BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008899
(549 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 160/276 (57%), Gaps = 18/276 (6%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDEA Q E S IPL+ G +++GD QLP V S + + +SLF R+
Sbjct: 1587 VIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEK- 1644
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGA--NVKSKSYEKHYLPGTELGPYSFIN 318
N S +LL+VQYRMHPSIS FP+ +FY+ ++ DG ++ +K P L PY F +
Sbjct: 1645 NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQLEP---LAPYKFFD 1701
Query: 319 IIGGSEE--FIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVS----IGVVSPYTAQAVA 372
II G +E S NM E+ V I+++ L++ + K+ IG++SPY Q
Sbjct: 1702 IISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKF---DNKIDFTGKIGIISPYREQMQK 1758
Query: 373 IRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRC-NAGGSIGFISKPQRVNVAL 431
+RK+ + ++ +IDGFQG E++II+IS VR + S+GF+ +R+NVAL
Sbjct: 1759 MRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVAL 1818
Query: 432 TRARHCLWILGNERTLISSESIWGALVCDAKARQCF 467
TRA+ +W+LG++R+L S+ +W L+ DAK R C
Sbjct: 1819 TRAKTSIWVLGHQRSLAKSK-LWRDLIEDAKDRSCL 1853
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 158/265 (59%), Gaps = 4/265 (1%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERL-TS 259
++IDEAAQ E S IPL+ G V++GD QLP V SK S + G+ +SL+ R+
Sbjct: 1513 VIIDEAAQAVELSSIIPLKY-GCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFKQ 1571
Query: 260 LNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINI 319
N S LL++QYRM+P IS FP+ FY +++LDG N+ S + + +LG Y F N+
Sbjct: 1572 HNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNM-SAVTSRPWHEDPQLGIYRFFNV 1630
Query: 320 IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGS 379
G S N+ E S ++ + ++L + ++ + IGVV+PY +Q +R +
Sbjct: 1631 HGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQR 1690
Query: 380 EYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLW 439
+Y + + + ++DGFQG E+DIII S VR + G IGF+ +R+NVALTRA+ L+
Sbjct: 1691 KYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLY 1750
Query: 440 ILGNERTLISSESIWGALVCDAKAR 464
I+GN + L+ E I+ +L+ DAK R
Sbjct: 1751 IVGNSKPLM-QEDIFYSLIEDAKTR 1774
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 161/306 (52%), Gaps = 7/306 (2%)
Query: 174 FKRASLFFSTAS-SSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDE 232
+ A++ F+T S S L + + + ++IDEAAQ E + IPL L+GD
Sbjct: 459 LEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLA-TRCKQVFLVGDP 517
Query: 233 CQLPAMVASKISDEAGFGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILD 292
QLPA V S ++ ++G+G S+FERL + +L QYRMHP I FP+ QFY + D
Sbjct: 518 KQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALED 577
Query: 293 GANVKSKSYEKHYLPGTELGPYSFINIIGGSEE---FIYHSCRNMVEVSVVIKILQKLYK 349
G+++++++ + + GP+ F +I G E S N+ EV V+ I +L
Sbjct: 578 GSDIEAQT-TRDWHKYRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVT 636
Query: 350 AWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIIST 409
+ K + ++SPY Q + + + + V + ++DGFQG E+D+ I S
Sbjct: 637 MYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSC 696
Query: 410 VRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKARQCFFN 469
VR N G IGF+S +R+NV +TRA+ + ++G+ TL S+ +W L+ A+ R F
Sbjct: 697 VRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATL-KSDPLWKNLIESAEQRNRLFK 755
Query: 470 ADEDRN 475
+ N
Sbjct: 756 VSKPLN 761
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 6/271 (2%)
Query: 198 LNF--LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFE 255
LNF ++IDEAAQ E ++ IPL+ G +L+GD QLP V SK + + +SLF
Sbjct: 1370 LNFSTVIIDEAAQAVELDTIIPLRY-GAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFV 1428
Query: 256 RLT-SLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPY 314
R+ + ++ LL++QYRMHP IS FP+ +FY +++ DG N+ K+ + ++ + Y
Sbjct: 1429 RIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHV-NPKFTQY 1487
Query: 315 SFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIR 374
++ G S N+ EV ++ ++ +L + IGV++PY +Q +R
Sbjct: 1488 RLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELR 1547
Query: 375 KKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRA 434
+ +Y T+ ++++DGFQG E+DII S V+ + IGF+ +R+NVALTRA
Sbjct: 1548 RAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRA 1607
Query: 435 RHCLWILGNERTLISSESIWGALVCDAKARQ 465
R L I+GN TL ++ +WG+LV DA +R+
Sbjct: 1608 RSSLLIIGNMETL-KTDDLWGSLVDDALSRK 1637
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 170/344 (49%), Gaps = 46/344 (13%)
Query: 140 RRSECLSVLRNLWNSLDELNLPCTTSKLLLEDFCFKRASLFFSTASSSYKLHSVEIKPLN 199
R ++ S +R L LDE ++ TT F ASL A +
Sbjct: 547 RSTQDTSSIRTL--VLDEADIVATT-------LSFSGASLLTKMAGG-----------FD 586
Query: 200 FLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTS 259
++IDEAAQ E+ + IP+Q G VL+GD QLPA + S ++ + + +SLF+RL
Sbjct: 587 IVIIDEAAQAVETSTLIPIQ-HGCKKVVLVGDPKQLPATIISPLAIKYKYDQSLFQRLQE 645
Query: 260 LNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINI 319
N S H+L QYRMH I FP+ FY++ +LDG N+ S++ HY GP F ++
Sbjct: 646 KN-SPHMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRA--THYHSNPFFGPLVFYDL 702
Query: 320 -------IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVA 372
GG F H C+ + + + Q K + IG++SPY Q +A
Sbjct: 703 SWSTETKPGGGSVFNEHECK------MAMYLFQLFTKVYPDEDFASRIGIISPYRQQVLA 756
Query: 373 IRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNA--GGSIGFISKPQRVNVA 430
+R+ ++N G + + ++DGFQG E +III S VR G IGF+S +R+NVA
Sbjct: 757 LREI----FKNYPG--ISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVA 810
Query: 431 LTRARHCLWILGNERTLISSESIWGALVCDAKARQCFFNADEDR 474
LTR R L ILGN + L S W L+ + Q +D+
Sbjct: 811 LTRPRSSLLILGNTKAL-SINKDWNELIQHTQNNQQLIPVTKDQ 853
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 17/275 (6%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E E IPL L G VL+GD QL ++ +K + +AG +SLFERL L
Sbjct: 618 VLIDESTQSAEPECMIPLVL-GCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL 676
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLP-GTELGPYSFINI 319
+ L VQYRMHP +S FP+ FY + +G + + P P F +
Sbjct: 677 QFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSN 736
Query: 320 IGGSE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIG 378
+G E S N E + V KI+ + +KA V + IGV++PY Q R I
Sbjct: 737 LGNEEISASGTSYLNRTEAANVEKIVTRFFKAGV---KPADIGVITPYEGQ----RSYIV 789
Query: 379 SEYENKDGFT------VKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALT 432
+ +N F V+V S+D FQG E+D I++S VR N IGF+S P+R+NVALT
Sbjct: 790 NTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALT 849
Query: 433 RARHCLWILGNERTLISSESIWGALVCDAKARQCF 467
RA++ L I+GN + L E +W L+ K ++C
Sbjct: 850 RAKYGLVIIGNPKVLCKHE-LWHHLLVHFKDKKCL 883
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 141/271 (52%), Gaps = 9/271 (3%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E E IPL L G+ VL+GD CQL ++ K + AG +SLFERL +L
Sbjct: 653 VLIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL 711
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINII 320
L VQYRMHP++S FP+ FY + +G + + P F +
Sbjct: 712 GIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQ 771
Query: 321 GGSEEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIG 378
G EE S N E + V K++ K+ V Q IGV++PY Q I +
Sbjct: 772 LGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQ---IGVITPYEGQRAYIVNYMA 828
Query: 379 SEYENKDGF--TVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARH 436
+ ++V S+D FQG E+D II+S VR N IGF++ P+R+NVALTRAR+
Sbjct: 829 RNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARY 888
Query: 437 CLWILGNERTLISSESIWGALVCDAKARQCF 467
+ ILGN + L S + +W L+ K +C
Sbjct: 889 GIVILGNPKVL-SKQPLWNGLLTHYKEHECL 918
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 147/277 (53%), Gaps = 9/277 (3%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E E IP+ + G +L+GD QL ++ + + +AG +SLFERL SL
Sbjct: 569 VLIDESTQASEPECLIPI-VKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL 627
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINII 320
H L VQYRM+P +S FP+ FY + +G ++ ++ P G
Sbjct: 628 GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWAN 687
Query: 321 GGSEEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRK--K 376
G EE + S N +E +I+ KL++ V +Q IGV++PY Q I + +
Sbjct: 688 YGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQ---IGVITPYEGQRAYILQYMQ 744
Query: 377 IGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARH 436
+ + V+V S+D FQG E+D II+S VR N +IGF+ P+R+NV LTRA++
Sbjct: 745 MNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKY 804
Query: 437 CLWILGNERTLISSESIWGALVCDAKARQCFFNADED 473
L ILGN R+L + ++W L+ + + C D
Sbjct: 805 GLVILGNPRSL-ARNTLWNHLLIHFREKGCLVEGTLD 840
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 138/262 (52%), Gaps = 9/262 (3%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E E +P+ L G +L+GD CQL +V K + +AG +SLFERL L
Sbjct: 639 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 697
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINII 320
L VQYRMHP++S FP+ FY + +G + + + F +
Sbjct: 698 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 757
Query: 321 GGSEEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRK--K 376
G EE S N E + V KI KL KA Q IG+++PY Q + + +
Sbjct: 758 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 814
Query: 377 IGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARH 436
K V++ S+D FQG E+D II+S VR N IGF++ P+R+NVALTRAR+
Sbjct: 815 FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY 874
Query: 437 CLWILGNERTLISSESIWGALV 458
+ I+GN + L S + +W L+
Sbjct: 875 GVIIVGNPKAL-SKQPLWNHLL 895
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 138/262 (52%), Gaps = 9/262 (3%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E E +P+ L G +L+GD CQL +V K + +AG +SLFERL L
Sbjct: 644 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 702
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINII 320
L VQYRMHP++S FP+ FY + +G + + + F +
Sbjct: 703 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 762
Query: 321 GGSEEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRK--K 376
G EE S N E + V KI KL KA Q IG+++PY Q + + +
Sbjct: 763 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 819
Query: 377 IGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARH 436
K V++ S+D FQG E+D II+S VR N IGF++ P+R+NVALTRAR+
Sbjct: 820 FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY 879
Query: 437 CLWILGNERTLISSESIWGALV 458
+ I+GN + L S + +W L+
Sbjct: 880 GVIIVGNPKAL-SKQPLWNHLL 900
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 143/278 (51%), Gaps = 30/278 (10%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVASKISDEAGFGRSLFERLTS 259
++IDE+ Q E E IPL + G +L+GD QL P ++ K+ D AG +SLFERL S
Sbjct: 703 ILIDESTQASEPECLIPL-MMGAKQVILVGDHRQLGPVLLCKKVVD-AGLSQSLFERLIS 760
Query: 260 LNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINI 319
L H L +QYRMHPS++ FP+ Y Q++ + + + + P F N
Sbjct: 761 LGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFFNC 820
Query: 320 IGGSE------EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAI 373
G E FI N E S+ KI+ K + Q IG+++PY Q I
Sbjct: 821 TGSEEISSSGTSFI-----NTTEASICEKIVTKFLELGSLPGQ---IGIITPYEGQRAYI 872
Query: 374 RKKIGSEYENKDGF-------TVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQR 426
+ + K G +++V S+D FQG E+D II+S VR N IGF+ P+R
Sbjct: 873 -----TSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRR 927
Query: 427 VNVALTRARHCLWILGNERTLISSESIWGALVCDAKAR 464
+NVALTRAR L ILGN + L S + +W +L+ K +
Sbjct: 928 LNVALTRARFGLIILGNAKVL-SKDPLWNSLISHFKNK 964
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 144/271 (53%), Gaps = 10/271 (3%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E E +P+ L G +L+GD CQL +V K + AG +SLFERL L
Sbjct: 614 ILIDESMQSTEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 672
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINII 320
L VQYRMHP +S FP+ FY + +G + + + + P + F +
Sbjct: 673 GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDF-PWPQPERPMFFLVT 731
Query: 321 GGSEEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRK--K 376
G EE S N E + V KI + KA + +Q IG+++PY Q + + +
Sbjct: 732 QGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQ---IGIITPYEGQRAYLVQYMQ 788
Query: 377 IGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARH 436
++ +++ S+D FQG E+DIII+S VR N IGF++ P+R+NVALTRA+
Sbjct: 789 YQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKF 848
Query: 437 CLWILGNERTLISSESIWGALVCDAKARQCF 467
+ I+GN + L + + +W L+ K R+
Sbjct: 849 GIIIVGNPKVL-AKQQLWNHLLNFYKDRKVL 878
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 149/280 (53%), Gaps = 21/280 (7%)
Query: 197 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFER 256
P + +++DEA Q E E+ PL + N +L+GD QLP V S + E G+ +S+ R
Sbjct: 2174 PFSCVIVDEAGQSCEIETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 257 LTSL-------NHSKHL----LNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY 305
L N L L VQYRMHP I LFP+ Y + ++ +
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDW 2292
Query: 306 LPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSP 365
PY ++ GSE S N+ E+ +V++I+ KL K +IG+++
Sbjct: 2293 ----PFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKDKRKDVSFRNIGIITH 2347
Query: 366 YTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNA-GGSIGFISKP 424
Y AQ I+K + E++ K +V ++D FQG ++D +I++ VR N+ GSIGF++
Sbjct: 2348 YKAQKTMIQKDLDKEFDRKG--PAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASL 2405
Query: 425 QRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKAR 464
QR+NV +TRA++ L+ILG+ RTL+ ++ W L+ DA+ R
Sbjct: 2406 QRLNVTITRAKYSLFILGHLRTLMENQH-WNQLIQDAQKR 2444
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 143/283 (50%), Gaps = 17/283 (6%)
Query: 186 SSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISD 245
S YK SV +IDEA Q E E IPL L G VL+GD QL +V +K
Sbjct: 554 SKYKFRSV--------LIDEATQASEPECMIPLVL-GAKQVVLVGDHQQLGPVVMNKKVA 604
Query: 246 EAGFGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY 305
A +SLFERL L +S L VQYRMHP +S FP+ FY + +G +
Sbjct: 605 LASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVD 664
Query: 306 LPGTEL-GPYSFINIIGGSE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVV 363
P + P F G E S N E S KI+ ++ V +Q IG+V
Sbjct: 665 FPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ---IGIV 721
Query: 364 SPYTAQAVAIRKKIGSEYE-NKDGF-TVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFI 421
+PY Q I + + + KD + V+V S+D FQG E+D II+S VR + IGF+
Sbjct: 722 TPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFV 781
Query: 422 SKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKAR 464
+ P+R+NVALTRA++ + +LGN + L + ++W V K +
Sbjct: 782 NDPRRLNVALTRAKYGVIVLGNPKVL-AKHALWYHFVLHCKEK 823
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 154/282 (54%), Gaps = 25/282 (8%)
Query: 197 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFER 256
P + +++DEA Q E E+ PL + N +L+GD QLP V S + E G+ +S+ R
Sbjct: 2150 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 257 LTSL---NHSKHL--------LNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY 305
L N +++ L +QYRMHP I LFP+ Y N+K+ +
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVY------NKNLKTNRLTESI 2262
Query: 306 LPGTE--LGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVV 363
+E PY ++ GSE S N+ E+ +V++I+ KL K +IG++
Sbjct: 2263 RCSSEWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKEKRKDISFRNIGII 2321
Query: 364 SPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNA-GGSIGFIS 422
+ Y AQ I+K + E++ K +V ++D FQG ++D II++ VR +A GSIGF++
Sbjct: 2322 THYKAQKTMIQKDLEKEFDKKG--PAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLA 2379
Query: 423 KPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKAR 464
QR+NV +TRA++ L+ILG+ RTL+ ++ W L+ DA+ R
Sbjct: 2380 SLQRLNVTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKR 2420
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 144/277 (51%), Gaps = 19/277 (6%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E E + + + G+ VL+GD CQL +V K + AG +SLFERL L
Sbjct: 607 VLIDESTQATEPEILVSI-MRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL 665
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINII 320
L VQYRMHP +S FP+ FY + +G + + +F
Sbjct: 666 GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFWHC 725
Query: 321 GGSEEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIG 378
GSEE S N E + V K++ KL KA V Q IGV++ Y Q I +
Sbjct: 726 SGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQ---IGVITSYEGQRSFIVNYMH 782
Query: 379 SE-------YENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVAL 431
++ YEN V++ S+D FQG E+D II++ VR N IGF+S P+R+NVA+
Sbjct: 783 TQGTLNSKLYEN-----VEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAI 837
Query: 432 TRARHCLWILGNERTLISSESIWGALVCDAKARQCFF 468
TRA++ L ++GN + L + +W L+ K+++ +
Sbjct: 838 TRAKYGLVLVGNAKVL-ARHDLWHELINHYKSKEMLY 873
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 142/267 (53%), Gaps = 14/267 (5%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMV-ASKISDEAGFGRSLFERLTS 259
+V+DE +Q+ E S +P+ +L+GD QLP + S + E G ++LF+RL
Sbjct: 628 VVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCL 687
Query: 260 LNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINI 319
+ H LL QYR HP+IS N FY+ +++G +S +LP F N+
Sbjct: 688 MGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPT-----LCFYNV 742
Query: 320 IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGS 379
G + +S N+ E + +K++Q L + + IGV++ Y +Q + + +
Sbjct: 743 KGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSM---IGVITLYKSQMYKLCHLLSA 799
Query: 380 -EYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARHCL 438
++ + D TV+V ++D FQG E++III+S VR +GFI +R+NVALTR + L
Sbjct: 800 VDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTR---QVGFIDSEKRMNVALTRGKRHL 856
Query: 439 WILGNERTLISSESIWGALVCDAKARQ 465
I+GN L ++ +WG ++ + R+
Sbjct: 857 LIVGNLACLRKNQ-LWGRVIQHCEGRE 882
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 151/319 (47%), Gaps = 59/319 (18%)
Query: 195 IKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLF 254
IK +++DEA Q E+ + +PL L GI + V +GDE QL S S+ SLF
Sbjct: 811 IKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQL-----SSFSNIPQLETSLF 865
Query: 255 ERLTSLNHSKH--LLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLP----G 308
ER+ S K+ +L+ QYRMHP IS FP + Y ++ DG + K++ P
Sbjct: 866 ERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQKAWPGVQHPLFFYQ 925
Query: 309 TELGPYSFI-----NIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVV 363
+LGP S + +I+G F Y + VE+ +I+IL K + IGV+
Sbjct: 926 CDLGPESRVRSTQRDIVG----FTYENKHECVEIVKIIQILMLDKKVPL-----EEIGVI 976
Query: 364 SPYTAQ----------AVAIRKK---IGSEYENKDGFT---------------------V 389
+PY+AQ V I K + EY+ + F +
Sbjct: 977 TPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGL 1036
Query: 390 KVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLIS 449
V ++D FQG E+ II S VR N IGF+ +R+NVALTRA+H L ++GN+ L
Sbjct: 1037 HVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRK 1096
Query: 450 SESIWGALVCDAKARQCFF 468
+ +W + + ++ F
Sbjct: 1097 GDPLWKDYITYLEEQEVIF 1115
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 141/272 (51%), Gaps = 13/272 (4%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDE+ Q E + P++L +++G+ + V K + +AG +SLFERL L
Sbjct: 615 ILIDESTQATEPKCIGPVELGA--KQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVL 672
Query: 261 NHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINII 320
L VQYRMHP++S FP+ FY + +G + + + F +
Sbjct: 673 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVT 732
Query: 321 GGSEEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKI- 377
G EE S N E + V KI +L KA Q IG+++PY Q + + +
Sbjct: 733 QGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 789
Query: 378 --GSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRAR 435
GS + + V++ S+D FQG E+D II+S VR N IGF++ P+R+NVALTRA+
Sbjct: 790 FSGSLHTKL--YQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAK 847
Query: 436 HCLWILGNERTLISSESIWGALVCDAKARQCF 467
+ + I+GN + L S + +W L+ + K ++
Sbjct: 848 YGVIIVGNPKAL-SKQPLWNNLLNNYKEQKVL 878
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 134/261 (51%), Gaps = 23/261 (8%)
Query: 198 LNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERL 257
+ +V+DE AQ E+ IPL A +L GD QLP S + AG RSL ERL
Sbjct: 368 FDVVVVDECAQALEASCWIPLLKA--PKCILAGDHKQLPPTTVSHKAALAGLSRSLMERL 425
Query: 258 TSLNHSK--HLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPG---TELG 312
+ + +L VQYRMH +I+ + + Y Q+ +V + LPG TE
Sbjct: 426 AEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKD--LPGVADTEET 483
Query: 313 --PYSFINIIGGS----EEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPY 366
P I+ G EE S N EV +V +Q L A V Q I V++PY
Sbjct: 484 SVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGV---QAGDIAVIAPY 540
Query: 367 TAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQR 426
Q +R+ + +++ +++KS+DGFQG E++ +I++ VR N G +GF+++ +R
Sbjct: 541 NLQVDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRR 595
Query: 427 VNVALTRARHCLWILGNERTL 447
+NVA+TRAR + ++ + T+
Sbjct: 596 INVAVTRARRHVAVICDSHTV 616
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 29/261 (11%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL 260
++IDEA+Q E + IPL G+N +L GD QL V SK S+FERL
Sbjct: 386 VIIDEASQALEPQCWIPL--LGMNKVILAGDHMQLSPNVQSKRP-----YISMFERLVKS 438
Query: 261 NHS--KHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKS-YEKHYLPGTEL--GPYS 315
K LN+QYRMH IS FP+ FY ++++ VK + + + TEL P
Sbjct: 439 QGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIY 498
Query: 316 FINIIGGSEE---------FIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPY 366
F + +G +E F S N E +V + L +A + +K I VV+PY
Sbjct: 499 FYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAK---DIAVVTPY 555
Query: 367 TAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQR 426
AQ IR+ + + G V++ S+D QG E++ II S VR N +GF+++ +R
Sbjct: 556 NAQVALIRQLL-----KEKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRR 610
Query: 427 VNVALTRARHCLWILGNERTL 447
+NVA+TR + L ++G+ T+
Sbjct: 611 LNVAITRPKRHLCVIGDSNTV 631
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 140/275 (50%), Gaps = 23/275 (8%)
Query: 184 ASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKI 243
ASS L + + +V+DE AQ E+ IPL A +L GD QLP S
Sbjct: 354 ASSDGPLKLLPENHFDVVVVDECAQALEASCWIPLLKA--PKCILAGDHRQLPPTTISHK 411
Query: 244 SDEAGFGRSLFERLTSLNHSK--HLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSY 301
+ AG RSL ERL + + +L VQYRMH +I+ + + Y Q+ +V
Sbjct: 412 AALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLL 471
Query: 302 EKHYLPG---TELG--PYSFINIIGGS----EEFIYHSCRNMVEVSVVIKILQKLYKAWV 352
+ LPG TE P I+ G +E S N EV +V +Q L A V
Sbjct: 472 KD--LPGVADTEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGV 529
Query: 353 GSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRC 412
+ I V++PY Q +R+ + +++ +++KS+DGFQG E++ +I++ VR
Sbjct: 530 HAG---DIAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRS 581
Query: 413 NAGGSIGFISKPQRVNVALTRARHCLWILGNERTL 447
N G +GF+++ +R+NVA+TRAR + ++ + RT+
Sbjct: 582 NRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV 616
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats.
Identities = 94/312 (30%), Positives = 152/312 (48%), Gaps = 48/312 (15%)
Query: 192 SVEIKPLNFLVIDEAAQLKESESTIPL-QLAGINHAVLIGDECQLPAMVASKISDEAGFG 250
S++I + +++DEA E E+ IPL Q VL+GD QL +V ++ G
Sbjct: 2348 SLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNLGLD 2407
Query: 251 RSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTE 310
RSLFER + H+L+ QYRMH I FP++ FY++++ K+++ P +
Sbjct: 2408 RSLFERY---HEDAHMLDTQYRMHEGICAFPSVAFYKSKL--------KTWQGLRRPPSV 2456
Query: 311 LG-------PYSFINIIG-------GSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQ 356
LG P F ++ G ++E +S N+ EV+ V++I ++L Q
Sbjct: 2457 LGHAGKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVVRITKQLTLGRTVEPQ 2516
Query: 357 KVSIGVVSPYTAQAVAIRKKIGSEYENKDGFT-VKVKSIDGFQGGEEDIIIISTVRCNAG 415
I V++PY AQA I K + ++G V V SI QG E +++STVR A
Sbjct: 2517 --DIAVLTPYNAQASEISKAL-----RREGIAGVAVSSITKSQGSEWRYVLVSTVRTCAK 2569
Query: 416 GS-------------IGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAK 462
+GF+ P +VNVA+TRA+ L ++G + L+ +W +L+ +
Sbjct: 2570 SDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIG-DHLLLRCCPLWRSLLDFCE 2628
Query: 463 ARQCFFNADEDR 474
A+Q A + R
Sbjct: 2629 AQQTLVPAGQVR 2640
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 39/297 (13%)
Query: 176 RASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGI-NHAVLIGDECQ 234
R + +T S + +L V + + ++IDEAAQ+ E E+ PL A VL GD Q
Sbjct: 640 RHRVVVTTTSQARELR-VPVGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDHMQ 698
Query: 235 L-PAM--VASKISDEAGFGRSLF-----ERLTSLNHSKHLLNVQYRMHPSISLFPNLQFY 286
+ P + VA + E LF E S+ + + YR +I F + FY
Sbjct: 699 VTPRLFSVARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRHFY 758
Query: 287 RNQILDG----ANVKSKSYEKHYLPGTELGPYSFINIIGGSE-EFIYHSCRNMVEVSVVI 341
+ G A K + +HY P F ++ G + + S N+ E++ V+
Sbjct: 759 ---VAKGNPIHARGKVPPHPRHY-------PLMFCHVAGSPDRDMSMASWLNLAEIAQVV 808
Query: 342 KILQKLYKAWV---GSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQ 398
+ +Q+ Y W G +++ I VVS + AQ A+R+ E +D V V S +
Sbjct: 809 EKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQ----ELRRRDLGQVSVGSFEILP 863
Query: 399 GGEEDIIIISTVR-CNAGGSIG-----FISKPQRVNVALTRARHCLWILGNERTLIS 449
G + ++++STV C + S G F + + +N LTRA+ L ++G+ L S
Sbjct: 864 GRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALCS 920
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 132/261 (50%), Gaps = 23/261 (8%)
Query: 198 LNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERL 257
+ +V+DE AQ E+ IPL A +L GD QLP S + AG RSL ERL
Sbjct: 368 FDVVVVDECAQALEASCWIPLLKA--PKCILAGDHRQLPPTTVSHRAALAGLSRSLMERL 425
Query: 258 TSLNHSK--HLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPG---TELG 312
+ + +L VQYRMH +I + + Y Q +V + LPG TE
Sbjct: 426 AEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKD--LPGVTDTEET 483
Query: 313 --PYSFINIIGGS----EEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPY 366
P I+ G EE S N EV +V +Q L A V Q I V++PY
Sbjct: 484 RVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGV---QAGDIAVIAPY 540
Query: 367 TAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQR 426
Q +R+ + +++ +++KS+DGFQG E++ ++++ VR N G +GF+++ +R
Sbjct: 541 NLQVDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRR 595
Query: 427 VNVALTRARHCLWILGNERTL 447
+NVA+TRAR + ++ + T+
Sbjct: 596 INVAVTRARRHVAVICDSHTV 616
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 155/325 (47%), Gaps = 49/325 (15%)
Query: 184 ASSSYKLHSVEIKPLNF-----LVIDEAAQLKESESTIPLQLAGINH---AVLIGDECQL 235
SSS +L S+ NF L+IDE +Q E + IPL +A N VL GD QL
Sbjct: 370 GSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPL-IAHQNQFHKLVLAGDNKQL 428
Query: 236 PAMVASKISDEA--GFGRSLFERLTSLNHSKHL---LNVQYRMHPSISLFPNLQFYRNQI 290
P + ++ +LF+R+ + + + LNVQYRM+ I FP+ Y ++
Sbjct: 429 PPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKL 488
Query: 291 LDGANVKSKSYEKHYLPGTELGPY-----SFINII-----------GGSEEFIYHSCRNM 334
L A V ++ LP + P + I +I E I S N
Sbjct: 489 LADATVANRLLID--LPTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNE 546
Query: 335 VEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSI 394
E+++V + ++ L V SIGV+SPY AQ ++K I E + D +++ ++
Sbjct: 547 GEIAIVKEHIENLRSFNVPEN---SIGVISPYNAQVSHLKKLIHDELKLTD---IEISTV 600
Query: 395 DGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTL------- 447
DGFQG E+D+II+S VR N +GF+ + +R+NVA+TR R L ++GN L
Sbjct: 601 DGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKY 660
Query: 448 ISSESIWGALVCDAKARQCFFNADE 472
+ S S W C+ A + N D+
Sbjct: 661 LKSWSEW----CEENADVRYPNIDD 681
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 133/264 (50%), Gaps = 29/264 (10%)
Query: 198 LNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERL 257
+ +VIDE AQ E+ IPL A +L GD QLP S + AG SL ERL
Sbjct: 369 FDVVVIDECAQALEASCWIPLLKA--RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERL 426
Query: 258 TSLNHSK--HLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYL---PGT--- 309
++ L VQYRMH +I + + Y Q+ ++V +H L PG
Sbjct: 427 AEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVA-----RHLLRDLPGVAAT 481
Query: 310 -ELG-PYSFINIIGGS----EEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVV 363
E G P ++ G EE S N EV +V +Q L A V ++ I VV
Sbjct: 482 EETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPAR---DIAVV 538
Query: 364 SPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISK 423
SPY Q +R+ + + +++KS+DGFQG E++ +I+S VR N G +GF+++
Sbjct: 539 SPYNLQVDLLRQSLVHRHPE-----LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAE 593
Query: 424 PQRVNVALTRARHCLWILGNERTL 447
+R+NVA+TRAR + ++ + RT+
Sbjct: 594 DRRINVAVTRARRHVAVICDSRTV 617
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 39/327 (11%)
Query: 148 LRNLWNSLDELNLPCTTSKLLLEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAA 207
++ + N+LDE+ T K++ E + ++ + S L E + +VIDE +
Sbjct: 353 IKRIINNLDEI-----TEKIMNEILAEADVIVATNSMAGSEILKGWE---FDVIVIDEGS 404
Query: 208 QLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTS-LNHSKHL 266
Q E IP+ + G ++ GD QLP V +S+ ++LFERL +
Sbjct: 405 QAMEPSCLIPI-VKG-RKLIMAGDHKQLPPTV---LSENEELKKTLFERLIKKYPEFSSI 459
Query: 267 LNVQYRMHPSISLFPNLQFYRNQILDGANVKS-------KSYEKHYLPGTELG--PYSFI 317
L +QYRM+ I FPN FY N++ +VK+ K E + + P FI
Sbjct: 460 LEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFI 519
Query: 318 NIIG-GSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKK 376
N+ G ++ S N+ E V++I++KL K K+ V++PY AQ +R+
Sbjct: 520 NVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKY------KIPTNVITPYDAQVRYLRRL 573
Query: 377 IGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARH 436
E N D ++V ++DGFQG E + I+IS VR + GF+ +R+NVA+TRA+
Sbjct: 574 F--EEHNID---IEVNTVDGFQGRENEAIVISFVRTK---NFGFLKDLRRLNVAITRAKR 625
Query: 437 CLWILGNERTLISSESIWGALVCDAKA 463
L ++GNE L+ + ++ ++ AK+
Sbjct: 626 KLILIGNE-NLLKQDKVYNEMIKWAKS 651
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 156/325 (48%), Gaps = 36/325 (11%)
Query: 155 LDELNLPCTTSKLLLEDFCFKRASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKES 212
DEL C K L R L ST S+ L++ + +F +++DEA Q E
Sbjct: 500 FDELIFKCPPLKALT------RYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEP 553
Query: 213 ESTIPLQLAGINHAVLI--GDECQLPAMVASKISDEAGFGRSLFERL--------TSLNH 262
E+ I + + V++ GD QL ++ S+ ++ G G+S ERL N+
Sbjct: 554 ENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENY 613
Query: 263 SKHLLNVQYRMHPSISLFPNLQFYRNQILDGA-NVKSKSYEKHYLPGTELGPYSFINIIG 321
L+ YR HP I P+ FY +++ + S ++LP E P F I G
Sbjct: 614 VTKLVK-NYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPNKEF-PMVFYGIQG 671
Query: 322 GSE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSE 380
E E S N +E+S VI+ +++L Q+ IGV++PY Q + I++ +
Sbjct: 672 CDEREGNNPSWFNRIEISKVIETIKRLTAN--DCVQEEDIGVITPYRQQVMKIKEVL--- 726
Query: 381 YENKDGFTVKVKSIDGFQGGEEDIIIISTVRC-------NAGGSIGFISKPQRVNVALTR 433
+ D VKV S++ FQG E+ +IIISTVR + +GF+S P+R NVA+TR
Sbjct: 727 -DRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITR 785
Query: 434 ARHCLWILGNERTLISSESIWGALV 458
A L I+GN +I + W L+
Sbjct: 786 AISLLVIIGNPH-IICKDMNWNKLL 809
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 144/294 (48%), Gaps = 42/294 (14%)
Query: 201 LVIDEAAQLKESESTIPLQLAGINHA-----VLIGDECQLPAMVASKISDEAGFGRSLFE 255
+ +DEA E E I + +AG+ +A VL GD QL ++ S + + G G SL E
Sbjct: 669 IFVDEAGHAVEPE--IVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLE 726
Query: 256 RLTSLNH--------------SKHLLNVQYRMHPSISLFPNLQFYRNQILDGAN-VKSKS 300
RL + N +K L N YR HPSI PN FY N++ A+ + S+
Sbjct: 727 RLMTQNELYQKGDTGFDNRYVTKLLQN--YRSHPSILKVPNELFYDNELKACADEISSRQ 784
Query: 301 Y-EKHYLPGTELGPYSFINIIGGSE-EFIYHSCRNMVEVSVVIKILQKLY----KAWVGS 354
Y +LP P F ++G E E S N E+ ++ L+KL K +
Sbjct: 785 YCTWEHLPKRGF-PVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAK 843
Query: 355 KQKVSIGVVSPYTAQAVAIRK--KIGSEYENKDGFT-VKVKSIDGFQGGEEDIIIISTVR 411
IG+++PY Q IR+ KI E ++ G +KV S++ FQG E +II+STVR
Sbjct: 844 ISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVR 903
Query: 412 CNAGG-------SIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALV 458
+ +IGF+ +R NVA+TRA+ L ++GN ++ ++ IWG +
Sbjct: 904 SSKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNP-IILRTDEIWGRFM 956
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 42/292 (14%)
Query: 203 IDEAAQLKESESTIPLQLAGINHA-----VLIGDECQLPAMVASKISDEAGFGRSLFERL 257
+DEA ESE+ I +AG+ +A VL GD QL ++ S ++ G SL ERL
Sbjct: 676 VDEAGHAVESETII--SVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERL 733
Query: 258 TSLNH--------------SKHLLNVQYRMHPSISLFPNLQFYRNQILDGAN-VKSKSY- 301
+ N SK ++N YR HP I PN FY ++ A+ + S Y
Sbjct: 734 MTQNDLYKRGDVEFDNRYVSKLIMN--YRSHPYILEVPNRLFYDGELKACADEISSNQYC 791
Query: 302 EKHYLPGTELGPYSFINIIGGSE-EFIYHSCRNMVEVSVVIKILQKLY----KAWVGSKQ 356
+LP P F + G E E S N+ E+++++ L+KL K +
Sbjct: 792 MWEHLPSKGF-PVIFHGVPGKDERESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIF 850
Query: 357 KVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTV---KVKSIDGFQGGEEDIIIISTVRC- 412
IG+++PY Q I++ I ++ + +D + KV S++ FQG E +I++STVR
Sbjct: 851 PKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSS 910
Query: 413 ------NAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALV 458
+ +IGF+ +R NVA+TRA+ L ++GN L + ES WG +
Sbjct: 911 VKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDES-WGRFI 961
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 137/299 (45%), Gaps = 34/299 (11%)
Query: 198 LNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERL 257
+F ++DEA+Q+ + PL A + VL+GD QLP +V S + E G SLF+RL
Sbjct: 757 FDFCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRL 814
Query: 258 TSLNHSKHLLNVQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKHYL 306
+ L VQYRM+ I N Y N ++ ++K+ E +
Sbjct: 815 ERNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFR 874
Query: 307 PGTE----------LGPYSFINI--IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGS 354
E P F+N I E N +E +V + + KA
Sbjct: 875 ESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGC-- 932
Query: 355 KQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNA 414
+ IG+++PY Q K I + + + V+V ++D +QG ++ +II+S VR N
Sbjct: 933 -RPSDIGIIAPYRQQL----KMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNI 987
Query: 415 GGSIGFISKP-QRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKARQCFFNADE 472
G +G + K +R+NVALTRA+H L +LG TL + + L+C+ K ++ E
Sbjct: 988 DGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCL-EQLICNLKTENQIYDLPE 1045
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 142/288 (49%), Gaps = 36/288 (12%)
Query: 182 STASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVA 240
+T ++ Y+ +++P ++++EAA++ E+ + L A H +LIGD QL P+
Sbjct: 978 TTGAAKYRQILQQVEP-RIVIVEEAAEVLEAHTIATLSKA-CQHLILIGDHQQLRPSANV 1035
Query: 241 SKISDEAGFGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRN-----QILDGAN 295
++ SLFERL +N LN Q+RM P I+ Y++ +L
Sbjct: 1036 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEQ 1095
Query: 296 VKSKS----YEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLY-KA 350
+K S + +H P E+ +E H +N E V+++ Q L +
Sbjct: 1096 IKGVSSNLFFVEHNFPEQEI------------QEGKSH--QNQHEAHFVVELCQYLLCQE 1141
Query: 351 WVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTV 410
++ S+ I +++ YT Q +RK + K +KV +D +QG E DII++S V
Sbjct: 1142 YLPSQ----ITILTTYTGQLFCLRKLMPV----KTFAGIKVHVVDKYQGEENDIILLSLV 1193
Query: 411 RCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALV 458
R N G +GF+ P R+ VAL+RA+ ++ +GN + +++ +W ++
Sbjct: 1194 RSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQ-MLAKVPLWSRII 1240
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 138/311 (44%), Gaps = 51/311 (16%)
Query: 201 LVIDEAAQLKESESTIPLQL--AGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLT 258
++ DEA Q E E+ +P+ + + VL GD QL ++V S+I+ + GF S ERL
Sbjct: 945 VLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERL- 1003
Query: 259 SLNHSKHLLNVQ-------------------YRMHPSISLFPNLQFYRNQILDGANVKSK 299
L S + ++Q YR PSI + FY ++++ + K
Sbjct: 1004 -LERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKD- 1061
Query: 300 SYEKHYLPGTELGPYSFINIIGGSEEFIY------------HSCRNMVEVSVVIKILQKL 347
S E L S +I F Y S N EV V + L
Sbjct: 1062 SRESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIAL 1121
Query: 348 YKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIII 407
Y+A V + Q IG+++PY Q +R S + D K+ S++ FQG E DII+I
Sbjct: 1122 YRANVTADQ---IGIITPYQKQVKMLR----SMFIGTDVVMPKIGSVEEFQGQERDIILI 1174
Query: 408 STVRC-------NAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCD 460
STVR +A S+GF+ +R+NVA++RAR + I GN L++ + W L+
Sbjct: 1175 STVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPH-LLAVDECWRQLILF 1233
Query: 461 AKARQCFFNAD 471
+F D
Sbjct: 1234 CVKNNAYFGCD 1244
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 133/296 (44%), Gaps = 48/296 (16%)
Query: 201 LVIDEAAQLKESESTIPLQLAGI----------NHAVLIGDECQLPAMVASKISDEAGFG 250
+ IDEA E ES + +AG+ VL GD QL ++ S ++ + G G
Sbjct: 642 IFIDEAGHCMEPESLV--AIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLG 699
Query: 251 RSLFERLTSLNH--------------SKHLLNVQYRMHPSISLFPNLQFYRNQILDGANV 296
SL ERL + N +K L N YR HP+I PN +Y ++ A+V
Sbjct: 700 YSLLERLLTYNSLYKKGPDGYDPQFITKLLRN--YRSHPTILDIPNQLYYEGELQACADV 757
Query: 297 KSKSYEKHYLPGTELG-PYSFINIIGGSE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGS 354
+ + G P F ++G E E S N E + V L KL A
Sbjct: 758 VDRERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYL-KLLLAPSSK 816
Query: 355 KQKV-----SIGVVSPYTAQAVAIR---KKIGSEYENKDGFT-VKVKSIDGFQGGEEDII 405
K K S+GV+SPY Q IR K+ E D +KV S++ FQG E +I
Sbjct: 817 KGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVI 876
Query: 406 IISTVRCNAGG-------SIGFISKPQRVNVALTRARHCLWILGNERTLISSESIW 454
+ISTVR + ++GF+ P+R NVA+TRA+ L I+GN L+ + W
Sbjct: 877 LISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNP-LLLGHDPDW 931
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 129/272 (47%), Gaps = 34/272 (12%)
Query: 196 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFE 255
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 754 KTFDFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 256 RLTSLNHSKHLLNVQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKH 304
RL ++ L VQYRM+ I N Y N +++ N K E
Sbjct: 812 RLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELE 871
Query: 305 YLPGTELGPY-----------SFINI--IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAW 351
+ P+ F+N + E+ N++E +V+ + KA
Sbjct: 872 FYADYSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKA- 930
Query: 352 VGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVR 411
G K IG+++PY Q I + ++ G V+V ++D +QG ++ I+++S VR
Sbjct: 931 -GCKPS-DIGIIAPYRQQLKVISDLLA---QSSVGM-VEVNTVDRYQGRDKSIVVVSFVR 984
Query: 412 CNAGGSIGFISKP-QRVNVALTRARHCLWILG 442
N G++G + K +R+NVA+TRA+H L +LG
Sbjct: 985 SNEDGTLGELLKDWRRLNVAITRAKHKLILLG 1016
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 152/336 (45%), Gaps = 55/336 (16%)
Query: 165 SKLLLEDFCFKRASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQLAG 222
SK LL+ + + +T ++ +L S P F + IDE E ES + +AG
Sbjct: 602 SKKLLKPY-----RILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVV--AIAG 654
Query: 223 I------------NHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSLN----HSKHL 266
+ VL GD QL + S ++ + G G SL ERL N S
Sbjct: 655 LLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEG 714
Query: 267 LNVQ--------YRMHPSISLFPNLQFYRNQI--LDGANVKSKSYEKHY--LPGTELGPY 314
N Q YR H +I PN FY +++ +G+ +++ + LP + P
Sbjct: 715 YNPQFVTKLLWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGV-PI 773
Query: 315 SFINIIGGSE-EFIYHSCRNMVEVSVVIKILQKLYKAW----VGSKQKVSIGVVSPYTAQ 369
F + G E E S N E+ VV++ LQKL ++ + IG++SPY Q
Sbjct: 774 IFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQ 833
Query: 370 AVAIRKKIGSE----YENKDGFTVKVKSIDGFQGGEEDIIIISTVRC-------NAGGSI 418
IR I S+ D +KV S++ FQG E +I+ISTVR + +
Sbjct: 834 VEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRL 893
Query: 419 GFISKPQRVNVALTRARHCLWILGNERTLISSESIW 454
GF+ P+R+NVALTRA+ L ++GN ++S + W
Sbjct: 894 GFLKNPKRLNVALTRAKALLIVVGNA-AVLSKDPHW 928
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 161/360 (44%), Gaps = 60/360 (16%)
Query: 201 LVIDEAAQLKESESTIPLQLAGI----------NHAVLIGDECQLPAMVASKISDEAGFG 250
+ IDEA E ES + +AG+ VL GD QL ++ S ++ + G G
Sbjct: 643 IFIDEAGHCMEPESLV--AIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLG 700
Query: 251 RSLFERLTSLNH--------------SKHLLNVQYRMHPSISLFPNLQFYRNQILDGANV 296
SL ERL + N +K L N YR HP+I PN +Y ++ A+V
Sbjct: 701 YSLLERLLAYNSLYKKGPNGYDPQFITKLLRN--YRSHPTILDIPNQLYYDGELQACADV 758
Query: 297 KSKSYEKHYLPGTELG-PYSFINIIGGSE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGS 354
+ + + G P F ++G E E S N E + V L++L A
Sbjct: 759 VDRERFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLL-APSSK 817
Query: 355 KQKV-----SIGVVSPYTAQAVAIR---KKIGSEYENKDGFT-VKVKSIDGFQGGEEDII 405
K K ++GV+SPY Q IR K+ E D +KV S++ FQG E +I
Sbjct: 818 KGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVI 877
Query: 406 IISTVRCNAGG-------SIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALV 458
+ISTVR + ++GF+ P+R NVA+TRA+ L ++GN L+ + W +
Sbjct: 878 LISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNP-LLLGHDPDWKTFL 936
Query: 459 --C--DAKARQCFFNADEDRNVAKARLDIGKELVE-IGAESLTSTNQRGKTTLCYDKDGE 513
C + C F A D L G++L++ + S +++ R L +++GE
Sbjct: 937 EFCKENGGYTGCPFPAKLD-------LQQGQDLLQGLSKLSPSTSGPRRHQNLPQEREGE 989
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 151/345 (43%), Gaps = 58/345 (16%)
Query: 161 PCTTSKLLLEDFCF------KRASLFFSTASSSYKLHSVE--IKPLNFLVIDEAAQLKES 212
PC DF F + + +T ++ +L S + I + IDEA E
Sbjct: 594 PCCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEP 653
Query: 213 ESTIPLQLAGI----------NHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSLNH 262
ES + +AG+ VL GD QL ++ ++ + G G SL ERL + N
Sbjct: 654 ESLV--AIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNA 711
Query: 263 --------------SKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY--L 306
+K L N YR HP+I PN +Y ++ A+V + + L
Sbjct: 712 LYKKGPDGYNPQFITKLLRN--YRSHPTILDVPNRLYYDGELQACADVVDRERFCRWEGL 769
Query: 307 PGTELGPYSFINIIGGSE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKV-----SI 360
P + P F ++G E E S N E + V L++L A K K S+
Sbjct: 770 PRQDF-PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLL-APSSKKGKARLSPRSV 827
Query: 361 GVVSPYTAQAVAIR---KKIGSEYENKDGFT-VKVKSIDGFQGGEEDIIIISTVRCNAGG 416
GV+SPY Q IR K+ + D +KV S++ FQG E +I+ISTVR +
Sbjct: 828 GVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSF 887
Query: 417 -------SIGFISKPQRVNVALTRARHCLWILGNERTLISSESIW 454
++GF+ P+R NVA+TRA+ L ++GN L+ + W
Sbjct: 888 VQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNP-LLLGHDPDW 931
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 140/315 (44%), Gaps = 40/315 (12%)
Query: 176 RASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQLAG--INHAVLIGD 231
R + +T SSS + + ++ +F + +DEA Q E E IPL L VL GD
Sbjct: 856 RFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGD 915
Query: 232 ECQLPAMVASKISDEAGFGRSLFERLTSLN--------------HSKHL---LNVQYRMH 274
QL ++ S+++ G S ERL S H+ L L YR H
Sbjct: 916 PMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSH 975
Query: 275 PSISLFPNLQFYRNQI---LDGANVKSK-SYEKHYLPGTELGPYSFINIIGG-SEEFIYH 329
++ + P+ FY ++ D V S +EK LP P F + G + E
Sbjct: 976 EALLMLPSRLFYHRELEVCADPTVVTSLLGWEK--LPKKGF-PLIFHGVRGSEAREGKSP 1032
Query: 330 SCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTV 389
S N E V++ L + IGV++PY Q IR + N D +
Sbjct: 1033 SWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILL----RNVDLMDI 1088
Query: 390 KVKSIDGFQGGEEDIIIISTVRCNAGG------SIGFISKPQRVNVALTRARHCLWILGN 443
KV S++ FQG E +IIISTVR N +GF+S +R NVA+TR + L +LGN
Sbjct: 1089 KVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGN 1148
Query: 444 ERTLISSESIWGALV 458
L+ + +GAL+
Sbjct: 1149 PHVLV-RDPCFGALL 1162
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 44/282 (15%)
Query: 196 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFE 255
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 755 KTFDFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFK 812
Query: 256 RLTSLNHSKHLLNVQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSY--- 301
RL + L VQYRM+ I N Y N +L N+K
Sbjct: 813 RLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQ 872
Query: 302 ------EKHYLPGT--ELGPYSFINI--IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAW 351
+ +L G P F+N + E+ N+ E +++ + KA
Sbjct: 873 LYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAG 932
Query: 352 VGSKQKVSIGVVSPYTAQAVAI-----RKKIGSEYENKDGFTVKVKSIDGFQGGEEDIII 406
IGV++PY Q I R +G V+V ++D +QG ++ +I+
Sbjct: 933 CSPSD---IGVIAPYRQQLRIISDLLARSSVG---------MVEVNTVDKYQGRDKSLIL 980
Query: 407 ISTVRCNAGGSIGFISKP-QRVNVALTRARHCLWILGNERTL 447
+S VR N G++G + K +R+NVALTRA+H L +LG+ +L
Sbjct: 981 VSFVRSNEDGTLGELLKDWRRLNVALTRAKHKLILLGSVSSL 1022
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 42/280 (15%)
Query: 196 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFE 255
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 754 KTFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFK 811
Query: 256 RLTSLNHSKHLLNVQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKH 304
RL + L +QYRM+ I N Y N ++ N+K E +
Sbjct: 812 RLERNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFY 871
Query: 305 -------YLPGT--ELGPYSFINI--IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVG 353
+L G P F+N + E+ N+ E +++ + KA
Sbjct: 872 ADYSDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCS 931
Query: 354 SKQKVSIGVVSPYTAQAVAI-----RKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIIS 408
IG+++PY Q I R +G V+V ++D +QG ++ +I++S
Sbjct: 932 PS---DIGIIAPYRQQLRTITDLLARSSVG---------MVEVNTVDKYQGRDKSLILVS 979
Query: 409 TVRCNAGGSIGFISKP-QRVNVALTRARHCLWILGNERTL 447
VR N G++G + K +R+NVA+TRA+H L +LG+ +L
Sbjct: 980 FVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSL 1019
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 142/288 (49%), Gaps = 36/288 (12%)
Query: 182 STASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVA 240
+T ++ Y+ +++P ++++EAA++ E+ + L A H +LIGD QL P+
Sbjct: 985 TTGAAKYRQILQKVEP-RIVIVEEAAEVLEAHTIATLSKA-CQHLILIGDHQQLRPSANV 1042
Query: 241 SKISDEAGFGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRN-----QILDGAN 295
++ SLFERL +N LN Q+RM P I+ Y++ +L
Sbjct: 1043 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKYEK 1102
Query: 296 VKSKS----YEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQK-LYKA 350
+K S + +H P E+ +E H +N E V+++ + L +
Sbjct: 1103 IKGVSSNLFFVEHNFPEQEI------------QEGKSH--QNQHEAHFVVELCKYFLCQE 1148
Query: 351 WVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTV 410
++ S+ I +++ YT Q +RK + + K V+V +D +QG E DII++S V
Sbjct: 1149 YLPSQ----ITILTTYTGQLFCLRKLMPA----KTFAGVRVHVVDKYQGEENDIILLSLV 1200
Query: 411 RCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALV 458
R N G +GF+ R+ VAL+RA+ ++ +GN + +++ +W ++
Sbjct: 1201 RSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQ-MLAKVPLWSKII 1247
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 123/261 (47%), Gaps = 27/261 (10%)
Query: 203 IDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVASKI-SDEAGFGRSLFERLTSL 260
I+EAA + E IP + VLIGD QL P + D S+FERL
Sbjct: 710 IEEAADVLEG-PIIPAVFPSLEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVEN 768
Query: 261 NHSKHLLNVQYRMHPSI-----SLFPNLQFYRNQILDGANVKSKSYEKHY--LPGTELGP 313
+ L +Q RMHP I S++ +L Y K++ +PG
Sbjct: 769 DMEYTRLTMQRRMHPQIRRLVSSVYEDLSDY-------------EITKYWPSIPGMGEIR 815
Query: 314 YSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAI 373
F+ + + S N+ E ++++ L V ++ I ++ Y AQ I
Sbjct: 816 RFFLTHSRIEDNDGFASKINLFEAQMLVQFAVYLINNGVEPQK---ITCLTFYAAQKDLI 872
Query: 374 RKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTR 433
+++ SE N++ +KV ++DG+QG E D++++S VR N +GF+S P RV V+L+R
Sbjct: 873 -ERLLSESLNREKHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSR 931
Query: 434 ARHCLWILGNERTLISSESIW 454
AR L+I GN + + S +W
Sbjct: 932 ARRGLFIFGNAQLVAESNPLW 952
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 35/272 (12%)
Query: 196 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFE 255
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 754 KIFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 256 RLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSY-------------- 301
RL + L VQYRM+ I N Y ++ G++ + +
Sbjct: 812 RLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELE 871
Query: 302 ------EKHYLPGT--ELGPYSFINI--IGGSEEFIYHSCRNMVEVSVVIKILQKLYKAW 351
+ +L G P F+N + E+ N+ E +++ + KA
Sbjct: 872 FYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAG 931
Query: 352 VGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVR 411
IG+++PY Q KI ++ + V+V ++D +QG ++ I+++S VR
Sbjct: 932 CSPS---DIGIIAPYRQQL-----KIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVR 983
Query: 412 CNAGGSIGFISKP-QRVNVALTRARHCLWILG 442
N G++G + K +R+NVA+TRA+H L +LG
Sbjct: 984 SNKDGTVGELLKDWRRLNVAITRAKHKLILLG 1015
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 148/323 (45%), Gaps = 53/323 (16%)
Query: 176 RASLF---FSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQL-AGIN-HAVL 228
RAS F +T SS+ + + ++ F + +DEA Q E E IPL L + IN VL
Sbjct: 855 RASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVL 914
Query: 229 IGDECQLPAMVASKISDEAGFGRSLFERLTS-------------------LNHSKHLLNV 269
GD QL ++ S+++ G S+ ERL S L +K + N
Sbjct: 915 AGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKN- 973
Query: 270 QYRMHPSISLFPNLQFYRNQILDGANVKSKS----YEKHYLPGTELGPYSFINIIGG--- 322
YR H ++ P+ FY ++ A+ K + +EK LP P F + G
Sbjct: 974 -YRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEK--LPRKGF-PLIFHGVRGNEAR 1029
Query: 323 -SEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEY 381
+ S V+V +L + + V SK IGV++PY Q +KI
Sbjct: 1030 EGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKD---IGVITPYRKQV----EKIKILL 1082
Query: 382 ENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGS------IGFISKPQRVNVALTRAR 435
N D +KV S++ FQG E +I+ISTVR N +GF+S +R NVA+TR +
Sbjct: 1083 RNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK 1142
Query: 436 HCLWILGNERTLISSESIWGALV 458
L ILGN L+ + +GAL+
Sbjct: 1143 ALLIILGNPHVLV-RDPCFGALL 1164
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 131/275 (47%), Gaps = 21/275 (7%)
Query: 196 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFE 255
K +F ++DEA+Q+ + PL + VL+GD QLP +V + + + G SLF+
Sbjct: 723 KQFDFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGMSESLFK 780
Query: 256 RLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYS 315
RL ++ L VQYRM+ I N Y ++ G+ S + LP
Sbjct: 781 RLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSNATAN--LP-------- 830
Query: 316 FINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRK 375
N+ EF S + EV K + L G + IG++SPY Q I
Sbjct: 831 --NLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPS-DIGIISPYRHQLKVITD 887
Query: 376 KIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKP-QRVNVALTRA 434
+ EN+ V+V +ID +QG ++ III+S VR + ++G + K +R+NVA+TRA
Sbjct: 888 LMARLKENR----VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRA 943
Query: 435 RHCLWILGNERTLISSESIWGALVCDAKARQCFFN 469
+H L ++G +L + L+C ++ FN
Sbjct: 944 KHKLIMVGCVPSLRRYPPL-EKLLCHLQSEAMIFN 977
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 49/321 (15%)
Query: 168 LLEDFCFKRASLFFSTASSSYKLHSVEI---------------KPLNFLVIDEAAQLKES 212
L+++FC + F AS + +I + ++ +IDEA+Q+
Sbjct: 1014 LVKEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLP 1073
Query: 213 ESTIPLQLAGINHAVLIGDECQLPAMVA-SKISDEAGFGRSLFERLTSLNHSKHLLNVQY 271
PLQLA VL+GD QLP +V S+ S + + L +QY
Sbjct: 1074 ICLGPLQLA--EKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQY 1131
Query: 272 RMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELG---PYS-----FIN-IIGG 322
RM+ I+ + Y ++ G+ K+ S +K LP L P S ++N +I
Sbjct: 1132 RMNEDINSLSSELIYGGNLVCGS--KTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINP 1189
Query: 323 SEEFIYHSCRNMVEV-SVVIKILQKLYKAWV-----------GSKQKVSIGVVSPYTAQA 370
S I+ + +++ V S IL+ +A++ G KQ SIG++S Y +Q
Sbjct: 1190 SHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQS-SIGIISIYKSQV 1248
Query: 371 VAIRKKIGSEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSIG-FISKPQRVNV 429
+ K + S E +++ ++D +QG ++DII+IS VR N+ +G + R+NV
Sbjct: 1249 ELLSKNLKSFTE------IEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNV 1302
Query: 430 ALTRARHCLWILGNERTLISS 450
AL+RA+ + G+ TL SS
Sbjct: 1303 ALSRAKVKCIMFGSLSTLSSS 1323
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 141/307 (45%), Gaps = 45/307 (14%)
Query: 175 KRASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQLA-GINHAVLIGD 231
+R + T S+S L ++++P F +++DEAAQ E E+ +PL LA VL GD
Sbjct: 756 ERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAGD 815
Query: 232 ECQLPAMVASKISDEAGFGRSLFERLTSLNHSKH----LLNVQYRMHPSISLFPNLQFYR 287
QL V S+ + E SL +RL S++ LL YR H +I + + FY
Sbjct: 816 HMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYE 875
Query: 288 NQILDGANVKSKSYEKHYLPGTELGPYSFINIIGGS-EEFIYHSCRNMVEVSVVIKILQK 346
+++ A+ K ++ Y P +F G +E + N EV +++ +++
Sbjct: 876 GKLM--ASGKQPPHKDFY-------PLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEE 926
Query: 347 LYKAWV---GSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGEED 403
+ K W G ++ SIGVVSPY Q IR +E K V V+ + QG +
Sbjct: 927 MRKKWPVSWGKLEEGSIGVVSPYADQVFRIR----AELRKKRMSEVSVERVLNVQGKQFR 982
Query: 404 IIIISTVR----CNAGGSI-----------------GFISKPQRVNVALTRARHCLWILG 442
++ +STVR C + GF+S + +N A+TRA+ + ++G
Sbjct: 983 VLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVG 1042
Query: 443 NERTLIS 449
+ L S
Sbjct: 1043 DPIALCS 1049
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 63/351 (17%)
Query: 190 LHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGF 249
L ++ K +++++DEA+Q+ + PL+ N +++GD QLP +V + + G
Sbjct: 1172 LFTLNEKDFDYVILDEASQISMPVALGPLRYG--NRFIMVGDHYQLPPLVKNDAARLGGL 1229
Query: 250 GRSLFERLTSLNHSKHL--LNVQYRMHPSISLFPNLQFYRNQILDGAN-VKSKSYEKHYL 306
SLF+ H + + L +QYRM I N Y N++ G N V ++S E L
Sbjct: 1230 EESLFKTFCE-KHPESVAELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLE---L 1285
Query: 307 PGTE-LGPYSFINIIGGSEEFI--------------YHSCRNMVEVSVVIKI-------- 343
P E L Y N S++++ Y +C +++E S I
Sbjct: 1286 PMPEALSRYR--NESANSKQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNITNHGEAEL 1343
Query: 344 -LQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFT-VKVKSIDGFQGGE 401
LQ + + IGV++ Y AQ ++K NK+ + +++ + D FQG +
Sbjct: 1344 TLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIF-----NKNVYDGLEILTADQFQGRD 1398
Query: 402 EDIIIISTVRCNA---GGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESI----- 453
+ IIIS VR N+ GG++ + + +RVNVA+TRA+ L I+G++ T+ S I
Sbjct: 1399 KKCIIISMVRRNSQLNGGAL--LKELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIKSFVN 1456
Query: 454 ------WGALVC-DAKARQCFFNADEDRNVAKARLDIGKELVEIGAESLTS 497
W +C DA + F D + +AR GK GA+ +TS
Sbjct: 1457 LLEERNWVYTMCKDALYKYKF--PDRSNAIDEARKGCGK---RTGAKPITS 1502
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 141/312 (45%), Gaps = 29/312 (9%)
Query: 172 FCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAV--LI 229
F + L TA S+ L ++ ++ + + IDEA+QL +E T+ L N+A LI
Sbjct: 1178 FMIYKPDLVMVTADSAKGLLNI-LRDVCAVQIDEASQL--AECTLLGLLKSFNNASFGLI 1234
Query: 230 GDECQLPAM----VASKISDEAGFGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQF 285
GD QLP + K+ D G G ++ + L YR HP + + F
Sbjct: 1235 GDIHQLPPYCEEGLEGKLKD-FGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLSELF 1293
Query: 286 YRNQILDGANVKSKS----YEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVI 341
Y ++ G + ++S + P + P F+N G S + + S N E S+V
Sbjct: 1294 YDGALVSGVSELARSDFMTKRDDFWPNPKF-PMMFVNNTGASTK-MGTSTSNSSEKSIVG 1351
Query: 342 KILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQGGE 401
+I+Q L IGV+S Y+AQ + E+ G VK ++D FQG E
Sbjct: 1352 EIVQNLINDPRNPVNPSDIGVISFYSAQTSILT-------EHLRGSGVKCGTVDAFQGSE 1404
Query: 402 EDIIIISTVRCNAGGSIG-FISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCD 460
++III+ C+ I F+ R+NVA++RA+ I+G+ L + + W +V
Sbjct: 1405 KEIIIM----CSTNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRA-NYWSTIVNK 1459
Query: 461 AKARQCFFNADE 472
+ NA++
Sbjct: 1460 IEQNGNLVNAND 1471
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,111,316
Number of Sequences: 539616
Number of extensions: 7926344
Number of successful extensions: 21705
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 21477
Number of HSP's gapped (non-prelim): 118
length of query: 549
length of database: 191,569,459
effective HSP length: 123
effective length of query: 426
effective length of database: 125,196,691
effective search space: 53333790366
effective search space used: 53333790366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)