Query 008902
Match_columns 549
No_of_seqs 358 out of 2512
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 5.9E-28 2E-32 260.9 15.6 404 67-517 10-468 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 2.4E-25 8.1E-30 238.4 32.2 379 65-514 9-446 (491)
3 4gc0_A D-xylose-proton symport 99.9 1.5E-22 5.2E-27 216.4 23.9 180 105-335 55-243 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 7.5E-22 2.6E-26 208.2 22.9 180 66-278 25-205 (451)
5 3o7q_A L-fucose-proton symport 99.9 3.1E-20 1.1E-24 195.1 33.0 180 65-277 22-227 (438)
6 2gfp_A EMRD, multidrug resista 99.8 2.2E-19 7.6E-24 185.0 15.1 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.7 2.5E-17 8.6E-22 172.8 10.4 169 70-269 8-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 8E-13 2.7E-17 138.8 19.4 178 69-278 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.4E-11 8.3E-16 127.0 19.8 169 70-276 259-429 (438)
10 2cfq_A Lactose permease; trans 99.3 2.5E-11 8.7E-16 126.9 16.0 173 71-278 222-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 2.4E-10 8.1E-15 121.6 11.8 185 70-281 284-473 (491)
12 4gc0_A D-xylose-proton symport 99.1 5.6E-10 1.9E-14 118.6 14.6 185 68-284 276-467 (491)
13 2gfp_A EMRD, multidrug resista 98.8 2.6E-09 8.8E-14 109.4 4.1 165 69-267 199-364 (375)
14 2xut_A Proton/peptide symporte 98.0 4E-06 1.4E-10 89.5 6.3 90 186-281 404-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=5.9e-28 Score=260.93 Aligned_cols=404 Identities=22% Similarity=0.333 Sum_probs=251.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC------CChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~ 140 (549)
+++.++.+.+..++..+++|++..+++.|+++++| ++..+.+.+.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34456778888999999999999999999999999 999999999999999999999999999999559999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchh-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 008902 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 141 i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
++.++..++.+++.++ . +...++++|++.|++.+...++..++++|.+|++
T Consensus 90 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp HHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 9999999988887765 3 5678889999999999999999999999999987
Q ss_pred Cchhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHH
Q 008902 220 SKDYKTHLD---RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296 (549)
Q Consensus 220 ~~~~~~~r~---~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 296 (549)
+ |+ ..+++++.+.++|..++|.+++++.+..||++.|++.+++.++++++++..+++.+.+++++++..+.
T Consensus 142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (524)
T 2xut_A 142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215 (524)
T ss_dssp T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence 7 64 45566899999999999999999998899999999988887777666655555444333333332233
Q ss_pred HHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhh----hhcccccCCCCCC-------cccc
Q 008902 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA----LELKEDVINPSPW-------KLCT 365 (549)
Q Consensus 297 ~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~----~~~~~~~~~~~~~-------~~~~ 365 (549)
.+.+..+.++++.+. +.... +.... +.........+......+.... ...+. ..+.+| +.+.
T Consensus 216 ~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 288 (524)
T 2xut_A 216 LPVIRSALLTKVEGK-GNIGL-VLALI---GGVSAAYALVNIPTLGIVAGLCCAMVLVMGF--VGAGASLQLERARKSHP 288 (524)
T ss_dssp -----------CTTH-HHHHH-HHHHH---HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH--HHTGGGTHHHHSCCSCC
T ss_pred HHHHHHHHhhhhccc-Cccch-hhhhh---hhhhhhhhhcccchhhhhhhhhhhhhhhhcc--cccchhhHHhhhhcccc
Confidence 333333333221100 00000 00000 0000000000000000000000 00000 000011 0111
Q ss_pred chhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHhcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhcccc
Q 008902 366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR 445 (549)
Q Consensus 366 ~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr 445 (549)
..+.+++|+++..+.++.....++..+.|..+.+..+..+++.+. + .+.+.+..++.+..++..++.+++..+..+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (524)
T 2xut_A 289 DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIER 365 (524)
T ss_dssp SSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHh
Confidence 112244556665666666666777777777777766665554331 1 2455666777778888888888876555555
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhhccchhHHHH
Q 008902 446 ITGHPRGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIG 491 (549)
Q Consensus 446 ~~~~~~~~~~l~~i~~G~~l~~~~~~~~----------------------------------~~~~~~~~~~P~~~rg~~ 491 (549)
++++ .....++.+|+++.+++++.. ....+..+.+|++.||.+
T Consensus 366 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 442 (524)
T 2xut_A 366 MGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442 (524)
T ss_dssp --------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTT
T ss_pred cCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHH
Confidence 4322 344455555555544433211 112234566899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008902 492 SAYAALAGGLGCFAASILNSIIKSVT 517 (549)
Q Consensus 492 ~g~~~~~~~lg~~~~~~l~~~v~~~t 517 (549)
+|+++...++|+.+++.+.+.+...+
T Consensus 443 ~g~~~~~~~~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 443 MSFWTLSVTVGNLWVLLANVSVKSPT 468 (524)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999998876543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=2.4e-25 Score=238.36 Aligned_cols=379 Identities=19% Similarity=0.236 Sum_probs=257.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i 139 (549)
+++++.++.+.+..++..+++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 44566888999999999999999999999999998 9999999999999999999999999999999933999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 008902 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.++.++..++.++++++ .+...++++|++.|+|.+...++..++++|.+|++
T Consensus 89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 140 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140 (491)
T ss_dssp HHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence 99999999998887765 35678889999999999999999999999999987
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccccccc---CCCC-CchHH
Q 008902 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPLTR 295 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~---~~~~-~~~~~ 295 (549)
+.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++..++++..+ +++. ....+
T Consensus 141 ~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4aps_A 141 DRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEE 216 (491)
T ss_dssp TTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHH
T ss_pred ccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccch
Confidence 633 777888899999999999999999999999999999998877777766665443333221 1111 11111
Q ss_pred HHHHHHH--------------HHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhhh-hcccccCCCCC
Q 008902 296 VAQVLVA--------------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL-ELKEDVINPSP 360 (549)
Q Consensus 296 ~~~v~~~--------------a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~~~ 360 (549)
..+.... ...... .+..+. ............ ..... .
T Consensus 217 ~~~~~~~~g~~l~~~~~~~~~~~~~~~---~~~~~~--------------------~~~~~~~~~~~~~~~~~~-----~ 268 (491)
T 4aps_A 217 VKPLLVKVSLAVAGFIAIIVVMNLVGW---NSLPAY--------------------INLLTIVAIAIPVFYFAW-----M 268 (491)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHSS---CCTTHH--------------------HHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccC---cccccc--------------------hhhhhHHHHHHHHHHHHH-----H
Confidence 1110000 000000 000000 000000000000 00000 0
Q ss_pred CccccchhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHh-cccCCCCcccCCCccCchhHHHHHHHHHhhhhhh
Q 008902 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTF 439 (549)
Q Consensus 361 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~-~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~ 439 (549)
|+... ....++++....+++++....++..+.+..+.+..+... .+.+ ..+.+.+..++.+..++..++.+++.
T Consensus 269 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~ 343 (491)
T 4aps_A 269 ISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLW 343 (491)
T ss_dssp C-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHH
T ss_pred hhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHH
Confidence 00000 011344555566677777778888888777765444332 2222 14677788889999999999999998
Q ss_pred hhccccccCCCCCCCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhhccc
Q 008902 440 VPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPD 485 (549)
Q Consensus 440 ~~l~rr~~~~~~~~~~l~~i~~G~~l~~~~~~~~----------------------------------~~~~~~~~~~P~ 485 (549)
+++.||. +....++.+|+++.+++++.. ....++.+..|+
T Consensus 344 ~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 344 TAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK 417 (491)
T ss_dssp HHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred HHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 8887763 344455555555544432211 233455677999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008902 486 AMKSIGSAYAALAGGLGCFAASILNSIIK 514 (549)
Q Consensus 486 ~~rg~~~g~~~~~~~lg~~~~~~l~~~v~ 514 (549)
+.||.++|+.+....+|+.+++.+.+.+.
T Consensus 418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 418 AFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp TCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988866553
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.90 E-value=1.5e-22 Score=216.40 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCC-CCcc
Q 008902 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EPAK 183 (549)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (549)
...+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++.+++......... ... ...-
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----------~~~~~~~~ 122 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----------DNTVPVYL 122 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----------SSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----------hhHHHHHH
Confidence 3456788889999999999999999997 99999999999999999988864210000000 000 0000
Q ss_pred hhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------
Q 008902 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 255 (549)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-------- 255 (549)
..+...++++|++.|+|.|+..+..+.+++|..|++. |+...++++.+..+|..+++.+...+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 1578899999999999999999999999999999988 99999999999999999998887766432
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccccccccccCCCcccccCCccc
Q 008902 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI 335 (549)
Q Consensus 256 ~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~ 335 (549)
.+|++.+.+..+..++.++..+. .||||+| +..+++.+++.+.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~-L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRW-LMSRGKQEQAEGILRKI 243 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHH-HHHTTCHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHH-HHHcCchhHHHHhHHHh
Confidence 34676666555544444333222 5899999 88888777766655444
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.89 E-value=7.5e-22 Score=208.15 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=151.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
.+|+.++.+++..++..+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 3466677777777777777766666655 445567 9999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++++.... ..+...++++|++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWA------------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----- 152 (451)
T ss_dssp HHHHHHHHHHCHHH------------------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred HHHHHHHHHhhhhc------------------------cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-----
Confidence 99999888872100 0356788899999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHh
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.+++++.+.++|..++|.+++++.+..| ||+.|++.++..++..++.+.
T Consensus 153 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 153 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888888 999999888776665554433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.88 E-value=3.1e-20 Score=195.13 Aligned_cols=180 Identities=12% Similarity=-0.017 Sum_probs=149.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+++++.++.+.+..++..+..+.+... ..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 445667777777777777777555554 5567889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++..... ..+...++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhccc-------------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 99999888843211 0467889999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hhhc-------------------------hhHHHHHHHHHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~i~~~ 277 (549)
|+..+++++.+.++|..++|.+++++. +..+ |++.|++.++...+..++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5444 99999876665555544443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.80 E-value=2.2e-19 Score=185.02 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
+.+.+..++..+........++. +.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 44556666666766656665554 5678999999999999999999999999999999997 999999999999999988
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++.+. .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88775 577888999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q 008902 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i 274 (549)
++++...++|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887766555444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.70 E-value=2.5e-17 Score=172.80 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
..+......++..+++..+.++++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455566666666667767778899999999999999999999999999999999999999997 9999999888776553
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhH-HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
...+...... ... ..++.++.+.+++.+...+...+...+..++.. +.++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 3222111000 000 012233444444444333333333333332211 1155
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 56666667778999999999998876 58999988766553
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=8e-13 Score=138.80 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhc-chhHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GR~~~i~i~~~~~~ 147 (549)
+.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46777888888888999999999999999989999999999999999999999999999999832 88888887776655
Q ss_pred -HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 -ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
++.+++.+. +. .+...+.+..++.|++.+...+....+..|.+|++.
T Consensus 332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 379 (451)
T 1pw4_A 332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 379 (451)
T ss_dssp HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence 444443332 10 245566677788899888888888899999999888
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888777776665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=2.4e-11 Score=127.03 Aligned_cols=169 Identities=9% Similarity=0.009 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
.++...+..++.....+++..+++.| +++.+|++..+++...+...++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 45666667777778888888999999 8888899999999999999999999999999999997 999999999988887
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+++.+. .+... ++..++.+++.+...+...++..|.+|++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77666554 12222 34447788899988999999989998843 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~ 276 (549)
.+.++.. ...+|+.++|.+.+++.+..| ++..|++.+++.++.++..
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4444444 456999999999999999998 9999987766655544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.30 E-value=2.5e-11 Score=126.92 Aligned_cols=173 Identities=10% Similarity=0.053 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
.+...+..++....++....+++.|+.+.++.. ....+...+...++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333334444455555567888887766532 23335555556667778899999999997 99999988887777
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 665555432 233445555556666666666667889999999877 9
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++..++ ++....+|+.++|.+.|++.+..|+...|.+.+++.+++.++.+.
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 998888 577888999999999999998888888888877777776665544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.11 E-value=2.4e-10 Score=121.61 Aligned_cols=185 Identities=12% Similarity=0.026 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH-----HHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~-----i~~~ 144 (549)
..+.+.+..++....++.....++.|+.+.++.+....+.......++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344455555565666666777889999998888877777777778888888899999999997 9886544 5666
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+..... . ++...+...++++.++.|++.+...+....+..|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALY---G----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHC---C----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhc---C----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 6655555544431100 0 0001245566677788899999988999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccc
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
|+++.++++...++|..+++.+.+++.+. ++.+.|.+.+++.+++.++.+...+
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887654 5666777766666666665555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.11 E-value=5.6e-10 Score=118.64 Aligned_cols=185 Identities=9% Similarity=-0.000 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
++.........+....+.+.+.. ...++.+..+.+............+...++.++++++.||+ |||+.++.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~ 353 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLY-YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMA 353 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHh-cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHH
Confidence 33333333333444444444444 45566677788877777777777788889999999999997 99999999988888
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHH-HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY-TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
++.+.+...... .. .....+. +..+..+++ .+..+....+.+|.+|++.
T Consensus 354 ~~~~~l~~~~~~---~~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------ 403 (491)
T 4gc0_A 354 IGMFSLGTAFYT---QA--------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------ 403 (491)
T ss_dssp HHHHHHHHHHHT---TC--------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------
T ss_pred HHHHHHHHHHhc---cc--------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------
Confidence 777666554220 00 1222222 222222233 2334666788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh------hhchhHHHHHHHHHHHHHHHHHHhcccccc
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~------~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~ 284 (549)
|+++.++.+....+|+.+++.+.+.+.+ ..++.+.|++.+++.+++.+..++..|+.+
T Consensus 404 R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 9999999998889999988887766543 335566777777776666666655555444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.77 E-value=2.6e-09 Score=109.37 Aligned_cols=165 Identities=12% Similarity=-0.089 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH-HH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~-~~ 147 (549)
+.++...+..++.....+++..+++.|+++.+|.+..+++.......++..++.++.|+++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3566677777788888888889999999988999999999999999999999999999999997 772 2223222 22
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++..++..... + ..+...+++..++.+++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245556677788899999999999999999987 55 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHH
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~ 267 (549)
++..++++...++|..++|.+.+.+.+..+|...+.+.++
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999999888888877766443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.03 E-value=4e-06 Score=89.54 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--ch-----
Q 008902 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~--gw----- 258 (549)
+...++++.++.|++.+...+....+..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 44566677788999999999999999999999988 999999999999999999999999887642 23
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhccc
Q 008902 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 259 ----~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
+..|++.+++.+++.++++...+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33366666555555555544433
Done!