Query 008897
Match_columns 549
No_of_seqs 161 out of 175
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 14:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f62_A Transcription factor WS 99.3 2.1E-12 7.3E-17 97.0 3.2 50 3-54 1-50 (51)
2 3shb_A E3 ubiquitin-protein li 99.2 1.1E-11 3.8E-16 102.3 4.2 50 4-54 28-77 (77)
3 2e6s_A E3 ubiquitin-protein li 99.2 1.5E-11 5.1E-16 101.3 4.6 50 4-54 28-77 (77)
4 3asl_A E3 ubiquitin-protein li 99.1 2.2E-11 7.4E-16 98.4 4.5 50 4-54 20-69 (70)
5 2e6r_A Jumonji/ARID domain-con 99.1 1.8E-11 6.1E-16 103.3 2.6 52 2-55 16-67 (92)
6 2lri_C Autoimmune regulator; Z 99.1 2.9E-11 1E-15 97.0 3.5 48 3-55 13-60 (66)
7 1mm2_A MI2-beta; PHD, zinc fin 99.1 6.4E-11 2.2E-15 93.0 5.1 51 2-57 9-59 (61)
8 1wev_A Riken cDNA 1110020M19; 99.1 5.1E-11 1.7E-15 99.7 3.3 53 2-56 16-74 (88)
9 1xwh_A Autoimmune regulator; P 99.0 1E-10 3.6E-15 92.8 2.6 52 2-58 8-59 (66)
10 1fp0_A KAP-1 corepressor; PHD 99.0 2.2E-10 7.4E-15 97.3 4.7 50 2-56 25-74 (88)
11 2ku3_A Bromodomain-containing 99.0 3.8E-11 1.3E-15 97.5 0.1 52 2-57 16-69 (71)
12 2yt5_A Metal-response element- 99.0 6.9E-11 2.4E-15 92.6 1.4 53 2-56 6-63 (66)
13 2yql_A PHD finger protein 21A; 99.0 1.3E-10 4.3E-15 89.5 2.5 48 2-54 9-56 (56)
14 2ysm_A Myeloid/lymphoid or mix 99.0 1.5E-10 5.2E-15 98.7 3.3 54 4-59 56-109 (111)
15 2l43_A N-teminal domain from h 98.9 1.4E-10 4.9E-15 97.2 1.3 52 2-57 25-78 (88)
16 3v43_A Histone acetyltransfera 98.9 4.8E-10 1.6E-14 96.6 4.3 49 4-54 63-112 (112)
17 2l5u_A Chromodomain-helicase-D 98.9 3.6E-10 1.2E-14 88.7 2.6 48 2-54 11-58 (61)
18 2puy_A PHD finger protein 21A; 98.9 3.9E-10 1.3E-14 87.7 2.6 49 2-55 5-53 (60)
19 2kwj_A Zinc finger protein DPF 98.9 4.3E-10 1.5E-14 97.3 2.8 50 4-55 60-109 (114)
20 3o36_A Transcription intermedi 98.9 1.1E-09 3.8E-14 100.3 4.5 49 2-55 4-52 (184)
21 3u5n_A E3 ubiquitin-protein li 98.8 1.2E-09 4E-14 102.2 4.0 49 2-55 7-55 (207)
22 2ro1_A Transcription intermedi 98.8 2.4E-09 8.1E-14 99.8 4.6 49 3-56 3-51 (189)
23 2k16_A Transcription initiatio 98.7 2.3E-09 7.8E-14 86.1 1.7 53 3-57 19-71 (75)
24 2lv9_A Histone-lysine N-methyl 98.7 1E-08 3.5E-13 87.1 4.5 49 2-54 28-76 (98)
25 2ysm_A Myeloid/lymphoid or mix 98.4 1.9E-07 6.5E-12 79.6 4.5 50 2-53 7-56 (111)
26 4gne_A Histone-lysine N-methyl 98.3 3.4E-07 1.2E-11 79.8 3.1 49 2-57 15-65 (107)
27 1wen_A Inhibitor of growth fam 98.1 3.2E-06 1.1E-10 68.5 5.2 50 3-57 17-68 (71)
28 2vnf_A ING 4, P29ING4, inhibit 98.1 8.7E-07 3E-11 69.5 1.2 47 3-54 11-59 (60)
29 1weu_A Inhibitor of growth fam 98.0 5.2E-06 1.8E-10 70.7 4.9 51 3-58 37-89 (91)
30 3c6w_A P28ING5, inhibitor of g 97.9 3.3E-06 1.1E-10 66.2 1.2 47 3-54 10-58 (59)
31 2jmi_A Protein YNG1, ING1 homo 97.8 1.1E-05 3.7E-10 68.6 3.2 46 3-53 27-75 (90)
32 1we9_A PHD finger family prote 97.7 1.7E-05 5.9E-10 61.7 2.9 56 2-58 6-62 (64)
33 2g6q_A Inhibitor of growth pro 97.7 1E-05 3.5E-10 64.1 1.3 47 3-54 12-60 (62)
34 3v43_A Histone acetyltransfera 97.6 6.8E-06 2.3E-10 70.7 -0.9 52 2-55 5-65 (112)
35 3o70_A PHD finger protein 13; 97.6 3.2E-05 1.1E-09 62.1 2.8 47 3-53 20-66 (68)
36 2kwj_A Zinc finger protein DPF 97.4 2.7E-05 9.1E-10 67.3 0.4 50 3-54 2-61 (114)
37 2lbm_A Transcriptional regulat 97.3 4.1E-05 1.4E-09 69.9 0.2 46 3-53 64-116 (142)
38 1wew_A DNA-binding family prot 97.2 0.0001 3.5E-09 60.1 1.8 52 3-58 17-76 (78)
39 1x4i_A Inhibitor of growth pro 97.2 9.5E-05 3.2E-09 59.8 1.6 45 6-54 9-55 (70)
40 1wee_A PHD finger family prote 97.2 0.00013 4.3E-09 58.5 1.9 49 3-55 17-67 (72)
41 2ri7_A Nucleosome-remodeling f 97.1 4E-05 1.4E-09 69.2 -2.0 52 2-55 8-60 (174)
42 1wep_A PHF8; structural genomi 97.1 0.00015 5.1E-09 59.0 1.5 51 4-55 13-64 (79)
43 3o7a_A PHD finger protein 13 v 97.0 0.00025 8.4E-09 53.8 2.1 48 3-53 4-51 (52)
44 2rsd_A E3 SUMO-protein ligase 97.0 0.00017 5.9E-09 57.3 0.9 47 6-55 13-66 (68)
45 1wem_A Death associated transc 96.9 7.9E-05 2.7E-09 60.0 -1.4 53 3-57 17-73 (76)
46 3ql9_A Transcriptional regulat 96.8 0.0001 3.4E-09 66.5 -1.9 48 2-54 57-111 (129)
47 3kqi_A GRC5, PHD finger protei 96.8 0.00016 5.3E-09 58.5 -0.8 53 3-56 10-63 (75)
48 2xb1_A Pygopus homolog 2, B-ce 96.6 9.2E-05 3.1E-09 63.8 -3.3 55 2-58 3-65 (105)
49 2kgg_A Histone demethylase jar 96.3 0.00074 2.5E-08 51.2 0.6 48 3-52 3-52 (52)
50 4bbq_A Lysine-specific demethy 95.8 0.0041 1.4E-07 52.9 2.7 44 11-55 69-115 (117)
51 2vpb_A Hpygo1, pygopus homolog 95.8 0.00078 2.7E-08 53.8 -1.8 49 2-52 8-64 (65)
52 3lqh_A Histone-lysine N-methyl 95.7 0.0023 7.9E-08 60.1 0.7 52 3-55 3-64 (183)
53 1wil_A KIAA1045 protein; ring 94.6 0.0075 2.6E-07 51.7 0.6 49 2-53 15-75 (89)
54 3pur_A Lysine-specific demethy 94.5 0.01 3.5E-07 63.9 1.4 52 3-55 13-95 (528)
55 3kv5_D JMJC domain-containing 94.4 0.0035 1.2E-07 66.3 -2.3 51 4-55 38-89 (488)
56 3kv4_A PHD finger protein 8; e 94.3 0.0025 8.7E-08 67.0 -3.5 53 2-55 4-57 (447)
57 2ku7_A MLL1 PHD3-CYP33 RRM chi 87.9 0.27 9.1E-06 41.0 2.6 38 17-55 2-45 (140)
58 4gne_A Histone-lysine N-methyl 81.2 1.1 3.7E-05 39.1 3.4 46 4-57 60-105 (107)
59 4bbq_A Lysine-specific demethy 74.2 0.53 1.8E-05 39.9 -0.5 38 3-56 8-45 (117)
60 2ct0_A Non-SMC element 1 homol 71.2 1.9 6.6E-05 35.1 2.2 49 2-56 15-63 (74)
61 1weq_A PHD finger protein 7; s 69.6 5.2 0.00018 33.9 4.5 36 14-53 43-78 (85)
62 1weo_A Cellulose synthase, cat 62.1 3 0.0001 36.1 1.7 52 2-58 16-71 (93)
63 3nw0_A Non-structural maintena 61.2 2.4 8.1E-05 40.9 1.0 48 2-55 180-227 (238)
64 1e8j_A Rubredoxin; iron-sulfur 57.1 13 0.00046 28.5 4.4 23 31-55 24-46 (52)
65 1kbe_A Kinase suppressor of RA 55.7 6.9 0.00024 29.7 2.5 31 2-35 14-44 (49)
66 1vyx_A ORF K3, K3RING; zinc-bi 55.4 0.9 3.1E-05 35.2 -2.5 48 2-54 6-56 (60)
67 2kn9_A Rubredoxin; metalloprot 52.9 7 0.00024 32.9 2.3 38 15-55 25-70 (81)
68 2yuu_A NPKC-delta, protein kin 50.5 20 0.00068 29.0 4.6 33 2-35 28-62 (83)
69 1dx8_A Rubredoxin; electron tr 49.3 8.2 0.00028 31.4 2.2 21 33-55 30-50 (70)
70 6rxn_A Rubredoxin; electron tr 48.3 5.3 0.00018 30.3 0.8 16 37-54 24-39 (46)
71 1s24_A Rubredoxin 2; electron 47.6 7.1 0.00024 33.3 1.6 19 34-54 59-77 (87)
72 1faq_A RAF-1; transferase, ser 44.9 13 0.00046 27.1 2.6 31 2-35 14-44 (52)
73 2v3b_B Rubredoxin 2, rubredoxi 43.0 9.9 0.00034 29.6 1.6 22 32-55 25-46 (55)
74 1v5n_A PDI-like hypothetical p 41.8 9.2 0.00031 31.8 1.4 32 4-37 49-80 (89)
75 1yk4_A Rubredoxin, RD; electro 41.5 11 0.00037 29.0 1.6 20 33-54 25-44 (52)
76 3rsn_A SET1/ASH2 histone methy 40.7 19 0.00066 34.0 3.5 46 7-53 9-58 (177)
77 4rxn_A Rubredoxin; electron tr 38.1 16 0.00054 28.6 2.1 17 36-54 29-45 (54)
78 2enz_A NPKC-theta, protein kin 37.6 22 0.00076 27.4 2.9 33 2-35 23-57 (65)
79 3uej_A NPKC-delta, protein kin 36.4 14 0.00047 28.5 1.5 33 2-35 20-54 (65)
80 2ect_A Ring finger protein 126 36.1 28 0.00094 26.6 3.2 57 2-64 15-71 (78)
81 1pft_A TFIIB, PFTFIIBN; N-term 35.5 26 0.0009 25.7 2.9 22 3-24 6-31 (50)
82 2k0a_A PRE-mRNA-splicing facto 32.3 17 0.00058 32.3 1.6 62 4-67 31-97 (109)
83 2d8s_A Cellular modulator of i 31.8 31 0.0011 27.9 2.9 52 3-57 16-70 (80)
84 3a1b_A DNA (cytosine-5)-methyl 30.5 11 0.00038 35.1 0.1 49 3-55 80-135 (159)
85 2jrp_A Putative cytoplasmic pr 30.3 22 0.00077 29.9 1.9 40 1-55 1-41 (81)
86 2jw6_A Deformed epidermal auto 30.1 23 0.0008 25.8 1.8 26 2-34 9-34 (52)
87 2dj8_A Protein CBFA2T1; zinc f 29.8 27 0.00094 26.6 2.2 25 3-34 16-40 (60)
88 2lk0_A RNA-binding protein 5; 29.2 16 0.00055 25.4 0.7 13 43-55 3-15 (32)
89 2eli_A Protein kinase C alpha 29.0 41 0.0014 27.3 3.3 33 2-35 28-62 (85)
90 2od1_A Protein CBFA2T1; zinc f 28.9 29 0.00099 26.5 2.2 26 2-34 13-38 (60)
91 2ep4_A Ring finger protein 24; 28.5 10 0.00035 28.8 -0.4 58 2-65 15-72 (74)
92 2pv0_B DNA (cytosine-5)-methyl 28.4 5.8 0.0002 41.4 -2.4 49 3-55 94-149 (386)
93 2enn_A NPKC-theta, protein kin 28.2 34 0.0012 27.3 2.6 33 2-35 34-68 (77)
94 2jne_A Hypothetical protein YF 26.9 20 0.00067 31.5 1.0 40 1-55 31-71 (101)
95 2odd_A Protein CBFA2T1; MYND z 26.5 31 0.0011 26.4 2.0 25 3-34 18-42 (64)
96 2fnf_X Putative RAS effector N 23.8 37 0.0013 27.1 2.0 32 2-35 35-66 (72)
97 1ptq_A Protein kinase C delta 23.3 34 0.0012 24.6 1.6 33 2-35 11-45 (50)
98 2k1p_A Zinc finger RAN-binding 22.5 36 0.0012 23.8 1.5 13 43-55 4-16 (33)
99 3l11_A E3 ubiquitin-protein li 21.1 32 0.0011 28.3 1.2 45 3-55 16-60 (115)
100 2egp_A Tripartite motif-contai 20.8 64 0.0022 24.3 2.8 51 3-57 13-65 (79)
101 1iym_A EL5; ring-H2 finger, ub 20.3 48 0.0016 23.4 1.9 47 2-54 5-52 (55)
No 1
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.25 E-value=2.1e-12 Score=97.05 Aligned_cols=50 Identities=34% Similarity=0.822 Sum_probs=45.9
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
+.|.+||+.++++.|++||.|+ .+||+||+++++..+|+ ++|||+.|...
T Consensus 1 a~C~vC~~~~~~~~ll~Cd~C~-~~~H~~Cl~p~l~~~P~-g~W~C~~C~~~ 50 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCDECN-KAFHLFCLRPALYEVPD-GEWQCPACQPA 50 (51)
T ss_dssp CCCTTTCCSSCCSCCEECTTTC-CEECHHHHCTTCCSCCS-SCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCCEEECCCCC-hhhCcccCCCCcCCCCC-CcEECcCcccc
Confidence 4799999999999999999998 69999999999999997 59999999763
No 2
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=102.27 Aligned_cols=50 Identities=32% Similarity=0.846 Sum_probs=44.5
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
.|.+||..++++.|++||.|+ .+||+||++|+|..+|++..|||+.|+++
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~-~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCcceeEeCCCC-CccCcccCCCcccCCCCCCceECcCcccc
Confidence 699999999999999999998 69999999999999998633999999863
No 3
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=101.30 Aligned_cols=50 Identities=32% Similarity=0.834 Sum_probs=45.4
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
.|.+||..++++.|++||.|+ .+||+||++|++..+|++.+|||+.|..+
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECN-VAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSC-CEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCcCcCCcCCCCCEEEcCCCC-ccccccccCCCccCCCCCCCcCCcCccCc
Confidence 689999999999999999998 69999999999999997449999999753
No 4
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.15 E-value=2.2e-11 Score=98.40 Aligned_cols=50 Identities=32% Similarity=0.846 Sum_probs=45.3
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
.|.+||..++++.|++||.|+ ++||+||++|++..+|++.+|||+.|..+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCC-CceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 578999999999999999998 79999999999999997449999999864
No 5
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.8e-11 Score=103.30 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=47.3
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
...|.+|++.++++.|++||.|+ .+||+||++|++..+|. ++|||+.|....
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~-~~~H~~Cl~Ppl~~~P~-g~W~C~~C~~~~ 67 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCD-DNYHIFCLLPPLPEIPR-GIWRCPKCILAE 67 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTC-CEECSSSSSSCCSSCCS-SCCCCHHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCC-chhccccCCCCcccCCC-CCcCCccCcCcc
Confidence 45799999999999999999998 69999999999999997 599999998653
No 6
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.11 E-value=2.9e-11 Score=96.99 Aligned_cols=48 Identities=27% Similarity=0.558 Sum_probs=42.2
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
..|.+||+.| .|++||.|+ ++||+||+++++..+|+ +.|||+.|....
T Consensus 13 ~~C~vC~~~~---~ll~Cd~C~-~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGDGT---DVLRCTHCA-AAFHWRCHFPAGTSRPG-TGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSCCT---TCEECSSSC-CEECHHHHCTTTCCCCS-SSCCCTTTTTCC
T ss_pred CCcCCCCCCC---eEEECCCCC-CceecccCCCccCcCCC-CCEECccccCCC
Confidence 5699999865 499999998 79999999999999997 599999998654
No 7
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.10 E-value=6.4e-11 Score=93.01 Aligned_cols=51 Identities=29% Similarity=0.741 Sum_probs=44.1
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
...|.+|++.| .|++||.|+ ++||+||+++++..+|+ ++|||+.|......
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~-~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 9 MEFCRVCKDGG---ELLCCDTCP-SSYHIHCLNPPLPEIPN-GEWLCPRCTCPALK 59 (61)
T ss_dssp CSSCTTTCCCS---SCBCCSSSC-CCBCSSSSSSCCSSCCS-SCCCCTTTTTTCCT
T ss_pred CCcCCCCCCCC---CEEEcCCCC-HHHcccccCCCcCcCCC-CccCChhhcCchhc
Confidence 45799999854 699999998 68999999999999997 59999999876544
No 8
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.06 E-value=5.1e-11 Score=99.66 Aligned_cols=53 Identities=21% Similarity=0.580 Sum_probs=45.2
Q ss_pred CcccccccCcCC--ccceeeccCCCCCCcccccCCCCCCC----CCCCCcccccCCCcCcC
Q 008897 2 VTVCQQCGDKGF--YEALIGCEKCQTTAVHIYCLPVLPAS----FEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 2 vtvC~iCGd~Gf--eDkLLlCD~Cd~~A~HtYCL~~~l~~----VPe~~~WyCp~C~s~~~ 56 (549)
..+|.+|++... .+.|++||.|+ .+||+||++|++.. +|+ +.|||+.|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~~~~~p~-g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECH-NLYHQDCHKPQVTDKEVNDPR-LVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSC-CEEETTTSSSCCCHHHHHCTT-CCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCC-CeEcCccCCCcccccccCCCC-CCeeCccccchhh
Confidence 468999999876 47899999998 79999999999874 886 5999999986543
No 9
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.00 E-value=1e-10 Score=92.76 Aligned_cols=52 Identities=29% Similarity=0.675 Sum_probs=44.8
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~ 58 (549)
...|.+|++.| .|++||.|+ .+||++|+++++..+|. +.|||+.|.......
T Consensus 8 ~~~C~vC~~~g---~ll~CD~C~-~~fH~~Cl~ppl~~~P~-g~W~C~~C~~~~~~~ 59 (66)
T 1xwh_A 8 EDECAVCRDGG---ELICCDGCP-RAFHLACLSPPLREIPS-GTWRCSSCLQATVQE 59 (66)
T ss_dssp CCSBSSSSCCS---SCEECSSCC-CEECTTTSSSCCSSCCS-SCCCCHHHHHTCCCC
T ss_pred CCCCccCCCCC---CEEEcCCCC-hhhcccccCCCcCcCCC-CCeECccccCccccc
Confidence 46899999875 599999998 69999999999999997 699999998765443
No 10
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.00 E-value=2.2e-10 Score=97.29 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=44.0
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
...|.+||+.| .|++||.|+ ++||+||++|++..+|+ ++|||+.|.....
T Consensus 25 ~~~C~vC~~~g---~LL~CD~C~-~~fH~~Cl~PpL~~~P~-g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 25 ATICRVCQKPG---DLVMCNQCE-FCFHLDCHLPALQDVPG-EEWSCSLCHVLPD 74 (88)
T ss_dssp SSCCSSSCSSS---CCEECTTSS-CEECTTSSSTTCCCCCS-SSCCCCSCCCCCS
T ss_pred CCcCcCcCCCC---CEEECCCCC-CceecccCCCCCCCCcC-CCcCCccccCCCc
Confidence 46799999886 499999998 79999999999999997 5999999987543
No 11
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.00 E-value=3.8e-11 Score=97.55 Aligned_cols=52 Identities=29% Similarity=0.607 Sum_probs=44.9
Q ss_pred CcccccccCcC--CccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 2 vtvC~iCGd~G--feDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
...|.+|++.+ .++.|++||+|+ .+||+||++++ .+|+ ++|||+.|...+++
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~-~~~H~~Cl~~~--~vP~-g~W~C~~C~~~~~~ 69 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCN-LAVHQECYGVP--YIPE-GQWLCRHCLQSRAR 69 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSC-CEEEHHHHTCS--SCCS-SCCCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCC-CccccccCCCC--cCCC-CCcCCccCcCcCcc
Confidence 46899999887 889999999998 69999999986 5897 59999999876543
No 12
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.00 E-value=6.9e-11 Score=92.65 Aligned_cols=53 Identities=25% Similarity=0.585 Sum_probs=44.5
Q ss_pred CcccccccCc--CCccceeeccCCCCCCcccccCCCCCCC--C-CCCCcccccCCCcCcC
Q 008897 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPVLPAS--F-EDDVLWYCEDCEPKVA 56 (549)
Q Consensus 2 vtvC~iCGd~--GfeDkLLlCD~Cd~~A~HtYCL~~~l~~--V-Pe~~~WyCp~C~s~~~ 56 (549)
...|.+||+. ..++.|++||.|+ .+||+||+++++.. + |+ +.|||+.|.....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~-~~~H~~C~~p~l~~~~~~p~-~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCG-QGYHQLCHTPHIDSSVIDSD-EKWLCRQCVFATT 63 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSC-CEEETTTSSSCCCHHHHHSS-CCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCC-hHHHhhhCCCcccccccCCC-CCEECCCCcCccc
Confidence 4689999987 4569999999998 69999999998776 4 65 6999999987553
No 13
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=89.52 Aligned_cols=48 Identities=25% Similarity=0.751 Sum_probs=42.4
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
...|.+|++.| .|++||.|+ .+||++|+++++..+|. +.|||+.|..+
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~-~~~H~~Cl~ppl~~~p~-g~W~C~~C~~q 56 (56)
T 2yql_A 9 EDFCSVCRKSG---QLLMCDTCS-RVYHLDCLDPPLKTIPK-GMWICPRCQDQ 56 (56)
T ss_dssp CCSCSSSCCSS---CCEECSSSS-CEECSSSSSSCCCSCCC-SSCCCHHHHCC
T ss_pred CCCCccCCCCC---eEEEcCCCC-cceECccCCCCcCCCCC-CceEChhhhCc
Confidence 46799999864 699999998 79999999999999997 59999999753
No 14
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-10 Score=98.67 Aligned_cols=54 Identities=30% Similarity=0.756 Sum_probs=49.4
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCC
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~ 59 (549)
.|.+||..++++.|++||.|+ .+||+||+++++..+|+ +.|||+.|.....+++
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~-~~yH~~Cl~ppl~~~P~-g~W~C~~C~~c~~g~s 109 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCD-KGYHTFCLQPVMKSVPT-NGWKCKNCRICISGPS 109 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSC-CEEEGGGSSSCCSSCCS-SCCCCHHHHCCSCSCC
T ss_pred cccccCccCCCCCeeECCCCC-cHHhHHhcCCccccCCC-CCcCCcCCcCcCCCCC
Confidence 689999999999999999998 68999999999999997 5999999998776665
No 15
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.94 E-value=1.4e-10 Score=97.21 Aligned_cols=52 Identities=29% Similarity=0.607 Sum_probs=44.8
Q ss_pred CcccccccCcC--CccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 2 vtvC~iCGd~G--feDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
...|.+||+.+ .++.|++||.|+ .+||+||++++ .+|+ +.|||+.|......
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~-~~fH~~Cl~p~--~vP~-g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCN-LAVHQECYGVP--YIPE-GQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSC-CCCCHHHHTCS--SCCS-SCCCCHHHHHHTTS
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCC-chhhcccCCCC--ccCC-CceECccccCccch
Confidence 46899999987 888999999998 68999999986 4897 69999999876533
No 16
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.93 E-value=4.8e-10 Score=96.59 Aligned_cols=49 Identities=24% Similarity=0.806 Sum_probs=43.5
Q ss_pred ccccccCcC-CccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 4 VCQQCGDKG-FYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 4 vC~iCGd~G-feDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
+|.+||+.+ +++.|++||.|+ .+||+||++|++..+|++ +|||+.|+.+
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~-~~yH~~Cl~p~l~~~P~~-~W~C~~C~~k 112 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCD-RGFHMECCDPPLTRMPKG-MWICQICRPR 112 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTC-CEECGGGCSSCCSSCCSS-CCCCTTTSCC
T ss_pred ccccccCcCCCccceEEcCCCC-CeeecccCCCCCCCCCCC-CeECCCCCCc
Confidence 699999875 567899999998 799999999999999974 9999999863
No 17
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=3.6e-10 Score=88.73 Aligned_cols=48 Identities=27% Similarity=0.665 Sum_probs=42.0
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
...|.+|++. ..|++||.|+ ++||+||+++++..+|+ +.|||+.|..+
T Consensus 11 ~~~C~vC~~~---g~ll~CD~C~-~~fH~~Cl~p~l~~~p~-g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---GEIILCDTCP-RAYHMVCLDPDMEKAPE-GKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---SSEEECSSSS-CEEEHHHHCTTCCSCCC-SSCCCTTGGGG
T ss_pred CCCCccCCCC---CcEEECCCCC-hhhhhhccCCCCCCCCC-CceECcccccc
Confidence 4679999985 4799999998 69999999999999997 59999999764
No 18
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.91 E-value=3.9e-10 Score=87.71 Aligned_cols=49 Identities=24% Similarity=0.747 Sum_probs=43.1
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
...|.+||+.| .|++||.|+ .+||++|+++++..+|. +.|||+.|....
T Consensus 5 ~~~C~vC~~~g---~ll~Cd~C~-~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKSG---QLLMCDTCS-RVYHLDCLDPPLKTIPK-GMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCCS---SCEECSSSS-CEECGGGSSSCCSSCCC-SCCCCHHHHHHH
T ss_pred CCCCcCCCCCC---cEEEcCCCC-cCEECCcCCCCcCCCCC-CceEChhccChh
Confidence 46899999864 699999998 79999999999999997 599999997654
No 19
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.90 E-value=4.3e-10 Score=97.31 Aligned_cols=50 Identities=28% Similarity=0.641 Sum_probs=45.6
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
.|.+||..++++.|++||.|+ ++||+||++|++..+|+ ++|||+.|....
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~-~~yH~~Cl~ppl~~~P~-g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCD-RGYHMYCLNPPVAEPPE-GSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSC-CEEETTTSSSCCSSCCS-SCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCC-ccccccccCCCccCCCC-CCeECccccchh
Confidence 699999999999999999998 79999999999999997 599999997543
No 20
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.87 E-value=1.1e-09 Score=100.31 Aligned_cols=49 Identities=29% Similarity=0.643 Sum_probs=43.5
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
...|.+||+.|. |++||.|+ .+||+||++|++..+|+ ++|+|+.|+...
T Consensus 4 ~~~C~~C~~~g~---ll~Cd~C~-~~~H~~C~~p~l~~~p~-~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGE---LLCCEKCP-KVFHLSCHVPTLTNFPS-GEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSS---CEECSSSS-CEECTTTSSSCCSSCCS-SCCCCTTTSCSS
T ss_pred CCccccCCCCCe---eeecCCCC-cccCccccCCCCCCCCC-CCEECccccCcc
Confidence 457999998865 99999998 79999999999999997 589999999765
No 21
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.85 E-value=1.2e-09 Score=102.18 Aligned_cols=49 Identities=31% Similarity=0.612 Sum_probs=43.4
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
...|.+||+.|. |++||.|+ ++||+||++|++..+|+ +.|||+.|....
T Consensus 7 ~~~C~~C~~~g~---ll~Cd~C~-~~~H~~Cl~p~l~~~p~-~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGGD---LLCCEKCP-KVFHLTCHVPTLLSFPS-GDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCEE---EEECSSSS-CEECTTTSSSCCSSCCS-SCCCCTTTSCSS
T ss_pred CCCCCCCCCCCc---eEEcCCCC-CccCCccCCCCCCCCCC-CCEEeCceeCcc
Confidence 457999998874 99999998 79999999999999997 599999999754
No 22
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.81 E-value=2.4e-09 Score=99.81 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=43.4
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
..|.+||+.|. |++||.|+ ++||+||+.|++..+|. ++|+|+.|.....
T Consensus 3 ~~C~~C~~~g~---ll~Cd~C~-~~~H~~Cl~p~l~~~p~-g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 3 TICRVCQKPGD---LVMCNQCE-FCFHLDCHLPALQDVPG-EEWSCSLCHVLPD 51 (189)
T ss_dssp CCBTTTCCCSS---CCCCTTTC-CBCCSTTSTTCCSSCCC-TTCCTTTTSCSCC
T ss_pred CcCccCCCCCc---eeECCCCC-chhccccCCCCcccCCC-CCCCCcCccCCCC
Confidence 47999998874 99999998 79999999999999997 6999999997653
No 23
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.73 E-value=2.3e-09 Score=86.07 Aligned_cols=53 Identities=28% Similarity=0.782 Sum_probs=46.0
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
..|.+|+...+.+.+++||.|+ ..||++|+++++..+|. +.|||+.|.....+
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~-~wfH~~Cv~~~~~~~~~-~~w~C~~C~~~~~k 71 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCD-DWYHWPCVGIMAAPPEE-MQWFCPKCANKIKK 71 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSS-SEEEHHHHTCSSCCCSS-SCCCCTTTHHHHCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCC-cccccccCCCCccCCCC-CCEEChhccCchhh
Confidence 4699999999988999999998 79999999998877775 58999999876543
No 24
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.69 E-value=1e-08 Score=87.10 Aligned_cols=49 Identities=35% Similarity=0.737 Sum_probs=43.4
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
++.| +||..++...++.||.|+ ..||.+|+++++..+|+ .|||+.|+.+
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~-~w~H~~C~~~~~~~~p~--~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCS-VWQHIDCMGIDRQHIPD--TYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTC-BEEETTTTTCCTTSCCS--SBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCC-CcCcCcCCCCCccCCCC--CEECCCCcCC
Confidence 4566 899999999999999998 68999999999888986 6999999753
No 25
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.39 E-value=1.9e-07 Score=79.55 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=44.0
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
...|.+|++.|+.+.|+.|+.|. .+||.+|+++.+..+|. +.|+|++|..
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~-~~~H~~Cl~~~~~~~~~-~~W~C~~C~~ 56 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCG-QHYHGMCLDIAVTPLKR-AGWQCPECKV 56 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSC-CEECTTTTTCCCCTTTS-TTCCCTTTCC
T ss_pred CCCCcCCCCCCCCcCCeECCCCC-CCcChHHhCCccccccc-cCccCCcCCc
Confidence 46799999999988899999998 68999999998777775 5899999974
No 26
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.27 E-value=3.4e-07 Score=79.84 Aligned_cols=49 Identities=31% Similarity=0.620 Sum_probs=40.2
Q ss_pred CcccccccCcCCccceeecc--CCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 2 VTVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD--~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
...|.+|++.| .|++|| .|. .+||.+|++ +..+|+ +.|||++|.-..=+
T Consensus 15 ~~~C~~C~~~G---~ll~CD~~~Cp-~~fH~~Cl~--L~~~P~-g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 15 EDYCFQCGDGG---ELVMCDKKDCP-KAYHLLCLN--LTQPPY-GKWECPWHQCDECS 65 (107)
T ss_dssp CSSCTTTCCCS---EEEECCSTTCC-CEECTGGGT--CSSCCS-SCCCCGGGBCTTTC
T ss_pred CCCCCcCCCCC---cEeEECCCCCC-cccccccCc--CCcCCC-CCEECCCCCCCcCC
Confidence 46799999765 499999 898 599999999 578997 69999999755433
No 27
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.09 E-value=3.2e-06 Score=68.54 Aligned_cols=50 Identities=24% Similarity=0.758 Sum_probs=39.7
Q ss_pred cccccccCcCCccceeeccC--CCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~--Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
+.| +|+...+ ..++.||. |....||..|+++ ..+|. +.|||+.|...+.+
T Consensus 17 ~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl--~~~p~-g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 17 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGL--TTKPR-GKWFCPRCSQESGP 68 (71)
T ss_dssp CCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTTC--SSCCS-SCCCCTTTSSCSSS
T ss_pred CEE-ECCCCCC-CCEeEeeCCCCCCccEecccCCc--CcCCC-CCEECCCCCccccc
Confidence 456 8999876 45999999 7534799999996 57786 58999999876543
No 28
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.06 E-value=8.7e-07 Score=69.52 Aligned_cols=47 Identities=26% Similarity=0.814 Sum_probs=36.9
Q ss_pred cccccccCcCCccceeeccC--CCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~--Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
+.| +|++..+ ..++.||+ |....||.+|+++ ..+|. +.|||+.|...
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl--~~~p~-g~w~C~~C~~~ 59 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGL--TTKPR-GKWFCPRCSQE 59 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGTC--SSCCS-SCCCCHHHHC-
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCC--CcCCC-CCEECcCccCc
Confidence 345 9999876 56999999 5434799999995 57886 69999999764
No 29
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.00 E-value=5.2e-06 Score=70.73 Aligned_cols=51 Identities=24% Similarity=0.725 Sum_probs=40.0
Q ss_pred cccccccCcCCccceeeccC--CCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCC
Q 008897 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~--Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~ 58 (549)
+.| +|++..+. .++.||+ |....||..|+++ ...|. +.|||+.|...+.+.
T Consensus 37 ~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl--~~~p~-g~W~Cp~C~~~~~k~ 89 (91)
T 1weu_A 37 TYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGL--TTKPR-GKWFCPRCSQESGPS 89 (91)
T ss_dssp BCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTC--SSCCC-SSCCCTTTCCCCSSS
T ss_pred cEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCc--CcCCC-CCEECcCccCcCCcC
Confidence 456 99998774 5999999 6534799999996 46775 689999998766543
No 30
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.86 E-value=3.3e-06 Score=66.21 Aligned_cols=47 Identities=26% Similarity=0.786 Sum_probs=37.4
Q ss_pred cccccccCcCCccceeeccC--CCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~--Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
+.| +|++..+. .++.||+ |....||..|+++ ...|. +.|||+.|..+
T Consensus 10 ~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvgl--~~~p~-~~w~Cp~C~~~ 58 (59)
T 3c6w_A 10 TYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVDL--TTKPK-GKWFCPRCVQE 58 (59)
T ss_dssp EET-TTTEECCS-EEEECSCTTCSSCEEETGGGTC--SSCCS-SCCCCHHHHCC
T ss_pred cEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCCc--ccCCC-CCEECcCccCc
Confidence 445 99998764 5999999 6534899999996 57786 59999999764
No 31
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.78 E-value=1.1e-05 Score=68.64 Aligned_cols=46 Identities=20% Similarity=0.619 Sum_probs=36.4
Q ss_pred cccccccCcCCccceeeccCCC--CCCcccccCCCCCCCCCCCCcccccC-CCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQ--TTAVHIYCLPVLPASFEDDVLWYCED-CEP 53 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd--~~A~HtYCL~~~l~~VPe~~~WyCp~-C~s 53 (549)
+.| +|+...+.+ ++.||+|+ ...||..|+++ ..+|. +.|||+. |..
T Consensus 27 ~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVgl--~~~p~-~~W~Cp~cC~~ 75 (90)
T 2jmi_A 27 VYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVGL--KQAPK-GKWYCSKDCKE 75 (90)
T ss_dssp CCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSSC--SSCTT-SCCCSSHHHHH
T ss_pred cEE-EeCCCCCCC-EEEecCCCCccccCcCccCCC--CcCCC-CCccCChhhcc
Confidence 456 999877764 99999975 23799999997 46776 6999999 863
No 32
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.69 E-value=1.7e-05 Score=61.73 Aligned_cols=56 Identities=27% Similarity=0.521 Sum_probs=44.3
Q ss_pred CcccccccCcCC-ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCC
Q 008897 2 VTVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 2 vtvC~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~ 58 (549)
.+.|.+|+...+ .+..+.||.|+ .-||..|+++....+.....|+|+.|..+.++.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCE-MWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSC-CEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCccCCCCCEEEccCCC-CCCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 467999998864 46789999998 689999999865544333589999999877654
No 33
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.67 E-value=1e-05 Score=64.05 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=37.0
Q ss_pred cccccccCcCCccceeeccCCC--CCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQ--TTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd--~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
+.| +|++..+. .++.||+|+ ...||..|+++ ...|. +.|||+.|...
T Consensus 12 ~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl--~~~p~-~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSL--TYKPK-GKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEECCS-EEEECSCTTCSSCEEETGGGTC--SSCCS-SCCCCHHHHTC
T ss_pred cEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCc--CcCCC-CCEECcCcccC
Confidence 445 99997765 599999944 34899999997 46675 69999999764
No 34
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.59 E-value=6.8e-06 Score=70.73 Aligned_cols=52 Identities=27% Similarity=0.664 Sum_probs=40.8
Q ss_pred CcccccccCc------CCccceeeccCCCCCCcccccCCCCC---CCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDK------GFYEALIGCEKCQTTAVHIYCLPVLP---ASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~------GfeDkLLlCD~Cd~~A~HtYCL~~~l---~~VPe~~~WyCp~C~s~~ 55 (549)
..+|.+|.+. |.++.|+.|+.|. .++|.+|++..+ ..++. +.|+|++|+.-.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~-~~~H~~Cl~~~~~~~~~~~~-~~W~C~~C~~C~ 65 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCG-NSGHPSCLKFSPELTVRVKA-LRWQCIECKTCS 65 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTC-CEECHHHHTCCHHHHHHHHT-SCCCCTTTCCBT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcC-CCCCCchhcCCHHHHHHhhc-cccccccCCccc
Confidence 4679999776 6788999999998 689999998621 24565 589999997444
No 35
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.56 E-value=3.2e-05 Score=62.13 Aligned_cols=47 Identities=21% Similarity=0.643 Sum_probs=40.5
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
+.| +||...+.+.++.||.|+ .-||..|+++....+|+ .|||+.|..
T Consensus 20 ~~C-iC~~~~~~~~MIqCd~C~-~WfH~~Cvgi~~~~~~~--~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAGRPMIECNECH-TWIHLSCAKIRKSNVPE--VFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTTCCEEECTTTC-CEEETTTTTCCTTSCCS--SCCCHHHHT
T ss_pred eEe-ECCCcCCCCCEEECCCCC-ccccccccCcCcccCCC--cEECCCCCC
Confidence 457 999998888999999998 68999999997666774 799999975
No 36
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.40 E-value=2.7e-05 Score=67.34 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=39.4
Q ss_pred cccccccCcC-------CccceeeccCCCCCCcccccCCCCCC---CCCCCCcccccCCCcC
Q 008897 3 TVCQQCGDKG-------FYEALIGCEKCQTTAVHIYCLPVLPA---SFEDDVLWYCEDCEPK 54 (549)
Q Consensus 3 tvC~iCGd~G-------feDkLLlCD~Cd~~A~HtYCL~~~l~---~VPe~~~WyCp~C~s~ 54 (549)
..|.+|.+.+ .++.|+.|+.|. .+||.+|+++.+. .+|. +.|+|+.|+.-
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~-~~~H~~Cl~~~~~~~~~~~~-~~W~C~~C~~C 61 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCG-RSGHPTCLQFTLNMTEAVKT-YKWQCIECKSC 61 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSC-CEECTTTTTCCHHHHHHHHH-TTCCCGGGCCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCC-CccchhhCCChhhhhhccCC-CccCccccCcc
Confidence 5799997654 567999999998 6899999998532 4665 58999999643
No 37
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.28 E-value=4.1e-05 Score=69.88 Aligned_cols=46 Identities=33% Similarity=0.751 Sum_probs=38.8
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCC-----C--CCCCCcccccCCCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPA-----S--FEDDVLWYCEDCEP 53 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~-----~--VPe~~~WyCp~C~s 53 (549)
-.|.+||+.|. |+.||.|- ++||..|+++++. . .|+ +.|+|+-|..
T Consensus 64 d~C~vC~~GG~---LlcCD~Cp-r~Fh~~Cl~p~l~~~~l~~i~~p~-~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEGGN---LICCDFCH-NAFCKKCILRNLGRKELSTIMDEN-NQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCCSS---EEECSSSC-CEEEHHHHHHHTCHHHHHHHHTST-TCCCCTTTCC
T ss_pred CeecccCCCCc---EEeCCCCC-CeeeHhhcCCCCChhhhhhcccCC-CCCEeecccC
Confidence 46999999984 99999998 7999999998765 2 365 6999999975
No 38
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.21 E-value=0.0001 Score=60.05 Aligned_cols=52 Identities=25% Similarity=0.622 Sum_probs=41.3
Q ss_pred cccccccCcCCccceeecc--CCCCCCcccccCCCCCC------CCCCCCcccccCCCcCcCCC
Q 008897 3 TVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVLPA------SFEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD--~Cd~~A~HtYCL~~~l~------~VPe~~~WyCp~C~s~~~~~ 58 (549)
+.| +||.......++.|| .|+. -||.-|+++... .+| ..|||+.|+..+..+
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~-W~H~~CVgi~~~~~~~~~~~~--~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHV-WQHVGCVILPDKPMDGNPPLP--ESFYCEICRLTSGPS 76 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCC-EEEHHHHSCCCTTTCSCSCSC--SSCCCHHHHHCCSCC
T ss_pred EEe-ECCCcCCCCCEEEECCccCCc-cccCEEEccccccccccccCC--CCEECCCCCcccCCC
Confidence 456 899997777899999 9995 899999998543 234 379999999876544
No 39
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=9.5e-05 Score=59.80 Aligned_cols=45 Identities=20% Similarity=0.603 Sum_probs=36.1
Q ss_pred ccccCcCCccceeeccCCC--CCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 6 QQCGDKGFYEALIGCEKCQ--TTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 6 ~iCGd~GfeDkLLlCD~Cd--~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
++|+...+. .++.||.|+ ...||..|+++. ..|. +.|||+.|...
T Consensus 9 C~C~~~~~g-~MI~CD~cdC~~~WfH~~Cvgl~--~~p~-~~w~Cp~C~~~ 55 (70)
T 1x4i_A 9 CICNQVSYG-EMVGCDNQDCPIEWFHYGCVGLT--EAPK-GKWYCPQCTAA 55 (70)
T ss_dssp STTSCCCCS-SEECCSCTTCSCCCEEHHHHTCS--SCCS-SCCCCHHHHHH
T ss_pred EEcCCCCCC-CEeEeCCCCCCccCCcccccccC--cCCC-CCEECCCCCcc
Confidence 469988765 799999986 358999999974 5665 69999999754
No 40
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.16 E-value=0.00013 Score=58.50 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=38.5
Q ss_pred cccccccCcCCc-cceeeccCCCCCCcccccCCCCCC-CCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFY-EALIGCEKCQTTAVHIYCLPVLPA-SFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~Gfe-DkLLlCD~Cd~~A~HtYCL~~~l~-~VPe~~~WyCp~C~s~~ 55 (549)
+.| +||...+. +..+.||.|+ .-||..|+++... .+| ..|||+.|....
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~-~W~H~~Cvg~~~~~~~~--~~~~C~~C~~~~ 67 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCG-VWHHTRCIGINNADALP--SKFLCFRCIELS 67 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSC-EEEETTTTTCCTTSCCC--SCCCCHHHHHHC
T ss_pred eEe-eCCCccCCCCcEEECCCCC-CccCCeeeccCccccCC--CcEECCCccCCC
Confidence 467 79998654 5799999998 6899999998632 344 489999998754
No 41
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.08 E-value=4e-05 Score=69.23 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=39.6
Q ss_pred CcccccccCcCC-ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
.+.| +||..++ ...++.||.|+ .-||..|++.........+.|+|+.|....
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~-~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQ-NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTC-CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCC-chhChhhcCCchhhccCccCeecCCCcchh
Confidence 3568 9999865 56699999998 689999999753332223589999998754
No 42
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.07 E-value=0.00015 Score=59.00 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=39.1
Q ss_pred ccccccCcCC-ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 4 VCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 4 vC~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
+.++|+...+ ....+.||.|+ .-||..|+++..........|+|+.|....
T Consensus 13 ~~C~C~~~~d~~~~MIqCd~C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYCLCRQPYNVNHFMIECGLCQ-DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCSTTSCSCCSSSCEEEBTTTC-CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEEEcCCccCCCCceEEcCCCC-CcEEeeecCcccccccCCCeEECCCccccc
Confidence 3349999875 67889999998 689999999854433222489999998754
No 43
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.01 E-value=0.00025 Score=53.76 Aligned_cols=48 Identities=21% Similarity=0.545 Sum_probs=40.0
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
++=++||...+...++.||.|+ .-||.-|++.....+|+ .|+|+.|..
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~C~-~W~H~~Cvgi~~~~~~~--~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNECH-TWIHLSCAKIRKSNVPE--VFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTTTC-CEEETTTTTCCGGGCCS--SCCCHHHHT
T ss_pred CeEEEeCCcCCCCCEEEcCCCC-ccccccccCCCcccCCC--cEECcCCCC
Confidence 3446899988877999999998 68999999997666664 799999964
No 44
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.96 E-value=0.00017 Score=57.34 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=36.4
Q ss_pred ccccCcCCccceeecc--CCCCCCcccccCCCCCC-----CCCCCCcccccCCCcCc
Q 008897 6 QQCGDKGFYEALIGCE--KCQTTAVHIYCLPVLPA-----SFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 6 ~iCGd~GfeDkLLlCD--~Cd~~A~HtYCL~~~l~-----~VPe~~~WyCp~C~s~~ 55 (549)
++||.......++.|| .|+ .-||..|++.... .+|+ .|||+.|+..+
T Consensus 13 C~C~~~~~~g~mI~CD~~~C~-~W~H~~Cvgi~~~~~~~~~~p~--~~~C~~Cr~~r 66 (68)
T 2rsd_A 13 CICSSTMVNDSMIQCEDQRCQ-VWQHLNCVLIPDKPGESAEVPP--VFYCELCRLSR 66 (68)
T ss_dssp CTTCCCSCCSCEEECSCTTTC-EEEETTTSCCCSSTTSCCCCCS--SCCCHHHHHHH
T ss_pred eECCCCcCCCCEEEECCCCCC-CeEchhhCCCCcccccccCCCC--cEECcCccCcc
Confidence 4899988888899999 498 6899999987321 2333 69999998644
No 45
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.92 E-value=7.9e-05 Score=60.02 Aligned_cols=53 Identities=19% Similarity=0.431 Sum_probs=40.1
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCC----CCCCcccccCCCcCcCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASF----EDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~V----Pe~~~WyCp~C~s~~~~ 57 (549)
+.| +||...+.+.++.||.|+ .-||..|+++..... +....|||+.|......
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~-~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCE-EWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSC-CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CEE-ECCCccCCCCEEEeCCCC-CcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 345 899998878999999998 689999999853221 01247999999876543
No 46
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=96.80 E-value=0.0001 Score=66.46 Aligned_cols=48 Identities=31% Similarity=0.750 Sum_probs=38.6
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCC-----CCC--CCCCcccccCCCcC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLP-----ASF--EDDVLWYCEDCEPK 54 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l-----~~V--Pe~~~WyCp~C~s~ 54 (549)
...|.+||+.|. |+.||.|- ++||..|+.+++ +.+ |+ +.|+|+-|...
T Consensus 57 ~~~C~vC~dGG~---LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~-~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAEGGN---LICCDFCH-NAFCKKCILRNLGRRELSTIMDEN-NQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCCCSE---EEECSSSS-CEEEHHHHHHHTCHHHHHHHTCTT-SCCCCTTTCCG
T ss_pred CCcCeecCCCCe---eEecCCCc-hhhhHHHhCCCcchhHHHHhccCC-CCeEcCCcCCH
Confidence 356999999875 99999998 799999999752 344 54 59999999763
No 47
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.77 E-value=0.00016 Score=58.48 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=41.5
Q ss_pred cccccccCcCC-ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 3 TVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 3 tvC~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
.+-++||...+ .+.++.||.|+ .-||.-|++.....++....|+|+.|....+
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~-~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACK-DWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTC-CEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred eeEEECCCcCCCCCCEEEcCCCC-CCEecccccccccccCCCCEEECCCCcccCC
Confidence 45569998765 46899999998 6899999998755555445799999987543
No 48
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.62 E-value=9.2e-05 Score=63.75 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=40.7
Q ss_pred CcccccccCcCCc-cceeecc-CCCCCCcccccCCCCCCC------CCCCCcccccCCCcCcCCC
Q 008897 2 VTVCQQCGDKGFY-EALIGCE-KCQTTAVHIYCLPVLPAS------FEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 2 vtvC~iCGd~Gfe-DkLLlCD-~Cd~~A~HtYCL~~~l~~------VPe~~~WyCp~C~s~~~~~ 58 (549)
+..|.+|+..-++ +..+.|| .|+ .-||.-|.++.... -|+ ..|+|+.|.......
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~-~WfH~~CVglt~~~~~~i~~~~~-~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQ-KWFHRECTGMTESAYGLLTTEAS-AVWACDLCLKTKEGS 65 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTC-CEEEGGGTTCCHHHHHHHHHCTT-EEECCHHHHHTTTTC
T ss_pred cCCCCCCCCccCCCCCEEEecCCcc-cccccccCCcCHHHHHhhccCCC-CCEECccccCcCCCC
Confidence 5689999998433 4578897 998 68999999985211 143 589999999765443
No 49
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.35 E-value=0.00074 Score=51.22 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=36.5
Q ss_pred cccccccCcCC-ccceeecc-CCCCCCcccccCCCCCCCCCCCCcccccCCC
Q 008897 3 TVCQQCGDKGF-YEALIGCE-KCQTTAVHIYCLPVLPASFEDDVLWYCEDCE 52 (549)
Q Consensus 3 tvC~iCGd~Gf-eDkLLlCD-~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~ 52 (549)
-.|.+|+...+ .+..+.|| .|+ .=||..|++........ ..|+|+.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~-~WfH~~Cvgl~~~~~~~-~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCD-EWFHQVCVGVSPEMAEN-EDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTC-CEEETTTTTCCHHHHHH-SCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCC-ccCcccccCCCccccCC-CCEECCCCC
Confidence 46889999875 56788999 898 67999999985332222 589999995
No 50
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.81 E-value=0.0041 Score=52.93 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=32.0
Q ss_pred cCCccceeeccCCCCCCcccccCCCCCCCCCCC---CcccccCCCcCc
Q 008897 11 KGFYEALIGCEKCQTTAVHIYCLPVLPASFEDD---VLWYCEDCEPKV 55 (549)
Q Consensus 11 ~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~---~~WyCp~C~s~~ 55 (549)
..++++|+.|+.|+ ..+|..|++++...+++. ..|+|+.|..+.
T Consensus 69 ~~~~~~m~~C~~C~-~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 69 QDFEKKLMECCICN-EIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp CCGGGSCEEETTTC-CEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred cccCcceEEeeecC-CeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 45667799999998 689999999875544332 259999998753
No 51
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.76 E-value=0.00078 Score=53.83 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=37.6
Q ss_pred CcccccccCcCC-ccceeecc-CCCCCCcccccCCCCCCC------CCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGF-YEALIGCE-KCQTTAVHIYCLPVLPAS------FEDDVLWYCEDCE 52 (549)
Q Consensus 2 vtvC~iCGd~Gf-eDkLLlCD-~Cd~~A~HtYCL~~~l~~------VPe~~~WyCp~C~ 52 (549)
...|.+|+...+ .+..+.|| .|+ .-||.-|.++.... -|. ..|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~-~WfH~~Cvglt~~~~~~l~~e~~-~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQ-KWFHRICTGMTETAYGLLTAEAS-AVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTC-CEEEHHHHTCCHHHHHHHHHCTT-EEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCcc-ccCchhccCCCHHHHHHhhccCC-CcEECcCcc
Confidence 467999999854 45788999 998 57999999984321 143 489999996
No 52
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.67 E-value=0.0023 Score=60.12 Aligned_cols=52 Identities=21% Similarity=0.540 Sum_probs=39.6
Q ss_pred cccccccCcCCcc----ceeeccCCCCCCcccccCCCCC------CCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYE----ALIGCEKCQTTAVHIYCLPVLP------ASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeD----kLLlCD~Cd~~A~HtYCL~~~l------~~VPe~~~WyCp~C~s~~ 55 (549)
..|++|+..-.++ ..+.||.|+ .-+|.-|.+... +.+|+...|+|+.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~-~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCD-RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTC-CEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCC-cccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4699999886655 389999998 589999999742 123543479999998754
No 53
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.61 E-value=0.0075 Score=51.75 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=37.3
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCC------------CCCCCCCCcccccCCCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVL------------PASFEDDVLWYCEDCEP 53 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~------------l~~VPe~~~WyCp~C~s 53 (549)
..-|.+|..-..+ .|+-|.-|. +.||.-||..+ +..-+ +.-|+|+.|.+
T Consensus 15 D~~C~VC~~~t~~-~l~pCRvC~-RvfH~~CL~r~gy~~~~~a~e~~l~A~T-~~GWSC~~Cen 75 (89)
T 1wil_A 15 DEMCDVCEVWTAE-SLFPCRVCT-RVFHDGCLRRMGYIQGDSAAEVTEMAHT-ETGWSCHYCDN 75 (89)
T ss_dssp SCCCTTTCCCCSS-CCSSCSSSS-SCCCHHHHHHHTSCCCCCCCSCSCCCSS-SSSCCCTTTCC
T ss_pred CcccCcccccccc-ceecccccc-ccccHhhcccccccccHHHHHHHHccCC-CCCccccccch
Confidence 3569999988755 488999998 68999998753 22334 45799999965
No 54
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.48 E-value=0.01 Score=63.88 Aligned_cols=52 Identities=27% Similarity=0.633 Sum_probs=37.6
Q ss_pred cccccccCcCCcc-------------------------------ceeeccCCCCCCcccccCCCCCCCCCCCCcccccCC
Q 008897 3 TVCQQCGDKGFYE-------------------------------ALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDC 51 (549)
Q Consensus 3 tvC~iCGd~GfeD-------------------------------kLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C 51 (549)
-.|..||..+.++ ..+.||.|+ .=||.-|.+...........||||.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~kk~~~~~n~~~~mI~CD~C~-~WfH~~CVgi~~~~a~~~~~y~Cp~C 91 (528)
T 3pur_A 13 DRCGGCGKFTHEDDLIALEEEKKKEKEKPLMSKKKSHHHKKNDFQWIGCDSCQ-TWYHFLCSGLEQFEYYLYEKFFCPKC 91 (528)
T ss_dssp CCCTTTCCCC-------------------CCSCCCTTTTTTSTTSEEECTTTC-CEEEGGGTTCCGGGTTTEEECCCTTT
T ss_pred chhhcccCCCchhhHHHHHHHhhhhhhhccccccccccCCCcCCCEEECCCCC-cCCCCcCCCCChhHhcCCCeEECcCC
Confidence 4799999888774 457899999 57999999985433322248999999
Q ss_pred CcCc
Q 008897 52 EPKV 55 (549)
Q Consensus 52 ~s~~ 55 (549)
....
T Consensus 92 ~~~~ 95 (528)
T 3pur_A 92 VPHT 95 (528)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8743
No 55
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=94.39 E-value=0.0035 Score=66.31 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=38.9
Q ss_pred ccccccCcCC-ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 4 VCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 4 vC~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
+.|+||...+ ....+.||.|+ .=||..|++...........|||+.|....
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICK-DWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTC-CEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCC-CceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 4459999754 67799999998 689999999864433323479999998644
No 56
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=94.33 E-value=0.0025 Score=66.97 Aligned_cols=53 Identities=28% Similarity=0.385 Sum_probs=41.0
Q ss_pred CcccccccCcCC-ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
+.++|+|+...+ ....+.||.|+ .-||.-|++......+....|+|+.|....
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~C~-~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDMCQ-DWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTTTC-CEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEcCCCC-cccccccCCcCcccccCCCEEECCCCcccc
Confidence 567889999865 57899999998 589999999854333322479999998654
No 57
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=87.90 E-value=0.27 Score=40.96 Aligned_cols=38 Identities=24% Similarity=0.646 Sum_probs=30.7
Q ss_pred eeeccCCCCCCcccccCCCCC------CCCCCCCcccccCCCcCc
Q 008897 17 LIGCEKCQTTAVHIYCLPVLP------ASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 17 LLlCD~Cd~~A~HtYCL~~~l------~~VPe~~~WyCp~C~s~~ 55 (549)
.+.||.|++ -+|.-|.+... ..+|+...|.|+.|....
T Consensus 2 mi~c~~c~~-w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDR-WVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSS-CHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCC-ccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 578999995 79999998753 467876789999998654
No 58
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=81.16 E-value=1.1 Score=39.06 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=36.0
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
.|.+||.... +.|..|. .+||..|++..+...|.+ -|+| |.+...+
T Consensus 60 ~C~~C~k~~~----~~C~~Cp-~sfC~~c~~g~l~~~~~~-~~~c--~~~~~~~ 105 (107)
T 4gne_A 60 QCDECSSAAV----SFCEFCP-HSFCKDHEKGALVPSALE-GRLC--CSEHDPM 105 (107)
T ss_dssp BCTTTCSBCC----EECSSSS-CEECTTTCTTSCEECTTT-TCEE--CTTSCTT
T ss_pred CCCcCCCCCC----cCcCCCC-cchhhhccCCcceecCCC-Ccee--cCCCCCC
Confidence 4778888765 8999998 699999999988777754 6998 6655433
No 59
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=74.20 E-value=0.53 Score=39.89 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=29.6
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
.+|..|+..+ |+.|+ ..+|.||++++ -|.|.+|....-
T Consensus 8 ~~C~~C~~~~-------C~~C~-~c~~~~~~~~~--------~~~~~~c~~~~~ 45 (117)
T 4bbq_A 8 RKCKACVQGE-------CGVCH-YCRDMKKFGGP--------GRMKQSCVLRQC 45 (117)
T ss_dssp SCSHHHHSCC-------CSCSH-HHHHSGGGTSC--------CCSCCCCGGGCC
T ss_pred CcCcCcCCcC-------CCCCC-CCcCCcccCCC--------Cccccchhheee
Confidence 4788888652 99998 58999998763 499999976653
No 60
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.23 E-value=1.9 Score=35.05 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=37.6
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~ 56 (549)
+..|.||-+.-.+. ..|..|+ .+||.+|+.--+..-. .-.||-|+..-.
T Consensus 15 i~~C~IC~~~i~~g--~~C~~C~-h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQG--QSCETCG-IRMHLPCVAKYFQSNA---EPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSS--EECSSSC-CEECHHHHHHHSTTCS---SCCCTTTCSCCC
T ss_pred CCcCcchhhHcccC--CccCCCC-chhhHHHHHHHHHhcC---CCCCCCCcCcCC
Confidence 57899999998865 4788998 5899999986554432 257999987654
No 61
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.58 E-value=5.2 Score=33.93 Aligned_cols=36 Identities=28% Similarity=0.628 Sum_probs=29.6
Q ss_pred ccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCc
Q 008897 14 YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (549)
Q Consensus 14 eDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s 53 (549)
+-.|++|.-|.....|..|+... .- ...|.|..|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~l~--~~--~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSSLR--PN--SKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGTCC--TT--CSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhCCc--CC--CCCEECCcCcc
Confidence 46899999999999999999962 22 34799999983
No 62
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=62.12 E-value=3 Score=36.12 Aligned_cols=52 Identities=17% Similarity=0.459 Sum_probs=39.4
Q ss_pred CcccccccCc----CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCC
Q 008897 2 VTVCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (549)
Q Consensus 2 vtvC~iCGd~----GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~ 58 (549)
..+|+||||. .+-++-+-|.+|.+ +.=.-|..+ ..- ++.-.|+.|.++-.+-
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~F-PvCrpCyEY---Erk-eG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGF-PACRPCYEY---ERR-EGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCC-CCCHHHHHH---HHH-TSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCC-hhhHHHHHH---HHh-ccCccccccCCccccc
Confidence 3589999997 55668899999985 566667776 333 3689999999887654
No 63
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=61.24 E-value=2.4 Score=40.93 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=37.4
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
+..|.+|-+.-... ..|..|+ .++|.+|+........ .--||.|...=
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~-~~~H~~C~~~~~~~~~---~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCG-IRMHLPCVAKYFQSNA---EPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSC-CEECHHHHHHHTTTCS---SCBCTTTCCBC
T ss_pred CCcCcchhhHHhCC--cccCccC-hHHHHHHHHHHHHhCC---CCCCCCCCCCC
Confidence 56799999999875 7899998 6899999987544432 35799998653
No 64
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=57.11 E-value=13 Score=28.52 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=16.1
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCc
Q 008897 31 YCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 31 YCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
-.-+-+-..+|+ +|.||.|....
T Consensus 24 i~pGt~f~~lP~--dw~CP~Cg~~K 46 (52)
T 1e8j_A 24 IKPGTKFEDLPD--DWACPVCGASK 46 (52)
T ss_dssp CCSSCCTTSSCT--TCCCSSSCCCT
T ss_pred cCCCCchHHCCC--CCcCCCCCCcH
Confidence 344445567886 69999998643
No 65
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=55.69 E-value=6.9 Score=29.75 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=26.6
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.+.|+.|++.=+- -+.|..|+ .-.|.-|...
T Consensus 14 ~t~C~~C~k~i~~--G~kC~~Ck-~~cH~kC~~~ 44 (49)
T 1kbe_A 14 SQVCNVCQKSMIF--GVKCKHCR-LKCHNKCTKE 44 (49)
T ss_dssp SCCCSSSCCSSCC--EEEETTTT-EEESSSCTTT
T ss_pred CcCccccCceeEC--cCCCCCCC-CccchhhcCc
Confidence 4789999999884 37899998 6799999985
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=55.39 E-value=0.9 Score=35.21 Aligned_cols=48 Identities=27% Similarity=0.455 Sum_probs=34.6
Q ss_pred CcccccccCcCCccceeeccCCCCC---CcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTT---AVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~---A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
...|-||-+.+.++++.-| .|. + .+|..||..-+.. .+.+.|+-|+..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC-~C~-gs~~~~H~~Cl~~W~~~---~~~~~C~~C~~~ 56 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRAC-GCT-GELENVHRSCLSTWLTI---SRNTACQICGVV 56 (60)
T ss_dssp CCEETTTTEECSCCCCCSC-CCS-SGGGSCCHHHHHHHHHH---HTCSBCTTTCCB
T ss_pred CCEeEEeecCCCCceecCc-CCC-CchhhhHHHHHHHHHHh---CCCCccCCCCCe
Confidence 3579999877777777776 565 4 8999999864321 235899999865
No 67
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=52.95 E-value=7 Score=32.92 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=22.6
Q ss_pred cceeeccCCCCCCcc--------cccCCCCCCCCCCCCcccccCCCcCc
Q 008897 15 EALIGCEKCQTTAVH--------IYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 15 DkLLlCD~Cd~~A~H--------tYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
.....|..|. +-|. ...-+.+-..+|+ +|.||.|....
T Consensus 25 m~~y~C~vCG-yvYD~~~Gdp~~gI~pGT~fedlPd--dW~CPvCga~K 70 (81)
T 2kn9_A 25 YKLFRCIQCG-FEYDEALGWPEDGIAAGTRWDDIPD--DWSCPDCGAAK 70 (81)
T ss_dssp CCEEEETTTC-CEEETTTCBTTTTBCTTCCTTTSCT--TCCCTTTCCCG
T ss_pred cceEEeCCCC-EEEcCCcCCcccCcCCCCChhHCCC--CCcCCCCCCCH
Confidence 3467788886 2111 1123334456886 69999998643
No 68
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.50 E-value=20 Score=29.00 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=27.1
Q ss_pred CcccccccCcC--CccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~G--feDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.+.|..|++.= .-..-+.|..|+ +..|.-|...
T Consensus 28 pt~C~~C~~~lwGl~kqg~~C~~C~-~~~Hk~C~~~ 62 (83)
T 2yuu_A 28 PTFCSVCKDFVWGLNKQGYKCRQCN-AAIHKKCIDK 62 (83)
T ss_dssp CCCCSSSCCCCCSSSCCEEEETTTC-CEECTTGGGT
T ss_pred CcChhhcChhhccccccccccCCcC-CeeChhhhhh
Confidence 47899999864 345678999998 6899999986
No 69
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=49.33 E-value=8.2 Score=31.40 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCcccccCCCcCc
Q 008897 33 LPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 33 L~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
-+-+-..+|+ +|.||.|....
T Consensus 30 pGT~f~~lPd--dw~CP~Cga~K 50 (70)
T 1dx8_A 30 PGTPFVDLSD--SFMCPACRSPK 50 (70)
T ss_dssp SSCCGGGSCT--TCBCTTTCCBG
T ss_pred CCCchhhCCC--CCcCCCCCCCH
Confidence 3344456886 69999998644
No 70
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=48.32 E-value=5.3 Score=30.30 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=12.5
Q ss_pred CCCCCCCCcccccCCCcC
Q 008897 37 PASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 37 l~~VPe~~~WyCp~C~s~ 54 (549)
...+|+ +|.||.|...
T Consensus 24 f~~lP~--dw~CP~Cg~~ 39 (46)
T 6rxn_A 24 FDQLPD--DWCCPVCGVS 39 (46)
T ss_dssp GGGSCT--TCBCTTTCCB
T ss_pred hhhCCC--CCcCcCCCCc
Confidence 457886 6999999864
No 71
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=47.57 E-value=7.1 Score=33.25 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCcccccCCCcC
Q 008897 34 PVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 34 ~~~l~~VPe~~~WyCp~C~s~ 54 (549)
+-+...+|+ +|.||.|...
T Consensus 59 GT~fedlPd--dW~CPvCga~ 77 (87)
T 1s24_A 59 GTRFEDIPD--DWCCPDCGAT 77 (87)
T ss_dssp CCCGGGCCT--TCCCSSSCCC
T ss_pred CCChhHCCC--CCCCCCCCCC
Confidence 344467886 6999999764
No 72
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=44.92 E-value=13 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=26.9
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.+.|..|++.-. .-+.|..|+ ...|.-|...
T Consensus 14 pt~C~~C~~~l~--qG~~C~~C~-~~~H~~C~~~ 44 (52)
T 1faq_A 14 LAFCDICQKFLL--NGFRCQTCG-YKFHEHCSTK 44 (52)
T ss_dssp CEECTTSSSEEC--SEEECTTTT-CCBCSTTSSS
T ss_pred CcCCCCcccccc--cCCEeCCCC-CeEChhHHhh
Confidence 478999999876 678999998 7899999986
No 73
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=42.97 E-value=9.9 Score=29.55 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=15.1
Q ss_pred cCCCCCCCCCCCCcccccCCCcCc
Q 008897 32 CLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 32 CL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
.-+-+-..+|+ +|.||.|....
T Consensus 25 ~pGt~f~~lP~--dw~CP~Cga~K 46 (55)
T 2v3b_B 25 PAGTRWEDIPA--DWVCPDCGVGK 46 (55)
T ss_dssp CTTCCGGGSCT--TCCCTTTCCCG
T ss_pred CCCCChhHCCC--CCcCCCCCCCH
Confidence 33444456886 69999998643
No 74
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=41.75 E-value=9.2 Score=31.84 Aligned_cols=32 Identities=22% Similarity=0.576 Sum_probs=26.8
Q ss_pred ccccccCcCCccceeeccCCCCCCcccccCCCCC
Q 008897 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLP 37 (549)
Q Consensus 4 vC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l 37 (549)
.|.+|+..+ ......|..|++ ..|..|...+.
T Consensus 49 ~C~~C~~~~-~~~~Y~C~~C~f-~lH~~Ca~~p~ 80 (89)
T 1v5n_A 49 TCDKCEEEG-TIWSYHCDECDF-DLHAKCALNED 80 (89)
T ss_dssp CCTTTSCCC-CSCEEECTTTCC-CCCHHHHHCSS
T ss_pred EeCCCCCcC-CCcEEEcCCCCC-eEcHHhcCCCC
Confidence 699999986 467899999995 69999987653
No 75
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=41.49 E-value=11 Score=29.03 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCcccccCCCcC
Q 008897 33 LPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 33 L~~~l~~VPe~~~WyCp~C~s~ 54 (549)
-+-+-..+|+ +|.||.|...
T Consensus 25 pGt~f~~lP~--dw~CP~Cg~~ 44 (52)
T 1yk4_A 25 PGTKFEDLPD--DWVCPLCGAP 44 (52)
T ss_dssp TTCCGGGSCT--TCBCTTTCCB
T ss_pred CCCCHhHCCC--CCcCCCCCCC
Confidence 3344457886 6999999764
No 76
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=40.67 E-value=19 Score=34.01 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=28.8
Q ss_pred cccCcCC-ccceeeccCCCCCCcccccCCCCCCC-CCCC--CcccccCCCc
Q 008897 7 QCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPAS-FEDD--VLWYCEDCEP 53 (549)
Q Consensus 7 iCGd~Gf-eDkLLlCD~Cd~~A~HtYCL~~~l~~-VPe~--~~WyCp~C~s 53 (549)
-||..|+ -.+.++|++|. .-+|.-|+...... +|-. -.-.|-.|..
T Consensus 9 YCG~~~~~~~~mLqC~~C~-qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICT-KWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp --CTTCCTTSCEEECTTTC-CEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred EcCCCCCCCceeEeecccc-ceecHHHhcccccCccccceeEEEEccccCC
Confidence 3777655 44678999998 68999999854322 3311 0234888844
No 77
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=38.08 E-value=16 Score=28.56 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.2
Q ss_pred CCCCCCCCCcccccCCCcC
Q 008897 36 LPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 36 ~l~~VPe~~~WyCp~C~s~ 54 (549)
+-..+|+ +|.||.|...
T Consensus 29 ~fe~lP~--dw~CP~Cg~~ 45 (54)
T 4rxn_A 29 DFKDIPD--DWVCPLCGVG 45 (54)
T ss_dssp CGGGSCT--TCBCTTTCCB
T ss_pred ChhHCCC--CCcCcCCCCc
Confidence 4457886 6999999764
No 78
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=37.59 E-value=22 Score=27.39 Aligned_cols=33 Identities=30% Similarity=0.729 Sum_probs=27.1
Q ss_pred CcccccccCc--CCccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~--GfeDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.+.|..|++. |.-..-+.|..|+ +..|.-|...
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~-~~~Hk~C~~~ 57 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACG-MNVHHRCQTK 57 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSC-CEECTTTTTT
T ss_pred CcCchhcChhheecCCcccccCCCC-CccCHhHHhh
Confidence 4789999986 4345678999998 7899999986
No 79
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=36.41 E-value=14 Score=28.51 Aligned_cols=33 Identities=33% Similarity=0.748 Sum_probs=27.7
Q ss_pred CcccccccCc--CCccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~--GfeDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.+.|..|++. |.-..-+.|..|+ ...|.-|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~-~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCG-MNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTC-CEECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCC-CeEchhHhhh
Confidence 4689999986 5566778999998 6899999886
No 80
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.08 E-value=28 Score=26.57 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=34.9
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCCCccCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPSTIVNP 64 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~~~~n~ 64 (549)
...|.||-+.-.....+.--.|.. .||..|+...+.. ...||-|+..........|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H-~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNH-LFHDSCIVPWLEQ-----HDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSC-EEETTTTHHHHTT-----TCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCC-eecHHHHHHHHHc-----CCcCcCcCCccCCcccCCCC
Confidence 357999987643332222224874 5888888753321 35899999887665544443
No 81
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=35.51 E-value=26 Score=25.70 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=13.7
Q ss_pred cccccccC----cCCccceeeccCCC
Q 008897 3 TVCQQCGD----KGFYEALIGCEKCQ 24 (549)
Q Consensus 3 tvC~iCGd----~GfeDkLLlCD~Cd 24 (549)
.+|+.||. .+...-.+.|..|.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG 31 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCG 31 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccC
Confidence 46888876 22233457788776
No 82
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.28 E-value=17 Score=32.30 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=42.3
Q ss_pred ccccccCcCCccc-eeeccCCCCCCcccccCCCC-CCCCCCCCcccccCCC---cCcCCCCCccCCCCC
Q 008897 4 VCQQCGDKGFYEA-LIGCEKCQTTAVHIYCLPVL-PASFEDDVLWYCEDCE---PKVAKPSTIVNPSSV 67 (549)
Q Consensus 4 vC~iCGd~GfeDk-LLlCD~Cd~~A~HtYCL~~~-l~~VPe~~~WyCp~C~---s~~~~~~~~~n~ss~ 67 (549)
.|.+|..--.|.. --+||+|.++.+..-|.-=- ...+. ...||.+|. .+++|=+-+.|--|+
T Consensus 31 kC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~--dAYYC~eC~~lEKDRDGCPriiN~Gs~ 97 (109)
T 2k0a_A 31 KCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVN--DAFYCWECCRLGKDKDGCPRILNLGSN 97 (109)
T ss_dssp CCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCE--ECEECHHHHHHTSTTSCCCCBCSCSSC
T ss_pred cccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcc--cceehHhhhhhhccccCCCeeEecCcc
Confidence 5788887666644 45899999888777775431 11233 379999995 667887878886663
No 83
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.81 E-value=31 Score=27.88 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=31.0
Q ss_pred cccccccCcCC-ccceeeccCCC--CCCcccccCCCCCCCCCCCCcccccCCCcCcCC
Q 008897 3 TVCQQCGDKGF-YEALIGCEKCQ--TTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~Gf-eDkLLlCD~Cd--~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~ 57 (549)
..|.||-+... .+.|++=-+|. ...+|..|+..-+.. .+...||-|+....-
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~---~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS---SDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH---HCCSBCSSSCCBCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh---CCCCCCCCCCCeeec
Confidence 57999986543 23333211232 147999999864322 123689999987643
No 84
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.46 E-value=11 Score=35.13 Aligned_cols=49 Identities=20% Similarity=0.541 Sum_probs=33.4
Q ss_pred cccccccCcCCccceeecc--CCCCCCcccccCCCC-----CCCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVL-----PASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD--~Cd~~A~HtYCL~~~-----l~~VPe~~~WyCp~C~s~~ 55 (549)
-.|.+||++| .|++|| .|- ++|=.-|+... ++.+-....|.|.-|....
T Consensus 80 ~yC~wC~~Gg---~l~~Cdn~~C~-r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 80 SYCTICCGGR---EVLMCGNNNCC-RCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SSCTTTSCCS---EEEECSSTTTC-CEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred ceeeEecCCC---eEEeeCCCCCC-CchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 4699999876 699999 796 55555555421 2222334589999998743
No 85
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.34 E-value=22 Score=29.92 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=26.3
Q ss_pred CCcccccccCcCCcc-ceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 1 MVTVCQQCGDKGFYE-ALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 1 mvtvC~iCGd~GfeD-kLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
|...|+.|+..=..+ ....|..|+. .|+. .-|||+|....
T Consensus 1 M~~~CP~C~~~l~~~~~~~~C~~C~~-------------~~~~--~afCPeCgq~L 41 (81)
T 2jrp_A 1 MEITCPVCHHALERNGDTAHCETCAK-------------DFSL--QALCPDCRQPL 41 (81)
T ss_dssp CCCCCSSSCSCCEECSSEEECTTTCC-------------EEEE--EEECSSSCSCC
T ss_pred CCCCCCCCCCccccCCCceECccccc-------------cCCC--cccCcchhhHH
Confidence 778899998543222 3556999973 3443 23888887766
No 86
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=30.09 E-value=23 Score=25.81 Aligned_cols=26 Identities=31% Similarity=0.810 Sum_probs=18.9
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLP 34 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~ 34 (549)
...|..||.. .+..|.+|. .+.||..
T Consensus 9 ~~~C~~C~~~----~~~~C~~C~---~~~YCs~ 34 (52)
T 2jw6_A 9 EQSCVNCGRE----AMSECTGCH---KVNYCST 34 (52)
T ss_dssp --CCSSSSSS----CSEECTTTC---SSEESSH
T ss_pred CCcCCCCCCC----CcCcCCCCC---CEeecCH
Confidence 3578889874 588999997 4678874
No 87
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=29.78 E-value=27 Score=26.59 Aligned_cols=25 Identities=32% Similarity=0.784 Sum_probs=19.0
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLP 34 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~ 34 (549)
..|..||. ..+..|.+|. .+.||..
T Consensus 16 ~~C~~C~~----~~~~~Cs~C~---~v~YCs~ 40 (60)
T 2dj8_A 16 ESCWNCGR----KASETCSGCN---TARYCGS 40 (60)
T ss_dssp CCCSSSCS----CCCEECTTTS---CCEESSH
T ss_pred cccccCCC----CCcccCCCCC---CEeeeCH
Confidence 56888987 3488999997 4678864
No 88
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=29.22 E-value=16 Score=25.39 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.4
Q ss_pred CCcccccCCCcCc
Q 008897 43 DVLWYCEDCEPKV 55 (549)
Q Consensus 43 ~~~WyCp~C~s~~ 55 (549)
.++|+|+.|...+
T Consensus 3 ~gDW~C~~C~~~N 15 (32)
T 2lk0_A 3 FEDWLCNKCCLNN 15 (32)
T ss_dssp CSEEECTTTCCEE
T ss_pred CCCCCcCcCcCCc
Confidence 4699999997654
No 89
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.02 E-value=41 Score=27.34 Aligned_cols=33 Identities=27% Similarity=0.687 Sum_probs=27.1
Q ss_pred CcccccccCcCC--ccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGF--YEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~Gf--eDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.+.|..|++.=. -..-+.|..|+ +..|.-|...
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~~C~-~~~Hk~C~~~ 62 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCDTCD-MNVHKQCVIN 62 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECSSSC-CEEETTTTTT
T ss_pred CcCCcccCccccccccCCCcCCCcC-CccCHhHHhh
Confidence 478999998643 45678899998 7899999986
No 90
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=28.92 E-value=29 Score=26.53 Aligned_cols=26 Identities=35% Similarity=0.767 Sum_probs=19.9
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLP 34 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~ 34 (549)
...|..||.. .+..|.+|. .+.||..
T Consensus 13 ~~~C~~C~~~----~~~~Cs~C~---~v~YCs~ 38 (60)
T 2od1_A 13 SESCWNCGRK----ASETCSGCN---TARYCGS 38 (60)
T ss_dssp SSCCTTTSSC----CCEECTTTS---CCEESSH
T ss_pred CCccccCCCc----ccccCCCCC---CeeecCH
Confidence 3579999883 478999997 4678875
No 91
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.54 E-value=10 Score=28.77 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=35.2
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCcCCCCCccCCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPSTIVNPS 65 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~~~~~~~~n~s 65 (549)
...|.||-+.-.....+.--.|.. .||..|+...+.. ...||-|+..........+++
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H-~f~~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~~~~s 72 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKH-AFHRKCLIKWLEV-----RKVCPLCNMPVLQLAQLSGPS 72 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTE-EEEHHHHHHHHHH-----CSBCTTTCCBCSSCCSCCCSC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCC-EecHHHHHHHHHc-----CCcCCCcCcccccccccCCCC
Confidence 357999988744332222225874 5888888753221 237999998876655444443
No 92
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.39 E-value=5.8 Score=41.41 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=32.0
Q ss_pred cccccccCcCCccceeecc--CCCCCCcccccCCCC-----CCCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVL-----PASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD--~Cd~~A~HtYCL~~~-----l~~VPe~~~WyCp~C~s~~ 55 (549)
..|.+||+.| .|++|| .|- ++|=.-|++.. ++.+-....|.|.-|....
T Consensus 94 ~yCr~C~~Gg---~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 94 SYCSICCSGE---TLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp CSCTTTCCCS---SCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred ccceEcCCCC---eEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 4699999887 499999 775 34444454421 1223333589999998753
No 93
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=28.21 E-value=34 Score=27.34 Aligned_cols=33 Identities=27% Similarity=0.687 Sum_probs=27.0
Q ss_pred CcccccccCc--CCccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~--GfeDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.|.|..|++. |.-..-+.|..|+ +..|.-|...
T Consensus 34 pt~C~~C~~~lwGl~kqG~~C~~C~-~~~Hk~C~~~ 68 (77)
T 2enn_A 34 PTFCSVCHEFVWGLNKQGYQCRQCN-AAIHKKCIDK 68 (77)
T ss_dssp CEECSSSCCEECCTTCCEEECSSSC-CEEESGGGSS
T ss_pred CcCccccChhhccccccccCcCCCC-CcCCHhHHhh
Confidence 4789999985 3356678999998 7899999986
No 94
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.92 E-value=20 Score=31.55 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=25.2
Q ss_pred CCcccccccCc-CCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 1 MVTVCQQCGDK-GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 1 mvtvC~iCGd~-GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
|...|+.|+.. .-..--..|+.|+. .|.- .-|||+|....
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~-------------~f~~--~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGE-------------FIEM--KALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCC-------------EEEE--EEECTTTCSBC
T ss_pred ccccCccCCCcceecCCEEECccccc-------------hhhc--cccCcchhhHH
Confidence 66789999854 22223556888873 2322 57888887765
No 95
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=26.50 E-value=31 Score=26.39 Aligned_cols=25 Identities=36% Similarity=0.810 Sum_probs=19.4
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLP 34 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~ 34 (549)
..|..||.. .+..|.+|. .+.||..
T Consensus 18 ~~C~~C~~~----~~~~Cs~C~---~~~YCs~ 42 (64)
T 2odd_A 18 ESCWNCGRK----ASETCSGCN---TARYCGS 42 (64)
T ss_dssp SSCTTTSSC----CCEEETTTS---CCEESSH
T ss_pred CcCccccCC----CcccCCCCC---ChhhCCH
Confidence 578899883 488999997 4678874
No 96
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=23.84 E-value=37 Score=27.15 Aligned_cols=32 Identities=22% Similarity=0.610 Sum_probs=27.0
Q ss_pred CcccccccCcCCccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.|.|..||+.= -..-+.|..|+ +..|.-|...
T Consensus 35 pt~C~~C~~~l-~~qG~kC~~C~-~~cHkkC~~~ 66 (72)
T 2fnf_X 35 PGWCDLCGREV-LRQALRCANCK-FTCHSECRSL 66 (72)
T ss_dssp CCBCTTTSSBC-SSCCEECTTSS-CEECTGGGGG
T ss_pred CcchhhhhHHH-HhCcCccCCCC-Ceechhhhcc
Confidence 47799999987 55678899998 7899999875
No 97
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=23.27 E-value=34 Score=24.60 Aligned_cols=33 Identities=30% Similarity=0.654 Sum_probs=26.9
Q ss_pred CcccccccCcCC--ccceeeccCCCCCCcccccCCC
Q 008897 2 VTVCQQCGDKGF--YEALIGCEKCQTTAVHIYCLPV 35 (549)
Q Consensus 2 vtvC~iCGd~Gf--eDkLLlCD~Cd~~A~HtYCL~~ 35 (549)
.+.|..|++.=. -..-+.|..|+ ...|.-|...
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~-~~~H~~C~~~ 45 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCG-MNVHHKCREK 45 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTC-CEECHHHHTT
T ss_pred CCCcCCCCceeeccCCccCEeCCCC-CeECHHHhhh
Confidence 478999998643 45678999998 7899999886
No 98
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.53 E-value=36 Score=23.76 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.4
Q ss_pred CCcccccCCCcCc
Q 008897 43 DVLWYCEDCEPKV 55 (549)
Q Consensus 43 ~~~WyCp~C~s~~ 55 (549)
.++|+|+.|...+
T Consensus 4 ~gDW~C~~C~~~N 16 (33)
T 2k1p_A 4 ANDWQCKTCSNVN 16 (33)
T ss_dssp SSSCBCSSSCCBC
T ss_pred CCCcccCCCCCcc
Confidence 3689999997655
No 99
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=21.15 E-value=32 Score=28.33 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=28.4
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcCc
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~~ 55 (549)
..|.||.+.-..-+.+ .|+. .||..|+...+. .+...||-|+...
T Consensus 16 ~~C~iC~~~~~~p~~~---~CgH-~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 16 CQCGICMEILVEPVTL---PCNH-TLCKPCFQSTVE----KASLCCPFCRRRV 60 (115)
T ss_dssp HBCTTTCSBCSSCEEC---TTSC-EECHHHHCCCCC----TTTSBCTTTCCBC
T ss_pred CCCccCCcccCceeEc---CCCC-HHhHHHHHHHHh----HCcCCCCCCCccc
Confidence 3599998775544443 6873 355566665332 2357899999865
No 100
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=20.81 E-value=64 Score=24.31 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=31.2
Q ss_pred cccccccCcCCccceeeccCCCCCCcccccCCCCCCCC--CCCCcccccCCCcCcCC
Q 008897 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASF--EDDVLWYCEDCEPKVAK 57 (549)
Q Consensus 3 tvC~iCGd~GfeDkLLlCD~Cd~~A~HtYCL~~~l~~V--Pe~~~WyCp~C~s~~~~ 57 (549)
..|.||.+.-..-+.+ .|.. .||..|+...+..- .....-.||.|+.....
T Consensus 13 ~~C~IC~~~~~~p~~l---~CgH-~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTEPLSL---DCGH-SLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSSCCCC---SSSC-CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCCeeEC---CCCC-HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4699998874443333 6874 46777777543321 11235789999987643
No 101
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=20.31 E-value=48 Score=23.40 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred CcccccccCcCCc-cceeeccCCCCCCcccccCCCCCCCCCCCCcccccCCCcC
Q 008897 2 VTVCQQCGDKGFY-EALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (549)
Q Consensus 2 vtvC~iCGd~Gfe-DkLLlCD~Cd~~A~HtYCL~~~l~~VPe~~~WyCp~C~s~ 54 (549)
...|.||-+.-.. +.......|.. .||.-|+...+.. ...||-|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGH-GFHAECVDMWLGS-----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCC-EECTTHHHHTTTT-----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCC-cccHHHHHHHHHc-----CCcCcCCCCE
Confidence 3579999876433 33444457874 6888888764332 3579999864
Done!