Query 008899
Match_columns 549
No_of_seqs 347 out of 1893
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 9E-58 3.1E-62 514.1 22.4 293 169-472 335-639 (646)
2 2gk6_A Regulator of nonsense t 100.0 3.5E-52 1.2E-56 466.8 17.0 296 169-471 312-612 (624)
3 2wjy_A Regulator of nonsense t 100.0 2.9E-51 9.9E-56 469.3 19.5 297 168-471 487-788 (800)
4 2xzl_A ATP-dependent helicase 100.0 2.2E-50 7.7E-55 462.3 19.1 295 169-471 491-790 (802)
5 3e1s_A Exodeoxyribonuclease V, 99.7 3.3E-18 1.1E-22 189.5 9.1 201 196-448 278-545 (574)
6 3vkw_A Replicase large subunit 99.6 1.5E-15 5.2E-20 162.0 12.1 200 197-463 234-435 (446)
7 3upu_A ATP-dependent DNA helic 99.6 2.3E-15 7.9E-20 162.4 8.0 84 196-285 127-211 (459)
8 1w36_D RECD, exodeoxyribonucle 99.6 2.5E-15 8.5E-20 167.7 8.2 87 196-282 261-372 (608)
9 3lfu_A DNA helicase II; SF1 he 99.5 2.5E-14 8.4E-19 159.9 12.8 149 197-374 213-364 (647)
10 3dmn_A Putative DNA helicase; 99.4 2E-13 6.8E-18 128.4 9.1 144 268-444 2-154 (174)
11 1pjr_A PCRA; DNA repair, DNA r 99.4 9.1E-13 3.1E-17 149.9 11.0 152 196-376 215-370 (724)
12 1uaa_A REP helicase, protein ( 99.3 2.1E-12 7.1E-17 145.6 10.9 143 196-368 206-353 (673)
13 3u4q_A ATP-dependent helicase/ 99.0 3.5E-10 1.2E-14 135.6 10.5 84 197-287 400-494 (1232)
14 1w36_B RECB, exodeoxyribonucle 99.0 7.5E-10 2.6E-14 132.2 10.3 83 197-286 377-462 (1180)
15 3u4q_B ATP-dependent helicase/ 96.6 0.0036 1.2E-07 74.7 8.9 153 199-379 203-365 (1166)
16 3u4q_B ATP-dependent helicase/ 89.9 0.24 8.1E-06 59.0 5.2 59 386-444 585-671 (1166)
17 1w36_C RECC, exodeoxyribonucle 89.5 0.21 7.1E-06 59.3 4.2 79 385-463 655-757 (1122)
18 2l8b_A Protein TRAI, DNA helic 80.7 0.98 3.3E-05 42.2 3.2 41 196-236 120-162 (189)
19 2fz4_A DNA repair protein RAD2 79.4 1.6 5.6E-05 41.7 4.6 38 176-213 171-208 (237)
20 2gxq_A Heat resistant RNA depe 78.4 2.3 7.9E-05 38.9 5.1 42 169-210 113-157 (207)
21 1rif_A DAR protein, DNA helica 76.8 1.5 5.2E-05 42.8 3.5 40 174-213 202-241 (282)
22 3b6e_A Interferon-induced heli 69.0 1.5 5.2E-05 40.2 1.3 40 173-212 129-177 (216)
23 2fwr_A DNA repair protein RAD2 64.8 3.6 0.00012 43.1 3.3 39 176-214 171-209 (472)
24 1vec_A ATP-dependent RNA helic 62.9 9.6 0.00033 34.6 5.5 41 171-211 117-160 (206)
25 3iuy_A Probable ATP-dependent 62.1 4.1 0.00014 38.0 2.9 40 171-210 138-180 (228)
26 2zpa_A Uncharacterized protein 61.9 6.1 0.00021 44.1 4.5 77 196-285 254-334 (671)
27 1z63_A Helicase of the SNF2/RA 61.6 2.5 8.6E-05 44.7 1.4 61 174-234 126-189 (500)
28 3llm_A ATP-dependent RNA helic 61.4 3.2 0.00011 39.3 2.0 35 175-209 154-188 (235)
29 3ber_A Probable ATP-dependent 60.3 8.9 0.00031 36.6 5.0 42 170-211 155-200 (249)
30 2oca_A DAR protein, ATP-depend 60.0 5.5 0.00019 42.1 3.7 43 173-215 201-243 (510)
31 1qde_A EIF4A, translation init 59.1 4.5 0.00015 37.5 2.5 38 173-210 128-168 (224)
32 1z3i_X Similar to RAD54-like; 57.2 6.4 0.00022 43.5 3.8 60 176-235 170-233 (644)
33 3fe2_A Probable ATP-dependent 56.9 11 0.00037 35.6 4.9 44 167-210 143-189 (242)
34 3h1t_A Type I site-specific re 56.3 12 0.00039 40.6 5.6 39 174-212 272-317 (590)
35 1wrb_A DJVLGB; RNA helicase, D 56.3 7.1 0.00024 37.0 3.5 41 170-210 144-187 (253)
36 4a2p_A RIG-I, retinoic acid in 55.6 8.4 0.00029 40.7 4.3 42 171-212 100-145 (556)
37 2oxc_A Probable ATP-dependent 54.7 4.7 0.00016 37.8 1.8 39 171-209 137-178 (230)
38 3ly5_A ATP-dependent RNA helic 54.1 12 0.00041 36.0 4.7 44 167-210 167-214 (262)
39 1wp9_A ATP-dependent RNA helic 53.9 5.1 0.00018 41.0 2.1 40 172-211 97-139 (494)
40 1t6n_A Probable ATP-dependent 52.7 10 0.00035 34.9 3.9 37 175-211 133-172 (220)
41 2i4i_A ATP-dependent RNA helic 52.7 16 0.00056 36.8 5.7 42 169-210 144-188 (417)
42 3oiy_A Reverse gyrase helicase 51.4 11 0.00039 38.4 4.3 38 171-208 111-150 (414)
43 2pl3_A Probable ATP-dependent 51.1 6.9 0.00023 36.7 2.4 38 173-210 143-184 (236)
44 3eiq_A Eukaryotic initiation f 50.5 21 0.00072 35.9 6.1 43 168-210 151-196 (414)
45 1q0u_A Bstdead; DEAD protein, 47.9 5.8 0.0002 36.8 1.3 36 175-210 125-163 (219)
46 1hv8_A Putative ATP-dependent 47.6 9.3 0.00032 37.7 2.8 38 174-211 121-161 (367)
47 3tbk_A RIG-I helicase domain; 47.2 7.3 0.00025 41.1 2.0 42 171-212 97-142 (555)
48 3bor_A Human initiation factor 46.6 9 0.00031 36.1 2.4 35 176-210 149-186 (237)
49 3dkp_A Probable ATP-dependent 46.5 7.6 0.00026 36.6 1.9 38 174-211 147-189 (245)
50 1s2m_A Putative ATP-dependent 45.9 25 0.00085 35.3 5.8 42 172-213 135-179 (400)
51 3mwy_W Chromo domain-containin 44.2 5.9 0.0002 45.0 0.8 61 175-235 344-408 (800)
52 2z0m_A 337AA long hypothetical 43.9 9.8 0.00033 37.1 2.3 39 173-211 102-143 (337)
53 2db3_A ATP-dependent RNA helic 43.5 31 0.001 35.7 6.2 43 169-211 172-217 (434)
54 3fmo_B ATP-dependent RNA helic 42.5 5.1 0.00017 39.7 -0.1 37 174-210 208-248 (300)
55 3pey_A ATP-dependent RNA helic 42.5 11 0.00038 37.6 2.5 37 175-211 120-159 (395)
56 1fuu_A Yeast initiation factor 41.4 11 0.00038 37.6 2.3 37 174-210 136-175 (394)
57 1xti_A Probable ATP-dependent 41.0 28 0.00094 34.7 5.2 37 175-211 127-166 (391)
58 2j9r_A Thymidine kinase; TK1, 40.3 16 0.00055 34.7 3.1 35 197-231 101-136 (214)
59 1xx6_A Thymidine kinase; NESG, 39.2 19 0.00064 33.4 3.3 34 197-231 81-116 (191)
60 2ykg_A Probable ATP-dependent 39.1 11 0.00036 41.6 1.8 40 173-212 108-151 (696)
61 4gl2_A Interferon-induced heli 38.9 11 0.00038 41.4 1.9 39 172-210 102-149 (699)
62 2j0s_A ATP-dependent RNA helic 38.3 19 0.00066 36.3 3.5 41 171-211 150-193 (410)
63 3o8b_A HCV NS3 protease/helica 37.7 20 0.00067 39.9 3.7 37 174-210 295-331 (666)
64 2orv_A Thymidine kinase; TP4A 37.2 21 0.00071 34.4 3.3 36 196-231 89-124 (234)
65 3fht_A ATP-dependent RNA helic 37.1 8.3 0.00029 38.9 0.5 36 174-209 141-180 (412)
66 1g5t_A COB(I)alamin adenosyltr 35.6 30 0.001 32.3 4.1 37 196-232 119-162 (196)
67 4a2q_A RIG-I, retinoic acid in 35.3 17 0.00059 41.0 2.8 42 171-212 341-386 (797)
68 1w4r_A Thymidine kinase; type 35.1 23 0.00079 33.1 3.2 33 197-230 91-124 (195)
69 2b8t_A Thymidine kinase; deoxy 35.0 24 0.00084 33.5 3.4 35 196-231 88-124 (223)
70 3fho_A ATP-dependent RNA helic 32.4 18 0.0006 38.5 2.1 38 174-211 233-273 (508)
71 3vkw_A Replicase large subunit 32.0 19 0.00065 38.1 2.2 80 359-449 186-274 (446)
72 2orw_A Thymidine kinase; TMTK, 30.5 24 0.00082 32.1 2.5 35 196-231 75-111 (184)
73 3crv_A XPD/RAD3 related DNA he 29.5 18 0.00061 39.0 1.5 42 170-211 142-187 (551)
74 3dmq_A RNA polymerase-associat 29.2 33 0.0011 39.7 3.9 62 174-235 246-319 (968)
75 1gm5_A RECG; helicase, replica 28.6 63 0.0022 36.5 5.9 34 175-210 470-503 (780)
76 3i5x_A ATP-dependent RNA helic 27.9 24 0.00084 37.5 2.3 37 174-210 199-239 (563)
77 1uaa_A REP helicase, protein ( 27.3 48 0.0017 36.4 4.7 58 339-398 31-88 (673)
78 3fmp_B ATP-dependent RNA helic 27.3 14 0.00047 38.6 0.2 36 175-210 209-248 (479)
79 4a2w_A RIG-I, retinoic acid in 26.1 19 0.00065 41.6 1.1 40 173-212 343-386 (936)
80 3sqw_A ATP-dependent RNA helic 25.2 29 0.001 37.3 2.3 37 174-210 148-188 (579)
81 2eyq_A TRCF, transcription-rep 23.1 83 0.0029 37.2 5.8 37 175-213 705-741 (1151)
82 4ddu_A Reverse gyrase; topoiso 22.9 31 0.001 40.7 2.0 39 169-207 166-206 (1104)
83 3e2i_A Thymidine kinase; Zn-bi 22.9 88 0.003 29.7 4.9 34 196-230 100-135 (219)
84 2zj8_A DNA helicase, putative 22.1 25 0.00087 39.0 1.1 37 174-210 112-151 (720)
85 2p6r_A Afuhel308 helicase; pro 21.4 30 0.001 38.3 1.4 37 174-210 112-151 (702)
86 3lkz_A Non-structural protein 21.0 3.5E+02 0.012 27.0 8.9 86 313-413 162-249 (321)
87 2va8_A SSO2462, SKI2-type heli 20.8 24 0.00081 39.1 0.5 37 174-210 119-158 (715)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=9e-58 Score=514.13 Aligned_cols=293 Identities=30% Similarity=0.356 Sum_probs=248.9
Q ss_pred HHHHHhcCCcEEEEccccchhh---cccCCCCCCEEEEEcCCCCChhHHhHhhhhcCCCeEEEEcCCCCCCccccccccc
Q 008899 169 LEDFCFKRASLFFSTASSSYKL---HSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISD 245 (549)
Q Consensus 169 i~~~~l~~a~vI~~T~~sa~~l---~~~~~~~fd~VIVDEAsq~~e~e~lipL~l~~~~~vILvGD~~QLpPiv~s~~~~ 245 (549)
.....+..+++|++|+++++.. .......||+||||||+|++|+++++|+. +++++||||||+||||++.+..+.
T Consensus 335 ~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~--~~~~~ILVGD~~QLpP~v~~~~a~ 412 (646)
T 4b3f_X 335 AMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLL--KARKCILAGDHKQLPPTTVSHKAA 412 (646)
T ss_dssp HHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG--GSSEEEEEECTTSCCCCCSCHHHH
T ss_pred HHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhcc--ccceEEEcCCccccCceecchhhh
Confidence 3445688999999999988752 22345689999999999999999999986 569999999999999999999999
Q ss_pred cccCcccHHHHHHhcC--CCcccceeccccCccccccCcccccccccccCccccccccccc---CCCCCCCCCeEEEEcC
Q 008899 246 EAGFGRSLFERLTSLN--HSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKH---YLPGTELGPYSFINII 320 (549)
Q Consensus 246 ~~~~~~SLfeRl~~~~--~~~~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~---~l~~~~~~~~~fidv~ 320 (549)
..|++.|+|+|+.... .+.++|++||||||.|+.|+|..||+|+|.+++++..+..... ........|+.|+|+.
T Consensus 413 ~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~ 492 (646)
T 4b3f_X 413 LAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTA 492 (646)
T ss_dssp HTTTTCCHHHHHHHHHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECT
T ss_pred hccccchHHHHHHHhcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecC
Confidence 9999999999998753 4456899999999999999999999999999888765533211 1112234589999996
Q ss_pred CCc----ccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEccchHHHHHHHHHHhhhhcCCCCCeEEEecccC
Q 008899 321 GGS----EEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDG 396 (549)
Q Consensus 321 ~g~----e~~~~~S~~N~~Ea~~V~~lv~~L~~~~~~~~~~~sIgIITPY~aQ~~~I~~~L~~~~~~~~~~~v~V~TVd~ 396 (549)
+.. ++..+.|+.|..||..|+.++..|++.+... .+|||||||++|+.+|++.|.+. ...++|+|||+
T Consensus 493 g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~gv~~---~dIgVItpYraQ~~~l~~~l~~~-----~~~i~v~TVd~ 564 (646)
T 4b3f_X 493 GCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPA---RDIAVVSPYNLQVDLLRQSLVHR-----HPELEIKSVDG 564 (646)
T ss_dssp TSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHTCCG---GGEEEEESCHHHHHHHHHHHTTT-----CTTCEEEEGGG
T ss_pred CCccccccccCCccccCHHHHHHHHHHHHHHHhcCCCc---CcEEEECCCHHHHHHHHHHHHHh-----CCCCEECChhh
Confidence 542 2226789999999999999999999887653 48999999999999999999764 23689999999
Q ss_pred CCCccccEEEEEccccCCCCCcccCCCCCcceeeccccccceEEEeehhhhhccchHHHHHHHHHHhCCceecCCc
Q 008899 397 FQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKARQCFFNADE 472 (549)
Q Consensus 397 fQG~E~DiVIlS~vrs~~~~~~GFl~d~~RlNVAlTRAR~~LiIiGn~~tL~~~~~~w~~li~~~~~~g~~~~~~~ 472 (549)
|||+|+|+||+|+||+|..+.+||+.|++|+|||+||||++||||||..+|.+ ++.|++|+++++++|+++.+.+
T Consensus 565 fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~-~~~~~~li~~~~~~g~~~~~~e 639 (646)
T 4b3f_X 565 FQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNN-HAFLKTLVEYFTQHGEVRTAFE 639 (646)
T ss_dssp GTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTT-SHHHHHHHHHHHHSSEEEEGGG
T ss_pred cccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcC-CHHHHHHHHHHHHCCCEeeHHH
Confidence 99999999999999999999999999999999999999999999999999986 7899999999999999987643
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=3.5e-52 Score=466.83 Aligned_cols=296 Identities=33% Similarity=0.480 Sum_probs=244.1
Q ss_pred HHHHHhcCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhHHhHhhhhcCCCeEEEEcCCCCCCcccccccccccc
Q 008899 169 LEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAG 248 (549)
Q Consensus 169 i~~~~l~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e~lipL~l~~~~~vILvGD~~QLpPiv~s~~~~~~~ 248 (549)
+...++..++||+||+++++.. ......||+||||||+|++++++++|+.. +++++|+||||+||||++.+..+...|
T Consensus 312 ~~~~~l~~~~vI~~T~~~~~~~-~l~~~~fd~viIDEAsQ~~e~~~li~l~~-~~~~~ilvGD~~QL~p~v~~~~~~~~g 389 (624)
T 2gk6_A 312 AERELLMNADVICCTCVGAGDP-RLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAG 389 (624)
T ss_dssp HHHHHHHTCSEEEEETGGGGCG-GGTTCCCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCSCHHHHHHT
T ss_pred HHHHHHhcCCEEEEcChhhcch-hhhcCCCCEEEEecccccCcHHHHHHHHh-cCCeEEEecChhccCCeeecHHHHHcC
Confidence 4567889999999999988752 23346899999999999999999999863 578999999999999999998888889
Q ss_pred CcccHHHHHHhcCCCcccceeccccCccccccCcccccccccccCcccccccccccCCC-CCCCCCeEEEEcCCCcccc-
Q 008899 249 FGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLP-GTELGPYSFINIIGGSEEF- 326 (549)
Q Consensus 249 ~~~SLfeRl~~~~~~~~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~-~~~~~~~~fidv~~g~e~~- 326 (549)
++.|+|+|+...+.+.++|++||||||+|+.|+|..||+|+|.+++.+..+.......+ .....|+.|+++. |.++.
T Consensus 390 l~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~-g~~~~~ 468 (624)
T 2gk6_A 390 LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQ-GQEEIA 468 (624)
T ss_dssp TTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECC-CCEECC
T ss_pred CchhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcC-Ccceec
Confidence 99999999998888889999999999999999999999999988776544432110111 1224588898884 44433
Q ss_pred -cccccCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEccchHHHHHHHHHHhhhhcC--CCCCeEEEecccCCCCcccc
Q 008899 327 -IYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYEN--KDGFTVKVKSIDGFQGGEED 403 (549)
Q Consensus 327 -~~~S~~N~~Ea~~V~~lv~~L~~~~~~~~~~~sIgIITPY~aQ~~~I~~~L~~~~~~--~~~~~v~V~TVd~fQG~E~D 403 (549)
.+.|+.|..||..|.+++..|++.+.. ..+|||||||++|+..|++.+...... .....+.|+|||+|||+|+|
T Consensus 469 ~~~~s~~N~~Ea~~v~~~v~~l~~~g~~---~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~d 545 (624)
T 2gk6_A 469 SSGTSYLNRTEAANVEKITTKLLKAGAK---PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKD 545 (624)
T ss_dssp TTSSCCEEHHHHHHHHHHHHHHHTTTCC---GGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEE
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHcCCC---CCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccC
Confidence 678899999999999999999876543 348999999999999999988653110 01236899999999999999
Q ss_pred EEEEEccccCCCCCcccCCCCCcceeeccccccceEEEeehhhhhccchHHHHHHHHHHhCCceecCC
Q 008899 404 IIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKARQCFFNAD 471 (549)
Q Consensus 404 iVIlS~vrs~~~~~~GFl~d~~RlNVAlTRAR~~LiIiGn~~tL~~~~~~w~~li~~~~~~g~~~~~~ 471 (549)
+||+|+||++..+.+||+.+++|+|||+||||++||||||..+|.+ ++.|+.++++++++||+++++
T Consensus 546 vVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~-~~~~~~li~~~~~~~~~~~~~ 612 (624)
T 2gk6_A 546 FIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK-QPLWNHLLNYYKEQKVLVEGP 612 (624)
T ss_dssp EEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTT-SHHHHHHHHHHHHTTCCCCSC
T ss_pred EEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECHHHHcc-ChHHHHHHHHHHHCCCEEeCC
Confidence 9999999999888899999999999999999999999999999986 799999999999999998874
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=2.9e-51 Score=469.28 Aligned_cols=297 Identities=33% Similarity=0.473 Sum_probs=251.0
Q ss_pred HHHHHHhcCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhHHhHhhhhcCCCeEEEEcCCCCCCccccccccccc
Q 008899 168 LLEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEA 247 (549)
Q Consensus 168 ~i~~~~l~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e~lipL~l~~~~~vILvGD~~QLpPiv~s~~~~~~ 247 (549)
.+...++..++||+||+++++.. ......||+||||||+|+++++.++|+. .+.+++|+||||+||||++.+..+...
T Consensus 487 ~~~~~~l~~a~VI~~T~~~~~~~-~l~~~~fd~viIDEAsQ~~e~~~li~l~-~~~~~~ilvGD~~QLpPvv~s~~a~~~ 564 (800)
T 2wjy_A 487 TAERELLMNADVICCTCVGAGDP-RLAKMQFRSILIDESTQATEPECMVPVV-LGAKQLILVGDHCQLGPVVMCKKAAKA 564 (800)
T ss_dssp HHHHHHHHHCSEEEEETGGGGCT-TTTTCCCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHT
T ss_pred HHHHhhhccCCEEEEchhhhCCh-hhhcCCCCEEEEECCCCCCcHHHHHHHH-hcCCeEEEecccccCCCeecchhhhhc
Confidence 34567889999999999998752 2334589999999999999999999985 457899999999999999999888888
Q ss_pred cCcccHHHHHHhcCCCcccceeccccCccccccCcccccccccccCcccccccccc-cCCCCCCCCCeEEEEcCCCcccc
Q 008899 248 GFGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEK-HYLPGTELGPYSFINIIGGSEEF 326 (549)
Q Consensus 248 ~~~~SLfeRl~~~~~~~~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~-~~l~~~~~~~~~fidv~~g~e~~ 326 (549)
|++.|+|+|+...+.+.++|++||||||+|+.|+|..||+|+|.+++.+..+.... .+.......|+.|+++. |.++.
T Consensus 565 gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~-g~e~~ 643 (800)
T 2wjy_A 565 GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQ-GQEEI 643 (800)
T ss_dssp TTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEECC-CCCEE
T ss_pred CcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEEcC-Cceee
Confidence 99999999999888888999999999999999999999999998877665443211 11111234588999984 44433
Q ss_pred --cccccCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEccchHHHHHHHHHHhhhhcC--CCCCeEEEecccCCCCccc
Q 008899 327 --IYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYEN--KDGFTVKVKSIDGFQGGEE 402 (549)
Q Consensus 327 --~~~S~~N~~Ea~~V~~lv~~L~~~~~~~~~~~sIgIITPY~aQ~~~I~~~L~~~~~~--~~~~~v~V~TVd~fQG~E~ 402 (549)
.+.|+.|..||..|++++..|++.+... .+|||||||++|+..|++.+...... .....+.|+|||+|||+|+
T Consensus 644 ~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~---~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~ 720 (800)
T 2wjy_A 644 ASSGTSYLNRTEAANVEKITTKLLKAGAKP---DQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK 720 (800)
T ss_dssp CSSBSCEECHHHHHHHHHHHHHHHHTTCCG---GGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCE
T ss_pred cCCCCcccCHHHHHHHHHHHHHHHHcCCCc---ccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcC
Confidence 6789999999999999999998876543 48999999999999999998653210 0123689999999999999
Q ss_pred cEEEEEccccCCCCCcccCCCCCcceeeccccccceEEEeehhhhhccchHHHHHHHHHHhCCceecCC
Q 008899 403 DIIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKARQCFFNAD 471 (549)
Q Consensus 403 DiVIlS~vrs~~~~~~GFl~d~~RlNVAlTRAR~~LiIiGn~~tL~~~~~~w~~li~~~~~~g~~~~~~ 471 (549)
|+||+|+||++..+.+||+.+++|+|||+||||++|+||||..+|.+ ++.|+.++++++++||+++++
T Consensus 721 dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~-~~~w~~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 721 DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK-QPLWNHLLNYYKEQKVLVEGP 788 (800)
T ss_dssp EEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTS-SHHHHHHHHHHHHTTCEEESC
T ss_pred CEEEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHhcc-CHHHHHHHHHHHHCCCEEeCC
Confidence 99999999999888899999999999999999999999999999986 799999999999999999874
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-50 Score=462.33 Aligned_cols=295 Identities=33% Similarity=0.527 Sum_probs=248.7
Q ss_pred HHHHHhcCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhHHhHhhhhcCCCeEEEEcCCCCCCcccccccccccc
Q 008899 169 LEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAG 248 (549)
Q Consensus 169 i~~~~l~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e~lipL~l~~~~~vILvGD~~QLpPiv~s~~~~~~~ 248 (549)
....++..++||++|+.+++... ... .||+||||||+|+++++.++|+. .+.+++|+||||+||||++.+..+...+
T Consensus 491 ~~~~~l~~a~VI~~T~~~~~~~~-L~~-~fd~viIDEA~q~~e~~~li~l~-~~~~~lilvGD~~QL~pvv~s~~a~~~g 567 (802)
T 2xzl_A 491 TEAEILNKADVVCCTCVGAGDKR-LDT-KFRTVLIDESTQASEPECLIPIV-KGAKQVILVGDHQQLGPVILERKAADAG 567 (802)
T ss_dssp HHHHHHHTCSEEEEETTGGGCTT-CCS-CCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHTT
T ss_pred HHHHHhccCCEEEechhhcChHH-Hhc-cCCEEEEECccccchHHHHHHHH-hCCCEEEEEeCccccCCeechhhhhhcC
Confidence 34567899999999999887522 222 89999999999999999999985 4678999999999999999988888889
Q ss_pred CcccHHHHHHhcCCCcccceeccccCccccccCcccccccccccCcccccccccccCCC-CCCCCCeEEEEcCCCcccc-
Q 008899 249 FGRSLFERLTSLNHSKHLLNVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLP-GTELGPYSFINIIGGSEEF- 326 (549)
Q Consensus 249 ~~~SLfeRl~~~~~~~~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~-~~~~~~~~fidv~~g~e~~- 326 (549)
++.|+|+|+...+...++|++||||||+|++|+|..||+|+|.+++.+..+.......+ .....|+.|+++. |.++.
T Consensus 568 l~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~-g~~~~~ 646 (802)
T 2xzl_A 568 LKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANY-GREEIS 646 (802)
T ss_dssp TTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEECC-CCCEEC
T ss_pred CchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEcC-Cceeec
Confidence 99999999998888889999999999999999999999999988776654432211111 1124588899884 44433
Q ss_pred -cccccCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEccchHHHHHHHHHHhhhhc--CCCCCeEEEecccCCCCcccc
Q 008899 327 -IYHSCRNMVEVSVVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYE--NKDGFTVKVKSIDGFQGGEED 403 (549)
Q Consensus 327 -~~~S~~N~~Ea~~V~~lv~~L~~~~~~~~~~~sIgIITPY~aQ~~~I~~~L~~~~~--~~~~~~v~V~TVd~fQG~E~D 403 (549)
.+.|+.|..||..|++++..|.+.+.. ..+|||||||++|+..|++.|..... ......+.|+|||+|||+|+|
T Consensus 647 ~~~~s~~N~~EA~~V~~~v~~L~~~g~~---~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~d 723 (802)
T 2xzl_A 647 ANGTSFLNRIEAMNCERIITKLFRDGVK---PEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKD 723 (802)
T ss_dssp TTSSSEECHHHHHHHHHHHHHHHHTTCC---GGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHcCCC---cccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccC
Confidence 678899999999999999999887654 34899999999999999999865311 001136899999999999999
Q ss_pred EEEEEccccCCCCCcccCCCCCcceeeccccccceEEEeehhhhhccchHHHHHHHHHHhCCceecCC
Q 008899 404 IIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLISSESIWGALVCDAKARQCFFNAD 471 (549)
Q Consensus 404 iVIlS~vrs~~~~~~GFl~d~~RlNVAlTRAR~~LiIiGn~~tL~~~~~~w~~li~~~~~~g~~~~~~ 471 (549)
+||+|+||++..+.+||+.+++|+|||+||||++||||||..+|.+ ++.|+.++++++++||+++++
T Consensus 724 vVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~-~~~w~~ll~~~~~~~~~~~~~ 790 (802)
T 2xzl_A 724 YIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLAR-NTLWNHLLIHFREKGCLVEGT 790 (802)
T ss_dssp EEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTT-SHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhcc-ChHHHHHHHHHHHcCCeecCC
Confidence 9999999999888899999999999999999999999999999986 799999999999999998864
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.73 E-value=3.3e-18 Score=189.54 Aligned_cols=201 Identities=17% Similarity=0.172 Sum_probs=131.2
Q ss_pred CCCCEEEEEcCCCCChhHHhHhhh-hcCCCeEEEEcCCCCCCccccccccccccCcccHHHHHHhcCCCcccceeccccC
Q 008899 196 KPLNFLVIDEAAQLKESESTIPLQ-LAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSLNHSKHLLNVQYRMH 274 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL~-l~~~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~~~~~~~~L~~qYRmh 274 (549)
.++|+||||||+|+....+...+. ++...++|++||+.||||+... +.|..+.. ..+.+.|+.+||++
T Consensus 278 ~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~-~~~~~~L~~~~R~~ 346 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQ-AAPTIKLTQVYRQA 346 (574)
T ss_dssp CSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHH-HSCEEECCCCCHHH
T ss_pred ccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCC----------cHHHHHHh-cCCEEEcceeEeCC
Confidence 468999999999998775433332 3456799999999999998532 45666666 77899999999997
Q ss_pred --ccccccCcccccccccccCcccccccccccCCCCCCCCCeEEEEcCCCcccccccccCCHHHHHHHHHHHHHHHHhhc
Q 008899 275 --PSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWV 352 (549)
Q Consensus 275 --p~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lv~~L~~~~~ 352 (549)
+.|..+.+. +..|.+.... ..+.|+..... +. .+..+.+++. +.
T Consensus 347 ~~s~I~~~a~~-i~~g~~~~~~-----------------~d~~~~~~~~~-~~----------~~~~i~~~~~-----~~ 392 (574)
T 3e1s_A 347 AKNPIIQAAHG-LLHGEAPAWG-----------------DKRLNLTEIEP-DG----------GARRVALMVR-----EL 392 (574)
T ss_dssp HTCHHHHHHHH-HHTTCCCCCC-----------------BTTEEEEECCS-TT----------CHHHHHHHHH-----HT
T ss_pred CccHHHHHHHH-HhCCCCcccC-----------------CCeEEEeCCCH-HH----------HHHHHHHHHh-----cc
Confidence 678887753 3444322110 13445543211 10 1233444333 21
Q ss_pred CCCCCccEEEEccchHH---HHHHHHHHhhhhcCC-----------------------------C----------CCe--
Q 008899 353 GSKQKVSIGVVSPYTAQ---AVAIRKKIGSEYENK-----------------------------D----------GFT-- 388 (549)
Q Consensus 353 ~~~~~~sIgIITPY~aQ---~~~I~~~L~~~~~~~-----------------------------~----------~~~-- 388 (549)
. ...++.|+||.+.. +..+...+.+.+... + ...
T Consensus 393 ~--~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~ 470 (574)
T 3e1s_A 393 G--GPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLT 470 (574)
T ss_dssp T--SGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEE
T ss_pred C--cccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEE
Confidence 1 12378899988754 444444443322100 0 000
Q ss_pred --------------------EEEecccCCCCccccEEEEEccccCCCCCcccCCCCCcceeeccccccceEEEeehhhhh
Q 008899 389 --------------------VKVKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRARHCLWILGNERTLI 448 (549)
Q Consensus 389 --------------------v~V~TVd~fQG~E~DiVIlS~vrs~~~~~~GFl~d~~RlNVAlTRAR~~LiIiGn~~tL~ 448 (549)
..+.|||++||.|+|.||+.+.... ..+.+++++|||+||||+.|+++|+...|.
T Consensus 471 v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 471 VDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp EEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred EEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 1136999999999999999987543 246678999999999999999999988664
No 6
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.61 E-value=1.5e-15 Score=161.96 Aligned_cols=200 Identities=16% Similarity=0.152 Sum_probs=127.6
Q ss_pred CCCEEEEEcCCCCChhHHhHhhhhcCCCeEEEEcCCCCCCccccccccccccCccc-HHHHHHhcCCCcccceeccccCc
Q 008899 197 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRS-LFERLTSLNHSKHLLNVQYRMHP 275 (549)
Q Consensus 197 ~fd~VIVDEAsq~~e~e~lipL~l~~~~~vILvGD~~QLpPiv~s~~~~~~~~~~S-LfeRl~~~~~~~~~L~~qYRmhp 275 (549)
.+|+||||||+|+........+.+.+++++|++||+.||||+...+. +... -|.++. ......++.+|||++
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~~-----~~~~~~~~~l~--~~~~~~~~~SyR~p~ 306 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTG-----FPYPAHFAKLE--VDEVETRRTTLRCPA 306 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCSTT-----CCCCHHHHSCC--CSEEEEECEESSCCH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCCC-----ccchhhhhhcc--cCcEEEeeeEeCCCH
Confidence 38999999999998776554444456699999999999999965532 2111 122221 123456889999999
Q ss_pred cccccCcccccccccccCcccccccccccCCCCCCCCCeEEEEcCCCcccccccccCCHHHHHHHHHHHHHHHHhhcCCC
Q 008899 276 SISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVGSK 355 (549)
Q Consensus 276 ~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lv~~L~~~~~~~~ 355 (549)
.++.|.+.. |++++.+...+ ...+.+..+.+. ... +. .. .
T Consensus 307 dv~~lLs~l-Y~~~V~t~s~~--------------~~sv~~~~I~~~-~~~------~~-----------------~~-~ 346 (446)
T 3vkw_A 307 DVTHFLNQR-YEGHVMCTSSE--------------KKSVSQEMVSGA-ASI------NP-----------------VS-K 346 (446)
T ss_dssp HHHHHHHTT-SSSCCEECCCC--------------CCCEEEEECCCG-GGC------CT-----------------TT-S
T ss_pred HHHHHHHhh-cCCceEECCCc--------------CceEEEeccccc-ccc------cc-----------------cc-C
Confidence 999999864 87765432111 124445444221 110 00 00 0
Q ss_pred CCccEEEEccchHHHHHHHHHHhhhhcCCCCCeEE-EecccCCCCccccEEEEEccccCCCCCcccCCCCCcceeecccc
Q 008899 356 QKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVK-VKSIDGFQGGEEDIIIISTVRCNAGGSIGFISKPQRVNVALTRA 434 (549)
Q Consensus 356 ~~~sIgIITPY~aQ~~~I~~~L~~~~~~~~~~~v~-V~TVd~fQG~E~DiVIlS~vrs~~~~~~GFl~d~~RlNVAlTRA 434 (549)
...--|||+..+....+.+. ++. +.|||++||.|+|.|.+.. .+......|..++.+++||+|||
T Consensus 347 -~~~g~iLtftq~~k~~L~~~-----------G~~~~~Tv~e~QG~tf~~Vtlvr--~~~~~~~l~~~~~~~~~VALTRh 412 (446)
T 3vkw_A 347 -PLKGKILTFTQSDKEALLSR-----------GYADVHTVHEVQGETYADVSLVR--LTPTPVSIIARDSPHVLVSLSRH 412 (446)
T ss_dssp -CCCSEEEESSHHHHHHHHTT-----------TCCSCEETGGGTTCCEEEEEEEE--CCCSCCTTCSTTCHHHHHHHSSE
T ss_pred -CCCCeEEEcCHHHHHHHHHh-----------CCCCccCHHHcCCcccCeEEEEE--CCCCCcccccCCccceEEEeecC
Confidence 00124678777666555431 123 8999999999999998743 33222233445788999999999
Q ss_pred ccceEEEeehhhhhccchHHHHHHHHHHh
Q 008899 435 RHCLWILGNERTLISSESIWGALVCDAKA 463 (549)
Q Consensus 435 R~~LiIiGn~~tL~~~~~~w~~li~~~~~ 463 (549)
|..|.++.-. +..|-+.|.++..
T Consensus 413 ~~~L~~~tv~------~D~~~~~i~~~~~ 435 (446)
T 3vkw_A 413 TKSLKYYTVV------MDPLVSIIRDLER 435 (446)
T ss_dssp EEEEEEEESS------CCHHHHHHHHHHH
T ss_pred CCEEEEEEec------CChHHHHHHHhhh
Confidence 9999998531 4556666666653
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.56 E-value=2.3e-15 Score=162.40 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCCCChhHHhHhhh-hcCCCeEEEEcCCCCCCccccccccccccCcccHHHHHHhcCCCcccceeccccC
Q 008899 196 KPLNFLVIDEAAQLKESESTIPLQ-LAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSLNHSKHLLNVQYRMH 274 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL~-l~~~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~~~~~~~~L~~qYRmh 274 (549)
..++++|||||+++.....-..+. +.+..+++++||+.||||+........ + ..++. ..+.+.+.|+.+||++
T Consensus 127 ~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~--l-~~~~~---~~~~~~~~L~~~~R~~ 200 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAY--I-SPFFT---HKDFYQCELTEVKRSN 200 (459)
T ss_dssp SSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCC--C-CGGGT---CTTEEEEECCCCCCCC
T ss_pred cCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchHh--H-HHHHh---cCCCcEEeceeeeeCC
Confidence 468999999999998655333332 334679999999999999876431110 1 11111 1245678999999999
Q ss_pred ccccccCcccc
Q 008899 275 PSISLFPNLQF 285 (549)
Q Consensus 275 p~I~~f~n~~f 285 (549)
+.|..+.+...
T Consensus 201 ~~I~~~a~~lr 211 (459)
T 3upu_A 201 APIIDVATDVR 211 (459)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998654
No 8
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.56 E-value=2.5e-15 Score=167.73 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCCCChhHHhHhh-hhcCCCeEEEEcCCCCCCccccccc----c--ccccCcccHHHHHHhcC-------
Q 008899 196 KPLNFLVIDEAAQLKESESTIPL-QLAGINHAVLIGDECQLPAMVASKI----S--DEAGFGRSLFERLTSLN------- 261 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL-~l~~~~~vILvGD~~QLpPiv~s~~----~--~~~~~~~SLfeRl~~~~------- 261 (549)
.++|++|||||+|+....+...+ .++...++||+||+.||||+..... . ...|+..++++++....
T Consensus 261 l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~ 340 (608)
T 1w36_D 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 (608)
T ss_dssp CSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCC
T ss_pred CCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCcccccc
Confidence 37899999999999976432222 2456689999999999999975542 1 23567788888887531
Q ss_pred ----CC-----cccceeccccCcc--ccccCc
Q 008899 262 ----HS-----KHLLNVQYRMHPS--ISLFPN 282 (549)
Q Consensus 262 ----~~-----~~~L~~qYRmhp~--I~~f~n 282 (549)
.+ .+.|+++||+++. |..+.+
T Consensus 341 ~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~ 372 (608)
T 1w36_D 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 (608)
T ss_dssp STTTTHHHHTTEEECCCCCCSSCCTTHHHHHH
T ss_pred cccccccccccEEecceeeeeCCcchHHHHHH
Confidence 11 5789999999876 777664
No 9
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.53 E-value=2.5e-14 Score=159.93 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=99.1
Q ss_pred CCCEEEEEcCCCCChhHHhHhhhhc-CCCeEEEEcCCCCCCccccccccccccCcccHHHHHHhc--CCCcccceecccc
Q 008899 197 PLNFLVIDEAAQLKESESTIPLQLA-GINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL--NHSKHLLNVQYRM 273 (549)
Q Consensus 197 ~fd~VIVDEAsq~~e~e~lipL~l~-~~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~~--~~~~~~L~~qYRm 273 (549)
+|++|+|||++++++.+.-+...+. ..+++++|||++|- +....|.....|.++... +...+.|+.|||+
T Consensus 213 ~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~Qs-------Iy~frga~~~~~~~~~~~~~~~~~~~L~~nyRs 285 (647)
T 3lfu_A 213 RFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQS-------IYGWRGAQVENIQRFLNDFPGAETIRLEQNYRS 285 (647)
T ss_dssp HCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGGC-------CCGGGTCCTTHHHHHHHHCTTCEEEEECBCSSS
T ss_pred hCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchhh-------hccccCCCHHHHHHHHHhCCCCeEEEcccCCCC
Confidence 6999999999999988754444333 45789999999993 222334456666666543 3456889999999
Q ss_pred CccccccCcccccccccccCcccccccccccCCCCCCCCCeEEEEcCCCcccccccccCCHHHHHHHHHHHHHHHHhhcC
Q 008899 274 HPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYKAWVG 353 (549)
Q Consensus 274 hp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lv~~L~~~~~~ 353 (549)
+|.|..++|..|+.+........ +.......++.++... ....|+..|++.+..+.+.+..
T Consensus 286 ~~~I~~~~n~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----------~~~~e~~~ia~~I~~l~~~g~~ 346 (647)
T 3lfu_A 286 TSNILSAANALIENNNGRLGKKL--------WTDGADGEPISLYCAF-----------NELDEARFVVNRIKTWQDNGGA 346 (647)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCC--------BCSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhcccccCCcc--------ccCCCCCCceEEEecC-----------ChHHHHHHHHHHHHHHHHcCCC
Confidence 99999999998876532111110 0001111234444331 1356999999999999876543
Q ss_pred CCCCccEEEEccchHHHHHHH
Q 008899 354 SKQKVSIGVVSPYTAQAVAIR 374 (549)
Q Consensus 354 ~~~~~sIgIITPY~aQ~~~I~ 374 (549)
..+|+|+++++.|...+.
T Consensus 347 ---~~diaVL~r~~~~~~~l~ 364 (647)
T 3lfu_A 347 ---LAECAILYRSNAQSRVLE 364 (647)
T ss_dssp ---GGGEEEEESSGGGHHHHH
T ss_pred ---ccCEEEEEeCchhHHHHH
Confidence 348999999987764433
No 10
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.44 E-value=2e-13 Score=128.43 Aligned_cols=144 Identities=16% Similarity=0.082 Sum_probs=97.9
Q ss_pred eeccccCccccccCcccccccccccCcccccccccccCCCCCCCCCeEEEEcCCCcccccccccCCHHHHHHHHHHHHHH
Q 008899 268 NVQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKL 347 (549)
Q Consensus 268 ~~qYRmhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lv~~L 347 (549)
+++||++++|.+|+|..+.++. ... . ... .+. +..++... ....|+..|++.+..
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~-----~~~--~----~~~-~G~-~p~~~~~~-----------~~~~e~~~i~~~I~~- 56 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE-----AVT--A----FDR-QGD-LPNVVVTP-----------NFEAGVDQVVDQLAM- 56 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC-------------------C-CCC-CCEEEEES-----------SHHHHHHHHHHHHHH-
T ss_pred CCCCCChHHHHHHHHHHhcCCC-----ccc--C----CCC-CCC-CCEEEEeC-----------CHHHHHHHHHHHHHH-
Confidence 5799999999999997765432 000 0 000 111 22222221 124588888888877
Q ss_pred HHhhcCCCCCccEEEEccchHHHHHHHHHHhhhh-c--------CCCCCeEEEecccCCCCccccEEEEEccccCCCCCc
Q 008899 348 YKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEY-E--------NKDGFTVKVKSIDGFQGGEEDIIIISTVRCNAGGSI 418 (549)
Q Consensus 348 ~~~~~~~~~~~sIgIITPY~aQ~~~I~~~L~~~~-~--------~~~~~~v~V~TVd~fQG~E~DiVIlS~vrs~~~~~~ 418 (549)
...+ ..+||||++.+.|...+.+.|.... . ......|.|.|+|.++|.|+|.||+..+.... .
T Consensus 57 ~~~g-----~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~---~ 128 (174)
T 3dmn_A 57 NDSE-----RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN---Y 128 (174)
T ss_dssp HHHT-----TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT---S
T ss_pred hccC-----CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc---C
Confidence 4433 2379999999999999999996541 1 11234699999999999999999998765431 1
Q ss_pred ccCCCCCcceeeccccccceEEEeeh
Q 008899 419 GFISKPQRVNVALTRARHCLWILGNE 444 (549)
Q Consensus 419 GFl~d~~RlNVAlTRAR~~LiIiGn~ 444 (549)
....+++++|||+||||+.|+|++..
T Consensus 129 ~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 129 QREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp CSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred CChhhhceeEEEecCcccEEEEEeCC
Confidence 12456788999999999999999864
No 11
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.37 E-value=9.1e-13 Score=149.86 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCCCCChhHHhHhhhhcC-CCeEEEEcCCCCCCccccccccccccCcccHHHHHHhc--CCCcccceeccc
Q 008899 196 KPLNFLVIDEAAQLKESESTIPLQLAG-INHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL--NHSKHLLNVQYR 272 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL~l~~-~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~~--~~~~~~L~~qYR 272 (549)
.+|++|+|||+++.+..+.-+.-.+.+ ...+++|||+.|- +....|.....+.++... +...+.|..+||
T Consensus 215 ~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs-------IY~fRGA~~~~~~~f~~~~~~~~~i~L~~NyR 287 (724)
T 1pjr_A 215 YKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQS-------IYRWRGADIQNILSFERDYPNAKVILLEQNYR 287 (724)
T ss_dssp HHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGC-------CCGGGTCCTHHHHTHHHHSTTCEEEEECBCSS
T ss_pred hhCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhh-------cccccCCCHHHHHHHHHHCCCCcEEECCCCCC
Confidence 369999999999999887544433333 3689999999995 222233334444443322 345688999999
Q ss_pred cCccccccCcccccccccccCcccccccccccCCCCCCCCCeEEEEcCCCcccccccccCCHHHHHHHHHHHHHHHH-hh
Q 008899 273 MHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYK-AW 351 (549)
Q Consensus 273 mhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lv~~L~~-~~ 351 (549)
+++.|.+++|..+.++.-...... +.......++.++... ....|+..|++.+..+.. .+
T Consensus 288 St~~Il~~an~li~~n~~~~~k~l--------~~~~~~g~~i~~~~~~-----------~~~~Ea~~va~~I~~l~~~~g 348 (724)
T 1pjr_A 288 STKRILQAANEVIEHNVNRKPKRI--------WTENPEGKPILYYEAM-----------NEADEAQFVAGRIREAVERGE 348 (724)
T ss_dssp SCHHHHHHHHHHHTTCSSCCCCCC--------BCSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhCccccCccc--------ccccCCCCceEEEecC-----------CHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988765421111100 0001111234443321 135689999999988875 33
Q ss_pred cCCCCCccEEEEccchHHHHHHHHH
Q 008899 352 VGSKQKVSIGVVSPYTAQAVAIRKK 376 (549)
Q Consensus 352 ~~~~~~~sIgIITPY~aQ~~~I~~~ 376 (549)
. ...+|+|+++.++|...+.+.
T Consensus 349 ~---~~~diAIL~R~~~~~~~le~~ 370 (724)
T 1pjr_A 349 R---RYRDFAVLYRTNAQSRVMEEM 370 (724)
T ss_dssp C---CGGGEEEEESSGGGHHHHHHH
T ss_pred C---ChhheeeeeecchhHHHHHHH
Confidence 2 234899999988877655443
No 12
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.34 E-value=2.1e-12 Score=145.59 Aligned_cols=143 Identities=15% Similarity=0.059 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCCCChhHHhHhhhhcC-CCeEEEEcCCCCCCccccccccccccCcccHHHHHHhc--CCCcccceeccc
Q 008899 196 KPLNFLVIDEAAQLKESESTIPLQLAG-INHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL--NHSKHLLNVQYR 272 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL~l~~-~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~~--~~~~~~L~~qYR 272 (549)
..|++|+|||+++.+..+.-+.-.+.+ ..++++|||+.|- +....|.....|.++... +...+.|+.+||
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vGD~~Qs-------Iy~frga~~~~~~~~~~~~~~~~~~~L~~nyR 278 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQS-------IYSWRGARPQNLVLLSQDFPALKVIKLEQNYR 278 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEECCGGGC-------CCGGGTBCTTHHHHHHHHSTTCEEECCCCBSS
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEeCchhh-------hhhccCCCHHHHHHHHHhCCCCeEEECCCCCC
Confidence 479999999999999887544333333 4689999999994 222334445566665442 345688999999
Q ss_pred cCccccccCcccccccccccCcccccccccccCCCC-CCCCCeEEEEcCCCcccccccccCCHHHHHHHHHHHHHHH-Hh
Q 008899 273 MHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPG-TELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLY-KA 350 (549)
Q Consensus 273 mhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~~-~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lv~~L~-~~ 350 (549)
++|.|..+.|..|..+.-.... ...+. ....++.++... ....|+..|++.+..+. ..
T Consensus 279 s~~~I~~~an~~~~~~~~~~~~---------~l~~~~~~g~~i~~~~~~-----------~~~~e~~~va~~I~~l~~~~ 338 (673)
T 1uaa_A 279 SSGRILKAANILIANNPHVFEK---------RLFSELGYGAELKVLSAN-----------NEEHEAERVTGELIAHHFVN 338 (673)
T ss_dssp SCHHHHHHHHHHHHTSCCSSCC---------CCCBSSCCCCCBEEEECS-----------SHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhchhcccc---------cccccCCCCCCceEEecC-----------CHHHHHHHHHHHHHHHHhcc
Confidence 9999999999877653211000 00010 111233333321 13568999999988887 44
Q ss_pred hcCCCCCccEEEEccchH
Q 008899 351 WVGSKQKVSIGVVSPYTA 368 (549)
Q Consensus 351 ~~~~~~~~sIgIITPY~a 368 (549)
+.. ..+|+|+++.+.
T Consensus 339 g~~---~~diaVL~r~~~ 353 (673)
T 1uaa_A 339 KTQ---YKDYAILYRGNH 353 (673)
T ss_dssp CCC---TTTEEEEESSSG
T ss_pred CCC---ccCEEEEEechh
Confidence 433 236888877654
No 13
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.04 E-value=3.5e-10 Score=135.60 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCCChhHHhHhhhhcC----CCeEEEEcCCCCCCccccccccccccCcccHHHHHHhc-----C--CCcc
Q 008899 197 PLNFLVIDEAAQLKESESTIPLQLAG----INHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSL-----N--HSKH 265 (549)
Q Consensus 197 ~fd~VIVDEAsq~~e~e~lipL~l~~----~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~~-----~--~~~~ 265 (549)
.|++|+|||++..+..+.-+.-.+.+ ...+++|||++|- +....|....+|...... + ...+
T Consensus 400 ~~~~IlVDEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Qs-------IY~FRgAd~~~f~~~~~~~~~~~~~~~~~i 472 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQS-------IYRFRLAEPLLFLSKYKRFTESGEGTGRKI 472 (1232)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGGC-------CCTTTTCCTHHHHHHHHHSBSSCTTSCEEE
T ss_pred CCCEEEEEccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchHH-------hHhccCCCHHHHHHHHHHhhhhcCCCCcEe
Confidence 69999999999999887554444444 4689999999993 222234455566555432 1 2567
Q ss_pred cceeccccCccccccCcccccc
Q 008899 266 LLNVQYRMHPSISLFPNLQFYR 287 (549)
Q Consensus 266 ~L~~qYRmhp~I~~f~n~~fY~ 287 (549)
.|..+||+++.|..+.|..|-.
T Consensus 473 ~L~~NyRS~~~Il~~~n~lf~~ 494 (1232)
T 3u4q_A 473 DLNKNFRSRADILDSTNFLFKQ 494 (1232)
T ss_dssp EECEESSSCHHHHHHHHHHHHT
T ss_pred ECCCCCCCChHHHHHHHHHHhh
Confidence 8999999999999999987743
No 14
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=98.98 E-value=7.5e-10 Score=132.22 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCCChhHHhHhhhhcC---CCeEEEEcCCCCCCccccccccccccCcccHHHHHHhcCCCcccceecccc
Q 008899 197 PLNFLVIDEAAQLKESESTIPLQLAG---INHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTSLNHSKHLLNVQYRM 273 (549)
Q Consensus 197 ~fd~VIVDEAsq~~e~e~lipL~l~~---~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~~~~~~~~L~~qYRm 273 (549)
+|++|+|||++..+..+.-+.-.+.+ ...+++|||++|- +....|.+...|.+........+.|.++||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQS-------IY~FRGAd~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQA-------IYAFRGADIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGC-------CCGGGTCCHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccc-------cccCcCCCHHHHHHHHHhcCCceeCCCCcCC
Confidence 69999999999999887544433332 3579999999994 1111222222233333222456889999999
Q ss_pred CccccccCccccc
Q 008899 274 HPSISLFPNLQFY 286 (549)
Q Consensus 274 hp~I~~f~n~~fY 286 (549)
+|.|.++.|..|-
T Consensus 450 ~~~Il~~~N~lf~ 462 (1180)
T 1w36_B 450 APGMVNSVNKLFS 462 (1180)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 9999999998664
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=96.61 E-value=0.0036 Score=74.65 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=87.2
Q ss_pred CEEEEEcCCCCChhHHhHhhhhcC-CCeEE--EEcCCCCCCccc-cccccccccCcccHHHHHHh-cCC---Ccccceec
Q 008899 199 NFLVIDEAAQLKESESTIPLQLAG-INHAV--LIGDECQLPAMV-ASKISDEAGFGRSLFERLTS-LNH---SKHLLNVQ 270 (549)
Q Consensus 199 d~VIVDEAsq~~e~e~lipL~l~~-~~~vI--LvGD~~QLpPiv-~s~~~~~~~~~~SLfeRl~~-~~~---~~~~L~~q 270 (549)
.+|+|||++..+..+.-+.-.+.+ .+++. ++||+.+.+... ...+....|-....+.++.. .+. ..+.|..+
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L~~n 282 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKELSGTE 282 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEECSCS
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhHHHHHHHHHHHHHHcCCCcccceecCCC
Confidence 799999999999887554433332 35544 679966543100 00111111111122333322 223 36789999
Q ss_pred cccCccccccCcccccccccccCcccccccccccCCCCCCCCCeEEEEcCCCcccccccccCCHHHHHHHHHHHHHHHH-
Q 008899 271 YRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTELGPYSFINIIGGSEEFIYHSCRNMVEVSVVIKILQKLYK- 349 (549)
Q Consensus 271 YRmhp~I~~f~n~~fY~g~L~~~~~v~~~~~~~~~l~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lv~~L~~- 349 (549)
||+++.|..+.+..+... +. . ..++. ..++.++... .-..|+..|++.+..+..
T Consensus 283 yRs~~~il~~i~~~~~~~-----~~---~-----~~~~~-~~~i~i~~~~-----------~~~~Ea~~ia~~I~~l~~~ 337 (1166)
T 3u4q_B 283 RHTKTPELAHLEAQYEAR-----PA---I-----PYAEK-QEALTVMQAA-----------NRRAELEGIAREIHALVRE 337 (1166)
T ss_dssp TTTTCHHHHHHHHSSSCS-----SC---C-----CCCSC-CSSEEEEEES-----------SHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhHhhc-----CC---C-----ccCCC-CCCeEEEEcC-----------ChHHHHHHHHHHHHHHHHh
Confidence 999999887765543211 00 0 01111 1234443331 124689999999998887
Q ss_pred hhcCCCCCccEEEEccch-HHHHHHHHHHhh
Q 008899 350 AWVGSKQKVSIGVVSPYT-AQAVAIRKKIGS 379 (549)
Q Consensus 350 ~~~~~~~~~sIgIITPY~-aQ~~~I~~~L~~ 379 (549)
.+. ...+|+|+++.+ .|...+.+.|.+
T Consensus 338 ~g~---~~~diAVL~R~~~~~~~~i~~~L~~ 365 (1166)
T 3u4q_B 338 KGY---RYKDVAILARQPEDYKDMVKEVFAD 365 (1166)
T ss_dssp SCC---CGGGEEEEESCGGGTHHHHHHHHHH
T ss_pred cCC---ChhheEEEeCChHHHHHHHHHHHHH
Confidence 332 234899999997 588888888854
No 16
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=89.87 E-value=0.24 Score=58.97 Aligned_cols=59 Identities=12% Similarity=-0.025 Sum_probs=43.2
Q ss_pred CCeEEEecccCCCCccccEEEEEccccC----CCCCcccCCC------------------------CCcceeeccccccc
Q 008899 386 GFTVKVKSIDGFQGGEEDIIIISTVRCN----AGGSIGFISK------------------------PQRVNVALTRARHC 437 (549)
Q Consensus 386 ~~~v~V~TVd~fQG~E~DiVIlS~vrs~----~~~~~GFl~d------------------------~~RlNVAlTRAR~~ 437 (549)
...|.|+|+|..+|.|+++|++..+-.. ....-||+.+ ++.++||+|||+..
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~ 664 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDR 664 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSE
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCe
Confidence 4579999999999999999999876332 1112233321 23389999999999
Q ss_pred eEEEeeh
Q 008899 438 LWILGNE 444 (549)
Q Consensus 438 LiIiGn~ 444 (549)
|++....
T Consensus 665 L~lsy~~ 671 (1166)
T 3u4q_B 665 LYVSYPI 671 (1166)
T ss_dssp EEEEEES
T ss_pred EEEEEec
Confidence 9998553
No 17
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=89.48 E-value=0.21 Score=59.33 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=52.6
Q ss_pred CCCeEEEecccCCCCccccEEEEEccccCC----CCCccc--------CCC-------CCcceeeccccccceEEEeehh
Q 008899 385 DGFTVKVKSIDGFQGGEEDIIIISTVRCNA----GGSIGF--------ISK-------PQRVNVALTRARHCLWILGNER 445 (549)
Q Consensus 385 ~~~~v~V~TVd~fQG~E~DiVIlS~vrs~~----~~~~GF--------l~d-------~~RlNVAlTRAR~~LiIiGn~~ 445 (549)
....|.+.|+|...|.|+|+|++..+-... ...-|| ..+ ++.++||+||||+.|++.....
T Consensus 655 ~~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~ 734 (1122)
T 1w36_C 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 (1122)
T ss_dssp TSSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECB
T ss_pred CCCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCC
Confidence 356899999999999999999997663221 111223 112 3448999999999999987643
Q ss_pred hh-h----ccchHHHHHHHHHHh
Q 008899 446 TL-I----SSESIWGALVCDAKA 463 (549)
Q Consensus 446 tL-~----~~~~~w~~li~~~~~ 463 (549)
.. . ........+..++..
T Consensus 735 ~~~~g~~~~PSrfL~eL~~~l~~ 757 (1122)
T 1w36_C 735 SIQDNSERFPSVLVQELIDYIGQ 757 (1122)
T ss_dssp CSSSCCBCCBCHHHHHHHHHHHT
T ss_pred cCCCCCcCCCCHHHHHHHHHHHH
Confidence 21 1 113456666666654
No 18
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.69 E-value=0.98 Score=42.24 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCChhHHhHhhh--hcCCCeEEEEcCCCCCC
Q 008899 196 KPLNFLVIDEAAQLKESESTIPLQ--LAGINHAVLIGDECQLP 236 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL~--l~~~~~vILvGD~~QLp 236 (549)
.+=+++|||||++++--+++..+. .....++||+||..|.+
T Consensus 120 tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG 162 (189)
T 2l8b_A 120 TPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTG 162 (189)
T ss_dssp CCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTC
T ss_pred CCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCccccc
Confidence 356899999999999888776654 23457999999999874
No 19
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=79.37 E-value=1.6 Score=41.74 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=27.7
Q ss_pred CCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhH
Q 008899 176 RASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESE 213 (549)
Q Consensus 176 ~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e 213 (549)
.++|+++|..............+++||||||..+....
T Consensus 171 ~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~ 208 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAES 208 (237)
T ss_dssp CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTT
T ss_pred cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChH
Confidence 57899999877654222223469999999999997654
No 20
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.38 E-value=2.3 Score=38.87 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=29.6
Q ss_pred HHHHHhcCCcEEEEccccchhhc---ccCCCCCCEEEEEcCCCCC
Q 008899 169 LEDFCFKRASLFFSTASSSYKLH---SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 169 i~~~~l~~a~vI~~T~~sa~~l~---~~~~~~fd~VIVDEAsq~~ 210 (549)
....+...++|+++|+....... ......+++||||||..+.
T Consensus 113 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 113 QKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred HHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 34445578999999998765422 1234578999999997653
No 21
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=76.85 E-value=1.5 Score=42.81 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=30.3
Q ss_pred hcCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhH
Q 008899 174 FKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESE 213 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e 213 (549)
...++|+++|..+..+........+++||||||..+....
T Consensus 202 ~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~ 241 (282)
T 1rif_A 202 KNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS 241 (282)
T ss_dssp CTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHH
T ss_pred ccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCccc
Confidence 4678999999987665322234578999999999998664
No 22
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=68.98 E-value=1.5 Score=40.22 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=24.7
Q ss_pred HhcCCcEEEEccccchhhcc---------cCCCCCCEEEEEcCCCCChh
Q 008899 173 CFKRASLFFSTASSSYKLHS---------VEIKPLNFLVIDEAAQLKES 212 (549)
Q Consensus 173 ~l~~a~vI~~T~~sa~~l~~---------~~~~~fd~VIVDEAsq~~e~ 212 (549)
+...++|+++|+........ .....+++||||||..+...
T Consensus 129 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 129 VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred hccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 34579999999987765221 12347899999999988543
No 23
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=64.79 E-value=3.6 Score=43.11 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=28.5
Q ss_pred CCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhHH
Q 008899 176 RASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESES 214 (549)
Q Consensus 176 ~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e~ 214 (549)
.++|+++|..............+++||||||..+..+..
T Consensus 171 ~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~ 209 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESY 209 (472)
T ss_dssp CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTT
T ss_pred cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHH
Confidence 578999998876653222224699999999999876543
No 24
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=62.88 E-value=9.6 Score=34.60 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=29.1
Q ss_pred HHHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCCh
Q 008899 171 DFCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 171 ~~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~e 211 (549)
..+...++|+++|+........ .....+++||||||..+..
T Consensus 117 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 117 MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 3445789999999987654222 2245789999999986544
No 25
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.13 E-value=4.1 Score=38.01 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=28.7
Q ss_pred HHHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCC
Q 008899 171 DFCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 171 ~~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~ 210 (549)
..+.++++|+++|+.....+.. .....+++||||||..+.
T Consensus 138 ~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 180 (228)
T 3iuy_A 138 EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML 180 (228)
T ss_dssp HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHH
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHh
Confidence 4456789999999987665222 224578999999997544
No 26
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=61.87 E-value=6.1 Score=44.05 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCCCChhHHhHhhhhcCCCeEEEEcCCCCCCccccccccccccCcccHHHHHHh--cCCCcccceecccc
Q 008899 196 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVASKISDEAGFGRSLFERLTS--LNHSKHLLNVQYRM 273 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL~l~~~~~vILvGD~~QLpPiv~s~~~~~~~~~~SLfeRl~~--~~~~~~~L~~qYRm 273 (549)
...|+||||||++++.+-.-..+. .-.++++++.-.+... -|+++-=+... .....+.|++-.|-
T Consensus 254 ~~~dlliVDEAAaIp~pll~~ll~--~~~~v~~~tTv~GYEG-----------tGrgf~lk~~~~L~~~~~~~L~~piR~ 320 (671)
T 2zpa_A 254 EQADWLVVDEAAAIPAPLLHQLVS--RFPRTLLTTTVQGYEG-----------TGRGFLLKFCARFPHLHRFELQQPIRW 320 (671)
T ss_dssp CCCSEEEEETGGGSCHHHHHHHHT--TSSEEEEEEEBSSTTB-----------BCHHHHHHHHHTSTTCEEEECCSCSSS
T ss_pred ccCCEEEEEchhcCCHHHHHHHHh--hCCeEEEEecCCcCCC-----------cCcccccccHhhcCCCcEEEccCceec
Confidence 458999999999999887555443 3468999888776432 23333112221 23445667777666
Q ss_pred --CccccccCcccc
Q 008899 274 --HPSISLFPNLQF 285 (549)
Q Consensus 274 --hp~I~~f~n~~f 285 (549)
+-.|-.|.+..+
T Consensus 321 a~~DplE~wl~~~l 334 (671)
T 2zpa_A 321 AQGCPLEKMVSEAL 334 (671)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhh
Confidence 336666655443
No 27
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=61.63 E-value=2.5 Score=44.67 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=41.1
Q ss_pred hcCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhHHh--Hhh-hhcCCCeEEEEcCCCC
Q 008899 174 FKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESEST--IPL-QLAGINHAVLIGDECQ 234 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e~l--ipL-~l~~~~~vILvGD~~Q 234 (549)
...++||++|..............|++||||||..+....+. -.+ .+....++.|-|=|.|
T Consensus 126 ~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 126 LEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp GGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCST
T ss_pred ccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCC
Confidence 457899999988776533334557999999999998654311 111 1233457888888866
No 28
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=61.35 E-value=3.2 Score=39.31 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=25.9
Q ss_pred cCCcEEEEccccchhhcccCCCCCCEEEEEcCCCC
Q 008899 175 KRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQL 209 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~ 209 (549)
.+++|++||+.............+++||||||-..
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHER 188 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSC
T ss_pred CCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccC
Confidence 45889999986655432224568999999999875
No 29
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=60.32 E-value=8.9 Score=36.58 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=29.6
Q ss_pred HHHHhcCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCCCh
Q 008899 170 EDFCFKRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 170 ~~~~l~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~~e 211 (549)
...+...++|+++|+....... ......+++||||||-.+..
T Consensus 155 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 155 SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence 3445678999999998765521 12345789999999975543
No 30
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=59.99 E-value=5.5 Score=42.13 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=32.0
Q ss_pred HhcCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhHHh
Q 008899 173 CFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESEST 215 (549)
Q Consensus 173 ~l~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e~l 215 (549)
....++|+++|..+...........+++||||||..+......
T Consensus 201 ~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~ 243 (510)
T 2oca_A 201 YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSIS 243 (510)
T ss_dssp GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHH
T ss_pred cccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHH
Confidence 4567999999998766532233457899999999999876533
No 31
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=59.14 E-value=4.5 Score=37.52 Aligned_cols=38 Identities=13% Similarity=0.320 Sum_probs=26.8
Q ss_pred HhcCCcEEEEccccchhhc---ccCCCCCCEEEEEcCCCCC
Q 008899 173 CFKRASLFFSTASSSYKLH---SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 173 ~l~~a~vI~~T~~sa~~l~---~~~~~~fd~VIVDEAsq~~ 210 (549)
.+.+++|+++|+....... ......+++||||||..+.
T Consensus 128 ~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 128 GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp -CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHh
Confidence 3556999999998765421 1224578999999997653
No 32
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=57.23 E-value=6.4 Score=43.46 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCcEEEEccccchhh-cccCCCCCCEEEEEcCCCCChhHH--hHhh-hhcCCCeEEEEcCCCCC
Q 008899 176 RASLFFSTASSSYKL-HSVEIKPLNFLVIDEAAQLKESES--TIPL-QLAGINHAVLIGDECQL 235 (549)
Q Consensus 176 ~a~vI~~T~~sa~~l-~~~~~~~fd~VIVDEAsq~~e~e~--lipL-~l~~~~~vILvGD~~QL 235 (549)
.++|+++|....... .......|++||+|||..+..+.+ ...+ .+....++.|.|=|-|-
T Consensus 170 ~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN 233 (644)
T 1z3i_X 170 PTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQN 233 (644)
T ss_dssp SCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGG
T ss_pred CCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccC
Confidence 478999998776542 223345899999999999965432 2222 23455789999998774
No 33
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.87 E-value=11 Score=35.57 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCcEEEEccccchhhc---ccCCCCCCEEEEEcCCCCC
Q 008899 167 LLLEDFCFKRASLFFSTASSSYKLH---SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 167 ~~i~~~~l~~a~vI~~T~~sa~~l~---~~~~~~fd~VIVDEAsq~~ 210 (549)
..-...+...++|+++|+.....+. ......+++||||||..+.
T Consensus 143 ~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 189 (242)
T 3fe2_A 143 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML 189 (242)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHH
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHh
Confidence 3334445567999999998765522 2234578999999997544
No 34
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=56.34 E-value=12 Score=40.58 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=23.9
Q ss_pred hcCCcEEEEccccchhh-------cccCCCCCCEEEEEcCCCCChh
Q 008899 174 FKRASLFFSTASSSYKL-------HSVEIKPLNFLVIDEAAQLKES 212 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l-------~~~~~~~fd~VIVDEAsq~~e~ 212 (549)
-..++|+++|....... .......+++||||||..+...
T Consensus 272 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 272 VKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR 317 (590)
T ss_dssp CSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----
T ss_pred CCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc
Confidence 35789999999877652 1223456999999999998753
No 35
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=56.25 E-value=7.1 Score=37.04 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCC
Q 008899 170 EDFCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 170 ~~~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~ 210 (549)
...+...++||++|+........ .....+++||||||..+.
T Consensus 144 ~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 187 (253)
T 1wrb_A 144 IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 187 (253)
T ss_dssp HHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHH
T ss_pred HHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHH
Confidence 34455788999999987765321 234578999999997653
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=55.63 E-value=8.4 Score=40.71 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=30.9
Q ss_pred HHHhcCCcEEEEccccchhhccc----CCCCCCEEEEEcCCCCChh
Q 008899 171 DFCFKRASLFFSTASSSYKLHSV----EIKPLNFLVIDEAAQLKES 212 (549)
Q Consensus 171 ~~~l~~a~vI~~T~~sa~~l~~~----~~~~fd~VIVDEAsq~~e~ 212 (549)
..+...++||+||+......... ....+++||||||..+...
T Consensus 100 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~ 145 (556)
T 4a2p_A 100 EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 145 (556)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT
T ss_pred HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc
Confidence 34456799999999987653221 3457899999999988754
No 37
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=54.69 E-value=4.7 Score=37.84 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCC
Q 008899 171 DFCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQL 209 (549)
Q Consensus 171 ~~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~ 209 (549)
...+.+++|+++|+.....+.. .....+++||||||..+
T Consensus 137 ~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 137 KTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp HHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred HHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 3456789999999987765321 22346899999999765
No 38
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=54.12 E-value=12 Score=35.97 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCCC
Q 008899 167 LLLEDFCFKRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 167 ~~i~~~~l~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~~ 210 (549)
......+...++||++|+....... ......+++||||||-.+.
T Consensus 167 ~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~ 214 (262)
T 3ly5_A 167 SAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 214 (262)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHH
T ss_pred HHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHh
Confidence 3334445567999999987665421 1234578999999997644
No 39
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=53.88 E-value=5.1 Score=40.96 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHhcCCcEEEEccccchhhc---ccCCCCCCEEEEEcCCCCCh
Q 008899 172 FCFKRASLFFSTASSSYKLH---SVEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 172 ~~l~~a~vI~~T~~sa~~l~---~~~~~~fd~VIVDEAsq~~e 211 (549)
....+++|++||........ ......+++||||||..+..
T Consensus 97 ~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 97 KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 34457899999998776522 22355799999999999874
No 40
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=52.70 E-value=10 Score=34.94 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=26.5
Q ss_pred cCCcEEEEccccchhhc---ccCCCCCCEEEEEcCCCCCh
Q 008899 175 KRASLFFSTASSSYKLH---SVEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~---~~~~~~fd~VIVDEAsq~~e 211 (549)
..++|+++|+....... ......+++||||||..+.+
T Consensus 133 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 133 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 35799999998765421 12345789999999987643
No 41
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.69 E-value=16 Score=36.85 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCC
Q 008899 169 LEDFCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 169 i~~~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~ 210 (549)
-...+...++|+++|+........ .....+++||||||..+.
T Consensus 144 ~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 144 QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp HHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHH
T ss_pred HHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhh
Confidence 334456789999999987765222 234578999999998654
No 42
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=51.45 E-value=11 Score=38.36 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=27.0
Q ss_pred HHHhc-CCcEEEEccccchh-hcccCCCCCCEEEEEcCCC
Q 008899 171 DFCFK-RASLFFSTASSSYK-LHSVEIKPLNFLVIDEAAQ 208 (549)
Q Consensus 171 ~~~l~-~a~vI~~T~~sa~~-l~~~~~~~fd~VIVDEAsq 208 (549)
..+.. .++|+++|+..... +.......+++||||||..
T Consensus 111 ~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~ 150 (414)
T 3oiy_A 111 KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDA 150 (414)
T ss_dssp HHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHH
T ss_pred HHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHh
Confidence 33444 49999999987754 2223445899999999953
No 43
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=51.13 E-value=6.9 Score=36.66 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=27.7
Q ss_pred HhcCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCCC
Q 008899 173 CFKRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 173 ~l~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~~ 210 (549)
.+.+++||++|+....... ......+++||||||..+.
T Consensus 143 ~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 143 RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHH
T ss_pred hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHh
Confidence 3478999999998775421 1234578999999998654
No 44
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=50.47 E-value=21 Score=35.93 Aligned_cols=43 Identities=14% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHHHHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCC
Q 008899 168 LLEDFCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 168 ~i~~~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~ 210 (549)
.+.......++|++||+........ .....+++||||||..+.
T Consensus 151 ~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~ 196 (414)
T 3eiq_A 151 EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 196 (414)
T ss_dssp HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHH
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhh
Confidence 3344444788999999887654221 234568999999998754
No 45
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=47.90 E-value=5.8 Score=36.76 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=25.7
Q ss_pred cCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCC
Q 008899 175 KRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~ 210 (549)
..++|+++|+........ .....+++||||||..+.
T Consensus 125 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 125 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 478899999987655221 123468999999997654
No 46
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=47.65 E-value=9.3 Score=37.69 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=27.9
Q ss_pred hcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCCh
Q 008899 174 FKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~e 211 (549)
+.+++|+++|+........ .....+++||||||..+..
T Consensus 121 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 121 LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 4589999999987765322 2245789999999987643
No 47
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=47.18 E-value=7.3 Score=41.08 Aligned_cols=42 Identities=7% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHhcCCcEEEEccccchhhccc----CCCCCCEEEEEcCCCCChh
Q 008899 171 DFCFKRASLFFSTASSSYKLHSV----EIKPLNFLVIDEAAQLKES 212 (549)
Q Consensus 171 ~~~l~~a~vI~~T~~sa~~l~~~----~~~~fd~VIVDEAsq~~e~ 212 (549)
..+...++|++||+......... ....+++||||||..+...
T Consensus 97 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 97 QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTT
T ss_pred HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCc
Confidence 34456799999999987663222 2346899999999998754
No 48
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=46.64 E-value=9 Score=36.06 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=25.0
Q ss_pred CCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCC
Q 008899 176 RASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 176 ~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~ 210 (549)
.++|+++|+........ .....+++||||||-.+.
T Consensus 149 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 186 (237)
T 3bor_A 149 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 186 (237)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHH
T ss_pred CCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhh
Confidence 38999999877554221 234568999999997653
No 49
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=46.49 E-value=7.6 Score=36.56 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=27.1
Q ss_pred hcCCcEEEEccccchhhcc-----cCCCCCCEEEEEcCCCCCh
Q 008899 174 FKRASLFFSTASSSYKLHS-----VEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~-----~~~~~fd~VIVDEAsq~~e 211 (549)
...++||++|+.....+.. .....+++||||||..+.+
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 4578999999887754221 2345789999999976543
No 50
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=45.93 E-value=25 Score=35.29 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCChhH
Q 008899 172 FCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLKESE 213 (549)
Q Consensus 172 ~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~e~e 213 (549)
.....++|++||+........ .....+++||||||..+....
T Consensus 135 ~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 135 RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 345788999999887654221 234578999999998766544
No 51
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=44.22 E-value=5.9 Score=44.98 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=40.5
Q ss_pred cCCcEEEEccccchhh-cccCCCCCCEEEEEcCCCCChhH--HhHhh-hhcCCCeEEEEcCCCCC
Q 008899 175 KRASLFFSTASSSYKL-HSVEIKPLNFLVIDEAAQLKESE--STIPL-QLAGINHAVLIGDECQL 235 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l-~~~~~~~fd~VIVDEAsq~~e~e--~lipL-~l~~~~~vILvGD~~QL 235 (549)
..++||++|.....+. .......|++||||||..+..+. ..-.+ .+....++.|.|=|-|-
T Consensus 344 ~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN 408 (800)
T 3mwy_W 344 MKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQN 408 (800)
T ss_dssp CCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSS
T ss_pred ccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCC
Confidence 4577999998877652 22334479999999999985332 22222 23344688999988763
No 52
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=43.89 E-value=9.8 Score=37.09 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=27.8
Q ss_pred HhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCCh
Q 008899 173 CFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 173 ~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~e 211 (549)
.+.+++|+++|+........ .....+++||||||..+.+
T Consensus 102 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 102 RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 34579999999987665322 1234689999999986543
No 53
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=43.46 E-value=31 Score=35.68 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=30.6
Q ss_pred HHHHHhcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCCh
Q 008899 169 LEDFCFKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 169 i~~~~l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~e 211 (549)
-...+...++|+++|+.....+.. .....+++||+|||-.+..
T Consensus 172 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 172 QNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTS
T ss_pred HHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhc
Confidence 344455789999999987765322 2345789999999987653
No 54
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=42.50 E-value=5.1 Score=39.70 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.2
Q ss_pred hcCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~~ 210 (549)
...++||+||+.....+. ......+++||||||-.+.
T Consensus 208 ~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~ 248 (300)
T 3fmo_B 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248 (300)
T ss_dssp CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHh
Confidence 456789999998765422 1223478999999997644
No 55
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=42.47 E-value=11 Score=37.56 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=26.9
Q ss_pred cCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCCh
Q 008899 175 KRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~e 211 (549)
.+++|+++|+........ .....+++||||||..+..
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred CCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 478999999987654221 2345799999999986543
No 56
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=41.39 E-value=11 Score=37.65 Aligned_cols=37 Identities=14% Similarity=0.350 Sum_probs=27.1
Q ss_pred hcCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~ 210 (549)
+.+++|+++|+........ .....+++||||||..+.
T Consensus 136 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 136 LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp HHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 4479999999987655221 224578999999998753
No 57
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=40.99 E-value=28 Score=34.71 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=27.5
Q ss_pred cCCcEEEEccccchhhcc---cCCCCCCEEEEEcCCCCCh
Q 008899 175 KRASLFFSTASSSYKLHS---VEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~~---~~~~~fd~VIVDEAsq~~e 211 (549)
..++|+++|+........ .....+++||||||..+..
T Consensus 127 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 127 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred CCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 457999999987765221 2345799999999987765
No 58
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=40.34 E-value=16 Score=34.68 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCChhHHhHhhh-hcCCCeEEEEcC
Q 008899 197 PLNFLVIDEAAQLKESESTIPLQ-LAGINHAVLIGD 231 (549)
Q Consensus 197 ~fd~VIVDEAsq~~e~e~lipL~-l~~~~~vILvGD 231 (549)
.+|+|+||||+-+++...-.... ......+|+.|=
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEec
Confidence 69999999999886544211111 123467888774
No 59
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=39.24 E-value=19 Score=33.36 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCChhHHhHhhh--hcCCCeEEEEcC
Q 008899 197 PLNFLVIDEAAQLKESESTIPLQ--LAGINHAVLIGD 231 (549)
Q Consensus 197 ~fd~VIVDEAsq~~e~e~lipL~--l~~~~~vILvGD 231 (549)
.+|+||||||+-+++.. +--+. ......+|+.|=
T Consensus 81 ~~dvViIDEaqfl~~~~-v~~l~~l~~~~~~Vi~~Gl 116 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEI-VEIVNKIAESGRRVICAGL 116 (191)
T ss_dssp TCSEEEECSGGGSCTHH-HHHHHHHHHTTCEEEEEEC
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHhCCCEEEEEec
Confidence 58999999999886443 22221 123457888884
No 60
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=39.11 E-value=11 Score=41.58 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=29.5
Q ss_pred HhcCCcEEEEccccchhhccc----CCCCCCEEEEEcCCCCChh
Q 008899 173 CFKRASLFFSTASSSYKLHSV----EIKPLNFLVIDEAAQLKES 212 (549)
Q Consensus 173 ~l~~a~vI~~T~~sa~~l~~~----~~~~fd~VIVDEAsq~~e~ 212 (549)
+...++||+||+......... ....+++||||||..+...
T Consensus 108 ~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 108 IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred hccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc
Confidence 445799999999887653221 2346899999999998644
No 61
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=38.85 E-value=11 Score=41.43 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHhcCCcEEEEccccchhhc---------ccCCCCCCEEEEEcCCCCC
Q 008899 172 FCFKRASLFFSTASSSYKLH---------SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 172 ~~l~~a~vI~~T~~sa~~l~---------~~~~~~fd~VIVDEAsq~~ 210 (549)
.+...++||+||+....... ......+++||||||..+.
T Consensus 102 ~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~ 149 (699)
T 4gl2_A 102 EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 149 (699)
T ss_dssp HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCB
T ss_pred hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccC
Confidence 34478999999998877522 1223478999999998764
No 62
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=38.26 E-value=19 Score=36.33 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHhcCCcEEEEccccchhhc---ccCCCCCCEEEEEcCCCCCh
Q 008899 171 DFCFKRASLFFSTASSSYKLH---SVEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 171 ~~~l~~a~vI~~T~~sa~~l~---~~~~~~fd~VIVDEAsq~~e 211 (549)
..+-..++|+++|+....... ......+++||||||..+..
T Consensus 150 ~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 150 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred HHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 344467899999997765422 12345789999999986543
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=37.67 E-value=20 Score=39.94 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=26.3
Q ss_pred hcCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~ 210 (549)
-..++|+++|+.............+++||||||.++.
T Consensus 295 ~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~ 331 (666)
T 3o8b_A 295 TTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTD 331 (666)
T ss_dssp CCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCS
T ss_pred cCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcC
Confidence 4578999999887643233334579999999994443
No 64
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=37.23 E-value=21 Score=34.41 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCChhHHhHhhhhcCCCeEEEEcC
Q 008899 196 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGD 231 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e~lipL~l~~~~~vILvGD 231 (549)
..+|+|+||||+-+....-++-+......++|+.|=
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECC
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEec
Confidence 468999999999887533222222123467888774
No 65
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=37.09 E-value=8.3 Score=38.89 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=25.7
Q ss_pred hcCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCC
Q 008899 174 FKRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQL 209 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~ 209 (549)
...++|+++|+....... ......+++||||||..+
T Consensus 141 ~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~ 180 (412)
T 3fht_A 141 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 180 (412)
T ss_dssp CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHH
T ss_pred cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHH
Confidence 346789999998776532 122346899999999754
No 66
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=35.57 E-value=30 Score=32.31 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=27.8
Q ss_pred CCCCEEEEEcC------CCCChhHHhHhhh-hcCCCeEEEEcCC
Q 008899 196 KPLNFLVIDEA------AQLKESESTIPLQ-LAGINHAVLIGDE 232 (549)
Q Consensus 196 ~~fd~VIVDEA------sq~~e~e~lipL~-l~~~~~vILvGD~ 232 (549)
..+|+||+||. +.+++.+.+-.+. .+...++|+.|-.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 57999999998 6778777665553 3445689998865
No 67
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=35.26 E-value=17 Score=40.98 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHhcCCcEEEEccccchhhccc----CCCCCCEEEEEcCCCCChh
Q 008899 171 DFCFKRASLFFSTASSSYKLHSV----EIKPLNFLVIDEAAQLKES 212 (549)
Q Consensus 171 ~~~l~~a~vI~~T~~sa~~l~~~----~~~~fd~VIVDEAsq~~e~ 212 (549)
..+...++||+||+......... ....+++||||||..+...
T Consensus 341 ~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 341 EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 34567899999999877653222 2335799999999888754
No 68
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=35.09 E-value=23 Score=33.10 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChhHH-hHhhhhcCCCeEEEEc
Q 008899 197 PLNFLVIDEAAQLKESES-TIPLQLAGINHAVLIG 230 (549)
Q Consensus 197 ~fd~VIVDEAsq~~e~e~-lipL~l~~~~~vILvG 230 (549)
.+|+|+||||+-+.+..- +--+. -..+++|+.|
T Consensus 91 ~~DvIlIDEaQFfk~~ve~~~~L~-~~gk~VI~~G 124 (195)
T 1w4r_A 91 GVAVIGIDEGQFFPDIVEFCEAMA-NAGKTVIVAA 124 (195)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHH-HTTCEEEEEE
T ss_pred CCCEEEEEchhhhHHHHHHHHHHH-HCCCeEEEEe
Confidence 589999999998843221 11122 2346888777
No 69
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=34.99 E-value=24 Score=33.45 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCChhH--HhHhhhhcCCCeEEEEcC
Q 008899 196 KPLNFLVIDEAAQLKESE--STIPLQLAGINHAVLIGD 231 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e--~lipL~l~~~~~vILvGD 231 (549)
..+|+||||||+-+++.. .+.-+. ....++|++|=
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~-~~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILA-ENGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHH-HTTCEEEEECC
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHH-hCCCeEEEEec
Confidence 468999999998776432 222222 23468999885
No 70
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=32.38 E-value=18 Score=38.50 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=27.5
Q ss_pred hcCCcEEEEccccchhhc---ccCCCCCCEEEEEcCCCCCh
Q 008899 174 FKRASLFFSTASSSYKLH---SVEIKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~---~~~~~~fd~VIVDEAsq~~e 211 (549)
...++||++|+....... ......+++||||||..+..
T Consensus 233 ~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 233 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred cCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 347899999988765521 12345799999999986654
No 71
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=31.97 E-value=19 Score=38.08 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=53.4
Q ss_pred cEEEEccchHHHHHHHHHHhhhhcCCCCCeEEEecccCC--CCc-----cccEEEEEccccCCCCCcccCCCCCcce--e
Q 008899 359 SIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGF--QGG-----EEDIIIISTVRCNAGGSIGFISKPQRVN--V 429 (549)
Q Consensus 359 sIgIITPY~aQ~~~I~~~L~~~~~~~~~~~v~V~TVd~f--QG~-----E~DiVIlS~vrs~~~~~~GFl~d~~RlN--V 429 (549)
.+.|+||-++-+..+++.+.+. .........|.|+|+| ++. +.|++|++=+.- -+...+. .
T Consensus 186 ~~lVlTpT~~aa~~l~~kl~~~-~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm---------~~~~~l~~l~ 255 (446)
T 3vkw_A 186 EDLILVPGRQAAEMIRRRANAS-GIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLM---------LHTGCVNFLV 255 (446)
T ss_dssp TCEEEESCHHHHHHHHHHHTTT-SCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGG---------SCHHHHHHHH
T ss_pred CeEEEeCCHHHHHHHHHHhhhc-CccccccceEEEeHHhhcCCCCCCCCcCCEEEEeCccc---------CCHHHHHHHH
Confidence 5799999999999999998643 1112334679999987 332 389999975431 1222222 2
Q ss_pred eccccccceEEEeehhhhhc
Q 008899 430 ALTRARHCLWILGNERTLIS 449 (549)
Q Consensus 430 AlTRAR~~LiIiGn~~tL~~ 449 (549)
++.++ ..++++|+..-+..
T Consensus 256 ~~~~~-~~vilvGD~~Qlp~ 274 (446)
T 3vkw_A 256 EMSLC-DIAYVYGDTQQIPY 274 (446)
T ss_dssp HHTTC-SEEEEEECTTSCCC
T ss_pred HhCCC-CEEEEecCcccccC
Confidence 34455 78999999887743
No 72
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=30.51 E-value=24 Score=32.09 Aligned_cols=35 Identities=20% Similarity=0.041 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCChhH--HhHhhhhcCCCeEEEEcC
Q 008899 196 KPLNFLVIDEAAQLKESE--STIPLQLAGINHAVLIGD 231 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e--~lipL~l~~~~~vILvGD 231 (549)
..+|+||||||+.+++.. .+..+ ......+|+.|=
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l-~~~~~~Vi~~Gl 111 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDL-LDRGIDVFCAGL 111 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHH-HHTTCEEEEEEE
T ss_pred CCCCEEEEECcccCCHHHHHHHHHH-HHCCCCEEEEee
Confidence 368999999998884322 12212 123456777775
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=29.46 E-value=18 Score=39.01 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHHhcCCcEEEEccccchhh--cc-cC-CCCCCEEEEEcCCCCCh
Q 008899 170 EDFCFKRASLFFSTASSSYKL--HS-VE-IKPLNFLVIDEAAQLKE 211 (549)
Q Consensus 170 ~~~~l~~a~vI~~T~~sa~~l--~~-~~-~~~fd~VIVDEAsq~~e 211 (549)
.+.....|+||+||..-.... .. .. ....++||||||.++.+
T Consensus 142 ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 142 LLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 345668899999998865541 11 11 13567899999999877
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=29.20 E-value=33 Score=39.74 Aligned_cols=62 Identities=23% Similarity=0.179 Sum_probs=39.2
Q ss_pred hcCCcEEEEccccchhh----cccCCCCCCEEEEEcCCCCChhH--------HhHhhhhcCCCeEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKL----HSVEIKPLNFLVIDEAAQLKESE--------STIPLQLAGINHAVLIGDECQL 235 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l----~~~~~~~fd~VIVDEAsq~~e~e--------~lipL~l~~~~~vILvGD~~QL 235 (549)
+...+||+||.....+. .......|++||||||..+.... .+..+.-.....+.|-|=|.|-
T Consensus 246 ~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n 319 (968)
T 3dmq_A 246 FDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQL 319 (968)
T ss_dssp STTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSS
T ss_pred cccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccC
Confidence 34678999998766431 11224579999999999996422 2332221233567888877663
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=28.63 E-value=63 Score=36.54 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=24.6
Q ss_pred cCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCC
Q 008899 175 KRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~ 210 (549)
..++||++|...... ......+++||||||....
T Consensus 470 g~~~IvVgT~~ll~~--~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 470 GQIDVVIGTHALIQE--DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp SCCCEEEECTTHHHH--CCCCSCCCEEEEESCCCC-
T ss_pred CCCCEEEECHHHHhh--hhhccCCceEEecccchhh
Confidence 359999999854432 2335578999999998863
No 76
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=27.93 E-value=24 Score=37.53 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=27.0
Q ss_pred hcCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~~ 210 (549)
-..++||+||+....... ......+++||||||..+.
T Consensus 199 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 239 (563)
T 3i5x_A 199 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLL 239 (563)
T ss_dssp HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHT
T ss_pred cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHh
Confidence 458999999998765421 1124579999999998765
No 77
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=27.34 E-value=48 Score=36.37 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCCCCCccEEEEccchHHHHHHHHHHhhhhcCCCCCeEEEecccCCC
Q 008899 339 VVIKILQKLYKAWVGSKQKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVKVKSIDGFQ 398 (549)
Q Consensus 339 ~V~~lv~~L~~~~~~~~~~~sIgIITPY~aQ~~~I~~~L~~~~~~~~~~~v~V~TVd~fQ 398 (549)
.++..+.+|+..... ....|.+||+-++-+..+++.+...........+.|+|+|+|=
T Consensus 31 ~l~~ri~~ll~~~~~--~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~~v~Tfhs~~ 88 (673)
T 1uaa_A 31 VITNKIAHLIRGCGY--QARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLG 88 (673)
T ss_dssp HHHHHHHHHHHHHCC--CGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHHHH
T ss_pred HHHHHHHHHHHhcCC--CHHHeEEEeccHHHHHHHHHHHHHHcCcccccCCEEEeHHHHH
Confidence 344555556654221 2347999999999999999999776543334568999999873
No 78
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=27.29 E-value=14 Score=38.65 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=25.4
Q ss_pred cCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCCC
Q 008899 175 KRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~~ 210 (549)
..++||++|+....... ......+++||||||..+.
T Consensus 209 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHH
T ss_pred CCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHh
Confidence 35689999998775422 1223478999999998543
No 79
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=26.13 E-value=19 Score=41.62 Aligned_cols=40 Identities=8% Similarity=0.167 Sum_probs=29.2
Q ss_pred HhcCCcEEEEccccchhhccc----CCCCCCEEEEEcCCCCChh
Q 008899 173 CFKRASLFFSTASSSYKLHSV----EIKPLNFLVIDEAAQLKES 212 (549)
Q Consensus 173 ~l~~a~vI~~T~~sa~~l~~~----~~~~fd~VIVDEAsq~~e~ 212 (549)
+...++||++|+......... ....+++||||||..+...
T Consensus 343 ~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 343 VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred hccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 445789999999887653222 2335899999999887754
No 80
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=25.16 E-value=29 Score=37.30 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=26.9
Q ss_pred hcCCcEEEEccccchhhc----ccCCCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLH----SVEIKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~----~~~~~~fd~VIVDEAsq~~ 210 (549)
-..++||+||+....... ......+++||||||..+.
T Consensus 148 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 188 (579)
T 3sqw_A 148 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLL 188 (579)
T ss_dssp HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHT
T ss_pred cCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhh
Confidence 357999999998765421 1224579999999998765
No 81
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=23.07 E-value=83 Score=37.18 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=26.8
Q ss_pred cCCcEEEEccccchhhcccCCCCCCEEEEEcCCCCChhH
Q 008899 175 KRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESE 213 (549)
Q Consensus 175 ~~a~vI~~T~~sa~~l~~~~~~~fd~VIVDEAsq~~e~e 213 (549)
..++||++|...... ......+++||||||.......
T Consensus 705 g~~dIvV~T~~ll~~--~~~~~~l~lvIiDEaH~~g~~~ 741 (1151)
T 2eyq_A 705 GKIDILIGTHKLLQS--DVKFKDLGLLIVDEEHRFGVRH 741 (1151)
T ss_dssp TCCSEEEECTHHHHS--CCCCSSEEEEEEESGGGSCHHH
T ss_pred CCCCEEEECHHHHhC--CccccccceEEEechHhcChHH
Confidence 369999999864432 2334578999999999876543
No 82
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=22.95 E-value=31 Score=40.74 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.1
Q ss_pred HHHHHhc-CCcEEEEccccchhh-cccCCCCCCEEEEEcCC
Q 008899 169 LEDFCFK-RASLFFSTASSSYKL-HSVEIKPLNFLVIDEAA 207 (549)
Q Consensus 169 i~~~~l~-~a~vI~~T~~sa~~l-~~~~~~~fd~VIVDEAs 207 (549)
....+.. .++||++|+.....+ .......+++||||||.
T Consensus 166 ~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 166 FEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVD 206 (1104)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHH
T ss_pred HHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCC
Confidence 3344444 499999999877542 22334589999999994
No 83
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=22.87 E-value=88 Score=29.68 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCChhH--HhHhhhhcCCCeEEEEc
Q 008899 196 KPLNFLVIDEAAQLKESE--STIPLQLAGINHAVLIG 230 (549)
Q Consensus 196 ~~fd~VIVDEAsq~~e~e--~lipL~l~~~~~vILvG 230 (549)
.++|+|+||||+-+++.. .+.-+. .....||..|
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la-~~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLS-ADGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHH-HTTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHH-HCCCEEEEee
Confidence 579999999999888532 222222 1336777666
No 84
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.06 E-value=25 Score=38.99 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=26.8
Q ss_pred hcCCcEEEEccccchhhcccC---CCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLHSVE---IKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~~~---~~~fd~VIVDEAsq~~ 210 (549)
+.+++|++||+.....+.... ...+++||||||..+.
T Consensus 112 ~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 112 LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 468999999997765422211 3468999999998764
No 85
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=21.38 E-value=30 Score=38.28 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=26.8
Q ss_pred hcCCcEEEEccccchhhcccC---CCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLHSVE---IKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~~~---~~~fd~VIVDEAsq~~ 210 (549)
+..++|++||+.....+.... ...+++||||||..+.
T Consensus 112 ~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 112 LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLD 151 (702)
T ss_dssp STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGG
T ss_pred ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecC
Confidence 468999999997665432211 3478999999998754
No 86
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=21.04 E-value=3.5e+02 Score=26.97 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=48.3
Q ss_pred CeEEEEcCCCcccccccccCCH-HHHHHHHHHHHHHHHhhcCCC-CCccEEEEccchHHHHHHHHHHhhhhcCCCCCeEE
Q 008899 313 PYSFINIIGGSEEFIYHSCRNM-VEVSVVIKILQKLYKAWVGSK-QKVSIGVVSPYTAQAVAIRKKIGSEYENKDGFTVK 390 (549)
Q Consensus 313 ~~~fidv~~g~e~~~~~S~~N~-~Ea~~V~~lv~~L~~~~~~~~-~~~sIgIITPY~aQ~~~I~~~L~~~~~~~~~~~v~ 390 (549)
.+...|+. .|.-|+ .|+.-.+. +-.+...+...+ ...-|-|++||...+....+.|+..+. .+.
T Consensus 162 D~ivcDig--------eSs~~~~ve~~Rtl~-vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fg-----g~l 227 (321)
T 3lkz_A 162 DTLLCDIG--------ESSSSAEVEEHRTIR-VLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYG-----GGL 227 (321)
T ss_dssp SEEEECCC--------CCCSCHHHHHHHHHH-HHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHC-----CEE
T ss_pred CEEEEECc--------cCCCChhhhhhHHHH-HHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhC-----CEe
Confidence 45667773 222243 35544333 223333333322 345688999999999777777877655 344
Q ss_pred EecccCCCCccccEEEEEccccC
Q 008899 391 VKSIDGFQGGEEDIIIISTVRCN 413 (549)
Q Consensus 391 V~TVd~fQG~E~DiVIlS~vrs~ 413 (549)
|.-.. +--...++-.+|.+++|
T Consensus 228 vr~P~-SRnst~EmY~vsGa~gN 249 (321)
T 3lkz_A 228 VRNPL-SRNSTHEMYWVSRASGN 249 (321)
T ss_dssp ECCTT-SCTTCCCEEEETTCCSC
T ss_pred EeCCC-CCCCcceEEEEecCCCC
Confidence 44444 44445555566665554
No 87
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.81 E-value=24 Score=39.10 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=26.9
Q ss_pred hcCCcEEEEccccchhhcccC---CCCCCEEEEEcCCCCC
Q 008899 174 FKRASLFFSTASSSYKLHSVE---IKPLNFLVIDEAAQLK 210 (549)
Q Consensus 174 l~~a~vI~~T~~sa~~l~~~~---~~~fd~VIVDEAsq~~ 210 (549)
+.+++|++||+.....+.... ...+++||||||..+.
T Consensus 119 ~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 119 LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 468999999997665422211 3468999999998865
Done!