Query 008900
Match_columns 549
No_of_seqs 394 out of 2189
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 6.6E-87 1.4E-91 736.4 35.9 472 33-544 33-512 (834)
2 KOG2195 Transferrin receptor a 100.0 4E-30 8.8E-35 286.4 16.7 274 124-406 334-633 (702)
3 PRK10199 alkaline phosphatase 100.0 5.4E-28 1.2E-32 250.5 27.8 259 53-330 30-344 (346)
4 PF04389 Peptidase_M28: Peptid 100.0 4.4E-30 9.5E-35 244.4 10.1 168 145-314 1-179 (179)
5 KOG3946 Glutaminyl cyclase [Po 99.8 3.3E-18 7.1E-23 168.7 16.5 248 51-325 48-333 (338)
6 COG2234 Iap Predicted aminopep 99.7 1.1E-17 2.5E-22 180.7 15.2 188 126-324 182-390 (435)
7 TIGR03176 AllC allantoate amid 99.6 3.1E-14 6.7E-19 153.0 14.2 126 54-211 3-140 (406)
8 PRK09133 hypothetical protein; 99.5 3.2E-13 6.9E-18 147.8 18.6 152 49-227 32-204 (472)
9 PRK12891 allantoate amidohydro 99.5 1.6E-13 3.5E-18 147.7 15.6 129 49-209 5-145 (414)
10 PRK12890 allantoate amidohydro 99.5 2.5E-13 5.5E-18 146.1 15.7 128 52-211 7-145 (414)
11 PRK08596 acetylornithine deace 99.5 7.9E-13 1.7E-17 142.6 17.8 146 54-228 13-179 (421)
12 TIGR01879 hydantase amidase, h 99.5 4.5E-13 9.9E-18 143.6 15.0 126 55-212 2-139 (401)
13 PRK06133 glutamate carboxypept 99.5 1.7E-12 3.8E-17 139.6 18.8 144 54-228 37-198 (410)
14 PRK13590 putative bifunctional 99.5 4.6E-13 1E-17 150.4 14.5 127 52-210 179-321 (591)
15 PRK07473 carboxypeptidase; Pro 99.5 1.9E-12 4.1E-17 137.9 18.3 151 51-229 8-175 (376)
16 PRK13799 unknown domain/N-carb 99.5 4.9E-13 1.1E-17 150.1 13.6 127 52-210 179-321 (591)
17 PRK09290 allantoate amidohydro 99.5 9.8E-13 2.1E-17 141.5 15.5 130 51-212 4-145 (413)
18 PRK08262 hypothetical protein; 99.4 2.9E-12 6.4E-17 140.7 17.5 154 27-211 15-201 (486)
19 PRK12892 allantoate amidohydro 99.4 2.7E-12 5.9E-17 137.8 15.7 129 51-212 7-146 (412)
20 PRK07338 hypothetical protein; 99.4 4.7E-12 1E-16 135.5 17.0 158 53-228 16-191 (402)
21 PRK12893 allantoate amidohydro 99.4 2.8E-12 6E-17 137.8 15.1 129 52-212 8-148 (412)
22 PRK07906 hypothetical protein; 99.4 3.2E-12 6.9E-17 138.0 15.1 129 57-212 2-154 (426)
23 PRK08588 succinyl-diaminopimel 99.4 6.2E-12 1.4E-16 133.4 16.6 141 53-227 1-162 (377)
24 PRK13013 succinyl-diaminopimel 99.4 8.6E-12 1.9E-16 134.5 17.9 155 54-228 14-189 (427)
25 TIGR01910 DapE-ArgE acetylorni 99.4 7.1E-12 1.5E-16 132.9 15.8 146 58-228 2-168 (375)
26 PRK06446 hypothetical protein; 99.4 1E-11 2.2E-16 134.6 16.1 143 54-228 2-165 (436)
27 PF09940 DUF2172: Domain of un 99.4 3.4E-11 7.3E-16 124.8 18.5 242 50-330 56-308 (386)
28 PRK07907 hypothetical protein; 99.4 1.7E-11 3.6E-16 133.4 17.3 144 53-228 17-185 (449)
29 PRK09104 hypothetical protein; 99.4 2.3E-11 5E-16 132.9 18.4 148 53-228 16-192 (464)
30 TIGR01880 Ac-peptdase-euk N-ac 99.3 2.4E-11 5.1E-16 130.1 16.9 148 50-226 5-174 (400)
31 PRK08201 hypothetical protein; 99.3 2.6E-11 5.7E-16 132.1 16.6 146 54-228 14-184 (456)
32 PRK13983 diaminopimelate amino 99.3 6E-11 1.3E-15 126.5 18.3 150 54-225 5-180 (400)
33 PRK04443 acetyl-lysine deacety 99.3 3.1E-11 6.6E-16 127.0 15.3 134 52-228 4-149 (348)
34 PF05450 Nicastrin: Nicastrin; 99.3 5.9E-11 1.3E-15 118.2 15.7 165 145-310 1-200 (234)
35 PRK06915 acetylornithine deace 99.3 7.3E-11 1.6E-15 127.2 17.2 157 54-227 17-194 (422)
36 TIGR01893 aa-his-dipept aminoa 99.3 4.3E-11 9.3E-16 131.4 15.6 137 53-228 3-166 (477)
37 PRK07079 hypothetical protein; 99.3 6.1E-11 1.3E-15 129.8 16.5 149 52-227 15-191 (469)
38 TIGR01883 PepT-like peptidase 99.3 6.2E-11 1.3E-15 124.9 15.8 128 55-211 1-146 (361)
39 KOG2275 Aminoacylase ACY1 and 99.3 7.3E-11 1.6E-15 123.3 15.9 146 51-228 26-193 (420)
40 PRK05469 peptidase T; Provisio 99.3 8E-11 1.7E-15 126.5 16.0 139 55-227 3-199 (408)
41 PRK06837 acetylornithine deace 99.3 1.1E-10 2.5E-15 126.2 17.1 155 54-227 20-198 (427)
42 PRK07522 acetylornithine deace 99.2 1.1E-10 2.3E-15 124.1 15.5 141 54-227 4-166 (385)
43 PRK07318 dipeptidase PepV; Rev 99.2 1.1E-10 2.4E-15 127.7 15.9 126 54-213 14-167 (466)
44 PRK06156 hypothetical protein; 99.2 2.6E-10 5.6E-15 126.6 18.9 137 54-227 46-214 (520)
45 PRK13381 peptidase T; Provisio 99.2 1.4E-10 2.9E-15 124.6 15.9 138 56-227 3-197 (404)
46 PRK07205 hypothetical protein; 99.2 1.5E-10 3.2E-15 125.9 15.8 129 52-213 9-165 (444)
47 TIGR01892 AcOrn-deacetyl acety 99.2 1.5E-10 3.3E-15 121.8 15.2 137 59-228 2-158 (364)
48 PRK15026 aminoacyl-histidine d 99.2 2.9E-10 6.4E-15 124.9 17.8 138 51-227 7-171 (485)
49 PRK00466 acetyl-lysine deacety 99.2 1.8E-10 4E-15 121.0 15.6 129 53-228 9-149 (346)
50 PRK08651 succinyl-diaminopimel 99.2 2.4E-10 5.2E-15 121.9 16.4 149 53-228 5-173 (394)
51 PRK05111 acetylornithine deace 99.2 2.6E-10 5.6E-15 121.2 16.6 141 54-226 5-169 (383)
52 PRK08652 acetylornithine deace 99.2 1.9E-10 4.1E-15 120.3 15.1 131 54-227 2-144 (347)
53 PRK13009 succinyl-diaminopimel 99.2 2.4E-10 5.1E-15 121.0 16.0 139 55-227 3-164 (375)
54 TIGR01882 peptidase-T peptidas 99.2 2.4E-10 5.3E-15 123.0 15.8 140 54-226 3-200 (410)
55 PRK13007 succinyl-diaminopimel 99.2 3.8E-10 8.3E-15 118.4 16.1 134 53-227 6-156 (352)
56 KOG2526 Predicted aminopeptida 99.2 6E-09 1.3E-13 108.7 23.8 195 126-324 191-414 (555)
57 COG4882 Predicted aminopeptida 99.2 4.7E-10 1E-14 114.7 14.9 156 127-308 177-344 (486)
58 PRK08554 peptidase; Reviewed 99.2 5.6E-10 1.2E-14 121.4 16.3 140 56-228 3-166 (438)
59 COG0624 ArgE Acetylornithine d 99.2 5.2E-10 1.1E-14 120.2 15.6 144 55-226 14-180 (409)
60 TIGR01886 dipeptidase dipeptid 99.1 4.5E-10 9.8E-15 123.0 14.9 126 54-213 13-166 (466)
61 TIGR01246 dapE_proteo succinyl 99.1 9.6E-10 2.1E-14 116.4 15.9 136 58-227 3-161 (370)
62 PRK13004 peptidase; Reviewed 99.1 1.5E-09 3.3E-14 116.3 16.5 135 54-227 15-172 (399)
63 PF01546 Peptidase_M20: Peptid 99.1 4.1E-10 8.9E-15 107.1 10.2 166 148-325 1-188 (189)
64 TIGR01902 dapE-lys-deAc N-acet 99.1 1.4E-09 3E-14 113.8 13.6 125 59-228 2-138 (336)
65 TIGR01900 dapE-gram_pos succin 99.1 2.1E-09 4.5E-14 114.5 14.8 135 60-228 2-171 (373)
66 TIGR01887 dipeptidaselike dipe 99.0 3.7E-09 7.9E-14 115.3 14.8 124 55-212 3-154 (447)
67 COG1363 FrvX Cellulase M and r 99.0 2.9E-08 6.4E-13 104.0 20.1 150 162-329 178-348 (355)
68 TIGR03106 trio_M42_hydro hydro 99.0 3.2E-08 6.9E-13 104.2 20.1 145 162-324 181-339 (343)
69 PRK08737 acetylornithine deace 98.9 9.6E-09 2.1E-13 109.1 14.1 132 53-228 5-157 (364)
70 TIGR03526 selenium_YgeY putati 98.9 1.8E-08 4E-13 107.8 16.0 134 54-226 13-169 (395)
71 TIGR01891 amidohydrolases amid 98.9 1.8E-08 3.9E-13 106.6 15.5 133 58-228 3-152 (363)
72 TIGR03320 ygeY M20/DapE family 98.9 2E-08 4.4E-13 107.4 15.7 134 54-226 13-169 (395)
73 TIGR03107 glu_aminopep glutamy 98.9 1.8E-07 3.9E-12 98.8 19.7 147 162-328 176-342 (350)
74 PRK09961 exoaminopeptidase; Pr 98.9 1.4E-07 3E-12 99.5 19.0 150 161-327 163-333 (344)
75 PLN02693 IAA-amino acid hydrol 98.8 1.3E-07 2.9E-12 102.8 15.5 121 60-212 49-183 (437)
76 PLN02280 IAA-amino acid hydrol 98.7 3.2E-07 6.9E-12 100.9 17.1 135 57-224 96-244 (478)
77 COG4310 Uncharacterized protei 98.7 2E-07 4.4E-12 94.1 13.6 195 98-329 152-355 (435)
78 PRK09864 putative peptidase; P 98.7 1.2E-06 2.6E-11 92.5 19.9 147 162-327 173-341 (356)
79 COG4187 RocB Arginine degradat 98.7 1.3E-07 2.8E-12 99.5 11.2 158 50-229 4-209 (553)
80 KOG2276 Metalloexopeptidases [ 98.5 1.1E-06 2.5E-11 91.7 11.3 140 53-212 15-180 (473)
81 KOG2657 Transmembrane glycopro 98.0 5.3E-05 1.2E-09 81.4 11.2 187 126-313 155-374 (596)
82 PF05343 Peptidase_M42: M42 gl 97.9 6.1E-05 1.3E-09 77.8 9.6 131 162-306 132-282 (292)
83 COG1473 AbgB Metal-dependent a 96.8 0.033 7.1E-07 60.0 15.3 138 57-226 11-164 (392)
84 COG2195 PepD Di- and tripeptid 96.5 0.007 1.5E-07 65.3 7.7 61 162-225 142-203 (414)
85 PF04114 Gaa1: Gaa1-like, GPI 94.1 0.34 7.3E-06 54.0 10.9 98 128-234 3-114 (504)
86 PRK02256 putative aminopeptida 84.8 1.3 2.9E-05 48.8 5.2 45 160-208 256-300 (462)
87 KOG3566 Glycosylphosphatidylin 80.4 12 0.00027 41.9 10.4 75 128-212 120-194 (617)
88 COG1362 LAP4 Aspartyl aminopep 71.6 27 0.00058 38.0 9.8 71 74-156 20-90 (437)
89 PRK02813 putative aminopeptida 71.2 3.5 7.6E-05 45.1 3.3 141 160-311 230-415 (428)
90 PTZ00371 aspartyl aminopeptida 61.2 11 0.00023 41.8 4.7 148 160-313 247-444 (465)
91 PRK13755 putative mercury tran 51.1 70 0.0015 29.0 7.1 50 408-460 38-90 (139)
92 PF04253 TFR_dimer: Transferri 50.0 1.8 3.9E-05 38.8 -3.1 51 355-406 2-57 (125)
93 PRK02813 putative aminopeptida 48.9 81 0.0017 34.6 8.8 64 77-157 21-89 (428)
94 PTZ00371 aspartyl aminopeptida 34.8 97 0.0021 34.4 6.8 64 76-156 21-90 (465)
95 KOG3088 Secretory carrier memb 31.5 5.9E+02 0.013 26.5 11.0 23 448-472 170-192 (313)
96 PRK10263 DNA translocase FtsK; 31.3 5.1E+02 0.011 32.7 12.3 29 399-428 62-90 (1355)
97 PF05313 Pox_P21: Poxvirus P21 26.2 2.3E+02 0.005 27.4 6.7 38 497-534 123-161 (189)
98 TIGR01880 Ac-peptdase-euk N-ac 23.7 1.4E+02 0.0031 31.7 5.7 57 268-329 342-399 (400)
99 PRK07033 hypothetical protein; 22.6 6.2E+02 0.013 27.8 10.3 54 145-199 345-400 (427)
100 PRK13381 peptidase T; Provisio 20.0 1.5E+02 0.0033 31.6 5.0 54 268-328 350-403 (404)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=6.6e-87 Score=736.37 Aligned_cols=472 Identities=29% Similarity=0.549 Sum_probs=411.7
Q ss_pred HHhhccCCCC--CC-CCCcCcCcHHHHHHHHHHHHHhcCCCCCCChhHH-HHHHHHHHHHHcccccCCCc-eeEEEEeee
Q 008900 33 IVHLKFVKPL--DS-DAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLR-EAAVYIKTQLEGIKERAGPK-FRIEIEENV 107 (549)
Q Consensus 33 ~~~~~~~~p~--~~-~~~~~~fs~era~~~l~~La~~ig~R~~gS~~~e-~a~~yl~~~l~~ig~~~~~~-~~vev~~~~ 107 (549)
+.+.++|.|+ +. +..+++|+++||++++.+++ ++|||++||+++| ++++|+.+|++++++..+.+ +++|+|.|.
T Consensus 33 ~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls-~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~ 111 (834)
T KOG2194|consen 33 YLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLS-AAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQS 111 (834)
T ss_pred HHHhhccccCCCcchhcCchhhHHHHHHHHHHHHH-hcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceee
Confidence 3344444444 33 33478999999999999999 7999999999999 99999999999999877553 789999999
Q ss_pred ecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCC
Q 008900 108 VNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPP 187 (549)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~ 187 (549)
.+|+|.. +.+++.|++++||++++++++. ..+.++|++||+||+|++|||+||++|||+|||++|++.+.....+
T Consensus 112 ~sg~~~~----~~~~~~Y~~i~NIvVki~~k~~-~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~ 186 (834)
T KOG2194|consen 112 ASGSFIL----EGMTLVYQNISNIVVKISPKNG-NDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLT 186 (834)
T ss_pred ccceeee----hhhhheeeeeeeEEEecCCCCC-CccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCCccc
Confidence 9998843 6788999999999999999864 3345999999999999999999999999999999999999877779
Q ss_pred CCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCCCCCCceEEecCCCCchhhHhhhhcccccccccccccc--
Q 008900 188 RPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVF-- 265 (549)
Q Consensus 188 ~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G~gg~~~lfq~~p~~~~~~~y~~~~~~p~~~~~~~~~f-- 265 (549)
|+|+|+||++||.+++|||+|++||||+++++++||||++|+||++++||+||++|+.+.|.++++||+++++++|+|
T Consensus 187 ~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~ 266 (834)
T KOG2194|consen 187 HSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQS 266 (834)
T ss_pred ccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCCCchHHHhhcCCCCcEEEEEEecCCCcCCCccCCcCCCCHHHHHHHHHHHHHHHHHHhcCcCcccchhhhhhhhh
Q 008900 266 PVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEAT 345 (549)
Q Consensus 266 ~~ips~sD~~~F~~~~~giPgld~a~~~~~y~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~~~~l~~~~~~~~~~~~ 345 (549)
|.+||+|||++|+ +|+|+||+|+|+..|+|.|||++|.++++.|+++||+|+|++++++.++++ ++.+.+++
T Consensus 267 g~IpSdTDfrif~-eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~~~~~~------ 338 (834)
T KOG2194|consen 267 GIIPSDTDFRIFR-EYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELDNSTER------ 338 (834)
T ss_pred CcCccccchHHHH-HhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhcccccc------
Confidence 8999999999997 599999999999999999999999999999999999999999999999998 66654433
Q ss_pred cCCCCCCceeEccchhhhhhHccHHHHHHHhhhhHHHhhccceEEEEecccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008900 346 GIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFP 425 (549)
Q Consensus 346 ~~~~~~~~~V~fd~lg~~~~~y~~~~a~~l~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (549)
.++ .||||++|++++.|+++++++||..+... ++++.-+.... + +.+|...+.++++++++++++|
T Consensus 339 ----~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~~~------i~l~~~~~g~~--~-~~~f~~~~~~~i~s~~~~~~l~ 404 (834)
T KOG2194|consen 339 ----SKG-TVYFDVVGKYFLAYSESTGVILNITICIS------IWLMSLRSGSS--Q-LGKFILACLLQILSIVVAIGLP 404 (834)
T ss_pred ----CCC-ceehhhhhhhhheeehhhhhhhhhhhhhh------hhhhhhcccch--h-hhhHHHHHHHHHHHHHHHHhhH
Confidence 245 99999999999999999999999332221 11221111111 2 6788888999999999999999
Q ss_pred HHHHHHHHHhcCCeeeeechhhHHHHHHHHHHHHHHHHHHHhHhcCCcchhhhhhhccccchhHH-HHHHHHHHHHHHHH
Q 008900 426 IAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDE-ARFWGAFGFYAMLT 504 (549)
Q Consensus 426 ~~~a~~~~~~~~~~m~w~s~~~l~~~ly~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 504 (549)
+++|++++.+ +.+|+||++||+++++|.||+++|+.+++.+|.++.| +.+.+..++ +.++|. ++++|+
T Consensus 405 ~~~a~~l~~v-~l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~--------~~~~~~~~~~ql~~h~--~l~~l~ 473 (834)
T KOG2194|consen 405 VLVALFLDWV-GLPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSK--------RHSLEYLQHDQLLLHS--LLSILL 473 (834)
T ss_pred HHHHHHhhcc-cccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhcc--------ccccchhhHHHHHHHH--HHHHHH
Confidence 9999988876 6799999999999999999999999999999876654 444555554 666665 899999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccccc
Q 008900 505 MAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSL 544 (549)
Q Consensus 505 ~~~~~~g~~s~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (549)
+++|++||||+|+++++++||+++.+ +|.+++++-+..+
T Consensus 474 ~~~t~y~I~S~y~~~~~~~~~v~~~~-~~~~~~l~~~~~~ 512 (834)
T KOG2194|consen 474 IIMTYYGIRSAYLPLLLLLFYVISYL-LNTLTILHLCGTL 512 (834)
T ss_pred HHheecccchhHHHHHHHHHHHHHHH-HhhceeeccCCce
Confidence 99999999999999999999999988 8888888865543
No 2
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.97 E-value=4e-30 Score=286.41 Aligned_cols=274 Identities=25% Similarity=0.258 Sum_probs=200.7
Q ss_pred cccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHH---HhcCCCCCCCEEEEEeCcccC
Q 008900 124 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLT---IDSGWIPPRPIIFLFNGAEEL 200 (549)
Q Consensus 124 ~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L---~~~~~~p~~~I~flf~~~EE~ 200 (549)
....++||+++|+|+ ++||++|++++|+|||. +||.|+++|++.++|++|.+ .+.||+|+|+|+|++|+|||+
T Consensus 334 ~~~ki~NIig~I~Gs--~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf 409 (702)
T KOG2195|consen 334 EETKIQNIIGKIEGS--EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF 409 (702)
T ss_pred eeeeeeeEEEEEecC--cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc
Confidence 446789999999997 46899999999999999 89999999999999999997 457899999999999999999
Q ss_pred CCcchHHHHhhcC--ccCcccEEEEeccCCCCCCceEEecCCCCchhhHh---hhhccccccccccccccCCCCCCCchH
Q 008900 201 FMLGAHGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVY---AQSAIYPMAHSAAQDVFPVIPGDTDYR 275 (549)
Q Consensus 201 gl~GS~~f~~~~~--~~~~v~a~INLD~~G~gg~~~lfq~~p~~~~~~~y---~~~~~~p~~~~~~~~~f~~ips~sD~~ 275 (549)
|+.||.+|++++. +..++.++||+|+++.|+..+..+++|. +.+.. .+..+.|........+-.. +++|||.
T Consensus 410 GliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~~~Pl--L~~li~~~~k~~~~p~~~~~~~~v~~~-g~~Sd~~ 486 (702)
T KOG2195|consen 410 GLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVKTTPL--LTDLIEEAAKSVLSPDKGDQSNRVLSL-GGGSDYA 486 (702)
T ss_pred cccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEecCcc--HHHHHHHHHhccCCCCccccceeEecc-CCCCcch
Confidence 9999999999883 5688999999999999888888888875 33222 2334455433221112223 7899999
Q ss_pred HHhhcCCCCcEEEEEEecCCCcCCCccCCcCCC----CHHH--HHHHHHHHHHHHHHHhcCcCcc-cchhhhh-h-----
Q 008900 276 IFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRL----LPGS--VQARGDNLFNVLKAFSNSSKLQ-NAHDRAS-F----- 342 (549)
Q Consensus 276 ~F~~~~~giPgld~a~~~~~y~YHT~~Dt~d~i----d~~~--lq~~g~~~l~l~~~la~~~~l~-~~~~~~~-~----- 342 (549)
+|.+ |.|||+++++|...-++|||.+||++.+ |+.. +..++.++...+-.+++++.+| |..+|.. +
T Consensus 487 ~F~~-~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd~~~Y~~~l~~~~~ 565 (702)
T KOG2195|consen 487 SFLQ-FAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFDISDYADVLLKTLP 565 (702)
T ss_pred hhcc-ccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCcHHHHHHHHHHHHH
Confidence 9985 8999999999988666999999996554 6553 3334444555555556655566 5544321 1
Q ss_pred --hhh---cCCCCCCceeEccchhhhhhHccHHHHHHHhhhhHHHhhccceEEEEecccchhHHHHHHH
Q 008900 343 --EAT---GIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSD 406 (549)
Q Consensus 343 --~~~---~~~~~~~~~V~fd~lg~~~~~y~~~~a~~l~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 406 (549)
+.. ...........|+....++..++. ....+...........+..++..|+++|..||+|++
T Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~er~f~~ 633 (702)
T KOG2195|consen 566 KLEELSPDKVNFLLTIQGLFSWRLDALKAAEW-ESSELSSRFSHGDKIEPSKLRPNNDRLMLIERTFLD 633 (702)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccccccccccHHHHHhHHhhcC
Confidence 111 111222334556666666776666 344455555555666676777889999999998765
No 3
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.96 E-value=5.4e-28 Score=250.47 Aligned_cols=259 Identities=17% Similarity=0.178 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccc--ccccccccce
Q 008900 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHS--ISLGYRNHTN 130 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~--~~~~~~~~~N 130 (549)
.+-+.++++.++..+++|..||++++++++||.++|+++| ++++.+.... .|.. ...+ .........|
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG------~~v~~q~f~~--~~~~--~~~~g~~~~~~~~g~n 99 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMG------YQSDIRTFNS--RYIY--TARDNRKNWHNVTGST 99 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCC------CceEeeeccc--ccee--ecccccccccCCccce
Confidence 4457788999998999999999999999999999999999 5554432110 0000 0000 0001124579
Q ss_pred EEEEEeCCCCCCCCCeEEEeeecCCCCC--------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Q 008900 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNG 196 (549)
Q Consensus 131 Vi~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~ 196 (549)
||++++|+. ++.|+++||+|||++ .|||.||++|||+|||++|.|++. +++++|+|++++
T Consensus 100 VIa~~~G~~----~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~~ 173 (346)
T PRK10199 100 VIAAHEGKA----PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVATS 173 (346)
T ss_pred EEEEECCCC----CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEEC
Confidence 999998853 467999999999852 479999999999999999999865 578899999999
Q ss_pred cccCCCcchHHHHhhcCc--cCcccEEEEeccCCCCCCceEEecCCCCch-h----hHhhhhccccccccccc-----cc
Q 008900 197 AEELFMLGAHGFMKAHKW--RDSVGAVINVEASGTGGLDLVCQSGPSSWP-S----SVYAQSAIYPMAHSAAQ-----DV 264 (549)
Q Consensus 197 ~EE~gl~GS~~f~~~~~~--~~~v~a~INLD~~G~gg~~~lfq~~p~~~~-~----~~y~~~~~~p~~~~~~~-----~~ 264 (549)
+||.|+.||+.|+++.+. .+++.++||+|+.+.+ ....+.+|..... . ...........+..+.. +.
T Consensus 174 ~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~~~~~~~~~~~ 252 (346)
T PRK10199 174 GEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIARRHGIAATTNPGLNKN 252 (346)
T ss_pred CcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHHHHcCCccccCCCcccc
Confidence 999999999999987542 4689999999999875 4445555433110 1 00001111111111111 11
Q ss_pred c-CCCCCCCchHHHhhcCCCCcEEEEEEec-------------------CCCcCC-CccCCcCCCCHH-------HHHHH
Q 008900 265 F-PVIPGDTDYRIFSQDYGDIPGLDIIFLI-------------------GGYYYH-TSHDTVDRLLPG-------SVQAR 316 (549)
Q Consensus 265 f-~~ips~sD~~~F~~~~~giPgld~a~~~-------------------~~y~YH-T~~Dt~d~id~~-------~lq~~ 316 (549)
+ ......|||.+|.+ .|||.+.+.... +|..|| |.+|+.+++|+. .++..
T Consensus 253 ~p~g~~~rSDH~~F~~--~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~~~~ 330 (346)
T PRK10199 253 YPKGTGCCNDAEVFDK--AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDV 330 (346)
T ss_pred ccCCCcCCcccHHHHh--cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHHHhH
Confidence 1 11234799999987 899999874221 134789 899999999754 55666
Q ss_pred HHHHHHHHHHHhcC
Q 008900 317 GDNLFNVLKAFSNS 330 (549)
Q Consensus 317 g~~~l~l~~~la~~ 330 (549)
.+.++.++++|+++
T Consensus 331 ~~~~~~~~~~~~~~ 344 (346)
T PRK10199 331 VRIMLPLVKELAKA 344 (346)
T ss_pred HHHHHHHHHHHhcc
Confidence 78888999988875
No 4
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.96 E-value=4.4e-30 Score=244.39 Aligned_cols=168 Identities=34% Similarity=0.454 Sum_probs=129.7
Q ss_pred CeEEEeeecCCCC------CCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhh-cCccCc
Q 008900 145 PSVLMNGHFDGPL------SSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKA-HKWRDS 217 (549)
Q Consensus 145 ~~Vll~aH~Dsv~------~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~-~~~~~~ 217 (549)
++|+++|||||++ .++||.||++||++|||++|.|++.+.+|+++|+|+||++||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 3799999999988 889999999999999999999999777889999999999999999999999973 356789
Q ss_pred ccEEEEeccCCCCCCceEEecCCC-CchhhHhhhhcccccccccccccc--CCCCCCCchHHHhhcCCCCcEEEEEEec-
Q 008900 218 VGAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQSAIYPMAHSAAQDVF--PVIPGDTDYRIFSQDYGDIPGLDIIFLI- 293 (549)
Q Consensus 218 v~a~INLD~~G~gg~~~lfq~~p~-~~~~~~y~~~~~~p~~~~~~~~~f--~~ips~sD~~~F~~~~~giPgld~a~~~- 293 (549)
+.++||+|++|.++..+..+..+. ++....+.+....+.......+.. ...+..|||.+|.. .|||++.+....
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~--~gip~~~~~~~~~ 158 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK--AGIPAVTLSSTDG 158 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT--TT-EEEEEEESSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc--CCEeEEEEEecCC
Confidence 999999999999988888887663 222222223333343333333222 33456799999985 899999998877
Q ss_pred CCCcCCCccCCcCCCCHHHHH
Q 008900 294 GGYYYHTSHDTVDRLLPGSVQ 314 (549)
Q Consensus 294 ~~y~YHT~~Dt~d~id~~~lq 314 (549)
..+.|||..||++++|+++||
T Consensus 159 ~~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 159 YNPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp SGTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCCcccChhhcCCccCC
Confidence 566999999999999999987
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.3e-18 Score=168.66 Aligned_cols=248 Identities=18% Similarity=0.212 Sum_probs=174.5
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccce
Q 008900 51 FSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (549)
Q Consensus 51 fs~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~N 130 (549)
-+..|.++.+.-+- -+|++||+++.++++||.+.++.++ +.+|.+....++ ...+.+..|
T Consensus 48 s~~~~~~~~L~p~l---v~Rvpgs~g~~~vr~~i~~~l~~l~------w~ve~~~f~~~t-----------p~g~~~f~n 107 (338)
T KOG3946|consen 48 SDWNRLWENLLPIL---VPRVPGSPGSRQVRRFIIQHLRNLG------WAVETDAFTDNT-----------PLGTRNFNN 107 (338)
T ss_pred CCHHHHHHhhhhhh---ccccCCCCccHHHHHHHHHHHHhcC------ceeeeccccccC-----------cceeeeeee
Confidence 35567777766554 3999999999999999999999997 888887654433 124466789
Q ss_pred EEEEEeCCCCCCCCCeEEEeeecCCCCCC----CCCCCCchHHHHHHHHHHHHHhc----CCCCCCCEEEEEeCccc---
Q 008900 131 IVMRISSTDSQDTDPSVLMNGHFDGPLSS----PGAGDCGSCVASMLELARLTIDS----GWIPPRPIIFLFNGAEE--- 199 (549)
Q Consensus 131 Vi~~i~G~~~~~~~~~Vll~aH~Dsv~~s----pGA~Dd~sgva~~LE~ar~L~~~----~~~p~~~I~flf~~~EE--- 199 (549)
+++++... ..++.++.|||||.... -||.|.+..||+|++++|.+.+. ...++-++.++|++|||
T Consensus 108 ii~tl~~~----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~ 183 (338)
T KOG3946|consen 108 LIATLDPN----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFE 183 (338)
T ss_pred EEEecCCC----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHh
Confidence 99999875 35889999999997532 48999999999999999999652 22456789999999999
Q ss_pred -----CCCcchHHHHhhc------C-----ccCcccEEEEeccCCCCCCceE--EecCCCCchhhHh---hhhccccccc
Q 008900 200 -----LFMLGAHGFMKAH------K-----WRDSVGAVINVEASGTGGLDLV--CQSGPSSWPSSVY---AQSAIYPMAH 258 (549)
Q Consensus 200 -----~gl~GS~~f~~~~------~-----~~~~v~a~INLD~~G~gg~~~l--fq~~p~~~~~~~y---~~~~~~p~~~ 258 (549)
..+.||+..+++. + .-+++...+-+|-.|+.++++- |..+ +.|..+.- .+......-.
T Consensus 184 eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~t-~~wF~Rl~~iE~~l~~~g~l~ 262 (338)
T KOG3946|consen 184 EWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPNT-DRWFHRLQSIEGELALLGLLA 262 (338)
T ss_pred hcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcch-HHHHHHHHHHHHHHHHHHHHH
Confidence 4678999988862 1 1245666777777777776541 1111 12432211 1100000000
Q ss_pred cccccc--c-CCCC---CCCchHHHhhcCCCCcEEEEEEecCCCcCCCccCCcCCCCHHHHHHHHHHHHHHHH
Q 008900 259 SAAQDV--F-PVIP---GDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLK 325 (549)
Q Consensus 259 ~~~~~~--f-~~ip---s~sD~~~F~~~~~giPgld~a~~~~~y~YHT~~Dt~d~id~~~lq~~g~~~l~l~~ 325 (549)
+-..+. | .... -+.||-||.+ .|+|-+.+.-..-..+|||+.|+..++|..+..+++..+.-++-
T Consensus 263 s~r~~~~~Fq~~~~~~~veDDHiPFlr--rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~ 333 (338)
T KOG3946|consen 263 SHRLPPRYFQPGGLSSVVEDDHIPFLR--RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFVA 333 (338)
T ss_pred hccCCchhccccCccccccCCcchhhh--cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHHH
Confidence 001111 2 1111 2789999997 79999998766666699999999999999999998888776654
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=180.68 Aligned_cols=188 Identities=26% Similarity=0.319 Sum_probs=134.0
Q ss_pred cccceEEEEEeCCC--------CCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCc
Q 008900 126 RNHTNIVMRISSTD--------SQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGA 197 (549)
Q Consensus 126 ~~~~NVi~~i~G~~--------~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~ 197 (549)
.+..|++++++|.. ....++.+++++|+|+++.+|||.||++|+|++||++|.|++. +|+++|+|+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~a 259 (435)
T COG2234 182 LTSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGA 259 (435)
T ss_pred eEEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecc
Confidence 34567777776651 1235788999999999999999999999999999999999976 4999999999999
Q ss_pred ccCCCcchHHHHhhcC--ccCcccEEEEeccCCCCCCceEEec--CCCCchhhHh---hhhcccccccccccccc-CCCC
Q 008900 198 EELFMLGAHGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQS--GPSSWPSSVY---AQSAIYPMAHSAAQDVF-PVIP 269 (549)
Q Consensus 198 EE~gl~GS~~f~~~~~--~~~~v~a~INLD~~G~gg~~~lfq~--~p~~~~~~~y---~~~~~~p~~~~~~~~~f-~~ip 269 (549)
||.|+.||+.|+.++. ..+++..+||+|+.|..++.-.++. .+.+...... .+....+... .+ ....
T Consensus 260 EE~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 334 (435)
T COG2234 260 EESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STVQDFD 334 (435)
T ss_pred hhhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----cccCCCC
Confidence 9999999999999765 3577888999999998763322222 1111111110 0111111110 11 2234
Q ss_pred CCCchHHHhhcCCCCcEEEEEEecCC-----CcCCCccCCcCCCCHHHHHHHHHHHHHHH
Q 008900 270 GDTDYRIFSQDYGDIPGLDIIFLIGG-----YYYHTSHDTVDRLLPGSVQARGDNLFNVL 324 (549)
Q Consensus 270 s~sD~~~F~~~~~giPgld~a~~~~~-----y~YHT~~Dt~d~id~~~lq~~g~~~l~l~ 324 (549)
..+||.+|.+ +|+|++.+...... .++||..|| ++ |...++..+..+....
T Consensus 335 ~~sd~~~f~~--~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~ 390 (435)
T COG2234 335 PRSDHYPFTE--AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATL 390 (435)
T ss_pred CCCcchhhhh--cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhh
Confidence 5799999986 89999987654433 389999999 88 7777777775544433
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.56 E-value=3.1e-14 Score=153.04 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcC-------CCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccccc
Q 008900 54 ARAIQHVRVLADEIG-------DRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYR 126 (549)
Q Consensus 54 era~~~l~~La~~ig-------~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~ 126 (549)
.|.++.+++|+ +|| .|...|++..++++|+.++++++| .++.+|.
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~G------l~v~~D~--------------------- 54 (406)
T TIGR03176 3 KHFRQAIEELS-SFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESG------LETRFDD--------------------- 54 (406)
T ss_pred HHHHHHHHHHh-ccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CEEEEcC---------------------
Confidence 47889999998 675 355668889999999999999999 6665553
Q ss_pred ccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC-----
Q 008900 127 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF----- 201 (549)
Q Consensus 127 ~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~g----- 201 (549)
..|++++++|+++ +.+.|++++|+||||. .|..|+..||++.||++|.|++.+.+|+++|.+++|.+||.+
T Consensus 55 -~gN~~~~~~g~~~--~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~ 130 (406)
T TIGR03176 55 -VGNLYGRLVGTEF--PEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYV 130 (406)
T ss_pred -CCcEEEEecCCCC--CCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcc
Confidence 3599999999753 4578999999999996 578899999999999999999998999999999999999976
Q ss_pred CcchHHHHhh
Q 008900 202 MLGAHGFMKA 211 (549)
Q Consensus 202 l~GS~~f~~~ 211 (549)
+.||+.+..+
T Consensus 131 ~~Gs~~~~g~ 140 (406)
T TIGR03176 131 FWGSKNIFGL 140 (406)
T ss_pred cccHHHHhCC
Confidence 9999999853
No 8
>PRK09133 hypothetical protein; Provisional
Probab=99.52 E-value=3.2e-13 Score=147.82 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=116.7
Q ss_pred CcCcHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccccccc
Q 008900 49 DRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (549)
Q Consensus 49 ~~fs~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~ 128 (549)
+++..+++.+.+++|. +|.+- .+..+++++.+||.++|+++|.+. ..++++.. ....
T Consensus 32 ~~~~~~~~~~~l~~Lv-~i~S~-s~~~~e~~~~~~l~~~l~~~G~~~---~~~~~~~~------------------~~~~ 88 (472)
T PRK09133 32 PTADQQAARDLYKELI-EINTT-ASTGSTTPAAEAMAARLKAAGFAD---ADIEVTGP------------------YPRK 88 (472)
T ss_pred cchhHHHHHHHHHHHh-ccCCC-CCCcchHHHHHHHHHHHHHcCCCc---eEEEeccC------------------CCCc
Confidence 4577888999999998 56652 222345589999999999998322 11222210 0123
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeeecCCCCC--------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCC
Q 008900 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 188 (549)
Q Consensus 129 ~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~ 188 (549)
.|++++++|+++ .+.|++++|+|+||. ++|+.||++|++++|++++.|.+.+.++++
T Consensus 89 ~nli~~~~g~~~---~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~ 165 (472)
T PRK09133 89 GNLVARLRGTDP---KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKR 165 (472)
T ss_pred eeEEEEecCCCC---CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCC
Confidence 699999987642 367999999999984 569999999999999999999988878899
Q ss_pred CEEEEEeCccc-CCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 189 PIIFLFNGAEE-LFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 189 ~I~flf~~~EE-~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
+|.|++..+|| .|..|++.++++++...+..++|+ |..
T Consensus 166 ~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~~ 204 (472)
T PRK09133 166 DIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EGG 204 (472)
T ss_pred CEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CCC
Confidence 99999999999 889999999987653234577888 753
No 9
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.52 E-value=1.6e-13 Score=147.69 Aligned_cols=129 Identities=24% Similarity=0.253 Sum_probs=107.7
Q ss_pred CcCcHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccc
Q 008900 49 DRFSEARAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSI 121 (549)
Q Consensus 49 ~~fs~era~~~l~~La~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~ 121 (549)
++++.+|.++.+++|+ .||. |...|+++.++++||.++|++.| ++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G------~~v~~~~---------------- 61 (414)
T PRK12891 5 PRVDGERLWASLERMA-QIGATPKGGVCRLALTDGDREARDLFVAWARDAG------CTVRVDA---------------- 61 (414)
T ss_pred cccCHHHHHHHHHHHH-hccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEECC----------------
Confidence 3446679999999999 5752 66778888899999999999999 6655541
Q ss_pred cccccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC
Q 008900 122 SLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF 201 (549)
Q Consensus 122 ~~~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~g 201 (549)
..|++++++|.++ ..+.|++++|+||||. .|..|+++|+++++++++.|++.+.+++++|.|+++.+||.+
T Consensus 62 ------~gNl~a~~~g~~~--~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~ 132 (414)
T PRK12891 62 ------MGNLFARRAGRDP--DAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGS 132 (414)
T ss_pred ------CCCEEEEecCCCC--CCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccC
Confidence 2499999988642 3478999999999995 366899999999999999999998899999999999999975
Q ss_pred -----CcchHHHH
Q 008900 202 -----MLGAHGFM 209 (549)
Q Consensus 202 -----l~GS~~f~ 209 (549)
+.||+.+.
T Consensus 133 ~f~~~~~Gs~~~~ 145 (414)
T PRK12891 133 RFAPSMVGSGVFF 145 (414)
T ss_pred cCCcccccHHHHh
Confidence 57998774
No 10
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.50 E-value=2.5e-13 Score=146.08 Aligned_cols=128 Identities=21% Similarity=0.277 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHHhcC------CCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccc
Q 008900 52 SEARAIQHVRVLADEIG------DRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGY 125 (549)
Q Consensus 52 s~era~~~l~~La~~ig------~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~ 125 (549)
+.+++++++.+|+ +|+ .|+..|+++.++++||.++|+++| ++++.+.
T Consensus 7 ~~~~~~~~~~~~~-~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~~-------------------- 59 (414)
T PRK12890 7 NGERLLARLEELA-AIGRDGPGWTRLALSDEERAARALLAAWMRAAG------LEVRRDA-------------------- 59 (414)
T ss_pred CHHHHHHHHHHHh-ccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEcC--------------------
Confidence 4689999999999 676 456778888899999999999998 5555431
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----
Q 008900 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL----- 200 (549)
Q Consensus 126 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~----- 200 (549)
..|++++++|+.+ +.+.|++++|+|+||. .|..|+++|++++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 60 --~~nlia~~~g~~~--~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~ 134 (414)
T PRK12890 60 --AGNLFGRLPGRDP--DLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGP 134 (414)
T ss_pred --CCcEEEEeCCCCC--CCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCC
Confidence 2499999987532 3468999999999995 46789999999999999999988888899999999999997
Q ss_pred CCcchHHHHhh
Q 008900 201 FMLGAHGFMKA 211 (549)
Q Consensus 201 gl~GS~~f~~~ 211 (549)
++.||+.+...
T Consensus 135 ~~~G~~~~~~~ 145 (414)
T PRK12890 135 SMIGSRALAGT 145 (414)
T ss_pred ccccHHHHHcc
Confidence 67899888764
No 11
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.48 E-value=7.9e-13 Score=142.64 Aligned_cols=146 Identities=22% Similarity=0.236 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~ 133 (549)
+++.+.+++|. +|.+-.....+++++++||.++|+++| ++++.++.. ....|+++
T Consensus 13 ~~~~~~l~~Lv-~i~S~s~~~~~e~~~a~~l~~~l~~~G------~~~~~~~~~------------------~~~~nvia 67 (421)
T PRK08596 13 DELLELLKTLV-RFETPAPPARNTNEAQEFIAEFLRKLG------FSVDKWDVY------------------PNDPNVVG 67 (421)
T ss_pred HHHHHHHHHHh-cCCCCCCCchhHHHHHHHHHHHHHHCC------CeEEEEEcc------------------CCCceEEE
Confidence 56778888888 555422111244578999999999998 555544321 11259999
Q ss_pred EEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEE
Q 008900 134 RISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (549)
Q Consensus 134 ~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~f 192 (549)
+++|+++ ...+.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|+|
T Consensus 68 ~~~g~~~-~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~ 146 (421)
T PRK08596 68 VKKGTES-DAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIF 146 (421)
T ss_pred EecCCCC-CCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 9987632 12357999999999874 4699999999999999999999888888899999
Q ss_pred EEeCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 193 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 193 lf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
+|.++||.|..|++.++++.. ....+|+.|..+
T Consensus 147 ~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~~ 179 (421)
T PRK08596 147 QSVIGEEVGEAGTLQCCERGY---DADFAVVVDTSD 179 (421)
T ss_pred EEEeccccCCcCHHHHHhcCC---CCCEEEECCCCC
Confidence 999999999999999988642 357788888643
No 12
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.47 E-value=4.5e-13 Score=143.63 Aligned_cols=126 Identities=23% Similarity=0.249 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccc
Q 008900 55 RAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRN 127 (549)
Q Consensus 55 ra~~~l~~La~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~ 127 (549)
|.++.+++++ .++. |...|+++.++++||.++|++.| ++++++.
T Consensus 2 ~~~~~~~~~~-~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G------~~~~~~~---------------------- 52 (401)
T TIGR01879 2 RLWETLMWLG-EVGADPAGGMTRLALSPEDREAQDLFKKRMRAAG------LEVRFDE---------------------- 52 (401)
T ss_pred hHHHHHHHHh-cccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCC------CEEEEec----------------------
Confidence 6788899998 6754 33447777899999999999999 6555532
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----CC
Q 008900 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL-----FM 202 (549)
Q Consensus 128 ~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~-----gl 202 (549)
..||+++++|+++ +.+.|++++|+|+||. .|..|+..|++++|++++.|++.+.+|+++|.|+++.+||. ++
T Consensus 53 ~~nl~a~~~g~~~--~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~ 129 (401)
T TIGR01879 53 VGNLIGRKEGTEP--PLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGM 129 (401)
T ss_pred CCcEEEEecCCCC--CCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCccccc
Confidence 2499999988642 3478999999999995 37789999999999999999999999999999999999997 88
Q ss_pred cchHHHHhhc
Q 008900 203 LGAHGFMKAH 212 (549)
Q Consensus 203 ~GS~~f~~~~ 212 (549)
.||+.++.+.
T Consensus 130 ~Gs~~~~~~~ 139 (401)
T TIGR01879 130 WGSRNMVGLA 139 (401)
T ss_pred ccHHHHhccc
Confidence 9999998644
No 13
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.47 E-value=1.7e-12 Score=139.57 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
+++.+.+++|. +|.+- .+. ++++++.+||.++|+++| ++++.+.... ....|++
T Consensus 37 ~~~~~~l~~lv-~i~S~-s~~~~~~~~~~~~l~~~L~~~G------~~v~~~~~~~-----------------~~~~~li 91 (410)
T PRK06133 37 PAYLDTLKELV-SIESG-SGDAEGLKQVAALLAERLKALG------AKVERAPTPP-----------------SAGDMVV 91 (410)
T ss_pred HHHHHHHHHHH-cCCCC-CCCHHHHHHHHHHHHHHHHhCC------CeEEEEccCC-----------------CCCCeEE
Confidence 35666677777 55442 222 334589999999999998 5554432110 1125999
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC-----------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFN 195 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~ 195 (549)
++++|++ .+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|+|+|.
T Consensus 92 a~~~g~~----~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~ 167 (410)
T PRK06133 92 ATFKGTG----KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFN 167 (410)
T ss_pred EEECCCC----CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 9997742 367999999999984 4689999999999999999999887778889999999
Q ss_pred CcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 196 GAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 196 ~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
.+||.|..|++.++++.. .+..++|+.|...
T Consensus 168 ~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~~ 198 (410)
T PRK06133 168 PDEETGSPGSRELIAELA--AQHDVVFSCEPGR 198 (410)
T ss_pred CCcccCCccHHHHHHHHh--ccCCEEEEeCCCC
Confidence 999999999999998643 3467888888554
No 14
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.46 E-value=4.6e-13 Score=150.40 Aligned_cols=127 Identities=18% Similarity=0.136 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHHhcCC----------CCCCChhHHHHHHHHHHHHHcccccCCCce-eEEEEeeeecCcccceecccc
Q 008900 52 SEARAIQHVRVLADEIGD----------RQEGRPGLREAAVYIKTQLEGIKERAGPKF-RIEIEENVVNGSFNMIFLGHS 120 (549)
Q Consensus 52 s~era~~~l~~La~~ig~----------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~-~vev~~~~~~g~~~~~~~~~~ 120 (549)
-.+|.++.+++|+ +|+. |...|++..++++|+.++++++| + ++++|.
T Consensus 179 ~~~r~~~~~~~l~-~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~G------l~~v~~D~--------------- 236 (591)
T PRK13590 179 LGNDVWDWAERLA-AHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCG------FDEVHIDA--------------- 236 (591)
T ss_pred HHHHHHHHHHHHh-cccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcC------CCeeeECC---------------
Confidence 4678999999999 5653 33448888999999999999999 5 555542
Q ss_pred ccccccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 008900 121 ISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (549)
Q Consensus 121 ~~~~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~ 200 (549)
..|++++++|+++ ..+.|++++|+|||+. .|..|+..||+++||++|.|++.+.+++++|.+++|.+||.
T Consensus 237 -------~GNl~~~~~g~~~--~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg 306 (591)
T PRK13590 237 -------VGNVVGRYKGSTP--QAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEG 306 (591)
T ss_pred -------CCCEEEEecCCCC--CCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCcc
Confidence 3599999998753 3478999999999995 46789999999999999999999988999999999999997
Q ss_pred -----CCcchHHHHh
Q 008900 201 -----FMLGAHGFMK 210 (549)
Q Consensus 201 -----gl~GS~~f~~ 210 (549)
++.||+.+.-
T Consensus 307 ~rF~~~~~GS~~~~G 321 (591)
T PRK13590 307 QRYKATFLGSGALIG 321 (591)
T ss_pred ccCCccccchHHHhC
Confidence 5999998764
No 15
>PRK07473 carboxypeptidase; Provisional
Probab=99.46 E-value=1.9e-12 Score=137.87 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=115.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccce
Q 008900 51 FSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (549)
Q Consensus 51 fs~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~N 130 (549)
++.+++.+.+++|. +|.+.+...++..+..+|+.++|+++| +++++..... | ...|
T Consensus 8 ~~~~~~~~~l~~Lv-~i~S~s~~~~~~~~~~~~l~~~l~~~G------~~~~~~~~~~-~----------------~~~~ 63 (376)
T PRK07473 8 FDSEAMLAGLRPWV-ECESPTWDAAAVNRMLDLAARDMAIMG------ATIERIPGRQ-G----------------FGDC 63 (376)
T ss_pred cCHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHHHcC------CeEEEecCCC-C----------------CCCe
Confidence 45788999999999 676643322333478899999999998 5555432110 1 1248
Q ss_pred EEEEEeCCCCCCCCCeEEEeeecCCCCC-----------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 008900 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (549)
Q Consensus 131 Vi~~i~G~~~~~~~~~Vll~aH~Dsv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~fl 193 (549)
+++++++.+ ...+.|++++|+|+||+ ++|+.|+|+|++++|.+++.|.+.+.+++.+|.|+
T Consensus 64 ~~~~~~~~~--~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~ 141 (376)
T PRK07473 64 VRARFPHPR--QGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVL 141 (376)
T ss_pred EEEEeCCCC--CCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 999987542 13467999999999953 57999999999999999999988776667789999
Q ss_pred EeCcccCCCcchHHHHhhcCccCcccEEEEeccCCC
Q 008900 194 FNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGT 229 (549)
Q Consensus 194 f~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G~ 229 (549)
+..+||.|..|++.+++++.. +..++|..|..+.
T Consensus 142 ~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~~ 175 (376)
T PRK07473 142 FTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGRP 175 (376)
T ss_pred EeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCCC
Confidence 999999999999999986532 4578888997653
No 16
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.45 E-value=4.9e-13 Score=150.13 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHHHhcC----------CCCCCChhHHHHHHHHHHHHHcccccCCCcee-EEEEeeeecCcccceecccc
Q 008900 52 SEARAIQHVRVLADEIG----------DRQEGRPGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHS 120 (549)
Q Consensus 52 s~era~~~l~~La~~ig----------~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~ 120 (549)
..+|.++.+++|+ +|| .|...|++..++++|+.+++++.| .+ +++|.
T Consensus 179 ~~~r~~~~l~~l~-~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~G------l~~v~~D~--------------- 236 (591)
T PRK13799 179 IGADVMDWAEDIA-AHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAG------FDEVEIDA--------------- 236 (591)
T ss_pred HHHHHHHHHHHHH-hccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CCeEeECC---------------
Confidence 6789999999999 686 255668888899999999999999 55 66653
Q ss_pred ccccccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 008900 121 ISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (549)
Q Consensus 121 ~~~~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~ 200 (549)
..||+++++|+++ +.|.|++++|+|||+. .|.-|+..||+++||++|.|++.+.+++++|.++.|.+||.
T Consensus 237 -------~gNv~~~~~g~~~--~~p~v~~gSHlDTV~~-gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg 306 (591)
T PRK13799 237 -------VGNVVGRYKAADD--DAKTLITGSHYDTVRN-GGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEEEG 306 (591)
T ss_pred -------CCCEEEEcCCCCC--CCCeEEEeccccccCC-CCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCc
Confidence 3599999998753 4578999999999985 67889999999999999999999999999999999999997
Q ss_pred -----CCcchHHHHh
Q 008900 201 -----FMLGAHGFMK 210 (549)
Q Consensus 201 -----gl~GS~~f~~ 210 (549)
++.||+.+.-
T Consensus 307 ~rF~~~~~GS~~~~G 321 (591)
T PRK13799 307 QRFKATFLGSGALIG 321 (591)
T ss_pred cCCCccccchHHHhC
Confidence 8999999974
No 17
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.45 E-value=9.8e-13 Score=141.54 Aligned_cols=130 Identities=27% Similarity=0.294 Sum_probs=107.3
Q ss_pred CcHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccc
Q 008900 51 FSEARAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISL 123 (549)
Q Consensus 51 fs~era~~~l~~La~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~ 123 (549)
.+++++++++++|+ +||+ |+..|.++.++++||.++|+++| ++++++.
T Consensus 4 ~~~~~~~~~~~~l~-~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g------~~~~~~~------------------ 58 (413)
T PRK09290 4 IDAERLWARLDELA-KIGATPDGGVTRLALSPEDLQARDLFAEWMEAAG------LTVRVDA------------------ 58 (413)
T ss_pred cCHHHHHHHHHHHh-cccCCCCCceeeccCCHHHHHHHHHHHHHHHHcC------CEEEEcC------------------
Confidence 45789999999999 7865 55667777799999999999998 5554421
Q ss_pred cccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC---
Q 008900 124 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL--- 200 (549)
Q Consensus 124 ~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~--- 200 (549)
..|++++++|.++ +.+.|++++|+|+||. .|..|++.|+|+++++++.|.+.+.+|+++|.|+++.+||.
T Consensus 59 ----~~nl~a~~~g~~~--~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~ 131 (413)
T PRK09290 59 ----VGNLFGRLEGRDP--DAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRF 131 (413)
T ss_pred ----CCcEEEEecCCCC--CCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccc
Confidence 2499999977431 2467999999999995 46679999999999999999998888899999999999998
Q ss_pred --CCcchHHHHhhc
Q 008900 201 --FMLGAHGFMKAH 212 (549)
Q Consensus 201 --gl~GS~~f~~~~ 212 (549)
|+.|++.+++++
T Consensus 132 g~~~~G~~~~~~~~ 145 (413)
T PRK09290 132 GPAMLGSRVFTGAL 145 (413)
T ss_pred cCccccHHHHHccc
Confidence 578999887654
No 18
>PRK08262 hypothetical protein; Provisional
Probab=99.43 E-value=2.9e-12 Score=140.71 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=112.4
Q ss_pred HHHHHHHHhhccCCC---CCCCCCcCcCcHHHHHHHHHHHHHhcCCCCCCChhH-------HHHHHHHHHHHHcccccCC
Q 008900 27 SALVYSIVHLKFVKP---LDSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGL-------REAAVYIKTQLEGIKERAG 96 (549)
Q Consensus 27 ~~~v~~~~~~~~~~p---~~~~~~~~~fs~era~~~l~~La~~ig~R~~gS~~~-------e~a~~yl~~~l~~ig~~~~ 96 (549)
+.+++.+.+.|.... .|+.+ +-.++.+++.+.+++|. +|.+-... +++ .+.++||.++++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~L~~lv-~i~S~s~~-~~~~~~~~~~~~~~~~L~~~~~~~g---- 87 (486)
T PRK08262 15 LAAVLAVRTFRFKSRQIDVPAVA-PVAVDEDAAAERLSEAI-RFRTISNR-DRAEDDAAAFDALHAHLEESYPAVH---- 87 (486)
T ss_pred HHHhhhheeEEcccCCCCccccC-CCcCCHHHHHHHHHHhc-ccceeccC-CCCcccHHHHHHHHHHHHHhChhhh----
Confidence 344555555555432 23332 45678899999999999 66653322 211 357889999988877
Q ss_pred CceeEEEEeeeecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeeecCCCCC------------------
Q 008900 97 PKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS------------------ 158 (549)
Q Consensus 97 ~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~------------------ 158 (549)
+.++... .++ .|+++.++|+++ ..+.|++.+|+|+||.
T Consensus 88 --~~~~~~~--~~~------------------~~vv~~~~g~~~--~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~ 143 (486)
T PRK08262 88 --AALEREV--VGG------------------HSLLYTWKGSDP--SLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIA 143 (486)
T ss_pred --ceeEEEE--ECC------------------ccEEEEEECCCC--CCCeEEEECcccccCCCCCCcccCccCCCceEee
Confidence 3333321 111 488888887642 2378999999999985
Q ss_pred -----CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhh
Q 008900 159 -----SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKA 211 (549)
Q Consensus 159 -----spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~ 211 (549)
++|+.|+++|++++|.+++.+.+.+.+++++|+|+|.++||.|..|++.+++.
T Consensus 144 dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 144 DGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 34999999999999999999998877788999999999999998899988864
No 19
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.41 E-value=2.7e-12 Score=137.80 Aligned_cols=129 Identities=22% Similarity=0.240 Sum_probs=106.3
Q ss_pred CcHHHHHHHHHHHHHhcCC------CCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccc
Q 008900 51 FSEARAIQHVRVLADEIGD------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (549)
Q Consensus 51 fs~era~~~l~~La~~ig~------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (549)
.+.+|+++.+++|+ +|+. |+..++++.++++||.++|+++| ++++++.
T Consensus 7 ~~~~~~~~~~~~~~-~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~~------------------- 60 (412)
T PRK12892 7 IDGQRVLDDLMELA-AIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAG------LAVRIDG------------------- 60 (412)
T ss_pred ccHHHHHHHHHHHH-ccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcC------CEEEEcC-------------------
Confidence 45779999999999 6775 34446666689999999999999 5554421
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC----
Q 008900 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL---- 200 (549)
Q Consensus 125 ~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~---- 200 (549)
..|++++++|+++ .+.|++++|+|+||. .|-.|+..|++++|++++.|++.+.+++++|.|+++.+||.
T Consensus 61 ---~~nl~a~~~g~~~---~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~ 133 (412)
T PRK12892 61 ---IGNVFGRLPGPGP---GPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFT 133 (412)
T ss_pred ---CCcEEEEecCCCC---CCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCccccccc
Confidence 2499999988642 367999999999995 35679999999999999999998888999999999999998
Q ss_pred -CCcchHHHHhhc
Q 008900 201 -FMLGAHGFMKAH 212 (549)
Q Consensus 201 -gl~GS~~f~~~~ 212 (549)
++.||+.++.++
T Consensus 134 ~~~~Gs~~~~~~~ 146 (412)
T PRK12892 134 PGFLGSRAYAGRL 146 (412)
T ss_pred CccccHHHHHcCC
Confidence 578999998643
No 20
>PRK07338 hypothetical protein; Provisional
Probab=99.41 E-value=4.7e-12 Score=135.53 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccc-cccccccceE
Q 008900 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSI-SLGYRNHTNI 131 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~-~~~~~~~~NV 131 (549)
.+++.+.|.+|. ++.+-....++.+++++||.++|+++| +++++.... +. .....+. ........|+
T Consensus 16 ~~~~~~~l~~lv-~i~S~s~~~~~~~~~~~~l~~~l~~~G------~~~~~~~~~--~~---~~~~~~~~~~~~~~~~nl 83 (402)
T PRK07338 16 QAPMLEQLIAWA-AINSGSRNLDGLARMAELLADAFAALP------GEIELIPLP--PV---EVIDADGRTLEQAHGPAL 83 (402)
T ss_pred HHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHHHHHHhCC------CcEEEecCC--cc---ccccccccccccCcCCeE
Confidence 355667777777 454321111334588999999999999 554443211 10 0000000 0011233699
Q ss_pred EEEEeCCCCCCCCCeEEEeeecCCCCC-----------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 008900 132 VMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLF 194 (549)
Q Consensus 132 i~~i~G~~~~~~~~~Vll~aH~Dsv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf 194 (549)
+++++|.. ++.|++++|+|+||+ ++|+.|+|+|++++|++++.|.+.+.+++.+|.|+|
T Consensus 84 ~a~~~~~~----~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~ 159 (402)
T PRK07338 84 HVSVRPEA----PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLI 159 (402)
T ss_pred EEEECCCC----CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 99996542 235999999999974 458999999999999999999887777788999999
Q ss_pred eCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 195 NGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 195 ~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
..+||.|..|++.+++++. .+..+.+.+|..+
T Consensus 160 ~~dEE~g~~g~~~~~~~~~--~~~~~~i~~ep~~ 191 (402)
T PRK07338 160 NPDEEIGSPASAPLLAELA--RGKHAALTYEPAL 191 (402)
T ss_pred ECCcccCChhhHHHHHHHh--ccCcEEEEecCCC
Confidence 9999999999999998764 2456778888743
No 21
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.41 E-value=2.8e-12 Score=137.83 Aligned_cols=129 Identities=29% Similarity=0.304 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccc
Q 008900 52 SEARAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (549)
Q Consensus 52 s~era~~~l~~La~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (549)
+.+++.+++++|. +|.+ |..+|.++.++.+||.++|+++| ++++++.
T Consensus 8 ~~~~~~~~l~~l~-~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G------~~~~~~~------------------- 61 (412)
T PRK12893 8 NGERLWDSLMALA-RIGATPGGGVTRLALTDEDREARDLLAQWMEEAG------LTVSVDA------------------- 61 (412)
T ss_pred CHHHHHHHHHHHh-cccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcC------CEEEEcC-------------------
Confidence 5688999999999 6663 33456667799999999999999 5554421
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC---
Q 008900 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF--- 201 (549)
Q Consensus 125 ~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~g--- 201 (549)
..|++++++|.++ +.+.|++++|+|+||. .|..|+++|++++|++++.|++.+.+++++|+|+|+.+||.|
T Consensus 62 ---~~n~~a~~~g~~~--~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~ 135 (412)
T PRK12893 62 ---IGNLFGRRAGTDP--DAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFA 135 (412)
T ss_pred ---CCcEEEEeCCCCC--CCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccc
Confidence 1399999987532 3578999999999994 467899999999999999999988888999999999999986
Q ss_pred --CcchHHHHhhc
Q 008900 202 --MLGAHGFMKAH 212 (549)
Q Consensus 202 --l~GS~~f~~~~ 212 (549)
+.|+..+..++
T Consensus 136 ~~~~G~~~~~~~~ 148 (412)
T PRK12893 136 PAMLGSGVFTGAL 148 (412)
T ss_pred cccccHHHHhCcC
Confidence 88998887654
No 22
>PRK07906 hypothetical protein; Provisional
Probab=99.40 E-value=3.2e-12 Score=138.01 Aligned_cols=129 Identities=30% Similarity=0.456 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCCCCC---ChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEE
Q 008900 57 IQHVRVLADEIGDRQEG---RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (549)
Q Consensus 57 ~~~l~~La~~ig~R~~g---S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~ 133 (549)
.+.+++|. +|.+...+ .++++++++||.++++++| ++++.++.. .+..|+++
T Consensus 2 ~~ll~~Lv-~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G------~~~~~~~~~------------------~~~~nv~~ 56 (426)
T PRK07906 2 VDLCSELI-RIDTTNTGDGTGKGEREAAEYVAEKLAEVG------LEPTYLESA------------------PGRANVVA 56 (426)
T ss_pred hHHHHHHh-cccccCCCCCCCchHHHHHHHHHHHHHhCC------CCeEEeecC------------------CCceEEEE
Confidence 45677887 56654322 2456689999999999999 555544311 12369999
Q ss_pred EEeCCCCCCCCCeEEEeeecCCCCC--------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 008900 134 RISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (549)
Q Consensus 134 ~i~G~~~~~~~~~Vll~aH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~fl 193 (549)
+++|+++ ..+.|++++|+|+||. ++|+.||++|++++|++++.+++.+.+++++|.|+
T Consensus 57 ~~~g~~~--~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~ 134 (426)
T PRK07906 57 RLPGADP--SRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFA 134 (426)
T ss_pred EEeCCCC--CCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEE
Confidence 9987632 3467999999999985 46999999999999999999998888899999999
Q ss_pred EeCcccCCC-cchHHHHhhc
Q 008900 194 FNGAEELFM-LGAHGFMKAH 212 (549)
Q Consensus 194 f~~~EE~gl-~GS~~f~~~~ 212 (549)
|+.+||.|. .|++.+++++
T Consensus 135 ~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 135 FVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred EecCcccchhhhHHHHHHHH
Confidence 999999864 6999998765
No 23
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.39 E-value=6.2e-12 Score=133.36 Aligned_cols=141 Identities=23% Similarity=0.271 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEE
Q 008900 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
++++.+.+++|. ++.+ -|.++.++++||.++|+++| ++++.+... ....|++
T Consensus 1 ~~~~~~~l~~Lv-~i~s---~s~~e~~~~~~l~~~l~~~G------~~~~~~~~~------------------~~~~~l~ 52 (377)
T PRK08588 1 EEEKIQILADIV-KINS---VNDNEIEVANYLQDLFAKHG------IESKIVKVN------------------DGRANLV 52 (377)
T ss_pred ChHHHHHHHHHh-cCCC---CCCcHHHHHHHHHHHHHHCC------CceEEEecC------------------CCCceEE
Confidence 367888899998 5554 23345689999999999998 555443211 1135999
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEE
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 191 (549)
+++ |.+ ++.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++++|.
T Consensus 53 a~~-g~~----~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 127 (377)
T PRK08588 53 AEI-GSG----SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIR 127 (377)
T ss_pred EEe-CCC----CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEE
Confidence 998 432 267999999999985 358899999999999999999988878889999
Q ss_pred EEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 192 FLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 192 flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
|+|..+||.|..|++.++++. +.++..++|..|..
T Consensus 128 l~~~~dEE~g~~G~~~~~~~~-~~~~~d~~i~~ep~ 162 (377)
T PRK08588 128 LLATAGEEVGELGAKQLTEKG-YADDLDALIIGEPS 162 (377)
T ss_pred EEEEcccccCchhHHHHHhcC-ccCCCCEEEEecCC
Confidence 999999999999999999853 34456677777754
No 24
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.39 E-value=8.6e-12 Score=134.45 Aligned_cols=155 Identities=18% Similarity=0.104 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~ 133 (549)
+++.+.+++|. +|.+-.....+++++++||.++|+++| ++++.... .+. +....+....|+++
T Consensus 14 ~~~~~~l~~Lv-~i~S~~~~g~~e~~~~~~l~~~l~~~G------~~~~~~~~--~~~--------~~~~~~~~~~nlia 76 (427)
T PRK13013 14 DDLVALTQDLI-RIPTLNPPGRAYREICEFLAARLAPRG------FEVELIRA--EGA--------PGDSETYPRWNLVA 76 (427)
T ss_pred HHHHHHHHHHh-cCCCcCCCCccHHHHHHHHHHHHHHCC------CceEEEec--CCC--------CcccccCCcceEEE
Confidence 45677788887 564422111234589999999999999 55554321 110 00001223469999
Q ss_pred EEeCCCCCCCCCeEEEeeecCCCCC-------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 008900 134 RISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLF 194 (549)
Q Consensus 134 ~i~G~~~~~~~~~Vll~aH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf 194 (549)
+++|++ +++.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++++|+|+|
T Consensus 77 ~~~g~~---~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~ 153 (427)
T PRK13013 77 RRQGAR---DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISG 153 (427)
T ss_pred EecCCC---CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEE
Confidence 998753 3468999999999984 459999999999999999999988777889999999
Q ss_pred eCcccCCCcchHHHHhhcCccC--cccEEEEeccCC
Q 008900 195 NGAEELFMLGAHGFMKAHKWRD--SVGAVINVEASG 228 (549)
Q Consensus 195 ~~~EE~gl~GS~~f~~~~~~~~--~v~a~INLD~~G 228 (549)
..+||.|..|...++.+....+ ++.++|..|..+
T Consensus 154 ~~dEE~g~~~g~~~l~~~~~~~~~~~d~~i~~ep~~ 189 (427)
T PRK13013 154 TADEESGGFGGVAYLAEQGRFSPDRVQHVIIPEPLN 189 (427)
T ss_pred EeccccCChhHHHHHHhcCCccccCCCEEEEecCCC
Confidence 9999998775554444343222 557778777543
No 25
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.38 E-value=7.1e-12 Score=132.91 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeC
Q 008900 58 QHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISS 137 (549)
Q Consensus 58 ~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G 137 (549)
+.+++|. +|.+....+.++.++++||.++|+++| ++++...... +. .....|+++.++|
T Consensus 2 ~~l~~lv-~i~s~~~~~~~e~~~a~~l~~~l~~~G------~~~~~~~~~~-~~-------------~~~~~~~~~~~~g 60 (375)
T TIGR01910 2 ELLKDLI-SIPSVNPPGGNEETIANYIKDLLREFG------FSTDVIEITD-DR-------------LKVLGKVVVKEPG 60 (375)
T ss_pred hhHHhhh-cCCCCCCCCcCHHHHHHHHHHHHHHCC------CceEEEecCc-hh-------------cccccceEEeccC
Confidence 4566777 555533345566799999999999999 5444432111 10 0112367888877
Q ss_pred CCCCCCCCeEEEeeecCCCCCC---------------------CCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Q 008900 138 TDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNG 196 (549)
Q Consensus 138 ~~~~~~~~~Vll~aH~Dsv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~ 196 (549)
++ +.+.|++.+|+|+||.. +|+.|+++|++++|++++.|.+.+.+++++|.|+|+.
T Consensus 61 ~~---~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 137 (375)
T TIGR01910 61 NG---NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVV 137 (375)
T ss_pred CC---CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEc
Confidence 53 24689999999999863 5899999999999999999998777788999999999
Q ss_pred cccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 197 AEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 197 ~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
+||.|..|++.++++. ..++...+|..|..|
T Consensus 138 ~EE~g~~G~~~~~~~~-~~~~~d~~i~~~~~~ 168 (375)
T TIGR01910 138 DEESGEAGTLYLLQRG-YFKDADGVLIPEPSG 168 (375)
T ss_pred CcccCchhHHHHHHcC-CCCCCCEEEECCCCC
Confidence 9999999999999753 333467777777553
No 26
>PRK06446 hypothetical protein; Provisional
Probab=99.36 E-value=1e-11 Score=134.64 Aligned_cols=143 Identities=22% Similarity=0.312 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~ 133 (549)
+++.+.+++|. +|.+-..+.++.+++++||.+.|+++| +++++.+. .| ..|+++
T Consensus 2 ~~~~~~l~eLV-~i~S~s~~~~~~~~~a~~l~~~l~~~G------~~ve~~~~--~~-----------------~~~lia 55 (436)
T PRK06446 2 DEELYTLIEFL-KKPSISATGEGIEETANYLKDTMEKLG------IKANIERT--KG-----------------HPVVYG 55 (436)
T ss_pred hhHHHHHHHHh-CCCCCCCCcHhHHHHHHHHHHHHHHCC------CeEEEEec--CC-----------------CCEEEE
Confidence 45778888888 566532211233689999999999998 55555431 11 259999
Q ss_pred EEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEE
Q 008900 134 RISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (549)
Q Consensus 134 ~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~f 192 (549)
++++. +.+.|++++|+|+||. ++|+.|+|+|++++|.+++.+.+.+ +++.+|.|
T Consensus 56 ~~~~~----~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~ 130 (436)
T PRK06446 56 EINVG----AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKF 130 (436)
T ss_pred EecCC----CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEE
Confidence 98532 2467999999999874 4599999999999999999887654 56789999
Q ss_pred EEeCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 193 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 193 lf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
++.++||.|..|++.++++++...+..++|. |..+
T Consensus 131 ~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~-E~~~ 165 (436)
T PRK06446 131 LYEGEEEIGSPNLEDFIEKNKNKLKADSVIM-EGAG 165 (436)
T ss_pred EEEcccccCCHhHHHHHHHHHHHhCCCEEEE-CCCC
Confidence 9999999999999999987642223455664 6544
No 27
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.36 E-value=3.4e-11 Score=124.85 Aligned_cols=242 Identities=21% Similarity=0.256 Sum_probs=132.4
Q ss_pred cCcHHHHHHHHHHHHH---hcCCCCCCChhH-HHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccc
Q 008900 50 RFSEARAIQHVRVLAD---EIGDRQEGRPGL-REAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGY 125 (549)
Q Consensus 50 ~fs~era~~~l~~La~---~ig~R~~gS~~~-e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~ 125 (549)
..+-+..++|+..|-+ .|..|+..-... --+..+ ++++++.+ ..+++.+|.+...|..
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~~--~~~~~L~d---g~Y~V~IdS~l~~G~L------------- 117 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLSH--NQLDALPD---GEYEVVIDSTLEDGSL------------- 117 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE--H--HHHHT--S---SEEEEEEEEEEES-EE-------------
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccCH--HHHhhCCC---CceEEEEeeeecCCce-------------
Confidence 3566777788877753 255554332211 111111 33444432 2389999988887742
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcch
Q 008900 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGA 205 (549)
Q Consensus 126 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS 205 (549)
.---..++|+ .++.|++++|.++.. -|+||-||++++.+++|.|++. +++.+.+|+|-. +-+||
T Consensus 118 ---~ygE~~ipG~----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P----eTIGs 181 (386)
T PF09940_consen 118 ---TYGEFVIPGE----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP----ETIGS 181 (386)
T ss_dssp ---EEEEEEE--S----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----TTHHH
T ss_pred ---eEEEEEecCC----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----ccHHH
Confidence 1222456875 356799999999943 6999999999999999999876 456999999985 67999
Q ss_pred HHHHhhcC--ccCcccEEEEeccCCCCCCceEEecCCC-Cchh-hHhhhhccccccccc-cccccCCCCCCCchHHHhhc
Q 008900 206 HGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQSGPS-SWPS-SVYAQSAIYPMAHSA-AQDVFPVIPGDTDYRIFSQD 280 (549)
Q Consensus 206 ~~f~~~~~--~~~~v~a~INLD~~G~gg~~~lfq~~p~-~~~~-~~y~~~~~~p~~~~~-~~~~f~~ips~sD~~~F~~~ 280 (549)
-.|+.+|. .++++++.++|.++|..+ ..-++.++. .-.+ ++.. |-..+.- .-..+...|.++|.|+|..-
T Consensus 182 I~yLskn~~~l~~~v~~G~vLtcvGD~~-~~syk~Sr~g~~~iDr~~~----~vl~~~~~~~~~~~F~~~GsDERQfcSP 256 (386)
T PF09940_consen 182 ITYLSKNLDELKKNVKAGLVLTCVGDDG-AYSYKRSRRGNTLIDRAAA----HVLKHSGPNFKIYDFLPRGSDERQFCSP 256 (386)
T ss_dssp HHHHHH-GGGGGG-EEEEEE--S--SSS--EEEE--TTSSSHHHHHHH----HHHHHSSS-EEEE---S-SSTHHHHTST
T ss_pred HHHHHHCHHHHhhheeeeEEEEEecCCC-CcceecCCCCCcHHHHHHH----HHHHhcCCCceEecccccCCCcceeecC
Confidence 99999884 345699999999999766 444554443 2222 2221 1111110 01223567789999999741
Q ss_pred CCCCcEEEEEEec-CCC-cCCCccCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 008900 281 YGDIPGLDIIFLI-GGY-YYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNS 330 (549)
Q Consensus 281 ~~giPgld~a~~~-~~y-~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~~ 330 (549)
--++|-..+.-.. +.| .|||+.|+++.|+|+.|+..-+.+..+++.+.+.
T Consensus 257 G~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 257 GFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp TT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 0124433333222 223 9999999999999999999999999999988654
No 28
>PRK07907 hypothetical protein; Provisional
Probab=99.36 E-value=1.7e-11 Score=133.44 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCC---ChhHHHHHHHHHHHHHcccccCCCce-eEEEEeeeecCcccceecccccccccccc
Q 008900 53 EARAIQHVRVLADEIGDRQEG---RPGLREAAVYIKTQLEGIKERAGPKF-RIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~g---S~~~e~a~~yl~~~l~~ig~~~~~~~-~vev~~~~~~g~~~~~~~~~~~~~~~~~~ 128 (549)
.+++.+.+++|. +|.+-... ..+.+++++||.++|+++| + ++++.+ .. ..
T Consensus 17 ~~~~~~ll~~LV-~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~~--~~-----------------~~ 70 (449)
T PRK07907 17 LPRVRADLEELV-RIPSVAADPFRREEVARSAEWVADLLREAG------FDDVRVVS--AD-----------------GA 70 (449)
T ss_pred HHHHHHHHHHHh-cCCCCCCCccchhhHHHHHHHHHHHHHHcC------CceEEEEe--cC-----------------CC
Confidence 356778888888 56653211 1234588999999999998 3 333332 11 13
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCC
Q 008900 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 187 (549)
Q Consensus 129 ~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~ 187 (549)
.|++++++|+. +.+.|++++|+|+||. ++|+.|+++|++++|.+++.| +.+++
T Consensus 71 ~nl~a~~~~~~---~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~ 144 (449)
T PRK07907 71 PAVIGTRPAPP---GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLP 144 (449)
T ss_pred CEEEEEecCCC---CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCC
Confidence 59999998742 2468999999999985 459999999999999999999 34567
Q ss_pred CCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 188 RPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 188 ~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
++|.|++.++||.|..|++.++++++...+..++|..|..+
T Consensus 145 ~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 185 (449)
T PRK07907 145 VGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSGN 185 (449)
T ss_pred CcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCCc
Confidence 89999999999999999999998764333457788888654
No 29
>PRK09104 hypothetical protein; Validated
Probab=99.35 E-value=2.3e-11 Score=132.88 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccc
Q 008900 53 EARAIQHVRVLADEIGDRQEGR---PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS---~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~ 129 (549)
.+++.+.+++|. +|.+-.... ++.+++++||.++++++| +++++.+. .+ ..
T Consensus 16 ~~~~~~~L~~lv-~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G------~~v~~~~~--~~-----------------~~ 69 (464)
T PRK09104 16 LDASLERLFALL-RIPSISTDPAYAADCRKAADWLVADLASLG------FEASVRDT--PG-----------------HP 69 (464)
T ss_pred HHHHHHHHHHHh-cCCCCCCCccchHHHHHHHHHHHHHHHHCC------CeEEEEec--CC-----------------CC
Confidence 456777788887 555422111 223578999999999998 55555331 11 25
Q ss_pred eEEEEEeCCCCCCCCCeEEEeeecCCCCC--------------------------CCCCCCCchHHHHHHHHHHHHHhcC
Q 008900 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------------SPGAGDCGSCVASMLELARLTIDSG 183 (549)
Q Consensus 130 NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------------------spGA~Dd~sgva~~LE~ar~L~~~~ 183 (549)
||+++++|+++ ..+.|++++|+|+||. ++|+.|||.|++++|++++.|.+.+
T Consensus 70 ~l~a~~~g~~~--~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~ 147 (464)
T PRK09104 70 MVVAHHEGPTG--DAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVT 147 (464)
T ss_pred EEEEEecCCCC--CCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhc
Confidence 99999987532 3578999999999863 2478999999999999999999876
Q ss_pred CCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 184 WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 184 ~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
.+++.+|.|++.++||.|..|...++.+.....+..++|..|..+
T Consensus 148 ~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 192 (464)
T PRK09104 148 GSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDTGM 192 (464)
T ss_pred CCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCCCC
Confidence 567789999999999999999999988643223568899999543
No 30
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.34 E-value=2.4e-11 Score=130.12 Aligned_cols=148 Identities=22% Similarity=0.275 Sum_probs=111.3
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccc
Q 008900 50 RFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (549)
Q Consensus 50 ~fs~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~ 129 (549)
.+-.+++.+.|++|. +|.+.. +..+++++++|+.++++++| ++++..+.. .| ..
T Consensus 5 ~~~~~~~~~~l~~lv-~ipS~~-~~~~~~~~~~~l~~~l~~~G------~~~~~~~~~-~g-----------------~~ 58 (400)
T TIGR01880 5 KWEEDIAVTRFREYL-RINTVQ-PNPDYAACVDFLIKQADELG------LARKTIEFV-PG-----------------KP 58 (400)
T ss_pred ccchHHHHHHHHHHh-ccCccC-CCccHHHHHHHHHHHHHhCC------CceeEEEec-CC-----------------ce
Confidence 456788899999999 666643 23344689999999999999 444332211 11 25
Q ss_pred eEEEEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCC
Q 008900 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 188 (549)
Q Consensus 130 NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~ 188 (549)
|++++++|+++ ..+.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+.++++
T Consensus 59 ~l~~~~~g~~~--~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~ 136 (400)
T TIGR01880 59 VVVLTWPGSNP--ELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKR 136 (400)
T ss_pred eEEEEEecCCC--CCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999987542 2368999999999984 358999999999999999999988778889
Q ss_pred CEEEEEeCcccCCC-cchHHHHhhcCccCcccEEEEecc
Q 008900 189 PIIFLFNGAEELFM-LGAHGFMKAHKWRDSVGAVINVEA 226 (549)
Q Consensus 189 ~I~flf~~~EE~gl-~GS~~f~~~~~~~~~v~a~INLD~ 226 (549)
+|.|+|..+||.|. .|++.++++... ..++..+.+|.
T Consensus 137 ~v~l~~~~dEE~g~~~G~~~~~~~~~~-~~~~~~~~~d~ 174 (400)
T TIGR01880 137 TIHISFVPDEEIGGHDGMEKFAKTDEF-KALNLGFALDE 174 (400)
T ss_pred eEEEEEeCCcccCcHhHHHHHHHhhhc-cCCceEEEEcC
Confidence 99999999999875 599988875332 23455555553
No 31
>PRK08201 hypothetical protein; Provisional
Probab=99.32 E-value=2.6e-11 Score=132.12 Aligned_cols=146 Identities=21% Similarity=0.259 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHcccccCCCcee-EEEEeeeecCcccceeccccccccccccc
Q 008900 54 ARAIQHVRVLADEIGDRQEGR---PGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS---~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~~~~~~~~~~ 129 (549)
+++.+.+++|. +|.+-..+. +++.++++||.++|+++| ++ +++++. .| ..
T Consensus 14 ~~~~~~l~~LV-~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G------~~~~~~~~~--~~-----------------~~ 67 (456)
T PRK08201 14 EAHLEELKEFL-RIPSISALSEHKEDVRKAAEWLAGALEKAG------LEHVEIMET--AG-----------------HP 67 (456)
T ss_pred HHHHHHHHHHh-cCCCCCCCCcchHHHHHHHHHHHHHHHHcC------CCeEEEEec--CC-----------------CC
Confidence 55667777777 555533221 234478999999999998 43 344321 11 24
Q ss_pred eEEEEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCC
Q 008900 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 188 (549)
Q Consensus 130 NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~ 188 (549)
||++++.|.. +.+.|++++|+|+||. ++|+.|+|+|+|+++++++.+.+.+..+++
T Consensus 68 ~l~a~~~~~~---~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~ 144 (456)
T PRK08201 68 IVYADWLHAP---GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPV 144 (456)
T ss_pred EEEEEecCCC---CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 8999887642 3467999999999874 459999999999999999999876556778
Q ss_pred CEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 189 PIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 189 ~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
+|.|++..+||.|..|+..++++++..-+..++|..|...
T Consensus 145 ~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~~ 184 (456)
T PRK08201 145 NVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTTL 184 (456)
T ss_pred CEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCCc
Confidence 9999999999999999999998653212346788888654
No 32
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.31 E-value=6e-11 Score=126.47 Aligned_cols=150 Identities=21% Similarity=0.210 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC--hhHHHHHHHHHHHHHcccccCCCcee-EEEEeeeecCcccceeccccccccccccce
Q 008900 54 ARAIQHVRVLADEIGDRQEGR--PGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS--~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~~~~~~~~~~N 130 (549)
+++.+.+++|. +|.+-.... .++.++++||.++|+++| ++ ++..... ..+ .......|
T Consensus 5 ~~~~~~l~~lv-~i~s~s~~~~~~~e~~~~~~l~~~l~~~G------~~~~~~~~~~--~~~----------~~~~~~~n 65 (400)
T PRK13983 5 DEMIELLSELI-AIPAVNPDFGGEGEKEKAEYLESLLKEYG------FDEVERYDAP--DPR----------VIEGVRPN 65 (400)
T ss_pred HHHHHHHHHHh-CcCCCCCCCCCccHHHHHHHHHHHHHHcC------CceEEEEecC--Ccc----------cccCCCcc
Confidence 46788888888 555532111 245689999999999999 44 3332210 000 00011369
Q ss_pred EEEEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008900 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRP 189 (549)
Q Consensus 131 Vi~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 189 (549)
++++++|.+ +.+.|++++|+|+||. ++|+.|++.|++++|++++.|.+.+.+++++
T Consensus 66 l~~~~~g~~---~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~ 142 (400)
T PRK13983 66 IVAKIPGGD---GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYN 142 (400)
T ss_pred EEEEecCCC---CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCc
Confidence 999998753 2358999999999985 3689999999999999999999887788999
Q ss_pred EEEEEeCcccCCCc-chHHHHhhcCc-cCcccEEEEec
Q 008900 190 IIFLFNGAEELFML-GAHGFMKAHKW-RDSVGAVINVE 225 (549)
Q Consensus 190 I~flf~~~EE~gl~-GS~~f~~~~~~-~~~v~a~INLD 225 (549)
|.|+|..+||.|.. |++.++++++. .....+++..|
T Consensus 143 v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 143 LGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred EEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 99999999998885 88888876431 12345556555
No 33
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.31 E-value=3.1e-11 Score=127.01 Aligned_cols=134 Identities=22% Similarity=0.153 Sum_probs=104.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceE
Q 008900 52 SEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (549)
Q Consensus 52 s~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NV 131 (549)
.++++.+.+++|. +|.+ .|..++++++|+.++|+++| ++++.+. ..|+
T Consensus 4 ~~~~~~~~l~~Lv-~i~s---~s~~e~~~~~~l~~~l~~~G------~~~~~~~----------------------~~n~ 51 (348)
T PRK04443 4 SALEARELLKGLV-EIPS---PSGEEAAAAEFLVEFMESHG------REAWVDE----------------------AGNA 51 (348)
T ss_pred chHHHHHHHHHHH-cCCC---CCCChHHHHHHHHHHHHHcC------CEEEEcC----------------------CCcE
Confidence 3567888999998 5655 23455689999999999998 5544321 2489
Q ss_pred EEEEeCCCCCCCCCeEEEeeecCCCCC------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCccc
Q 008900 132 VMRISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEE 199 (549)
Q Consensus 132 i~~i~G~~~~~~~~~Vll~aH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE 199 (549)
++++++. .+.|++++|+|+||. ++|+.|+++|+++++++++.| + .+++++|.|++..+||
T Consensus 52 i~~~~~~-----~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~dEE 123 (348)
T PRK04443 52 RGPAGDG-----PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVEEE 123 (348)
T ss_pred EEEcCCC-----CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcccc
Confidence 9987431 367999999999974 579999999999999999999 3 4678899999999999
Q ss_pred CCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 200 LFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 200 ~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
.|..|...++.+. . +..++|..|..+
T Consensus 124 ~g~~~~~~~l~~~-~--~~d~~iv~Ept~ 149 (348)
T PRK04443 124 APSSGGARLVADR-E--RPDAVIIGEPSG 149 (348)
T ss_pred cCChhHHHHHHhc-c--CCCEEEEeCCCC
Confidence 9988887777643 2 457788888554
No 34
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.29 E-value=5.9e-11 Score=118.19 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=112.7
Q ss_pred CeEEEeeecCCCC----CCCCCCCCchHHHHHHHHHHHHHhc---CCCCCCCEEEEEeCcccCCCcchHHHHhhc---Cc
Q 008900 145 PSVLMNGHFDGPL----SSPGAGDCGSCVASMLELARLTIDS---GWIPPRPIIFLFNGAEELFMLGAHGFMKAH---KW 214 (549)
Q Consensus 145 ~~Vll~aH~Dsv~----~spGA~Dd~sgva~~LE~ar~L~~~---~~~p~~~I~flf~~~EE~gl~GS~~f~~~~---~~ 214 (549)
|.|++.|.+|+.. .+|||.++.+|++++|++++.|.+. ....+++|.|.|+.||.+|.+||+.|+.+. .+
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999974 3799999999999999999999764 235789999999999999999999999643 12
Q ss_pred c-----------CcccEEEEeccCCCCCCceEEec--CCC--Cch---hhHhhhhccccc--cccccc--cccCCCCCCC
Q 008900 215 R-----------DSVGAVINVEASGTGGLDLVCQS--GPS--SWP---SSVYAQSAIYPM--AHSAAQ--DVFPVIPGDT 272 (549)
Q Consensus 215 ~-----------~~v~a~INLD~~G~gg~~~lfq~--~p~--~~~---~~~y~~~~~~p~--~~~~~~--~~f~~ips~s 272 (549)
. ++|..+|.++.+|..+..-++-. ++. +.. .+...+..+.+- .....+ ..-..+|..|
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 2 58999999999997665223332 221 111 111111111111 111111 1113456644
Q ss_pred chHHHhhcCCCCcEEEEEEecCC---CcCCCccCCcCCCCH
Q 008900 273 DYRIFSQDYGDIPGLDIIFLIGG---YYYHTSHDTVDRLLP 310 (549)
Q Consensus 273 D~~~F~~~~~giPgld~a~~~~~---y~YHT~~Dt~d~id~ 310 (549)
...|.+.-.++||+-++-.+.. .+||+.+|+.++++.
T Consensus 161 -~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 -LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred -HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 6667764358999988755543 389999999998865
No 35
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.29 E-value=7.3e-11 Score=127.21 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~ 133 (549)
+++.+.+++|. +|.+ .|.+++++.+||.++|+++| +++++...........+..... ...+....|+++
T Consensus 17 ~~~~~~l~~lv-~ips---~s~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nlia 85 (422)
T PRK06915 17 EEAVKLLKRLI-QEKS---VSGDESGAQAIVIEKLRELG------LDLDIWEPSFKKLKDHPYFVSP-RTSFSDSPNIVA 85 (422)
T ss_pred HHHHHHHHHHH-hCCC---CCcchHHHHHHHHHHHHhcC------CeeEEeecchhhhhcccccCCc-ccccCCCceEEE
Confidence 56778888887 4443 34456689999999999999 5544332110000000000000 001123579999
Q ss_pred EEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEE
Q 008900 134 RISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (549)
Q Consensus 134 ~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~f 192 (549)
+++|++ +.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+|.|
T Consensus 86 ~~~g~~---~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~ 162 (422)
T PRK06915 86 TLKGSG---GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIF 162 (422)
T ss_pred EEcCCC---CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 998753 2468999999999985 4699999999999999999999887778899999
Q ss_pred EEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 193 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 193 lf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
++..+||.|..|+...+.+. + +..++|.-|..
T Consensus 163 ~~~~dEE~g~~G~~~~~~~~-~--~~d~~i~~ep~ 194 (422)
T PRK06915 163 QSVIEEESGGAGTLAAILRG-Y--KADGAIIPEPT 194 (422)
T ss_pred EEecccccCCcchHHHHhcC-c--CCCEEEECCCC
Confidence 99999999888998777642 2 34666666644
No 36
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.29 E-value=4.3e-11 Score=131.35 Aligned_cols=137 Identities=23% Similarity=0.327 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEE
Q 008900 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
.+|+.+.+++|. +|. ++ |.+++++++|+.+++++.| ++++.+. ..|++
T Consensus 3 ~~~~~~~l~~l~-~i~-s~--s~~e~~~~~~l~~~l~~~G------~~~~~~~----------------------~~n~~ 50 (477)
T TIGR01893 3 PSRVFKYFEEIS-KIP-RP--SKNEKEVSNFIVNWAKKLG------LEVKQDE----------------------VGNVL 50 (477)
T ss_pred HHHHHHHHHHHH-cCC-CC--CccHHHHHHHHHHHHHHcC------CeEEEeC----------------------CCeEE
Confidence 478899999999 664 33 5666789999999999998 5555442 24999
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCCC------------------------CCC---CCCchHHHHHHHHHHHHHhcCCC
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLSS------------------------PGA---GDCGSCVASMLELARLTIDSGWI 185 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~s------------------------pGA---~Dd~sgva~~LE~ar~L~~~~~~ 185 (549)
++++|+.+.+..+.|++++|+|+||.+ +|+ .|++.|++++|++++. . ..
T Consensus 51 ~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~-~~ 126 (477)
T TIGR01893 51 IRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N-NL 126 (477)
T ss_pred EEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-CC
Confidence 999875322234789999999999842 355 3999999999998875 2 23
Q ss_pred CCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 186 PPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 186 p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
++++|.++|+.+||.|+.||+.+..+. ......+|.|..+
T Consensus 127 ~~~~i~~~~~~dEE~g~~Gs~~l~~~~---~~~~~~~~~d~~~ 166 (477)
T TIGR01893 127 KHPPLELLFTVDEETGMDGALGLDENW---LSGKILINIDSEE 166 (477)
T ss_pred CCCCEEEEEEeccccCchhhhhcChhh---cCCcEEEEecCCC
Confidence 567999999999999999999987532 2336688888543
No 37
>PRK07079 hypothetical protein; Provisional
Probab=99.28 E-value=6.1e-11 Score=129.80 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCh-hHHHHHHHH----HHHHHcccccCCCceeEEEEeeeecCcccceecccccccccc
Q 008900 52 SEARAIQHVRVLADEIGDRQEGRP-GLREAAVYI----KTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYR 126 (549)
Q Consensus 52 s~era~~~l~~La~~ig~R~~gS~-~~e~a~~yl----~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~ 126 (549)
+++++.+.+++|. +|.+- .+.+ +....++|+ .+.|+++| +++++.+.... .
T Consensus 15 ~~~~~~~~L~~LV-~ipSv-s~~~~~~~~~~~~l~~~~~~~l~~~G------~~~~~~~~~~~----------------~ 70 (469)
T PRK07079 15 DSGAFFADLARRV-AYRTE-SQNPDRAPALRAYLTDEIAPALAALG------FTCRIVDNPVA----------------G 70 (469)
T ss_pred ccHHHHHHHHHHh-ccCCC-CCCcccHHHHHHHHHHHHHHHHHHCC------CeEEEEecCCC----------------C
Confidence 3356888899998 66653 2222 233566665 45788777 55544321100 1
Q ss_pred ccceEEEEEeCCCCCCCCCeEEEeeecCCCCC----------------------CCCCCCCchHHHHHHHHHHHHHhc-C
Q 008900 127 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS----------------------SPGAGDCGSCVASMLELARLTIDS-G 183 (549)
Q Consensus 127 ~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~----------------------spGA~Dd~sgva~~LE~ar~L~~~-~ 183 (549)
+..||++++.|.. +.+.|++++|+|+||. ++|+.|+|+|++++|.+++.+.+. +
T Consensus 71 ~~~~vva~~~~~~---~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~ 147 (469)
T PRK07079 71 GGPFLIAERIEDD---ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARG 147 (469)
T ss_pred CCCEEEEEeCCCC---CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcC
Confidence 2359999986532 2468999999999973 349999999999999999998653 4
Q ss_pred CCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 184 WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 184 ~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
.+++++|+|++.++||.|..|++.++++++...+..++|..|..
T Consensus 148 ~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~~ 191 (469)
T PRK07079 148 GRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDGP 191 (469)
T ss_pred CCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCCC
Confidence 67889999999999999999999999977422235677877753
No 38
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.28 E-value=6.2e-11 Score=124.93 Aligned_cols=128 Identities=24% Similarity=0.328 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEE
Q 008900 55 RAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMR 134 (549)
Q Consensus 55 ra~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~ 134 (549)
|.++.+++|. +|.+ .|.++.++++||.++|+++| ++++.+.... + ..+..|++++
T Consensus 1 ~~~~~~~~l~-~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~~~~~-~--------------~~~~~~~~~~ 55 (361)
T TIGR01883 1 RLKKYFLELI-QIDS---ESGKEKAILTYLKKQITKLG------IPVSLDEVPA-E--------------VSNDNNLIAR 55 (361)
T ss_pred ChHHHHHHHe-ecCC---CCCcHHHHHHHHHHHHHHcC------CEEEEecccc-c--------------cCCCceEEEE
Confidence 3567788887 5554 33456689999999999998 5444432110 0 0124699999
Q ss_pred EeCCCCCCCCCeEEEeeecCCCCC--------------CCCC----CCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Q 008900 135 ISSTDSQDTDPSVLMNGHFDGPLS--------------SPGA----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNG 196 (549)
Q Consensus 135 i~G~~~~~~~~~Vll~aH~Dsv~~--------------spGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~ 196 (549)
++|++ +.+.|++++|+|+||. ++|+ .|+++|++++|++++.|.+.+ .++++|.|+|+.
T Consensus 56 ~~g~~---~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~ 131 (361)
T TIGR01883 56 LPGTV---KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTV 131 (361)
T ss_pred EeCCC---CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEc
Confidence 98763 2467999999999984 3566 899999999999999998765 577899999999
Q ss_pred cccCCCcchHHHHhh
Q 008900 197 AEELFMLGAHGFMKA 211 (549)
Q Consensus 197 ~EE~gl~GS~~f~~~ 211 (549)
+||.|..|++.+.++
T Consensus 132 ~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 132 KEELGLIGMRLFDES 146 (361)
T ss_pred ccccCchhHhHhChh
Confidence 999999999988764
No 39
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.28 E-value=7.3e-11 Score=123.34 Aligned_cols=146 Identities=23% Similarity=0.296 Sum_probs=106.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccce
Q 008900 51 FSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (549)
Q Consensus 51 fs~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~N 130 (549)
-+.+|.+++++--+ ..|.+-.+ -.+++|+.+..++++... ..++... | .++
T Consensus 26 ~~v~~f~eylRi~T--v~p~~dy~---~a~~~Fl~~~a~~l~l~~---~~i~~~p----~-----------------~~~ 76 (420)
T KOG2275|consen 26 ISVTRFREYLRIPT--VQPNPDYT---IACADFLKKYAKSLGLTV---QKIESEP----G-----------------KYV 76 (420)
T ss_pred hHHHHHHHHhhccc--cccCCCcc---HHHHHHHHHHHHhcCCce---eEEEecC----c-----------------eeE
Confidence 35566666666554 22322222 178999999999998432 1122211 1 369
Q ss_pred EEEEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008900 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRP 189 (549)
Q Consensus 131 Vi~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 189 (549)
++.+++|++| ..+.||+++|.|+||+ +.|+.|+++-++++||++|.|..+|.+|+|+
T Consensus 77 ~l~T~~GS~P--~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rt 154 (420)
T KOG2275|consen 77 LLYTWLGSDP--ELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRT 154 (420)
T ss_pred EEEEeeCCCC--CccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCce
Confidence 9999999976 4578999999999986 5699999999999999999999999999999
Q ss_pred EEEEEeCcccCC-CcchHHHHhhcCccCcccEEEEeccCC
Q 008900 190 IIFLFNGAEELF-MLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 190 I~flf~~~EE~g-l~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
|.+.|..+||.| ..|.+.|+..... ++....+-+|-.|
T Consensus 155 i~lsfvpDEEi~G~~Gm~~fa~~~~~-~~l~~~filDEG~ 193 (420)
T KOG2275|consen 155 IHLSFVPDEEIGGHIGMKEFAKTEEF-KKLNLGFILDEGG 193 (420)
T ss_pred EEEEecCchhccCcchHHHHhhhhhh-cccceeEEecCCC
Confidence 999999999976 8899999982222 3334445555444
No 40
>PRK05469 peptidase T; Provisional
Probab=99.26 E-value=8e-11 Score=126.50 Aligned_cols=139 Identities=15% Similarity=0.238 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCCCCCC------C-hhHHHHHHHHHHHHHcccccCCCcee-EEEEeeeecCcccceecccccccccc
Q 008900 55 RAIQHVRVLADEIGDRQEG------R-PGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHSISLGYR 126 (549)
Q Consensus 55 ra~~~l~~La~~ig~R~~g------S-~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~~~~~~~ 126 (549)
.+.+.+++|. +|.+-... | ++++++++||+++|+++| ++ ++++.
T Consensus 3 ~~~~~l~~~~-~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G------~~~~~~~~--------------------- 54 (408)
T PRK05469 3 KLLERFLRYV-KIDTQSDENSTTVPSTEGQWDLAKLLVEELKELG------LQDVTLDE--------------------- 54 (408)
T ss_pred hHHHHHHhhE-EeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcC------CCeEEECC---------------------
Confidence 4667788887 45543211 1 455689999999999999 43 33331
Q ss_pred ccceEEEEEeCCCCCCCCCeEEEeeecCCCCCC----------------------------------------------C
Q 008900 127 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS----------------------------------------------P 160 (549)
Q Consensus 127 ~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~s----------------------------------------------p 160 (549)
..||+++++|+.+ ++.+.|++.+|+|+||.. .
T Consensus 55 -~~~v~~~~~g~~~-~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~r 132 (408)
T PRK05469 55 -NGYVMATLPANVD-KDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTD 132 (408)
T ss_pred -CeEEEEEecCCCC-CCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcC
Confidence 2489999988531 235889999999999642 2
Q ss_pred CC----CCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 161 GA----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 161 GA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
|+ .|+|+|+|+++.+++.|++.+..++.+|+|+|..+||.| .|++.++.+. + .....+.+|..
T Consensus 133 G~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~~-~--~~~~~~~~~~~ 199 (408)
T PRK05469 133 GTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDVEK-F--GADFAYTVDGG 199 (408)
T ss_pred CCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhhhh-c--CCcEEEEecCC
Confidence 55 999999999999999998876667789999999999998 8998886432 1 22445556643
No 41
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.26 E-value=1.1e-10 Score=126.17 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEe---eeecCcccceeccccccccccccce
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEE---NVVNGSFNMIFLGHSISLGYRNHTN 130 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~---~~~~g~~~~~~~~~~~~~~~~~~~N 130 (549)
+++.+.+++|. +|.+ .|.++.++++||.++|+++| ++++... ........ ..+....+.+..|
T Consensus 20 ~~~~~~l~~li-~ipS---~s~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~n 85 (427)
T PRK06837 20 DAQVAFTQDLV-RFPS---TRGAEAPCQDFLARAFRERG------YEVDRWSIDPDDLKSHPG----AGPVEIDYSGAPN 85 (427)
T ss_pred HHHHHHHHHHh-ccCC---CCCcHHHHHHHHHHHHHHCC------CceEEecCCHHHhhhccc----ccccccccCCCce
Confidence 45666677777 4554 34456689999999999999 4443321 10000000 0001112234689
Q ss_pred EEEEEeCCCCCCCCCeEEEeeecCCCCCC---------------------CCCCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008900 131 IVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWIPPRP 189 (549)
Q Consensus 131 Vi~~i~G~~~~~~~~~Vll~aH~Dsv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 189 (549)
|+++++|+++ ..+.|++.+|+|+||.+ +|+.|+++|++++|.+++.+++.+.+++++
T Consensus 86 l~a~~~g~~~--~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~ 163 (427)
T PRK06837 86 VVGTYRPAGK--TGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAAR 163 (427)
T ss_pred EEEEecCCCC--CCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999987532 24789999999999863 499999999999999999999888888999
Q ss_pred EEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 190 IIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 190 I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
|.|+|+.+||.+..|+...+.+. . +..++|..|..
T Consensus 164 i~~~~~~dEE~~g~g~~~~~~~~-~--~~d~~iv~ep~ 198 (427)
T PRK06837 164 VHFQSVIEEESTGNGALSTLQRG-Y--RADACLIPEPT 198 (427)
T ss_pred EEEEEEeccccCCHhHHHHHhcC-c--CCCEEEEcCCC
Confidence 99999999998888887665532 1 34555555543
No 42
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.25 E-value=1.1e-10 Score=124.15 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhH-HHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGL-REAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~-e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
..+.+.+++|. +|.+. |.++ .++.+||.++|+++| +++++..... ....|++
T Consensus 4 ~~~~~~l~~lv-~i~S~---s~~~~~~~~~~l~~~l~~~G------~~~~~~~~~~-----------------~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLV-AFDTV---SRDSNLALIEWVRDYLAAHG------VESELIPDPE-----------------GDKANLF 56 (385)
T ss_pred hhHHHHHHHHh-CCCCc---CCCccHHHHHHHHHHHHHcC------CeEEEEecCC-----------------CCcccEE
Confidence 34778888888 56653 2233 488999999999999 5555432211 1236999
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC--------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEE
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~f 192 (549)
++++++ +.+.|++.+|+|+||. ++|+.|++++++++|++++.|.+. +++++|.|
T Consensus 57 a~~~~~----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~ 130 (385)
T PRK07522 57 ATIGPA----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHL 130 (385)
T ss_pred EEeCCC----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEE
Confidence 998653 2367999999999973 469999999999999999999876 46789999
Q ss_pred EEeCcccCCCcchHHHHhhcCc-cCcccEEEEeccC
Q 008900 193 LFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVEAS 227 (549)
Q Consensus 193 lf~~~EE~gl~GS~~f~~~~~~-~~~v~a~INLD~~ 227 (549)
+|..+||.|..|++.++++.+. ..+...+|..|..
T Consensus 131 ~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep~ 166 (385)
T PRK07522 131 AFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEPT 166 (385)
T ss_pred EEEeccccCCccHHHHHHHhhhcCCCCCEEEEccCC
Confidence 9999999998999999875421 1234566666654
No 43
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.24 E-value=1.1e-10 Score=127.73 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------ChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccc
Q 008900 54 ARAIQHVRVLADEIGDRQEG---------RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~g---------S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (549)
+++.+.+++|. +|.+-..+ -++++++.+|+.+.++++| ++++..
T Consensus 14 ~~~~~~l~~lv-~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G------~~~~~~-------------------- 66 (466)
T PRK07318 14 DDLIEDLQELL-RINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDG------FKTKNV-------------------- 66 (466)
T ss_pred HHHHHHHHHHh-ccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCC------CEEEEe--------------------
Confidence 56677788888 56653322 1235589999999999998 443321
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeeecCCCCC-------------------CCCCCCCchHHHHHHHHHHHHHhcCCC
Q 008900 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWI 185 (549)
Q Consensus 125 ~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 185 (549)
.|+++++++.+ +.+.|++++|+|+||. ++|+.||++|+++++.+++.|++.+.+
T Consensus 67 ----~n~~~~~~~~~---~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~ 139 (466)
T PRK07318 67 ----DNYAGHIEYGE---GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLP 139 (466)
T ss_pred ----cCccceEEECC---CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCC
Confidence 25566654321 2357999999999984 469999999999999999999988888
Q ss_pred CCCCEEEEEeCcccCCCcchHHHHhhcC
Q 008900 186 PPRPIIFLFNGAEELFMLGAHGFMKAHK 213 (549)
Q Consensus 186 p~~~I~flf~~~EE~gl~GS~~f~~~~~ 213 (549)
++++|.|++..+||.|..|++.++++++
T Consensus 140 ~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 140 LSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCccEEEEEEcccccCchhHHHHHHhCC
Confidence 8889999999999999999999998764
No 44
>PRK06156 hypothetical protein; Provisional
Probab=99.24 E-value=2.6e-10 Score=126.57 Aligned_cols=137 Identities=19% Similarity=0.184 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCCCC-CC-----ChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccc
Q 008900 54 ARAIQHVRVLADEIGDRQ-EG-----RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRN 127 (549)
Q Consensus 54 era~~~l~~La~~ig~R~-~g-----S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~ 127 (549)
+++.+.+++|. +|.+-. .+ .++.....+||.+++++.| ++++. . +
T Consensus 46 ~~~~~~l~~lv-~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G------~~~~~----~-~----------------- 96 (520)
T PRK06156 46 AAAIESLRELV-AFPTVRVEGVPQHENPEFIGFKKLLKSLARDFG------LDYRN----V-D----------------- 96 (520)
T ss_pred HHHHHHHHHhc-CcCcccCCCCCccCCccHHHHHHHHHHHHHHCC------CeEEe----c-C-----------------
Confidence 56667777777 555421 11 1222356799999999998 43321 0 1
Q ss_pred cceEE-EEEeCCCCCCCCCeEEEeeecCCCCC-------------------------CCCCCCCchHHHHHHHHHHHHHh
Q 008900 128 HTNIV-MRISSTDSQDTDPSVLMNGHFDGPLS-------------------------SPGAGDCGSCVASMLELARLTID 181 (549)
Q Consensus 128 ~~NVi-~~i~G~~~~~~~~~Vll~aH~Dsv~~-------------------------spGA~Dd~sgva~~LE~ar~L~~ 181 (549)
.|++ ++++|++ .+.|++++|+|+||. ++|+.|++.|+++++++++.|.+
T Consensus 97 -~~v~~~~~~g~~----~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~ 171 (520)
T PRK06156 97 -NRVLEIGLGGSG----SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKD 171 (520)
T ss_pred -CeEEEEEecCCC----CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHH
Confidence 1444 6776642 357999999999974 34899999999999999999988
Q ss_pred cCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 182 SGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 182 ~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
.+.+++++|.|+|..+||.|..|++.++.++. ..+.++|+|.-
T Consensus 172 ~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~~ 214 (520)
T PRK06156 172 SGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDAE 214 (520)
T ss_pred cCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCCC
Confidence 88788899999999999999999999998653 34677888853
No 45
>PRK13381 peptidase T; Provisional
Probab=99.24 E-value=1.4e-10 Score=124.56 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCCC-------CCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccccccc
Q 008900 56 AIQHVRVLADEIGDRQ-------EGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (549)
Q Consensus 56 a~~~l~~La~~ig~R~-------~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~ 128 (549)
+.+.+.+|. .|.+.. .++++++++++||.++|+++|.+ .++++ + .
T Consensus 3 ~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~-----~~~~~-----~-----------------~ 54 (404)
T PRK13381 3 LTDRFFRYL-KVNSQSDAASGTLPSTPGQHELAKLLADELRELGLE-----DIVID-----E-----------------H 54 (404)
T ss_pred HHHHhHhhE-EEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCC-----cEEEc-----C-----------------C
Confidence 344555555 344432 23456678999999999999932 12221 2 2
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeeecCCCCCC----------------------------------------------CCC
Q 008900 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLSS----------------------------------------------PGA 162 (549)
Q Consensus 129 ~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~s----------------------------------------------pGA 162 (549)
.||+++++|+++ ..+.|++++|+|+||.. .|+
T Consensus 55 ~nvi~~~~g~~~--~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~ 132 (404)
T PRK13381 55 AIVTAKLPGNTP--GAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGT 132 (404)
T ss_pred eEEEEEEecCCC--CCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCc
Confidence 499999987642 23789999999999753 267
Q ss_pred ----CCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 163 ----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 163 ----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
.|+++|+|++|.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+. + +....+.+|..
T Consensus 133 ~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~~-~--~~d~~~~~~~~ 197 (404)
T PRK13381 133 SVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLAR-F--PVDFAYTIDCC 197 (404)
T ss_pred cccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHhc-C--CCCEEEEecCC
Confidence 999999999999999998764 4577999999999999999999987642 2 24455556643
No 46
>PRK07205 hypothetical protein; Provisional
Probab=99.23 E-value=1.5e-10 Score=125.90 Aligned_cols=129 Identities=13% Similarity=0.169 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCC-------hhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccc
Q 008900 52 SEARAIQHVRVLADEIGDRQEGR-------PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (549)
Q Consensus 52 s~era~~~l~~La~~ig~R~~gS-------~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (549)
..+++.+.+++|. +|.+-.... ++..++.+|+.+.++++| ++++++. .|
T Consensus 9 ~~~~~~~~l~~lv-~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~~~~---~~-------------- 64 (444)
T PRK07205 9 VQDACVAAIKTLV-SYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLG------FKTYLDP---KG-------------- 64 (444)
T ss_pred hHHHHHHHHHHHc-ccccccCCCcCCCCCchhHHHHHHHHHHHHHhCC------CEEEEcC---CC--------------
Confidence 4567778888887 555422111 223578899999999998 5544431 11
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcC
Q 008900 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSG 183 (549)
Q Consensus 125 ~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~ 183 (549)
.|+++++ |+ +.+.|++++|+|+||. ++|+.|+|+|++++|++++.|.+.+
T Consensus 65 ----~~~~~~~-g~----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~ 135 (444)
T PRK07205 65 ----YYGYAEI-GQ----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAG 135 (444)
T ss_pred ----eEEEEEe-cC----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC
Confidence 2555655 43 2367999999999985 4699999999999999999999988
Q ss_pred CCCCCCEEEEEeCcccCCCcchHHHHhhcC
Q 008900 184 WIPPRPIIFLFNGAEELFMLGAHGFMKAHK 213 (549)
Q Consensus 184 ~~p~~~I~flf~~~EE~gl~GS~~f~~~~~ 213 (549)
.+++++|.|+|.++||.|..|++.|++..+
T Consensus 136 ~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 136 VQFNKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred CCCCCcEEEEEECCcccCcccHHHHHhCCC
Confidence 888999999999999999999999987543
No 47
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.22 E-value=1.5e-10 Score=121.85 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeCC
Q 008900 59 HVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISST 138 (549)
Q Consensus 59 ~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~ 138 (549)
.+++|. +|.+-. + .++.++++||.++|+++| +++++++... + ....|+++++.|+
T Consensus 2 ~l~~lv-~i~S~s-~-~~~~~~~~~l~~~l~~~G------~~~~~~~~~~-~---------------~~~~nl~~~~~~~ 56 (364)
T TIGR01892 2 ILTKLV-AFDSTS-F-RPNVDLIDWAQAYLEALG------FSVEVQPFPD-G---------------AEKSNLVAVIGPS 56 (364)
T ss_pred hHHHhh-CcCCcC-C-ccHHHHHHHHHHHHHHcC------CeEEEEeCCC-C---------------CccccEEEEecCC
Confidence 456776 555432 2 123588999999999999 5555543211 1 1236999998653
Q ss_pred CCCCCCCeEEEeeecCCCCC--------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcc
Q 008900 139 DSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAE 198 (549)
Q Consensus 139 ~~~~~~~~Vll~aH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~E 198 (549)
+ .+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. +.+++|.|+|..+|
T Consensus 57 ~----~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~E 130 (364)
T TIGR01892 57 G----AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADE 130 (364)
T ss_pred C----CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEecc
Confidence 2 357999999999974 459999999999999999999875 35779999999999
Q ss_pred cCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 199 ELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 199 E~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
|.|..|++.++++... +...++.-|..+
T Consensus 131 E~g~~G~~~~~~~~~~--~~d~~i~~ep~~ 158 (364)
T TIGR01892 131 EVGCTGAPKMIEAGAG--RPRHAIIGEPTR 158 (364)
T ss_pred ccCCcCHHHHHHhcCC--CCCEEEECCCCC
Confidence 9999999999986542 334566656543
No 48
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.22 E-value=2.9e-10 Score=124.93 Aligned_cols=138 Identities=23% Similarity=0.292 Sum_probs=105.7
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccce
Q 008900 51 FSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (549)
Q Consensus 51 fs~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~N 130 (549)
...+++.+.+++|+ +|.. +|.++++.++|+.++++++| ++++.+. ..|
T Consensus 7 ~~~~~~~~~l~~Lv-~ips---~S~~e~~~~~~l~~~~~~~G------~~~~~d~----------------------~gn 54 (485)
T PRK15026 7 LSPQPLWDIFAKIC-SIPH---PSYHEEQLAEYIVGWAKEKG------FHVERDQ----------------------VGN 54 (485)
T ss_pred cCHHHHHHHHHHHh-CCCC---CCCCHHHHHHHHHHHHHhCC------CEEEEEe----------------------cCe
Confidence 34677899999999 5553 45556699999999999999 5555542 149
Q ss_pred EEEEEeCCCCCCCCCeEEEeeecCCCCC------------------------CCCC---CCCchHHHHHHHHHHHHHhcC
Q 008900 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS------------------------SPGA---GDCGSCVASMLELARLTIDSG 183 (549)
Q Consensus 131 Vi~~i~G~~~~~~~~~Vll~aH~Dsv~~------------------------spGA---~Dd~sgva~~LE~ar~L~~~~ 183 (549)
++++.+++.+.+..+.|++.+|+|+|+. ++|+ .|+++|+|++|+++ .+.+
T Consensus 55 vi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~ 131 (485)
T PRK15026 55 ILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADEN 131 (485)
T ss_pred EEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCC
Confidence 9999875422234578999999999974 2477 59999999998876 3333
Q ss_pred CCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC
Q 008900 184 WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 184 ~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
. ++.+|.++|+.+||.|+.|++.+.. .+ .+.+++||+|..
T Consensus 132 ~-~~~~i~~l~t~dEE~G~~ga~~l~~--~~-~~~~~~i~~e~~ 171 (485)
T PRK15026 132 V-VHGPLEVLLTMTEEAGMDGAFGLQS--NW-LQADILINTDSE 171 (485)
T ss_pred C-CCCCEEEEEEcccccCcHhHHHhhh--cc-CCcCEEEEeCCC
Confidence 3 4679999999999999999999854 22 467999999986
No 49
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.22 E-value=1.8e-10 Score=120.97 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEE
Q 008900 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
.+++.+.+++|. +|.+ .|.+++++++||.++|+++| ++++++. ..|++
T Consensus 9 ~~~~~~~l~~lv-~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~~----------------------~~~~~ 56 (346)
T PRK00466 9 KQKAKELLLDLL-SIYT---PSGNETNATKFFEKISNELN------LKLEILP----------------------DSNSF 56 (346)
T ss_pred HHHHHHHHHHHh-cCCC---CCCCHHHHHHHHHHHHHHcC------CeEEEec----------------------CCCcE
Confidence 367888899998 6665 34455689999999999999 5554432 12444
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~ 200 (549)
. .|. +.|++++|+|+||. ++|+.|+++|+|+++++++.+.+.+ .++.|+++.+||.
T Consensus 57 ~--~g~------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~ 124 (346)
T PRK00466 57 I--LGE------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEES 124 (346)
T ss_pred e--cCC------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCccc
Confidence 2 332 34999999999985 4899999999999999999998764 3589999999999
Q ss_pred CCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 201 FMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 201 gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
|..|++.+++++ + +..++|..|..+
T Consensus 125 g~~G~~~l~~~~-~--~~d~~i~~ep~~ 149 (346)
T PRK00466 125 TSIGAKELVSKG-F--NFKHIIVGEPSN 149 (346)
T ss_pred CCccHHHHHhcC-C--CCCEEEEcCCCC
Confidence 999999998864 2 356777777654
No 50
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.22 E-value=2.4e-10 Score=121.89 Aligned_cols=149 Identities=23% Similarity=0.234 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEE
Q 008900 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
.+++.+.+++|. +|.+-.....+++++++||.++|+++| ++++++... .+... .......|++
T Consensus 5 ~~~~~~~l~~lv-~i~S~s~~~~~~~~~a~~l~~~l~~~G------~~~~~~~~~-~~~~~---------~~~~~~~~~~ 67 (394)
T PRK08651 5 MFDIVEFLKDLI-KIPTVNPPGENYEEIAEFLRDTLEELG------FSTEIIEVP-NEYVK---------KHDGPRPNLI 67 (394)
T ss_pred HHHHHHHHHHHh-cCCccCCCCcCHHHHHHHHHHHHHHcC------CeEEEEecC-ccccc---------cccCCcceEE
Confidence 467888899998 666532112345589999999999999 555554321 11000 0001135888
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC--------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEE
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~f 192 (549)
++. |. .++.|++.+|+|+||. ++|+.|++.|++++|++++.+.+.+ +++|.|
T Consensus 68 ~~~-~~----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~ 139 (394)
T PRK08651 68 ARR-GS----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIEL 139 (394)
T ss_pred EEe-CC----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEE
Confidence 865 32 1368999999999975 3588999999999999999998764 789999
Q ss_pred EEeCcccCCCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 193 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 193 lf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
+|..+||.|..|++.++++... +...++..|..+
T Consensus 140 ~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 140 AIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred EEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 9999999988999999986543 246677777654
No 51
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.21 E-value=2.6e-10 Score=121.19 Aligned_cols=141 Identities=23% Similarity=0.252 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccc
Q 008900 54 ARAIQHVRVLADEIGDRQEGR----PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS----~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~ 129 (549)
+++.+.+++|. +|.+..... .+++++++||.+.|+++| ++++++.. .+ ..+..
T Consensus 5 ~~~i~~l~~lv-~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~~--~~--------------~~~~~ 61 (383)
T PRK05111 5 PSFIEMYRALI-ATPSISATDPALDQSNRAVIDLLAGWFEDLG------FNVEIQPV--PG--------------TRGKF 61 (383)
T ss_pred hHHHHHHHHHh-CcCCcCCCCcccccchHHHHHHHHHHHHHCC------CeEEEEec--CC--------------CCCCc
Confidence 46788888888 566532111 123579999999999998 55554431 11 01235
Q ss_pred eEEEEEeCCCCCCCCCeEEEeeecCCCCC--------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008900 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRP 189 (549)
Q Consensus 130 NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 189 (549)
|+++++ |.+ .+.|++.+|+|+||. ++|+.|++++++++|++++.|.+. .++++
T Consensus 62 nvia~~-g~~----~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~ 134 (383)
T PRK05111 62 NLLASL-GSG----EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKKP 134 (383)
T ss_pred eEEEEe-CCC----CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCCC
Confidence 999998 432 235999999999973 569999999999999999999864 35678
Q ss_pred EEEEEeCcccCCCcchHHHHhhcCccCcccEEEEecc
Q 008900 190 IIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 226 (549)
Q Consensus 190 I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~ 226 (549)
|+|+|.++||.|..|++.++++... +...+|.-|.
T Consensus 135 i~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~ep 169 (383)
T PRK05111 135 LYILATADEETSMAGARAFAEATAI--RPDCAIIGEP 169 (383)
T ss_pred eEEEEEeccccCcccHHHHHhcCCC--CCCEEEEcCC
Confidence 9999999999999999999985432 2345565553
No 52
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.21 E-value=1.9e-10 Score=120.34 Aligned_cols=131 Identities=23% Similarity=0.242 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~ 133 (549)
|++.+.+++|. +|.+ .|.++.++++||.++|+++| ++++.+.. + +..|+++
T Consensus 2 ~~~~~~~~~lv-~ips---~s~~e~~~~~~l~~~l~~~G------~~v~~~~~---~----------------~~~~~~~ 52 (347)
T PRK08652 2 ERAKELLKQLV-KIPS---PSGQEDEIALHIMEFLESLG------YDVHIESD---G----------------EVINIVV 52 (347)
T ss_pred hhHHHHHHHHh-cCCC---CCCchHHHHHHHHHHHHHcC------CEEEEEec---C----------------ceeEEEc
Confidence 57788899998 5554 33455689999999999999 55554321 1 1247765
Q ss_pred EEeCCCCCCCCCeEEEeeecCCCCC------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC
Q 008900 134 RISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF 201 (549)
Q Consensus 134 ~i~G~~~~~~~~~Vll~aH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~g 201 (549)
+. .+.|++.+|+|++|. ++|+.|+++|++++|++++.|.+. .++++|.|+|..+||.|
T Consensus 53 ---~~-----~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g 122 (347)
T PRK08652 53 ---NS-----KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEG 122 (347)
T ss_pred ---CC-----CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccC
Confidence 32 357999999999985 479999999999999999999854 34679999999999999
Q ss_pred CcchHHHHhhcCccCcccEEEEeccC
Q 008900 202 MLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 202 l~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
..|++.++++++ ...+|..|..
T Consensus 123 ~~G~~~~~~~~~----~d~~i~~ep~ 144 (347)
T PRK08652 123 GRGSALFAERYR----PKMAIVLEPT 144 (347)
T ss_pred ChhHHHHHHhcC----CCEEEEecCC
Confidence 899999988643 2577888864
No 53
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.21 E-value=2.4e-10 Score=121.04 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEE
Q 008900 55 RAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMR 134 (549)
Q Consensus 55 ra~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~ 134 (549)
++.+.+++|. ++.. .|+.++++++||.+.|+++| ++++.... . ...|++++
T Consensus 3 ~~~~~l~~Lv-~ips---~s~~e~~~~~~l~~~l~~~G------~~~~~~~~--~-----------------~~~n~~~~ 53 (375)
T PRK13009 3 DVLELAQDLI-RRPS---VTPDDAGCQDLLAERLEALG------FTCERMDF--G-----------------DVKNLWAR 53 (375)
T ss_pred hHHHHHHHHh-CCCC---CCCchhhHHHHHHHHHHHcC------CeEEEecc--C-----------------CCcEEEEE
Confidence 3556677777 3333 44556789999999999998 54433211 1 13599998
Q ss_pred EeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 008900 135 ISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (549)
Q Consensus 135 i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~fl 193 (549)
+ |. +.+.|++++|+|+||. ++|+.|+++|+++++++++.+.+.+.+++++|+|+
T Consensus 54 ~-g~----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~ 128 (375)
T PRK13009 54 R-GT----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFL 128 (375)
T ss_pred e-cC----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 7 43 2467999999999985 34899999999999999999988777788999999
Q ss_pred EeCcccCCC-cchHHHHhhcC-ccCcccEEEEeccC
Q 008900 194 FNGAEELFM-LGAHGFMKAHK-WRDSVGAVINVEAS 227 (549)
Q Consensus 194 f~~~EE~gl-~GS~~f~~~~~-~~~~v~a~INLD~~ 227 (549)
+..+||.+. .|++.+++... ......++|..|..
T Consensus 129 ~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep~ 164 (375)
T PRK13009 129 ITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGEPT 164 (375)
T ss_pred EEeecccccccCHHHHHHHHHHcCcCCCEEEEcCCC
Confidence 999999754 69998876421 11235666666643
No 54
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.20 E-value=2.4e-10 Score=123.04 Aligned_cols=140 Identities=18% Similarity=0.265 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCCCCC-------CChhHHHHHHHHHHHHHcccccCCCcee-EEEEeeeecCcccceeccccccccc
Q 008900 54 ARAIQHVRVLADEIGDRQE-------GRPGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHSISLGY 125 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~-------gS~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~~~~~~ 125 (549)
+|+.+.+-+++ .|.+..- .++++++.++||.++|+++| ++ +++|.
T Consensus 3 ~~~~~~f~~~~-~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG------~~~v~~d~-------------------- 55 (410)
T TIGR01882 3 EELLPRFLTYV-KVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLG------LQDAHYDE-------------------- 55 (410)
T ss_pred hHHHHHHHhhE-EEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcC------CceEEEcC--------------------
Confidence 56667777776 4554321 23455689999999999999 43 55552
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeeecCCCCC----------------------------------------------C
Q 008900 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS----------------------------------------------S 159 (549)
Q Consensus 126 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~----------------------------------------------s 159 (549)
+..||+++++|+.+ ...+.|++.||+|||+. +
T Consensus 56 -~~gnv~~~~~~~~~-~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 133 (410)
T TIGR01882 56 -KNGYVIATIPSNTD-KDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITT 133 (410)
T ss_pred -CceEEEEEecCCCC-CCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEc
Confidence 12599999988642 11378999999999973 1
Q ss_pred CC----CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEecc
Q 008900 160 PG----AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 226 (549)
Q Consensus 160 pG----A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~ 226 (549)
.| +.||++|+|+||++++.|++.+..++.+|.|+|..+||.| .|++.+..+. + +....+.+|+
T Consensus 134 ~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~~~-~--~~~~~~~i~g 200 (410)
T TIGR01882 134 DGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDVKD-F--NADFAYTVDG 200 (410)
T ss_pred CCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhhhh-c--CccEEEEeCC
Confidence 12 3799999999999999998764446789999999999987 5998876532 2 2344444553
No 55
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.19 E-value=3.8e-10 Score=118.41 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcc-cccCCCceeEEEEeeeecCcccceeccccccccccccceE
Q 008900 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGI-KERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~i-g~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NV 131 (549)
++++.+.+++|. ++.+ .|.+++++++||.++++++ + ++++ .. ..|+
T Consensus 6 ~~~~~~~l~~li-~ips---~s~~e~~~~~~l~~~l~~~~~------~~~~--~~---------------------~~~~ 52 (352)
T PRK13007 6 AADLAELTAALV-DIPS---VSGDEKALADAVEAALRALPH------LEVI--RH---------------------GNSV 52 (352)
T ss_pred HHHHHHHHHHHh-cCCC---CCchHHHHHHHHHHHHHhCcC------ceEE--ec---------------------CCeE
Confidence 356788888888 4443 3445568999999999996 5 3322 10 1489
Q ss_pred EEEEeCCCCCCCCCeEEEeeecCCCCC--------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCc
Q 008900 132 VMRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGA 197 (549)
Q Consensus 132 i~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~ 197 (549)
++++.+.. .+.|++++|+|+||. ++|+.|+++|+|++|.+++.|. +++++|.|+|.++
T Consensus 53 ~~~~~~~~----~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~ 124 (352)
T PRK13007 53 VARTDLGR----PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDC 124 (352)
T ss_pred EEEccCCC----CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEec
Confidence 99984321 236999999999985 4799999999999999999994 3678999999999
Q ss_pred ccCCC--cchHHHHhhcCccCcccEEEEeccC
Q 008900 198 EELFM--LGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 198 EE~gl--~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
||.|. .|+..++.+++...+..++|+.|..
T Consensus 125 EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~ 156 (352)
T PRK13007 125 EEVEAEANGLGRLAREHPEWLAGDFAILLEPT 156 (352)
T ss_pred ccccCCcccHHHHHHhcccccCCCEEEEecCC
Confidence 99864 5888888766533457888988864
No 56
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.18 E-value=6e-09 Score=108.73 Aligned_cols=195 Identities=21% Similarity=0.216 Sum_probs=131.2
Q ss_pred cccceEEEEEe-CCC---CCCCCCeEEEeeecCCCCC----CCCCCCCchHHHHHHHHHHHHHhc----CCCCCCCEEEE
Q 008900 126 RNHTNIVMRIS-STD---SQDTDPSVLMNGHFDGPLS----SPGAGDCGSCVASMLELARLTIDS----GWIPPRPIIFL 193 (549)
Q Consensus 126 ~~~~NVi~~i~-G~~---~~~~~~~Vll~aH~Dsv~~----spGA~Dd~sgva~~LE~ar~L~~~----~~~p~~~I~fl 193 (549)
..+.||.++++ |-. ..+.-|.|++.||||+... ++||+-||||++++||++|.+++. ..+++.++.|+
T Consensus 191 ~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~ 270 (555)
T KOG2526|consen 191 YKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFI 270 (555)
T ss_pred CccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEE
Confidence 45789999998 422 1235689999999999765 579999999999999999999763 34678899999
Q ss_pred EeCcccCCCcchHHHHhhc--CccCcccEEEEeccCCCCCCceEEe-cC-CC-Cch-hhHhhh---hccccccccccccc
Q 008900 194 FNGAEELFMLGAHGFMKAH--KWRDSVGAVINVEASGTGGLDLVCQ-SG-PS-SWP-SSVYAQ---SAIYPMAHSAAQDV 264 (549)
Q Consensus 194 f~~~EE~gl~GS~~f~~~~--~~~~~v~a~INLD~~G~gg~~~lfq-~~-p~-~~~-~~~y~~---~~~~p~~~~~~~~~ 264 (549)
..+|--...+|++.|++-. ..++++..+|+||++|.+...+... +. |. .-. .+.++. .+.+-.......
T Consensus 271 lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~~k-- 348 (555)
T KOG2526|consen 271 LTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTK-- 348 (555)
T ss_pred EccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEEEE--
Confidence 9999999999999999843 3568999999999999885555443 32 31 112 222321 111111000000
Q ss_pred cCCCCC-----CCchHHHhhcCCCCcEEEEEEecCC--CcCCCcc-CCcCCCCHHHHHHHHHHHHHHH
Q 008900 265 FPVIPG-----DTDYRIFSQDYGDIPGLDIIFLIGG--YYYHTSH-DTVDRLLPGSVQARGDNLFNVL 324 (549)
Q Consensus 265 f~~ips-----~sD~~~F~~~~~giPgld~a~~~~~--y~YHT~~-Dt~d~id~~~lq~~g~~~l~l~ 324 (549)
-..+.- .=.|..|.. ..+|+..+...... ..-.+.. |+...+|.+++-...+.+.+.+
T Consensus 349 hkkInla~s~lAWEHErFsi--kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAl 414 (555)
T KOG2526|consen 349 HKKINLASSRLAWEHERFSI--KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEAL 414 (555)
T ss_pred eeeEeeccchhhhhhhhhhh--hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHH
Confidence 011221 224677764 67999988765432 2445555 8888899888776655555544
No 57
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.17 E-value=4.7e-10 Score=114.71 Aligned_cols=156 Identities=24% Similarity=0.215 Sum_probs=110.9
Q ss_pred ccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCC----
Q 008900 127 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFM---- 202 (549)
Q Consensus 127 ~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl---- 202 (549)
-.+|+|+.=.++ ++.++++||.|+|. .|+.||-.|++...++++.|... ...+-++.+++||.|+
T Consensus 177 y~y~~Ia~~~~e-----n~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~----~~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 177 YDYNVIAVDGGE-----NGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGR----GLAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEEecCCC-----CCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhc----CcceeEEEEeccccCCCCCc
Confidence 356777655443 46899999999999 89999999999999999999754 3456788899999877
Q ss_pred -----cchHHHHhhcCccCcccEEEEeccCCCCCCceEEecCCCCchhhHhhhhccccccccccccccCCCCCCCchHHH
Q 008900 203 -----LGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIF 277 (549)
Q Consensus 203 -----~GS~~f~~~~~~~~~v~a~INLD~~G~gg~~~lfq~~p~~~~~~~y~~~~~~p~~~~~~~~~f~~ips~sD~~~F 277 (549)
.||+.|.++.+-.+.+.+++|+|.+|.+. ++..+-| .+.+.-.+..+.. .-.++. .+|-..+
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~--lv~~~~P--~L~e~~~~~g~~~---vespe~------y~Ds~~y 312 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRC--LVASGAP--QLVEHALEAGAVE---VESPEP------YCDSIMY 312 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccc--hhhhcCh--HHHHHHHHhCCce---ecCCCc------ccchhhh
Confidence 58999999888788999999999998653 2333333 3333222111100 011111 3565566
Q ss_pred hhcCCCCcEEEEEEecC---CCcCCCccCCcCCC
Q 008900 278 SQDYGDIPGLDIIFLIG---GYYYHTSHDTVDRL 308 (549)
Q Consensus 278 ~~~~~giPgld~a~~~~---~y~YHT~~Dt~d~i 308 (549)
.. .|||++.+....+ +..|||+.||+...
T Consensus 313 ~~--aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~ 344 (486)
T COG4882 313 AW--AGIPSLTIHSLWCPGVQEAYHTPRDTPASW 344 (486)
T ss_pred hh--cCCCeeEeeeccCCCccceecCCCCCchhH
Confidence 54 7999999886654 34999999999533
No 58
>PRK08554 peptidase; Reviewed
Probab=99.16 E-value=5.6e-10 Score=121.37 Aligned_cols=140 Identities=21% Similarity=0.229 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCCCCC---ChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEE
Q 008900 56 AIQHVRVLADEIGDRQEG---RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 56 a~~~l~~La~~ig~R~~g---S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
+.+.+++|. +|.+...+ ..+..++++|+.+.++++| ++++..+. .+ ..|++
T Consensus 3 ~~~~l~~LV-~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G------~~~~~~~~--~~-----------------~~~l~ 56 (438)
T PRK08554 3 VLELLSSLV-SFETVNDPSKGIKPSKECPKFIKDTLESWG------IESELIEK--DG-----------------YYAVY 56 (438)
T ss_pred HHHHHHHHh-CCCCCCCcccCcchHHHHHHHHHHHHHHCC------CeEEEEec--CC-----------------ceEEE
Confidence 567788887 56553222 2235689999999999998 55443221 11 25888
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC--------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEE
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~f 192 (549)
+++ |. +++.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. .++++|.|
T Consensus 57 ~~~-~~----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~i~l 129 (438)
T PRK08554 57 GEI-GE----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGKVIF 129 (438)
T ss_pred EEe-CC----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCCEEE
Confidence 887 32 2357999999999985 469999999999999999999874 36788999
Q ss_pred EEeCcccCCCcchHHHHhhcC-ccCcccEEEEeccCC
Q 008900 193 LFNGAEELFMLGAHGFMKAHK-WRDSVGAVINVEASG 228 (549)
Q Consensus 193 lf~~~EE~gl~GS~~f~~~~~-~~~~v~a~INLD~~G 228 (549)
+++++||.|..++..++++.. ......++|+.|..+
T Consensus 130 ~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 130 AFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred EEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 999999999887776665432 224568899999864
No 59
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.16 E-value=5.2e-10 Score=120.16 Aligned_cols=144 Identities=23% Similarity=0.260 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEE
Q 008900 55 RAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMR 134 (549)
Q Consensus 55 ra~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~ 134 (549)
++.+.+++|. ++.+.. ..++.++++|+.++++++| +.++.+....+. ...|++++
T Consensus 14 ~~~~~l~~lv-~~~s~s--~~~~~~~~~~l~~~l~~~g------~~~~~~~~~~~~----------------~~~n~~~~ 68 (409)
T COG0624 14 DILELLKELV-RIPSVS--AGEEAEAAELLAEWLEELG------FEVEEDEVGPGP----------------GRPNLVAR 68 (409)
T ss_pred HHHHHHHHHh-cCCCCC--cccchHHHHHHHHHHHHcC------CceEEeecCCCC----------------CceEEEEE
Confidence 3445666666 444332 3667799999999999998 454444322210 24599999
Q ss_pred EeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 008900 135 ISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (549)
Q Consensus 135 i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~fl 193 (549)
+.+..+ ++.|++++|+|+||. ++|+.|++.++++++.+++.+.+.+..++.+|.++
T Consensus 69 ~~~~~~---~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~ 145 (409)
T COG0624 69 LGGGDG---GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLL 145 (409)
T ss_pred ecCCCC---CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 988642 378999999999997 35999999999999999999999877888999999
Q ss_pred EeCcccCCCcchHHHHhhcC--ccCcccEEEEecc
Q 008900 194 FNGAEELFMLGAHGFMKAHK--WRDSVGAVINVEA 226 (549)
Q Consensus 194 f~~~EE~gl~GS~~f~~~~~--~~~~v~a~INLD~ 226 (549)
+.++||.|..|...+..++. ...+..+.|..|.
T Consensus 146 ~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 146 FTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 99999999999999998664 2456788888887
No 60
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.15 E-value=4.5e-10 Score=123.00 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCCCC---------CChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceecccccccc
Q 008900 54 ARAIQHVRVLADEIGDRQE---------GRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~---------gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (549)
+.+.+.+++|. +|.+-.. ..++.+++++|+.+.++++| ++++..+
T Consensus 13 ~~~~~~l~~lv-~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G------~~~~~~~------------------- 66 (466)
T TIGR01886 13 DALLEDLEELL-RIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDG------FTTKNFD------------------- 66 (466)
T ss_pred HHHHHHHHHHh-CCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCC------CeEEEec-------------------
Confidence 35566777776 4554211 12345579999999999999 5443321
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeeecCCCCC-------------------CCCCCCCchHHHHHHHHHHHHHhcCCC
Q 008900 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWI 185 (549)
Q Consensus 125 ~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 185 (549)
|+++++.+.+ +++.|++.+|+|+||. ++|+.||++|+++++.+++.|++.+.+
T Consensus 67 -----~~~~~~~~~~---~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~ 138 (466)
T TIGR01886 67 -----NYAGHVEYGA---GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLP 138 (466)
T ss_pred -----CCceeEEecC---CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCC
Confidence 2223332221 3468999999999975 569999999999999999999998888
Q ss_pred CCCCEEEEEeCcccCCCcchHHHHhhcC
Q 008900 186 PPRPIIFLFNGAEELFMLGAHGFMKAHK 213 (549)
Q Consensus 186 p~~~I~flf~~~EE~gl~GS~~f~~~~~ 213 (549)
++++|+|++.++||.|..|++.++++++
T Consensus 139 ~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 139 PSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCEEEEEECccccCcccHHHHHhcCc
Confidence 8999999999999999999999998654
No 61
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.13 E-value=9.6e-10 Score=116.37 Aligned_cols=136 Identities=20% Similarity=0.169 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeC
Q 008900 58 QHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISS 137 (549)
Q Consensus 58 ~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G 137 (549)
+.+++|. +|.+ .|.++.++++||.++|+++| ++++.... ++ ..|++++. |
T Consensus 3 ~~l~~lv-~ips---~s~~e~~~~~~i~~~l~~~G------~~~~~~~~--~~-----------------~~~~~~~~-g 52 (370)
T TIGR01246 3 ELAKELI-SRPS---VTPNDAGCQDIIAERLEKLG------FEIEWMHF--GD-----------------TKNLWATR-G 52 (370)
T ss_pred HHHHHHh-cCCC---CCcchHHHHHHHHHHHHHCC------CEEEEEec--CC-----------------CceEEEEe-c
Confidence 4566666 3433 44556689999999999999 55444321 11 24899985 3
Q ss_pred CCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Q 008900 138 TDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNG 196 (549)
Q Consensus 138 ~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~ 196 (549)
. +.+.|++.+|+|+||. ++|+.|++.|+++++++++.+.+.+.+++++|+|+|..
T Consensus 53 ~----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~ 128 (370)
T TIGR01246 53 T----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITS 128 (370)
T ss_pred C----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEe
Confidence 2 2467999999999985 34888999999999999999988776778899999999
Q ss_pred cccCCC-cchHHHHhhcC-ccCcccEEEEeccC
Q 008900 197 AEELFM-LGAHGFMKAHK-WRDSVGAVINVEAS 227 (549)
Q Consensus 197 ~EE~gl-~GS~~f~~~~~-~~~~v~a~INLD~~ 227 (549)
+||.+. .|++.+++... ......+++..|..
T Consensus 129 dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep~ 161 (370)
T TIGR01246 129 DEEGTAIDGTKKVVETLMARDELIDYCIVGEPS 161 (370)
T ss_pred ccccCCCcCHHHHHHHHHhcCCCCCEEEEcCCC
Confidence 999865 69998876321 11245666766643
No 62
>PRK13004 peptidase; Reviewed
Probab=99.11 E-value=1.5e-09 Score=116.28 Aligned_cols=135 Identities=21% Similarity=0.159 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeE-EEEeeeecCcccceeccccccccccccceEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRI-EIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~v-ev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
+++.+.+++|. ++.. .|.+++++++||.++|+++| +++ +++ + ..|++
T Consensus 15 ~~~~~~l~~lv-~ips---~s~~e~~~a~~l~~~l~~~G------~~~~~~~-----~-----------------~~n~~ 62 (399)
T PRK13004 15 ADMTRFLRDLI-RIPS---ESGDEKRVVKRIKEEMEKVG------FDKVEID-----P-----------------MGNVL 62 (399)
T ss_pred HHHHHHHHHHh-cCCC---CCCchHHHHHHHHHHHHHcC------CcEEEEc-----C-----------------CCeEE
Confidence 46777777777 4443 34455689999999999998 432 111 1 14899
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEE
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 191 (549)
+++.|. ++.|++.+|+|+||. ++|+.||++|++++|.+++.|.+.+.+++++|.
T Consensus 63 a~~~~~-----~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~ 137 (399)
T PRK13004 63 GYIGHG-----KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLY 137 (399)
T ss_pred EEECCC-----CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEE
Confidence 988653 267999999999985 348999999999999999999988877889999
Q ss_pred EEEeCcccC-CCcchHHHHhhcCccCcccEEEEeccC
Q 008900 192 FLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEAS 227 (549)
Q Consensus 192 flf~~~EE~-gl~GS~~f~~~~~~~~~v~a~INLD~~ 227 (549)
|+|..+||. +..|++.++++... +...++..|..
T Consensus 138 ~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~~ 172 (399)
T PRK13004 138 VTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEPT 172 (399)
T ss_pred EEEEcccccCcchhHHHHHHhcCC--CCCEEEEccCC
Confidence 999999995 45677777764322 34566666654
No 63
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.10 E-value=4.1e-10 Score=107.05 Aligned_cols=166 Identities=22% Similarity=0.177 Sum_probs=110.0
Q ss_pred EEeeecCCCCC-------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCc-chHH
Q 008900 148 LMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML-GAHG 207 (549)
Q Consensus 148 ll~aH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~-GS~~ 207 (549)
++.+|+|+||. ++|+.|++.|+++++.+++.+++.+.+++++|+|+++.+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999992 679999999999999999999988889999999999999999998 9999
Q ss_pred HHhhc-CccCcccEEEEeccCCCCCCceEEecCCCCchhhHhhhhccccccccccccccCCCCCCCchHHHhhc-CCCCc
Q 008900 208 FMKAH-KWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQD-YGDIP 285 (549)
Q Consensus 208 f~~~~-~~~~~v~a~INLD~~G~gg~~~lfq~~p~~~~~~~y~~~~~~p~~~~~~~~~f~~ips~sD~~~F~~~-~~giP 285 (549)
++++. ....+....+..|....+... ...++.+.+...+.......... .....+..||...|.+. ..++|
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~tD~~~~~~~~~~~~~ 153 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEPP---EPVASGGGTDAGFLAEVKGLGIP 153 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSEE---EEEEESSSSTHHHHHCHHHTTEE
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhccc---cccceeccccchhhhhhhccccc
Confidence 99863 222346677777755433211 21222222222221111111000 01234668999999730 25777
Q ss_pred EEEEEEecCCCcCCCccCCcCCCCHHHHHHHHHHHHHHHH
Q 008900 286 GLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLK 325 (549)
Q Consensus 286 gld~a~~~~~y~YHT~~Dt~d~id~~~lq~~g~~~l~l~~ 325 (549)
.+.+.... ...|++... ++.+.+....+.+.++++
T Consensus 154 ~i~~G~~~--~~~H~~~E~---i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 154 AIGFGPGG--SNAHTPDEY---IDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEESCE--ESTTSTT-E---EEHHHHHHHHHHHHHHHH
T ss_pred eeeeCCCC--CCCCCCCcE---ecHHHHHHHHHHHHHHHh
Confidence 77654333 478998764 457778877777777764
No 64
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.07 E-value=1.4e-09 Score=113.79 Aligned_cols=125 Identities=21% Similarity=0.185 Sum_probs=94.4
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeCC
Q 008900 59 HVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISST 138 (549)
Q Consensus 59 ~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~ 138 (549)
.+++|. +|.+ .|.+++++++||.++|+++| ++++.+ ...|+++.. |.
T Consensus 2 ~l~~lv-~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~----------------------~~~~~~~~~-~~ 48 (336)
T TIGR01902 2 LLKDLL-EIYS---PSGKEANAAKFLEEISKDLG------LKLIID----------------------DAGNFILGK-GD 48 (336)
T ss_pred hHHHHh-cCCC---CCcchHHHHHHHHHHHHHcC------CEEEEC----------------------CCCcEEEEe-CC
Confidence 356676 4444 23345689999999999998 444221 013777765 32
Q ss_pred CCCCCCCeEEEeeecCCCCC------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchH
Q 008900 139 DSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAH 206 (549)
Q Consensus 139 ~~~~~~~~Vll~aH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~ 206 (549)
+.+.|++++|+|+||. ++|+.|+++|+|+++++++.|.+. ..+|.|++..+||.|..|++
T Consensus 49 ----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~ 120 (336)
T TIGR01902 49 ----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAR 120 (336)
T ss_pred ----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHH
Confidence 2467999999999974 579999999999999999999764 35899999999999999999
Q ss_pred HHHhhcCccCcccEEEEeccCC
Q 008900 207 GFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 207 ~f~~~~~~~~~v~a~INLD~~G 228 (549)
.++++++ . .++|..|..+
T Consensus 121 ~~~~~~~--~--~~~ii~ept~ 138 (336)
T TIGR01902 121 EVIDKNY--P--FYVIVGEPSG 138 (336)
T ss_pred HHHhhcC--C--CEEEEecCCC
Confidence 9998653 2 2677778654
No 65
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.06 E-value=2.1e-09 Score=114.45 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=97.2
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeCCC
Q 008900 60 VRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTD 139 (549)
Q Consensus 60 l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~ 139 (549)
+++|. +|.+ .|.+++++++||.++|++++.+ .++++.. + .||++++.+.
T Consensus 2 l~~Lv-~ipS---~s~~e~~~~~~i~~~l~~~g~~-----~~~~~~~---~------------------~nvva~~~~~- 50 (373)
T TIGR01900 2 LQQIM-DIFS---PSDHEGPIADEIEAALNNLELE-----GLEVFRF---G------------------DNVLARTDFG- 50 (373)
T ss_pred hHHHh-CCCC---CCchHHHHHHHHHHHHhhcccc-----CceEEEE---C------------------CEEEEecCCC-
Confidence 45666 4444 2344558899999999988621 1223221 1 3999997542
Q ss_pred CCCCCCeEEEeeecCCCCC-------------------------------CCCCCCCchHHHHHHHHHHHHHh--cCCCC
Q 008900 140 SQDTDPSVLMNGHFDGPLS-------------------------------SPGAGDCGSCVASMLELARLTID--SGWIP 186 (549)
Q Consensus 140 ~~~~~~~Vll~aH~Dsv~~-------------------------------spGA~Dd~sgva~~LE~ar~L~~--~~~~p 186 (549)
+.+.|++++|+|+||. ++|+.|+++|+|++|.+++.+.+ .+..+
T Consensus 51 ---~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~ 127 (373)
T TIGR01900 51 ---KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETEL 127 (373)
T ss_pred ---CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCC
Confidence 2356999999999963 35899999999999999999953 34567
Q ss_pred CCCEEEEEeCcccCCC--cchHHHHhhcCccCcccEEEEeccCC
Q 008900 187 PRPIIFLFNGAEELFM--LGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 187 ~~~I~flf~~~EE~gl--~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
+++|.|+|.++||.+. .|+..++++++...+..++|..|..+
T Consensus 128 ~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~ 171 (373)
T TIGR01900 128 KHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPTG 171 (373)
T ss_pred CCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCCC
Confidence 8899999999999863 59999988654223567788887553
No 66
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.02 E-value=3.7e-09 Score=115.28 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCCC----CC-----ChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccc
Q 008900 55 RAIQHVRVLADEIGDRQ----EG-----RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGY 125 (549)
Q Consensus 55 ra~~~l~~La~~ig~R~----~g-----S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~ 125 (549)
...+.+++|. +|.+-. .+ .++..++.+|+.++++++| ++++.-
T Consensus 3 ~~i~ll~~Lv-~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~~~--------------------- 54 (447)
T TIGR01887 3 EILEDLKELI-RIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDG------FTTENV--------------------- 54 (447)
T ss_pred HHHHHHHHhc-CcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcC------ceEEEe---------------------
Confidence 4667777777 455421 11 1234588999999999998 443310
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeeecCCCCC-------------------CCCCCCCchHHHHHHHHHHHHHhcCCCC
Q 008900 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIP 186 (549)
Q Consensus 126 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 186 (549)
.|+.++.+..+ ..+.|++++|+|+||. ++|+.|++.|+++++++++.|.+.+.++
T Consensus 55 ---~~~~~~~~~~~---~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~ 128 (447)
T TIGR01887 55 ---DNYAGYAEYGQ---GEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKL 128 (447)
T ss_pred ---cCceEEEEeCC---CCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCC
Confidence 13333332211 2357999999999974 4699999999999999999999888888
Q ss_pred CCCEEEEEeCcccCCCcchHHHHhhc
Q 008900 187 PRPIIFLFNGAEELFMLGAHGFMKAH 212 (549)
Q Consensus 187 ~~~I~flf~~~EE~gl~GS~~f~~~~ 212 (549)
+++|.|++..+||.|..|+..++++.
T Consensus 129 ~~~i~~~~~~dEE~g~~g~~~~l~~~ 154 (447)
T TIGR01887 129 KKKIRFIFGTDEETGWACIDYYFEHE 154 (447)
T ss_pred CCcEEEEEECCcccCcHhHHHHHHhc
Confidence 99999999999999999999998753
No 67
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.00 E-value=2.9e-08 Score=104.04 Aligned_cols=150 Identities=22% Similarity=0.194 Sum_probs=98.2
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCCCCCCc--------
Q 008900 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLD-------- 233 (549)
Q Consensus 162 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G~gg~~-------- 233 (549)
|-||..||++++|++|.| + +..++.+++|+|+.-||.|+.|++....+ -+-..+|.+|..+++...
T Consensus 178 alDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~----i~pd~aiavd~~~~~d~~~~~~~~~~ 251 (355)
T COG1363 178 ALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR----IKPDIAIAVDVTPAGDTPGVPKGDVK 251 (355)
T ss_pred eccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc----cCCCEEEEEecccccCCCCCcccccc
Confidence 789999999999999999 4 56789999999999999999999976653 334677888887765431
Q ss_pred ------eEE-ec-CCC-CchhhHh---hhhccccccccccccccCCCC-CCCchHHHhhcCCCCcEEEEEEecCCCcCCC
Q 008900 234 ------LVC-QS-GPS-SWPSSVY---AQSAIYPMAHSAAQDVFPVIP-GDTDYRIFSQDYGDIPGLDIIFLIGGYYYHT 300 (549)
Q Consensus 234 ------~lf-q~-~p~-~~~~~~y---~~~~~~p~~~~~~~~~f~~ip-s~sD~~~F~~~~~giPgld~a~~~~~y~YHT 300 (549)
+.+ .. ++. +.+.+.. ++...-|+-. ...| .+||-..+...-.|+|...+...- .+-|+
T Consensus 252 lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q~-------~v~~~ggTDA~a~~~~g~gvpta~Igip~--ry~Hs 322 (355)
T COG1363 252 LGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQV-------DVSPGGGTDAGAAHLTGGGVPTALIGIPT--RYIHS 322 (355)
T ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeEE-------EecCCCCccHHHHHHcCCCCceEEEeccc--ccccC
Confidence 111 11 111 1111110 1111112111 1233 588988876444679998886432 24577
Q ss_pred ccCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 008900 301 SHDTVDRLLPGSVQARGDNLFNVLKAFSN 329 (549)
Q Consensus 301 ~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 329 (549)
++. .++.+.+.++.+.+.++++++..
T Consensus 323 ~~e---~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 323 PVE---VAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred cce---eecHHHHHHHHHHHHHHHHhcch
Confidence 655 55678888888888888877654
No 68
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.99 E-value=3.2e-08 Score=104.24 Aligned_cols=145 Identities=20% Similarity=0.147 Sum_probs=84.1
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCCC--------CCCc
Q 008900 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGT--------GGLD 233 (549)
Q Consensus 162 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G~--------gg~~ 233 (549)
+.||++||+++++++|.|.+.+.+++.+|.|+|+..||.| .|+. +....+...+|.+|.+.. +|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa-----~~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGAS-----HALPPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccch-----hcccHhhhccEEEEecccCCCCCcCCCCce
Confidence 4899999999999999999877778899999999999999 5632 112233444567775432 1223
Q ss_pred eE-EecCCC--CchhhHhh---hhccccccccccccccCCCCCCCchHHHhhcCCCCcEEEEEEecCCCcCCCccCCcCC
Q 008900 234 LV-CQSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDR 307 (549)
Q Consensus 234 ~l-fq~~p~--~~~~~~y~---~~~~~p~~~~~~~~~f~~ips~sD~~~F~~~~~giPgld~a~~~~~y~YHT~~Dt~d~ 307 (549)
+. ...++. +.+.+... +...-|+-. +++. ..+||-..+.....|+|...++.. -. +=|| .+.
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q~----~~~~--~~gtDa~~~~~~~~Gi~t~~i~iP-~R-y~Hs----~e~ 322 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQDHGIPHRR----DVFR--YYRSDAASAVEAGHDIRTALVTFG-LD-ASHG----YER 322 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCcEE----EecC--CCCChHHHHHHcCCCCCEEEeecc-cc-chhh----hhh
Confidence 31 222211 12222111 111223222 2221 135666555422379999887642 22 4577 455
Q ss_pred CCHHHHHHHHHHHHHHH
Q 008900 308 LLPGSVQARGDNLFNVL 324 (549)
Q Consensus 308 id~~~lq~~g~~~l~l~ 324 (549)
++.+.++++.+.+.+++
T Consensus 323 ~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 323 THIDALEALANLLVAYA 339 (343)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 66777777776665554
No 69
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.94 E-value=9.6e-09 Score=109.07 Aligned_cols=132 Identities=22% Similarity=0.284 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhcCCCCC-CChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceE
Q 008900 53 EARAIQHVRVLADEIGDRQE-GRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~-gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NV 131 (549)
.+++.+.+++|. +|.+... ++.+++++.+|+.++|+ | +++++++. + ....|+
T Consensus 5 ~~~~~~~l~~Lv-~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~~~---~---------------~~~~nl 57 (364)
T PRK08737 5 LESTLDHLQALV-SFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVIDH---G---------------AGAVSL 57 (364)
T ss_pred HHHHHHHHHHHh-CCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEecC---C---------------CCceEE
Confidence 456888999998 6776432 22234688999999996 4 45554431 1 123588
Q ss_pred EEEEeCCCCCCCCCeEEEeeecCCCCC-------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEE
Q 008900 132 VMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (549)
Q Consensus 132 i~~i~G~~~~~~~~~Vll~aH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~f 192 (549)
+++ .|+ +.|++++|+|+||. ++|+.|+++|+|+++.+++. ++.+|.|
T Consensus 58 i~~-~g~------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~ 123 (364)
T PRK08737 58 YAV-RGT------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAF 123 (364)
T ss_pred EEE-cCC------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEE
Confidence 886 342 35999999999984 35999999999999999873 3568999
Q ss_pred EEeCcccCCC-cchHHHHhhcCccCcccEEEEeccCC
Q 008900 193 LFNGAEELFM-LGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 193 lf~~~EE~gl-~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
+++.+||.|. .|++.++++.. +..++|..|..+
T Consensus 124 ~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ept~ 157 (364)
T PRK08737 124 LFSSDEEANDPRCVAAFLARGI---PYEAVLVAEPTM 157 (364)
T ss_pred EEEcccccCchhhHHHHHHhCC---CCCEEEEcCCCC
Confidence 9999999987 68888887542 346677767553
No 70
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.93 E-value=1.8e-08 Score=107.79 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeE-EEEeeeecCcccceeccccccccccccceEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRI-EIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~v-ev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
+++.+.+++|. ++.+ .+..+.++.+||.++++++| ++. +.+ ...|++
T Consensus 13 ~~~~~~l~~Lv-~ips---~s~~e~~~~~~l~~~l~~~g------~~~~~~~----------------------~~~~v~ 60 (395)
T TIGR03526 13 GDMIRFLRDLV-AIPS---ESGDEGRVALRIKQEMEKLG------FDKVEID----------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHh-cCCC---CCCchHHHHHHHHHHHHHcC------CceEEEc----------------------CCCcEE
Confidence 45667777777 4443 23345588999999999998 431 221 014888
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEE
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 191 (549)
+++ |.+ .+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+.+..++.++.
T Consensus 61 ~~~-g~~----~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~ 135 (395)
T TIGR03526 61 GYI-GHG----PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLL 135 (395)
T ss_pred EEe-CCC----CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEE
Confidence 987 432 357999999999984 479999999999999999999988777778999
Q ss_pred EEEeCcccC-CCcchHHHHhhcCccCcccEEEEecc
Q 008900 192 FLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEA 226 (549)
Q Consensus 192 flf~~~EE~-gl~GS~~f~~~~~~~~~v~a~INLD~ 226 (549)
|++..+||. +..|++.++++... +..++|..|.
T Consensus 136 ~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~i~~ep 169 (395)
T TIGR03526 136 VTGTVQEEDCDGLCWQYIIEEDKI--KPEFVVITEP 169 (395)
T ss_pred EEEecccccCCcHhHHHHHhccCC--CCCEEEecCC
Confidence 999999993 44566666664332 3456666664
No 71
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.93 E-value=1.8e-08 Score=106.63 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=97.0
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeC
Q 008900 58 QHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISS 137 (549)
Q Consensus 58 ~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G 137 (549)
+.+++|. +|.. + |..++++++||.++|+++| ++++... . ...|++++++|
T Consensus 3 ~~~~~L~-~ips-~--s~~E~~~a~~l~~~l~~~g------~~~~~~~--~------------------~~~~vva~~~~ 52 (363)
T TIGR01891 3 DIRRHLH-EHPE-L--SFEEFKTSSLIAEALESLG------IEVRRGV--G------------------GATGVVATIGG 52 (363)
T ss_pred HHHHHHh-cCCC-C--CCchHHHHHHHHHHHHHcC------CceEecC--C------------------CCcEEEEEEeC
Confidence 4567777 4433 2 3455689999999999998 4443210 0 12599999976
Q ss_pred CCCCCCCCeEEEeeecCCCCCC-----------------CCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 008900 138 TDSQDTDPSVLMNGHFDGPLSS-----------------PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (549)
Q Consensus 138 ~~~~~~~~~Vll~aH~Dsv~~s-----------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~ 200 (549)
.+ +.+.|++++|+|+||.+ .|+ ++++++++.+++.|++.+.+++++|.|+|..+||.
T Consensus 53 ~~---~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~ 126 (363)
T TIGR01891 53 GK---PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEG 126 (363)
T ss_pred CC---CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcC
Confidence 43 23679999999999831 122 36789999999999876667788999999999998
Q ss_pred CCcchHHHHhhcCccCcccEEEEeccCC
Q 008900 201 FMLGAHGFMKAHKWRDSVGAVINVEASG 228 (549)
Q Consensus 201 gl~GS~~f~~~~~~~~~v~a~INLD~~G 228 (549)
+ .|++.++++. +.+++.++|+.|...
T Consensus 127 ~-~G~~~~~~~~-~~~~~d~~i~~e~~~ 152 (363)
T TIGR01891 127 G-GGATKMIEDG-VLDDVDAILGLHPDP 152 (363)
T ss_pred c-chHHHHHHCC-CCCCcCEEEEECCCC
Confidence 6 7999988754 334567888888653
No 72
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.92 E-value=2e-08 Score=107.42 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCcee-EEEEeeeecCcccceeccccccccccccceEE
Q 008900 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (549)
Q Consensus 54 era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi 132 (549)
+++.+.+++|. ++.+ .+..++++.+||.++|+++| ++ ++++ ...|++
T Consensus 13 ~~~~~~~~~lv-~i~s---~s~~e~~~~~~l~~~l~~~G------~~~~~~~----------------------~~~n~~ 60 (395)
T TIGR03320 13 GDMIRFLRDLV-AIPS---ESGDEKRVAERIKEEMEKLG------FDKVEID----------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHH-cCCC---CCCchHHHHHHHHHHHHHhC------CcEEEEC----------------------CCCCEE
Confidence 56677777777 4443 23345689999999999998 43 1221 014888
Q ss_pred EEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEE
Q 008900 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (549)
Q Consensus 133 ~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 191 (549)
+++ |. +.+.|++.+|+|+||. ++|+.|+++|+|++|.+++.|.+.+.+++.+++
T Consensus 61 ~~~-g~----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~ 135 (395)
T TIGR03320 61 GYI-GH----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLL 135 (395)
T ss_pred EEe-CC----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEE
Confidence 887 43 1367999999999974 479999999999999999999988777788999
Q ss_pred EEEeCcccCC-CcchHHHHhhcCccCcccEEEEecc
Q 008900 192 FLFNGAEELF-MLGAHGFMKAHKWRDSVGAVINVEA 226 (549)
Q Consensus 192 flf~~~EE~g-l~GS~~f~~~~~~~~~v~a~INLD~ 226 (549)
|.+..+||.+ ..|++.++++... +..++|..|.
T Consensus 136 ~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~iv~ep 169 (395)
T TIGR03320 136 VTGTVQEEDCDGLCWQYIIEEDGI--KPEFVVITEP 169 (395)
T ss_pred EEecccccccCchHHHHHHHhcCC--CCCEEEEcCC
Confidence 9999999964 2344555554322 3456666664
No 73
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.85 E-value=1.8e-07 Score=98.77 Aligned_cols=147 Identities=22% Similarity=0.167 Sum_probs=93.4
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCCCC-----------
Q 008900 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG----------- 230 (549)
Q Consensus 162 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G~g----------- 230 (549)
|-||..||++++|++|.+++. +++.+++|+|+..||.|+.||+.-.... +...+|.+|.+-.+
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i----~pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKF----NPDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhC----CCCEEEEEecCCcCCCCCCCccccC
Confidence 789999999999999999864 5778999999999999999999654432 22467778865332
Q ss_pred -CCceE-EecCCC--CchhhHhh---hhccccccccccccccCCCCCCCchH--HHhhcCCCCcEEEEEEecCCCcCCCc
Q 008900 231 -GLDLV-CQSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYR--IFSQDYGDIPGLDIIFLIGGYYYHTS 301 (549)
Q Consensus 231 -g~~~l-fq~~p~--~~~~~~y~---~~~~~p~~~~~~~~~f~~ips~sD~~--~F~~~~~giPgld~a~~~~~y~YHT~ 301 (549)
|+.+. ...++. +.+.+... +...-|+-.. ....+||-. .+.. .|+|.+.++-. .. +=||+
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~-------~~~gGtDa~~~~~~~--~Gvpt~~i~ip-~R-y~Hs~ 318 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYY-------VAKGGTDAGAAHLKN--SGVPSTTIGVC-AR-YIHSH 318 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEe-------cCCCCchHHHHHHhC--CCCcEEEEccC-cc-cccCh
Confidence 33331 212221 11221111 1111222110 112356666 5543 79999988642 22 56888
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 008900 302 HDTVDRLLPGSVQARGDNLFNVLKAFS 328 (549)
Q Consensus 302 ~Dt~d~id~~~lq~~g~~~l~l~~~la 328 (549)
... ++.+.+.++.+.+.++++.+.
T Consensus 319 ~e~---i~~~D~~~~~~Ll~~~i~~l~ 342 (350)
T TIGR03107 319 QTL---YSIDDFLAAQAFLQAIVKKLD 342 (350)
T ss_pred hhe---eeHHHHHHHHHHHHHHHHhcC
Confidence 764 467788888888888887653
No 74
>PRK09961 exoaminopeptidase; Provisional
Probab=98.85 E-value=1.4e-07 Score=99.50 Aligned_cols=150 Identities=15% Similarity=0.028 Sum_probs=92.7
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCCCCCCce------
Q 008900 161 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDL------ 234 (549)
Q Consensus 161 GA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G~gg~~~------ 234 (549)
-+-||..||++++|++|.+++. +++.+++|+|+..||.|+.|++.-.... +...+|.+|.+-.++..-
T Consensus 163 kalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~i----~pd~~I~vDv~~~~d~~~~~~~~~ 236 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRAV----SPDVAIVLDTACWAKNFDYGAANH 236 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhcc----CCCEEEEEeccCCCCCCCCCCCcc
Confidence 4889999999999999999764 4679999999999999999999776532 235578888664322100
Q ss_pred -EEecCCC-----------CchhhHhhh---hccccccccccccccCCCCCCCchHHHhhcCCCCcEEEEEEecCCCcCC
Q 008900 235 -VCQSGPS-----------SWPSSVYAQ---SAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 299 (549)
Q Consensus 235 -lfq~~p~-----------~~~~~~y~~---~~~~p~~~~~~~~~f~~ips~sD~~~F~~~~~giPgld~a~~~~~y~YH 299 (549)
..-.||. +.+.+...+ ...-|+.. +. ....+||-..|.....|+|.+.+..- .. +=|
T Consensus 237 ~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~--~~ggGTDa~~~~~~~~Giptv~ig~p-~r-y~H 308 (344)
T PRK09961 237 RQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQA----DM--FSNGGTDGGAVHLTGTGVPTVVMGPA-TR-HGH 308 (344)
T ss_pred cccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEE----Ee--cCCCcchHHHHHHhCCCCCEEEechh-hh-ccc
Confidence 0111221 111111111 11111111 01 11246888877532268999998653 22 448
Q ss_pred CccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 008900 300 TSHDTVDRLLPGSVQARGDNLFNVLKAF 327 (549)
Q Consensus 300 T~~Dt~d~id~~~lq~~g~~~l~l~~~l 327 (549)
|+.. .++.+.+.++.+.+.++++.+
T Consensus 309 s~~E---~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 309 CAAS---IADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred Chhh---eEEHHHHHHHHHHHHHHHHHc
Confidence 8765 456777888888777777555
No 75
>PLN02693 IAA-amino acid hydrolase
Probab=98.76 E-value=1.3e-07 Score=102.82 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=92.0
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeCCC
Q 008900 60 VRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTD 139 (549)
Q Consensus 60 l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~ 139 (549)
+.++.+++-..+.-|-++.++.+||.++|+++| ++++... + ..|+++++. ++
T Consensus 49 ~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G------~~~~~~~----~-----------------~~~via~~g-~~ 100 (437)
T PLN02693 49 MVRIRRKIHENPELGYEEFETSKLIRSELDLIG------IKYRYPV----A-----------------ITGIIGYIG-TG 100 (437)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCC------CeeEecC----C-----------------CcEEEEEEC-CC
Confidence 444444555566667777799999999999998 5443211 1 269999983 22
Q ss_pred CCCCCCeEEEeeecCCCCCCC-----------C---CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcch
Q 008900 140 SQDTDPSVLMNGHFDGPLSSP-----------G---AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGA 205 (549)
Q Consensus 140 ~~~~~~~Vll~aH~Dsv~~sp-----------G---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS 205 (549)
+.+.|++.+|+|++|... | +.|.++++|+++.+++.|++.+.+.+.+|+|+|..+|| +..|+
T Consensus 101 ---~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE-~~~Ga 176 (437)
T PLN02693 101 ---EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE-GLSGA 176 (437)
T ss_pred ---CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc-chhhH
Confidence 247899999999998421 2 77888999999999999988765667899999999999 55799
Q ss_pred HHHHhhc
Q 008900 206 HGFMKAH 212 (549)
Q Consensus 206 ~~f~~~~ 212 (549)
+.++++.
T Consensus 177 ~~~i~~g 183 (437)
T PLN02693 177 KKMREEG 183 (437)
T ss_pred HHHHHCC
Confidence 9998754
No 76
>PLN02280 IAA-amino acid hydrolase
Probab=98.72 E-value=3.2e-07 Score=100.89 Aligned_cols=135 Identities=20% Similarity=0.227 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEe
Q 008900 57 IQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRIS 136 (549)
Q Consensus 57 ~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~ 136 (549)
.+.+++|.+.+-..+.-+.++.++.+||.++|+++| ++++... + ..|+++++
T Consensus 96 ~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G------~~~~~~~----~-----------------~~~vva~~- 147 (478)
T PLN02280 96 VAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMG------IMYRYPL----A-----------------KTGIRAWI- 147 (478)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCC------CeEEecC----C-----------------CCEEEEEE-
Confidence 445555554443444445566699999999999998 5544321 1 25999998
Q ss_pred CCCCCCCCCeEEEeeecCCCCCCC-----------C---CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCC
Q 008900 137 STDSQDTDPSVLMNGHFDGPLSSP-----------G---AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFM 202 (549)
Q Consensus 137 G~~~~~~~~~Vll~aH~Dsv~~sp-----------G---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl 202 (549)
|++ +++.|++.+|+|++|... | +.|..+++|+++.+++.|.+.+.+++.+|+|+|..+||.|.
T Consensus 148 g~~---~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~ 224 (478)
T PLN02280 148 GTG---GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGN 224 (478)
T ss_pred CCC---CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccccccc
Confidence 542 237899999999998521 1 33455699999999999987766778899999999999974
Q ss_pred cchHHHHhhcCccCcccEEEEe
Q 008900 203 LGAHGFMKAHKWRDSVGAVINV 224 (549)
Q Consensus 203 ~GS~~f~~~~~~~~~v~a~INL 224 (549)
|++.++++- ..+++.+++-+
T Consensus 225 -Ga~~li~~g-~~~~~d~~~~~ 244 (478)
T PLN02280 225 -GAKRMIGDG-ALDDVEAIFAV 244 (478)
T ss_pred -hHHHHHHCC-CCcCCCEEEEE
Confidence 999998753 22334444443
No 77
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.71 E-value=2e-07 Score=94.05 Aligned_cols=195 Identities=17% Similarity=0.185 Sum_probs=135.0
Q ss_pred ceeEEEEeeeecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHH
Q 008900 98 KFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELAR 177 (549)
Q Consensus 98 ~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar 177 (549)
+++|.+|....+|+.. |.+ ...+|+ .+..|++++|..+. .=|+||-||+|.+.-+++
T Consensus 152 dyeVvIDae~~dG~L~-----------yge-----fi~rg~----~~~eiLlst~lCHP---SmaNdn~SG~all~~lak 208 (435)
T COG4310 152 DYEVVIDAEHEDGSLD-----------YGE-----FIHRGT----SKDEILLSTYLCHP---SMANDNLSGLALLTFLAK 208 (435)
T ss_pred CeEEEEecccccCcee-----------hhh-----eeccCC----ccceeeeeecccCh---hhccCccchHHHHHHHHH
Confidence 3788888777666421 111 123554 34569999999994 479999999999999999
Q ss_pred HHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCc-cCcccEEEEeccCCCCCCceEEecCCCCchhh-Hhhhhcccc
Q 008900 178 LTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVEASGTGGLDLVCQSGPSSWPSS-VYAQSAIYP 255 (549)
Q Consensus 178 ~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~-~~~v~a~INLD~~G~gg~~~lfq~~p~~~~~~-~y~~~~~~p 255 (549)
.|+.. +.+.+.+|+|-. +-.||-.|..++.. -++++.-+.+-+.|.||..-..++--+.-+++ +-.+.-.+-
T Consensus 209 ~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~ 282 (435)
T COG4310 209 ALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHC 282 (435)
T ss_pred HHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcceEEEEecCCCCccceeccccchHHHHHHHHHHhcC
Confidence 99865 577899999875 46899999998843 46999999999999877544444422222221 111111111
Q ss_pred ccccccccccCCCCCCCchHHHhhcCCCCcEEEEEE-------ecCCCcCCCccCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 008900 256 MAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIF-------LIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFS 328 (549)
Q Consensus 256 ~~~~~~~~~f~~ips~sD~~~F~~~~~giPgld~a~-------~~~~y~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la 328 (549)
++ .-+++..+|-++|-|+|.. ||+++.- ++.-.-|||+.|+.+.+.|+.|..--+++++++..+.
T Consensus 283 -~s--~~~~~dF~p~G~DERQf~s-----Pg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE 354 (435)
T COG4310 283 -GS--NFKAADFLPYGSDERQFCS-----PGFNLPVGGLQRSRYGDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLE 354 (435)
T ss_pred -Cc--CceeeecccCCCchhhccC-----CCcCCchhhhhHhhcCCCccccCccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 11 1123467899999999974 5555421 1112389999999999999999888888999988885
Q ss_pred c
Q 008900 329 N 329 (549)
Q Consensus 329 ~ 329 (549)
.
T Consensus 355 ~ 355 (435)
T COG4310 355 I 355 (435)
T ss_pred h
Confidence 4
No 78
>PRK09864 putative peptidase; Provisional
Probab=98.70 E-value=1.2e-06 Score=92.49 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=90.4
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccCCCC-----------
Q 008900 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG----------- 230 (549)
Q Consensus 162 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~G~g----------- 230 (549)
|-||..||++++|++|.+++ ++.+++|+|+.-||.|+.|++.-....+ ....|.+|.+-++
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~----PDiaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK----PDVVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC----CCEEEEEecccCCCCCCCcccccc
Confidence 78999999999999999964 7799999999999999999997665332 2447777865322
Q ss_pred -----CCce-EEecCCC--CchhhHhh---hhccccccccccccccCCCCCCCchHHHhhcCCCCcEEEEEEecCCCcCC
Q 008900 231 -----GLDL-VCQSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 299 (549)
Q Consensus 231 -----g~~~-lfq~~p~--~~~~~~y~---~~~~~p~~~~~~~~~f~~ips~sD~~~F~~~~~giPgld~a~~~~~y~YH 299 (549)
|+.+ .+..++. +.+.+... +...-|+-. +.. ..++||-..+.....|+|.+.++. ..+ +=|
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~~--~~ggTDa~~i~~~~~Gvpt~~isi-P~R-Y~H 316 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQF----STM--KTGATDGGRYNVMGGGRPVVALCL-PTR-YLH 316 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceE----EEc--CCCCchHHHHHHhCCCCcEEEEee-ccC-cCC
Confidence 2222 1111221 11111111 111112211 111 113677665542237999998864 233 469
Q ss_pred CccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 008900 300 TSHDTVDRLLPGSVQARGDNLFNVLKAF 327 (549)
Q Consensus 300 T~~Dt~d~id~~~lq~~g~~~l~l~~~l 327 (549)
|+.... +.+.++++.+.+.++++.+
T Consensus 317 s~~e~~---~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 317 ANSGMI---SKADYDALLTLIRDFLTTL 341 (356)
T ss_pred CcceEe---EHHHHHHHHHHHHHHHHhc
Confidence 987654 5667777788777777665
No 79
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.67 E-value=1.3e-07 Score=99.48 Aligned_cols=158 Identities=20% Similarity=0.163 Sum_probs=118.4
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccc-cCCCceeEEEEeeeecCcccceecccccccccccc
Q 008900 50 RFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKE-RAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (549)
Q Consensus 50 ~fs~era~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~-~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~ 128 (549)
..+.||+++..-+|++- +-..||+++..-+++|..-+.++.. +.+|+ .-|. +++.+..-..
T Consensus 4 ~is~e~v~~lt~~LV~~--~SvtgT~GE~a~ad~l~~vL~~~pYFqehpe-----------d~~~-----~pi~nDpygR 65 (553)
T COG4187 4 RISSERVRALTLSLVSW--PSVTGTPGEGAFADRLLGVLGELPYFQEHPE-----------DLWL-----QPIHNDPYGR 65 (553)
T ss_pred hhhHHHHHHHHHHHeec--cccCCCcccccHHHHHHHHHhcCchhhhChH-----------hhcc-----cCCCCCcccc
Confidence 34678999988899843 5578999999999999999998762 11111 1111 1222222235
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeeecCCCCC------------------------------------------CCCCCCCc
Q 008900 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS------------------------------------------SPGAGDCG 166 (549)
Q Consensus 129 ~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~------------------------------------------spGA~Dd~ 166 (549)
.||.+-++|.+ +++.|++.+|+|+|.. +.|+.|++
T Consensus 66 ~nv~AlVrg~~---~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMK 142 (553)
T COG4187 66 RNVFALVRGGT---SKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMK 142 (553)
T ss_pred ceeEEEEecCC---CCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhh
Confidence 79999999953 5689999999999964 57999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcC-----ccCcccEEEEeccCCC
Q 008900 167 SCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK-----WRDSVGAVINVEASGT 229 (549)
Q Consensus 167 sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~-----~~~~v~a~INLD~~G~ 229 (549)
+|.|+-|..++.+.+. ...+.+|.|+.+.+||....|.++-+.+.+ ..-...++||+|..+.
T Consensus 143 sGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 143 SGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred hhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 9999999999999875 456789999999999988888776654331 2346789999998853
No 80
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.45 E-value=1.1e-06 Score=91.70 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHcccccCCCceeEEEEee-eecCcccceeccccccccccc
Q 008900 53 EARAIQHVRVLADEIGDRQEGR----PGLREAAVYIKTQLEGIKERAGPKFRIEIEEN-VVNGSFNMIFLGHSISLGYRN 127 (549)
Q Consensus 53 ~era~~~l~~La~~ig~R~~gS----~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~-~~~g~~~~~~~~~~~~~~~~~ 127 (549)
.++..+.|++.. .|.+ ...- ..-.+.++|+.++++++|... .-..+-.| .++|. +..
T Consensus 15 ~de~~~~L~e~v-~iqs-vs~dp~~r~~v~rm~~~~~~~l~~lG~~~---~l~dlg~q~~~~g~-------------~v~ 76 (473)
T KOG2276|consen 15 KDEFINTLREAV-AIQS-VSADPTKRLEVRRMADWLRDYLTKLGAPL---ELVDLGYQSLPDGQ-------------IVP 76 (473)
T ss_pred HHHHHHHHHHHh-cccc-cccCccccHHHHHHHHHHHHHHHHhCCce---eeeecccCCCCCCc-------------ccc
Confidence 345666677766 5655 2222 223378999999999999322 11111111 11221 111
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeeecCCCCC---------------------CCCCCCCchHHHHHHHHHHHHHhcCCCC
Q 008900 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 186 (549)
Q Consensus 128 ~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 186 (549)
..-++--..|++| +++.|++..|+|.+|. +.|+.||+.-++.-+++++++.+.|...
T Consensus 77 lPpvvl~~~Gsdp--~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~l 154 (473)
T KOG2276|consen 77 LPPVVLGVLGSDP--SKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDL 154 (473)
T ss_pred cChhhhhcccCCC--CcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccc
Confidence 1122222236654 5689999999999986 5799999999999999999999999899
Q ss_pred CCCEEEEEeCcccCCCcchHHHHhhc
Q 008900 187 PRPIIFLFNGAEELFMLGAHGFMKAH 212 (549)
Q Consensus 187 ~~~I~flf~~~EE~gl~GS~~f~~~~ 212 (549)
+.+|+|+|-+.||.|..|-...++..
T Consensus 155 pvnv~f~~EgmEEsgS~~L~~l~~~~ 180 (473)
T KOG2276|consen 155 PVNVVFVFEGMEESGSEGLDELIEKE 180 (473)
T ss_pred cceEEEEEEechhccCccHHHHHHHH
Confidence 99999999999999999988877643
No 81
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5.3e-05 Score=81.41 Aligned_cols=187 Identities=16% Similarity=0.138 Sum_probs=120.6
Q ss_pred cccceEEEEEeCCC---CCCC-CCeEEEeeecCCCC----CCCCCCCCchHHHHHHHHHHHHHhcC--CCCCCCEEEEEe
Q 008900 126 RNHTNIVMRISSTD---SQDT-DPSVLMNGHFDGPL----SSPGAGDCGSCVASMLELARLTIDSG--WIPPRPIIFLFN 195 (549)
Q Consensus 126 ~~~~NVi~~i~G~~---~~~~-~~~Vll~aH~Dsv~----~spGA~Dd~sgva~~LE~ar~L~~~~--~~p~~~I~flf~ 195 (549)
-..+||....++-. ..++ +++++..+-+|+.. .++|+...-++....|.++|+|++.+ ...+|+|.|+|+
T Consensus 155 l~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f 234 (596)
T KOG2657|consen 155 LHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFF 234 (596)
T ss_pred cCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEe
Confidence 34578887776532 1122 68899999999964 37788889999999999999997643 356899999999
Q ss_pred CcccCCCcchHHHHhhc---C--cc-Cc---ccEEEEeccCCCC-CCceEEecCCCC--c-------hhhHhhhhcc-cc
Q 008900 196 GAEELFMLGAHGFMKAH---K--WR-DS---VGAVINVEASGTG-GLDLVCQSGPSS--W-------PSSVYAQSAI-YP 255 (549)
Q Consensus 196 ~~EE~gl~GS~~f~~~~---~--~~-~~---v~a~INLD~~G~g-g~~~lfq~~p~~--~-------~~~~y~~~~~-~p 255 (549)
.||-.+.+||.+++-+. + .+ ++ +..++.+-.+|-+ ++.+....++.. . ..+.+.|+.. ++
T Consensus 235 ~get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~ 314 (596)
T KOG2657|consen 235 NGETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHA 314 (596)
T ss_pred ecceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccC
Confidence 99999999999877543 2 11 23 7777777776643 333322223221 0 1122333322 34
Q ss_pred ccccccccccCCCCCCCchHHHhhcCCCCcEEEEEEecCCC---cCCCccCCcCCCCHHHH
Q 008900 256 MAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGY---YYHTSHDTVDRLLPGSV 313 (549)
Q Consensus 256 ~~~~~~~~~f~~ips~sD~~~F~~~~~giPgld~a~~~~~y---~YHT~~Dt~d~id~~~l 313 (549)
+.-....+.-..+|..| ...|.+.-.++.++-++-.+..+ +||+.+|+.|+++...-
T Consensus 315 f~ll~~s~~s~~lPPsS-lqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~ 374 (596)
T KOG2657|consen 315 FDLLKPSGSSDRLPPSS-LQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYE 374 (596)
T ss_pred eeeecCCCCCCCCChHH-HHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhh
Confidence 32222222223456644 44565523789999888665433 89999999999976643
No 82
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.86 E-value=6.1e-05 Score=77.80 Aligned_cols=131 Identities=23% Similarity=0.208 Sum_probs=79.7
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEeccC------CCC-----
Q 008900 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS------GTG----- 230 (549)
Q Consensus 162 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD~~------G~g----- 230 (549)
+-||..||++++|++|.+++. ..+.+++|+|+..||.|+.|++....+- +....|.+|.. +..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 679999999999999999875 3459999999999999999999776642 23455666644 221
Q ss_pred ---CCceE-EecCCC--CchhhHhh---hhccccccccccccccCCCCCCCchHHHhhcCCCCcEEEEEEecCCCcCCCc
Q 008900 231 ---GLDLV-CQSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTS 301 (549)
Q Consensus 231 ---g~~~l-fq~~p~--~~~~~~y~---~~~~~p~~~~~~~~~f~~ips~sD~~~F~~~~~giPgld~a~~~~~y~YHT~ 301 (549)
|+.+. ...++. +.+.+... +...-|+-... + ...+||-..+...-.|+|+..+..- -.+.||+
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~----~--~~ggTDa~~~~~~~~Gi~t~~i~iP--~ry~Hs~ 277 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQREV----F--SGGGTDAGAIQLSGGGIPTAVISIP--CRYMHSP 277 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EEEEE----E--SSSSSTHHHHHTSTTSSEEEEEEEE--EBSTTST
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeEEEe----c--CCcccHHHHHHHcCCCCCEEEEecc--cccCCCc
Confidence 22222 222221 11111111 11122332211 1 2357888887643369999988753 2368998
Q ss_pred cCCcC
Q 008900 302 HDTVD 306 (549)
Q Consensus 302 ~Dt~d 306 (549)
..+.+
T Consensus 278 ~e~~~ 282 (292)
T PF05343_consen 278 VEVID 282 (292)
T ss_dssp TEEEE
T ss_pred ceEEE
Confidence 87765
No 83
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=96.79 E-value=0.033 Score=59.97 Aligned_cols=138 Identities=21% Similarity=0.272 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEe
Q 008900 57 IQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRIS 136 (549)
Q Consensus 57 ~~~l~~La~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~ 136 (549)
.+.+.++...+-.++--+-++.++..||.+.|+++| ++ .++. .. .-+-+++++.
T Consensus 11 ~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g------~~-~~~~--~~-----------------~~TGvva~~~ 64 (392)
T COG1473 11 KDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELG------FE-VVEV--GG-----------------GKTGVVATLK 64 (392)
T ss_pred hHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcC------Ce-eEec--cC-----------------CceEEEEEEc
Confidence 334555555566666666677799999999999999 43 1111 11 0257899998
Q ss_pred CCCCCCCCCeEEEeeecCCCCC-----------CCC----CCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC
Q 008900 137 STDSQDTDPSVLMNGHFDGPLS-----------SPG----AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF 201 (549)
Q Consensus 137 G~~~~~~~~~Vll~aH~Dsv~~-----------spG----A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~g 201 (549)
|.+ +.+.|.+-|-+|..|. -|| .+=| .=++++|-+++.|++....++.+|+|+|-.+||.+
T Consensus 65 ~g~---~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~ 140 (392)
T COG1473 65 GGK---PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGG 140 (392)
T ss_pred CCC---CCCEEEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEEEeccccccc
Confidence 764 3458999999999983 233 2222 23678889999998765678999999999999988
Q ss_pred CcchHHHHhhcCccCc-ccEEEEecc
Q 008900 202 MLGAHGFMKAHKWRDS-VGAVINVEA 226 (549)
Q Consensus 202 l~GS~~f~~~~~~~~~-v~a~INLD~ 226 (549)
- |+...+++-.. ++ +.+++-+-.
T Consensus 141 ~-Ga~~mi~~G~~-~~~vD~v~g~H~ 164 (392)
T COG1473 141 G-GAKAMIEDGVF-DDFVDAVFGLHP 164 (392)
T ss_pred c-cHHHHHhcCCc-cccccEEEEecC
Confidence 7 99989885433 33 777766654
No 84
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=96.49 E-value=0.007 Score=65.34 Aligned_cols=61 Identities=18% Similarity=0.048 Sum_probs=49.3
Q ss_pred CCCCchHHHHHHHHHHHHHhcC-CCCCCCEEEEEeCcccCCCcchHHHHhhcCccCcccEEEEec
Q 008900 162 AGDCGSCVASMLELARLTIDSG-WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVE 225 (549)
Q Consensus 162 A~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~flf~~~EE~gl~GS~~f~~~~~~~~~v~a~INLD 225 (549)
..|+++|.+.++++++.+.+.. .-+..+|++.|.++||.|+.|++.|.-.. -.+....++|
T Consensus 142 gaD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~---f~a~~ay~iD 203 (414)
T COG2195 142 GADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVAR---FLADFAYTLD 203 (414)
T ss_pred CCcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHHh---hhcceeEecC
Confidence 3488899999999999998542 45778999999999999999999876532 3456667778
No 85
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=94.14 E-value=0.34 Score=54.01 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=73.0
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHH
Q 008900 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHG 207 (549)
Q Consensus 128 ~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~ 207 (549)
++|+++.++... .+..+.+++.+-+++.. | .-|..|++.+|.++|.+++..+- .++|+|++.++| ..|.++
T Consensus 3 G~nvy~i~rapR-~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~w-sKDii~l~~~~~---~~g~~a 73 (504)
T PF04114_consen 3 GTNVYGILRAPR-GDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSYW-SKDIIFLFTDDE---LAGMQA 73 (504)
T ss_pred ceEEEEEEecCC-CCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchhh-hccEEEEecCCc---chHHHH
Confidence 479999997643 24568899999888644 3 44589999999999999986543 689999999865 468889
Q ss_pred HHhhc--C---------c---cCcccEEEEeccCCCCCCce
Q 008900 208 FMKAH--K---------W---RDSVGAVINVEASGTGGLDL 234 (549)
Q Consensus 208 f~~~~--~---------~---~~~v~a~INLD~~G~gg~~~ 234 (549)
|++++ . + +-.+.+.||+|-.+.....+
T Consensus 74 wl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v 114 (504)
T PF04114_consen 74 WLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSV 114 (504)
T ss_pred HHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEE
Confidence 99764 1 1 12578999999877554443
No 86
>PRK02256 putative aminopeptidase 1; Provisional
Probab=84.79 E-value=1.3 Score=48.77 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=38.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHHH
Q 008900 160 PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGF 208 (549)
Q Consensus 160 pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~f 208 (549)
..+-||-.||.+++|+++... .++..+++++++-||.|..|++.-
T Consensus 256 s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA 300 (462)
T PRK02256 256 AYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGA 300 (462)
T ss_pred ccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhh
Confidence 578999999999999998654 356799999999999998777643
No 87
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.39 E-value=12 Score=41.88 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=56.6
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeeecCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCcchHH
Q 008900 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHG 207 (549)
Q Consensus 128 ~~NVi~~i~G~~~~~~~~~Vll~aH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~GS~~ 207 (549)
..||.+.+++... +..+.+++..-++.-. |. |..|++.++..++.+++..+ -.++|+|++.+++ ..|-.+
T Consensus 120 G~NvyGilRAPRg-dgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~y-WsKDII~v~~d~~---~~g~~A 189 (617)
T KOG3566|consen 120 GENVYGILRAPRG-DGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWVY-WSKDIIFVFTDGP---ALGLDA 189 (617)
T ss_pred CceEEEEEecCCC-CCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCee-ecccEEEEEeCCc---cccHHH
Confidence 5799999986532 3457788888877643 33 47899999999999987532 3689999999884 667788
Q ss_pred HHhhc
Q 008900 208 FMKAH 212 (549)
Q Consensus 208 f~~~~ 212 (549)
|++++
T Consensus 190 wLeaY 194 (617)
T KOG3566|consen 190 WLEAY 194 (617)
T ss_pred HHHHh
Confidence 88754
No 88
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=71.61 E-value=27 Score=37.98 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHHHHcccccCCCceeEEEEeeeecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeeec
Q 008900 74 RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHF 153 (549)
Q Consensus 74 S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~~~~~~~~Vll~aH~ 153 (549)
|+..-.++.++.+++.+.|...-. +.+-......|+|. ..++..++++-+-|++.....+.-++++|.
T Consensus 20 spTpyh~v~~i~~~L~~~Gf~~l~--e~~~w~~~~ggkyf----------~~r~gssliAf~ig~~~~~~~gf~IigaHt 87 (437)
T COG1362 20 SPTPYHVVANIAERLLKAGFRELE--EKDAWKDKPGGKYF----------VTRNGSSLIAFIIGKKWKLESGFRIIGAHT 87 (437)
T ss_pred CCChHHHHHHHHHHHHHcCchhhh--hhhcccccCCCeEE----------EEcCCceEEEEEecCCCCCCCCeEEEEeec
Confidence 344467889999999988743211 00011111234332 125567899988888754556788999999
Q ss_pred CCC
Q 008900 154 DGP 156 (549)
Q Consensus 154 Dsv 156 (549)
||.
T Consensus 88 DSP 90 (437)
T COG1362 88 DSP 90 (437)
T ss_pred CCC
Confidence 994
No 89
>PRK02813 putative aminopeptidase 2; Provisional
Probab=71.15 E-value=3.5 Score=45.10 Aligned_cols=141 Identities=15% Similarity=0.091 Sum_probs=81.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCCc---chHH-HHhhc------C---------ccCcccE
Q 008900 160 PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML---GAHG-FMKAH------K---------WRDSVGA 220 (549)
Q Consensus 160 pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE~gl~---GS~~-f~~~~------~---------~~~~v~a 220 (549)
.++-||-.||.+++|+++.+.+ +.++++++++-||.|.. |++. |+++- . ..-+-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 5789999999999999987642 67999999999999998 7774 22110 0 1123467
Q ss_pred EEEeccCCCCCCce----------EEecCCC------------CchhhHhh---hhcccccccccccccc-CCCCCCCch
Q 008900 221 VINVEASGTGGLDL----------VCQSGPS------------SWPSSVYA---QSAIYPMAHSAAQDVF-PVIPGDTDY 274 (549)
Q Consensus 221 ~INLD~~G~gg~~~----------lfq~~p~------------~~~~~~y~---~~~~~p~~~~~~~~~f-~~ips~sD~ 274 (549)
+|.+|.+-+..+.. ..-.||- ........ +...-|+-. .+. .-.|++||-
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~----~v~~~d~~gGsti 380 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQE----FVNRSDMPCGSTI 380 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEE----EEecCCCCCccHH
Confidence 78888764432111 0111110 00000000 111112111 011 235678998
Q ss_pred HHHhhcCCCCcEEEEEEecCCCcCCCccCCcCCCCHH
Q 008900 275 RIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPG 311 (549)
Q Consensus 275 ~~F~~~~~giPgld~a~~~~~y~YHT~~Dt~d~id~~ 311 (549)
.++.....|+|.+|+.--- -.=||+..+...-|..
T Consensus 381 g~i~~s~~Gi~tvdiGiP~--l~MHS~~E~~~~~D~~ 415 (428)
T PRK02813 381 GPITAARLGIRTVDVGAPM--LAMHSARELAGVKDHA 415 (428)
T ss_pred HHHHHhCCCCcEEEeChhh--cccccHHHHccHHHHH
Confidence 8886434799999986321 1569998887765544
No 90
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=61.23 E-value=11 Score=41.77 Aligned_cols=148 Identities=11% Similarity=-0.016 Sum_probs=80.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcC-CCCCCCEEEEEeCcccCCCcchHHHHhhc-Cc-------cCcc------------
Q 008900 160 PGAGDCGSCVASMLELARLTIDSG-WIPPRPIIFLFNGAEELFMLGAHGFMKAH-KW-------RDSV------------ 218 (549)
Q Consensus 160 pGA~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~flf~~~EE~gl~GS~~f~~~~-~~-------~~~v------------ 218 (549)
.++-||-.||.+++|+++.+.+.. ..+....++++++-||.|..|++.-.... +. ....
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 468899999999999998765310 11344555556999999998776543211 10 0011
Q ss_pred ---cEEEEeccCCC--CC----------------CceEEecC----CCCchhhHhh---hhcccccccccccccc-CCCC
Q 008900 219 ---GAVINVEASGT--GG----------------LDLVCQSG----PSSWPSSVYA---QSAIYPMAHSAAQDVF-PVIP 269 (549)
Q Consensus 219 ---~a~INLD~~G~--gg----------------~~~lfq~~----p~~~~~~~y~---~~~~~p~~~~~~~~~f-~~ip 269 (549)
..+|.+|++-+ .+ +.+.+.+. .++....... +...-|+-.. +. ...|
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~----~~~~d~~ 402 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEF----VVKNDSP 402 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEE----EecCCCC
Confidence 17788887643 11 11111100 0000111111 1111122111 11 2456
Q ss_pred CCCchHHHhhcCCCCcEEEEEEecCCCcCCCccCCcCCCCHHHH
Q 008900 270 GDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSV 313 (549)
Q Consensus 270 s~sD~~~F~~~~~giPgld~a~~~~~y~YHT~~Dt~d~id~~~l 313 (549)
++||-.++.....|+|.+|+.--- -.=||+..+...-|...+
T Consensus 403 ~GsTig~i~~s~~Gi~tvDiGiP~--l~MHS~rE~~~~~D~~~~ 444 (465)
T PTZ00371 403 CGSTIGPILSSNLGIRTVDIGIPQ--LAMHSIREMCGVVDIYYL 444 (465)
T ss_pred CcchHHHHHHhCCCCcEEEechhh--cccccHHHHccHHHHHHH
Confidence 788888876434799999986321 256999988876665443
No 91
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=51.09 E-value=70 Score=28.96 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeech-hhH--HHHHHHHHHHHH
Q 008900 408 VKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAH-PFL--AFMMFIPCSLLG 460 (549)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~m~w~s~-~~l--~~~ly~~~~~~g 460 (549)
..||+-+.=|+.+...+|+..++.+. -+.+.||+| .|. ++++.+|..++.
T Consensus 38 GLGFLsq~EGLFi~~LlPlFA~iALl---analgW~sHRQW~Rs~lG~iGP~lvl~ 90 (139)
T PRK13755 38 GLGFLSQYEGLFISTLLPLFAAIALL---ANALGWFSHRQWLRSALGMIGPALVLA 90 (139)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 34555566677777777876554332 588999998 443 566667755443
No 92
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=49.96 E-value=1.8 Score=38.81 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=35.7
Q ss_pred eEccchhhhhhHccHHHHHHHhhhhHHHh-----hccceEEEEecccchhHHHHHHH
Q 008900 355 IFFDYLTWFMIYYSRSRATVLHGIPIVIF-----ITVPFFLRLLNSGLHSWFATYSD 406 (549)
Q Consensus 355 V~fd~lg~~~~~y~~~~a~~l~~~~~~~~-----~~~~~~~~~~n~~~~~~~~~~~~ 406 (549)
|.|+.|..++..|.. +|..++..+.... ...+..+|++|+++|..||.|++
T Consensus 2 l~l~~L~~ai~~~~~-aa~~f~~~~~~~~~~~~~~~~~~~~r~~N~~L~~~Er~Fl~ 57 (125)
T PF04253_consen 2 LDLDPLKKAISKFKK-AAKEFQEWIKSWDEIVGIEPDPLAVRRLNDRLMQFERAFLD 57 (125)
T ss_dssp --SHHHHHHHHHHHH-HHHHHHHHHHHS------TT-HHHHHHHHHHHHHHHHCTB-
T ss_pred cChHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHhC
Confidence 567788888889988 6777877666555 33445677789999999997754
No 93
>PRK02813 putative aminopeptidase 2; Provisional
Probab=48.86 E-value=81 Score=34.61 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcccccCCCceeEEEEee-----eecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEee
Q 008900 77 LREAAVYIKTQLEGIKERAGPKFRIEIEEN-----VVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNG 151 (549)
Q Consensus 77 ~e~a~~yl~~~l~~ig~~~~~~~~vev~~~-----~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~~~~~~~~Vll~a 151 (549)
.-.+++++.++|++-|-. |+++. .+.|.|.. .++...+++-.-|+++...+...+++|
T Consensus 21 ~~hav~~~~~~L~~~Gf~-------~l~e~~~w~l~~g~kyy~----------~r~~~sliAf~vg~~~~~~~g~~iv~a 83 (428)
T PRK02813 21 PFHAVANVAQRLEAAGFT-------ELDETDAWKLEPGGRYYV----------VRNGSSLIAFRVGEGAPAETGFRIVGA 83 (428)
T ss_pred HHHHHHHHHHHHHHcCCe-------eccccccCccCCCCEEEE----------EcCCcEEEEEEeCCCCccCCCeEEEEE
Confidence 357899999999998832 22221 12232221 244567888887775422256899999
Q ss_pred ecCCCC
Q 008900 152 HFDGPL 157 (549)
Q Consensus 152 H~Dsv~ 157 (549)
|.|+..
T Consensus 84 H~DsP~ 89 (428)
T PRK02813 84 HTDSPG 89 (428)
T ss_pred eccCCC
Confidence 999953
No 94
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=34.78 E-value=97 Score=34.38 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHcccccCCCceeEEEEee-----eecCcccceeccccccccccccceEEEEEeCCCCC-CCCCeEEE
Q 008900 76 GLREAAVYIKTQLEGIKERAGPKFRIEIEEN-----VVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQ-DTDPSVLM 149 (549)
Q Consensus 76 ~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~-----~~~g~~~~~~~~~~~~~~~~~~~NVi~~i~G~~~~-~~~~~Vll 149 (549)
..-.+++++.+.|++-|-+. +++. .+.|.|.. .++...+++-.-|++.. ..+...++
T Consensus 21 t~~hav~~~~~~L~~~GF~~-------l~e~~~w~l~~g~kyyv----------~r~~ssl~Af~vg~~~~~~~~g~~iv 83 (465)
T PTZ00371 21 SPFHAVQELKERLKKSGFKQ-------LNEGENWKLEKGGKYYL----------TRNNSTIVAFTVGKKFDAPNGGFKIV 83 (465)
T ss_pred CHHHHHHHHHHHHHHCcCEE-------ccccccCccCCCCEEEE----------EcCCcEEEEEEeCCCCccCCCCeEEE
Confidence 33578999999999988322 2211 12233321 14455788877776421 23468899
Q ss_pred eeecCCC
Q 008900 150 NGHFDGP 156 (549)
Q Consensus 150 ~aH~Dsv 156 (549)
+||.||.
T Consensus 84 gaHtDsP 90 (465)
T PTZ00371 84 GAHTDSP 90 (465)
T ss_pred EEeccCC
Confidence 9999994
No 95
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.45 E-value=5.9e+02 Score=26.54 Aligned_cols=23 Identities=35% Similarity=0.830 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCC
Q 008900 448 LAFMMFIPCSLLGLLIPRSLWSHFP 472 (549)
Q Consensus 448 l~~~ly~~~~~~g~~~~~~~~~~~~ 472 (549)
+-+.||.|++.+++.-| +|+.++
T Consensus 170 i~fllftPcsyVcWyRP--lYkAFR 192 (313)
T KOG3088|consen 170 IWFLLFTPCSYVCWYRP--LYKAFR 192 (313)
T ss_pred HHHHHhCCceeeEeehH--HHHHhc
Confidence 33456667777777766 555554
No 96
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.26 E-value=5.1e+02 Score=32.67 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008900 399 SWFATYSDFVKGMMIHATGKMLAIIFPIAF 428 (549)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (549)
++...+..++..+++.++|+ .+.++|+++
T Consensus 62 Nl~GiVGA~LAD~L~~LFGl-~AYLLP~LL 90 (1355)
T PRK10263 62 NLGGMPGAWLADTLFFIFGV-MAYTIPVII 90 (1355)
T ss_pred cccchHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 33344455555555555553 344444433
No 97
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=26.20 E-value=2.3e+02 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHH-HhhhhHHHHHHHHHHHhHHHHHHHHH
Q 008900 497 FGFYAMLTMAYL-VAGLTGGFLTFIVATSMLPAWIFFCI 534 (549)
Q Consensus 497 ~~~~~~l~~~~~-~~g~~s~y~~~~~~~~~~~~~~~~~~ 534 (549)
+++.++++++++ ..|.+.+|..+-.+++.+.+.-.+|+
T Consensus 123 cv~~Si~ti~~~~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 123 CVIMSIITIIVNSVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 356777776665 45677888887777777665554444
No 98
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=23.75 E-value=1.4e+02 Score=31.71 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=42.4
Q ss_pred CCCCCchHHHhhcCCCCcEEEEEEecCC-CcCCCccCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 008900 268 IPGDTDYRIFSQDYGDIPGLDIIFLIGG-YYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSN 329 (549)
Q Consensus 268 ips~sD~~~F~~~~~giPgld~a~~~~~-y~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 329 (549)
.+++||...|.+ .|+|.+.+.-...+ ...|++.. +++.+.+.+..+.+..++..+++
T Consensus 342 ~~g~tDa~~~~~--~gip~v~fgp~~~~~~~aH~~dE---~i~i~~l~~~~~~~~~~l~~~~~ 399 (400)
T TIGR01880 342 LPGSTDSRYIRA--AGVPALGFSPMNNTPVLLHDHNE---FLNEAVFLRGIEIYQTLISALAS 399 (400)
T ss_pred ecCcchHHHHHh--CCCCeEEECCccCCcccccCCCC---ceEHHHHHHHHHHHHHHHHHhhc
Confidence 356799988875 68999765432211 25899876 68899999999999999988754
No 99
>PRK07033 hypothetical protein; Provisional
Probab=22.61 E-value=6.2e+02 Score=27.80 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=34.2
Q ss_pred CeEEEeeecCCCCCCCCC--CCCchHHHHHHHHHHHHHhcCCCCCCCEEEEEeCccc
Q 008900 145 PSVLMNGHFDGPLSSPGA--GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEE 199 (549)
Q Consensus 145 ~~Vll~aH~Dsv~~spGA--~Dd~sgva~~LE~ar~L~~~~~~p~~~I~flf~~~EE 199 (549)
..|.|.+|.|+.+...+. .....+..=.-.+.+.|.+.|..++ .|.....|.++
T Consensus 345 ~~I~V~GHTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gi~~~-ri~~~G~G~~~ 400 (427)
T PRK07033 345 GNVLVTGYSDNVPIRTARFPSNWELSQARAQAVRALLAARLGQPE-RVTAEGRGDSD 400 (427)
T ss_pred CeEEEEEEeCCCCccccccchHHHHHHHHHHHHHHHHHHcCCCcc-eEEEEEECCCC
Confidence 359999999998743222 3334455566667777877766543 46666665554
No 100
>PRK13381 peptidase T; Provisional
Probab=20.04 E-value=1.5e+02 Score=31.62 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=40.9
Q ss_pred CCCCCchHHHhhcCCCCcEEEEEEecCCCcCCCccCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 008900 268 IPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFS 328 (549)
Q Consensus 268 ips~sD~~~F~~~~~giPgld~a~~~~~y~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la 328 (549)
.+++||...|.+ .|+|.+.+..-. . .-||... +++.+.+.+..+.+..+++.++
T Consensus 350 ~~g~tDa~~~~~--~giP~v~~GpG~-~-~aH~~dE---~v~i~~l~~~~~v~~~~~~~~~ 403 (404)
T PRK13381 350 MRGGTDGAALSA--KGLPTPNLFTGA-H-NFHSRFE---FLPVSSFVKSYEVTITICLLAA 403 (404)
T ss_pred CCccchHHHHhc--CCCCeEEECccc-c-CCcCcce---eEEHHHHHHHHHHHHHHHHHhc
Confidence 456899999874 689999865322 2 3577654 6788999999999999988775
Done!