPQRP 273 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCc-chhhhhccCCC--CCCC-CcEeehhhccCcCcc
Confidence 36799999887766 9999999999 68999999965 4776 699999998766655
No 10
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.94 E-value=0.00036 Score=76.21 Aligned_cols=50 Identities=24% Similarity=0.573 Sum_probs=45.8
Q ss_pred CCcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCC---cccccCC
Q 008897 1 MVTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDV---LWYCEDC 51 (549)
Q Consensus 1 mvtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~---~WyCp~C 51 (549)
|...|-||-.--+-++|++||.|. ..||+-||+|||..+|-.. -|.|.+|
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~-lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCH-LHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhh-ceeeccccCCccccCcccccCcceeeccc
Confidence 567899999999999999999998 6899999999999999743 6999999
No 11
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.72 E-value=0.00026 Score=52.17 Aligned_cols=35 Identities=37% Similarity=0.858 Sum_probs=20.0
Q ss_pred cceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCC
Q 008897 15 EALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCE 52 (549)
Q Consensus 15 DkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~ 52 (549)
+.|+.|++|+ .+.|..|-+.. .+|++.+|+|..|+
T Consensus 2 n~ll~C~~C~-v~VH~~CYGv~--~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCN-VAVHQSCYGVS--EVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS---EEEHHHHT-S--S--SS-----HHH-
T ss_pred CceEEeCCCC-CcCChhhCCcc--cCCCCCcEECCcCC
Confidence 5689999998 79999999984 67766689999985
No 12
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.59 E-value=0.00084 Score=75.60 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=41.7
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
-.|.||++.|. ++.||.|. ++||.||+++++..+|.++ |.|+.|....
T Consensus 48 e~c~ic~~~g~---~l~c~tC~-~s~h~~cl~~pl~~~p~~~-~~c~Rc~~p~ 95 (696)
T KOG0383|consen 48 EACRICADGGE---LLWCDTCP-ASFHASCLGPPLTPQPNGE-FICPRCFCPK 95 (696)
T ss_pred hhhhhhcCCCc---EEEecccc-HHHHHHccCCCCCcCCccc-eeeeeeccCC
Confidence 46999999875 78899998 7999999999999999875 9999995433
No 13
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.21 E-value=0.0018 Score=72.92 Aligned_cols=51 Identities=31% Similarity=0.742 Sum_probs=42.9
Q ss_pred CCcccccccCcC--CccceeeccC--CCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 1 MVTVCQQCGDKG--FYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 1 mvtvC~iCGd~G--feDkLLlCD~--Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
||--||+|-|-. -|.-|++||+ |- .|.|.-|-+. ..||+ +.|||-.|+.+-
T Consensus 4 MVGGCCVCSDErGWaeNPLVYCDG~nCs-VAVHQaCYGI--vqVPt-GpWfCrKCesqe 58 (900)
T KOG0956|consen 4 MVGGCCVCSDERGWAENPLVYCDGHNCS-VAVHQACYGI--VQVPT-GPWFCRKCESQE 58 (900)
T ss_pred cccceeeecCcCCCccCceeeecCCCce-eeeehhccee--EecCC-Cchhhhhhhhhh
Confidence 788999998854 4678999995 97 6999999998 48997 699999998643
No 14
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.31 E-value=0.0069 Score=65.79 Aligned_cols=53 Identities=25% Similarity=0.571 Sum_probs=39.8
Q ss_pred Ccccccc--cCcCCccceeeccCCCCCCcccccCCCCCCCC----CCCCcccccCCCcCcC
Q 008897 2 VTVCQQC--GDKGFYEALIGCEKCQTTAVHIYCLPVLPASF----EDDVLWYCEDCEPKVA 56 (549)
Q Consensus 2 vtvC~iC--Gd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~V----Pe~~~WyCp~C~s~~~ 56 (549)
+.+|.+| |..+.-+.+++|++|+ ..||.-|..++.+.. |. .+|||..|.....
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~-~~fHq~Chqp~i~~~l~~D~~-~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCR-QWYHQACHQPLIKDELAGDPF-YEWFCDVCNRGPK 226 (464)
T ss_pred cceeeeeecCCcCccceeeeecccc-cHHHHHhccCCCCHhhccCcc-ceEeehhhccchh
Confidence 3457775 6667778999999998 689999999754322 22 4899999987653
No 15
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.48 E-value=0.015 Score=66.17 Aligned_cols=48 Identities=23% Similarity=0.660 Sum_probs=40.1
Q ss_pred CcccccccCc--CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 2 vtvC~iCGd~--GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
.+.|++|... +.-+-+++||.|+ .-.|.-|-+. ..+|+ +.|.|-+|.-
T Consensus 271 dviCDvCrspD~e~~neMVfCd~Cn-~cVHqaCyGI--le~p~-gpWlCr~Cal 320 (893)
T KOG0954|consen 271 DVICDVCRSPDSEEANEMVFCDKCN-ICVHQACYGI--LEVPE-GPWLCRTCAL 320 (893)
T ss_pred cceeceecCCCccccceeEEeccch-hHHHHhhhce--eecCC-CCeeehhccc
Confidence 5789999755 5566799999999 5799999997 48997 6999999964
No 16
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.03 E-value=0.039 Score=60.79 Aligned_cols=48 Identities=23% Similarity=0.677 Sum_probs=39.9
Q ss_pred CcccccccCcCC--ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 2 VTVCQQCGDKGF--YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 2 vtvC~iCGd~Gf--eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
.-.|-+|-.... .+.+++||+|+ .+.|.-|-+.+ -+|+ |-|+|-.|.-
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~-i~VHq~CYGI~--f~pe-G~WlCrkCi~ 242 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCE-ICVHQSCYGIQ--FLPE-GFWLCRKCIY 242 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcc-hhhhhhcccce--ecCc-chhhhhhhcc
Confidence 456888877655 57899999998 79999999985 6886 6999999974
No 17
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=91.56 E-value=0.13 Score=59.26 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=43.2
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
..|..|+....+..+ +|+.|+ ..+|+||+++++..+|+ ++|.|+.|...
T Consensus 156 ~~~~~~~k~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 204 (904)
T KOG1246|consen 156 PQCNTCSKGKEEKLL-LCDSCD-DSYHTYCLRPPLTRVPD-GDWRCPKCIPT 204 (904)
T ss_pred hhhhccccCCCccce-eccccc-CcccccccCCCCCcCCc-CcccCCccccc
Confidence 568899999999555 999998 47999999999999997 58999999876
No 18
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.66 E-value=1.4 Score=49.90 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=79.2
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCCCccCCCCCCCC-------CCCCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPSTIVNPSSVLGG-------RCDSD 75 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~~~~n~ss~~~~-------~~e~~ 75 (549)
+.|.+|-..|+ ++.|+.|. .++|.-|-+++++.---...|.|..|...+.....+.|+-+.++. ..-|+
T Consensus 48 ts~~~~~~~gn---~~~~~~~~-~s~h~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~sn~~~~vnk~~~~~~~r~r~~~ 123 (613)
T KOG4299|consen 48 TSCGICKSGGN---LLCCDHCP-ASFHLECDKPPLSPDLKGSEINCSRCPKGREDSEKSNNSPSVNKLVRKSGKRTRTWS 123 (613)
T ss_pred hhcchhhhcCC---ccccccCc-cccchhccCcccCcccccccccccCCCcccccccccccCCCccchhhhhcccccCcc
Confidence 57899998887 68999998 699999999877622224589999998876666666666666544 23333
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhccccccccccchhhhhhhcCCCCchhhhh
Q 008897 76 SENLEIVQATQSNLRLKKNAVDRLSKNERKRNDSGSLAKAEVQKSGNSSSYLLQV 130 (549)
Q Consensus 76 s~~~~i~~~~q~~~~~~~~~~~r~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (549)
|+. ...-+.++.+++.++.| +|..+.-+ ...++..+.++...+.+-..|.
T Consensus 124 --y~~-~~vr~~~~E~~~~~~a~-~~~~~~~~-p~~~r~~n~lk~~t~~~~~~~~ 173 (613)
T KOG4299|consen 124 --YTD-GLVRSEKTELKKVPHAR-QKDRFAEV-PDSFRDKNSLKYLTSLQNDVQE 173 (613)
T ss_pred --ccc-cccccchhhhhcccccc-cccccccC-CCcchhhhhhhhhhcccccccc
Confidence 221 12222678889999999 33332222 4566777777766655555554
No 19
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=79.88 E-value=1.2 Score=49.79 Aligned_cols=54 Identities=30% Similarity=0.629 Sum_probs=38.2
Q ss_pred cccccccCcC--CccceeeccCCCCCCcccccCCCC-CCCCCCC------CcccccCCCcCcCC
Q 008897 3 TVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPVL-PASFEDD------VLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~G--feDkLLlCD~Cd~~A~HtYCL~~~-l~~VPe~------~~WyCp~C~s~~~~ 57 (549)
+.|++|-... +.+-.+.||+|. .-.|--|-++. -++||.+ ..|||.-|+--+.-
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CG-i~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~ 182 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCG-INVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL 182 (707)
T ss_pred eEEEEeecCccccccceeeccccC-ceecccccccccccccCCCCccCCCCchhhhhHhcCCCC
Confidence 3799996554 445589999998 57999999873 1122321 37999999876643
No 20
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=76.64 E-value=0.66 Score=52.80 Aligned_cols=53 Identities=28% Similarity=0.595 Sum_probs=37.4
Q ss_pred cccccC--cCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCC
Q 008897 5 CQQCGD--KGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 5 C~iCGd--~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~ 58 (549)
|.+||. .+-+..++.|..|. ..||.||....+...--.+-|-|+.|+--.+.+
T Consensus 21 c~l~~s~G~~~ag~m~ac~~c~-~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 21 CPLCGSSGKGRAGRLLACSDCG-QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred hhhhccccccccCcchhhhhhc-ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 445654 45677799999998 689999999543333212359999998666555
No 21
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=74.28 E-value=1.4 Score=30.88 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=13.0
Q ss_pred ccccccCcCCccceeeccCCCCCCccccc
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYC 32 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYC 32 (549)
.|.+||..+..+....|..|++ ..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf-~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF-DLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT------HHH
T ss_pred cCCcCCCcCCCCceEECccCCC-ccChhc
Confidence 6999999999999999999995 689877
No 22
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=72.05 E-value=2 Score=42.08 Aligned_cols=31 Identities=32% Similarity=0.765 Sum_probs=27.0
Q ss_pred ccccc---cCcCCccceeeccCCCCCCcccccCCC
Q 008897 4 VCQQC---GDKGFYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 4 vC~iC---Gd~GfeDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
+|.+| |+......|++|-+|- .+||.-||++
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs-~sYHk~CLG~ 34 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCS-SSYHKACLGP 34 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccC-hHHHhhhcCC
Confidence 58899 6677778899999997 7999999996
No 23
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.80 E-value=2.9 Score=34.16 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=28.1
Q ss_pred CcccccccCcCC-ccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
...|.+||+.=. .|-.+.|..|. ..+|+-|-..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~Cg-apyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECG-APYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCC-CcccHHHHhh
Confidence 578999999874 77799999998 7999999754
No 24
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=69.94 E-value=2.9 Score=35.87 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=57.8
Q ss_pred eeeEEEEcCCCcccccccceecCcchhHHHH----HHHhhCCcccCCcc-ccCCCCCccccccCCCCCCceeEEec--C-
Q 008897 361 WKGNLRLSSDKYGSIEGLVAHLSTSACSKVF----QEAKLLPQLLCPEL-LPRSNSWPKSFHKWGPSDDNIALYLF--P- 432 (549)
Q Consensus 361 W~G~F~Is~~~~~~~~GLqAHLStkAc~KV~----E~SK~LP~vL~lE~-LPR~~vWPksFe~sgPtdddIaLYFF--P- 432 (549)
|+|.+.+.+-. .....||+=+.. .... .-....|..|.+.. |+...+|.=.-+......-.|-++=| |
T Consensus 1 W~G~i~m~~~~---~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~ 76 (119)
T PF07744_consen 1 WQGTISMKSVA---SFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPE 76 (119)
T ss_dssp EEEEEEETT-E---EEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSH
T ss_pred CceEEEcCCCC---eEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCc
Confidence 99999998831 134455542222 1111 11123377766543 45555665555555555546666666 4
Q ss_pred -CCCCChHHHHHHHHHHHhccceeeEeec------ceeEEeee
Q 008897 433 -NNERSEKVYDSLVHDMISHDVALRAVVK------NAALLLFT 468 (549)
Q Consensus 433 -d~ER~ek~yD~LVe~MI~~DLALRavI~------~AELLIFP 468 (549)
+.......|+.|++.+..++-+=-+.++ ..+|-|||
T Consensus 77 ~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 77 SDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred ccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 3455677999999999999988666666 47788887
No 25
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=61.49 E-value=8.7 Score=43.93 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=39.5
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
..|+-||-.- ++---+|.+|.....|..|-.-. ..+|. +.-||+.|-...+.
T Consensus 2 ~~Cp~Cg~~n-~~~akFC~~CG~~l~~~~Cp~CG-~~~~~-~~~fC~~CG~~~~~ 53 (645)
T PRK14559 2 LICPQCQFEN-PNNNRFCQKCGTSLTHKPCPQCG-TEVPV-DEAHCPNCGAETGT 53 (645)
T ss_pred CcCCCCCCcC-CCCCccccccCCCCCCCcCCCCC-CCCCc-ccccccccCCcccc
Confidence 4899999875 45566999998766778888763 56776 58899999776543
No 26
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=55.02 E-value=7.6 Score=41.59 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=38.8
Q ss_pred ccccCcCC-ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 6 QQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 6 ~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
++||-... ..+.+.|+.|. ..+|.+|++.....-|+ .-.|..|..+.
T Consensus 89 c~c~~~~~~~g~~i~c~~c~-~Wqh~~C~g~~~~~~p~--~y~c~~c~~~~ 136 (508)
T KOG1844|consen 89 CDCGLEDDMEGLMIQCDWCG-RWQHKICCGSFKSTKPD--KYVCEICTPRN 136 (508)
T ss_pred cccccccCCCceeeCCcccC-cccCceeeeecCCCCch--hceeeeecccc
Confidence 46999999 89999999998 68999999986555554 67899998655
No 27
>COG1773 Rubredoxin [Energy production and conversion]
Probab=54.31 E-value=9.4 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=27.5
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
-.|.+||-+=+|++=. ..+--|-+-+-..+|+ +|+||.|--
T Consensus 4 ~~C~~CG~vYd~e~Gd--------p~~gi~pgT~fedlPd--~w~CP~Cg~ 44 (55)
T COG1773 4 WRCSVCGYVYDPEKGD--------PRCGIAPGTPFEDLPD--DWVCPECGV 44 (55)
T ss_pred eEecCCceEeccccCC--------ccCCCCCCCchhhCCC--ccCCCCCCC
Confidence 4688888776666532 2333444555578887 699999974
No 28
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=53.10 E-value=7.2 Score=42.96 Aligned_cols=35 Identities=29% Similarity=0.669 Sum_probs=27.5
Q ss_pred cceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 15 EALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 15 DkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
+.|++|..|. ..-..||... +|. .||||.|.....
T Consensus 3 ~~L~fC~~C~-~irc~~c~~~---Ei~---~~yCp~CL~~~p 37 (483)
T PF05502_consen 3 EELYFCEHCH-KIRCPRCVSE---EID---SYYCPNCLFEVP 37 (483)
T ss_pred ccceeccccc-ccCChhhccc---ccc---eeECccccccCC
Confidence 4589999998 4677888887 453 699999998763
No 29
>PLN02400 cellulose synthase
Probab=52.92 E-value=14 Score=44.64 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=38.6
Q ss_pred ccccccCc----CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 4 VCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 4 vC~iCGd~----GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
+|+||||. .+-|.-+-|++|.+ +.=.=|... +-- ++--.||.|+++-.+-.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaF-PVCRpCYEY---ERk-eGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAF-PVCRPCYEY---ERK-DGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCC-ccccchhhe---ecc-cCCccCcccCCcccccc
Confidence 89999997 45567799999985 666677765 333 46899999998776544
No 30
>COG4393 Predicted membrane protein [Function unknown]
Probab=48.18 E-value=6.6 Score=42.35 Aligned_cols=22 Identities=32% Similarity=0.976 Sum_probs=19.4
Q ss_pred ccccccCcCC--ccceeeccCCCC
Q 008897 4 VCQQCGDKGF--YEALIGCEKCQT 25 (549)
Q Consensus 4 vC~iCGd~Gf--eDkLLlCD~Cd~ 25 (549)
+|.+|||.|+ ++-+++|-+|+.
T Consensus 336 AC~iCGd~GYv~e~dqvICv~C~V 359 (405)
T COG4393 336 ACDICGDQGYVMEGDQVICVRCDV 359 (405)
T ss_pred HHHhccccceEeECCEEEEEEccE
Confidence 7999999997 567999999984
No 31
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=48.07 E-value=12 Score=44.14 Aligned_cols=51 Identities=25% Similarity=0.639 Sum_probs=35.2
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
+.|.+||.+-++. -+.|.+|+.++. -|..-- ..+.+...|.|+.|+..+..
T Consensus 1118 vdc~~cg~~i~~~-~~~c~ec~~kfP--~CiasG-~pIt~~~fWlC~~CkH~a~~ 1168 (1189)
T KOG2041|consen 1118 VDCSVCGAKIDPY-DLQCSECQTKFP--VCIASG-RPITDNIFWLCPRCKHRAHQ 1168 (1189)
T ss_pred eeeeecCCcCCcc-CCCChhhcCcCc--eeeccC-CccccceEEEcccccccccc
Confidence 5699999876554 678999995433 354321 23555669999999987643
No 32
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=46.30 E-value=11 Score=34.35 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=40.8
Q ss_pred cccccccCcCCccce-eeccCCCCCCcccccCCCCCCCCCCCCcccccCCC---cCcCCCCCccCC
Q 008897 3 TVCQQCGDKGFYEAL-IGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCE---PKVAKPSTIVNP 64 (549)
Q Consensus 3 tvC~iCGd~GfeDkL-LlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~---s~~~~~~~~~n~ 64 (549)
--|.||..--.|-.| -+|++|+++.+..-|.---+..|.+ ..||.+|. -+++|=+.++|-
T Consensus 28 gkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d--~~yc~ectr~ekdrdgCpri~nl 91 (110)
T KOG1705|consen 28 GKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSD--AYYCKECTRQEKDRDGCPKIVNL 91 (110)
T ss_pred CcccccccccccceeeeeehhcCCccccCceEEecCCcccc--hHHHHHHHhhccccccChhhhhc
Confidence 358888877666554 5899999888886665433335654 79999996 344565655554
No 33
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=45.76 E-value=13 Score=43.44 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=49.8
Q ss_pred CcccccccCcCCccce-----eecc--CCCCCCcccccCCCC--C--CC-CCCCCcccccCCCcCcCCCCCccCCCCC-C
Q 008897 2 VTVCQQCGDKGFYEAL-----IGCE--KCQTTAVHIYCLPVL--P--AS-FEDDVLWYCEDCEPKVAKPSTIVNPSSV-L 68 (549)
Q Consensus 2 vtvC~iCGd~GfeDkL-----LlCD--~Cd~~A~HtYCL~~~--l--~~-VPe~~~WyCp~C~s~~~~~~~~~n~ss~-~ 68 (549)
+.-|.||...|.|.+- +.|. +|+ .+||..|..-. | +. .-.+..-||--|+..-.+-.++-+.+.- .
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~Ck-qaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlkk~~~~k~ips 195 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCK-QAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLKKSPAIKVIPS 195 (900)
T ss_pred cceeeeecccCCccccccccceecccccch-hhhhhhHhhhhccceeccccccccceechhHHHHHHHhhcCCCcccCCC
Confidence 3569999999988764 5675 587 79999997521 0 01 1113468999998766555544444443 2
Q ss_pred CCCCCCCcchhHHHH
Q 008897 69 GGRCDSDSENLEIVQ 83 (549)
Q Consensus 69 ~~~~e~~s~~~~i~~ 83 (549)
....++++...|...
T Consensus 196 y~~s~s~s~s~q~~s 210 (900)
T KOG0956|consen 196 YKPSQSASPSVQQLS 210 (900)
T ss_pred CccccccCCchhhhh
Confidence 334555555555443
No 34
>PLN02189 cellulose synthase
Probab=43.87 E-value=21 Score=43.20 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=39.5
Q ss_pred ccccccCc----CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 4 VCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 4 vC~iCGd~----GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
+|+||||. .+-+.-.-|.+|.+ +.=.-|... +-- ++--.||.|+++-.+-.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~f-pvCr~Cyey---er~-eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGF-PVCRPCYEY---ERR-EGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCC-ccccchhhh---hhh-cCCccCcccCCchhhcc
Confidence 89999998 66778899999984 677778865 333 46899999998775433
No 35
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=43.65 E-value=15 Score=31.78 Aligned_cols=31 Identities=35% Similarity=0.656 Sum_probs=25.9
Q ss_pred CcccccccCcCCccceeeccC--CCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~--Cd~~A~HtYCL~~ 35 (549)
...|.+|+.. ...++.|.. |. .+||.+|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~-~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCS-TAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCC-cCCCHHHHHH
Confidence 4579999998 456999999 98 6899999864
No 36
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=42.73 E-value=22 Score=43.20 Aligned_cols=51 Identities=29% Similarity=0.559 Sum_probs=38.3
Q ss_pred ccccccCc----CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 4 VCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 4 vC~iCGd~----GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
+|+||||. -+-|.-+-|.+|.+ +.=.=|..+ +-- ++.-.||.|+++-.+-.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~F-PVCrpCYEY---Er~-eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAF-PVCRPCYEY---ERK-DGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCC-ccccchhhh---hhh-cCCccCCccCCchhhhc
Confidence 89999997 45567789999985 666677765 333 36899999998775443
No 37
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=42.00 E-value=13 Score=39.31 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=43.1
Q ss_pred ccCcCCcc-ceeeccCCCCCCccccc--CCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 8 CGDKGFYE-ALIGCEKCQTTAVHIYC--LPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 8 CGd~GfeD-kLLlCD~Cd~~A~HtYC--L~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
|-...+++ +...|+.|- ..+|.-| .+.+-..+|....|||.+|....++-.
T Consensus 65 ~~~~~~p~~~~~~cd~C~-~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~ 118 (345)
T KOG1632|consen 65 CYKPCDPDDLMEQCDLCE-DWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMS 118 (345)
T ss_pred cccccCchhhhhcccccc-ccccccccccCchhhcCCccccccccccchhhhhhh
Confidence 45555665 778999998 5799999 998888899888999999999988776
No 38
>PLN02436 cellulose synthase A
Probab=41.90 E-value=24 Score=42.91 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=38.4
Q ss_pred ccccccCc----CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 4 VCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 4 vC~iCGd~----GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
+|+||||. -+-|+-.-|++|.+ +.=.-|... +-- ++.-.||.|+++-.+-.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~f-pvCr~Cyey---er~-eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAF-PVCRPCYEY---ERR-EGNQACPQCKTRYKRIK 92 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCC-ccccchhhh---hhh-cCCccCcccCCchhhcc
Confidence 89999996 45567789999984 677778865 333 46899999998776433
No 39
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=38.93 E-value=19 Score=43.44 Aligned_cols=52 Identities=19% Similarity=0.496 Sum_probs=38.4
Q ss_pred cccccccCc----CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 3 TVCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 3 tvC~iCGd~----GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
-+|+||||. -+-|.-+-|.+|.+ +.=.-|... +.- ++.-.||.|+++-.+-.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~f-pvCr~cyey---e~~-~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGF-PVCKPCYEY---ERS-EGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCC-ccccchhhh---hhh-cCCccCCccCCchhhhc
Confidence 479999997 34557789999984 666677765 333 36899999998776433
No 40
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=37.65 E-value=29 Score=24.47 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=24.0
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccC
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCL 33 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL 33 (549)
.|.+|+...+....-.|+.|. ...|.-|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~-f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECC-FTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCC-CeEcCccC
Confidence 589999888877688899999 57998874
No 41
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=36.78 E-value=22 Score=43.59 Aligned_cols=47 Identities=32% Similarity=0.730 Sum_probs=40.6
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
-+|..|-|.|+ +++|..|. +.+|.-|..+|.-++|.+ +|-|.-|...
T Consensus 345 dhcrf~~d~~~---~lc~Et~p-rvvhlEcv~hP~~~~~s~-~~e~evc~~h 391 (1414)
T KOG1473|consen 345 DHCRFCHDLGD---LLCCETCP-RVVHLECVFHPRFAVPSA-FWECEVCNIH 391 (1414)
T ss_pred ccccccCcccc---eeecccCC-ceEEeeecCCccccCCCc-cchhhhhhhh
Confidence 46888888775 89999998 579999999999999985 9999999843
No 42
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=35.89 E-value=29 Score=26.26 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=26.9
Q ss_pred CcccccccCcC--CccceeeccCCCCCCcccccCCCC
Q 008897 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPVL 36 (549)
Q Consensus 2 vtvC~iCGd~G--feDkLLlCD~Cd~~A~HtYCL~~~ 36 (549)
.+.|.+|+..= ..-.-+.|..|+ ...|..|+...
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~-~~~H~~C~~~~ 46 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCG-LVCHKKCLSKV 46 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT--EEETTGGCTS
T ss_pred CCCCcccCcccCCCCCCeEEECCCC-ChHhhhhhhhc
Confidence 46799999876 667789999998 68999999873
No 43
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.98 E-value=9.2 Score=33.58 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=23.4
Q ss_pred cccccccCc----CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 3 TVCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 3 tvC~iCGd~----GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
.+|+||||. .+-++-+.|.+|.+ +.=.-|... +.- ++.-.|+.|.++-.+-.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~f-PvCr~CyEY---Erk-eg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAF-PVCRPCYEY---ERK-EGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS------HHHHHH---HHH-TS-SB-TTT--B----T
T ss_pred cccccccCccccCCCCCEEEEEcccCC-ccchhHHHH---Hhh-cCcccccccCCCccccc
Confidence 589999984 45678899999985 566667765 333 35789999997665444
No 44
>PLN02195 cellulose synthase A
Probab=33.10 E-value=27 Score=42.07 Aligned_cols=50 Identities=22% Similarity=0.565 Sum_probs=37.0
Q ss_pred CcccccccC----cCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 2 VTVCQQCGD----KGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 2 vtvC~iCGd----~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
..+|++||| ..+-+.-+-|++|.+ +.=.=|... +-- +|.--||.|+++-.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~-pvCrpCyey---er~-eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSY-PLCKACLEY---EIK-EGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCC-ccccchhhh---hhh-cCCccCCccCCccc
Confidence 358999999 344467789999984 677778765 333 46899999998654
No 45
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=32.83 E-value=43 Score=31.61 Aligned_cols=42 Identities=21% Similarity=0.714 Sum_probs=30.1
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
.+|..||+.+| +.|..|+ +.--.|-.+. .......-|++|-+
T Consensus 100 ~~C~~Cgg~rf----v~C~~C~-Gs~k~~~~~~----~~~~~~~rC~~Cne 141 (147)
T cd03031 100 GVCEGCGGARF----VPCSECN-GSCKVFAENA----TAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCcCe----EECCCCC-CcceEEeccC----cccccEEECCCCCc
Confidence 36999999986 8999998 6555554432 13345688999976
No 46
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=32.34 E-value=22 Score=32.12 Aligned_cols=27 Identities=30% Similarity=0.966 Sum_probs=21.2
Q ss_pred cccccccCcCCcc--ceeeccCCCCCCccc
Q 008897 3 TVCQQCGDKGFYE--ALIGCEKCQTTAVHI 30 (549)
Q Consensus 3 tvC~iCGd~GfeD--kLLlCD~Cd~~A~Ht 30 (549)
-+|++||+.|+.. -.+.|..|+. .+++
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~-~~~~ 64 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGV-RFNL 64 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCC-EEeh
Confidence 3799999999864 4799999984 4554
No 47
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.19 E-value=10 Score=40.03 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=41.3
Q ss_pred CcccccccCcCCccc-------eeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCCCccCC
Q 008897 2 VTVCQQCGDKGFYEA-------LIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPSTIVNP 64 (549)
Q Consensus 2 vtvC~iCGd~GfeDk-------LLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~~~~n~ 64 (549)
+.+|-+||..=+-++ -.+==.|+. .+|-+|.+.- --| +---+||-|+++++-..-.+||
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnH-vFHEfCIrGW-civ--GKkqtCPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNH-VFHEFCIRGW-CIV--GKKQTCPYCKEKVDLKRMFSNP 289 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeeccc-chHHHhhhhh-eee--cCCCCCchHHHHhhHhhhccCc
Confidence 578999998877665 334446774 6999999862 122 2367999999998766544444
No 48
>PF12773 DZR: Double zinc ribbon
Probab=31.57 E-value=47 Score=25.05 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=26.3
Q ss_pred cccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 5 CQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 5 C~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
|..||..-.++ ..+|..|..... .+....++|+.|-...+.
T Consensus 1 Cp~Cg~~~~~~-~~fC~~CG~~l~-----------~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 1 CPHCGTPNPDD-AKFCPHCGTPLP-----------PPDQSKKICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCcc-ccCChhhcCChh-----------hccCCCCCCcCCcCCCcC
Confidence 67788875555 778999974322 112236888888776543
No 49
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=31.48 E-value=38 Score=36.96 Aligned_cols=41 Identities=20% Similarity=0.481 Sum_probs=30.1
Q ss_pred ccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 6 QQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 6 ~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
+.||...--.-|++|.-|- -+-|..-.+-+|. .-||+.|.+
T Consensus 13 c~cg~~~pl~~L~FCRyC~----klrc~~Cv~hEvd---shfCp~CLE 53 (449)
T KOG3896|consen 13 CTCGKFRPLPDLVFCRYCF----KLRCDDCVLHEVD---SHFCPRCLE 53 (449)
T ss_pred eeccccccccceeeeeccc----ccccccccccccc---cccchhhcc
Confidence 4688877778899999985 3455554444664 489999998
No 50
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.63 E-value=38 Score=41.18 Aligned_cols=36 Identities=28% Similarity=0.719 Sum_probs=25.1
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
..|.-||... ..+.|.+|.. | + ...|+|++|.....
T Consensus 627 RfCpsCG~~t---~~frCP~CG~---~-----------T-e~i~fCP~CG~~~~ 662 (1121)
T PRK04023 627 RKCPSCGKET---FYRRCPFCGT---H-----------T-EPVYRCPRCGIEVE 662 (1121)
T ss_pred ccCCCCCCcC---CcccCCCCCC---C-----------C-CcceeCccccCcCC
Confidence 4688898886 5589999973 1 2 23688888866543
No 51
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=29.07 E-value=24 Score=38.60 Aligned_cols=50 Identities=26% Similarity=0.609 Sum_probs=31.9
Q ss_pred cccccccCc--CCccceeeccCCCCCCccc--------ccCCCCCCCCCCCCcccccCCCc
Q 008897 3 TVCQQCGDK--GFYEALIGCEKCQTTAVHI--------YCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 3 tvC~iCGd~--GfeDkLLlCD~Cd~~A~Ht--------YCL~~~l~~VPe~~~WyCp~C~s 53 (549)
--|++|||+ |+--=|+.|..|+ ++|-. -|....--.|...----||.|+-
T Consensus 16 ElCPVCGDkVSGYHYGLLTCESCK-GFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHYGLLTCESCK-GFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccCccccceeeeeehhhhh-hHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 369999996 7777899999997 77754 35544322333222345666654
No 52
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=25 Score=37.85 Aligned_cols=42 Identities=26% Similarity=0.600 Sum_probs=28.1
Q ss_pred cCcCCccceeeccCCCCCC----------cccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 9 GDKGFYEALIGCEKCQTTA----------VHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 9 Gd~GfeDkLLlCD~Cd~~A----------~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
|.+..-...-+||+|++ . -|.||++-. ..+ .+-.|+.|...+
T Consensus 82 gek~l~p~VHfCd~Cd~-PI~IYGRmIPCkHvFCl~CA---r~~-~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 82 GEKQLGPRVHFCDRCDF-PIAIYGRMIPCKHVFCLECA---RSD-SDKICPLCDDRV 133 (389)
T ss_pred cccccCcceEeecccCC-cceeeecccccchhhhhhhh---hcC-ccccCcCcccHH
Confidence 45556666789999985 3 367788763 222 267888887655
No 53
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=28.78 E-value=15 Score=39.17 Aligned_cols=50 Identities=26% Similarity=0.590 Sum_probs=35.3
Q ss_pred ccccccC------cCCccceeeccCCCCCCcccccCCCCCCCC---CCCCcccccCCCcCc
Q 008897 4 VCQQCGD------KGFYEALIGCEKCQTTAVHIYCLPVLPASF---EDDVLWYCEDCEPKV 55 (549)
Q Consensus 4 vC~iCGd------~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~V---Pe~~~WyCp~C~s~~ 55 (549)
.|.+|=+ .|-.+-++.|.-|. .++|-||+.-++.-| -.+ .|-|.+|+.-.
T Consensus 260 ~~~~~~~~~~~~~~~r~~S~I~C~~C~-~~~HP~Ci~M~~elv~~~KTY-~W~C~~C~lC~ 318 (381)
T KOG1512|consen 260 ERKHFWDIQTNIIQSRRNSWIVCKPCA-TRPHPYCVAMIPELVGQYKTY-FWKCSSCELCR 318 (381)
T ss_pred hhhhhhcchhhhhhhhhccceeecccc-cCCCCcchhcCHHHHhHHhhc-chhhcccHhhh
Confidence 4556644 35567789999997 799999998643222 123 79999998654
No 54
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=28.60 E-value=15 Score=33.78 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=28.1
Q ss_pred ccccccCcCCccc-eeeccCCCCCCcccccCCCC-CCCCCCCCcccccCC---CcCcCCCCCccCCCC
Q 008897 4 VCQQCGDKGFYEA-LIGCEKCQTTAVHIYCLPVL-PASFEDDVLWYCEDC---EPKVAKPSTIVNPSS 66 (549)
Q Consensus 4 vC~iCGd~GfeDk-LLlCD~Cd~~A~HtYCL~~~-l~~VPe~~~WyCp~C---~s~~~~~~~~~n~ss 66 (549)
-|.+|.+--.|-. --+||+|.++.+..-|.-=- ...+ ....||.+| +.+++|=+-+.|-.|
T Consensus 29 kCpiCDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~--sdAYYC~eC~~lEKdRDGCPriiN~Gs 94 (106)
T PF03660_consen 29 KCPICDSYVRPCTKVRICDECSFGSLQGRCIICGSGPGV--SDAYYCWECVRLEKDRDGCPRIINVGS 94 (106)
T ss_dssp --TTT-------EE-EEEHHHHTSSTTSB-TTTSSSB----EE-EE-HHHHHHTSTTS----B-S-SS
T ss_pred cccccCCccCCcceEEECCcCCCCCcCceEEEecCCCCc--ccceehhhhHhhhccccCCceeEeccc
Confidence 4788887666544 45899999887777776431 1123 247999999 678888888888444
No 55
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=28.29 E-value=1.2e+02 Score=27.83 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=46.6
Q ss_pred CCCCCCceeEEecCCCC---CChHHHHHHHHH---------HHhccceeeEeecceeEEeeecCCCCccccccccceeEE
Q 008897 419 WGPSDDNIALYLFPNNE---RSEKVYDSLVHD---------MISHDVALRAVVKNAALLLFTSNLLPFQFWRFQSKFYLW 486 (549)
Q Consensus 419 sgPtdddIaLYFFPd~E---R~ek~yD~LVe~---------MI~~DLALRavI~~AELLIFPS~lLP~~~QrfngK~YLW 486 (549)
.++....||++.|-... +....| |+.. .-.+...++..+.-.+.+|.||+..|.+. |+|.|.
T Consensus 65 ~~~~~~~IGf~v~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~rev~~~~~L~pG~YvIIPsT~~p~~~----g~F~Lr 138 (150)
T cd00214 65 KGLDLLTIGFHVYKVPGENRHLRRDF--FLHKAPRARSSTFINTREVSLRFRLPPGEYVIVPSTFEPGEE----GEFLLR 138 (150)
T ss_pred cCCCcceEEEEEEEeCCcCcccChhh--hhccCcccccCccccccEEEEEEEcCCCCEEEEeeecCCCCc----ccEEEE
Confidence 35667789999997422 222222 2222 23467888888888899999999999654 566676
Q ss_pred Eeeeeccc
Q 008897 487 GVFRAKQA 494 (549)
Q Consensus 487 GVFR~rK~ 494 (549)
||-.+..
T Consensus 139 -Vfs~~~~ 145 (150)
T cd00214 139 -VFSEKSI 145 (150)
T ss_pred -EEecCCC
Confidence 7776643
No 56
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.14 E-value=32 Score=24.80 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=8.1
Q ss_pred cccccCCCcC
Q 008897 45 LWYCEDCEPK 54 (549)
Q Consensus 45 ~WyCp~C~s~ 54 (549)
+|.||.|...
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 6999999764
No 57
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=26.37 E-value=44 Score=33.18 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=34.5
Q ss_pred cccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCC-CcccccCCCcCcCCCC
Q 008897 5 CQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDD-VLWYCEDCEPKVAKPS 59 (549)
Q Consensus 5 C~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~-~~WyCp~C~s~~~~~~ 59 (549)
|+.||....+-.--+|..|- ...| ++..+|+. ..-+|+.|-...-++.
T Consensus 1 C~~CG~~~~~~~~~lC~~C~-~~~~------~i~ei~~~i~v~~C~~Cg~~~~~~~ 49 (236)
T PF04981_consen 1 CPRCGREIEPLIDGLCPDCY-LKRF------DIIEIPDRIEVTICPKCGRYRIGGR 49 (236)
T ss_pred CCCCCCCCCCcccccChHHh-cccC------CeeecCCccCceECCCCCCEECCCE
Confidence 99999977777678999995 3333 23446653 4789999998775543
No 58
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=24.67 E-value=55 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=16.9
Q ss_pred eeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 18 IGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 18 LlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
++|--|+...--...-+-.|..|| -|||.|+.+
T Consensus 5 i~CP~CgnKTR~kir~DT~LkNfP----lyCpKCK~E 37 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTVLKNFP----LYCPKCKQE 37 (55)
T ss_pred EECCCCCCccceeeecCceecccc----ccCCCCCce
Confidence 445555433223344444455555 577777754
No 59
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.60 E-value=43 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=12.1
Q ss_pred CCcccccccCcCCccceeeccCCC
Q 008897 1 MVTVCQQCGDKGFYEALIGCEKCQ 24 (549)
Q Consensus 1 mvtvC~iCGd~GfeDkLLlCD~Cd 24 (549)
|-..|.-||. ..++--.+|..|.
T Consensus 1 m~~~Cp~Cg~-~~~~~~~fC~~CG 23 (26)
T PF13248_consen 1 MEMFCPNCGA-EIDPDAKFCPNCG 23 (26)
T ss_pred CcCCCcccCC-cCCcccccChhhC
Confidence 4455666666 3333355555554
No 60
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=23.15 E-value=47 Score=38.53 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=34.6
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
.+|..|..+|-=.++.-|+.|...-.=.-|-----.-+|. .+..|++|+.+.
T Consensus 54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~-~~~lc~~c~~~~ 105 (715)
T COG1107 54 IPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPW-EEGLCPECRRKP 105 (715)
T ss_pred CCCCeeccceeEEEEeecccCCCceeEEeeccccceecCc-ccccChhHhhCC
Confidence 5899999999999999999998544444444321112332 244799998644
No 61
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=23.09 E-value=14 Score=45.08 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=38.4
Q ss_pred cccccccCcCCccceeeccC-CCCCCccc-ccCC--CCCCCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYEALIGCEK-CQTTAVHI-YCLP--VLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~-Cd~~A~Ht-YCL~--~~l~~VPe~~~WyCp~C~s~~ 55 (549)
..|-||| -.+.++.|+. |- .++|+ -|++ +.-..+++ +.|+|++|..+.
T Consensus 429 rrl~Ie~---~det~l~yysT~p-qly~ll~cLd~~~~e~~L~d-~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 429 RRLRIEG---MDETLLWYYSTCP-QLYHLLRCLDRTYVEMYLCD-GIWERREEIIRQ 480 (1414)
T ss_pred eeeEEec---CCCcEEEEecCcH-HHHHHHHHhchHHHHHhhcc-chhhhHHHHHHh
Confidence 4577887 6678999999 97 68999 9999 54456886 699999997554
No 62
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.25 E-value=41 Score=30.18 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=31.5
Q ss_pred cccccccCcCCccceeec------cCCCCCCcccccCCC-------CCCCCCCCCcccccCCCc
Q 008897 3 TVCQQCGDKGFYEALIGC------EKCQTTAVHIYCLPV-------LPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlC------D~Cd~~A~HtYCL~~-------~l~~VPe~~~WyCp~C~s 53 (549)
+.|+.|..+....+ ..| ..|. ...=.||-+- .+.++-++..|.||-|+.
T Consensus 8 ~~CHqCrqKt~~~~-~~C~~~~~~~~C~-~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFK-TICTGHWKNSSCR-GCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCc-eEcCCCCCCCCCc-cCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 56999998877554 678 8883 2334576552 112233346899999986
No 63
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=21.87 E-value=64 Score=23.23 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=6.0
Q ss_pred CCcccccccC
Q 008897 1 MVTVCQQCGD 10 (549)
Q Consensus 1 mvtvC~iCGd 10 (549)
|.+.|+-||.
T Consensus 1 M~~~CP~C~~ 10 (38)
T TIGR02098 1 MRIQCPNCKT 10 (38)
T ss_pred CEEECCCCCC
Confidence 5556666665
No 64
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.11 E-value=1.3e+02 Score=37.75 Aligned_cols=20 Identities=30% Similarity=0.843 Sum_probs=15.8
Q ss_pred cccccccCcCCccceeeccCCCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQT 25 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~ 25 (549)
..|+-||...+. .+|..|+.
T Consensus 668 rkCPkCG~~t~~---~fCP~CGs 687 (1337)
T PRK14714 668 RRCPSCGTETYE---NRCPDCGT 687 (1337)
T ss_pred EECCCCCCcccc---ccCcccCC
Confidence 579999987665 39999984
No 65
>COG1462 CsgG Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]
Probab=20.90 E-value=90 Score=32.53 Aligned_cols=63 Identities=16% Similarity=0.048 Sum_probs=45.9
Q ss_pred cCCCCCChHHHHHHHHHHHhccceeeEeecceeEEeeecCCCCccccccccc-eeEEEeeeecccC
Q 008897 431 FPNNERSEKVYDSLVHDMISHDVALRAVVKNAALLLFTSNLLPFQFWRFQSK-FYLWGVFRAKQAS 495 (549)
Q Consensus 431 FPd~ER~ek~yD~LVe~MI~~DLALRavI~~AELLIFPS~lLP~~~QrfngK-~YLWGVFR~rK~s 495 (549)
|-..|| ..+..|.++--..|.+++..+-+|+.+|+=|..==+--++=.|- .+|||++.+++..
T Consensus 88 F~VleR--e~l~~l~~E~~i~g~~~~~~l~GAdy~V~G~IT~~e~~~ks~G~g~~l~G~~~r~~~q 151 (252)
T COG1462 88 FNVLER--ENLEELLNEAEISGAAQKQQLKGADYVVTGSITQYEFGAKSGGGGAQLFGIGARGKKQ 151 (252)
T ss_pred eEEEeh--hhHHHHHHHHHhhcccccccccCCcEEEEcceeeeeccccccCCCccceeeecccccc
Confidence 333444 46788999988899999999999999999887522222222222 6999999999864
No 66
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=20.03 E-value=87 Score=32.13 Aligned_cols=13 Identities=31% Similarity=1.020 Sum_probs=10.6
Q ss_pred CCcccccCCCcCc
Q 008897 43 DVLWYCEDCEPKV 55 (549)
Q Consensus 43 ~~~WyCp~C~s~~ 55 (549)
-+.|||+.|....
T Consensus 257 kgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 257 KGKWYCPRCKAEN 269 (274)
T ss_pred CCcccchhhhhhh
Confidence 4689999998754
Done!