Query 008904
Match_columns 549
No_of_seqs 292 out of 2758
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 2.3E-60 8E-65 524.2 43.8 459 25-548 1-477 (823)
2 3o21_A Glutamate receptor 3; p 100.0 1E-53 3.5E-58 428.6 43.4 369 23-420 2-380 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 3.9E-52 1.3E-56 418.9 45.3 371 23-421 2-379 (389)
4 3sm9_A Mglur3, metabotropic gl 100.0 9.6E-53 3.3E-57 431.5 38.3 367 22-412 9-462 (479)
5 3ks9_A Mglur1, metabotropic gl 100.0 2.8E-52 9.6E-57 430.0 39.8 391 22-454 13-496 (496)
6 2e4u_A Metabotropic glutamate 100.0 8.6E-52 2.9E-56 433.7 42.8 390 22-457 10-486 (555)
7 3om0_A Glutamate receptor, ion 100.0 1.4E-51 4.8E-56 414.8 37.9 369 24-420 2-381 (393)
8 3h6g_A Glutamate receptor, ion 100.0 4E-51 1.4E-55 411.9 37.8 369 24-420 2-383 (395)
9 4f11_A Gamma-aminobutyric acid 100.0 5.9E-51 2E-55 415.8 38.2 385 22-449 10-422 (433)
10 3hsy_A Glutamate receptor 2; l 100.0 7E-51 2.4E-55 406.7 37.6 364 25-419 1-373 (376)
11 3mq4_A Mglur7, metabotropic gl 100.0 2.3E-52 8E-57 429.9 27.2 369 22-412 12-467 (481)
12 1jdp_A NPR-C, atrial natriuret 100.0 6.4E-50 2.2E-54 409.0 42.9 363 23-416 6-397 (441)
13 1dp4_A Atrial natriuretic pept 100.0 1.6E-49 5.5E-54 405.7 39.0 360 25-415 1-398 (435)
14 3saj_A Glutamate receptor 1; r 100.0 2E-49 6.9E-54 397.5 37.8 363 22-420 6-377 (384)
15 3qek_A NMDA glutamate receptor 100.0 8.9E-50 3.1E-54 400.4 34.7 338 23-413 2-369 (384)
16 3qel_B Glutamate [NMDA] recept 100.0 7.4E-44 2.5E-48 352.3 28.7 341 24-420 2-357 (364)
17 3i45_A Twin-arginine transloca 100.0 1.4E-39 4.6E-44 326.9 34.9 355 23-419 2-365 (387)
18 3h5l_A Putative branched-chain 100.0 1.1E-39 3.9E-44 330.9 30.7 331 21-389 9-361 (419)
19 3ipc_A ABC transporter, substr 100.0 8.5E-39 2.9E-43 317.4 32.0 345 25-414 1-352 (356)
20 4f06_A Extracellular ligand-bi 100.0 2.1E-38 7.1E-43 316.0 31.7 337 23-400 2-346 (371)
21 3td9_A Branched chain amino ac 100.0 8.9E-38 3.1E-42 311.3 32.2 342 22-414 12-363 (366)
22 1usg_A Leucine-specific bindin 100.0 1.7E-37 5.9E-42 306.8 32.9 340 25-408 1-345 (346)
23 3hut_A Putative branched-chain 100.0 3.9E-37 1.3E-41 305.7 34.0 344 24-413 2-353 (358)
24 3i09_A Periplasmic branched-ch 100.0 4.5E-37 1.5E-41 307.2 34.0 333 24-402 2-341 (375)
25 3eaf_A ABC transporter, substr 100.0 6E-37 2.1E-41 307.9 31.9 350 24-414 2-372 (391)
26 4evq_A Putative ABC transporte 100.0 1.1E-36 3.9E-41 304.4 33.1 346 22-414 12-364 (375)
27 3n0w_A ABC branched chain amin 100.0 8E-37 2.7E-41 305.8 32.0 334 23-402 3-345 (379)
28 3lkb_A Probable branched-chain 100.0 2.9E-37 1E-41 310.5 28.7 352 23-417 4-378 (392)
29 4gnr_A ABC transporter substra 100.0 1.1E-36 3.8E-41 301.7 32.3 337 22-409 3-349 (353)
30 3lop_A Substrate binding perip 100.0 8.6E-37 2.9E-41 303.9 30.5 344 23-409 2-358 (364)
31 3n0x_A Possible substrate bind 100.0 3.7E-37 1.3E-41 307.5 27.0 332 24-402 2-347 (374)
32 4eyg_A Twin-arginine transloca 100.0 4.1E-36 1.4E-40 299.5 32.0 347 23-413 3-359 (368)
33 3sg0_A Extracellular ligand-bi 100.0 7.7E-35 2.6E-39 292.3 23.9 343 22-407 23-384 (386)
34 1pea_A Amidase operon; gene re 100.0 3.6E-33 1.2E-37 279.8 35.9 348 23-411 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 3.2E-33 1.1E-37 277.9 26.3 340 23-407 4-360 (362)
36 2h4a_A YRAM (HI1655); perplasm 99.9 3.5E-26 1.2E-30 220.8 21.7 307 28-408 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 3E-26 1E-30 223.7 20.7 313 27-411 3-322 (327)
38 1pb7_A N-methyl-D-aspartate re 99.1 3.2E-11 1.1E-15 115.0 5.7 82 462-548 41-132 (292)
39 2rc8_A Glutamate [NMDA] recept 99.1 3.8E-11 1.3E-15 114.7 3.7 61 486-548 67-131 (294)
40 2a5s_A N-methyl-D-aspartate re 99.0 1.7E-10 5.8E-15 109.5 5.1 87 460-548 27-120 (284)
41 4gvo_A LMO2349 protein; struct 98.9 5.2E-10 1.8E-14 103.5 5.2 76 461-548 8-84 (243)
42 3g3k_A Glutamate receptor, ion 98.9 1.3E-09 4.5E-14 101.8 6.6 83 461-548 3-97 (259)
43 4h5g_A Amino acid ABC superfam 98.9 1.9E-09 6.6E-14 99.7 5.7 77 461-548 11-89 (243)
44 2v3u_A Glutamate receptor delt 98.8 4.9E-09 1.7E-13 98.2 5.9 83 461-548 2-93 (265)
45 1yae_A Glutamate receptor, ion 98.8 4.5E-09 1.6E-13 101.1 5.7 84 460-548 11-106 (312)
46 1mqi_A Glutamate receptor 2; G 98.7 9.9E-09 3.4E-13 96.0 6.6 83 461-548 3-97 (263)
47 3i6v_A Periplasmic His/Glu/Gln 98.7 1.5E-08 5.2E-13 92.8 5.7 76 461-548 4-79 (232)
48 3kbr_A Cyclohexadienyl dehydra 98.5 6.9E-08 2.4E-12 88.7 5.7 76 461-548 14-89 (239)
49 3kzg_A Arginine 3RD transport 98.5 9.6E-08 3.3E-12 87.6 6.1 76 462-548 3-78 (237)
50 3k4u_A Binding component of AB 98.5 1.3E-07 4.4E-12 87.3 6.0 76 461-548 4-79 (245)
51 3tql_A Arginine-binding protei 98.5 2E-07 6.8E-12 84.6 7.0 75 462-548 2-76 (227)
52 1lst_A Lysine, arginine, ornit 98.4 1.8E-07 6.1E-12 85.8 5.9 76 461-548 3-78 (239)
53 3del_B Arginine binding protei 98.4 1.9E-07 6.4E-12 85.9 5.7 76 461-548 10-85 (242)
54 3hv1_A Polar amino acid ABC up 98.4 2.1E-07 7E-12 87.2 5.9 76 461-548 20-95 (268)
55 2iee_A ORF2, probable ABC tran 98.4 2.4E-07 8.3E-12 86.9 6.0 77 461-548 20-98 (271)
56 4f3p_A Glutamine-binding perip 98.4 2.4E-07 8.2E-12 85.7 5.9 76 460-548 22-97 (249)
57 4dz1_A DALS D-alanine transpor 98.4 3.4E-07 1.2E-11 85.3 6.7 76 461-548 28-103 (259)
58 3brq_A HTH-type transcriptiona 98.4 1.5E-05 5.1E-10 75.6 18.2 213 22-254 15-236 (296)
59 4eq9_A ABC transporter substra 98.4 1.7E-07 5.9E-12 86.3 4.4 75 461-548 7-82 (246)
60 3ksm_A ABC-type sugar transpor 98.4 2.5E-05 8.7E-10 73.1 19.2 209 27-254 1-221 (276)
61 2h3h_A Sugar ABC transporter, 98.3 5E-05 1.7E-09 72.6 20.6 208 27-254 2-216 (313)
62 1wdn_A GLNBP, glutamine bindin 98.3 5.7E-07 2E-11 81.5 6.2 74 462-548 3-76 (226)
63 2y7i_A STM4351; arginine-bindi 98.3 8.4E-07 2.9E-11 80.6 6.6 76 461-548 5-80 (229)
64 1ii5_A SLR1257 protein; membra 98.3 9.8E-07 3.3E-11 80.4 6.7 77 461-548 3-80 (233)
65 1dbq_A Purine repressor; trans 98.2 6.8E-05 2.3E-09 70.7 19.1 205 24-247 5-215 (289)
66 3mpk_A Virulence sensor protei 98.2 1.1E-06 3.8E-11 82.2 6.3 76 461-548 31-106 (267)
67 3d02_A Putative LACI-type tran 98.2 0.00018 6.2E-09 68.2 22.0 210 25-253 3-222 (303)
68 3brs_A Periplasmic binding pro 98.2 0.0001 3.5E-09 69.4 20.0 211 25-254 4-224 (289)
69 2rjo_A Twin-arginine transloca 98.2 0.00018 6.2E-09 69.4 21.8 206 24-244 3-222 (332)
70 2qh8_A Uncharacterized protein 98.2 0.0001 3.4E-09 70.1 19.5 189 24-228 6-203 (302)
71 3h7m_A Sensor protein; histidi 98.2 1.7E-06 5.9E-11 78.8 6.2 75 461-548 10-84 (234)
72 2qu7_A Putative transcriptiona 98.1 2.3E-05 7.8E-10 74.0 13.1 207 23-251 5-219 (288)
73 3gbv_A Putative LACI-family tr 98.1 0.00011 3.6E-09 69.9 17.8 212 23-254 5-232 (304)
74 2q88_A EHUB, putative ABC tran 98.1 2.5E-06 8.5E-11 79.1 6.0 76 461-548 12-87 (257)
75 3rot_A ABC sugar transporter, 98.1 0.00016 5.6E-09 68.4 18.7 204 26-245 3-214 (297)
76 2pvu_A ARTJ; basic amino acid 98.1 2.8E-06 9.4E-11 79.6 6.1 75 461-548 41-115 (272)
77 3l49_A ABC sugar (ribose) tran 98.1 0.00021 7.3E-09 67.3 19.4 209 25-254 4-224 (291)
78 3c3k_A Alanine racemase; struc 98.1 0.00027 9.2E-09 66.4 19.9 205 23-251 5-216 (285)
79 2pyy_A Ionotropic glutamate re 98.1 2E-06 6.9E-11 77.9 4.9 74 462-548 3-76 (228)
80 2fn9_A Ribose ABC transporter, 98.1 0.00032 1.1E-08 66.0 20.4 197 27-243 3-215 (290)
81 2x7x_A Sensor protein; transfe 98.1 0.00032 1.1E-08 67.3 20.5 211 24-254 4-222 (325)
82 3lkv_A Uncharacterized conserv 98.1 0.00042 1.4E-08 65.7 20.9 191 22-228 4-203 (302)
83 2fep_A Catabolite control prot 98.1 0.00021 7.1E-09 67.4 18.8 212 23-254 13-231 (289)
84 1tjy_A Sugar transport protein 98.1 0.00053 1.8E-08 65.5 21.8 206 28-254 5-222 (316)
85 3dbi_A Sugar-binding transcrip 98.1 0.0002 6.8E-09 69.3 18.7 213 23-254 58-278 (338)
86 3lft_A Uncharacterized protein 98.1 0.00045 1.5E-08 65.3 20.8 200 26-243 2-210 (295)
87 2iks_A DNA-binding transcripti 98.1 0.00034 1.2E-08 66.0 19.8 212 22-254 16-233 (293)
88 3l6u_A ABC-type sugar transpor 98.1 0.00044 1.5E-08 65.2 20.4 209 23-253 5-227 (293)
89 3d8u_A PURR transcriptional re 98.0 0.0003 1E-08 65.7 18.5 205 26-251 3-213 (275)
90 2fvy_A D-galactose-binding per 98.0 0.0005 1.7E-08 65.3 20.1 204 27-242 3-226 (309)
91 2vha_A Periplasmic binding tra 98.0 4.8E-06 1.6E-10 78.7 5.7 76 461-548 16-98 (287)
92 3o74_A Fructose transport syst 98.0 0.00036 1.2E-08 64.9 18.6 207 27-254 3-215 (272)
93 3qax_A Probable ABC transporte 98.0 4.9E-06 1.7E-10 77.5 5.4 76 461-548 30-105 (268)
94 3m9w_A D-xylose-binding peripl 98.0 0.00062 2.1E-08 64.9 20.2 200 26-244 2-213 (313)
95 2ioy_A Periplasmic sugar-bindi 98.0 0.0013 4.5E-08 61.6 21.8 205 28-254 3-216 (283)
96 1jx6_A LUXP protein; protein-l 98.0 0.00078 2.7E-08 65.1 20.8 208 23-243 40-258 (342)
97 2vk2_A YTFQ, ABC transporter p 98.0 0.00049 1.7E-08 65.4 19.0 211 26-253 2-226 (306)
98 3k4h_A Putative transcriptiona 98.0 0.00034 1.2E-08 66.0 17.5 209 23-250 5-223 (292)
99 3o1i_D Periplasmic protein TOR 97.9 0.00029 9.9E-09 66.8 17.0 206 24-244 3-218 (304)
100 2v25_A Major cell-binding fact 97.9 7.6E-06 2.6E-10 75.7 5.7 77 461-548 37-116 (259)
101 2rgy_A Transcriptional regulat 97.9 0.0003 1E-08 66.3 16.8 211 23-253 5-224 (290)
102 3g1w_A Sugar ABC transporter; 97.9 0.0013 4.3E-08 62.4 21.3 211 26-254 4-221 (305)
103 4i62_A Amino acid ABC transpor 97.9 8.9E-06 3E-10 75.8 6.0 76 462-548 39-116 (269)
104 2o20_A Catabolite control prot 97.9 0.00037 1.3E-08 67.1 17.6 209 23-251 60-271 (332)
105 8abp_A L-arabinose-binding pro 97.9 0.0008 2.7E-08 63.8 19.7 215 25-254 1-232 (306)
106 2h0a_A TTHA0807, transcription 97.9 7.4E-05 2.5E-09 69.9 12.2 203 28-252 1-213 (276)
107 3bbl_A Regulatory protein of L 97.9 0.00035 1.2E-08 65.7 16.7 209 26-254 4-224 (287)
108 2yln_A Putative ABC transporte 97.9 8.1E-06 2.8E-10 77.0 5.2 76 461-548 56-132 (283)
109 1xt8_A Putative amino-acid tra 97.9 1E-05 3.5E-10 76.6 5.8 75 462-548 44-121 (292)
110 3h75_A Periplasmic sugar-bindi 97.9 0.0021 7.2E-08 62.3 22.6 215 26-254 3-241 (350)
111 1qpz_A PURA, protein (purine n 97.9 0.001 3.6E-08 64.2 19.9 208 24-250 56-269 (340)
112 3gv0_A Transcriptional regulat 97.9 0.0013 4.5E-08 61.7 20.0 211 23-251 5-220 (288)
113 3clk_A Transcription regulator 97.9 0.00021 7E-09 67.4 14.1 205 23-247 5-213 (290)
114 3k9c_A Transcriptional regulat 97.8 0.0012 4E-08 62.1 19.0 207 22-251 8-217 (289)
115 3egc_A Putative ribose operon 97.8 0.00024 8.3E-09 66.9 14.1 209 23-251 5-218 (291)
116 2yjp_A Putative ABC transporte 97.8 1.3E-05 4.4E-10 75.9 4.9 75 462-548 55-132 (291)
117 2hsg_A Glucose-resistance amyl 97.8 0.00028 9.6E-09 68.0 14.0 204 23-246 57-266 (332)
118 3jy6_A Transcriptional regulat 97.8 0.0032 1.1E-07 58.6 20.7 208 23-253 4-215 (276)
119 3gyb_A Transcriptional regulat 97.8 0.00017 6E-09 67.5 11.9 206 24-254 3-212 (280)
120 3g85_A Transcriptional regulat 97.7 0.00043 1.5E-08 65.1 14.0 208 22-251 7-220 (289)
121 3hcw_A Maltose operon transcri 97.7 0.0032 1.1E-07 59.3 20.1 212 23-251 4-224 (295)
122 3kjx_A Transcriptional regulat 97.7 0.0013 4.5E-08 63.6 17.7 210 23-252 65-280 (344)
123 3tb6_A Arabinose metabolism tr 97.7 0.00095 3.2E-08 63.0 16.1 208 26-252 15-234 (298)
124 3kke_A LACI family transcripti 97.7 0.0016 5.4E-08 61.7 17.4 210 22-253 11-232 (303)
125 3qk7_A Transcriptional regulat 97.7 0.0015 5E-08 61.6 16.7 210 24-254 4-223 (294)
126 3e3m_A Transcriptional regulat 97.7 0.0037 1.3E-07 60.7 19.8 211 23-252 67-283 (355)
127 3ctp_A Periplasmic binding pro 97.6 0.00059 2E-08 65.7 13.3 203 23-251 57-263 (330)
128 3bil_A Probable LACI-family tr 97.6 0.0037 1.3E-07 60.5 19.0 206 24-250 64-272 (348)
129 3e61_A Putative transcriptiona 97.6 0.0021 7.1E-08 59.9 16.3 202 23-252 5-210 (277)
130 3h5o_A Transcriptional regulat 97.6 0.0037 1.3E-07 60.2 18.1 207 23-251 59-271 (339)
131 2dri_A D-ribose-binding protei 97.5 0.017 5.7E-07 53.5 21.2 205 28-254 3-215 (271)
132 4fe7_A Xylose operon regulator 97.5 0.0045 1.6E-07 61.4 18.1 212 22-254 21-239 (412)
133 3cs3_A Sugar-binding transcrip 97.5 0.0093 3.2E-07 55.4 19.3 200 23-252 5-210 (277)
134 3hs3_A Ribose operon repressor 97.4 0.0025 8.5E-08 59.4 14.8 201 22-252 6-211 (277)
135 1gud_A ALBP, D-allose-binding 97.4 0.032 1.1E-06 52.1 21.7 209 28-254 3-227 (288)
136 3huu_A Transcription regulator 97.3 0.0041 1.4E-07 58.9 14.8 209 22-254 18-238 (305)
137 3jvd_A Transcriptional regulat 97.3 0.0098 3.4E-07 57.0 17.3 202 23-254 61-267 (333)
138 1byk_A Protein (trehalose oper 97.3 0.014 4.6E-07 53.5 17.5 199 27-254 3-205 (255)
139 3uug_A Multiple sugar-binding 97.3 0.013 4.5E-07 56.0 17.8 206 25-247 2-232 (330)
140 2fqx_A Membrane lipoprotein TM 97.2 0.054 1.8E-06 51.4 21.4 207 25-252 3-220 (318)
141 1jye_A Lactose operon represso 97.2 0.033 1.1E-06 53.7 19.9 206 23-252 58-271 (349)
142 3miz_A Putative transcriptiona 97.1 0.0009 3.1E-08 63.3 8.0 207 22-247 9-225 (301)
143 2hqb_A Transcriptional activat 97.0 0.14 4.9E-06 47.9 21.9 196 25-242 4-204 (296)
144 3s99_A Basic membrane lipoprot 97.0 0.11 3.7E-06 50.1 21.1 206 19-242 19-229 (356)
145 3h5t_A Transcriptional regulat 96.7 0.03 1E-06 54.4 15.1 209 23-249 65-298 (366)
146 3qi7_A Putative transcriptiona 96.0 0.3 1E-05 46.6 16.6 217 24-245 10-251 (371)
147 3ixl_A Amdase, arylmalonate de 95.9 0.24 8.4E-06 44.5 15.0 121 83-231 58-193 (240)
148 2ozz_A Hypothetical protein YH 93.4 0.014 4.9E-07 51.9 -0.1 52 484-546 27-78 (231)
149 2xed_A Putative maleate isomer 92.5 2.9 9.8E-05 38.3 14.3 117 85-229 84-219 (273)
150 2eq5_A 228AA long hypothetical 89.0 8 0.00027 34.1 13.5 165 26-230 6-186 (228)
151 2fqx_A Membrane lipoprotein TM 87.3 13 0.00045 34.7 14.5 126 28-160 131-264 (318)
152 3bfj_A 1,3-propanediol oxidore 86.7 2.9 9.8E-05 40.6 9.7 88 149-238 23-114 (387)
153 2dgd_A 223AA long hypothetical 85.9 8.6 0.00029 33.8 11.7 80 147-229 96-182 (223)
154 3p7i_A PHND, subunit of alkylp 85.5 0.76 2.6E-05 43.4 4.7 46 492-545 34-80 (321)
155 3s99_A Basic membrane lipoprot 85.4 9.3 0.00032 36.4 12.3 89 27-124 150-238 (356)
156 3n5l_A Binding protein compone 85.0 0.7 2.4E-05 43.4 4.2 62 461-540 3-64 (310)
157 3ox4_A Alcohol dehydrogenase 2 84.6 1.6 5.6E-05 42.3 6.7 90 148-239 20-111 (383)
158 2hqb_A Transcriptional activat 81.5 22 0.00074 32.7 13.0 121 27-161 127-248 (296)
159 1rrm_A Lactaldehyde reductase; 81.0 3.1 0.00011 40.4 7.1 89 149-239 21-111 (386)
160 1vlj_A NADH-dependent butanol 80.9 5.7 0.0002 38.7 9.0 87 149-237 33-122 (407)
161 2l69_A Rossmann 2X3 fold prote 78.7 16 0.00054 26.2 8.1 50 140-192 57-106 (134)
162 2l82_A Designed protein OR32; 78.6 18 0.00061 26.8 9.5 96 137-243 5-104 (162)
163 3uhj_A Probable glycerol dehyd 76.8 4 0.00014 39.5 6.4 82 149-236 43-126 (387)
164 1o2d_A Alcohol dehydrogenase, 75.4 10 0.00034 36.5 8.8 88 148-238 30-120 (371)
165 2zsk_A PH1733, 226AA long hypo 75.3 21 0.0007 31.4 10.3 75 88-191 70-144 (226)
166 1jfl_A Aspartate racemase; alp 72.1 50 0.0017 28.8 12.1 39 82-121 65-103 (228)
167 3ce9_A Glycerol dehydrogenase; 68.1 14 0.00047 35.2 7.9 96 150-255 25-122 (354)
168 1mkz_A Molybdenum cofactor bio 67.3 29 0.00098 28.9 8.8 64 160-227 11-78 (172)
169 3r7f_A Aspartate carbamoyltran 66.5 38 0.0013 31.2 10.1 135 27-193 37-179 (304)
170 2gzm_A Glutamate racemase; enz 66.2 40 0.0014 30.4 10.3 36 85-120 59-94 (267)
171 1jq5_A Glycerol dehydrogenase; 66.1 14 0.00048 35.4 7.5 82 150-236 23-106 (370)
172 4dik_A Flavoprotein; TM0755, e 64.9 45 0.0015 32.3 10.9 92 160-258 266-365 (410)
173 3m9w_A D-xylose-binding peripl 64.6 27 0.00093 32.1 9.2 79 160-243 3-84 (313)
174 2oho_A Glutamate racemase; iso 63.0 29 0.00098 31.5 8.6 35 86-120 69-103 (273)
175 3hl0_A Maleylacetate reductase 62.4 16 0.00055 34.7 7.0 82 148-235 23-106 (353)
176 3p6l_A Sugar phosphate isomera 61.2 47 0.0016 29.5 9.9 93 148-243 25-129 (262)
177 3g1w_A Sugar ABC transporter; 60.9 22 0.00076 32.5 7.8 80 160-243 5-87 (305)
178 3l49_A ABC sugar (ribose) tran 59.1 36 0.0012 30.7 8.9 80 160-244 6-88 (291)
179 3jzd_A Iron-containing alcohol 58.7 15 0.0005 35.1 6.0 83 148-236 25-109 (358)
180 2dwu_A Glutamate racemase; iso 58.7 98 0.0034 27.9 11.5 36 85-120 63-98 (276)
181 3gbv_A Putative LACI-family tr 58.4 32 0.0011 31.2 8.4 84 158-243 7-95 (304)
182 2q5c_A NTRC family transcripti 58.3 86 0.0029 26.6 15.1 159 26-244 4-162 (196)
183 1ccw_A Protein (glutamate muta 57.0 71 0.0024 25.2 9.3 85 161-254 5-93 (137)
184 3dbi_A Sugar-binding transcrip 56.4 43 0.0015 31.2 9.0 85 154-243 56-144 (338)
185 3jy6_A Transcriptional regulat 55.9 43 0.0015 30.0 8.7 78 159-243 7-86 (276)
186 4a8p_A Putrescine carbamoyltra 55.9 1.4E+02 0.0047 28.2 14.5 134 26-193 41-183 (355)
187 4a8t_A Putrescine carbamoyltra 55.7 1.3E+02 0.0046 28.0 13.6 133 26-193 63-205 (339)
188 1nrz_A PTS system, sorbose-spe 55.6 32 0.0011 28.4 6.8 80 146-235 14-93 (164)
189 3ist_A Glutamate racemase; str 54.2 69 0.0023 28.9 9.5 36 85-120 61-96 (269)
190 3k9c_A Transcriptional regulat 54.1 1.2E+02 0.0042 27.1 12.1 121 25-156 125-253 (289)
191 2jfq_A Glutamate racemase; cel 54.0 95 0.0033 28.2 10.6 36 86-121 79-114 (286)
192 3h75_A Periplasmic sugar-bindi 53.6 37 0.0013 31.8 8.1 80 159-243 3-87 (350)
193 3gd5_A Otcase, ornithine carba 53.4 1.4E+02 0.0048 27.7 14.1 133 27-193 49-187 (323)
194 2yxb_A Coenzyme B12-dependent 53.3 91 0.0031 25.4 10.5 86 160-254 19-108 (161)
195 3tb6_A Arabinose metabolism tr 52.7 59 0.002 29.3 9.2 79 160-243 16-100 (298)
196 1vsq_C Mannose-specific phosph 52.6 33 0.0011 28.4 6.4 80 146-235 17-96 (165)
197 2bon_A Lipid kinase; DAG kinas 51.9 55 0.0019 30.6 8.8 94 136-241 12-105 (332)
198 2pjk_A 178AA long hypothetical 51.6 68 0.0023 26.8 8.4 67 157-227 13-90 (178)
199 1y5e_A Molybdenum cofactor bio 50.9 78 0.0027 26.1 8.7 66 158-227 12-81 (169)
200 3lmz_A Putative sugar isomeras 50.6 62 0.0021 28.7 8.7 94 147-243 32-127 (257)
201 3dmy_A Protein FDRA; predicted 49.7 2E+02 0.0069 28.4 14.2 145 76-242 45-198 (480)
202 8abp_A L-arabinose-binding pro 49.6 61 0.0021 29.4 8.8 77 161-243 4-83 (306)
203 1b73_A Glutamate racemase; iso 49.5 87 0.003 27.9 9.4 117 83-228 54-180 (254)
204 3rfq_A Pterin-4-alpha-carbinol 48.9 54 0.0018 27.7 7.3 64 160-227 31-98 (185)
205 3ojc_A Putative aspartate/glut 48.9 15 0.00052 32.4 4.1 77 86-191 71-148 (231)
206 3o74_A Fructose transport syst 48.6 28 0.00097 31.0 6.1 79 160-243 3-83 (272)
207 2is8_A Molybdopterin biosynthe 48.4 63 0.0022 26.5 7.7 63 161-227 3-71 (164)
208 1i4n_A Indole-3-glycerol phosp 47.7 1E+02 0.0036 27.3 9.4 84 150-244 66-152 (251)
209 3tsm_A IGPS, indole-3-glycerol 47.6 1.6E+02 0.0054 26.5 10.6 87 148-244 82-171 (272)
210 3ix1_A N-formyl-4-amino-5-amin 47.5 7 0.00024 36.1 1.7 47 486-540 16-62 (302)
211 3l6u_A ABC-type sugar transpor 47.0 56 0.0019 29.4 8.0 80 159-243 8-90 (293)
212 4ekn_B Aspartate carbamoyltran 46.8 1.3E+02 0.0044 27.7 10.1 135 26-193 40-184 (306)
213 2jfn_A Glutamate racemase; cel 46.5 1.1E+02 0.0039 27.7 9.8 35 87-121 79-114 (285)
214 3uug_A Multiple sugar-binding 46.3 65 0.0022 29.6 8.5 79 160-243 4-85 (330)
215 4f2g_A Otcase 1, ornithine car 46.2 1.3E+02 0.0044 27.7 10.0 132 27-193 46-184 (309)
216 3sr0_A Adenylate kinase; phosp 45.3 13 0.00046 32.1 3.1 31 92-122 2-32 (206)
217 1y80_A Predicted cobalamin bin 45.3 1.3E+02 0.0045 25.7 9.6 86 160-253 89-178 (210)
218 3ksm_A ABC-type sugar transpor 44.9 41 0.0014 29.9 6.6 80 161-243 2-85 (276)
219 1ta9_A Glycerol dehydrogenase; 44.7 35 0.0012 33.6 6.3 96 149-254 81-178 (450)
220 3k4h_A Putative transcriptiona 44.6 52 0.0018 29.6 7.3 80 158-243 7-93 (292)
221 1oj7_A Hypothetical oxidoreduc 44.1 32 0.0011 33.3 6.0 83 150-238 43-128 (408)
222 3ezx_A MMCP 1, monomethylamine 43.9 1.5E+02 0.0051 25.6 9.7 87 160-254 93-185 (215)
223 3d02_A Putative LACI-type tran 43.9 73 0.0025 28.8 8.3 80 160-243 5-87 (303)
224 3umf_A Adenylate kinase; rossm 43.8 12 0.00039 32.8 2.4 31 91-121 30-60 (217)
225 3eye_A PTS system N-acetylgala 43.6 36 0.0012 28.2 5.3 80 146-236 19-99 (168)
226 1tjy_A Sugar transport protein 43.5 39 0.0013 31.2 6.3 80 160-243 4-86 (316)
227 1jx6_A LUXP protein; protein-l 43.4 59 0.002 30.2 7.7 82 160-243 44-129 (342)
228 2fvy_A D-galactose-binding per 43.1 82 0.0028 28.5 8.6 79 160-243 3-85 (309)
229 2fn9_A Ribose ABC transporter, 43.0 74 0.0025 28.5 8.1 79 160-243 3-84 (290)
230 2g2c_A Putative molybdenum cof 42.3 89 0.003 25.7 7.7 63 161-227 7-78 (167)
231 3iwt_A 178AA long hypothetical 42.1 71 0.0024 26.6 7.2 49 175-227 41-90 (178)
232 1ble_A Fructose permease; phos 42.1 31 0.0011 28.5 4.6 80 146-235 15-94 (163)
233 3rot_A ABC sugar transporter, 41.8 46 0.0016 30.2 6.5 82 160-244 4-88 (297)
234 4h31_A Otcase, ornithine carba 41.7 2.3E+02 0.0078 26.7 12.6 133 28-193 72-212 (358)
235 3lfj_A Manxb, phosphotransfera 41.7 30 0.001 29.3 4.5 81 146-236 35-115 (187)
236 3huu_A Transcription regulator 41.6 46 0.0016 30.4 6.5 84 154-243 17-107 (305)
237 3uhf_A Glutamate racemase; str 41.3 2E+02 0.0068 25.9 10.7 59 61-120 47-115 (274)
238 3h5o_A Transcriptional regulat 40.7 1E+02 0.0035 28.5 8.9 83 155-243 58-142 (339)
239 1js1_X Transcarbamylase; alpha 40.5 2.3E+02 0.0077 26.3 11.7 136 26-193 36-202 (324)
240 3pzy_A MOG; ssgcid, seattle st 40.3 64 0.0022 26.5 6.4 63 160-227 8-75 (164)
241 4amu_A Ornithine carbamoyltran 40.2 2.3E+02 0.0078 26.8 10.8 134 26-193 71-211 (365)
242 3gyb_A Transcriptional regulat 39.5 72 0.0025 28.4 7.4 120 25-156 117-244 (280)
243 3brq_A HTH-type transcriptiona 39.4 1.2E+02 0.0041 27.1 9.0 80 158-243 18-102 (296)
244 2fep_A Catabolite control prot 39.2 90 0.0031 28.0 8.0 78 160-243 17-96 (289)
245 1jye_A Lactose operon represso 38.9 97 0.0033 28.9 8.4 65 158-226 60-126 (349)
246 3dnf_A ISPH, LYTB, 4-hydroxy-3 38.7 89 0.0031 28.5 7.5 54 68-121 186-241 (297)
247 3i42_A Response regulator rece 38.5 1.2E+02 0.0042 22.6 8.7 66 161-241 5-72 (127)
248 2ef0_A Ornithine carbamoyltran 38.0 2.4E+02 0.0081 25.8 11.8 133 26-193 45-184 (301)
249 3lte_A Response regulator; str 37.5 1.3E+02 0.0044 22.6 8.3 68 160-242 7-76 (132)
250 4es6_A Uroporphyrinogen-III sy 37.4 33 0.0011 30.6 4.6 85 146-239 115-205 (254)
251 2h3h_A Sugar ABC transporter, 37.3 81 0.0028 28.7 7.5 79 161-243 3-83 (313)
252 4ddd_A Immunogenic protein; ss 37.3 31 0.0011 32.2 4.6 50 485-542 43-96 (327)
253 1dxh_A Ornithine carbamoyltran 37.3 2.6E+02 0.0089 26.0 12.8 134 26-193 45-186 (335)
254 3s81_A Putative aspartate race 36.5 1.6E+02 0.0056 26.4 9.0 40 81-121 89-128 (268)
255 2lci_A Protein OR36; structura 36.4 91 0.0031 22.3 5.6 46 143-191 60-105 (134)
256 3qk7_A Transcriptional regulat 36.4 73 0.0025 28.8 6.9 78 159-243 6-89 (294)
257 3kbq_A Protein TA0487; structu 36.2 95 0.0033 25.7 6.8 61 161-226 5-70 (172)
258 3kke_A LACI family transcripti 36.1 81 0.0028 28.6 7.3 84 154-243 10-95 (303)
259 1duv_G Octase-1, ornithine tra 36.1 2.7E+02 0.0092 25.9 14.2 134 26-193 44-186 (333)
260 1ml4_A Aspartate transcarbamoy 35.9 2.6E+02 0.0089 25.7 10.9 135 27-193 45-187 (308)
261 3e61_A Putative transcriptiona 35.7 89 0.003 27.7 7.4 76 160-243 9-87 (277)
262 3e3m_A Transcriptional regulat 35.5 1.2E+02 0.0042 28.2 8.6 83 155-243 66-150 (355)
263 1zuw_A Glutamate racemase 1; ( 35.4 2.4E+02 0.0084 25.2 12.8 41 81-121 55-96 (272)
264 2l69_A Rossmann 2X3 fold prote 35.1 1.2E+02 0.0042 21.7 8.5 100 133-242 25-125 (134)
265 2qh8_A Uncharacterized protein 34.2 1.6E+02 0.0055 26.6 9.0 115 25-156 139-256 (302)
266 2dri_A D-ribose-binding protei 33.9 1.2E+02 0.0042 26.7 8.0 79 160-243 2-83 (271)
267 2x7x_A Sensor protein; transfe 33.9 1.7E+02 0.0059 26.6 9.3 80 159-243 6-88 (325)
268 2qv7_A Diacylglycerol kinase D 33.9 2.1E+02 0.0073 26.5 9.8 76 159-240 24-102 (337)
269 3kjx_A Transcriptional regulat 33.8 1.7E+02 0.0059 26.9 9.3 78 160-243 69-148 (344)
270 3lvu_A ABC transporter, peripl 33.5 54 0.0018 29.1 5.4 41 493-542 146-186 (258)
271 3gv0_A Transcriptional regulat 33.1 96 0.0033 27.8 7.2 80 158-243 7-90 (288)
272 3hs3_A Ribose operon repressor 32.7 1.1E+02 0.0038 27.2 7.5 68 154-226 5-75 (277)
273 3iv7_A Alcohol dehydrogenase I 32.6 39 0.0013 32.2 4.4 80 148-235 26-107 (364)
274 2iks_A DNA-binding transcripti 32.5 59 0.002 29.3 5.6 83 155-242 16-100 (293)
275 3rf7_A Iron-containing alcohol 32.0 1E+02 0.0036 29.3 7.2 83 149-237 40-130 (375)
276 3p3v_A PTS system, N-acetylgal 31.6 52 0.0018 27.1 4.4 79 146-236 18-96 (163)
277 3egc_A Putative ribose operon 31.4 60 0.0021 29.2 5.4 79 158-242 7-87 (291)
278 2ioy_A Periplasmic sugar-bindi 31.4 1.4E+02 0.0047 26.6 7.9 78 161-243 3-83 (283)
279 3grc_A Sensor protein, kinase; 31.3 1.6E+02 0.0054 22.5 7.4 66 160-240 7-74 (140)
280 3hcw_A Maltose operon transcri 31.2 83 0.0028 28.4 6.4 78 160-243 8-92 (295)
281 2rjo_A Twin-arginine transloca 31.2 1.2E+02 0.004 27.9 7.6 79 160-243 6-89 (332)
282 3pam_A Transmembrane protein; 30.9 56 0.0019 29.0 5.0 41 493-542 145-185 (259)
283 3d8u_A PURR transcriptional re 30.9 1.1E+02 0.0037 27.1 7.0 78 160-243 4-83 (275)
284 3lkv_A Uncharacterized conserv 30.5 2.2E+02 0.0075 25.8 9.2 70 82-156 184-256 (302)
285 1pg5_A Aspartate carbamoyltran 30.4 2.9E+02 0.01 25.2 9.6 135 27-193 39-182 (299)
286 1pvv_A Otcase, ornithine carba 30.2 3.3E+02 0.011 25.1 15.0 135 26-194 46-186 (315)
287 3csu_A Protein (aspartate carb 29.9 3.3E+02 0.011 25.0 11.9 135 27-193 42-187 (310)
288 2o20_A Catabolite control prot 29.7 1.5E+02 0.0052 27.2 8.1 81 157-243 61-143 (332)
289 3o6p_A Peptide ABC transporter 29.7 55 0.0019 28.4 4.7 41 493-542 116-158 (229)
290 1vlv_A Otcase, ornithine carba 29.5 3.4E+02 0.012 25.1 13.5 134 26-193 58-198 (325)
291 3uif_A Sulfonate ABC transport 29.2 26 0.0009 32.9 2.6 42 494-541 35-76 (348)
292 1jlj_A Gephyrin; globular alph 29.1 1.8E+02 0.0063 24.4 7.6 67 157-227 12-87 (189)
293 1sg6_A Pentafunctional AROM po 29.1 2.2E+02 0.0074 27.2 9.1 96 154-254 31-140 (393)
294 3okf_A 3-dehydroquinate syntha 28.6 1.9E+02 0.0065 27.7 8.4 97 153-254 56-158 (390)
295 3qvl_A Putative hydantoin race 28.5 3E+02 0.01 24.1 13.6 85 27-121 2-97 (245)
296 3l4e_A Uncharacterized peptida 28.2 1.4E+02 0.0049 25.4 6.9 71 147-226 15-87 (206)
297 4a29_A Engineered retro-aldol 28.2 2.7E+02 0.0091 24.8 8.5 84 150-244 69-155 (258)
298 2rgy_A Transcriptional regulat 28.1 1.1E+02 0.0036 27.5 6.5 79 159-243 8-91 (290)
299 1xrs_B D-lysine 5,6-aminomutas 27.9 2.5E+02 0.0087 25.0 8.6 87 160-254 121-223 (262)
300 3c3k_A Alanine racemase; struc 27.8 2.3E+02 0.0078 25.1 8.8 77 159-242 8-86 (285)
301 2pln_A HP1043, response regula 27.4 1.7E+02 0.006 22.1 7.0 54 175-241 30-83 (137)
302 2vk2_A YTFQ, ABC transporter p 27.0 1.2E+02 0.0041 27.4 6.7 79 160-243 3-84 (306)
303 2fp4_A Succinyl-COA ligase [GD 26.9 3.6E+02 0.012 24.6 14.8 144 76-240 80-234 (305)
304 1zbm_A Hypothetical protein AF 26.8 24 0.00083 31.8 1.8 29 503-540 37-65 (280)
305 1ou0_A Precorrin-8X methylmuta 26.4 98 0.0034 26.5 5.2 68 42-122 115-186 (207)
306 2x26_A Periplasmic aliphatic s 26.3 45 0.0016 30.4 3.6 36 498-542 25-62 (308)
307 3bil_A Probable LACI-family tr 26.1 1.5E+02 0.005 27.6 7.3 78 160-243 67-146 (348)
308 3qja_A IGPS, indole-3-glycerol 26.1 2.5E+02 0.0087 25.1 8.4 87 148-244 75-164 (272)
309 3bbl_A Regulatory protein of L 25.8 1.2E+02 0.0042 27.0 6.5 78 160-243 5-88 (287)
310 2i6u_A Otcase, ornithine carba 25.6 3.9E+02 0.013 24.4 13.8 136 26-194 39-180 (307)
311 3un6_A Hypothetical protein sa 25.4 27 0.00093 32.7 1.9 35 500-542 78-112 (341)
312 2yv1_A Succinyl-COA ligase [AD 25.2 3.4E+02 0.012 24.6 9.2 133 75-228 78-215 (294)
313 3cf4_G Acetyl-COA decarboxylas 25.0 95 0.0032 25.6 5.0 41 81-121 24-68 (170)
314 4f2d_A L-arabinose isomerase; 25.0 1.4E+02 0.0048 29.7 7.0 116 45-166 29-148 (500)
315 4dz1_A DALS D-alanine transpor 24.8 1.8E+02 0.006 25.4 7.3 54 158-227 136-193 (259)
316 3lhk_A Putative DNA binding pr 24.6 1E+02 0.0035 24.9 5.0 46 492-539 24-72 (154)
317 2j48_A Two-component sensor ki 24.3 2E+02 0.0068 20.6 7.6 57 175-242 13-71 (119)
318 1uuy_A CNX1, molybdopterin bio 24.1 2.9E+02 0.0099 22.4 8.3 64 160-227 6-80 (167)
319 2i2x_B MTAC, methyltransferase 24.0 3.7E+02 0.013 23.7 10.9 84 160-254 124-212 (258)
320 2pbq_A Molybdenum cofactor bio 24.0 2.9E+02 0.0098 22.8 7.9 62 161-227 7-77 (178)
321 3miz_A Putative transcriptiona 23.9 2.9E+02 0.01 24.6 8.8 70 154-228 8-80 (301)
322 3clk_A Transcription regulator 23.3 98 0.0033 27.7 5.3 77 160-242 9-88 (290)
323 3eod_A Protein HNR; response r 22.6 2.4E+02 0.0082 20.9 7.9 69 159-242 7-77 (130)
324 1f2v_A COBH, precorrin-8X meth 22.6 1.3E+02 0.0044 26.0 5.3 47 75-121 145-197 (219)
325 2w37_A Ornithine carbamoyltran 22.6 4.8E+02 0.017 24.5 12.5 134 26-193 67-207 (359)
326 1vc4_A Indole-3-glycerol phosp 22.4 3.3E+02 0.011 24.1 8.3 87 148-244 68-156 (254)
327 2hsg_A Glucose-resistance amyl 22.0 1.7E+02 0.0057 26.8 6.8 78 159-242 60-139 (332)
328 3qsl_A Putative exported prote 21.9 42 0.0014 31.2 2.4 36 499-542 59-94 (346)
329 1ytl_A Acetyl-COA decarboxylas 21.9 1.2E+02 0.004 25.3 4.9 38 82-121 25-67 (174)
330 2pju_A Propionate catabolism o 21.8 2.5E+02 0.0086 24.3 7.3 135 66-244 39-174 (225)
331 1di6_A MOGA, molybdenum cofact 21.7 2.7E+02 0.0091 23.5 7.2 63 161-227 5-75 (195)
332 1xah_A Sadhqs, 3-dehydroquinat 21.7 1.2E+02 0.0041 28.5 5.6 96 150-254 24-125 (354)
333 1dbq_A Purine repressor; trans 21.5 2.2E+02 0.0076 25.1 7.4 63 160-227 8-72 (289)
334 3o6p_A Peptide ABC transporter 21.1 1.5E+02 0.0052 25.4 5.9 44 151-194 84-135 (229)
335 3s40_A Diacylglycerol kinase; 21.0 4.4E+02 0.015 23.8 9.3 74 159-240 8-85 (304)
336 2rb4_A ATP-dependent RNA helic 20.8 3.3E+02 0.011 21.9 8.5 76 139-223 14-89 (175)
337 1pq4_A Periplasmic binding pro 20.7 1.8E+02 0.0061 26.4 6.4 42 183-226 204-245 (291)
338 3o1i_D Periplasmic protein TOR 20.6 1.1E+02 0.0036 27.6 4.9 80 160-243 6-88 (304)
339 3d6n_B Aspartate carbamoyltran 20.6 3.3E+02 0.011 24.7 7.9 130 31-193 39-178 (291)
340 1gud_A ALBP, D-allose-binding 20.4 2.5E+02 0.0084 24.9 7.4 81 160-243 2-85 (288)
341 3hv2_A Response regulator/HD d 20.3 3E+02 0.01 21.2 8.3 67 161-242 16-84 (153)
342 3zy2_A Putative GDP-fucose pro 20.2 4.4E+02 0.015 24.6 8.6 90 138-242 259-348 (362)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=2.3e-60 Score=524.19 Aligned_cols=459 Identities=18% Similarity=0.289 Sum_probs=384.7
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
++|+||+++|++.. ..+.|+++|+++||+++ ++|+++++|+++ ++..+++.+|++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 47999999999864 78999999999999986 799999999998 8999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.+++++++.+++|+|++ +.+.. ..++|+||+.|+ ++.++++++++|||++|++|| |+++|....+.+.+.+
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33322 357899999998 889999999999999999999 7788999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|+||+....++........++..++++|+++++++|++++....+..++++|+++||..++|+||.++.+....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877643112367888999999999999999999999999999999999999999999999865433322
Q ss_pred CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
........|++++..+.++.+.+++|.++|+++++.. ..++.+++++||||+++|+|++++..++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1223445678888888888999999999999887532 235677999999999999999999876543221
Q ss_pred cCCccccCCCCCccccCCc--cccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCC
Q 008904 338 SNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~ 415 (549)
...+..|... .+|.++..|.++|++++|+|++|++.||++|++....|+|++++++++ ++||.|++..
T Consensus 300 ---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~-~~vg~w~~~~ 369 (823)
T 3kg2_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (823)
T ss_dssp ---------SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCE-EEEEEEETTT
T ss_pred ---------CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCC-eeEEEEcCCC
Confidence 1223467654 567789999999999999999999999999999889999999998888 8999999987
Q ss_pred CCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCccccccCCCCeEEEeecCcccccccEEe---ecCcceeeeeeH
Q 008904 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFK---VNGTDIVHGYCI 492 (549)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~G~~i 492 (549)
|+..... .. ....+++++|++...+||..+... ..++++++|||+
T Consensus 370 g~~~~~~------------------------------~~--~~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~ 417 (823)
T 3kg2_A 370 KMVLTED------------------------------DT--SGLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYCV 417 (823)
T ss_dssp EEEECCC------------------------------CC--SSCCCCCEEEEECCCTTTSEECTTGGGCCGGGGEESHHH
T ss_pred CceeccC------------------------------cc--cccCCCEEEEEEecCCCcEEEecCccccCCCCceEEEHH
Confidence 6543210 00 011368899998765555432110 136789999999
Q ss_pred HHHHHHHHhCCCCcCEEEEECCCCC------CCCChHHHHHhHhcCcccEEecceEEeeccc
Q 008904 493 DVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~dg~------~~g~~~gl~~~l~~~~~d~~~~~~ti~~~r~ 548 (549)
||++++++.|||+ |+++.++||+ .+|+|+||+++|.+|++|+++++++||++|+
T Consensus 418 dl~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~ 477 (823)
T 3kg2_A 418 DLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVRE 477 (823)
T ss_dssp HHHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHH
T ss_pred HHHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhhe
Confidence 9999999999999 9999999876 4688999999999999999999999999996
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1e-53 Score=428.60 Aligned_cols=369 Identities=17% Similarity=0.256 Sum_probs=315.9
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCC-CCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRV-LGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~i-l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.+++|+||+++|++.. ..+.|+++|+++||+++++ |+|++|+++++|+++ ++..+++.+|++++++|.+||||.+
T Consensus 2 ~~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~ 78 (389)
T 3o21_A 2 FPNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYD 78 (389)
T ss_dssp CCSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCC
T ss_pred CCceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCC
Confidence 4689999999999864 7899999999999999999 699999999999987 9999999999999999999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
|..+.+++++++.++||+|+++. +.++ ..+|.||+.|+ ++.++++++++|+|++|++|| |++||...++.|.
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~ 150 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred hhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHH
Confidence 99999999999999999998743 4332 34567788886 899999999999999999999 7799999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+||+..+.++.. ...++..+|.+|+++++++||+++....+..++++++++||..++|+||+++.+....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~ 227 (389)
T 3o21_A 151 EAAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDI 227 (389)
T ss_dssp HHHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGC
T ss_pred HHhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccc
Confidence 9999999999988766532 3458999999999999999999999999999999999999999999999988665443
Q ss_pred CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
+. ........|++++....++.|.+++|.++|+++++.. ..+..+++++||||+++|+|++++..++..
T Consensus 228 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~ 302 (389)
T 3o21_A 228 LL-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVD 302 (389)
T ss_dssp CC-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 32 2334456788888888888999999999999887532 134678999999999999999999865433
Q ss_pred ccccCCccccCCCCCcccc--CCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEee
Q 008904 335 ISFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~ 412 (549)
... .+...+| ....+|.+|..|.++|++++|+|++|+|.||++|+|....|+|+++.++++ ++||.|+
T Consensus 303 ~~~---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~ 372 (389)
T 3o21_A 303 VSR---------RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGS-RKAGYWN 372 (389)
T ss_dssp CC--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred ccc---------CCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCc-eeeeEEc
Confidence 211 0123456 334678889999999999999999999999999999888999999998887 9999999
Q ss_pred CCCCCccc
Q 008904 413 NYSGLSVV 420 (549)
Q Consensus 413 ~~~~l~~~ 420 (549)
+..||+..
T Consensus 373 ~~~g~~~~ 380 (389)
T 3o21_A 373 EYERFVPF 380 (389)
T ss_dssp TTTEEECC
T ss_pred CCCCcccc
Confidence 99987643
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=3.9e-52 Score=418.85 Aligned_cols=371 Identities=16% Similarity=0.224 Sum_probs=314.2
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCC-CCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL-GGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il-~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.|+.|+||++||.+. ...+.|+++|+++||+++++| ++.+|.+...+++ +++..+.+.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 578999999999874 577899999999999999998 5677777776654 58889999999999999999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
|..+.+++++++.++||+|+++++.+.. .+|+ +++.|. +++++++++++|+|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~--~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFV--LQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSE--EECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCC--ccccCC---HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999976544322 2445 444454 357999999999999999999777654 5678888
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+.+.|++|.....++. ...++...|++++++++++||+.+....+..++++|+++||..++++|++++.+....
T Consensus 151 ~~~~~~g~~v~~~~~~~~----~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENF----NDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTC----CHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCC----cchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 899999999998877664 4789999999999999999999999999999999999999999999999998876654
Q ss_pred CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC-----CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCc
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG-----SIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 335 (549)
.. ........++.++....+..+.+++|.++|++.+.. ...+..+++++||||+++|+||+++.++....
T Consensus 227 ~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~ 301 (389)
T 4gpa_A 227 SL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDI 301 (389)
T ss_dssp CC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 43 455667788999999999999999999999987642 24577889999999999999999998876543
Q ss_pred cccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCC
Q 008904 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (549)
Q Consensus 336 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~ 415 (549)
... .......|....+|.+|..|.++|++++|+|+||+|.||++|+|.++.|+|+|++++++ ++||.|++..
T Consensus 302 ~~~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~-~~VG~W~~~~ 373 (389)
T 4gpa_A 302 SRR-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGP-RKVGYWNDMD 373 (389)
T ss_dssp CCT-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ccc-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEE-EEEEEEECCC
Confidence 211 12233456667789889999999999999999999999999999889999999998887 9999999999
Q ss_pred CCcccC
Q 008904 416 GLSVVP 421 (549)
Q Consensus 416 ~l~~~~ 421 (549)
||.+..
T Consensus 374 gl~~~~ 379 (389)
T 4gpa_A 374 KLVLIQ 379 (389)
T ss_dssp EEEECC
T ss_pred CeEECC
Confidence 887653
No 4
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=9.6e-53 Score=431.54 Aligned_cols=367 Identities=20% Similarity=0.313 Sum_probs=308.9
Q ss_pred CCCceEEEEEEeccC------------C-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFG------------T-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~------------~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~ 88 (549)
..+|+|.||++||++ . ..|.+...|+++|+|+||+++++|||++|+++++|+|+++..+++.+.+++
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 578999999999996 1 157788999999999999999999999999999999999999999999998
Q ss_pred hc-------------------------CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCC
Q 008904 89 ET-------------------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (549)
Q Consensus 89 ~~-------------------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps 142 (549)
++ +|+|||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999998 479999999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHH-HHHhcCCCeE
Q 008904 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEARV 221 (549)
Q Consensus 143 ~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~v 221 (549)
+..++.++++++++|||+||++|++|++||+...+.|++.+++.|+||++.+.++.. ....++...+ +.++++++++
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999999888754 3467888888 6788899999
Q ss_pred EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHH------
Q 008904 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS------ 295 (549)
Q Consensus 222 iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~------ 295 (549)
||+++....+..+++++.++|+. ++||+++.|........ .....+.|++++.++..+.|.+++|+.
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 319 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYN 319 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCc
Confidence 99999999999999999999975 89999998764311100 112467899999999999999988864
Q ss_pred ---------HHHhhcCCCC---------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccC
Q 008904 296 ---------RWNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (549)
Q Consensus 296 ---------~~~~~~~~~~---------------------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~ 345 (549)
.|+..|+|.. ........+||||+++|+|||+++.+.+..
T Consensus 320 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---------- 389 (479)
T 3sm9_A 320 NHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN---------- 389 (479)
T ss_dssp CTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC----------
Confidence 4666665321 011234679999999999999998632210
Q ss_pred CCCCccccCCccccCchHHHH-HHHHhcccccc------ce-eeEEccCCCCCCCceEEEEEee---CceeeEEeEee
Q 008904 346 LGGGTLNLGALSIFDGGKKFL-ANILQTNMTGL------SG-PIHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWS 412 (549)
Q Consensus 346 ~~~~~~~c~~~~~~~~~~~l~-~~l~~~~f~g~------tG-~v~fd~~g~r~~~~~~I~~~~~---~~~~~~VG~w~ 412 (549)
....|.....+ ++++|+ ++|++++|.+. +| .|.||++|++ ...|+|+|++. ...+++||.|+
T Consensus 390 ---~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 390 ---TTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ---CSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred ---CCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 11245433334 388999 99999999998 55 6999999996 68999999973 33569999997
No 5
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=2.8e-52 Score=429.99 Aligned_cols=391 Identities=20% Similarity=0.315 Sum_probs=315.5
Q ss_pred CCCceEEEEEEeccCCC-----------------CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGTV-----------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~ 84 (549)
..+|+|.||++||.+.. .|.+...|+.+|+||||+++++|||++|+++++|+|+++..+++.+
T Consensus 13 ~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a 92 (496)
T 3ks9_A 13 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 92 (496)
T ss_dssp EECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHH
Confidence 68999999999998731 2467789999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------------hcCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCC
Q 008904 85 LQFM-----------------------------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYP 134 (549)
Q Consensus 85 ~~l~-----------------------------~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~ 134 (549)
.+++ +++|.|||||.+|..+.+++++++.+++|+|+++++++.+++ .+||
T Consensus 93 ~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p 172 (496)
T 3ks9_A 93 IEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172 (496)
T ss_dssp HHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCC
Confidence 9987 348999999999999999999999999999999999999998 4799
Q ss_pred ceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH
Q 008904 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (549)
Q Consensus 135 ~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l 214 (549)
|+||+.|++..++.++++++++|||+||++|++|++||+...+.|++++++.|+||++.+.++.. ....++..++++|
T Consensus 173 ~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~i 250 (496)
T 3ks9_A 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRKL 250 (496)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHHH
T ss_pred ceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887654 4578899999999
Q ss_pred hcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHH
Q 008904 215 RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD 292 (549)
Q Consensus 215 ~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 292 (549)
+++ ++++|++++....+..++++++++|+.. .+.||+++.|....... ......+.|++++.++.++.+.+++
T Consensus 251 ~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 251 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHh
Confidence 984 8899999999999999999999999863 46899998775431110 0123568899999999999999998
Q ss_pred HHH---------------HHHhhcCCCCC------------------------CCchhhhHhHHHHHHHHHHHHHHhcCC
Q 008904 293 FVS---------------RWNTLSNGSIG------------------------LNPYGLYAYDTVWMIARALKLFLDQGN 333 (549)
Q Consensus 293 f~~---------------~~~~~~~~~~~------------------------~~~~~~~~yDav~~~a~Al~~~~~~~~ 333 (549)
|++ .|+..|+|... .......+|+|||++|+|||+++.+.+
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 864 37766654210 011234699999999999999986432
Q ss_pred CccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEE
Q 008904 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQI 408 (549)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~V 408 (549)
.. ....|....++. +++|+++|++++|.+.+| .|.||++|+. ...|+|+|++. ...+++|
T Consensus 406 ~~-------------~~~~c~~~~~~~-~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 PG-------------HVGLCDAMKPID-GSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp TT-------------CSSCCGGGSSCC-HHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEE
T ss_pred CC-------------CCCCCcCCCCCC-HHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEE
Confidence 11 123465544564 899999999999999999 5999999996 68999999972 3456999
Q ss_pred eEeeCCCCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCcc
Q 008904 409 GYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRG 454 (549)
Q Consensus 409 G~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~ 454 (549)
|.|+.. .|.++ .+.| |.++..++|.+
T Consensus 471 G~~~~~-~l~i~------------------~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 471 GTWHEG-VLNID------------------DYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EEEETT-EEEEC------------------TTTC------------
T ss_pred EEEeCC-eEEEe------------------hhhc-ccCCCCCCCCC
Confidence 999842 34432 2356 76666666653
No 6
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=8.6e-52 Score=433.67 Aligned_cols=390 Identities=21% Similarity=0.313 Sum_probs=322.6
Q ss_pred CCCceEEEEEEeccCC-------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~ 88 (549)
..+++|+||++||++. ..|.....|+++|+++||+++++|||++|+++++|+++++..+++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 4678999999999973 357788899999999999999999999999999999999999999999887
Q ss_pred h-------------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCC
Q 008904 89 E-------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (549)
Q Consensus 89 ~-------------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps 142 (549)
+ ++|.+||||.+|..+.+++.+++.+++|+|+++++++.|++ .+|||+||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 48999999999999999999999999999999999999998 479999999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeE
Q 008904 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARV 221 (549)
Q Consensus 143 ~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~v 221 (549)
+..++.++++++++|||+||++|++|++||....+.|++.+++.|+||++.+.++.. ....++...+.++++ +++++
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~v 247 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 247 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999998888753 347789999999964 79999
Q ss_pred EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHH-------
Q 008904 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFV------- 294 (549)
Q Consensus 222 iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~------- 294 (549)
||+++....+..+++++.++|+ +++||+++.|....... ......+.|++++.++..+.+.+++|+
T Consensus 248 Ii~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~ 320 (555)
T 2e4u_A 248 VVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYN 320 (555)
T ss_dssp EEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCccc
Confidence 9999999999999999999886 68999998775432211 112356789999988776666665543
Q ss_pred --------HHHHhhcCCCC---------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccC
Q 008904 295 --------SRWNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (549)
Q Consensus 295 --------~~~~~~~~~~~---------------------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~ 345 (549)
+.|+..|++.. .+..+++.+||||+++|+|||++..+....
T Consensus 321 ~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~---------- 390 (555)
T 2e4u_A 321 NHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ---------- 390 (555)
T ss_dssp CTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC----------
Confidence 45777776421 134567889999999999999997532110
Q ss_pred CCCCccccCCccccCchHHHHH-HHHhcccc------cccee-eEEccCCCCCCCceEEEEEe---eCceeeEEeEeeCC
Q 008904 346 LGGGTLNLGALSIFDGGKKFLA-NILQTNMT------GLSGP-IHFNQDRSLLHPSYDIINVI---EHGYPQQIGYWSNY 414 (549)
Q Consensus 346 ~~~~~~~c~~~~~~~~~~~l~~-~l~~~~f~------g~tG~-v~fd~~g~r~~~~~~I~~~~---~~~~~~~VG~w~~~ 414 (549)
....|...... ++++|++ +|++++|. |.+|. |.||++|++ ...|+|++++ +...+++||.|++
T Consensus 391 ---~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~- 464 (555)
T 2e4u_A 391 ---TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE- 464 (555)
T ss_dssp ---CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS-
T ss_pred ---CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc-
Confidence 01124332223 4889999 99999999 99997 999999997 5889999996 2224699999984
Q ss_pred CCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCccccc
Q 008904 415 SGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVF 457 (549)
Q Consensus 415 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~ 457 (549)
.|.+ +.+.|.|++ .++|.|+|.
T Consensus 465 -~l~i------------------~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 465 -TLSL------------------DVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp -SEEC------------------CGGGCCCTT--SSCCCCCSS
T ss_pred -eEEE------------------eccccccCC--CCCcceeeC
Confidence 3433 235789987 678999983
No 7
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=1.4e-51 Score=414.83 Aligned_cols=369 Identities=19% Similarity=0.274 Sum_probs=306.3
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCCh-HHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNG-FLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
.++|+||+++|+++..|...+.|+++|+++||+++++|+|++|+++++|+++++ ..+...+|++++++|.+||||.+|.
T Consensus 2 ~~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~ 81 (393)
T 3om0_A 2 LSSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSP 81 (393)
T ss_dssp CCEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCH
T ss_pred CcceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCch
Confidence 357999999999998999999999999999999999999999999999999976 4667889999988999999999995
Q ss_pred H-HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCce--EEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 103 M-AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFF--VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 103 ~-~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~--~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
. +.+++++++.+++|+|++++++ ++ ..||++ ||+.|++..++.++++++++++|++|++||++++||....+.
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~ 158 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEEL 158 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHH
T ss_pred hHHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHH
Confidence 5 5799999999999999997664 33 468888 999999999999999999999999999999999988765444
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+ +.+.+.|++|.... ++ . ..++..++.+|+++++++|++++....+..++++++++||..+.|+||++++...
T Consensus 159 ~-~~~~~~g~~v~~~~-~~-~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 231 (393)
T 3om0_A 159 V-RGFLISKETLSVRM-LD-D----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFP 231 (393)
T ss_dssp H-HHHHHSSSCEEEEE-CC------CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGG
T ss_pred H-HhhhccCCeEEEEe-cC-C----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEeccccc
Confidence 4 55677899987654 33 2 4578899999999999999999999999999999999999988999999987554
Q ss_pred ccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQG 332 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~ 332 (549)
..+.. .......|++++....+..+.+++|.++|+++++.. ..+..+++++||||+++++|++++.+..
T Consensus 232 ~~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~ 306 (393)
T 3om0_A 232 ILHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQ 306 (393)
T ss_dssp GCCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcc
Confidence 43321 122345678888888888888999999888877621 2466789999999999999999985432
Q ss_pred CCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEee
Q 008904 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (549)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~ 412 (549)
.. ......|....+|.++..|.++|++++|+|++|+++||++|++....|+|++++++++ ++||.|+
T Consensus 307 ~~------------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~ 373 (393)
T 3om0_A 307 EI------------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGH-REIGVWY 373 (393)
T ss_dssp CC------------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEE-EEEEEEE
T ss_pred cC------------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCc-eEeeeEc
Confidence 11 1234568877788889999999999999999999999999999889999999998776 9999999
Q ss_pred CCCCCccc
Q 008904 413 NYSGLSVV 420 (549)
Q Consensus 413 ~~~~l~~~ 420 (549)
+..||+++
T Consensus 374 ~~~gl~~~ 381 (393)
T 3om0_A 374 SNRTLAMN 381 (393)
T ss_dssp CC------
T ss_pred CCCCcccc
Confidence 99888664
No 8
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=4e-51 Score=411.93 Aligned_cols=369 Identities=21% Similarity=0.328 Sum_probs=317.0
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
+++|+||+++|++ ...|...+.|+++|+++||+++++|+|++|++++.|.. .|+..+...+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999996 35678899999999999999999999999999998876 588899999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
..+.+++++++.+++|+|+++++++.+++. .+|+||+.|++..++.++++++++++|++|++|+ +++||....+.+.+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999998888763 5789999999999999999999999999999998 66799999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++|.... ++.. ..++..++++|+++++++|++++...++..++++++++||..+.|+||+++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999998875 7644 7789999999999999999999999999999999999999999999999875443222
Q ss_pred CCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCC----------CCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSI----------GLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
... ......++.++....+..+..++|.++|++++.... .++.+++.+|||++++++|++++...
T Consensus 235 ~~~-----~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~ 309 (395)
T 3h6g_A 235 VEP-----YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM 309 (395)
T ss_dssp CTT-----TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hHH-----hccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC
Confidence 211 111122357777777888999999999987653211 14568999999999999999986332
Q ss_pred CCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEcc-CCCCCCCceEEEEEeeCceeeEEeE
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVIEHGYPQQIGY 410 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~-~g~r~~~~~~I~~~~~~~~~~~VG~ 410 (549)
....+.|.....|.++..|.++|++++|+|++|+++||+ +|+|....|+|++++++++ ++||.
T Consensus 310 ---------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~-~~vG~ 373 (395)
T 3h6g_A 310 ---------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGT 373 (395)
T ss_dssp ---------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEE-EEEEE
T ss_pred ---------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCc-eEEEE
Confidence 123457887778888999999999999999999999999 9999888999999998887 99999
Q ss_pred eeCCCCCccc
Q 008904 411 WSNYSGLSVV 420 (549)
Q Consensus 411 w~~~~~l~~~ 420 (549)
|++..|+++.
T Consensus 374 w~~~~g~~~~ 383 (395)
T 3h6g_A 374 WDPASGLNMT 383 (395)
T ss_dssp EETTTEECCC
T ss_pred EcCCCCcccc
Confidence 9999888664
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=5.9e-51 Score=415.80 Aligned_cols=385 Identities=18% Similarity=0.282 Sum_probs=320.7
Q ss_pred CCCceEEEEEEeccCC-----CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc--CcEE
Q 008904 22 LKPEVLNVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLA 94 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~a 94 (549)
...++|+||+++|++. ..|.....|+++|+++||++ ++++|++|+++++|+++++..+++.+++++.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 5678999999999985 34678899999999999999 78889999999999999999999999999974 8999
Q ss_pred EEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCccc
Q 008904 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGR 173 (549)
Q Consensus 95 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~ 173 (549)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|++|+++++||.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999988 4799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
...+.|.+.+++.|+||+....++. ++..++.+|+++++++|++++...++..++++++++|+...+|+||.+
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 241 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIP 241 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEE
T ss_pred HHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEc
Confidence 9999999999999999999887762 467889999999999999999999999999999999999888999999
Q ss_pred CCcccccCC--------CCcCChhhHhhccceEEEeEecCCC--------hhHHHHHHHHHhh-cCCCCCCCchhhhHhH
Q 008904 254 TWLSTFIDS--------KSPLSLKTAKSILGALTLRQHTPDS--------KRRRDFVSRWNTL-SNGSIGLNPYGLYAYD 316 (549)
Q Consensus 254 ~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~yD 316 (549)
+.....+.. ...........+.|++++.++.+.. +..++|.++|+++ ++ ..++.+++++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~--~~~~~~a~~~YD 319 (433)
T 4f11_A 242 GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG--VGPSKFHGYAYD 319 (433)
T ss_dssp SCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT--SCCCTTHHHHHH
T ss_pred CcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC--CCcccchhhHHH
Confidence 883332210 0111134457889999998865432 3378899999887 44 567788899999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccC--CccccCchHHHHHHHHhccccccceeeEEccCCCCCCCce
Q 008904 317 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG--ALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSY 394 (549)
Q Consensus 317 av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~ 394 (549)
||+++|+|++++..+..... ....|. ....|.++..|.++|++++|+|++|+|+| ++|+|. ..|
T Consensus 320 Av~~la~Al~~a~~~~~~~~------------~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~ 385 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHASS------------RHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHSS------------SCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEE
T ss_pred HHHHHHHHHHHHHHHHhccC------------CCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeE
Confidence 99999999999876421100 000111 11234468999999999999999999999 899985 899
Q ss_pred EEEEEeeCceeeEEeEeeCCCC-CcccCCcccccCCCCCCCCcccceeeEeCCCCc
Q 008904 395 DIINVIEHGYPQQIGYWSNYSG-LSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVT 449 (549)
Q Consensus 395 ~I~~~~~~~~~~~VG~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~ 449 (549)
+|++++++.+ ++||.|++... |.+ +.+.|.||++.+
T Consensus 386 ~I~~~~~g~~-~~VG~~~~~~~~l~~------------------~~~~i~W~~~~~ 422 (433)
T 4f11_A 386 KFTQFQDSRE-VKVGEYNAVADTLEI------------------INDTIRFQGSEP 422 (433)
T ss_dssp EEEEEETTEE-EEEEEEETTTTEEEE------------------CTTTCCCSSSSC
T ss_pred EEEEEECCce-EEEEEEECCCCeEEE------------------eCCceECCCCCC
Confidence 9999987555 99999986531 222 224789998773
No 10
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=7e-51 Score=406.72 Aligned_cols=364 Identities=20% Similarity=0.313 Sum_probs=291.3
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
.+|+||++||++. ...+.|+++|+++||++ |++|++++.|++ +++..+++.+|++++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999975 46799999999999998 689999999965 59999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.+++++++.+++|+|++++ +. ...++|+||+.|+ ++.++++++++|+|++|++|| |++||....+.|.+.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~--~~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSF--PT--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSC--CC--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCC--CC--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 99999999999999999865 22 2346789999886 899999999999999999999 7899999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|++|+....++........++..+|.+|+++++++|++++....+..++++++++||..++|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999987655422001357899999999999999999999999999999999999999889999999754332221
Q ss_pred CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
........+++++....+..|.+++|.++|+++++.. ..+..+++++||||+++++|++++.+++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1112233457788877888899999999999887632 147788999999999999999999875433211
Q ss_pred cCCccccCCCCCcccc--CCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCC
Q 008904 338 SNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~ 415 (549)
.+....| ....+|.+|..|.++|++++|+|++|+|+||++|+|....|+|+++.++++ ++||.|++..
T Consensus 300 ---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~~~ 369 (376)
T 3hsy_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (376)
T ss_dssp ---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ---------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCc-eEEEEEcCCC
Confidence 1223467 555678889999999999999999999999999999889999999998887 9999999998
Q ss_pred CCcc
Q 008904 416 GLSV 419 (549)
Q Consensus 416 ~l~~ 419 (549)
||..
T Consensus 370 g~~~ 373 (376)
T 3hsy_A 370 KMVV 373 (376)
T ss_dssp EEEE
T ss_pred Ccee
Confidence 8754
No 11
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=2.3e-52 Score=429.89 Aligned_cols=369 Identities=20% Similarity=0.343 Sum_probs=282.9
Q ss_pred CCCceEEEEEEeccCC-------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~ 88 (549)
..+++|+||++||++. ..|.+...|+++|+|+||+++++|||++|+++++|+|+++..+++.+.+++
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 6789999999999973 257788999999999999999999999999999999999999999999988
Q ss_pred h-----------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcH
Q 008904 89 E-----------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDL 144 (549)
Q Consensus 89 ~-----------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~ 144 (549)
+ ++|.|||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999998 58999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhh-cCeEEEEEEccCCCCCCChh--hHHHHHHHHh-cCCCe
Q 008904 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTET--DVRNELVKVR-MMEAR 220 (549)
Q Consensus 145 ~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~--~~~~~l~~l~-~~~~~ 220 (549)
.++.++++++++|||+||++|++|++||+...+.|.+.+++ .|+||++.+.++.. .... ++...+.+++ +++++
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~--~~~~~~d~~~~l~~i~~~s~a~ 249 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQE--RKDRTIDFDRIIKQLLDTPNSR 249 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC----
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCC--CccchHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999998875 79999988887754 2223 6778889988 58999
Q ss_pred EEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHH-----
Q 008904 221 VIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS----- 295 (549)
Q Consensus 221 viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~----- 295 (549)
+||+++....+..++++++++|+.. .++||+++.|....... ......+.|.+++.++..+.|.+++|++
T Consensus 250 vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 324 (481)
T 3mq4_A 250 AVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLE 324 (481)
T ss_dssp CEEECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred EEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcC
Confidence 9999999999999999999999863 48999999886532221 1223568999999999999999998864
Q ss_pred ----------HHHhhcCCCCC--------------------------CCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 296 ----------RWNTLSNGSIG--------------------------LNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 296 ----------~~~~~~~~~~~--------------------------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.|+..|+|... .......+||||+++|+|||+++.+.+..
T Consensus 325 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---- 400 (481)
T 3mq4_A 325 NNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD---- 400 (481)
T ss_dssp TCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC----
Confidence 36666553210 01334569999999999999998642211
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEEeEee
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQIGYWS 412 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~VG~w~ 412 (549)
....|.....+. +++|+++|++++|.+.+| .|.||++|++ ...|+|+|++. ...+++||.|+
T Consensus 401 ---------~~~~c~~~~~~~-~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 ---------YRGVCPEMEQAG-GKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ------------CCHHHHTSC-HHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred ---------CCCCCCCCCCcC-HHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 112454433453 889999999999999999 6999999996 68999999972 22458999998
No 12
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=6.4e-50 Score=409.03 Aligned_cols=363 Identities=16% Similarity=0.238 Sum_probs=298.8
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCC----CCCCceEEEEEecCCCChHHHHHHHHHHH----hcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPR----VLGGRKLSITMHDAKFNGFLSIMGALQFM----ETD 91 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~----il~g~~l~~~~~d~~~~~~~a~~~~~~l~----~~~ 91 (549)
..++|+||+++|++.. .|.....|+++|+++||++++ +|||++|+++++|+++++. +++.+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 4578999999999743 345678999999999999998 8899999999999999987 766665554 338
Q ss_pred cEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCC--CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC
Q 008904 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL--QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 169 (549)
Q Consensus 92 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~--~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~ 169 (549)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ .|||+||+.|++..++.++++++++|+|+||++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999884 79999999999999999999999999999999999999
Q ss_pred Ccccc---hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 170 DQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 170 ~~g~~---~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
+||+. ..+.|.+.+++.|+||+....++.. ..++...+++|+ +++++|++++....+..++++++++||..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 8999999999999999987766533 446889999999 899999999999999999999999999888
Q ss_pred CeEEEEeCCccc------ccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhh-----cCCCCCCCchhhhHh
Q 008904 247 GYVWIATTWLST------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-----SNGSIGLNPYGLYAY 315 (549)
Q Consensus 247 ~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~~y 315 (549)
.|+||.+++... .+...............++.++..+.+..|.+++|.++|+.+ |+....+..+++.+|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999883221 111111000111134556667777777889999999999876 432123456788999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceE
Q 008904 316 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395 (549)
Q Consensus 316 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~ 395 (549)
|||+++|+|++++..++.. +.++++|+++|++++|+|++|+|.||++|++. ..|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEE
Confidence 9999999999998754311 12488999999999999999999999999974 8999
Q ss_pred EEEEee--CceeeEEeEeeCCCC
Q 008904 396 IINVIE--HGYPQQIGYWSNYSG 416 (549)
Q Consensus 396 I~~~~~--~~~~~~VG~w~~~~~ 416 (549)
|++++. ++.+++||.|++..+
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 999973 455699999998653
No 13
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.6e-49 Score=405.66 Aligned_cols=360 Identities=15% Similarity=0.199 Sum_probs=300.4
Q ss_pred ceEEEEEEeccCC---CCchHHHH-HHHHHHHHHHcCCCCCCCceEEEEEecC-----CCChHHHHHHHHHHHh-cCcEE
Q 008904 25 EVLNVGAIFSFGT---VNGQVSRI-AMKAAQDDINSDPRVLGGRKLSITMHDA-----KFNGFLSIMGALQFME-TDTLA 94 (549)
Q Consensus 25 ~~i~IG~l~~~~~---~~g~~~~~-a~~~Av~~iN~~~~il~g~~l~~~~~d~-----~~~~~~a~~~~~~l~~-~~v~a 94 (549)
++|+||+++|++. ..|..... |+++|+++||+++++|||++|+++++|+ +|++..++..+++++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 5799999999973 45666777 9999999999999999999999999999 4556688888888775 59999
Q ss_pred EEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEE------Ee
Q 008904 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI------FN 167 (549)
Q Consensus 95 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii------~~ 167 (549)
||||.+|..+.+++++++.+++|+|+++++++.++++ .|||+||+.|++..++.++++++++|+|+||++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999884 6999999999999999999999999999999999 66
Q ss_pred cCCcccchHHHHHHHHhh-cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 168 DDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 168 ~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
++++| ..++.+.+.+.+ .|+||+....++. ...++..++++|++ ++++|++++....+..++++++++|+...
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~----~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEG----DPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTT----CGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecC----chhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 77778 566778888888 9999998776543 36789999999998 89999999999999999999999999877
Q ss_pred CeEEEEeCCcccccC---------CC---CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcC----CCC---CC
Q 008904 247 GYVWIATTWLSTFID---------SK---SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN----GSI---GL 307 (549)
Q Consensus 247 ~~~~i~~~~~~~~~~---------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~---~~ 307 (549)
+++||.++.+..... .. ........++..|++.+.+..+..+.+++|.++|++.++ +.. .+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999987654321 00 000123345688988888877778889999998876653 111 25
Q ss_pred CchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCC
Q 008904 308 NPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 387 (549)
Q Consensus 308 ~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g 387 (549)
..+++++||||+++|+|++++..++.. +.++++|+++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 567889999999999999998764321 11488999999999999999999999999
Q ss_pred CCCCCceEEEEEe-eCceeeEEeEeeCCC
Q 008904 388 SLLHPSYDIINVI-EHGYPQQIGYWSNYS 415 (549)
Q Consensus 388 ~r~~~~~~I~~~~-~~~~~~~VG~w~~~~ 415 (549)
++. ..|+|++++ .++.+++||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 985 799999994 234459999998765
No 14
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=2e-49 Score=397.51 Aligned_cols=363 Identities=19% Similarity=0.259 Sum_probs=311.0
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
..+++|+||+++|++.. ..+.|+++|+++||+++ +|++++.|+++ ++..+++++|++++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 46789999999999864 78999999999999975 99999999886 9999999999999999999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
|..+.+++++++.+++|+|+++ ++.++ ..+|.||+.|+ ++.++++++++++|++|++|| +++||....+.+.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 44443 45678888887 899999999999999999999 6689999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+||+....++. ...++..+|.+|+++++++|++++....+..++++++++||...+|+||+++.+....
T Consensus 149 ~~~~~~g~~v~~~~~~~~----~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTT----TEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGC----CHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccC----CchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 999999999998875543 3778999999999999999999999999999999999999998899999998654332
Q ss_pred CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
+. ........|++++.+..+..+.+++|.++|+++++.. ..++.+++++||||+++++|++++.+.+..
T Consensus 225 ~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~ 299 (384)
T 3saj_A 225 DL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRID 299 (384)
T ss_dssp CH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 22 2333455678899888888999999999999887521 134677999999999999999999875433
Q ss_pred ccccCCccccCCCCCccccCCc--cccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEee
Q 008904 335 ISFSNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~ 412 (549)
... .+....|... .+|.++..|.++|++++|+|++|+++||++|++....|+|+++++++. ++||.|+
T Consensus 300 ~~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~W~ 369 (384)
T 3saj_A 300 ISR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGI-RKIGYWN 369 (384)
T ss_dssp CCC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred eec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCc-ceeEEEc
Confidence 211 1234568753 567789999999999999999999999999999889999999998887 9999999
Q ss_pred CCCCCccc
Q 008904 413 NYSGLSVV 420 (549)
Q Consensus 413 ~~~~l~~~ 420 (549)
+..|+.+.
T Consensus 370 ~~~gl~~~ 377 (384)
T 3saj_A 370 EDDKFVPA 377 (384)
T ss_dssp TTTEEEEC
T ss_pred CCCCcccc
Confidence 98887654
No 15
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=8.9e-50 Score=400.35 Aligned_cols=338 Identities=21% Similarity=0.309 Sum_probs=282.3
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVG---- 97 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiG---- 97 (549)
.+++|+||+++|++ ..+.|+++|+++||++++. .+++|+++..|+++|+.++++.+|+ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46799999999997 5789999999999999865 5789999999999999999988777 78889999999
Q ss_pred -CCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccch
Q 008904 98 -PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (549)
Q Consensus 98 -p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~ 175 (549)
|.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++|+|+||++||+|++||+..
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567888899999999999999999999998987 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCeEE-----------EEE-------E---ccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHH
Q 008904 176 VTALGDKLAEIRCKI-----------SYK-------S---ALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v-----------~~~-------~---~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~i 234 (549)
.+.|++.+++.|+++ .+. . .+. ....++..++.+|+++++++||+++....+..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~----~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFE----PGTKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEEC----TTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccC----CchhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 999999999988743 221 1 122 125688999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhH
Q 008904 235 FDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYA 314 (549)
Q Consensus 235 l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (549)
+++|+++||+..+|+||+++.+... ........|++++..+.+.. .++.+
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~----------------------~~~~~ 281 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN----------------------ESAHI 281 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC----------------------HHHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc----------------------hhHHH
Confidence 9999999999888999999986532 12235678999999875533 26789
Q ss_pred hHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccC-CccccCchHHHHHHHHhccc-cccceeeEEccCCCCCCC
Q 008904 315 YDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG-ALSIFDGGKKFLANILQTNM-TGLSGPIHFNQDRSLLHP 392 (549)
Q Consensus 315 yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~l~~~l~~~~f-~g~tG~v~fd~~g~r~~~ 392 (549)
||||+++|+|+++++.+... ..+...|. ...+|..+..|.+++++++| +|++|++.||++|+|...
T Consensus 282 YdAV~~~a~Al~~~~~~~~~------------~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~ 349 (384)
T 3qek_A 282 SDAVAVVAQAIHELFEMENI------------TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA 349 (384)
T ss_dssp HHHHHHHHHHHHHHHTSSSC------------CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHhccCC------------CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc
Confidence 99999999999999865421 11233464 35678889999999999998 999999999999998789
Q ss_pred ceEEEEEeeCceeeEEeEeeC
Q 008904 393 SYDIINVIEHGYPQQIGYWSN 413 (549)
Q Consensus 393 ~~~I~~~~~~~~~~~VG~w~~ 413 (549)
.|+|+++++.++ ++||.|+.
T Consensus 350 ~~~I~~~~~~~~-~~VG~w~~ 369 (384)
T 3qek_A 350 QYSIMNLQNRKL-VQVGIFNG 369 (384)
T ss_dssp CEEEEEEETTEE-EEEEEECS
T ss_pred cEEEEEEcCCce-EEEEEEeC
Confidence 999999998776 99999984
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=7.4e-44 Score=352.33 Aligned_cols=341 Identities=14% Similarity=0.223 Sum_probs=260.9
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEe-cCCCChHHHHHHHHHHHhc-CcEEEEc-CCC
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMET-DTLAIVG-PQS 100 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~-~v~aiiG-p~~ 100 (549)
+..+.||++|..+.. +.+++-|++..|.-. +..+|..++. ...+||..+.+.+|+++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457899999977652 889999999998543 2356766544 3567999999999999975 7989885 444
Q ss_pred chHHHH--HHHhhhhcCCcEEecccCCC-CCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 101 AVMAHV--LSHLANELQVPLLSFTALDP-TLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 101 s~~~~~--va~~~~~~~iP~Is~~~~~~-~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
+..+.+ ++.+++.+++|+|+++++++ .|++ .+||++||+.|++..|+.++++++++|||++|++||+|+ ...
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 444545 89999999999999999988 8998 479999999999999999999999999999999999874 345
Q ss_pred HHHHHHHhhc--C--eEEEEEEccCCCCCCChhhHHHHH-HHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 177 TALGDKLAEI--R--CKISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 177 ~~l~~~~~~~--g--~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.|.+.+++. | +|+.+...++.. ....+++..+ ++++++++++||++|+.+.+..++++|.++||+.++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 5666666554 4 477766554433 2234566778 6899999999999999999999999999999999999999
Q ss_pred EeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 252 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
+++.+....+... .....|++++++.. |+. ...+++||||+++|+|++++.++
T Consensus 228 ~t~~~~~~~~~~~------~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~ 280 (364)
T 3qel_B 228 VPSLVAGDTDTVP------SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSE 280 (364)
T ss_dssp ECHHHHCSTTCCC------TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecccccCccccc------ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987643332211 13457888877643 321 23578999999999999998765
Q ss_pred CCCccccCCccccCCCCCccccCCcc--ccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEee-CceeeEE
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIE-HGYPQQI 408 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~-~~~~~~V 408 (549)
.... .....+|.... +|.+|..|.++|++++|+|+ ++.||++|+|.++.|+|+|++. .++ ++|
T Consensus 281 ~~~i-----------~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~-~~V 346 (364)
T 3qel_B 281 HSFI-----------PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKW-ERV 346 (364)
T ss_dssp TSCC-----------CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCE-EEE
T ss_pred cCCC-----------CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCc-EEE
Confidence 3221 12345787653 57889999999999999998 8999999999999999999984 555 999
Q ss_pred eEeeCCCCCccc
Q 008904 409 GYWSNYSGLSVV 420 (549)
Q Consensus 409 G~w~~~~~l~~~ 420 (549)
|.|++. +|+|+
T Consensus 347 G~W~~~-~L~~~ 357 (364)
T 3qel_B 347 GKWKDK-SLQMK 357 (364)
T ss_dssp EEECSS-CEEES
T ss_pred EEECCC-eEEeC
Confidence 999843 56553
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.4e-39 Score=326.87 Aligned_cols=355 Identities=14% Similarity=0.115 Sum_probs=295.5
Q ss_pred CCceEEEEEEeccCCC--CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 008904 23 KPEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQ 99 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~ 99 (549)
..++|+||+++|++.. .|.....++++|+++||+++++++|++|+++++|+++++..+.+.+++++.+ +|.+||||.
T Consensus 2 s~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~ 81 (387)
T 3i45_A 2 SLEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTF 81 (387)
T ss_dssp CCCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECC
T ss_pred CCCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCc
Confidence 3578999999999763 4667889999999999999999866999999999999999999999999985 999999999
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
+|..+.++++++...++|+|++.++++.++. ..+||+||+.|++..++.++++++.+++|++|++|+.+++||....+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~ 161 (387)
T 3i45_A 82 LSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVAR 161 (387)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHH
Confidence 9999999999999999999999888877775 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 179 LGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 179 l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+++.+++. |++++....++.. ..++...++++++.++++|++++....+..++++++++|+... +|+.+..+
T Consensus 162 ~~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~ 235 (387)
T 3i45_A 162 FKELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLT 235 (387)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEE
T ss_pred HHHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecC
Confidence 99999998 8999887777654 5688999999999999999999999999999999999998533 34443222
Q ss_pred ccccCCCCcCChhhHhhccceEEEeE--ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQ--HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
....... ........|++.... .....+..++|.++|+++++ ..++.++...|||++++++|++++..
T Consensus 236 ~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~Yda~~~~a~Al~~ag~---- 305 (387)
T 3i45_A 236 GEPEYLN----PLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--EDPFVGSLVGYNTLTAMAVAFEKAGG---- 305 (387)
T ss_dssp ESHHHHG----GGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred CChHHHH----HhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHHHHhCC----
Confidence 1110000 001123567665432 23567889999999999987 46778899999999999999998621
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe-eCceeeEEeEeeC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYWSN 413 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~~VG~w~~ 413 (549)
. ++..|.++|++++|+|++|+++|++++++......|.+++ .++. ..++.|..
T Consensus 306 ------------------------~-~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~-~~i~~w~~ 359 (387)
T 3i45_A 306 ------------------------T-ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGK-GVMVDWRY 359 (387)
T ss_dssp ------------------------C-CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTE-EEEEEEEE
T ss_pred ------------------------C-CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCc-eeEEeeEE
Confidence 1 4889999999999999999999997555566778888876 5566 88999987
Q ss_pred CCCCcc
Q 008904 414 YSGLSV 419 (549)
Q Consensus 414 ~~~l~~ 419 (549)
..|...
T Consensus 360 ~~~~~~ 365 (387)
T 3i45_A 360 VDGGSV 365 (387)
T ss_dssp ECGGGG
T ss_pred eCchhc
Confidence 766544
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.1e-39 Score=330.95 Aligned_cols=331 Identities=15% Similarity=0.099 Sum_probs=270.7
Q ss_pred CCCCceEEEEEEeccCCCC---chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHh-cCcEEE
Q 008904 21 ALKPEVLNVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFME-TDTLAI 95 (549)
Q Consensus 21 ~~~~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~-~~v~ai 95 (549)
+...++|+||+++|++... |.....++++|+++||+++|++ |++|+++++|++ +++..+++.+++++. ++|.+|
T Consensus 9 a~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~ai 87 (419)
T 3h5l_A 9 AQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASAL 87 (419)
T ss_dssp ----CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEE
T ss_pred hccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 3567899999999998643 7788999999999999999997 899999999987 599999999999998 699999
Q ss_pred EcCCCchHHHHHHHhhhhcCCcEEecccCCCCCC-----C-CCCCceEEccCCcHHHHHHHHHHHHHc--------CCcE
Q 008904 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-----P-LQYPFFVQTAPNDLYLMSAIAEMVSYF--------GWGE 161 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls-----~-~~~~~~~r~~ps~~~~~~ai~~~l~~~--------~W~~ 161 (549)
|||.+|..+.++++++..+++|+|++++ .+.++ + ..|+|+||+.|++..++.+++++++++ +|++
T Consensus 88 iG~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (419)
T 3h5l_A 88 IAGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNK 166 (419)
T ss_dssp ECSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSE
T ss_pred EccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCE
Confidence 9999999999999999999999999643 32221 2 368999999999999999999999886 8999
Q ss_pred EEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHHHHH
Q 008904 162 VIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQR 240 (549)
Q Consensus 162 v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~a~~ 240 (549)
|++|+++++||....+.|++.+++.|++|+....++.. ..++..++.+|++.++++|++.+. +..+..+++++++
T Consensus 167 vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 167 IAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMT 242 (419)
T ss_dssp EEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTT
T ss_pred EEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHH
Confidence 99999999999999999999999999999988888755 578899999999999999999865 5789999999999
Q ss_pred cCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEe-cCCChhHHHHHHHHHhhcCCCCCCC-chhhhHhHHH
Q 008904 241 LGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLN-PYGLYAYDTV 318 (549)
Q Consensus 241 ~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~yDav 318 (549)
.|+ ...|+.++.+...... ........|++..... .+..+..++|.++|+++++. .+. .+++..|||+
T Consensus 243 ~g~---~~~~~~~~~~~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~--~p~~~~a~~~Yda~ 312 (419)
T 3h5l_A 243 DPT---NSLVYLQYGASLAAFR-----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD--LSSTASGCQTYSAL 312 (419)
T ss_dssp SCC---SCEEEECSGGGSHHHH-----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHH
T ss_pred cCC---CceEEecCCCCcHHHH-----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC--CCCcchhHHHHHHH
Confidence 987 3456666554321000 1223456777655433 34567899999999999873 343 5889999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCC
Q 008904 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSL 389 (549)
Q Consensus 319 ~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r 389 (549)
+++++|++++..... ...+.++..+.++|++++|+|++|.++||++|++
T Consensus 313 ~~~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~ 361 (419)
T 3h5l_A 313 YAYSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQS 361 (419)
T ss_dssp HHHHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCB
T ss_pred HHHHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCc
Confidence 999999998643211 0112248899999999999999999999999984
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=8.5e-39 Score=317.42 Aligned_cols=345 Identities=14% Similarity=0.125 Sum_probs=290.7
Q ss_pred ceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
++|+||+++|++.. .|.....++++|++++|+++|+ +|+++++++.|+++++..+.+.++++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 47999999999753 5677899999999999999998 5999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecCCcccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
..+.++++++...++|+|++.++++.+++..++++||+.|++..++.++++++ +++||++|++|+.++.++....+.+.
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999888887777668999999999999999999965 55799999999999899999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+++.....++.. ..++...++++++.++++|++++....+..+++++++.|+.. .|+..+.+....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KLVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EEEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cEEEeccccCHH
Confidence 9999999998777666644 567788899999999999999999999999999999999864 367665443210
Q ss_pred CCCCcCChhhHhhccceEEEeEecC-CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.. ........|++....+.+ ..+..++|.+.|+++ + ..++.++...|||++++++|++++..
T Consensus 233 ~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~p~~~~~~~yda~~~~~~al~~ag~--------- 295 (356)
T 3ipc_A 233 LA-----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--FNPEAYTLYSYAAMQAIAGAAKAAGS--------- 295 (356)
T ss_dssp HH-----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--CCCCTTHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HH-----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--CCcchhHHHHHHHHHHHHHHHHHhCC---------
Confidence 00 122345677776655443 457889999999988 4 45777899999999999999998621
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC--ceeeEEeEeeCC
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH--GYPQQIGYWSNY 414 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~--~~~~~VG~w~~~ 414 (549)
. ++..+.++|++.+|+|++|++.||++|++....|.|++++.+ |.|+.+..|.+.
T Consensus 296 -------------------~-~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -------------------V-EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -------------------C-CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -------------------C-CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 1 488999999999999999999999999988788999999865 666999998764
No 20
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=2.1e-38 Score=315.98 Aligned_cols=337 Identities=16% Similarity=0.152 Sum_probs=281.9
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhc-CcEEEEc
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
..++|+||+++|++.. .|.....++++|++++| +++ .|++|+++++|+.+ +|..+++.+.+|+.+ +|.+|||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3578999999999854 46788999999999998 566 49999999999975 899999999999976 9999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
|.+|..+.+++++++..++|+|+++++++.+++. .||+||+.|++..++.++++++++.+|+++++|+++++||....+
T Consensus 79 ~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~ 157 (371)
T 4f06_A 79 LYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAET 157 (371)
T ss_dssp CCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHH
Confidence 9999999999999999999999998888777653 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
.+++.+++.|++|+....++.+ .+|+..++.+|+++++++|++.+. ......+++++++.|+....+.++.....
T Consensus 158 ~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 158 AFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999998888865 678999999999999999987765 46788899999999987766677666543
Q ss_pred ccccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
...... ........|++....+.+ ..|..++|.+.|+++++....++.++...||++++++.|+++.. +.
T Consensus 234 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~a---g~ 305 (371)
T 4f06_A 234 VTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATS---GK 305 (371)
T ss_dssp GCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTT---TS
T ss_pred CCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhc---CC
Confidence 222111 122345667776665443 46788999999999886545677888999999999999998631 10
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 400 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~ 400 (549)
. ++..+.++|++++|+|++|+++||++++.....+.|.+++
T Consensus 306 ------------------------~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 306 ------------------------S-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp ------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred ------------------------C-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 1 4889999999999999999999998876555667777776
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=8.9e-38 Score=311.26 Aligned_cols=342 Identities=15% Similarity=0.198 Sum_probs=286.8
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
..+.+++||+++|++.. .|.....++++|++++|+ + .|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 45679999999999854 467889999999999999 5 48999999999999999999999999988 5999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEe-cCCcccch
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN-DDDQGRNG 175 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~-~~~~g~~~ 175 (549)
|.++..+.++++++..+++|+|++.++++.+++ .++++||+.|++..++.++++++ +++||++|++||. +++|+...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999877776654 46999999999999999999999 5589999999986 67788888
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.+.+.+.+++.|+++.... ++.. ..++...++++++.++++|++.+....+..+++++++.|+.. .|+..+.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 238 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDG 238 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGG
T ss_pred HHHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCC
Confidence 8999999999999998877 6644 567888899999999999999899999999999999999753 4676654
Q ss_pred cccccCCCCcCChhhHhhccceEEEeEecCC---ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 008904 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTPD---SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (549)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 332 (549)
+...... ........|++....+.+. .+..++|.+.|+++++ ..++.++...|||++++++|++++..
T Consensus 239 ~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~yda~~~~~~al~~ag~-- 309 (366)
T 3td9_A 239 ADAPELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG--KEPAALNALGYDAYMVLLDAIERAGS-- 309 (366)
T ss_dssp GCSTHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred cCCHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCCchhHHHHHHHHHHHHHHHHHhCC--
Confidence 4321000 1223467788777655443 6789999999999987 45788899999999999999998621
Q ss_pred CCccccCCccccCCCCCccccCCccccCchHHHHHHHHhcc-ccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEe
Q 008904 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (549)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~-f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w 411 (549)
. ++..+.++|++++ |+|++|++.|+++|++. ..+.|++++++.+ +.|+.|
T Consensus 310 --------------------------~-~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~-~~v~~~ 360 (366)
T 3td9_A 310 --------------------------F-DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSV-DFEAVI 360 (366)
T ss_dssp --------------------------C-CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEE-EEEEEE
T ss_pred --------------------------C-CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEE-EEEEec
Confidence 1 4889999999998 99999999999999975 5589999985555 999999
Q ss_pred eCC
Q 008904 412 SNY 414 (549)
Q Consensus 412 ~~~ 414 (549)
++.
T Consensus 361 ~~~ 363 (366)
T 3td9_A 361 NPD 363 (366)
T ss_dssp CGG
T ss_pred Chh
Confidence 875
No 22
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1.7e-37 Score=306.76 Aligned_cols=340 Identities=14% Similarity=0.163 Sum_probs=280.8
Q ss_pred ceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
++|+||+++|++.. .|.....++++|+++||+++++ +|++|++++.|+++++..+.+.+.++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 47999999999754 4667889999999999999998 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH-HcCCcEEEEEEecCCcccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
..+.++.+++...++|+|++.++++.+++..++++||+.|++..++.++++++. ++||++|++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 888889999999999999987777667654578999999999999999999985 5799999999998888888889999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ |+.++.+...
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~- 231 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA- 231 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-
Confidence 9999999998876666543 3466778899988899999998887888899999999998643 7777654321
Q ss_pred CCCCcCChhhHhhccceEEEeEe-cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
... ........|++...++ ....+..++|.+.|+++++ ..++.++..+|||++++++|++++..
T Consensus 232 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~al~~~g~--------- 296 (346)
T 1usg_A 232 SLS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALERTGS--------- 296 (346)
T ss_dssp THH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHHHHHHHhCC---------
Confidence 100 1122456787776544 2345778999999998876 45677899999999999999998621
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEE
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~V 408 (549)
. ++..|.++|++.+|+|++|++.|+++|++....|.|++++.+|.|+.|
T Consensus 297 -------------------~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 -------------------D-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp -------------------C-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred -------------------C-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 1 388999999999999999999999999987678999999733333543
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=3.9e-37 Score=305.71 Aligned_cols=344 Identities=15% Similarity=0.126 Sum_probs=287.1
Q ss_pred CceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEcCC
Q 008904 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVGPQ 99 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiGp~ 99 (549)
.++|+||+++|++.. .|.....++++|++++|++++++ |+++++++.|+++++..+.+.+.+++ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 468999999999743 46778999999999999999997 99999999999999999999999999 67999999999
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l 179 (549)
++..+.++.+++...++|+|++.++++.+++.. +++||+.|++..++.++++++.+.||++|++|+.++.++....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999888777776544 8999999999999999999999899999999999999999999999
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccc
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 259 (549)
.+.+++.|+++.....++.. ..++...++++++.++++|++.++...+..+++++++.|+..+ |+..+.+...
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~ 232 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP 232 (358)
T ss_dssp HHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH
T ss_pred HHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH
Confidence 99999999999877666644 4567788899988889999999999899999999999998543 7766544321
Q ss_pred cCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 260 IDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
... ........|++...++.+ ..+..++|.+.|+++++ ..++.+++..|||++++++|++++...
T Consensus 233 ~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~ag~~------ 299 (358)
T 3hut_A 233 KFI-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG--AIPTLFAAHGYDAVGIMLAAVGRAGPE------ 299 (358)
T ss_dssp HHH-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHH-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHhCCC------
Confidence 100 122345778887776544 46789999999999987 467889999999999999999996211
Q ss_pred cCCccccCCCCCccccCCccccCchHH-HHHHHHhc-cccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeC
Q 008904 338 SNDTKLNGLGGGTLNLGALSIFDGGKK-FLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~~~~~~~~~-l~~~l~~~-~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~ 413 (549)
++.. +.++|+++ +|+|++|+++|+++|++....+.|+++++ |.|+.+..+.+
T Consensus 300 -----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~-G~~~~~~~~~~ 353 (358)
T 3hut_A 300 -----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVRE-GDFRVIDREGH 353 (358)
T ss_dssp -----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEET-TEEEEC-----
T ss_pred -----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEEC-CEEEEeccccc
Confidence 3667 99999999 89999999999999997567889999974 44477765544
No 24
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=4.5e-37 Score=307.20 Aligned_cols=333 Identities=15% Similarity=0.147 Sum_probs=283.4
Q ss_pred CceEEEEEEeccCCC---C-chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 008904 24 PEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 98 (549)
.++|+||+++|++.. . |.....++++|++++ ++++ .|++++++++|+++++..+.+.+.+++. ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 468999999999743 3 677899999999999 4566 4899999999999999999999999998 799999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
.+|..+.++++++..+++|+|+++++++.+++ ..+||+||+.|++..++.++++++.+++|++|++|+.++.+|....+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888887776 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
.+.+.+++.|++++....++.. ..++...+.++++.++++|++.+....+..++++++++|+..+. .++..+.+.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999887777754 56788899999999999999999998999999999999987665 444444333
Q ss_pred cccCCCCcCChhhHhhccceEEEeEecCC-ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 258 TFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
..+. ........|++....+.+. .+..++|.++|+++++ ..++.+++..|||++++++|++++..
T Consensus 234 ~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~~~~Al~~ag~------ 299 (375)
T 3i09_A 234 NDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--KMPSSLQAADYSSVTTYLKAVQAAGS------ 299 (375)
T ss_dssp HHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred hhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCC------
Confidence 2210 1112456787776654433 5789999999999987 56788899999999999999999621
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
. ++..|.++|++++|+|++|.+.|+++|++. ..+.|+++++.
T Consensus 300 ----------------------~-~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~ 341 (375)
T 3i09_A 300 ----------------------T-DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKP 341 (375)
T ss_dssp ----------------------C-CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCG
T ss_pred ----------------------C-CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEecc
Confidence 1 488999999999999999999999999875 56778888743
No 25
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=6e-37 Score=307.94 Aligned_cols=350 Identities=15% Similarity=0.168 Sum_probs=284.6
Q ss_pred CceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCC-CCc--eEEEEEecCCCChHHHHHHHHHHH-hcCcEEEE
Q 008904 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVL-GGR--KLSITMHDAKFNGFLSIMGALQFM-ETDTLAIV 96 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il-~g~--~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aii 96 (549)
.++|+||+++|++.. .|.....++++|+++||+++|++ +|+ +|++++.|+++++..+.+.+.+++ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 468999999999854 46678999999999999999985 699 999999999999999999999999 67999999
Q ss_pred cCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEe-cCCcccc
Q 008904 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFN-DDDQGRN 174 (549)
Q Consensus 97 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~-~~~~g~~ 174 (549)
| .+|..+.++++++...++|+|++.++.+ +. .+|++||+.|++..++.++++++.+ +||++|++|+. ++++|..
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888999999999999999999765543 33 5799999999999999999999877 69999999999 8999999
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHH--HhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
..+.+++.+++.|+++.....++.. ..++...+.+ +++.++++|++.+....+..++++++++|+.. .++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~---~~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDA---FLLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCC---EEEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCc---eEEE
Confidence 9999999999999999888777754 6688999999 99999999999999899999999999999854 3555
Q ss_pred eCCcccccCCCCcCChhhHhhccc-eEEEeEec-----CCChhHHHHHHHHHhhcC-CCCCCCchhhhHhHHHHHHHHHH
Q 008904 253 TTWLSTFIDSKSPLSLKTAKSILG-ALTLRQHT-----PDSKRRRDFVSRWNTLSN-GSIGLNPYGLYAYDTVWMIARAL 325 (549)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~yDav~~~a~Al 325 (549)
.++.... ... ........| ++....+. ...+. .+|.++|+++++ .....+.++...|||++++++|+
T Consensus 231 ~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHH
Confidence 4432211 110 122345788 66665544 23444 679999999987 22223578899999999999999
Q ss_pred HHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhcccc--ccce-eeEEccCCCCCCCceEEEEEeeC
Q 008904 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT--GLSG-PIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~--g~tG-~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
+++...+.. .. ++..|.++|++.+|+ |++| ++.|+++|++....+.|++++.+
T Consensus 305 ~~a~~~g~~-----------------------~~-~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDLQ-----------------------ER-GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHHH-----------------------HH-THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCCC-----------------------CC-CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 885211100 01 488999999998898 9999 99999876666788999999445
Q ss_pred ceeeEEeEeeCC
Q 008904 403 GYPQQIGYWSNY 414 (549)
Q Consensus 403 ~~~~~VG~w~~~ 414 (549)
|.|+.|+.|...
T Consensus 361 G~~~~v~~~~~~ 372 (391)
T 3eaf_A 361 GELQLMGKFEAP 372 (391)
T ss_dssp SSEEEEEEECCC
T ss_pred CEEEEeeeecCc
Confidence 555999999753
No 26
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=1.1e-36 Score=304.38 Aligned_cols=346 Identities=11% Similarity=0.130 Sum_probs=289.3
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
...++|+||+++|++.. .|.....++++|++++| +++ +|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 56689999999999743 46678999999999998 444 79999999999999999999999999985 9999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
|.++..+.++.+++...++|+|++.++++.+++. .+|++||+.|++..++.++++++.++||++|++|+.++.+|....
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 9999999999999999999999998887777763 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ |+.++ +
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~ 240 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-F 240 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-G
T ss_pred HHHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-c
Confidence 99999999999999877666644 4577788999988899999998888999999999999997632 55554 3
Q ss_pred ccccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
... ... ........|++...++.+ ..+..++|.+.|+++++ ..++.++...|||++++++|++++...
T Consensus 241 ~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~~g~~--- 310 (375)
T 4evq_A 241 LTD-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--IPPDVFAVQGWDAGQLLDAGVKAVGGD--- 310 (375)
T ss_dssp GTT-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCH-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 211 110 223356788887766544 45889999999999887 567788999999999999999985210
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNY 414 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~ 414 (549)
+.++..|.++|++++|+|++|++.|+++|++ ...+.|++++++.+ +.|+.+.+.
T Consensus 311 ------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~-~~v~~~~~~ 364 (375)
T 4evq_A 311 ------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKS-VNLGLAAPA 364 (375)
T ss_dssp ------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEE-EEEEEEECS
T ss_pred ------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCc-EEeeehhhc
Confidence 1148899999999999999999999999987 46899999986665 999988653
No 27
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=8e-37 Score=305.79 Aligned_cols=334 Identities=12% Similarity=0.101 Sum_probs=280.7
Q ss_pred CCceEEEEEEeccCCC---C-chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEc
Q 008904 23 KPEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVG 97 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiG 97 (549)
..++|+||+++|++.. . |.....++++|++++ ++++ .|++++++++|+++++..+.+.+.+++. ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 3568999999999743 3 677899999999999 4566 4899999999999999999999999998 79999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
|.+|..+.++++++..+++|+|++.++++.+++ ..+||+||+.|++..++.++++++.++||++|++|++++.+|....
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999888888877 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...+.+++++++++|++.+....+..++++++++|+..+.+ ++.+..+
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 234 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMID 234 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEeccc
Confidence 99999999999999888777754 567888999999999999999999899999999999999876543 4443322
Q ss_pred -ccccCCCCcCChhhHhhccceEEEeEecCC-ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 -STFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
...+. ........|++....+.+. .+..++|.++|+++++ ..++.+++..|||++++++|++++..
T Consensus 235 ~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~Yda~~~~~~Al~~ag~---- 302 (379)
T 3n0w_A 235 ILTDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--KMPTNNQAGGYSAALQYLKAVNAIGS---- 302 (379)
T ss_dssp CHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred chHHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHHHHhCC----
Confidence 21110 1112457787766654433 5789999999999987 46788899999999999999999621
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhcccccccee-eEEccCCCCCCCceEEEEEeeC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~-v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
. ++..|.++|++++|++..|. +.|+++|++ ...+.|++++++
T Consensus 303 ------------------------~-~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~ 345 (379)
T 3n0w_A 303 ------------------------K-DPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKP 345 (379)
T ss_dssp ------------------------C-CHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCG
T ss_pred ------------------------C-CHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEch
Confidence 1 48899999999999999985 999999986 467888888743
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-37 Score=310.46 Aligned_cols=352 Identities=11% Similarity=0.008 Sum_probs=289.9
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
..++|+||+++|++.. .|.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 4579999999999754 46678999999999999999996 8999999999999999999999999997 9999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEecCCcccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~~~~~g~~~~ 176 (549)
.+|..+.++++++...++|+|+++++.+ +.+ ..++++||+.|++..++.++++++.+ +||++|++|+.++++|....
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6888889999999999999999765443 444 46799999999999999999999877 69999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...+.++++.++++|++.+....+..++++++++|+.. .|+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999887777644 567888899999999999999999999999999999999753 46666543
Q ss_pred ccccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCC----chhhhHhHHHHHHHHHHHHHHh
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLN----PYGLYAYDTVWMIARALKLFLD 330 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~----~~~~~~yDav~~~a~Al~~~~~ 330 (549)
...... ........|++....+.+ ..+..++|.++|+++++. .+. .++...|||++++++|++++..
T Consensus 234 ~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~p~~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 234 GGPDLI-----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR--PENFIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp CSHHHH-----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC--CHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC--CcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 221000 122345778877765533 245678999999998873 333 3368899999999999999754
Q ss_pred cCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhcc----cc-------ccceeeEEccCCCCCCCceEEEEE
Q 008904 331 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN----MT-------GLSGPIHFNQDRSLLHPSYDIINV 399 (549)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~----f~-------g~tG~v~fd~~g~r~~~~~~I~~~ 399 (549)
.++. .++..|.++|++++ |+ |++|++.|+++|++....+.|+++
T Consensus 307 ~~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~ 361 (392)
T 3lkb_A 307 RFKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEA 361 (392)
T ss_dssp HHSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEE
T ss_pred cCCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEE
Confidence 2111 14889999999997 98 999999999988876677899999
Q ss_pred eeCceeeEEeEeeCCCCC
Q 008904 400 IEHGYPQQIGYWSNYSGL 417 (549)
Q Consensus 400 ~~~~~~~~VG~w~~~~~l 417 (549)
+++.+ +.|+.|....++
T Consensus 362 ~~g~~-~~v~~w~~~~~~ 378 (392)
T 3lkb_A 362 KGGRF-VPVTEPFTSALF 378 (392)
T ss_dssp ETTEE-EECSCCBCCHHH
T ss_pred eCCEE-EEeccccchhHH
Confidence 76555 999999876544
No 29
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.1e-36 Score=301.69 Aligned_cols=337 Identities=17% Similarity=0.215 Sum_probs=268.4
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
..+++|+||+++|++.+ .|.....++++|+++||+.+|++ |++|+++++|++++|..+++.+.+|+.+ ++.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 35789999999999854 47788999999999999999996 9999999999999999999999999977 7899999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC-cEEEEEEec-CCcccch
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW-GEVIAIFND-DDQGRNG 175 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W-~~v~ii~~~-~~~g~~~ 175 (549)
|.+|..+.++++++..+++|+|+++++++.+++ .++|+||+.|++..++.++++++.+.+| +++++++++ ++||...
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999888887765 4578999999999999999999877554 555555544 3477665
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.+.+. ++.|++++....++.. ..|+..++.+++++++++|++.+...++..++++++++|+..+ |+..+.
T Consensus 161 ~~~~~---~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 230 (353)
T 4gnr_A 161 AKSFR---ESYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG 230 (353)
T ss_dssp HHHHH---HHCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG
T ss_pred HHHHH---HHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc
Confidence 55554 3457888888888865 6789999999999999999999999999999999999998643 555543
Q ss_pred cccccCCCCcCChhhHhhccceEEEeEec---CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 008904 256 LSTFIDSKSPLSLKTAKSILGALTLRQHT---PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (549)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 332 (549)
+...... .........|.+....+. +..+..++|.+.|+++++ ..++.++...|||++++++|++++.
T Consensus 231 ~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~la~Ai~~a~--- 301 (353)
T 4gnr_A 231 FNGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--EEPSTFAALAYDSVHLVANAAKGAK--- 301 (353)
T ss_dssp GCSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred cccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHHHHhcCC---
Confidence 3321000 001123455666555433 345778999999999997 5678899999999999999986420
Q ss_pred CCccccCCccccCCCCCccccCCccccCchHHHHHHHHhc-cccccceeeEEccCCCCCCCceEEEEEeeCceeeEEe
Q 008904 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIG 409 (549)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG 409 (549)
++..+.++|+++ .|+|++|+++||++|++. ..+.|++++++.+ +.+.
T Consensus 302 ----------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~-~~~~ 349 (353)
T 4gnr_A 302 ----------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKV-EAAE 349 (353)
T ss_dssp ----------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEE-EEEE
T ss_pred ----------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEE-EEEE
Confidence 367899999988 599999999999999864 5677888865433 5553
No 30
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=8.6e-37 Score=303.88 Aligned_cols=344 Identities=10% Similarity=0.099 Sum_probs=284.7
Q ss_pred CCceEEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
..++|+||+++|++. ..|.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++.+ +|.+||||
T Consensus 2 t~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~ 80 (364)
T 3lop_A 2 SLADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTV 80 (364)
T ss_dssp ---CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECC
T ss_pred CCCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEec
Confidence 357899999999974 346678899999999999999996 8999999999999999999999999986 99999999
Q ss_pred CCchHHHHHHH--hhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 99 QSAVMAHVLSH--LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~--~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
.++..+.++++ ++...++|+|++.++.+.+++ ++++||+.|++..++.++++++.++||++|++|+.++++|....
T Consensus 81 ~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~ 158 (364)
T 3lop_A 81 VGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAI 158 (364)
T ss_dssp CCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHH
T ss_pred CCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHH
Confidence 99999999999 999999999998777766655 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ |+..+.+
T Consensus 159 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~ 231 (364)
T 3lop_A 159 TGVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSI 231 (364)
T ss_dssp HHHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTS
T ss_pred HHHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccC
Confidence 99999999999998876666644 5678889999999999999999999999999999999998643 6666544
Q ss_pred ccccCCCCcCChhhH-hhccceEEEeE----ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 257 STFIDSKSPLSLKTA-KSILGALTLRQ----HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
...... .... ....|++.... .....+..++|.+.|+++++....++.++...|||+++++.|++++..
T Consensus 232 ~~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag~- 305 (364)
T 3lop_A 232 DPGILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGP- 305 (364)
T ss_dssp CHHHHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred ChHHHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhCC-
Confidence 321100 1222 45677776542 224668899999999998874336788899999999999999998621
Q ss_pred CCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhc-cccc-cceeeEEccCCCCCCCceEEEEEeeCceeeEEe
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTG-LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIG 409 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g-~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG 409 (549)
. . ++..|.++|+++ .|+| .+|++.|++++++......|.+++.++++..-|
T Consensus 306 --~------------------------~-~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~ 358 (364)
T 3lop_A 306 --K------------------------P-TREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVIQEG 358 (364)
T ss_dssp --S------------------------C-CHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEEEC-
T ss_pred --C------------------------C-CHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcccccc
Confidence 0 1 488999999999 6999 999999999887665667777777666644444
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=3.7e-37 Score=307.49 Aligned_cols=332 Identities=14% Similarity=0.100 Sum_probs=267.6
Q ss_pred CceEEEEEEeccCCC---CchHHHHHHHHHHHHHHc-CCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINS-DPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~-~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
.++|+||+++|++.. .|.....++++|++++|+ .+++ .|++|+++++|+++++..+++.+++|+.+ +|.+||||
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~ 80 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 80 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 358999999999854 467889999999999998 6777 49999999999999999999999999985 99999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
.+|..+.+++++++.+++|+|++.++++.+++. .+||+||+.|++..++.+++.++++++| +|++|+.+++||....+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~ 159 (374)
T 3n0x_A 81 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVA 159 (374)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHH
Confidence 999999999999999999999987777777763 5899999999999999999988888998 79999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-----CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-----ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+.+++.|++|+....++.. ..++..++.+|++++ +++|++.+..... .+.++.++++...++.++.
T Consensus 160 ~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~ 233 (374)
T 3n0x_A 160 AFKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELST 233 (374)
T ss_dssp HHHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEE
T ss_pred HHHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeee
Confidence 9999999999999988877754 668899999999888 9999887433211 2345555555444555554
Q ss_pred eCCcccccCCCCcCChhhHhhccceEEEeEe---cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHH
Q 008904 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFL 329 (549)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 329 (549)
.+...... .......|+.+...+ .+..+..++|.++|+++++ ..++.++...|||++++++|++++.
T Consensus 234 ~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 234 GGNILPAL--------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--APPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp CCCCTTGG--------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhh--------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--CCCChhHHHHHHHHHHHHHHHHHhC
Confidence 43221110 111334555554432 3456788999999999987 5678889999999999999999862
Q ss_pred hcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC
Q 008904 330 DQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
. . ++..|.++|++++|+|++|+++|++++++....+.|++++..
T Consensus 304 ~----------------------------~-~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 304 S----------------------------T-DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp S----------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred C----------------------------C-CHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 1 1 488999999999999999999999644345678889988743
No 32
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=4.1e-36 Score=299.51 Aligned_cols=347 Identities=17% Similarity=0.165 Sum_probs=285.5
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 98 (549)
+.++|+||+++|++.. .|.....++++|++++|. ++ +|++|++++.|+++++..+.+.+.+++. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4679999999999743 366789999999999974 24 5899999999999999999999999998 799999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
.+|..+.++++++...++|+|++.++++.+++. +|++||+.|++..++.++++++.++||++|++|+.++.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999988777666654 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+.+.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..++..|+.++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999887777644 5578889999999899999998888899999999999998765577888874332
Q ss_pred ccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
.... ........|++...++.+ ..+..++|.+.| ++++. ..++.++...|||++++++|++++...
T Consensus 235 ~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-~~p~~~~~~~yda~~~~~~al~~~g~~----- 302 (368)
T 4eyg_A 235 DDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG-QRPGFMAVGGYDGIHLVFEALKKTGGK----- 302 (368)
T ss_dssp HHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS-SCCCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC-CCCChHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 1111 011245678777665543 458899999999 77732 367888999999999999999985210
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEc-cCCCCCCCceEEEEEe-eCcee--eEEeEee
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN-QDRSLLHPSYDIINVI-EHGYP--QQIGYWS 412 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd-~~g~r~~~~~~I~~~~-~~~~~--~~VG~w~ 412 (549)
. ++..|.++|++++|+|++|++.|| ++|++ ...+.|++++ .++.| +.++.|.
T Consensus 303 ----------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~~ 358 (368)
T 4eyg_A 303 ----------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFAKFD 358 (368)
T ss_dssp ----------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ----------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEeeccc
Confidence 1 488999999999999999999999 67764 5678888887 23433 4455554
Q ss_pred C
Q 008904 413 N 413 (549)
Q Consensus 413 ~ 413 (549)
+
T Consensus 359 ~ 359 (368)
T 4eyg_A 359 A 359 (368)
T ss_dssp E
T ss_pred c
Confidence 3
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=7.7e-35 Score=292.26 Aligned_cols=343 Identities=15% Similarity=0.194 Sum_probs=274.7
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
...++|+||+++|++.. .|.....++++|++++| |+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 23 ~a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 95 (386)
T 3sg0_A 23 AAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIG 95 (386)
T ss_dssp --CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred cCCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEC
Confidence 45679999999999854 45677889999998873 7899999999999999999999999987 8999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCC--CCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccch
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls--~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~ 175 (549)
|.++..+.++.+++...++|+|++.++++.++ ...++++||+.|++..++.++++++.++||++|++|+.++.+|...
T Consensus 96 ~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~ 175 (386)
T 3sg0_A 96 SSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGY 175 (386)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHH
Confidence 99999999999999999999999987776666 3468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ ++..+.
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 248 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHG 248 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGG
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccc
Confidence 999999999999998866666644 4577888999999999999999988889999999999998632 555543
Q ss_pred cccccCCCCcCChhhHhhccceEEEeEe------cC-CC---hhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHH
Q 008904 256 LSTFIDSKSPLSLKTAKSILGALTLRQH------TP-DS---KRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARAL 325 (549)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 325 (549)
+...... ........|++....+ .+ .. +..++|.+.|+++++. ..++.++...||+++++++|+
T Consensus 249 ~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al 322 (386)
T 3sg0_A 249 VATEEFI-----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-AAPTIFGVHLWDSMTLVENAI 322 (386)
T ss_dssp GCSHHHH-----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH-----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHHHHH
Confidence 3221000 1223456777765431 12 22 4578999999999873 256788999999999999999
Q ss_pred HHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhc-cccccceeeEEccCCCC--CCCceEEEEEeeC
Q 008904 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEH 402 (549)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~fd~~g~r--~~~~~~I~~~~~~ 402 (549)
+++.+.... +.+.++..+.++|+++ +|+|++|++.|++++++ ....+.|++++++
T Consensus 323 ~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 380 (386)
T 3sg0_A 323 PAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDG 380 (386)
T ss_dssp HHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECC
Confidence 998654310 0122478999999999 89999999999886543 2345788888754
Q ss_pred ceeeE
Q 008904 403 GYPQQ 407 (549)
Q Consensus 403 ~~~~~ 407 (549)
.+ +.
T Consensus 381 ~~-~~ 384 (386)
T 3sg0_A 381 AF-RL 384 (386)
T ss_dssp EE-EE
T ss_pred EE-Ee
Confidence 44 44
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=3.6e-33 Score=279.80 Aligned_cols=348 Identities=14% Similarity=0.066 Sum_probs=274.8
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 98 (549)
..++++||+++|++.. .+.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++. ++|++|||+
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 4568999999998643 46677899999999999999996 899999999999999999999999997 799999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
.++..+.++.+++...++|+|++..... ...++++||+.+++..++..+++++.+.+|++|++|+.++.++....+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9988888889999999999999755321 1235789999999999999999999999999999999988888888899
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+++.+++.|+++.....++.. ....++...++++++.++++|++.+....+..++++++++|+....+.++..++...
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 999999999998865555531 246788889999988889999998878889999999999998644444554433221
Q ss_pred ccCCCCcCChhhHhhccceEEEeEec--CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHT--PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
.+.. .......|++...++. ...+..++|.+.|+++++....++.++..+|||++++++|++++..
T Consensus 238 ~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~------ 305 (385)
T 1pea_A 238 EVAK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGN------ 305 (385)
T ss_dssp HHTT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred HHHh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCC------
Confidence 1111 0113567877766543 3467889999999998874335677899999999999999998621
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEe
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w 411 (549)
. ++..|.++|++++|+|++|+++||+++++....+.|.++..++.|+.|...
T Consensus 306 ----------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 ----------------------W-RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ----------------------C-CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ----------------------C-CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 1 388999999999999999999999865444566788888433443666543
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=3.2e-33 Score=277.93 Aligned_cols=340 Identities=16% Similarity=0.145 Sum_probs=272.5
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
..++|+||+++|++.. .|.....++++|++++| |+++++++.|+++++..+.+.+.+++.+ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 5678999999999754 35667889999999873 7899999999999999999999999998 89999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
.++..+.++.+++...++|+|++.++ + +....++++||+.|++..++..+++++.++||++|++|+.++.++....+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998766 4 333467999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ ++....+..
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~ 227 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAAS 227 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCS
T ss_pred HHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCc
Confidence 999999999998877666644 4567788889988899999998888899999999999998643 455443322
Q ss_pred ccCCCCcCChhhHhhccceEEEeEe----------cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHH
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQH----------TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLF 328 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 328 (549)
.... ........|++....+ .+..+..++|.+.|+++++. ..++.++...|||++++++|++++
T Consensus 228 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al~~a 301 (362)
T 3snr_A 228 MDFI-----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-SSRSQFAGHSYDAFKVLERVVPVA 301 (362)
T ss_dssp HHHH-----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-CCCCchhHhHHHHHHHHHHHHHHh
Confidence 1000 1223456787765531 12235689999999998873 256888999999999999999998
Q ss_pred HhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhc-cccccceeeEEccCCCC--CCCceEEEEEeeCcee
Q 008904 329 LDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEHGYP 405 (549)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~fd~~g~r--~~~~~~I~~~~~~~~~ 405 (549)
.+.... +.+.++..|.++|+++ +|+|++|+++|++++++ ....+.|++++++.+
T Consensus 302 ~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~- 358 (362)
T 3snr_A 302 LKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKY- 358 (362)
T ss_dssp HHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEE-
T ss_pred hccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEE-
Confidence 654210 0122478999999999 89999999999987443 245678888875444
Q ss_pred eE
Q 008904 406 QQ 407 (549)
Q Consensus 406 ~~ 407 (549)
+.
T Consensus 359 ~~ 360 (362)
T 3snr_A 359 VI 360 (362)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.94 E-value=3.5e-26 Score=220.78 Aligned_cols=307 Identities=10% Similarity=0.051 Sum_probs=233.0
Q ss_pred EEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 28 NVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
+||+++|++.. .|...+.++++|. .|++++++++|+.+++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 69999999854 5778899999886 3789999999999987 5666778888899999999999999
Q ss_pred HHHHHhh-hhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 105 HVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 105 ~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
.++++.+ ...++|+|++.+++. .....+.|+||+.| ..+++++++++...|.+++++|+.+++||+...+.|++.+
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 778999999765432 22223446666554 4578999999988999999999999999999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc--cccC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS--TFID 261 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~--~~~~ 261 (549)
++.|++|+..+.+... .|+...|+++ ..++++|++.+...++..+.++++..+. +-..+.++.+. ....
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~---~~pl~~~~~~~~~s~~~ 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVP---NLAIYASSRASASATNT 217 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHHHT
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCC---CCCEEEeccccccCCCC
Confidence 9999999888777632 5889999988 4789999999998888888888776543 33456665554 2211
Q ss_pred CCCcCChhhHhhccceEEEeE---ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 262 SKSPLSLKTAKSILGALTLRQ---HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
. .......+|++.... ..++.+.+++|.+.|+..+ .+....++.|||+.++++. .++.
T Consensus 218 ~-----~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l~--------- 278 (325)
T 2h4a_A 218 N-----TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NELR--------- 278 (325)
T ss_dssp C-----HHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHHH---------
T ss_pred C-----chhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHHh---------
Confidence 1 233457788876542 2345567888888776433 2445578999999986553 3321
Q ss_pred CCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEE
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~V 408 (549)
.+.+..|.|+||.++||++|+. .....+.+++++.+ +.|
T Consensus 279 -----------------------------~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G~~-~~~ 317 (325)
T 2h4a_A 279 -----------------------------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAI-VPV 317 (325)
T ss_dssp -----------------------------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEE-EEC
T ss_pred -----------------------------hCCCCeeccCceeEEECCCCeE-EEeechhhccCCeE-EEe
Confidence 1333579999999999999974 56778888875554 544
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.94 E-value=3e-26 Score=223.71 Aligned_cols=313 Identities=10% Similarity=0.041 Sum_probs=230.7
Q ss_pred EEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 27 LNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 27 i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
+|||+++|++.. .|...+.++++|++ |++++++++|+.++|..++ ...+.+++|.+||||.+|..
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 689999999854 46778888888862 5678999999999987653 34455679999999999988
Q ss_pred HHHHHHhh-hhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.+++... ....+|+++.++++.. ...+++||+.+++..++.++++++...+++++++++.+++||....+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCccc---ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 87766654 5556676664433322 2347899999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|++|+....++.. +....+.+++..++++|++.....++..++++++++|+. ..++.++.+......
T Consensus 148 ~~~~Gg~vv~~~~~~~~------~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~---~~~~~~~~~~~~~~~ 218 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNLP------ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPN---LAIYASSRASASATN 218 (327)
T ss_dssp HHHHHSSCCEEEEESST------THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHH
T ss_pred HHHCCCeEEEEEECCCC------chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhcc---CCEEeeeccccccch
Confidence 99999999888877644 233456778889999999999999999999999988754 346665543322111
Q ss_pred CCcCChhhHhhccceEEEeE---ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 263 KSPLSLKTAKSILGALTLRQ---HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.. ........|++.... ..+..+.++.|.++|+..++ ...+.++.|||+.+++++.+..
T Consensus 219 ~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~AlgyDA~~l~~~l~~~~----------- 280 (327)
T 3ckm_A 219 TN---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFNELR----------- 280 (327)
T ss_dssp TC---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHHHHH-----------
T ss_pred hc---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----CCchHHHHHHHHHHHHHHHHhc-----------
Confidence 00 122234556655433 24556788889888876653 2235678999998876543321
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEe
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w 411 (549)
.+....|.|+||.++||++|+ ....+.+.+++++.+ ++|...
T Consensus 281 ----------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~-vpv~d~ 322 (327)
T 3ckm_A 281 ----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPVVDH 322 (327)
T ss_dssp ----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EECC--
T ss_pred ----------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEE-EEcccc
Confidence 122346999999999999997 456777888876554 777643
No 38
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.13 E-value=3.2e-11 Score=115.02 Aligned_cols=82 Identities=13% Similarity=0.330 Sum_probs=64.6
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC------CC----CChHHHHHhHhc
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KN----PTYSELINQITT 531 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~------~~----g~~~gl~~~l~~ 531 (549)
++++|++.. .|+|+.... .+++++|||+||+++|++.+||+ |+++.++||+ .+ ++|++++++|.+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~-~~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~ 115 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHT-VPQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLS 115 (292)
T ss_dssp CEEEEEEC----------CE-EEEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHH
T ss_pred ceeecccCC--CCCCccccc-cccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHc
Confidence 567776543 344443332 36789999999999999999999 9999999987 22 489999999999
Q ss_pred CcccEEecceEEeeccc
Q 008904 532 GVSRILTKKVAQLTRVS 548 (549)
Q Consensus 532 ~~~d~~~~~~ti~~~r~ 548 (549)
|++|++++++++|++|+
T Consensus 116 g~~D~~~~~~~~t~~R~ 132 (292)
T 1pb7_A 116 GQADMIVAPLTINNERA 132 (292)
T ss_dssp TSCSEECSSCBCCHHHH
T ss_pred CCcCEEEeeeEecHHHh
Confidence 99999999999999996
No 39
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.08 E-value=3.8e-11 Score=114.68 Aligned_cols=61 Identities=23% Similarity=0.465 Sum_probs=57.6
Q ss_pred eeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC----CCCChHHHHHhHhcCcccEEecceEEeeccc
Q 008904 486 IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 486 ~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~----~~g~~~gl~~~l~~~~~d~~~~~~ti~~~r~ 548 (549)
+++|||+||+++|++.+||+ |+++.++||+ .+++|++++++|.+|++|++++++++|++|+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~ 131 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARS 131 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHH
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHh
Confidence 58999999999999999999 9999999987 5679999999999999999999999999996
No 40
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.01 E-value=1.7e-10 Score=109.55 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCCeEEEeecCcccccccEEee---cCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC----CCCChHHHHHhHhcC
Q 008904 460 NGRQLRIGVPNRVSYRDFVFKV---NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQITTG 532 (549)
Q Consensus 460 ~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~----~~g~~~gl~~~l~~~ 532 (549)
.+++|||+++...+|++|.... ...+++.|||+||++++++.||++ |+++.++||+ .+++|++++.+|.+|
T Consensus 27 ~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 27 TETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp -CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 4688888888766666552211 113478999999999999999999 9999999876 467999999999999
Q ss_pred cccEEecceEEeeccc
Q 008904 533 VSRILTKKVAQLTRVS 548 (549)
Q Consensus 533 ~~d~~~~~~ti~~~r~ 548 (549)
++|++++++++|++|+
T Consensus 105 ~~D~~~~~~~~t~~R~ 120 (284)
T 2a5s_A 105 RAVMAVGSLTINEERS 120 (284)
T ss_dssp SCSEECSSCBCCHHHH
T ss_pred CcCEEEEEEEEecccc
Confidence 9999999999999996
No 41
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.94 E-value=5.2e-10 Score=103.52 Aligned_cols=76 Identities=16% Similarity=0.356 Sum_probs=68.2
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC-CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l-~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|+|++.. .|+||.+.+ .++++.||++||+++++++| |++ ++++.. .|++++..|.+|++|++++
T Consensus 8 ~~tl~vg~~~--~~pP~~~~d-~~G~~~G~~vdl~~~ia~~l~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 75 (243)
T 4gvo_A 8 VQTITVGTGT--QFPNVCFLD-ENGKLTGYDVELVKEIDKRLPGYK--FKFKTM-------DFSNLLVSLGAGKVDIVAH 75 (243)
T ss_dssp CEEEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHTCTTEE--EEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEECC--CCCCeEEEC-CCCcEEEhHHHHHHHHHHhccCCe--EEEEEC-------CHHHHHHHHHCCCCCEecc
Confidence 4789999854 678887765 46789999999999999998 899 999999 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|++|+
T Consensus 76 ~~~~t~eR~ 84 (243)
T 4gvo_A 76 QMEKSKERE 84 (243)
T ss_dssp CCBCCHHHH
T ss_pred cCCCCHHHh
Confidence 999999996
No 42
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=98.90 E-value=1.3e-09 Score=101.83 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCeEEEeecCcccccccEEeecC------cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC---C---CCChHHHHHh
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH---K---NPTYSELINQ 528 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~------~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~---~---~g~~~gl~~~ 528 (549)
+++|+|++... +||.+.... ++++.||++||++++++.+|++ ++++.+++++ . +++|++++..
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~p~~~~g~~~~~~~~~~~~~~~ 77 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFT--YEIRLVEDGKYGAQDDVNGQWNGMVRE 77 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCe--EEEEECCCCCcCcccCCCCcchHHHHH
Confidence 47899998754 355444432 5889999999999999999999 9999998866 1 4689999999
Q ss_pred HhcCcccEEecceEEeeccc
Q 008904 529 ITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 529 l~~~~~d~~~~~~ti~~~r~ 548 (549)
|.+|++|++++++++|++|+
T Consensus 78 l~~g~~D~~~~~~~~t~eR~ 97 (259)
T 3g3k_A 78 LIDHKADLAVAPLAITYVRE 97 (259)
T ss_dssp HHTTSCSEECSSCBCCHHHH
T ss_pred HhcCcccEEEeeeEeccccc
Confidence 99999999999999999996
No 43
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.85 E-value=1.9e-09 Score=99.66 Aligned_cols=77 Identities=18% Similarity=0.335 Sum_probs=68.6
Q ss_pred CCeEEEeecCcccccccEEe--ecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 461 GRQLRIGVPNRVSYRDFVFK--VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~--~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
.++|+|++.. .|+||.+. ..+++.+.||++||++++++.+|++ ++++.. .|++++..|.+|++|+++
T Consensus 11 ~g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 11 KGKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILSM-------SFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp HTEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred CCEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEecc-------cHHHHHHHHHcCCCCccc
Confidence 4679999854 67787664 3467889999999999999999999 999999 999999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
+++++|++|+
T Consensus 80 ~~~~~t~eR~ 89 (243)
T 4h5g_A 80 AGISATDERK 89 (243)
T ss_dssp SSCBCCHHHH
T ss_pred ccccCChhHc
Confidence 9999999996
No 44
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.78 E-value=4.9e-09 Score=98.17 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCeEEEeecCcccccccEEeecC----cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----CCCChHHHHHhHhc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNG----TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNPTYSELINQITT 531 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~----~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~~g~~~gl~~~l~~ 531 (549)
+++|+|++... +||.+.... .+++.||++||++++++.+|++ ++++.+++++ .+++|++++..|.+
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 76 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVF 76 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHT
T ss_pred CeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHHHc
Confidence 47899998654 455554331 1689999999999999999999 9999988765 24689999999999
Q ss_pred CcccEEecceEEeeccc
Q 008904 532 GVSRILTKKVAQLTRVS 548 (549)
Q Consensus 532 ~~~d~~~~~~ti~~~r~ 548 (549)
|++|++++++++|++|+
T Consensus 77 g~~D~~~~~~~~t~~R~ 93 (265)
T 2v3u_A 77 KRADIGISALTITPDRE 93 (265)
T ss_dssp TSCSEECSSCBCCHHHH
T ss_pred CCcCeEEeeeEeehhhh
Confidence 99999999999999996
No 45
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.77 E-value=4.5e-09 Score=101.15 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=70.5
Q ss_pred CCCeEEEeecCcccccccEEeec------CcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----C-CCChHHHHH
Q 008904 460 NGRQLRIGVPNRVSYRDFVFKVN------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----K-NPTYSELIN 527 (549)
Q Consensus 460 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~-~g~~~gl~~ 527 (549)
..++|+|++... +||..... +++++.||++||++++++.+|++ |+++.++|++ . +++|++++.
T Consensus 11 ~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (312)
T 1yae_A 11 SNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKYGAQDDVNGQWNGMVR 85 (312)
T ss_dssp CSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCE--EEEEECSSCCCCCBCTTTCCBCSHHH
T ss_pred cCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCe--EEEEecCCCccceeccCCCcchHHHH
Confidence 357899998653 45554431 46789999999999999999999 9999888765 1 579999999
Q ss_pred hHhcCcccEEecceEEeeccc
Q 008904 528 QITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 528 ~l~~~~~d~~~~~~ti~~~r~ 548 (549)
.|.+|++|++++++++|++|+
T Consensus 86 ~l~~g~~D~~~~~~~~t~eR~ 106 (312)
T 1yae_A 86 ELIDHKADLAVAPLAITYVRE 106 (312)
T ss_dssp HHHTTSCSEECSSCBCCHHHH
T ss_pred HHhCCCcCEEeecceechhhc
Confidence 999999999999999999995
No 46
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.74 E-value=9.9e-09 Score=96.01 Aligned_cols=83 Identities=14% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCeEEEeecCcccccccEEeecC------cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----CCC-ChHHHHHh
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNP-TYSELINQ 528 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~------~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~~g-~~~gl~~~ 528 (549)
+++|+|++.. |+||.+.... ++.+.||++||++++++.+|++ ++++..+++. .++ .|++++..
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGE 77 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHHH
Confidence 4678998854 5666665432 4789999999999999999999 9999987644 233 89999999
Q ss_pred HhcCcccEEecceEEeeccc
Q 008904 529 ITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 529 l~~~~~d~~~~~~ti~~~r~ 548 (549)
|.+|++|++++++++|++|+
T Consensus 78 l~~g~~D~~~~~~~~t~~R~ 97 (263)
T 1mqi_A 78 LVYGKADIAIAPLTITLVRE 97 (263)
T ss_dssp HHTTSCSEECSSCBCCHHHH
T ss_pred HHcCCcCEEEEeeEecHHHH
Confidence 99999999999999999996
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.68 E-value=1.5e-08 Score=92.79 Aligned_cols=76 Identities=11% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.+.. .++.+.||++||++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIN-DAGEVDGFERELGDELCKRAGLT--CEWVKN-------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCC--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCCCEEEeC
Confidence 4679999863 677887654 36789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 72 ~~~t~~r~ 79 (232)
T 3i6v_A 72 MSITDERD 79 (232)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHH
Confidence 99999986
No 48
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=98.53 E-value=6.9e-08 Score=88.68 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=67.3
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||..... ++...||++||++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 14 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAK--LVVVPT-------SWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCc--eEEEEe-------CHHHHHHHHHCCCcCEEEeC
Confidence 4789999853 5677776543 6789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 82 ~~~t~~r~ 89 (239)
T 3kbr_A 82 ISINLERQ 89 (239)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHc
Confidence 99999986
No 49
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.51 E-value=9.6e-08 Score=87.63 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=66.9
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. .|+||......++.+.||++||++++++.+|++ ++++.. +|+.++..|.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGNNSSLYGFDIDLMQEICRRLHAT--CTFEAY-------IFDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp CEEEEEEES--EETTTEECCCTTSCCBSHHHHHHHHHHHHTTCE--EEEEEE-------CGGGHHHHHHTTSSSEECSSC
T ss_pred ceEEEEECC--CCCCeEEEeCCCCCEeeehHHHHHHHHHHhCCc--eEEEEc-------CHHHHHHHHhCCCCCEEEEcc
Confidence 678998863 577887651246789999999999999999999 999999 899999999999999999999
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
++|++|+
T Consensus 72 ~~~~~r~ 78 (237)
T 3kzg_A 72 IITDERK 78 (237)
T ss_dssp BCCTTGG
T ss_pred ccChhHh
Confidence 9999986
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=98.48 E-value=1.3e-07 Score=87.29 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=67.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++.+.||++||++++++.+|++ ++++.. +|..++..|.+|++|+++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKD-KKGNVIGFDVDLAREMAKAMGVK--LKLVPT-------SWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEE-TTTEEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEECC--CcCCeeEEC-CCCCCccchHHHHHHHHHHhCCe--EEEEEc-------cHHHHHHHHhCCCcCEEEec
Confidence 4789999863 567776654 36789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 72 ~~~t~~r~ 79 (245)
T 3k4u_A 72 MTISQERN 79 (245)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHH
Confidence 99999985
No 51
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=98.47 E-value=2e-07 Score=84.63 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=64.7
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. .|+||.... .++...||++|+++++++.+|++ ++++.. +|..++..|.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMG-PSGQVEGFGADIVKAVCKQMQAV--CTISNQ-------PWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCE--EEEEEC-------CHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEEC-CCCCcccchHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhCCCCCEEEecC
Confidence 578888854 567776643 36779999999999999999999 999998 999999999999999999999
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
+.|++|+
T Consensus 70 ~~~~~r~ 76 (227)
T 3tql_A 70 NITTARQ 76 (227)
T ss_dssp BCCTTGG
T ss_pred cCCHhHH
Confidence 9999986
No 52
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=98.44 E-value=1.8e-07 Score=85.84 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++.+.||++||++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKD-AKGEFIGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEEC-CCCCEeeEHHHHHHHHHHHHCCe--EEEEeC-------CHHHHHHHHhCCCCCEEEEC
Confidence 4678998842 567776654 35789999999999999999999 999998 99999999999999999998
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 71 ~~~t~~r~ 78 (239)
T 1lst_A 71 LSITDKRQ 78 (239)
T ss_dssp CBCCHHHH
T ss_pred cCcCHHHh
Confidence 99999885
No 53
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.42 E-value=1.9e-07 Score=85.92 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||..... ++.+.||++||++++++.+|++ ++++.. .|+.++..|.+|++|+++++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKT--LDVREF-------SFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCc--eEEEEc-------CHHHHHHHHhCCCcCEEEec
Confidence 4789999843 5677766543 6789999999999999999999 999999 89999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 78 ~~~~~~r~ 85 (242)
T 3del_B 78 MSITPSRL 85 (242)
T ss_dssp BBCCHHHH
T ss_pred CcCCHHHH
Confidence 99999885
No 54
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.42 E-value=2.1e-07 Score=87.20 Aligned_cols=76 Identities=11% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.+.. .++.+.||++||++++++.+|++ ++++.. .|+.++..|.+|++|+++++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 87 (268)
T 3hv1_A 20 EKKIKIGFDA--TFVPMGYEE-KDGSYIGFDIDLANAVFKLYGID--VEWQAI-------DWDMKETELKNGTIDLIWNG 87 (268)
T ss_dssp HTEEEEEECT--EETTTEEEC-TTSCEECHHHHHHHHHHHTTTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCcEEEEECC--CCCCceEEC-CCCCEEEehHHHHHHHHHHhCCc--EEEEEC-------CHHHHHHHHHCCCCCEEEec
Confidence 4789999864 677887654 36789999999999999999999 999999 89999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 88 ~~~t~~r~ 95 (268)
T 3hv1_A 88 YSVTDERK 95 (268)
T ss_dssp CBCCHHHH
T ss_pred CccCHHHH
Confidence 99999985
No 55
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=98.40 E-value=2.4e-07 Score=86.94 Aligned_cols=77 Identities=10% Similarity=0.209 Sum_probs=66.6
Q ss_pred CCeEEEeecCcccccccEEeecCc--ceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGT--DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
.++|+|++.. .|+||.....++ +.+.||++|+++++++.+|++ ++++.. +|+.++..|.+|++|+++
T Consensus 20 ~~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~ 88 (271)
T 2iee_A 20 KGKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLK--VEFKEM-------GIDGMLTAVNSGQVDAAA 88 (271)
T ss_dssp HTEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCE--EEEEEC-------CSTTHHHHHHHTSSSEEC
T ss_pred CCeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCe--EEEEEC-------CHHHHHHHHHCCCcCEEE
Confidence 4679999853 567776654321 789999999999999999999 999999 999999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
+++++|++|+
T Consensus 89 ~~~~~t~~r~ 98 (271)
T 2iee_A 89 NDIDVTKDRE 98 (271)
T ss_dssp SSCBCCHHHH
T ss_pred eCCcCChhhc
Confidence 9999999985
No 56
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.40 E-value=2.4e-07 Score=85.68 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=65.8
Q ss_pred CCCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 460 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
..++|+|++.. .|+||... .++...||++||++++++.+|++ ++++.. +|..++..|.+|++|++++
T Consensus 22 ~~~~l~v~~~~--~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 22 MAKELVVGTDT--SFMPFEFK--QGDKYVGFDLDLWAEIAKGAGWT--YKIQPM-------DFAGLIPALQTQNIDVALS 88 (249)
T ss_dssp --CCEEEEEES--CBTTTBEE--ETTEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSCSEEEE
T ss_pred cCceEEEEeCC--CCCCeEEe--cCCeEEEEhHHHHHHHHHHcCCc--eEEEec-------CHHHHHHHHHCCCCCEEEe
Confidence 35789999863 56777665 46789999999999999999999 999999 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
+++.|++|+
T Consensus 89 ~~~~~~~r~ 97 (249)
T 4f3p_A 89 GMTIKEERR 97 (249)
T ss_dssp EEECCHHHH
T ss_pred ccccCHHHH
Confidence 999999885
No 57
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=98.39 E-value=3.4e-07 Score=85.27 Aligned_cols=76 Identities=13% Similarity=0.322 Sum_probs=66.8
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+||.... .++.+.||++|+++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 28 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 28 GRTLNVAVSP--ASPPMLFKS-ADGKLQGIDLELFSSYCQSRHCK--LNITEY-------AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp TCEEEEEECC--CBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHHTSSSEEEEE
T ss_pred CCeEEEEECC--CCCCeEEEC-CCCCEEEeHHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCCCEEEEC
Confidence 4789998853 567776654 46789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 96 ~~~t~~r~ 103 (259)
T 4dz1_A 96 ISITDKRK 103 (259)
T ss_dssp EECCHHHH
T ss_pred CcCCHHHh
Confidence 99999986
No 58
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.39 E-value=1.5e-05 Score=75.57 Aligned_cols=213 Identities=9% Similarity=-0.007 Sum_probs=127.7
Q ss_pred CCCceEEEEEEecc---CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC
Q 008904 22 LKPEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 98 (549)
Q Consensus 22 ~~~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp 98 (549)
......+||+++|. +..+......+++.+.++ .|+++ .+.+...++....+....++.+++++||..
T Consensus 15 ~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~ 84 (296)
T 3brq_A 15 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEE--------KGRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIY 84 (296)
T ss_dssp ----CCEEEEEECGGGCC--CHHHHHHHHHHHHHH--------TTCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHH--------CCCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 34567899999986 344444556666666655 25554 445666677666666777778899988864
Q ss_pred CCchHHHHHHHhhhh-cCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccch
Q 008904 99 QSAVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNG 175 (549)
Q Consensus 99 ~~s~~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~ 175 (549)
........+. .+.. .++|+|.+....+ + +.+..+.++....+..+++.|...|.+++++|..+.. .+...
T Consensus 85 ~~~~~~~~~~-~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R 157 (296)
T 3brq_A 85 PRFLSVDEID-DIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIER 157 (296)
T ss_dssp CSSSCHHHHH-HHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHH
T ss_pred cCCCChHHHH-HHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHH
Confidence 3322223333 3445 7999998753221 1 2233455667777788888888889999999986532 34456
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEE
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIA 252 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~ 252 (549)
.+.|.+.+++.|+.+.....+... ....+....++++.+. .++.|+. .+...+..+++++++.|+..++ ...++
T Consensus 158 ~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg 234 (296)
T 3brq_A 158 LAGYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIG 234 (296)
T ss_dssp HHHHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 677888888888765322111211 1233334455555433 4566554 4555677888999999986543 33444
Q ss_pred eC
Q 008904 253 TT 254 (549)
Q Consensus 253 ~~ 254 (549)
.+
T Consensus 235 ~d 236 (296)
T 3brq_A 235 FD 236 (296)
T ss_dssp ES
T ss_pred ec
Confidence 43
No 59
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=98.38 E-value=1.7e-07 Score=86.30 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCC-CCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLP-YAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~-~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|+|++.. .|+||... .++...||++||++++++.+| ++ ++++.. +|+.++..|.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE--ENGELTGYEIEVVRAIFKDSDKYD--VKFEKT-------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE--ETTEEESHHHHHHHHHHTTCSSEE--EEEEEC-------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEc--CCCCCcccHHHHHHHHHHHcCCce--EEEEeC-------CHHHHHHHHhCCCcCEEec
Confidence 4779999864 56677663 467899999999999999999 99 999999 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|++|+
T Consensus 74 ~~~~~~~r~ 82 (246)
T 4eq9_A 74 NLSYTKERA 82 (246)
T ss_dssp SCCCCHHHH
T ss_pred ccccChhhh
Confidence 999999885
No 60
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.37 E-value=2.5e-05 Score=73.06 Aligned_cols=209 Identities=10% Similarity=-0.030 Sum_probs=132.4
Q ss_pred EEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEcCC-CchH
Q 008904 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVGPQ-SAVM 103 (549)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~-v~aiiGp~-~s~~ 103 (549)
++||+++|.. ..+......+++.+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 5899999864 333344556666666652 56666655446667777777788888888 99998644 3334
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc----CCcEEEEEEecC--CcccchHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF----GWGEVIAIFNDD--DQGRNGVT 177 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~----~W~~v~ii~~~~--~~g~~~~~ 177 (549)
.......+...++|+|.+....+ +. +....+.+.....++.+++.+... |-++++++.... .......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA---GD--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC---CC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 44455566778999999754322 11 223345567777888899888887 899999997543 23445677
Q ss_pred HHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 178 ALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+.+.+++. |+.+.... ... .........++++.+. .++.|+ +.+...+..+++++++.|+ ..+...++.+
T Consensus 148 gf~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAP--YAG--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEECC--BCC--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEEe--cCC--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 888888888 88766322 111 2233444455554433 344443 3455567778999999997 3444444444
No 61
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.33 E-value=5e-05 Score=72.60 Aligned_cols=208 Identities=12% Similarity=0.044 Sum_probs=128.0
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++++||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 6899999875323334456666666552 45555432 13457777677777888889998885 44443323
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecC--CcccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~--~~g~~~~~~l~~ 181 (549)
.....+...++|+|.+....+ + .+.+..+.++....++.+++.|... |-++|++|.... .......+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSP---D--SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCT---T--SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCC---C--cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 334445568999998754322 1 1223345567777788888888877 899999998642 234456677888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+++.|+.+....... .+..+....++++.+. .++.|+. .+...+..+++++++.|.. .+...++.+
T Consensus 148 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~p-~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGKV-GKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTCT-TTSEEEEEC
T ss_pred HhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCCC-CCeEEEEeC
Confidence 8888898775432211 1233444455555433 3455554 4445677788999998843 344444444
No 62
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=98.32 E-value=5.7e-07 Score=81.47 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=63.7
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. .|+||.... ++.+.||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLD--YELKPM-------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEec--CCcEEEeeHHHHHHHHHHhCCE--EEEEEC-------CHHHHHHHHhCCCCCEEEEcC
Confidence 568888753 566776654 3689999999999999999999 999988 899999999999999999989
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
++|++|+
T Consensus 70 ~~~~~r~ 76 (226)
T 1wdn_A 70 TITDERK 76 (226)
T ss_dssp ECCHHHH
T ss_pred cCCHHHh
Confidence 9998885
No 63
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=98.29 E-value=8.4e-07 Score=80.63 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++++.||++|+++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFVD-ADNKIVGFDIDVANAVCKEMQAE--CSFTNQ-------SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEECC--CBTTTBEEC-TTSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeCC--CcCCceEEC-CCCCCcceeHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCceEEEec
Confidence 4779999852 567776543 35789999999999999999999 999998 99999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 73 ~~~~~~r~ 80 (229)
T 2y7i_A 73 MDMTPKRE 80 (229)
T ss_dssp CBCCHHHH
T ss_pred CccCHHHh
Confidence 99998885
No 64
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=98.27 E-value=9.8e-07 Score=80.38 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=62.8
Q ss_pred CCeEEEeecCcccccccEEee-cCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKV-NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~-~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|+|++.. |+||.... ..++.+.||++|+++++++.+|++ ++++.. +.|+.++..|.+|++|++++
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~ 71 (233)
T 1ii5_A 3 AMALKVGVVG---NPPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILIG 71 (233)
T ss_dssp SCCEEEEECC---CTTTCEEC-----CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEEecC---CCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEEe
Confidence 3678998853 56676541 246789999999999999999999 999877 47999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|.+|+
T Consensus 72 ~~~~~~~r~ 80 (233)
T 1ii5_A 72 PISVTPERA 80 (233)
T ss_dssp EEECCHHHH
T ss_pred eeecCcccc
Confidence 999998884
No 65
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.25 E-value=6.8e-05 Score=70.69 Aligned_cols=205 Identities=11% Similarity=0.002 Sum_probs=122.2
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
....+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++.+++++||......
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 4567899999863 333334556666666552 455544 45556776666666777788999888532221
Q ss_pred HHHHHHHhhhh-cCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHHHH
Q 008904 103 MAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l 179 (549)
.. .+...+.. .++|+|......+ +. ++...+.++....+..+++.|...|-++|++|..+. .......+.+
T Consensus 75 ~~-~~~~~l~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~ 148 (289)
T 1dbq_A 75 PE-PLLAMLEEYRHIPMVVMDWGEA---KA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 148 (289)
T ss_dssp CH-HHHHHHHHTTTSCEEEEECSSC---CS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred CH-HHHHHHHhccCCCEEEEccCCC---cc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHH
Confidence 11 22333333 7999998754322 11 223345566777788888998888999999997542 3456677888
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+++.|+.+.....+... ....+....++++.+. .++.|+. .+...+..+++++++.|+..++
T Consensus 149 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~ 215 (289)
T 1dbq_A 149 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQ 215 (289)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 99999888764322112111 1233334455555443 4565554 4556677889999999986444
No 66
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=98.24 E-value=1.1e-06 Score=82.17 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=65.0
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++++.||++||++++++.+|++ ++++.. .+|+.++..|.+|++|++. +
T Consensus 31 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~------~~~~~~~~~l~~G~~D~~~-~ 98 (267)
T 3mpk_A 31 HPVVKVAVLN--LFAPFTLFR-TDEQFGGISAAVLQLLQLRTGLD--FEIIGV------DTVEELIAKLRSGEADMAG-A 98 (267)
T ss_dssp CSEEEEEEET--EETTTEECC-TTCCCBSHHHHHHHHHHHHHCCE--EEEEEE------SSHHHHHHHHHHTSCSEEE-E
T ss_pred CCcEEEEeCC--CCCCeEEEC-CCCcEeeeHHHHHHHHHHHHCCe--EEEEec------CCHHHHHHHHHCCCccEEe-c
Confidence 5789999854 577887654 36789999999999999999999 999865 2699999999999999976 8
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 99 ~~~t~~r~ 106 (267)
T 3mpk_A 99 LFVNSARE 106 (267)
T ss_dssp EECCGGGT
T ss_pred ccCChhhh
Confidence 99999986
No 67
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.23 E-value=0.00018 Score=68.23 Aligned_cols=210 Identities=10% Similarity=-0.048 Sum_probs=125.0
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCch
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 102 (549)
+..+||++.|.. ..+......+++.+.++. |+++.+ +.++..++....+....++.+++++||- |..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468899999864 333334556666666652 444432 2335567777677777788889998774 54444
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCc-EEEEEEecC--CcccchHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWG-EVIAIFNDD--DQGRNGVTA 178 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~-~v~ii~~~~--~~g~~~~~~ 178 (549)
........+...++|+|.+.... ... +.+..+.......+..+++.+.. .|-+ +++++.... .......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 43344455667899999875431 111 33445667777778888888877 8887 998887432 223445667
Q ss_pred HHHHHhhcC--eEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 179 LGDKLAEIR--CKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 179 l~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
+.+.+++.+ +++... .+... ....+....++++.+.. ++.|+ +.+...+..+++++++.|+. .+...++.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 778887654 443321 11211 22334445556554433 34443 34445677788999999876 44444444
No 68
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.23 E-value=0.0001 Score=69.42 Aligned_cols=211 Identities=9% Similarity=-0.053 Sum_probs=126.9
Q ss_pred ceEEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
+..+||+++|.. ..+......+++.+.++. |+++.+...++..++....+....++.+++++||.....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 456899999863 233334456666665553 456655443335666666667777788899998864333
Q ss_pred -hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-C-CcEEEEEEecCC--cccchH
Q 008904 102 -VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 102 -~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~-W~~v~ii~~~~~--~g~~~~ 176 (549)
.........+...++|+|.+....+ + .+.+..+.+.....++.+++.|... | -++++++..... ......
T Consensus 76 ~~~~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~ 150 (289)
T 3brs_A 76 YEKTYDAAKEIKDAGIKLIVIDSGMK---Q--DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDRE 150 (289)
T ss_dssp TTTTHHHHTTTGGGTCEEEEESSCCS---S--CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH
T ss_pred hHHhHHHHHHHHHCCCcEEEECCCCC---C--CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHH
Confidence 2222333445567999998754322 1 1234556677777888888888775 6 999999986432 334556
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+.+.+++.|..+....... ....+....++++.+. .++.|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 151 EGLKIGLSDDSNKIEAIYYCD----SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHHGGGGGGEEEEEECT----TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHHhCCCcEEeeecCC----CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 778888888886543322111 1233344455554433 344443 45556677889999999976 444444443
No 69
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.22 E-value=0.00018 Score=69.36 Aligned_cols=206 Identities=9% Similarity=-0.000 Sum_probs=125.5
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcC--cEEEEcCCC
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD--TLAIVGPQS 100 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~--v~aiiGp~~ 100 (549)
.+..+||+++|.. ..+......+++.+.++. |+++. +.++..++....+....++.++ +.+||....
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPYV--PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCEE--EEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEEE--EecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 3456899999853 222223445555555442 44444 4455666766666667777788 999887443
Q ss_pred ch-HHHHHHHhhhhcCCcEEecccCCCCCCCCCC--CceEEccCCcHHHHHHHHHHHHH--cCCcEEEEEEecCC--ccc
Q 008904 101 AV-MAHVLSHLANELQVPLLSFTALDPTLSPLQY--PFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDDD--QGR 173 (549)
Q Consensus 101 s~-~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~--~~~~r~~ps~~~~~~ai~~~l~~--~~W~~v~ii~~~~~--~g~ 173 (549)
.. ........+...++|+|......+..+...+ +.+..+.++....++.+++.|.. .|-++|++|..... ...
T Consensus 73 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~ 152 (332)
T 2rjo_A 73 DSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAI 152 (332)
T ss_dssp SHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHH
Confidence 33 2223344455679999987543222111111 34566777788888888888877 69999999985432 344
Q ss_pred chHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC---CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 174 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 174 ~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
...+.|.+.+++. |+.+.....-. ....+....++++.+. .++.|+ +.+...+..+++++++.|+.
T Consensus 153 ~R~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 153 ERKAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 5667788899988 88765432111 1233334445554333 344444 44556677899999998875
No 70
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.21 E-value=0.0001 Score=70.11 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=118.5
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
.++.+||++.+.+.+.-.....++ .+.+++.|.+ .|.++.+.+.|+..++....+.+..+.++++++||.... ..
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi---~~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGL---LDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT-PT 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHH---HHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH-HH
T ss_pred cCCcEEEEEEeccChhHHHHHHHH---HHHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh-HH
Confidence 367899988444433222233333 4455666544 377899999999999988888888888889999987532 22
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC------CCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccc
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRN 174 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~------~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~ 174 (549)
...+.. ...++|+|..+..++.... ...+++..+.- ...+...++++.+. |-+++++|+.... .+..
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~ 156 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC--CcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHH
Confidence 233333 2679999987654432110 11133433331 11245566777776 9999999996543 2455
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
..+.+++.+++.|+.+...... ...+....++++.. .++.|++..+.
T Consensus 157 r~~g~~~al~~~gi~~~~~~~~------~~~~~~~~~~~l~~-~~dai~~~~D~ 203 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHGG-GCSEEEECSCH
T ss_pred HHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHHHhc-cCCEEEECCcH
Confidence 6788888999999987654322 13456677777763 57777765443
No 71
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=98.18 E-value=1.7e-06 Score=78.75 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=64.4
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+||.... .++.+.||++||++++++.+|++ ++++.. +|..++..|.+|++|++ ++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 10 HRTIVVGGDR--DYPPYEFID-QNGKPAGYNVELTRAIAEVMGMT--VEFRLG-------AWSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSCEEEEEET--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEE-EE
T ss_pred CCEEEEEecC--CCCCeEEEC-CCCCEeeeEHHHHHHHHHHcCCc--eEEEeC-------CHHHHHHHHhCCCeeEE-Ee
Confidence 4779999843 567777654 36779999999999999999999 999888 99999999999999995 68
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 77 ~~~~~~r~ 84 (234)
T 3h7m_A 77 ISWSEKRA 84 (234)
T ss_dssp EECCHHHH
T ss_pred ccCCHhHH
Confidence 99998885
No 72
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.13 E-value=2.3e-05 Score=74.00 Aligned_cols=207 Identities=8% Similarity=-0.068 Sum_probs=120.5
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
.....+||+++|....+......+++.+.+ +. |+++.+ .++..++....+....++.+++++||......
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~gi~~~~~---~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 74 (288)
T 2qu7_A 5 TGRSNIIAFIVPDQNPFFTEVLTEISHECQ---KH-----HLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKS 74 (288)
T ss_dssp --CEEEEEEEESSCCHHHHHHHHHHHHHHG---GG-----TCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSS
T ss_pred cCCCCEEEEEECCCCchHHHHHHHHHHHHH---HC-----CCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCC
Confidence 456788999999722111223333333333 22 555544 45556666666666777788999998744332
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
....+..+ .++|+|.+....+ + +.+..+.......+..+++.|...|-++|+++..... ......+.|.
T Consensus 75 ~~~~~~~l---~~iPvV~~~~~~~---~---~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 145 (288)
T 2qu7_A 75 KFQMKREW---LKIPIMTLDRELE---S---TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYN 145 (288)
T ss_dssp CCCCCGGG---GGSCEEEESCCCS---S---CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHHHHh---cCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHH
Confidence 21222222 7899998754322 1 1233455677777888889988889999999986432 3445567788
Q ss_pred HHHhhcCeEEEEEEcc--CCCCCC----ChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 181 DKLAEIRCKISYKSAL--PPDQSV----TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~--~~~~~~----~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.+++.|+.+.....+ ... . ...+-...++++.+..++.|+. .+...+..+++++++.|+..++-+.+
T Consensus 146 ~~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 219 (288)
T 2qu7_A 146 KAISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVII 219 (288)
T ss_dssp HHHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEE
T ss_pred HHHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEE
Confidence 8888888764321111 111 1 1222233444443336676654 45556777889999999865443333
No 73
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.13 E-value=0.00011 Score=69.90 Aligned_cols=212 Identities=9% Similarity=0.010 Sum_probs=126.6
Q ss_pred CCceEEEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEEc-C
Q 008904 23 KPEVLNVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIVG-P 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~~v~aiiG-p 98 (549)
..+..+||+++|.. ..+......+++-+.++. +|+.+.+... +...++..-.+....++.+++++||- |
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 45678999999984 333334455555555542 1456666554 33456666666667777889998885 4
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC--cEEEEEEec------CC
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFND------DD 170 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W--~~v~ii~~~------~~ 170 (549)
............+...++|+|......+.. +.+-.+.+.....++.+++.|...|- ++|++|... ..
T Consensus 78 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 333333444455666799999875432211 12345557777788889999988887 999999842 12
Q ss_pred cccchHHHHHHHHhhcCeEE--EEEEccCCCCCCChhhHHHHHHHHh-c-CCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 171 QGRNGVTALGDKLAEIRCKI--SYKSALPPDQSVTETDVRNELVKVR-M-MEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 171 ~g~~~~~~l~~~~~~~g~~v--~~~~~~~~~~~~~~~~~~~~l~~l~-~-~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
......+.+.+.+++.|..+ .....-... .......++++. . ..++.|+...+. +..+++++++.|+ .
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~ 224 (304)
T 3gbv_A 153 QQESREIGFRQYMQEHHPACNILELNLHADL----NIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--S 224 (304)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEEEESSC----SSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--C
T ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeeecCCC----HHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--C
Confidence 33456677888888877543 222111111 112223333332 2 246666665544 6778999999997 4
Q ss_pred CeEEEEeC
Q 008904 247 GYVWIATT 254 (549)
Q Consensus 247 ~~~~i~~~ 254 (549)
+...++.+
T Consensus 225 di~vig~d 232 (304)
T 3gbv_A 225 DFSLIGYD 232 (304)
T ss_dssp SCEEEEES
T ss_pred CcEEEEeC
Confidence 55555554
No 74
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=98.12 E-value=2.5e-06 Score=79.11 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=64.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++. .|+||.... .++.+.||++||++++++.+|++ .++++.. .|+.++..|.+|++|+++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~-~~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 79 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVG-ADGKVSGAAPDVAREIFKRLGVA-DVVASIS-------EYGAMIPGLQAGRHDAITAG 79 (257)
T ss_dssp HTEEEEEEC---CCTTTCEEC-TTCCEESHHHHHHHHHHHHTTCC-EEEEEEC-------CGGGHHHHHHTTSCSEECSC
T ss_pred CCeEEEEcC---CCCCeeEEC-CCCCcccccHHHHHHHHHHcCCC-eeeEEeC-------CHHHHHHHHHCCCcCEEEec
Confidence 467999885 466776544 35789999999999999999985 2777788 89999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 80 ~~~t~~r~ 87 (257)
T 2q88_A 80 LFMKPERC 87 (257)
T ss_dssp CBCCHHHH
T ss_pred ccCCHHHH
Confidence 99999885
No 75
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.12 E-value=0.00016 Score=68.42 Aligned_cols=204 Identities=11% Similarity=-0.020 Sum_probs=129.8
Q ss_pred eEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
.++||+++|.. ..+......+++.+.++. |+++.+...++..++....+....++.+++++||- |.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999885 333344566666666663 45555433222257777777778888889998884 555444
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC--CcEEEEEEecCC--cccchHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~--W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.......+...++|+|......+.. ...+.+..+.+.....++.+++.|...+ -++++++..... ......+.+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 4445556677899999975433221 1123344556777888888999988888 899999975432 234556788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMD 245 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~ 245 (549)
.+.+++.|+++.... . . .........++++... .++.|+ +.+...+..+++++++.|+..
T Consensus 153 ~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~v 214 (297)
T 3rot_A 153 KTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYD 214 (297)
T ss_dssp HHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCcc
Confidence 889999998886543 1 1 2234444555554332 345444 455566677888888877643
No 76
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.11 E-value=2.8e-06 Score=79.65 Aligned_cols=75 Identities=9% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... ++.+.||.+|+++++++.+|++ ++++.. .|..++..|.+|++|+++++
T Consensus 41 ~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 107 (272)
T 2pvu_A 41 KKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLD--YELKNI-------GWDPLFASLQSKEVDMGISG 107 (272)
T ss_dssp CCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEC-------CHHHHHHHHHHTSSSEECSS
T ss_pred CCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCc--eEEEEC-------CHHHHHHHHhCCCCCEEEeC
Confidence 4779999853 566776542 5789999999999999999999 999998 89999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++++++|+
T Consensus 108 ~~~~~~r~ 115 (272)
T 2pvu_A 108 ITITDERK 115 (272)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHH
Confidence 88888875
No 77
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.11 E-value=0.00021 Score=67.29 Aligned_cols=209 Identities=13% Similarity=0.015 Sum_probs=129.0
Q ss_pred ceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCch
Q 008904 25 EVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~ 102 (549)
+..+||+++|... .+......+++.+.++. |+.+. +.+...++....+....++.+++++|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTAI--ALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 4568999999643 22223445555555442 45554 445666777667777778888999888 455545
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH--cCCcEEEEEEecCC--cccchHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~--~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
........+...++|+|......+ +.+..+.......+..+++.|.. .|-++++++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 555566667778999998754321 12334556777778888888888 89999999974432 22345677
Q ss_pred HHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC-----CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM-----EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++. |+++.....+.... .+.......++++.+. .++.| ++.+...+..+++++++.|+. +...++
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vvg 222 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVIP-NTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT--DIRTYG 222 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCSS-SHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC--SCEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCCC-CCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC--CeEEEE
Confidence 88888888 57754332222110 1122333444444332 45555 445566777889999999975 444444
Q ss_pred eC
Q 008904 253 TT 254 (549)
Q Consensus 253 ~~ 254 (549)
.+
T Consensus 223 ~d 224 (291)
T 3l49_A 223 VD 224 (291)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 78
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.10 E-value=0.00027 Score=66.45 Aligned_cols=205 Identities=8% Similarity=-0.019 Sum_probs=120.9
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. ..+......+++.+.++ .|+++.+ .+...++....+....++.+++++||.....
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (285)
T 3c3k_A 5 TAKTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDAL 74 (285)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCG
T ss_pred CCCCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34567899999863 22223344455444444 2566544 4455566555555666777799998874433
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+..+ . .++|+|......+ +. .+..+.......+..+++.|...|-++|++|..... ......+.+
T Consensus 75 ~~~~~~~~l-~-~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf 146 (285)
T 3c3k_A 75 SELPELQNI-I-GAFPWVQCAEYDP---LS---TVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGY 146 (285)
T ss_dssp GGHHHHHHH-H-TTSSEEEESSCCT---TS---SSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHH
T ss_pred CChHHHHHH-h-cCCCEEEEccccC---CC---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHH
Confidence 222333333 4 8999998754321 11 123445666777788888888889999999986532 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHH--HhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+. ...-.. +..+-...+++ +.+. .++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 147 ~~~l~~~g~~~~-~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 147 LNRLKFHGLDYS-RISYAE----NLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHHHTCCCC-EEEECS----SSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCce-EeecCC----ChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 888888887543 111111 12223344555 5443 355555 345556778889999999865443333
No 79
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.10 E-value=2e-06 Score=77.92 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=59.8
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. |+||... .++++.||++|+++++++.+|++ ++++.. +.|..++..|.+|++|++++++
T Consensus 3 ~~l~v~~~~---~~P~~~~--~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATRV---IPPFVLS--NKGELSGFSIDLWRSIATQIGIE--SKLIEY------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEECC---BTTTBBC--C---CBSHHHHHHHHHHHHHTCC--EEEEEC------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEecC---CCCeEEe--cCCceEEEeHHHHHHHHHHhCCc--EEEEEc------CCHHHHHHHHHCCCcCEEEecc
Confidence 568888753 5666554 46789999999999999999999 999887 3589999999999999999889
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
+.|++|+
T Consensus 70 ~~~~~r~ 76 (228)
T 2pyy_A 70 SITAERE 76 (228)
T ss_dssp BCCHHHH
T ss_pred ccCHHHH
Confidence 9888874
No 80
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.10 E-value=0.00032 Score=66.05 Aligned_cols=197 Identities=11% Similarity=0.017 Sum_probs=117.8
Q ss_pred EEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-CchHH
Q 008904 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAVMA 104 (549)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~-~s~~~ 104 (549)
.+||+++|.. ..+......+++.+.++ .|+++. +.++..++....+....++.+++++||... .....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ--------LGYEAT--IFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999863 33333445555555554 245554 456666777666677777888999888643 32222
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEE-ccCCcHHHHHHHHHHHHHc------CCcE--EEEEEecC--Cccc
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ-TAPNDLYLMSAIAEMVSYF------GWGE--VIAIFNDD--DQGR 173 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r-~~ps~~~~~~ai~~~l~~~------~W~~--v~ii~~~~--~~g~ 173 (549)
......+...++|+|.+....+ +. +.+.. +.++....++.+++.|... |.++ ++++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGIN---AR--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS---CS--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCC---CC--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 2233445568999998754322 11 11222 5566677778888887776 8888 66666432 2334
Q ss_pred chHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 174 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 174 ~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
...+.|.+.+++. |+.+..... . . .+..+....++++.+ ..++.|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQS-A-E--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEE-C-T--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEecc-C-C--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 5567788888888 877643221 1 1 123333344444433 24566554 455667788999999887
No 81
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.00032 Score=67.32 Aligned_cols=211 Identities=8% Similarity=0.050 Sum_probs=122.6
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
.+..+||+++|.+. .+...+..++++.=+.. .|+.+. +.++..++....+....++.+++++||.......
T Consensus 4 ~~~~~Igvi~~~~~----~~~~~~~~gi~~~a~~~---~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 74 (325)
T 2x7x_A 4 TPHFRIGVAQCSDD----SWRHKMNDEILREAMFY---NGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAA 74 (325)
T ss_dssp --CCEEEEEESCCS----HHHHHHHHHHHHHHTTS---SSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHH
T ss_pred CCCeEEEEEecCCC----HHHHHHHHHHHHHHHHc---CCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 35678999998722 23333333333322221 145544 4556667766666777778889999887544332
Q ss_pred -HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHH
Q 008904 104 -AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 104 -~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.......+...++|+|.+....+ +. +.+..+.+.....+..+++.|... |-++|++|..... ......+.
T Consensus 75 ~~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (325)
T 2x7x_A 75 PMTPIVEEAYQKGIPVILVDRKIL---SD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQG 149 (325)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCC---Cc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHH
Confidence 22333445567999998743221 11 123445566777778888887775 8999999985432 33455677
Q ss_pred HHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 179 l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+.+++. |+.+..... . . ....+....++++.. ..++.|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 150 f~~al~~~pg~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gip-~dv~vig~D 222 (325)
T 2x7x_A 150 FMAAISKFPDIKLIDKAD-A-A--WERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGRE-KEMIFVGID 222 (325)
T ss_dssp HHHHHHTCTEEEEEEEEE-C-T--TSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTCT-TSSEEEEEE
T ss_pred HHHHHHhCCCCEEEeeec-C-C--CCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCCC-CCeEEEEEC
Confidence 88888888 877653221 1 1 122333344444433 2456555 44555677788999999862 344444444
No 82
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.09 E-value=0.00042 Score=65.74 Aligned_cols=191 Identities=16% Similarity=0.145 Sum_probs=122.4
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
...+.++||++--...+.-...+.++ .+.+++.|.. .|..+++.+.|.++|+......+.+++++++++||+- .+
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~---~~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai-~t 78 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGL---LDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGI-AT 78 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHH---HHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE-SH
T ss_pred hhcCCceEEEEEeecChhHHHHHHHH---HHHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEc-CC
Confidence 34578999988544322112344555 4556666644 5788999999999999999999999999999999863 33
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCC------CCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc-c
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-G 172 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~------~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~-g 172 (549)
..+.+++. ...++|+|..+.++|.... ..-+++.-+. +..-....+++++++ +-++++++|+.... +
T Consensus 79 ~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 79 PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 44444443 3457999987777664321 1123444433 111134455666664 68999999976543 3
Q ss_pred cchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 173 RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 173 ~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
....+.+++.+++.|+++...... ...++...++.+.. +.+++++..+.
T Consensus 155 ~~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~~-~~d~i~~~~d~ 203 (302)
T 3lkv_A 155 VSLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHHT-TCSEEEECSCH
T ss_pred HHHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhccC-CeeEEEEeCCc
Confidence 345677888888899988754322 25567777777653 56777776554
No 83
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.09 E-value=0.00021 Score=67.38 Aligned_cols=212 Identities=10% Similarity=0.010 Sum_probs=124.7
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||-....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 44567899999863 22222334455444443 2566544 4555666666666667777899988863322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-C--cccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D--QGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~-~--~g~~~~~~ 178 (549)
.....+. .+...++|+|......+ +. .+..+.......+..+++.|...|.+++++|.... . ......+.
T Consensus 83 ~~~~~~~-~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDEHVA-EFKRSPVPIVLAASVEE---QE---ETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHHHHH-HHHHSSSCEEEESCCCT---TC---CSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHHH-HHHhcCCCEEEEccccC---CC---CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 2222333 34467999998754321 11 12245566777788888998888999999998653 2 34556778
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
+.+.+++.|+.+.....+... .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 156 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 888999888754321111111 1233334455555443 355554 34555677889999999986443 3344433
No 84
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.09 E-value=0.00053 Score=65.54 Aligned_cols=206 Identities=12% Similarity=-0.003 Sum_probs=121.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~ 104 (549)
+||+++|.. .++......+++.+.++. |++ +.+. ++..++....+....++.+++.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 223334456666666653 344 4444 3566777777788888888998866 45555443
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH---cCCcEEEEEEecC--CcccchHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY---FGWGEVIAIFNDD--DQGRNGVTAL 179 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~---~~W~~v~ii~~~~--~~g~~~~~~l 179 (549)
..+...+...+||+|.+.... ... ....+.........++..++.|.. .|-+++++|.... .......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~---~~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDT---KPE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCC---CGG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCC---CCC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 444455667899999974321 111 112232255666677888888766 5788999997532 2234456677
Q ss_pred HHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 180 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 180 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+.+++. ++++.....-. .........++++... ..+.|+ +.+...+..+++++++.| . .+...++.+
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 7777665 55554432211 1233444455554433 344444 344556777888888888 5 444444443
No 85
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.07 E-value=0.0002 Score=69.26 Aligned_cols=213 Identities=9% Similarity=0.010 Sum_probs=128.9
Q ss_pred CCceEEEEEEecc---CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 23 KPEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 23 ~~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
....-+||+++|. +.++......+++-+.++ .|+.+. +.++..++....+....++.+++++||-..
T Consensus 58 ~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 127 (338)
T 3dbi_A 58 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEE--------KGRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYP 127 (338)
T ss_dssp --CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHH--------TTCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred hCCCCEEEEEecCCcccChhHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 3456789999996 232223344454444444 255554 445566666666666777788999988644
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
.......+..++...++|+|......+ + +.+..+..+....+...++.|...|-+++++|..... ......+
T Consensus 128 ~~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 201 (338)
T 3dbi_A 128 RFLSVDEIDDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 201 (338)
T ss_dssp SSSCHHHHHHHHHHCSSCEEEESSCCS---S---SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHcCCCCEEEEcCCCC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 333345566778888999998743322 1 1122355667777888888888899999999975432 3345567
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
.+.+.+++.|+.+.....+... .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 202 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 202 GYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 7888898888765322111211 123333344555443 3455554 45556677889999999987554 3344444
No 86
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.07 E-value=0.00045 Score=65.27 Aligned_cols=200 Identities=10% Similarity=0.065 Sum_probs=121.5
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
..+||++-+.+.+.-.....+++ +.+++.+- .|.++.+.+.|+..++....+.+..+.++++++||.... ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~---~~l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQ---DGLAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHH---HHHHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHH---HHHHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 45799883333322223334443 34444432 356888888999988888777777787889999987432 2222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCC---C---CCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc-ccchH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLS---P---LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-GRNGV 176 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls---~---~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~-g~~~~ 176 (549)
.+.. ...++|+|..+..++... . ....++..+. +..-+...++++... |-+++++|+..... +....
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 2322 246899998654443221 1 1112333333 222355666777776 89999999976542 44566
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
+.+++.+++.|+.+....... ..+....++++.. +++.|++..+ ..+...++.+.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~~------~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVPS------TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEESS------GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecCC------HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 788889999999876543221 3456677777763 6777776544 344455666666664
No 87
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.06 E-value=0.00034 Score=65.99 Aligned_cols=212 Identities=9% Similarity=-0.044 Sum_probs=124.1
Q ss_pred CCCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
......+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++++||....
T Consensus 16 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 16 RAGRTRSIGLVIPDLENTSYTRIANYLERQARQ--------RGYQLLI--ACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp --CCCCEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred hcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345677899999853 22222334444444443 2555544 455556666556666777789998886333
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
......+...+...++|+|......+ + +.+..+.......+..+++.|...|.++|++|..... ......+.
T Consensus 86 ~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 159 (293)
T 2iks_A 86 LPPEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQG 159 (293)
T ss_dssp SCTTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHH
Confidence 22112233445667999998754321 1 1233455667777888888888889999999986532 23455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
|.+.+++.|+...... ... .....-...++++.+. .++.|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 160 f~~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 160 FRTAWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHHHHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 8888888887433221 111 1233334455555443 345544 34555677788888888876444 3444443
No 88
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.06 E-value=0.00044 Score=65.16 Aligned_cols=209 Identities=10% Similarity=0.046 Sum_probs=125.3
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~ 100 (549)
..+..+||+++|... .+......+++-+.++ .|+.+. +.+...++....+....++.+++++||- +..
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKA--------NKYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLD 74 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHH--------cCCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 445678999998743 2222334455444444 145554 4455667777677777788888888875 333
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-c-CCc-----EEEEEEecCC--c
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-F-GWG-----EVIAIFNDDD--Q 171 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~-~W~-----~v~ii~~~~~--~ 171 (549)
..........+...++|+|......+. .+.+..+.+.....+..+++.|.. + |-+ ++++|..... .
T Consensus 75 ~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~ 149 (293)
T 3l6u_A 75 DVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYT 149 (293)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHH
T ss_pred hHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCch
Confidence 333334445566679999997543321 122345556777778888888777 5 666 9999985432 3
Q ss_pred ccchHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCe
Q 008904 172 GRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 172 g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
.....+.+.+.+++. |+.+.....-. .........++++... .++.| ++.+...+..++++++++|+. +.
T Consensus 150 ~~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di 222 (293)
T 3l6u_A 150 TNERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS--GK 222 (293)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC--CC
T ss_pred HHHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC--Ce
Confidence 345567888889888 88876543222 1234444455555433 34444 445556677889999999975 44
Q ss_pred EEEEe
Q 008904 249 VWIAT 253 (549)
Q Consensus 249 ~~i~~ 253 (549)
..++.
T Consensus 223 ~vig~ 227 (293)
T 3l6u_A 223 IVVGI 227 (293)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 89
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.03 E-value=0.0003 Score=65.67 Aligned_cols=205 Identities=10% Similarity=0.021 Sum_probs=120.4
Q ss_pred eEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
.-+||+++|.. .++......+++.+.++ .|+++.+ .+...++....+....++.++++++|- +....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNK--------AGYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHH--------TSCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 45799999863 22222334444444443 2455544 344556655555666677778887764 32222
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.. ....+...++|+|......+ + +.+..+..+....+..+++.|...|.++++++..... ......+.+.+
T Consensus 72 ~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 QR-THQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HH-HHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 22 23344567999998743221 1 2234566777777888889888889999999986532 23455677888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+++.|+.+.....+... ....+....++++.+. .++.|+ +.+...+..+++++++.|+..++-+.|
T Consensus 145 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 213 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAI 213 (275)
T ss_dssp HHHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 888888754322222211 1233344455555443 355554 445566778899999999765443433
No 90
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.01 E-value=0.0005 Score=65.31 Aligned_cols=204 Identities=9% Similarity=0.004 Sum_probs=120.0
Q ss_pred EEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-CchHH
Q 008904 27 LNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAVMA 104 (549)
Q Consensus 27 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~-~s~~~ 104 (549)
-+||+++|... .+......+++.+.+ +. |+ +++.+.++..++....+....++.+++.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~---~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAK---AA-----PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHH---TC-----TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHH---hc-----CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 47999998632 222223334333333 22 44 2445556666776666666777788999888643 33333
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH------------cCCcEEEEEEecC--C
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY------------FGWGEVIAIFNDD--D 170 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~------------~~W~~v~ii~~~~--~ 170 (549)
......+...++|+|.+....+...-..++.+..+.......++.+++.|.. .|-++|++|.... .
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3344455668999998754221100001245566777777778888888776 6778999998543 2
Q ss_pred cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC----CCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 171 QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 171 ~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viil~~~~~~~~~il~~a~~~g 242 (549)
......+.|.+.+++.|+.+.....+... .+.......++++-.. .++.|+. .+...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 33456677888888888765432222211 1233334455555443 3555544 55566777888998887
No 91
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=98.01 E-value=4.8e-06 Score=78.66 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHh----CC---CCcCEEEEECCCCCCCCChHHHHHhHhcCc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL----LP---YAVPYKFIPYGDGHKNPTYSELINQITTGV 533 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~----l~---~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~ 533 (549)
.++|+|++.. .|+||.+... ++.+.||++|+++++++. +| ++ ++++.. .|+.++..|.+|+
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~~-------~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI-------TSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEEC-------CTTTHHHHHHTTS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEEC-------CHHHHHHHHHCCC
Confidence 4679998853 5677766543 578999999999999976 57 77 999998 8999999999999
Q ss_pred ccEEecceEEeeccc
Q 008904 534 SRILTKKVAQLTRVS 548 (549)
Q Consensus 534 ~d~~~~~~ti~~~r~ 548 (549)
+|++++++++|++|+
T Consensus 84 ~D~~~~~~~~t~~r~ 98 (287)
T 2vha_A 84 FDFECGSTTNNVERQ 98 (287)
T ss_dssp CSEECSSCBCCHHHH
T ss_pred eeEEeccccCCcchh
Confidence 999998899998885
No 92
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.01 E-value=0.00036 Score=64.91 Aligned_cols=207 Identities=9% Similarity=-0.053 Sum_probs=125.4
Q ss_pred EEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 27 LNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
-+||+++|... ++......+++-+.++ .|+++.+ .+...++....+....++.+++++||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA--------RGYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 47999998743 2222344455444444 2565554 44555666666666777788898888533321122
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKL 183 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~ 183 (549)
.....+...++|+|......+ + +.+..+.......++.+++.|...|-++++++..... ......+.+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 333455667999998754322 1 1123455677777888889999999999999986543 3345677888888
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--C-CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRM--M-EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~-~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
++.|+.+.....-. .+.......++++-+ . .++.|+ +.+...+..++++++++|+...+...++.+
T Consensus 147 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEA----FSRECGQRLMQQLIDDLGGLPDALV-TTSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESS----SSHHHHHHHHHHHHHHHTSCCSEEE-ESSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCC----CCHHHHHHHHHHHHhcCCCCCcEEE-EeCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 99898765433222 123333344444432 2 356554 455667778899999999722334444444
No 93
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.00 E-value=4.9e-06 Score=77.52 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+|+.... .++.+.||++|+++++++.+|++ ++++.. .|..++..|.+|++|+++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVD-AQGEVVGFDIDLAKAISEKLGKQ--LEVREF-------AFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEECS--CBTTTBEEC-TTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEECC--CCCCceEEC-CCCCEEEEEHHHHHHHHHHhCCe--EEEEec-------CHHHHHHHHhCCCccEEeec
Confidence 4678888753 456766543 36789999999999999999999 999998 89999999999999999989
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 98 ~~~~~~r~ 105 (268)
T 3qax_A 98 MSITPSRQ 105 (268)
T ss_dssp CBCCHHHH
T ss_pred CccCHhHh
Confidence 99998885
No 94
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.99 E-value=0.00062 Score=64.89 Aligned_cols=200 Identities=9% Similarity=0.004 Sum_probs=122.7
Q ss_pred eEEEEEEecc-CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~-~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
..+||+++|. +.++......+++-+.++. |+++. +.+...++....+....++.+++++||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 4579999996 3444455666776666652 55554 4455667777677777788889988885 333333
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH-HcCCcEEEEEEecCC--cccchHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
.......+...++|+|......+. ... ...+.......++.+++.|. ..|-+++++|..... ......+.+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 234445566789999987543221 111 13445567777888888887 889999999975432 2334567777
Q ss_pred HHHhhc----CeEEEEEEccCCCCCCChhhHHHHHHHHhc-C--CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 181 DKLAEI----RCKISYKSALPPDQSVTETDVRNELVKVRM-M--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 181 ~~~~~~----g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~--~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
+.+++. ++.+....... . .........++++-+ . .++.|+ +.+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQWVD-G--WLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEECG-G--GCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeeccCC-C--cCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 778776 56665433211 1 122333344444432 2 445444 44556677889999998875
No 95
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.97 E-value=0.0013 Score=61.59 Aligned_cols=205 Identities=11% Similarity=0.107 Sum_probs=119.1
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|.. .++......+++.+.++. |+.+ .+.++..++....+....++.++|++||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998863 222233455555555542 4554 34556667766666677778889988775 43333222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-C-CcEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~-W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.....+...++|+|.+....+ +. +.+..+.......++.+++.|... | -+++++|..... ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 233445667999998743211 11 122334456666677778887766 5 899999985432 23345667888
Q ss_pred HHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 182 KLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 182 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+++. |+.+.....-. ....+-...++++.+. .++.| ++.+...+..+++++++.|+ .+...++.+
T Consensus 148 al~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD----FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeeccCC----CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 88887 87764322111 1233333444544332 34443 44555677788999999987 444444443
No 96
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.97 E-value=0.00078 Score=65.09 Aligned_cols=208 Identities=5% Similarity=-0.047 Sum_probs=120.6
Q ss_pred CCceEEEEEEecc--CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcC
Q 008904 23 KPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~~v~aiiGp 98 (549)
.....+||+++|. +..+-.....+++.+.++ .|+++.+...++. .++..-.+....++.+++++||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYK--------LNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHH--------TTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHH--------cCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567899999986 333323344555544443 2566766655554 566666666677778899998875
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHc-C-CcEEEEEEecCC-cccc
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD-QGRN 174 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~-~-W~~v~ii~~~~~-~g~~ 174 (549)
............+...++|+|..........+ ...+.+..+.++....+..+++.|... | -++|++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 44332222233345568999876322111100 011223445667777788888888774 7 999999975432 2334
Q ss_pred hHHHHHHHHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 175 GVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 175 ~~~~l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
..+.+.+.+++.|. ..... +... .....-...++++.+ ..++.|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTK--ATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCC--SSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 55677788888776 32222 2211 123333344444433 2355554 4455567788999999887
No 97
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.96 E-value=0.00049 Score=65.36 Aligned_cols=211 Identities=9% Similarity=0.019 Sum_probs=121.6
Q ss_pred eEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc-hH
Q 008904 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA-VM 103 (549)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~ 103 (549)
+++||++.|... .+......+++.+.++. |+.+. +.++..++....+....++.+++++||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 578999999743 22233445555555542 45554 44555666666666667777899988864333 22
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC---CcEEEEEEecCC--cccchHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~---W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.......+...++|+|......+.. ...+++..+.......+..+++.|...| -++|++|..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1223344556799999875432211 1001234556677777788888887766 789999986432 23445677
Q ss_pred HHHHHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhc-----CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEE
Q 008904 179 LGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWI 251 (549)
Q Consensus 179 l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i 251 (549)
+.+.+++.|. .+..... . . .....-...++++.+ ..++.|+. .+...+..+++++++.|+..++ ...+
T Consensus 150 f~~al~~~g~~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQS-G-D--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHTTTCTTEEEEEEEE-C-T--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHhhCCCeEEEEecc-C-C--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 8888888885 3332111 1 1 122333334444432 24555544 4555677789999999986543 3333
Q ss_pred Ee
Q 008904 252 AT 253 (549)
Q Consensus 252 ~~ 253 (549)
+.
T Consensus 225 g~ 226 (306)
T 2vk2_A 225 SI 226 (306)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 98
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.96 E-value=0.00034 Score=65.95 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=122.9
Q ss_pred CCceEEEEEEecc-----C-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE
Q 008904 23 KPEVLNVGAIFSF-----G-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV 96 (549)
Q Consensus 23 ~~~~i~IG~l~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii 96 (549)
..+.-+||+++|. . ..+......+++-+.++ . |+++. +.+...++....+....+..+++.+||
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiI 74 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV---E-----GYALY--MSTGETEEEIFNGVVKMVQGRQIGGII 74 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH---T-----TCEEE--ECCCCSHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH---c-----CCEEE--EEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 4456789999997 2 22223344555444444 2 45544 455554444434444455567899888
Q ss_pred cCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccc
Q 008904 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRN 174 (549)
Q Consensus 97 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~ 174 (549)
-....... .....+...++|+|......+.. +.+..+.......+..+++.|...|-++++++..... ....
T Consensus 75 i~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~ 148 (292)
T 3k4h_A 75 LLYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRD 148 (292)
T ss_dssp ESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHH
T ss_pred EeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHH
Confidence 53333222 34455667899999875432211 1133455677778888999998899999999986533 2345
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEE
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (549)
..+.|.+.+++.|+.+.....+... .+.......++++-+. .++.|+ +.+...+..++++++++|+..++-+-
T Consensus 149 R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~ 223 (292)
T 3k4h_A 149 RLAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVS 223 (292)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEE
Confidence 5677888888888764321111111 1233444555555444 445554 45556677889999999986544333
No 99
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.95 E-value=0.00029 Score=66.84 Aligned_cols=206 Identities=8% Similarity=-0.086 Sum_probs=124.9
Q ss_pred CceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCc
Q 008904 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSA 101 (549)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s 101 (549)
.++.+||+++|... .+......+++-+.++. |+++.+...+...++....+....++.+++++||- |...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 35678999998642 22233445555555542 45555544433337777777777888889988884 4433
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC-----CcEEEEEEecC--Ccccc
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-----WGEVIAIFNDD--DQGRN 174 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~-----W~~v~ii~~~~--~~g~~ 174 (549)
.........+. .++|+|......+.......+.+..+.+.....+..+++.|...+ -++|+++.... .....
T Consensus 75 ~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~ 153 (304)
T 3o1i_D 75 HAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKP 153 (304)
T ss_dssp TSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CH
T ss_pred hHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHH
Confidence 32222233445 899999974332211111234566777888888899999998888 88999997543 23455
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHh-cCCCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
..+.+.+.+++.|+.+.... ... .+.......++++. ...++. | +++...+..+++++++.|+.
T Consensus 154 R~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 154 VTTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 67888888988888776532 211 12233333333332 235566 4 45667778889999888864
No 100
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=97.95 E-value=7.6e-06 Score=75.70 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC---CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEE
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRIL 537 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~ 537 (549)
.++++|++.. .++|+......++.+.||++|+++++++.+ |++ ++++.. .|+.++..|.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~-------~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVAV-------NAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEEC-------CTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc-------CHHHHHHHHhCCCCCEE
Confidence 3678998753 567776655446789999999999999999 999 999998 89999999999999999
Q ss_pred ecceEEeeccc
Q 008904 538 TKKVAQLTRVS 548 (549)
Q Consensus 538 ~~~~ti~~~r~ 548 (549)
+++++.+.+|+
T Consensus 106 ~~~~~~~~~~~ 116 (259)
T 2v25_A 106 IATFTITPERK 116 (259)
T ss_dssp CSSCBCCHHHH
T ss_pred EecCccCHHHH
Confidence 98888888774
No 101
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.94 E-value=0.0003 Score=66.32 Aligned_cols=211 Identities=9% Similarity=-0.052 Sum_probs=120.0
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHH---HHHHHHhcCcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM---GALQFMETDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~---~~~~l~~~~v~aiiGp 98 (549)
.....+||+++|... ++......+++.+.++ .|+++.+ .++..++....+ ....++.+++++||-.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 74 (290)
T 2rgy_A 5 TQQLGIIGLFVPTFFGSYYGTILKQTDLELRA--------VHRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVI 74 (290)
T ss_dssp ---CCEEEEECSCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEe
Confidence 345678999998642 2222344455444443 2565544 444445544444 5556677799988863
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~ 176 (549)
........+ ..+...++|+|......+ + +.+..+..+....+..+++.|...|-++|++|..... ......
T Consensus 75 ~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 147 (290)
T 2rgy_A 75 SHDLHDEDL-DELHRMHPKMVFLNRAFD---A---LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERL 147 (290)
T ss_dssp CSSSCHHHH-HHHHHHCSSEEEESSCCT---T---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHH
T ss_pred cCCCCHHHH-HHHhhcCCCEEEEccccC---C---CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHH
Confidence 332222233 334557999998753222 1 1223455677777888888888889999999986532 234556
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 253 (549)
+.+.+.+++.|+.+.....+... .+..+-...++++.+ ..++.|+ +.+...+..+++++++.|+..++ ...++.
T Consensus 148 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~ 224 (290)
T 2rgy_A 148 DGFFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSVIGY 224 (290)
T ss_dssp HHHHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 77888888888654211111111 122233334444432 3456665 45556677889999999986543 333433
No 102
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.94 E-value=0.0013 Score=62.42 Aligned_cols=211 Identities=13% Similarity=-0.016 Sum_probs=127.9
Q ss_pred eEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
.-+||++.+... .+......+++.+.++. |+.+.+. .++..++....+....++.+++++||- |.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 357888887743 33334456666666653 5666542 356667777777777788889998885 333333
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccchHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~~~~~l~ 180 (549)
.......+...++|+|......+ +. +.+..+.++....+..+++.|... |-++++++..... ......+.+.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAP---DS--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCT---TS--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCC---CC--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 33344555668999998754322 11 123345577777888889888888 9999999985432 2234456778
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+++.|..+......... .........+.++.+. .++.| ++.+...+..+++++++.|+. .+...++.+
T Consensus 150 ~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGI-FATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEE-EECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 8888776544332222211 1233344445554333 33433 345556677889999999986 555555554
No 103
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=97.94 E-value=8.9e-06 Score=75.77 Aligned_cols=76 Identities=16% Similarity=0.345 Sum_probs=65.0
Q ss_pred CeEEEeecCcccccccEEe--ecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 462 RQLRIGVPNRVSYRDFVFK--VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~--~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
++++|++.. .|+|+... ..+++.+.||++|+++++++.+|++ ++++.. +|..++..|.+|++|++++
T Consensus 39 ~~l~v~~~~--~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 107 (269)
T 4i62_A 39 GKLVVALNP--DFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVE--LELSPM-------SFDNVLASVQSGKADLAIS 107 (269)
T ss_dssp TEEEEEECS--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHTTSCSEECS
T ss_pred CeEEEEecC--CCCCceeecccCCCCcEeeecHHHHHHHHHHHCCc--eEEEEc-------CHHHHHHHHhCCCccEEec
Confidence 578998753 45666552 2356789999999999999999999 999998 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
+++.|++|+
T Consensus 108 ~~~~~~~r~ 116 (269)
T 4i62_A 108 GVSKTDERS 116 (269)
T ss_dssp SCBCCHHHH
T ss_pred CCcCCHhHh
Confidence 999998875
No 104
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.93 E-value=0.00037 Score=67.14 Aligned_cols=209 Identities=9% Similarity=-0.000 Sum_probs=121.6
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||.....
T Consensus 60 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 129 (332)
T 2o20_A 60 SKRTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSS 129 (332)
T ss_dssp --CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred cCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34567899999863 22223344455444444 2566544 4555566655556666777899988863322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+.. +...++|+|......+ +.. +..+.+.+...+..+++.|...|-+++++|..... ......+.|
T Consensus 130 ~~~~~~~~-l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 202 (332)
T 2o20_A 130 LDEKIRTS-LKNSRTPVVLVGTIDG---DKE---IPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGY 202 (332)
T ss_dssp CCHHHHHH-HHHHCCCEEEESCCCT---TSC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHH
T ss_pred CCHHHHHH-HHhCCCCEEEEccccC---CCC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHH
Confidence 22223333 3467999998754322 112 22345666667788888888889999999986532 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+.....+... .+..+-...++++.+..++.|+. .+...+..+++++++.|+..++-+.+
T Consensus 203 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 271 (332)
T 2o20_A 203 QEALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEI 271 (332)
T ss_dssp HHHHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEE
Confidence 88888888754321111111 12222233444433236676655 45566778899999999865443433
No 105
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.93 E-value=0.0008 Score=63.81 Aligned_cols=215 Identities=10% Similarity=0.002 Sum_probs=122.9
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCch
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 102 (549)
++++||+++|.. .++......+++-+.++. |+++ .+.++ .++....+....++.+++++||- |....
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 69 (306)
T 8abp_A 1 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPK 69 (306)
T ss_dssp -CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCch
Confidence 368999999874 223334456666666553 4554 45555 47777777777888889988875 44444
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH-HcCC-----cEEEEEE-ecC--Cccc
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGW-----GEVIAIF-NDD--DQGR 173 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W-----~~v~ii~-~~~--~~g~ 173 (549)
........+...++|+|......+.......+.+..+.......++..++.|. +++- .+++++. ... ....
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 149 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR 149 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHH
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHH
Confidence 44544556677899999875332221111111233344556656665665554 3233 3888886 332 2334
Q ss_pred chHHHHHHHHhhcCeE---EEEEEccCCCCCCChhhHHHHHHHHhcCC--CeE-EEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 174 NGVTALGDKLAEIRCK---ISYKSALPPDQSVTETDVRNELVKVRMME--ARV-IVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~---v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~v-iil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
...+.+.+.+++.|.. +..... . . .+...-...++++.... .+. +|++.+...+..+++++++.|+...+
T Consensus 150 ~R~~Gf~~~l~~~g~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~d 225 (306)
T 8abp_A 150 RRTTGSMDALKAAGFPEKQIYQVPT-K-S--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 225 (306)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEC-S-S--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHhcCCCCcEEEeecc-C-C--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCc
Confidence 5567788888887642 332221 1 1 12334445555555443 445 35555666778899999999975423
Q ss_pred eEEEEeC
Q 008904 248 YVWIATT 254 (549)
Q Consensus 248 ~~~i~~~ 254 (549)
...++.+
T Consensus 226 i~vvG~D 232 (306)
T 8abp_A 226 IIGIGIN 232 (306)
T ss_dssp EEEEEES
T ss_pred eEEEEeC
Confidence 3344444
No 106
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.93 E-value=7.4e-05 Score=69.90 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=109.9
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.- .++......+++-+. .+. |+.+. +.++..++....+....++.+++++||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~---~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVL---LEQ-----RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHH---GGG-----TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHH---HHC-----CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 388998853 222122233333332 222 45443 44544444433444556667788888853322222 2
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-C-----ccc-chHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D-----QGR-NGVTAL 179 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~-~-----~g~-~~~~~l 179 (549)
....+...++|+|......+ + +..+.......++.+++.|...|-+++++|.... . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 23445567999998743221 1 3455567777788888998888999999998654 2 334 567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+++.|+.+.....+... .+..+-...++++.+.. ++.|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 88898888754321011111 12333344555554433 55555 5566677788999999998655544443
No 107
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.91 E-value=0.00035 Score=65.72 Aligned_cols=209 Identities=9% Similarity=-0.035 Sum_probs=121.6
Q ss_pred eEEEEEEecc-----CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 26 VLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 26 ~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.-+||+++|. ..++......+++.+.++ .|+++.+ .++..++....+....++.+++++||....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA--------VNYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH--------TTCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH--------cCCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999986 334434455566555554 2555543 444444444344555666778998886332
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
...... ...+...++|+|......+ +.. +..+.......+..+++.|...|-++|++|..... ......+.
T Consensus 74 ~~~~~~-~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYNDPR-VQFLLKQKFPFVAFGRSNP---DWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTCHH-HHHHHHTTCCEEEESCCST---TCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcHH-HHHHHhcCCCEEEECCcCC---CCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 221222 3344567999998754221 111 22344566677788888888889999999986432 23455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-C---CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-M---EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 253 (549)
|.+.+++.|+.+.....+... .+..+-...++++.+ . .++.|+. .+...+..+++++++.|+..++ ...++.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 888888888754321111111 123333445555544 3 4555554 4556677889999999986543 344444
Q ss_pred C
Q 008904 254 T 254 (549)
Q Consensus 254 ~ 254 (549)
+
T Consensus 224 d 224 (287)
T 3bbl_A 224 D 224 (287)
T ss_dssp S
T ss_pred C
Confidence 3
No 108
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=97.91 E-value=8.1e-06 Score=76.99 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=65.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++.+.||.+|+++++++.+|++ ++++.. .|+.++..|.+|++|++++.
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~G~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHD-KDGKLTGYDVEVTRAVAEKLGVK--VEFKET-------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCcCEEEec
Confidence 4679999854 477776654 46679999999999999999999 999999 79999999999999999988
Q ss_pred eEE-eeccc
Q 008904 541 VAQ-LTRVS 548 (549)
Q Consensus 541 ~ti-~~~r~ 548 (549)
+++ |.+|.
T Consensus 124 ~~~~t~~r~ 132 (283)
T 2yln_A 124 VGLTSPERQ 132 (283)
T ss_dssp CCCCSHHHH
T ss_pred CccCChhhh
Confidence 888 88874
No 109
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=97.90 E-value=1e-05 Score=76.65 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC---CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
++++|++.. .|+||.... .++.+.||++|+++++++.+ |++ ++++.. .|+.++..|.+|++|+++
T Consensus 44 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~G~~D~~~ 111 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENK--VQFVLV-------EAANRVEFLKSNKVDIIL 111 (292)
T ss_dssp SSEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCTTC--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEECC--CCCCeeEEC-CCCCEeeEhHHHHHHHHHHhccCCce--EEEEEc-------CHHHHHHHHhCCCeeEEe
Confidence 578998753 467776654 46789999999999999999 999 999998 899999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
++++++.+|+
T Consensus 112 ~~~~~~~~r~ 121 (292)
T 1xt8_A 112 ANFTQTPQRA 121 (292)
T ss_dssp SSCBCCHHHH
T ss_pred ecCCCCcchh
Confidence 8888888875
No 110
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.90 E-value=0.0021 Score=62.26 Aligned_cols=215 Identities=12% Similarity=0.014 Sum_probs=130.8
Q ss_pred eEEEEEEeccCC--CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh--cCcEEEEcCCCc
Q 008904 26 VLNVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME--TDTLAIVGPQSA 101 (549)
Q Consensus 26 ~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~--~~v~aiiGp~~s 101 (549)
..+||+++|... ++......+++-+.++. |+++.+. +...++....+.+.+++. +++++||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~~--~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRIL--YAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEEE--ECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEEE--ECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999753 23334556666666553 4555544 566677777778888888 588888764343
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCC-------CCCC-ceEEccCCcHHHHHHHHHHHHHcC------C-cEEEEEE
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSP-------LQYP-FFVQTAPNDLYLMSAIAEMVSYFG------W-GEVIAIF 166 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~-------~~~~-~~~r~~ps~~~~~~ai~~~l~~~~------W-~~v~ii~ 166 (549)
.....+...+...++|+|.+....+.... ..|+ ++..+.+.....+..+++.|...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44555566677889999987654332210 1122 256667778888888888887766 4 7898887
Q ss_pred ecCC--cccchHHHHHHHHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE-EEEEcchHHHHHHHHHHHHcC
Q 008904 167 NDDD--QGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 167 ~~~~--~g~~~~~~l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iil~~~~~~~~~il~~a~~~g 242 (549)
.... ......+.+.+.+++.|. .+.... ... .+.......++++-...+++ .|++++...+..+++++++.|
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G 228 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQLV--YGE--WNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELG 228 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEEe--eCC--CcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcC
Confidence 5432 334456778888888885 222222 211 12333344455543333332 234455567778999999999
Q ss_pred CCCCC-eEEEEeC
Q 008904 243 MMDSG-YVWIATT 254 (549)
Q Consensus 243 ~~~~~-~~~i~~~ 254 (549)
+..++ ...++.+
T Consensus 229 ~~vP~di~vvg~d 241 (350)
T 3h75_A 229 RKPGTDLLFSGVN 241 (350)
T ss_dssp CCBTTTBEEEEES
T ss_pred CCCCCCeEEEecC
Confidence 86544 3334433
No 111
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.88 E-value=0.001 Score=64.16 Aligned_cols=208 Identities=11% Similarity=-0.009 Sum_probs=120.9
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||-.....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 125 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 125 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 4456899999864 22222344455444443 2566544 45555666555566667778999888532221
Q ss_pred HHHHHHHhhh-hcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 103 MAHVLSHLAN-ELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~-~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.. .....+. ..++|+|......+. . ++...+.......+..+++.|...|.+++++|..... ......+.+
T Consensus 126 ~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf 199 (340)
T 1qpz_A 126 PE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 199 (340)
T ss_dssp CH-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHH
T ss_pred Ch-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHH
Confidence 11 1223333 368999987543221 1 1123455666667788888888889999999975432 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (549)
.+.+++.|+.+.....+... .+...-...++++.+. .++.|+. .+...+..+++++++.|+..++-+-
T Consensus 200 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~dis 269 (340)
T 1qpz_A 200 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVS 269 (340)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeE
Confidence 88888888764322112111 1223333445555443 4555554 4556677889999999986544333
No 112
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.88 E-value=0.0013 Score=61.74 Aligned_cols=211 Identities=9% Similarity=-0.045 Sum_probs=120.1
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiGp~~s 101 (549)
..+.-.||+++|...... .+...+..++++.=++ .|+.+.+. +...+.... ....+ +.++++++||-....
T Consensus 5 ~~~s~~Igvv~~~~~~~~-~~~~~~~~gi~~~a~~----~g~~~~~~--~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELM-GFTSQMVFGITEVLST----TQYHLVVT--PHIHAKDSM-VPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp --CCCEEEEECBCCCCSS-CHHHHHHHHHHHHHTT----SSCEEEEC--CBSSGGGTT-HHHHHHHHHTCCSEEEEESCC
T ss_pred cCCCCEEEEEecCCcccc-HHHHHHHHHHHHHHHH----cCCEEEEe--cCCcchhHH-HHHHHHHHcCCccEEEEecCC
Confidence 345678999999743111 2223333333333222 25655544 333333222 23333 445688877742222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
... .....+...++|+|......+ + +.+-.+.......+..+++.|...|-++++++..... ......+.+
T Consensus 77 ~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf 149 (288)
T 3gv0_A 77 PND-PRVRFMTERNMPFVTHGRSDM---G---IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGF 149 (288)
T ss_dssp TTC-HHHHHHHHTTCCEEEESCCCS---S---CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHH
T ss_pred CCc-HHHHHHhhCCCCEEEECCcCC---C---CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHH
Confidence 111 233455668999998754321 1 1223455677778888999999999999999976533 234566788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+.....+... .........++++.+. .++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 150 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 220 (288)
T 3gv0_A 150 NRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDI 220 (288)
T ss_dssp HHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEE
T ss_pred HHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 88899999876543222222 2334444556666544 345554 455566778999999999865543333
No 113
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.86 E-value=0.00021 Score=67.43 Aligned_cols=205 Identities=15% Similarity=0.072 Sum_probs=109.9
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. ..+......+++.+.++ .|+++.+. .++..++....+....++.+++++||.....
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 5 KKSSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp ---CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC
T ss_pred cccCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 34567899999853 22222333444433332 25555443 1444454444445556667789888863332
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l 179 (549)
.....+ ..+...++|+|......+ + + +..+.++....+..+++.|...|-+++++|.... .......+.|
T Consensus 76 ~~~~~~-~~l~~~~iPvV~~~~~~~---~---~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 147 (290)
T 3clk_A 76 LTDDNL-QLLQSSDVPYCFLSMGFD---D---D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGY 147 (290)
T ss_dssp ----CH-HHHHCC--CEEEESCC-----C---C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHH
T ss_pred CCHHHH-HHHHhCCCCEEEEcCCCC---C---C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHH
Confidence 222223 344567999998744321 1 2 3345567777788888998888999999997542 3345567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+++.|+.+.....+... ....+-...++++.+ ..++.|+. .+...+..+++++++.|+..++
T Consensus 148 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 148 KKALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 88898888764321111111 123333345555543 34555554 4555677789999999986544
No 114
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.84 E-value=0.0012 Score=62.15 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=119.3
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
...+.-.||++++.+.++......+++-+.++ .|+.+.+...+.. .. -.+....++.+++++||-....
T Consensus 8 ~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~--~~-~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 8 RQASSRLLGVVFELQQPFHGDLVEQIYAAATR--------RGYDVMLSAVAPS--RA-EKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -----CEEEEEEETTCHHHHHHHHHHHHHHHH--------TTCEEEEEEEBTT--BC-HHHHHHHHTTTTEEEEEEETCC
T ss_pred hcCCCCEEEEEEecCCchHHHHHHHHHHHHHH--------CCCEEEEEeCCCC--HH-HHHHHHHHHhCCCCEEEEECCC
Confidence 45567789999944333323344455444444 2566666554433 22 3445556667799988853322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~ 180 (549)
.....+.. +.. ++|+|......+ + +.+-.+..+....+...++.|...|-++|+++..... ......+.+.
T Consensus 77 ~~~~~~~~-~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~ 148 (289)
T 3k9c_A 77 FDTDELGA-LAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFL 148 (289)
T ss_dssp CCHHHHHH-HHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHH
T ss_pred CCHHHHHH-HHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHH
Confidence 22233333 344 999998754322 1 2233455677777888889998899999999986543 2345567788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.+++.|+.+.... +... .+...-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 149 ~al~~~g~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 217 (289)
T 3k9c_A 149 AAMDRHGLSASATV-VTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISV 217 (289)
T ss_dssp HHHHHTTCGGGEEE-ECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHCCCCCCccE-EECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 88888887632211 2221 2233444555555443 345543 455566778899999999875543333
No 115
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.83 E-value=0.00024 Score=66.94 Aligned_cols=209 Identities=13% Similarity=0.036 Sum_probs=123.1
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
..+.-+||+++|... .+......+++-+.++ .|+.+. +.+...++....+....++.+++++||-....
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARH--------KGYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 445678999998743 2222334455444444 255554 44555566666666667777899988853333
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
. .......+...++|+|......+ + +.+..+..+....+..+++.|...|-++++++..... ......+.+
T Consensus 75 ~-~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 147 (291)
T 3egc_A 75 G-EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGF 147 (291)
T ss_dssp S-CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHH
T ss_pred C-ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHH
Confidence 2 23344556677999998754322 1 2234455677778888999998899999999976532 334556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+......... .+.......+.++.+ ..++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 148 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 218 (291)
T 3egc_A 148 RAAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEI 218 (291)
T ss_dssp HHHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEE
T ss_pred HHHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 88888888754321111111 011112233344332 3455554 455667778899999999875443333
No 116
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=97.82 E-value=1.3e-05 Score=75.91 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=64.9
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC---CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
++|+|++.. .|+|+.... .++.+.||.+|+++++++.+ |++ ++++.. .|+.++..|.+|++|+++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVD-ANGKNQGFDVEIAKDLAKDLLGSPDK--VEFVLT-------EAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCGGG--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEcC--CCCCceEEC-CCCCEeehHHHHHHHHHHHhccCCce--EEEEEc-------cHHHHHHHHhCCCeeEEE
Confidence 568998753 567776644 46789999999999999999 999 999999 899999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
+++++|.+|+
T Consensus 123 ~~~~~~~~r~ 132 (291)
T 2yjp_A 123 ANFTQTPERA 132 (291)
T ss_dssp SSCBCCHHHH
T ss_pred eCCCCChHHH
Confidence 8888888875
No 117
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.79 E-value=0.00028 Score=67.98 Aligned_cols=204 Identities=11% Similarity=0.017 Sum_probs=119.2
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++. |+.+.+ .++..++....+....++.+++++||.....
T Consensus 57 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 57 SKKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp TC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred hCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44577899999863 333334556666555552 555544 4444455444445555666789888863322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-C--cccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D--QGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~-~--~g~~~~~~ 178 (549)
.....+ ..+...++|+|......+ +.. +..+.......+..+++.|...|.+++++|.... . ......+.
T Consensus 127 ~~~~~~-~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 199 (332)
T 2hsg_A 127 VTEEHV-EELKKSPVPVVLAASIES---TNQ---IPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKG 199 (332)
T ss_dssp CCHHHH-HHHTTSSSCEEEESCCCS---CTT---SCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHH-HHHHhCCCCEEEEccccC---CCC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHH
Confidence 222333 334567999998754321 111 2234456666778888888888999999998653 2 34556788
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
+.+.+++.|+.+.....+... .+...-...++++.+. .++.|+ +.+...+..+++++++.|+..+
T Consensus 200 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP 266 (332)
T 2hsg_A 200 YKRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVP 266 (332)
T ss_dssp HHHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 889999888754321111111 1223333445555433 456655 4555667788999999997543
No 118
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.77 E-value=0.0032 Score=58.59 Aligned_cols=208 Identities=10% Similarity=-0.007 Sum_probs=120.6
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
..+.-+||+++|... ..+...+..++++.=++ .|+.+.+ .+...++..-.+....++.+++++||-.....
T Consensus 4 ~~~s~~Igvi~~~~~---~~~~~~~~~gi~~~~~~----~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 4 TQSSKLIAVIVANID---DYFSTELFKGISSILES----RGYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp -CCCCEEEEEESCTT---SHHHHHHHHHHHHHHHT----TTCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCCcEEEEEeCCCC---chHHHHHHHHHHHHHHH----CCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 445678999998742 12223333333332222 2555554 44555666555666667777898888533333
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-c--ccchHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-Q--GRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~--g~~~~~~l 179 (549)
......+...++|+|......+ +...+ .+..+....+..+++.|...|-++++++..... . .....+.|
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 3444556678999998753322 21122 345677778888999999999999999987543 2 13445566
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
.+.+++.+. +. +...............+.++. ..++.|+ +.+...+..+++++++.|+..++-+-|.+
T Consensus 147 ~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 147 LAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 666666643 21 111100112334445555544 3444444 45666777889999999987655454443
No 119
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.77 E-value=0.00017 Score=67.50 Aligned_cols=206 Identities=9% Similarity=-0.016 Sum_probs=118.1
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
.+.-+||+++|.. ..+......+++-+.++ . |+.+.+...+ ++....+....++.+++++|| .....
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~ 70 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTP---K-----GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDI 70 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGG---G-----TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHH---C-----CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCC
Confidence 3457899999874 33333444454444433 2 5565554433 333333445556677899988 33322
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
....+.. .++|+|......+ .+...+ .+.......++.+++.|...|-++++++...........+.+.+.
T Consensus 71 ~~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~ 141 (280)
T 3gyb_A 71 PDFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEAT 141 (280)
T ss_dssp ------------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ChhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHH
Confidence 2222222 8999998754331 112223 344567777888999998899999999986554445566788888
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
+++.|+.+.... .... .........++++.+. .++.|+ +.+...+..++++++++|+..++ ...++.+
T Consensus 142 l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 142 MRAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 988887665332 2222 2233334444444332 355554 45566777889999999986544 3334433
No 120
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.73 E-value=0.00043 Score=65.14 Aligned_cols=208 Identities=9% Similarity=0.018 Sum_probs=119.3
Q ss_pred CCCceEEEEEEecc--CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 22 LKPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 22 ~~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
...+..+||+++|. +..+-.....+++-+.++ . |+.+.+...+...+.. .+....+..+++++||-..
T Consensus 7 ~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~ 76 (289)
T 3g85_A 7 NSQSKPTIALYWSSDISVNIISRFLRGLQSKLAK---Q-----NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIAN 76 (289)
T ss_dssp ----CCEEEEEEETTSCGGGHHHHHHHHHHHHHH---T-----TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESS
T ss_pred ccCCCceEEEEeccccchHHHHHHHHHHHHHHHH---c-----CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEec
Confidence 45667899999993 233333445555555544 2 4445444332222111 1222334456898888644
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
.......+... ...++|+|......+ .+-.+.......++.+++.|...|-++++++..... ......+
T Consensus 77 ~~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (289)
T 3g85_A 77 ISNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNK 147 (289)
T ss_dssp CCHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHH
T ss_pred CCcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHH
Confidence 44333333333 357899998754321 123455677778888999999999999999986533 2345677
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+.+++.|+.+.....+... .........++++-+. .++.|+ +.+...+..++++++++|+..++-+-|
T Consensus 148 gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 148 GFIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp HHHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 8888898888764321111111 1233444555555443 345554 455667778899999999875543333
No 121
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.73 E-value=0.0032 Score=59.27 Aligned_cols=212 Identities=9% Similarity=0.033 Sum_probs=119.4
Q ss_pred CCceEEEEEEeccCC--CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
....-.||+++|... .....+...+..++++.=++ .|+.+. +.++..++....+....+..+++++||-...
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~----~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ----HGYGTQ--TTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT----TTCEEE--ECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH----CCCEEE--EEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 345678999995421 00112223333333332222 255553 4454444444444445556678988885322
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
... ......+...++|+|......+ +.. ..+..+.......+...++.|...|-+++++|..... ......+.
T Consensus 78 ~~~-~~~~~~l~~~~iPvV~i~~~~~---~~~-~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (295)
T 3hcw_A 78 KEN-DPIKQMLIDESMPFIVIGKPTS---DID-HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQG 152 (295)
T ss_dssp CTT-CHHHHHHHHTTCCEEEESCCCS---SGG-GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHH
T ss_pred ccC-hHHHHHHHhCCCCEEEECCCCc---ccc-CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHH
Confidence 222 2334455678999998753221 110 0123344566667788888888889999999986543 23456678
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-----CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.+.+++.|+.+.... .. .+.......++++.+ ..++.|+ +.+...+..++++++++|+..++-+-|
T Consensus 153 f~~al~~~g~~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 224 (295)
T 3hcw_A 153 FETVASQFNLDYQIIE-TS----NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMT 224 (295)
T ss_dssp HHHHHHHTTCEEEEEE-EC----SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEE
T ss_pred HHHHHHHcCCCeeEEe-cc----CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 8888999998765221 11 123333333444322 1455554 456666788999999999875544443
No 122
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.72 E-value=0.0013 Score=63.57 Aligned_cols=210 Identities=7% Similarity=-0.035 Sum_probs=124.3
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|... ++......+++-+.+ + .|+.+. +.++..++..-.+....++.+++++||-....
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~---~-----~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLE---D-----TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHT---S-----SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHH---H-----CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 445678999998742 222233333333222 2 256654 44555666666666667777888887753222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC---CcccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~---~~g~~~~~~ 178 (549)
... .....+...++|+|....... . +....+..+...-+..+++.|...|-+++++|.... .......+.
T Consensus 135 ~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 207 (344)
T 3kjx_A 135 HSE-AARAMLDAAGIPVVEIMDSDG---K---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEG 207 (344)
T ss_dssp CCH-HHHHHHHHCSSCEEEEEECSS---C---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEeCCCC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHH
Confidence 122 334556678999998742111 1 222345566777788888888888999999998653 223455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
|.+.+++.|+.+.....+... .....-...++++-+ ..++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 208 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 208 FTEVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888899888765433222222 122333334444332 2455555 4556677888999999998765444443
No 123
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.71 E-value=0.00095 Score=62.95 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=123.3
Q ss_pred eEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC-ch-
Q 008904 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-AV- 102 (549)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s~- 102 (549)
.-+||+++|... .+-.....+++-+.++ .|+.+.+ .++..++....+....++.+++.+||-... +.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSE--------QGYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 378999999743 3333445555555544 2565554 455566766666777777889988885332 21
Q ss_pred --HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHH
Q 008904 103 --MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTAL 179 (549)
Q Consensus 103 --~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l 179 (549)
........+...++|+|......+. ...+ .+..+....++.+++.|...|-++++++..... ......+.+
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf 158 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAE---LAAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGF 158 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTT---CSSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCC---CCCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHH
Confidence 2334445566789999987543221 1222 344567777888999998899999999986543 233456778
Q ss_pred HHHHhhcCeEEEEEE--ccCCCCCCChhhHHHHHHHHhc-C-C--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 180 GDKLAEIRCKISYKS--ALPPDQSVTETDVRNELVKVRM-M-E--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~--~~~~~~~~~~~~~~~~l~~l~~-~-~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+++.|+.+.... ..... .........++++-+ . . ++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHTTCCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888888887543211 11100 000111233333322 2 2 45544 4556667789999999998755444443
No 124
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.69 E-value=0.0016 Score=61.70 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=121.7
Q ss_pred CCCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.....-.||+++|.. .++......+++-+.++ .|+.+.+ .++..++....+....++.+++++||-...
T Consensus 11 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 11 RHSRSGTIGLIVPDVNNAVFADMFSGVQMAASG--------HSTDVLL--GQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp ------CEEEEESCTTSTTHHHHHHHHHHHHHH--------TTCCEEE--EECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred hhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 445677899999864 33333445555555554 2555554 444555555555566667779998885433
Q ss_pred chHHH-HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 101 AVMAH-VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 101 s~~~~-~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
..... .+..+.+ ++|+|......+. ..+ .+.......+...++.|...|-++++++..... ......+
T Consensus 81 ~~~~~~~~~~l~~--~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 151 (303)
T 3kke_A 81 EDFDDDMLAAVLE--GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKE 151 (303)
T ss_dssp TTCCHHHHHHHHT--TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHH
T ss_pred CCCcHHHHHHHhC--CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHH
Confidence 32223 4444444 9999987543321 222 344566777888888888899999999985432 2345567
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-----hcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-----RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YV 249 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-----~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~ 249 (549)
.+.+.+++.|+.+......... .....-...++++ .+. .++.|+ +.+...+..+++++++.|+..++ ..
T Consensus 152 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~ 228 (303)
T 3kke_A 152 GYLETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDLS 228 (303)
T ss_dssp HHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceE
Confidence 7888888888764321111111 1233334455555 433 345544 45556677889999999986544 33
Q ss_pred EEEe
Q 008904 250 WIAT 253 (549)
Q Consensus 250 ~i~~ 253 (549)
.++.
T Consensus 229 vig~ 232 (303)
T 3kke_A 229 IVGI 232 (303)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 125
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.67 E-value=0.0015 Score=61.64 Aligned_cols=210 Identities=9% Similarity=-0.025 Sum_probs=119.2
Q ss_pred CceEEEEEEecc-----CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC
Q 008904 24 PEVLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 98 (549)
Q Consensus 24 ~~~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp 98 (549)
...-+||+++|. +..+......+++-+.++ .|+.+.+...+. .. ...+....+..+++++||-.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~-~~--~~~~~~~~l~~~~vdGiIi~ 72 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEP-GE--KYQSLIHLVETRRVDALIVA 72 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECT-TC--CCHHHHHHHHHTCCSEEEEC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCC-hh--hHHHHHHHHHcCCCCEEEEe
Confidence 345689999983 222222334444444443 256777665543 11 11222233445688888853
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~ 176 (549)
...... .....+...++|+|...... .+ +.+-.+.......+...++.|...|-++++++..... ......
T Consensus 73 ~~~~~~-~~~~~l~~~~iPvV~~~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 73 HTQPED-FRLQYLQKQNFPFLALGRSH---LP---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp SCCSSC-HHHHHHHHTTCCEEEESCCC---CS---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCCh-HHHHHHHhCCCCEEEECCCC---CC---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 322212 33345567799999875432 11 1233455677777888889998899999999986543 234556
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 253 (549)
+.+.+.+++.|+.+......... .+...-...++++-+. .++.|+ +++...+..+++++++.|+..++ ...++.
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~ 222 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAY 222 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEE
T ss_pred HHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 78888898888754211101111 1233333444544433 445544 45566777899999999987554 344444
Q ss_pred C
Q 008904 254 T 254 (549)
Q Consensus 254 ~ 254 (549)
+
T Consensus 223 D 223 (294)
T 3qk7_A 223 D 223 (294)
T ss_dssp T
T ss_pred c
Confidence 4
No 126
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.66 E-value=0.0037 Score=60.69 Aligned_cols=211 Identities=9% Similarity=0.052 Sum_probs=121.5
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|... .+......+++-+.++ .|+.+.+ .++..++....+....++.+++++||-....
T Consensus 67 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 136 (355)
T 3e3m_A 67 TKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLLL--GYTAYSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp ----CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 344567999998743 2112233444443333 2566544 4555566665566666777888887753222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc---ccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~---g~~~~~~ 178 (549)
... .....+...++|+|...... .. +....+..+...-+..+++.|...|-+++++|...... .....+.
T Consensus 137 ~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~G 209 (355)
T 3e3m_A 137 HTE-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAG 209 (355)
T ss_dssp CCH-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHH
Confidence 222 33445667899999863211 11 22235566777778888888888999999999875432 3456778
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++.|+.+.....+.... .....-...++++.+ ..++.|+ +.+...+..+++.+++.|+..++-+-|.
T Consensus 210 f~~al~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 210 FKRAMREAGLNPDQEIRLGAPP-LSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHHHHTTSCSCCEEEESCSS-CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHHCCcCCCccEEEecCC-CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8889999887643211111110 122233334444432 3455544 4556677788999999998755444443
No 127
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.62 E-value=0.00059 Score=65.65 Aligned_cols=203 Identities=8% Similarity=0.001 Sum_probs=118.1
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++|| ....
T Consensus 57 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~ 125 (330)
T 3ctp_A 57 TKNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRS 125 (330)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETC
T ss_pred cCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCC
Confidence 34567899999864 22223344555544443 2566554 45555666656666677778999998 4332
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
... ..+...++|+|.+....+ + ..+ .+.......+..+++.|...|-++|++|..... ......+.+
T Consensus 126 ~~~----~~l~~~~iPvV~~~~~~~---~-~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 194 (330)
T 3ctp_A 126 QCE----DEYANIDIPVVAFENHIL---D-NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGF 194 (330)
T ss_dssp CCS----GGGTTCCSCEEEESSCCC---T-TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHH
T ss_pred CCH----HHHHhcCCCEEEEeccCC---C-CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHH
Confidence 211 234567999998754322 1 222 344566666788888888889999999986532 344566778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+. ...+... .....-...++++.+ ..++.|+. .+...+..+++++++.|+..++-+-+
T Consensus 195 ~~al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 195 LDGARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp HHHHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 888999887654 2222211 111111112223222 24566554 44556777899999999865543433
No 128
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.61 E-value=0.0037 Score=60.51 Aligned_cols=206 Identities=11% Similarity=0.020 Sum_probs=115.1
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||-.....
T Consensus 64 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 133 (348)
T 3bil_A 64 SRSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEE 133 (348)
T ss_dssp ----CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGG
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4466799999863 22222334444444443 2555544 34445665555555666777898888644333
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
.... ...+...++|+|......+. ....+ .+..+....+..+++.|...|-++|++|..... ......+.+.
T Consensus 134 ~~~~-~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 207 (348)
T 3bil_A 134 CANQ-LEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFK 207 (348)
T ss_dssp GHHH-HHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHH
T ss_pred ChHH-HHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 2222 33445679999987542211 01222 344566666788888888889999999975432 2345567788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEE
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (549)
+.+++.|+..... +... ....+-...++++.+...- .|++.+...+..+++++++.|+..++-+-
T Consensus 208 ~al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP~dis 272 (348)
T 3bil_A 208 AACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIGKDVS 272 (348)
T ss_dssp HHHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBTTTBE
T ss_pred HHHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCCCCeE
Confidence 8888888632111 1111 1223333445554433322 44455666678899999999986544333
No 129
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.58 E-value=0.0021 Score=59.89 Aligned_cols=202 Identities=10% Similarity=0.040 Sum_probs=112.1
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
..+.-+||+++|... .+......+++-+.++ . |+.+.+ .+...++....+....++.+++++||-...+
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~ 74 (277)
T 3e61_A 5 KRKSKLIGLLLPDMSNPFFTLIARGVEDVALA---H-----GYQVLI--GNSDNDIKKAQGYLATFVSHNCTGMISTAFN 74 (277)
T ss_dssp -----CEEEEESCTTSHHHHHHHHHHHHHHHH---T-----TCCEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECGGG
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH---C-----CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 345678999998742 2222334444444443 2 455544 4555566665666666777899988864322
Q ss_pred hHHHHHHH-hhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 102 VMAHVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~-~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
... .. .+...++|+|.+....+. +. .+.......+..+++.|...|-++++++..... ......+.
T Consensus 75 --~~~-~~~~l~~~~iPvV~~~~~~~~------~~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 143 (277)
T 3e61_A 75 --ENI-IENTLTDHHIPFVFIDRINNE------HN--GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQG 143 (277)
T ss_dssp --HHH-HHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHH
T ss_pred --hHH-HHHHHHcCCCCEEEEeccCCC------CC--eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHH
Confidence 222 34 566779999997543321 11 556677778888999998899999999985432 33455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++.|+.+.. ...... .....+.. +.+ ...++.|+ +.+...+..++++++++|+..++-+-|.
T Consensus 144 f~~~l~~~~~~~~~-~~~~~~--~~~~~~~~-l~~--~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 144 IKYILDQQRIDYKM-LEATLL--DNDKKFID-LIK--ELSIDSII-CSNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHHHC---CEEE-EEGGGG--GSHHHHHH-HHH--HHTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCccc-eecCCC--CHHHHHHH-hhc--CCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 88888888876654 211111 11222222 222 13455554 4555677788999999998755444443
No 130
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.56 E-value=0.0037 Score=60.22 Aligned_cols=207 Identities=9% Similarity=0.019 Sum_probs=122.1
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~ 100 (549)
....-.||+++|.. .++......+++-+.++ .|+.+. +.++..++..-.+....++.+++++||- |..
T Consensus 59 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 59 SAKSRTVLVLIPSLANTVFLETLTGIETVLDA--------AGYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp ----CEEEEEESCSTTCTTHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34566899999874 33334455666655555 256554 4555666666666666777788888774 322
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTAL 179 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l 179 (549)
... .....+...++|+|...... .. +.. .+..+....+..+++.|...|-++++++..... ......+.+
T Consensus 129 ~~~--~~~~~l~~~~iPvV~~~~~~---~~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf 199 (339)
T 3h5o_A 129 HAE--PFERILSQHALPVVYMMDLA---DD---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGY 199 (339)
T ss_dssp CCT--THHHHHHHTTCCEEEEESCC---SS---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHH
T ss_pred CCH--HHHHHHhcCCCCEEEEeecC---CC---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHH
Confidence 221 33445567899999874321 11 122 555677777888888888899999999986542 233456678
Q ss_pred HHHHhhcCeEEEE-EEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISY-KSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.... ....... .....-...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 200 ~~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 271 (339)
T 3h5o_A 200 RAALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAI 271 (339)
T ss_dssp HHHHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEE
Confidence 8888888762110 1111111 122333344444433 2455554 455667788899999999876544433
No 131
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.50 E-value=0.017 Score=53.50 Aligned_cols=205 Identities=11% Similarity=0.091 Sum_probs=113.7
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|.- .++-.....+++-+.++. |+.+-+ .++..++..-.+....++.++++++|- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589988763 222223344444444442 455543 445556655555556667778998874 33332222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.....+...++|+|......+ +. +....+......-++..++.|... +-+++++|..... ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 223444567999998743221 11 111234455666677777777665 5689999985432 22445667888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+++.|+.+..... . . .+...-...++++-+ ..++. |++.+...+..+++++++.|+ .+...++.+
T Consensus 148 al~~~g~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 148 AVAAHKFNVLASQP-A-D--FDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHTCEEEEEEE-C-T--TCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHhcCCCEEEEecC-C-C--CCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 88888887643221 1 1 122222333444332 23444 444556667888999999887 344444443
No 132
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.49 E-value=0.0045 Score=61.44 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=120.3
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....-.||+++|.+.++......+++-+.++. |+.+.+...+... +....+..++|++||-...
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~- 85 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD- 85 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT-
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC-
Confidence 455678999999865444334555665555553 4555554433221 1234455668888886322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc----ccchHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ----GRNGVT 177 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~----g~~~~~ 177 (549)
...+...+...++|+|......+... ..+.+-.+.......+..+++.|...|-+++++|...... .....+
T Consensus 86 --~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 86 --DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp --CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred --ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 23344556678999998754322110 1123445566777778888999999999999999865432 345677
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-hc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
.+.+.+++.|+........... ..+.......+.++ +. ..++.|+ +.+...+..+++.+++.|+..++ ...++.+
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 8888898888754322111111 01122223333333 32 3455544 45666777888999999986544 4444444
No 133
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.49 E-value=0.0093 Score=55.43 Aligned_cols=200 Identities=8% Similarity=-0.062 Sum_probs=113.7
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.- ..+......+++-+.++ .|+.+.+... ..++..-. ++ ++++||-....
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~--~~~~~~~~----~~---~vdgiI~~~~~ 67 (277)
T 3cs3_A 5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCSG--KKSHLFIP----EK---MVDGAIILDWT 67 (277)
T ss_dssp CCCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEES--TTTTTCCC----TT---TCSEEEEECTT
T ss_pred ccCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEeC--CCCHHHHh----hc---cccEEEEecCC
Confidence 44567899999863 22222334444433332 2566655433 22221100 01 67777642222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+. .+...++|+|......+ + +.+..+..+....+..+++.|...|-+++++|..+.. ......+.+
T Consensus 68 ~~~~~~~-~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 140 (277)
T 3cs3_A 68 FPTKEIE-KFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVS 140 (277)
T ss_dssp SCHHHHH-HHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHH
T ss_pred CCHHHHH-HHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHH
Confidence 1223333 34558999998743221 1 2344556677777888888888889999999986532 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC---CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+++.|+.+. ... . . .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+.|.
T Consensus 141 ~~~l~~~g~~~~-~~~-~-~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 141 TRELTRFGIPYE-IIQ-G-D--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHHTTCCEE-EEE-C-C--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHHcCCCee-EEe-C-C--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 888888887665 211 1 1 1233334455665444 345544 4555667788899999887655545444
No 134
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.45 E-value=0.0025 Score=59.43 Aligned_cols=201 Identities=8% Similarity=0.025 Sum_probs=122.0
Q ss_pred CCCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
...+.-+||+++|... ++......+++-+.++ . |+.+ +.+.++..++..-.+....++.+++++||-..
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~- 75 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQK---E-----GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA- 75 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHH---T-----TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHH---C-----CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-
Confidence 3456778999998743 2222334444444443 2 5550 33456666666666666677778898888533
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.....+...++|+|.....+ ..+ +.+ .+.......+...++.|. .|-++++++..... ......+.
T Consensus 76 -----~~~~~~~~~~iPvV~~~~~~--~~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 76 -----FTIPPNFHLNTPLVMYDSAN--IND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp -----CCCCTTCCCSSCEEEESCCC--CCS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred -----hHHHHHHhCCCCEEEEcccc--cCC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 11223456799999875430 111 223 666777777888888888 99999999986532 33455678
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++.|+.+... ..... .+ ...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 144 f~~~l~~~g~~~~~~-~~~~~----~~--~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETPEN----NP--YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECCSS----CH--HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCCC-CccCC----ch--HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888899999877654 33222 11 334444433 2345543 4555667788999999998755444443
No 135
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.38 E-value=0.032 Score=52.07 Aligned_cols=209 Identities=10% Similarity=0.009 Sum_probs=116.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH-H
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM-A 104 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~-~ 104 (549)
+||+++|.. .++-.....+++.+.++. |+.+.+....+..++..-.+....++.++|++||- +..... .
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 689998863 222223344444444442 44554432114556655555566677789998874 333322 2
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCC---C--CceEEccCCcHHHHHHHHHHHHHc-C--CcEEEEEEecCCc--ccc
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQ---Y--PFFVQTAPNDLYLMSAIAEMVSYF-G--WGEVIAIFNDDDQ--GRN 174 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~---~--~~~~r~~ps~~~~~~ai~~~l~~~-~--W~~v~ii~~~~~~--g~~ 174 (549)
..+. .+...++|+|...... .+.. + +..-.+......-++..++.|... | -+++++|...... ...
T Consensus 75 ~~~~-~~~~~~iPvV~~~~~~---~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~ 150 (288)
T 1gud_A 75 MPVA-RAWKKGIYLVNLDEKI---DMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEA 150 (288)
T ss_dssp HHHH-HHHHTTCEEEEESSCC---CHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHH
T ss_pred HHHH-HHHHCCCeEEEECCCC---CcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhH
Confidence 2333 3445799999874321 1100 0 110235566666777788887776 8 8999999854322 234
Q ss_pred hHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 175 GVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 175 ~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
..+.+.+.+++. |+.+.....-. .....-...++++.+ ..++.|+ +.+...+.-+++++++.|+. .+...+
T Consensus 151 R~~Gf~~al~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~vv 224 (288)
T 1gud_A 151 RRNGATEAFKKASQIKLVASQPAD----WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLVV 224 (288)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEeecCC----ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEEE
Confidence 566788888877 87664422111 122333334444432 2345444 45556678899999999974 455555
Q ss_pred EeC
Q 008904 252 ATT 254 (549)
Q Consensus 252 ~~~ 254 (549)
+.+
T Consensus 225 GfD 227 (288)
T 1gud_A 225 GTD 227 (288)
T ss_dssp EES
T ss_pred EeC
Confidence 554
No 136
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.32 E-value=0.0041 Score=58.87 Aligned_cols=209 Identities=10% Similarity=0.049 Sum_probs=119.3
Q ss_pred CCCceEEEEEEeccC------CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEE
Q 008904 22 LKPEVLNVGAIFSFG------TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAI 95 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~ai 95 (549)
.....-+||+++|.. ..+......+++-+.++. |+.+. +.++..++....+....+..+++++|
T Consensus 18 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgi 87 (305)
T 3huu_A 18 ITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGF 87 (305)
T ss_dssp ---CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEE
T ss_pred hhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEE
Confidence 345567899999972 222223345555444442 45544 44544444444444455566789888
Q ss_pred EcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--cc
Q 008904 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GR 173 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~ 173 (549)
|-....... .....+...++|+|...... .. +.+..+.......+...++.|...|-++|++|...... ..
T Consensus 88 Ii~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~ 160 (305)
T 3huu_A 88 ILLYSLKDD-PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTE 160 (305)
T ss_dssp EESSCBTTC-HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHH
T ss_pred EEeCCcCCc-HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhH
Confidence 753222222 33445567899999875332 11 12234556677778888899988999999999865432 34
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-hc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eE
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YV 249 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~ 249 (549)
...+.+.+.+++.|+.+.. . +... ... -...++++ -+ ..++.|+ +.+...+..+++++++.|+..++ ..
T Consensus 161 ~R~~Gf~~~l~~~g~~~~~-~-~~~~---~~~-~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~ 233 (305)
T 3huu_A 161 DRSVGFKQYCDDVKISNDC-V-VIKS---MND-LRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQ 233 (305)
T ss_dssp HHHHHHHHHHHHTTCCCCE-E-EECS---HHH-HHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHHHHcCCCccc-E-EecC---cHH-HHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceE
Confidence 5567788888888876543 1 1111 111 23334444 22 2445554 45566777889999999986544 33
Q ss_pred EEEeC
Q 008904 250 WIATT 254 (549)
Q Consensus 250 ~i~~~ 254 (549)
.++.+
T Consensus 234 vig~D 238 (305)
T 3huu_A 234 TATFN 238 (305)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 44443
No 137
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.29 E-value=0.0098 Score=57.05 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=118.3
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|... ++......+++-+.++. |+.+.+.. +.. +..-.+....++.+++++||-...
T Consensus 61 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~--~~~-~~~~~~~~~~l~~~~vdGiIi~~~- 128 (333)
T 3jvd_A 61 EHRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVAE--ANS-VQAQDVVMESLISIQAAGIIHVPV- 128 (333)
T ss_dssp ---CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEEE--CCS-HHHHHHHHHHHHHHTCSEEEECCC-
T ss_pred cCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEEC--CCC-hHHHHHHHHHHHhCCCCEEEEcch-
Confidence 345678999998742 22233455555555542 55655543 333 444445555666779998886433
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
...+...++|+|......+ +...+ .+..+....+..+++.|...|-+++++|..... ......+.+
T Consensus 129 ------~~~~~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 196 (333)
T 3jvd_A 129 ------VGSIAPEGIPMVQLTRGEL---GPGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGI 196 (333)
T ss_dssp ------TTCCC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHH
T ss_pred ------HHHHhhCCCCEEEECccCC---CCCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 3345567999998754322 11223 344566677788888888889999999986533 234557788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-CeEEEEEcchHHHHHHHHHHHHcCCCCCCeE-EEEeC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 254 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~il~~a~~~g~~~~~~~-~i~~~ 254 (549)
.+.+++.|+.... .... .+...-...++++.+.. ++.|+ +.+...+..+++++++.|+..++-+ .++.+
T Consensus 197 ~~al~~~g~~~~~--~~~~---~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 197 SHAASIYGAEVTF--HFGH---YSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHHHTTCEEEE--EECC---SSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHCCCCEEE--ecCC---CCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 8889999987211 1011 12333344455544333 55554 4555667788999999998654433 34433
No 138
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.28 E-value=0.014 Score=53.49 Aligned_cols=199 Identities=11% Similarity=0.004 Sum_probs=116.3
Q ss_pred EEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 27 LNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
-+||+++|... ++......+++-+.++. |+.+.+ .++..++..-.+....+..++++++|-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH
Confidence 36899998632 22223345555444442 455544 34445565555555566677888877532211111
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec--C-CcccchHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--D-DQGRNGVTALGDK 182 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~--~-~~g~~~~~~l~~~ 182 (549)
..+...++|+|...... +.+..+.......+..+++.|...|-++|+++... + .......+.+.+.
T Consensus 73 ---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp ---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred ---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 23445689999874321 12234556677778888888888899999999854 2 2345567788889
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++.|+.+.. +... .....-...++++....++.|+ +.+...+..+++++++.|+ .+...++.+
T Consensus 142 l~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 142 CKAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 9988875432 1211 1223333344444334556554 4555677888999999987 444444443
No 139
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.26 E-value=0.013 Score=55.98 Aligned_cols=206 Identities=7% Similarity=-0.032 Sum_probs=120.5
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCch
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 102 (549)
+..+||+++|.. ..+......+++-+.++ .|+++.+ .++..++..-.+....++.+++.+||- |....
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQE--------AGYKTDL--QYADDDIPNQLSQIENMVTKGVKVLVIASIDGT 71 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHHTCSEEEECCSSGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHH--------cCCEEEE--eeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCch
Confidence 356899999975 33223445555555554 2555544 446677777777778888889998885 44444
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-------cCCcEEEEEEecCC--ccc
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-------FGWGEVIAIFNDDD--QGR 173 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-------~~W~~v~ii~~~~~--~g~ 173 (549)
........+...++|+|.+....+.. .... ..+.......++.+++.|.. .|-++++++..... ...
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 44445556677899999875433211 1112 33445667777888888777 68889999865332 233
Q ss_pred chHHHHHHHHhhc---C-eEEEEEE-----ccCCCCCCChhhHHHHHHHHhc-----CCCeEEEEEcchHHHHHHHHHHH
Q 008904 174 NGVTALGDKLAEI---R-CKISYKS-----ALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQ 239 (549)
Q Consensus 174 ~~~~~l~~~~~~~---g-~~v~~~~-----~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~il~~a~ 239 (549)
...+.+.+.+++. | +.+.... ..... .....-...++++-. ..++.| ++.+...+..++++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~nd~~A~g~~~al~ 224 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAV-LSPYDGLSIGIISSLK 224 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEE-ECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEE-EECCCchHHHHHHHHH
Confidence 4556777777765 3 4433210 00011 112222333333332 344544 3455566778999999
Q ss_pred HcCCCCCC
Q 008904 240 RLGMMDSG 247 (549)
Q Consensus 240 ~~g~~~~~ 247 (549)
++|+..+.
T Consensus 225 ~~g~~vP~ 232 (330)
T 3uug_A 225 GVGYGTKD 232 (330)
T ss_dssp HTTCSSSS
T ss_pred HcCCCCCC
Confidence 99986543
No 140
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.22 E-value=0.054 Score=51.43 Aligned_cols=207 Identities=12% Similarity=-0.003 Sum_probs=107.9
Q ss_pred ceEEEEEEecc---CC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 25 EVLNVGAIFSF---GT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 25 ~~i~IG~l~~~---~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
++.+||+++|. +. ++-.....+++.+.++ .|+++.+. ++.. .....+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~--------~g~~~~~~--~~~~-~~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQE--------NNAKCKYV--TAST-DAEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHH--------TTCEEEEE--ECCS-GGGHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHH--------hCCeEEEE--eCCC-HHHHHHHHHHHHHcCCCEEEECCh
Confidence 45789999982 22 2222333444444443 14555443 3322 223345556677788998887432
Q ss_pred chHHHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHH----HHHHHHcCC-cEEEEEEecC-Cccc
Q 008904 101 AVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI----AEMVSYFGW-GEVIAIFNDD-DQGR 173 (549)
Q Consensus 101 s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai----~~~l~~~~W-~~v~ii~~~~-~~g~ 173 (549)
.. ...+..++..+ ++|++......+ + .+.+-.+.. +..++..+ +..+...|- ++|++|.... ....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 22344555543 899998643211 0 122222222 23333333 466666676 8999997543 2234
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.....+.+.+++.|..+.....+... ......-....+++.+.++++|+.. ....+.-++++++++|+. +.-++++
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 45667778888777543322222211 0112223344555545568876554 444566778888887766 4444544
No 141
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.18 E-value=0.033 Score=53.71 Aligned_cols=206 Identities=9% Similarity=-0.002 Sum_probs=110.9
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCC-hHHHHHHHHHHHhcCcEEEEc--C
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFN-GFLSIMGALQFMETDTLAIVG--P 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~-~~~a~~~~~~l~~~~v~aiiG--p 98 (549)
......||+++|.-. .+......+++-+.++ .|+.+.+. +...+ +..-.+....++.+++++||- +
T Consensus 58 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 58 GKQSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp ----CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred cCCCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 345678999998632 2212233444433333 25666553 33332 333334455566778887764 4
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~ 176 (549)
..... .+...+...++|+|...... +...+ .+......-+...++.|...|-++|++|..... ......
T Consensus 128 ~~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~ 198 (349)
T 1jye_A 128 LDDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRL 198 (349)
T ss_dssp CCHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHH
T ss_pred CCChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHH
Confidence 33322 22233445789999874321 11223 234455556677778887789999999986432 234456
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.|.+.+++.|+.+..... . . .....-...+.++... .++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 199 ~Gf~~al~~~gi~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 199 AGWHKYLTRNQIQPIAERE-G-D--WSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHHHTTCCCSEEEE-C-C--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHHcCCCcccccc-C-C--CChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 7788888888875432211 1 1 1122222334443332 355554 4455667788999999998655444443
No 142
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.14 E-value=0.0009 Score=63.35 Aligned_cols=207 Identities=10% Similarity=0.011 Sum_probs=120.3
Q ss_pred CCCceEEEEEEeccCC-CCch-HHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 22 LKPEVLNVGAIFSFGT-VNGQ-VSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-~~g~-~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
.....-+||+++|... .+-. ....+++-+.++ .|+.+.+ .++..++....+....++.+++++||-..
T Consensus 9 ~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 78 (301)
T 3miz_A 9 RSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANA--------NGKTILI--ANTGGSSEREVEIWKMFQSHRIDGVLYVT 78 (301)
T ss_dssp ---CCCEEEEEESSTTTCCSCHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred hhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 4556778999998753 3333 556666666655 2566554 44555666666666667778888887422
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~ 177 (549)
..... ....+...++|+|......+.. .. +..+.......+..+++.|...|-++|+++...... .....+
T Consensus 79 ~~~~~--~~~~~~~~~iPvV~~~~~~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 151 (301)
T 3miz_A 79 MYRRI--VDPESGDVSIPTVMINCRPQTR--EL---LPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLD 151 (301)
T ss_dssp EEEEE--CCCCCTTCCCCEEEEEEECSST--TS---SCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHH
T ss_pred CCccH--HHHHHHhCCCCEEEECCCCCCC--CC---CCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHH
Confidence 22111 3344566799999875432211 01 223456677778888999999999999999865432 335567
Q ss_pred HHHHHHhhcCeEEEEEEccCC---CCCCChhhH-HHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 178 ALGDKLAEIRCKISYKSALPP---DQSVTETDV-RNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~---~~~~~~~~~-~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+.+++.|+.+.....+.. .. ...... ...++++.+. .++.|+ +.+...+..+++++++.|+..++
T Consensus 152 Gf~~al~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 225 (301)
T 3miz_A 152 AFRRTTSEFGLTENDLSISLGMDGPV-GAENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQ 225 (301)
T ss_dssp HHHHHHHHHTCCGGGEEEEECEESST-TSCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHcCCCCCcceEEEcCCCCc-CccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 788888888865321111111 10 111111 1334444332 455554 45556677889999998876433
No 143
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.01 E-value=0.14 Score=47.89 Aligned_cols=196 Identities=10% Similarity=-0.036 Sum_probs=104.5
Q ss_pred ceEEEEEEecc--CC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSF--GT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~--~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
++.+||+++|. +. ++-.....+++.+.++ .|+++. +.++..++....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSN--------LDVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHH--------SCCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHH--------hCCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 45789999973 22 3334445555555444 245543 44444444444455566777899999985433
Q ss_pred hHHHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-CCcEEEEEEecCCcccchHHHH
Q 008904 102 VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-GWGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~W~~v~ii~~~~~~g~~~~~~l 179 (549)
. ...+..++..+ ++|++...... .. +.+-.+......-+.....++.++ +-++|++|...... . ....+
T Consensus 74 ~-~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~Gf 144 (296)
T 2hqb_A 74 F-AEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEGF 144 (296)
T ss_dssp H-HHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHHH
T ss_pred H-HHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHHH
Confidence 2 23345555544 78998764321 11 222223333333333333334342 45899999854322 2 67778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
.+.+++.|.. .....+... ......-....+++.+.++++|+. .....+.-+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 8888888764 322222211 011222334455555556776554 44455667888888877
No 144
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.00 E-value=0.11 Score=50.06 Aligned_cols=206 Identities=15% Similarity=0.048 Sum_probs=110.0
Q ss_pred ccCCCCceEEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEE
Q 008904 19 QGALKPEVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAI 95 (549)
Q Consensus 19 ~~~~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~ai 95 (549)
.++...++++||++++-. ..+-.....+++.+.++. |-++++.+.++..+.....+...+++++++.+|
T Consensus 19 ~~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~--------G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~I 90 (356)
T 3s99_A 19 PGSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEAL--------GDKVETTFLENVAEGADAERSIKRIARAGNKLI 90 (356)
T ss_dssp -------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHH--------TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEE
T ss_pred cccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHh--------CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEE
Confidence 333567889999999742 222233455555555554 223566666665555555677778888899999
Q ss_pred EcCCCchHHHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-ccc
Q 008904 96 VGPQSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGR 173 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~ 173 (549)
|+.. .....++..++..+ ++|++......+ . +.-..++++..- ...++-.++.++.+ =++|++|..... .-.
T Consensus 91 i~~g-~~~~~~~~~vA~~~Pdv~fv~id~~~~-~-~Nv~sv~~~~~e-g~ylaG~~A~~~tk--~~kIGfVgg~~~p~v~ 164 (356)
T 3s99_A 91 FTTS-FGYMDPTVKVAKKFPDVKFEHATGYKT-A-DNMSAYNARFYE-GRYVQGVIAAKMSK--KGIAGYIGSVPVPEVV 164 (356)
T ss_dssp EECS-GGGHHHHHHHHTTCTTSEEEEESCCCC-B-TTEEEEEECHHH-HHHHHHHHHHHHCS--SCEEEEEECCCCHHHH
T ss_pred EECC-HHHHHHHHHHHHHCCCCEEEEEecccc-C-CcEEEEEechhH-HHHHHHHHHHHhcC--CCEEEEECCCccHHHH
Confidence 9864 33445566776665 788887532211 1 111123333221 11222223333332 379999985432 222
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
.....|...++..+..+.....+... ..+...-.+..+.+-+.++++|+...+.. -++++|++.|
T Consensus 165 ~~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~G 229 (356)
T 3s99_A 165 QGINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRG 229 (356)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcC
Confidence 34556677777665443322222211 01223334555666667899887766553 5788888876
No 145
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.72 E-value=0.03 Score=54.38 Aligned_cols=209 Identities=8% Similarity=-0.017 Sum_probs=113.3
Q ss_pred CCceEEEEEEeccCCC--CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
....-.||+++|.... ....+...+..++++.=+ |+.+.+...+...+. .-.+....+..+++++||-...
T Consensus 65 ~~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 65 TRRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp ---CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESC
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecC
Confidence 3456789999997421 111233333334443211 566766655433221 2233344555667877764222
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec------------
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND------------ 168 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~------------ 168 (549)
..... ....+...++|+|..... ......+ .+......-+..+++.|...|-+++++|...
T Consensus 138 ~~~~~-~~~~l~~~~iPvV~i~~~---~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~ 210 (366)
T 3h5t_A 138 AKGDP-HIDAIRARGLPAVIADQP---AREEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTR 210 (366)
T ss_dssp CTTCH-HHHHHHHHTCCEEEESSC---CSCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCH
T ss_pred CCChH-HHHHHHHCCCCEEEECCc---cCCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccc
Confidence 22222 234445679999987432 1112223 3445677778888888988999999999832
Q ss_pred -------CCcccchHHHHHHHHhhcCeEEEE--EEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHH
Q 008904 169 -------DDQGRNGVTALGDKLAEIRCKISY--KSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDV 237 (549)
Q Consensus 169 -------~~~g~~~~~~l~~~~~~~g~~v~~--~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~ 237 (549)
........+.+.+.+++.|+.+.. ...... .....-...++++.+ ..++.|+. .+...+..++++
T Consensus 211 ~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~a 286 (366)
T 3h5t_A 211 ERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWI---NNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEY 286 (366)
T ss_dssp HHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESS---CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCC---CCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHH
Confidence 222345567888888888875321 000111 112232334444432 24555544 555667788999
Q ss_pred HHHcCCCCCCeE
Q 008904 238 AQRLGMMDSGYV 249 (549)
Q Consensus 238 a~~~g~~~~~~~ 249 (549)
+++.|+..++-+
T Consensus 287 l~~~G~~vP~di 298 (366)
T 3h5t_A 287 LKSVGKSAPADL 298 (366)
T ss_dssp HHHTTCCTTTTC
T ss_pred HHHcCCCCCCce
Confidence 999998755433
No 146
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=95.99 E-value=0.3 Score=46.59 Aligned_cols=217 Identities=12% Similarity=0.037 Sum_probs=124.6
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCC-----CCceEEEEEecCCCChH-----HHHHHHHHHHhc-Cc
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL-----GGRKLSITMHDAKFNGF-----LSIMGALQFMET-DT 92 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il-----~g~~l~~~~~d~~~~~~-----~a~~~~~~l~~~-~v 92 (549)
..+++||++...-+. .....++++-.+++-|..+... ....++.++..+-.+++ .+++...++... ++
T Consensus 10 ~~~~~igi~t~t~s~-se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLSE-NKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcCC-CHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 357999998876432 3567888899999998754321 01234455554333332 234455555554 78
Q ss_pred EEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC--CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 008904 93 LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD 170 (549)
Q Consensus 93 ~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~ 170 (549)
.+||.-............+...+++.|-+.+....-.. ..+.. +.+......-+...++.|...|-+++++|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 88776433322233345566666766554332111000 00111 2455566666777889999999999999986443
Q ss_pred c----ccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhH---HHHHHH-----HhcCCCeEEEEEcchHHHHHHHHHH
Q 008904 171 Q----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDV---RNELVK-----VRMMEARVIVVHGYSRTGLMVFDVA 238 (549)
Q Consensus 171 ~----g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~---~~~l~~-----l~~~~~~viil~~~~~~~~~il~~a 238 (549)
. .....+-+++++++.|+.+.......+ .....+ ..+|.. ++......-|++++...+..+++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~---t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ikal 244 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI---NTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTKA 244 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC---SSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCC---chHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHHH
Confidence 2 223566788999999997755432111 122222 222321 1122232355667777888999999
Q ss_pred HHcCCCC
Q 008904 239 QRLGMMD 245 (549)
Q Consensus 239 ~~~g~~~ 245 (549)
.++|...
T Consensus 245 ~e~Gi~V 251 (371)
T 3qi7_A 245 LELKYIV 251 (371)
T ss_dssp HHHCCBB
T ss_pred HHcCCcc
Confidence 9998643
No 147
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.88 E-value=0.24 Score=44.53 Aligned_cols=121 Identities=11% Similarity=-0.001 Sum_probs=81.9
Q ss_pred HHHHHHhcCcEEEEcCCCchHH--------HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH
Q 008904 83 GALQFMETDTLAIVGPQSAVMA--------HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV 154 (549)
Q Consensus 83 ~~~~l~~~~v~aiiGp~~s~~~--------~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l 154 (549)
.+..|...++.+|+-+.++... .....+.+..++|+++. +.++++.+
T Consensus 58 aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~al 112 (240)
T 3ixl_A 58 HARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNGL 112 (240)
T ss_dssp HHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHHH
T ss_pred HHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHHH
Confidence 3444545589988876555443 33455666678888862 36788888
Q ss_pred HHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-----CCChhhHHHHHHH-H-hcCCCeEEEEEcc
Q 008904 155 SYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVK-V-RMMEARVIVVHGY 227 (549)
Q Consensus 155 ~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~-l-~~~~~~viil~~~ 227 (549)
++.|-++|+++.. |.....+.+.+.+++.|++|.......... ......+.+.+++ + ...+++.||+.|.
T Consensus 113 ~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT 189 (240)
T 3ixl_A 113 RALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSG 189 (240)
T ss_dssp HHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECT
T ss_pred HHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 8899999999974 666667788888999999887654433210 0124456677777 6 6678888888887
Q ss_pred hHHH
Q 008904 228 SRTG 231 (549)
Q Consensus 228 ~~~~ 231 (549)
.-..
T Consensus 190 ~l~~ 193 (240)
T 3ixl_A 190 GLLT 193 (240)
T ss_dssp TSCC
T ss_pred CCch
Confidence 5333
No 148
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=93.36 E-value=0.014 Score=51.89 Aligned_cols=52 Identities=8% Similarity=0.023 Sum_probs=43.4
Q ss_pred cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceEEeec
Q 008904 484 TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQLTR 546 (549)
Q Consensus 484 ~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ti~~~ 546 (549)
..+|+|..--|.+... |++ +++... -.|++.|..|.+|++|+||++++.|++
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~m------rg~~~RI~aL~~gk~D~aI~S~~aa~e 78 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHM------RGADIRVECLLNGVYDMAVVSRLAAES 78 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEEC------SCHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEc------cChHHHHHHHHcCCCCEEEEecccchh
Confidence 3479999887766663 777 888766 259999999999999999999999998
No 149
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=92.54 E-value=2.9 Score=38.29 Aligned_cols=117 Identities=17% Similarity=0.083 Sum_probs=71.5
Q ss_pred HHHHhcCcEEEEcCCCchHHH--------HHHHhhhhc-----CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHH
Q 008904 85 LQFMETDTLAIVGPQSAVMAH--------VLSHLANEL-----QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIA 151 (549)
Q Consensus 85 ~~l~~~~v~aiiGp~~s~~~~--------~va~~~~~~-----~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~ 151 (549)
..+...++++|+-+.++.... ....+.+.. ++|+++. ..+++
T Consensus 84 ~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A~~ 138 (273)
T 2xed_A 84 LEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGALV 138 (273)
T ss_dssp HHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHHHH
T ss_pred HHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHHHH
Confidence 334445888888765554221 124444455 7888763 24555
Q ss_pred HHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-----CCChhhHHHHHHHHhcCCCeEEEEE-
Q 008904 152 EMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMMEARVIVVH- 225 (549)
Q Consensus 152 ~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~viil~- 225 (549)
+.++..+-++|+++. .|.....+.+.+.+++.|+.+.......... ......+...++++...+++.||+.
T Consensus 139 ~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~ 215 (273)
T 2xed_A 139 EGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISC 215 (273)
T ss_dssp HHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEES
T ss_pred HHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcC
Confidence 566777889999996 4554455678888888999876544333210 0123345566666665677888887
Q ss_pred cchH
Q 008904 226 GYSR 229 (549)
Q Consensus 226 ~~~~ 229 (549)
|..-
T Consensus 216 CT~l 219 (273)
T 2xed_A 216 AVQM 219 (273)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 7653
No 150
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=88.96 E-value=8 Score=34.08 Aligned_cols=165 Identities=13% Similarity=0.104 Sum_probs=84.2
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC----ChH-------HHHHHHHHHHhcCcEE
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF----NGF-------LSIMGALQFMETDTLA 94 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~----~~~-------~a~~~~~~l~~~~v~a 94 (549)
..+||++.|.++..- .+ .++...++.+. +|+..+.+.-..... +.. ...+.+..+...++.+
T Consensus 6 ~~~ig~i~p~~~~~~--~e--~~~~~~~~~~~---~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~ 78 (228)
T 2eq5_A 6 KYTIGLIRVITLEDK--EI--LNLHGRIIESA---FPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVDA 78 (228)
T ss_dssp CEEEEEEESSCCCCH--HH--HTHHHHHHHHH---CTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred ceEEEEEeccCccCH--HH--HHHHHHHHHhh---CCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCCE
Confidence 578999999873211 11 11122222222 266666664332211 110 1112233444568999
Q ss_pred EEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccc
Q 008904 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRN 174 (549)
Q Consensus 95 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~ 174 (549)
|+-+.++. ..+..+-+..++|++... ++.++.....+ ++|+++......
T Consensus 79 iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rigVlat~~t~--- 127 (228)
T 2eq5_A 79 IIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVGVLNLTEET--- 127 (228)
T ss_dssp EEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEEEECSSSCC---
T ss_pred EEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEEEEecCccc---
Confidence 98776665 445556666788888631 11111122355 788888764332
Q ss_pred hHHHHHHHH-hhcCeEEEEEEccCCC-CCC---ChhhHHHHHHHHhcCCCeEEEEEcchHH
Q 008904 175 GVTALGDKL-AEIRCKISYKSALPPD-QSV---TETDVRNELVKVRMMEARVIVVHGYSRT 230 (549)
Q Consensus 175 ~~~~l~~~~-~~~g~~v~~~~~~~~~-~~~---~~~~~~~~l~~l~~~~~~viil~~~~~~ 230 (549)
. ..+.+.+ ++.|..+.... +... ... ....+...++++.+.+++.||+.|..-.
T Consensus 128 ~-~~~~~~~~~~~g~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 128 P-KVIRSILGNNLIAEDHPSG-VSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp C-HHHHHHHGGGEEEEECCTT-CCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred H-HHHHHHHHHHhCccccCCc-eeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 1 3466677 77776542110 1000 000 1233455666666668899999887644
No 151
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=87.26 E-value=13 Score=34.65 Aligned_cols=126 Identities=8% Similarity=-0.014 Sum_probs=76.9
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||.+-............+++.++++.|- ..++.+.+..+-.++..+.+.+.+++++++.+|+...... +..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~-a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGT-GNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGG-HHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCCC-chHH
Confidence 67777654333345668899999998763 3455554443334677888888999998999999755443 3333
Q ss_pred HHhhhh-----cCCcEEecccCCCCCC---CCCCCceEEccCCcHHHHHHHHHHHHHcCCc
Q 008904 108 SHLANE-----LQVPLLSFTALDPTLS---PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWG 160 (549)
Q Consensus 108 a~~~~~-----~~iP~Is~~~~~~~ls---~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~ 160 (549)
...+.. .++-+|.+........ +...|.+..+..+-...+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 333333 5677887754221110 0023556666666666777777777666664
No 152
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=86.70 E-value=2.9 Score=40.60 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCcEEEEEEecCCccc--chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~--~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
.+.++++.++.+++.+|++...... ...+.+.+.+++.|+++.....+.+. .+...+...++.+++.+++.||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3667788889999998886554443 36889999999889876443333333 4567788888889989999998765
Q ss_pred ch--HHHHHHHHHH
Q 008904 227 YS--RTGLMVFDVA 238 (549)
Q Consensus 227 ~~--~~~~~il~~a 238 (549)
.+ -++..++...
T Consensus 101 GGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 101 GGSPHDCGKGIGIA 114 (387)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 54 4566665544
No 153
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=85.94 E-value=8.6 Score=33.77 Aligned_cols=80 Identities=5% Similarity=-0.111 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-----CCChhhHHHHHHHHhcC--CC
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMM--EA 219 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~--~~ 219 (549)
..++++.++..|-++|+++. .|.....+.+.+.+++.|+.+.......... ......+...++++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 46677777778889999996 4554555677788888998876544333210 01223455555555555 77
Q ss_pred eEEEEEcchH
Q 008904 220 RVIVVHGYSR 229 (549)
Q Consensus 220 ~viil~~~~~ 229 (549)
+.||+.|..-
T Consensus 173 daIvLgCT~l 182 (223)
T 2dgd_A 173 DAVYIACTAL 182 (223)
T ss_dssp SEEEECCTTS
T ss_pred CEEEEeCCcc
Confidence 8888877653
No 154
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=85.51 E-value=0.76 Score=43.43 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec-ceEEee
Q 008904 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK-KVAQLT 545 (549)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~-~~ti~~ 545 (549)
-+|+++|++.+|++ ++++.. ..|++++..|.+|++|++++ +.+++.
T Consensus 34 ~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~~~~~~~~ 80 (321)
T 3p7i_A 34 TPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWYGNLSAME 80 (321)
T ss_dssp HHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEECCHHHHHH
T ss_pred HHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEEChHHHHH
Confidence 47899999999999 998754 27999999999999999975 355443
No 155
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=85.37 E-value=9.3 Score=36.43 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=64.8
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
=+||.+-....+.-.....++..+++++| |..++.+.+..+-.++..+.+.+..++++++.+|+...... .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 46787776543333455789999998876 45677777766657899999999999999999998765543 3
Q ss_pred HHHhhhhcCCcEEecccC
Q 008904 107 LSHLANELQVPLLSFTAL 124 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~ 124 (549)
+...+...++..|.+...
T Consensus 221 v~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCEEEEEcCc
Confidence 456666788888876443
No 156
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=84.95 E-value=0.7 Score=43.43 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .+.++... ..+ .+|+++|++.+|++ ++++.. ..|++++..|.+|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~----~~~----~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLK----SIW----EPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHH----HHH----HHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHH----HHH----HHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3678998754 23332111 112 58999999999999 888754 279999999999999999754
No 157
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=84.56 E-value=1.6 Score=42.25 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
..+.++++.+|.+++.+|++.........+.+.+.+++.|+.+.....+.+. .+...+.+.++.+++.+++.||-.+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 4466778889999999998764332235788999999999877543334444 45677888888888888999888766
Q ss_pred h--HHHHHHHHHHH
Q 008904 228 S--RTGLMVFDVAQ 239 (549)
Q Consensus 228 ~--~~~~~il~~a~ 239 (549)
+ -++.+++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 5 45566665544
No 158
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=81.54 E-value=22 Score=32.69 Aligned_cols=121 Identities=7% Similarity=-0.057 Sum_probs=74.5
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
=+||.+-..... . ...+++.++++.| +. +..+.+..+-.++..+.+.+.+++++++.+|+...+.. +..
T Consensus 127 ~~Ig~i~g~~~~--~-r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~~-a~G 195 (296)
T 2hqb_A 127 HKVGVIAAFPWQ--P-EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGY-HVP 195 (296)
T ss_dssp SEEEEEESCTTC--H-HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTTT-HHH
T ss_pred CeEEEEcCcCch--h-hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCCC-CHH
Confidence 367777655322 2 6788999998865 23 44444433334677788888899988999999755543 334
Q ss_pred HHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcE
Q 008904 107 LSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 161 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~ 161 (549)
+...+...++.+|.+.. + .+. ...|.+..+..+-...+...++.+..-.|+.
T Consensus 196 v~~a~~e~Gv~viG~D~-~--~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 196 VVEAIKDQGDFAIGYVG-D--QADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHHTCEEEEEES-C--CSSSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHcCCEEEEEec-c--hhhhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 44555667788887754 2 222 1234565555555555666666665556764
No 159
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=80.97 E-value=3.1 Score=40.35 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
.+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+.+. .+...+.+.++.+++.+++.||-.+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 356777778889998888554332236788888898888876543334444 456778888888888889999876554
Q ss_pred --HHHHHHHHHHH
Q 008904 229 --RTGLMVFDVAQ 239 (549)
Q Consensus 229 --~~~~~il~~a~ 239 (549)
-++..++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 45666665544
No 160
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=80.85 E-value=5.7 Score=38.74 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCcEEEEEEecCCccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.+.++++.++.+++.+|+++..... ...+.+.+.+++.|+.+.......+. .+...+...++.+++.++++||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567788889999999985343222 25788888888888876532222323 34677888888888899999987655
Q ss_pred h--HHHHHHHHH
Q 008904 228 S--RTGLMVFDV 237 (549)
Q Consensus 228 ~--~~~~~il~~ 237 (549)
+ -++.+++..
T Consensus 111 GsviD~AK~iA~ 122 (407)
T 1vlj_A 111 GSVVDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 4 455555544
No 161
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=78.68 E-value=16 Score=26.25 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=31.7
Q ss_pred cCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEE
Q 008904 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192 (549)
Q Consensus 140 ~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~ 192 (549)
.-.+...++-.+.+++.+|-+-..+||+.|. ..+++|....++.|..+..
T Consensus 57 vvddkewaekairfvkslgaqvliiiydqdq---nrleefsrevrrrgfevrt 106 (134)
T 2l69_A 57 VVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ---NRLEEFSREVRRRGFEVRT 106 (134)
T ss_dssp ECSSHHHHHHHHHHHHHHCCCCEEEEECSCH---HHHHHHHHHHHHTTCCEEE
T ss_pred EEccHHHHHHHHHHHHhcCCeEEEEEEeCch---hHHHHHHHHHHhcCceEEE
Confidence 3445566666677777777777777775443 4566676677777766543
No 162
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=78.59 E-value=18 Score=26.83 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=59.2
Q ss_pred EEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc
Q 008904 137 VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 216 (549)
Q Consensus 137 ~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~ 216 (549)
|-+..++.....-++.-+++.|- ++.++|+|.+- .....-.+.++++|..+...+ ...+|+.-+..+-.
T Consensus 5 fvvfssdpeilkeivreikrqgv-rvvllysdqde--krrrerleefekqgvdvrtve--------dkedfrenireiwe 73 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KRRRERLEEFEKQGVDVRTVE--------DKEDFRENIREIWE 73 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HHHHHHHHHHHTTTCEEEECC--------SHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HHHHHHHHHHHHcCCceeeec--------cHHHHHHHHHHHHH
Confidence 44445666666777777777765 56688977642 222333456778898876532 25667766666633
Q ss_pred --CCCeEEEEEc--chHHHHHHHHHHHHcCC
Q 008904 217 --MEARVIVVHG--YSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 217 --~~~~viil~~--~~~~~~~il~~a~~~g~ 243 (549)
-.-+++++.. +-+-+..++..|++.|.
T Consensus 74 rypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 74 RYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred hCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 2334554433 33557789999999884
No 163
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=76.78 E-value=4 Score=39.45 Aligned_cols=82 Identities=7% Similarity=0.124 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
-+.++++.+| +++.+|++...+. ...+.+.+.+++ |+.+.+. .++.. .....+...++.+++.++++||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~~-~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRFE-RFGGE--CCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEEE-ECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEEE-EcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 3567788888 9999888655443 356777788888 8887443 34444 456778888888888889998887765
Q ss_pred H--HHHHHHH
Q 008904 229 R--TGLMVFD 236 (549)
Q Consensus 229 ~--~~~~il~ 236 (549)
. ++.+++.
T Consensus 117 s~~D~AK~iA 126 (387)
T 3uhj_A 117 KTADTAKIVA 126 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3 4444443
No 164
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=75.42 E-value=10 Score=36.46 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
.-+.++++.++ +++.+|++...... ...+.+.+.+++.|+.+.....+.+. .+...+.+.++.+++.++++||-.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34566677778 99999986644332 25788888898888876543334443 4567788888889888899998766
Q ss_pred ch--HHHHHHHHHH
Q 008904 227 YS--RTGLMVFDVA 238 (549)
Q Consensus 227 ~~--~~~~~il~~a 238 (549)
.+ -++..++...
T Consensus 107 GGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 107 GGSPMDFAKAVAVL 120 (371)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 54 4555555443
No 165
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=75.30 E-value=21 Score=31.36 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=44.6
Q ss_pred HhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEe
Q 008904 88 METDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 167 (549)
Q Consensus 88 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~ 167 (549)
.+.++.+|+-+.++.... +..+-+..++|+|.. .++.++-+...+-++|+++..
T Consensus 70 ~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvlaT 123 (226)
T 2zsk_A 70 ERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLLGT 123 (226)
T ss_dssp HHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEESS
T ss_pred HHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEEeC
Confidence 344899999877776433 445555667887752 133344344456788988864
Q ss_pred cCCcccchHHHHHHHHhhcCeEEE
Q 008904 168 DDDQGRNGVTALGDKLAEIRCKIS 191 (549)
Q Consensus 168 ~~~~g~~~~~~l~~~~~~~g~~v~ 191 (549)
..... ...+++.+++.|+.+.
T Consensus 124 ~~T~~---~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 124 KTTMT---ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp TTTTS---CHHHHHHHHTTTCEEE
T ss_pred HHHHh---hhHHHHHHHHCCCEEE
Confidence 33221 2345666777777653
No 166
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=72.06 E-value=50 Score=28.83 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=26.4
Q ss_pred HHHHHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 82 ~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
+.+..+...++.+|+-+.++.. ..+..+-+..++|+|..
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM 103 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech
Confidence 3444444559999998777765 55566666778888863
No 167
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=68.08 E-value=14 Score=35.20 Aligned_cols=96 Identities=7% Similarity=0.037 Sum_probs=61.5
Q ss_pred HHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-
Q 008904 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 228 (549)
Q Consensus 150 i~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~- 228 (549)
+.++++.++.+++.+|++...+. ...+.+.+.+++.|+.+......+ . .+.+.+... +.+++.+.+.||-.+.+
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~--~~~~~v~~~-~~~~~~~~d~IIavGGGs 99 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-N--IDFDEIGTN-AFKIPAEVDALIGIGGGK 99 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CBHHHHHHH-HTTSCTTCCEEEEEESHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-C--CCHHHHHHH-HHhhhcCCCEEEEECChH
Confidence 56778888889999998665433 456788888888888765432233 2 245566666 77777888988876554
Q ss_pred -HHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 229 -RTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 229 -~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
-++..++... .+ ..++-|-|..
T Consensus 100 v~D~aK~vA~~--~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 100 AIDAVKYMAFL--RK---LPFISVPTST 122 (354)
T ss_dssp HHHHHHHHHHH--HT---CCEEEEESCC
T ss_pred HHHHHHHHHhh--cC---CCEEEecCcc
Confidence 4555555422 23 3455555543
No 168
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=67.25 E-value=29 Score=28.93 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=46.1
Q ss_pred cEEEEEEecCCccc---chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC-CCeEEEEEcc
Q 008904 160 GEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (549)
Q Consensus 160 ~~v~ii~~~~~~g~---~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 227 (549)
-+++||...|..|. .....+.+.+++.|..+.....++. +...+...+++..+. ++|+||..+.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D----d~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE----NRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS----CHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC----CHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 47888887776553 3456788888899998887766663 366777788777654 5788888754
No 169
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=66.55 E-value=38 Score=31.17 Aligned_cols=135 Identities=12% Similarity=0.127 Sum_probs=76.3
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc-CCCchHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG-PQSAVMA 104 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG-p~~s~~~ 104 (549)
-.|+.+|...+ .+-+.+|+.|+.++ +|..+.+...+++-.-.+.++-..+-++. ++++|+- .......
T Consensus 37 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~ 106 (304)
T 3r7f_A 37 KFAANLFFEPS---TRTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYY 106 (304)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCH
T ss_pred CEEEEEecCCC---hhHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHH
Confidence 45788887655 36788999998884 45555554333333333334444444444 4666653 2222333
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~ 178 (549)
..++...++|+|.-+.++ ... | .+++++++ .++| ..+|+++. |.........
T Consensus 107 ---~~la~~~~vPVINagdg~-----~~H-------P-----tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~S 164 (304)
T 3r7f_A 107 ---EELVSQVNIPILNAGDGC-----GQH-------P-----TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVARS 164 (304)
T ss_dssp ---HHHHHHCSSCEEESCCTT-----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHHH
T ss_pred ---HHHHHhCCCCEEeCCCCC-----CcC-------c-----HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHHH
Confidence 344556789999742211 111 2 36677764 4444 46777765 3222245677
Q ss_pred HHHHHhhcCeEEEEE
Q 008904 179 LGDKLAEIRCKISYK 193 (549)
Q Consensus 179 l~~~~~~~g~~v~~~ 193 (549)
+...+...|.++...
T Consensus 165 l~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 165 NAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 777888889877654
No 170
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=66.15 E-value=40 Score=30.39 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEe
Q 008904 85 LQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (549)
Q Consensus 85 ~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 120 (549)
..+.+.++.+|+-+.++..+..+..+-+..++|+|.
T Consensus 59 ~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 59 EHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 334445999999877776655677777888999997
No 171
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=66.08 E-value=14 Score=35.41 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=56.1
Q ss_pred HHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-
Q 008904 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 228 (549)
Q Consensus 150 i~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~- 228 (549)
+.++++.++ +++.+|++...+. ...+.+.+.+++.|+.+.. ..+... .....+...++.+++.+++.||-.+.+
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~~~~~~~d~IIavGGGs 97 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANIARKAEAAIVIGVGGGK 97 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 566777788 9999998654332 4578888888888888753 223332 334567778888888889999876654
Q ss_pred -HHHHHHHH
Q 008904 229 -RTGLMVFD 236 (549)
Q Consensus 229 -~~~~~il~ 236 (549)
-++..++.
T Consensus 98 v~D~aK~iA 106 (370)
T 1jq5_A 98 TLDTAKAVA 106 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45555554
No 172
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=64.89 E-value=45 Score=32.34 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=59.2
Q ss_pred cEEEEEEecCCcccc--hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch------HHH
Q 008904 160 GEVIAIFNDDDQGRN--GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RTG 231 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~--~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~------~~~ 231 (549)
++|.|+| .+.||.. .++.+.+.+.+.|+++......... .++...++..+. +++.|++.++. ..+
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~ 338 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPLM 338 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHH
Confidence 5899999 5567743 4688888888999887654433322 445666777775 45677776553 456
Q ss_pred HHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 232 LMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 232 ~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
..++.....+...++....+++..|..
T Consensus 339 ~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 339 RFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHhcccCCCEEEEEECCCCCc
Confidence 667777766665544445556656653
No 173
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.57 E-value=27 Score=32.07 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=55.3
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
++|+++..+ ++|.......+.+.+++.|+.+..... . .+.......++.+...+.+.||+.... ......++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 468888864 567778889999999999988776432 1 224445567778877888888887543 33456777
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 7776664
No 174
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=62.96 E-value=29 Score=31.51 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEe
Q 008904 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (549)
Q Consensus 86 ~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 120 (549)
.+.+.++.+|+-+.++..+..+..+-+..++|+|.
T Consensus 69 ~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 69 FLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 34445999999877776656667777788999987
No 175
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=62.37 E-value=16 Score=34.69 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.-+.++++.++.+++.+|++.... ...+.+.+.+++.++.+ +. .+.+. .....+.+.++.+++.+++.||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMH--TPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCC--CcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 346778889999999988865433 35677888888765433 22 22222 34566778888888889999888766
Q ss_pred hH--HHHHHH
Q 008904 228 SR--TGLMVF 235 (549)
Q Consensus 228 ~~--~~~~il 235 (549)
+. ++.+++
T Consensus 97 Gs~iD~aK~i 106 (353)
T 3hl0_A 97 GSTTGLGKAI 106 (353)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 53 444444
No 176
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=61.24 E-value=47 Score=29.51 Aligned_cols=93 Identities=9% Similarity=0.008 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCcEEEEEEec------------CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHh
Q 008904 148 SAIAEMVSYFGWGEVIAIFND------------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 215 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~------------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~ 215 (549)
...++.++..|.+.|=+.... ........+++++.+++.|+.+........ .....+...++..+
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFAK 101 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHHH
Confidence 557777888999988765422 112234578999999999998876543322 23456788888888
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 216 MMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 216 ~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
..+++.|+++...+....+...|.+.|+
T Consensus 102 ~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 102 AMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 8899988887666666777777777664
No 177
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=60.90 E-value=22 Score=32.48 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=53.4
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~ 236 (549)
++|++|..+ ++|.....+.+.+.+++.|..+.....-. .+.......++.+...+.+.||+... .......++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQ----YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSS----SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCc----CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 577777754 35666777888888999998887532111 22444556777777778888888654 334456777
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 178
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=59.11 E-value=36 Score=30.67 Aligned_cols=80 Identities=6% Similarity=-0.083 Sum_probs=54.7
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
++|+++..+ +.|.....+.+.+.+++.|+.+..... . .+.......++.+...+.+.||+.... ......++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-G----RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888864 345566778888899999988776532 1 223445567777777788888876543 45666788
Q ss_pred HHHHcCCC
Q 008904 237 VAQRLGMM 244 (549)
Q Consensus 237 ~a~~~g~~ 244 (549)
.+.+.|+.
T Consensus 81 ~~~~~~iP 88 (291)
T 3l49_A 81 KINDAGIP 88 (291)
T ss_dssp HHHHTTCC
T ss_pred HHHHCCCc
Confidence 88777753
No 179
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=58.74 E-value=15 Score=35.05 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.-+.++++.++.+++.+|++....+ ..+.+.+.+++.++.+ +. ...++ ...+...+.++.+++.++++||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-YA-GAVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-ec-CCcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 3467788899999999998655433 4677888887765432 22 22222 34566777888888888998888766
Q ss_pred h--HHHHHHHH
Q 008904 228 S--RTGLMVFD 236 (549)
Q Consensus 228 ~--~~~~~il~ 236 (549)
+ -++.+++.
T Consensus 99 GsviD~aK~iA 109 (358)
T 3jzd_A 99 GSTTGLGKAIA 109 (358)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 5 34455543
No 180
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=58.67 E-value=98 Score=27.94 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=26.8
Q ss_pred HHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEe
Q 008904 85 LQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (549)
Q Consensus 85 ~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 120 (549)
..+.+.++.+|+-+.++..+..+..+-+.+++|+|.
T Consensus 63 ~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 63 EFLKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 334455999999877776656677777788999886
No 181
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=58.43 E-value=32 Score=31.21 Aligned_cols=84 Identities=7% Similarity=-0.047 Sum_probs=54.6
Q ss_pred CCcEEEEEEec---CCcccchHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHH
Q 008904 158 GWGEVIAIFND---DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGL 232 (549)
Q Consensus 158 ~W~~v~ii~~~---~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~ 232 (549)
+=.+|+++..+ +.|.......+.+.+++. |..+......... .+.......++.+...+.+.||+.... ....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 34578877754 346667778888888887 7766554322211 234455677888888889988887554 3445
Q ss_pred HHHHHHHHcCC
Q 008904 233 MVFDVAQRLGM 243 (549)
Q Consensus 233 ~il~~a~~~g~ 243 (549)
..++.+.+.++
T Consensus 85 ~~~~~~~~~~i 95 (304)
T 3gbv_A 85 GFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 66777777664
No 182
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=58.31 E-value=86 Score=26.63 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=95.5
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
..+|..+.|.. .+...++-...+.+ ..+.+ .+ ++-..++..+.++ .+++.+||.-. ..+.
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i--~~--~~l~~~v~~a~~~-~~~~dVIISRG--gta~ 63 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN--------FIPIT--KT--ASLTRASKIAFGL-QDEVDAIISRG--ATSD 63 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEE--EE--CCHHHHHHHHHHH-TTTCSEEEEEH--HHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC--------CceEE--EE--CCHHHHHHHHHHh-cCCCeEEEECC--hHHH
Confidence 35788888874 23333333344432 24443 32 3456788888888 88999999532 2222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhh
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE 185 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~ 185 (549)
.+. +..++|+|... .+..+..+++...-++ + +++++|.-.... ..++.+.+.+
T Consensus 64 ~lr---~~~~iPVV~I~------------------~s~~Dil~al~~a~~~-~-~kIavvg~~~~~--~~~~~~~~ll-- 116 (196)
T 2q5c_A 64 YIK---KSVSIPSISIK------------------VTRFDTMRAVYNAKRF-G-NELALIAYKHSI--VDKHEIEAML-- 116 (196)
T ss_dssp HHH---TTCSSCEEEEC------------------CCHHHHHHHHHHHGGG-C-SEEEEEEESSCS--SCHHHHHHHH--
T ss_pred HHH---HhCCCCEEEEc------------------CCHhHHHHHHHHHHhh-C-CcEEEEeCcchh--hHHHHHHHHh--
Confidence 222 45689999752 2344455666665443 3 488888765532 2345555555
Q ss_pred cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
|.++..... .+..+....++++++.+.++||-... ..+.|+++|+.
T Consensus 117 -~~~i~~~~~------~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 -GVKIKEFLF------SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp -TCEEEEEEE------CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred -CCceEEEEe------CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 455544322 23668889999999999998776433 24567788864
No 183
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=56.96 E-value=71 Score=25.24 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=54.7
Q ss_pred EEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch----HHHHHHHH
Q 008904 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVFD 236 (549)
Q Consensus 161 ~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~il~ 236 (549)
+|.+.....+.......-+...++..|++|.+--... .....++.+++.++++|.+++.. ..+..+++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~--------p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS--------PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE--------CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC--------CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 5555555555556667778888899999988643211 12345666666789999997653 33556777
Q ss_pred HHHHcCCCCCCeEEEEeC
Q 008904 237 VAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 237 ~a~~~g~~~~~~~~i~~~ 254 (549)
+.++.+.. .-.+|++..
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 77777753 345666554
No 184
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=56.45 E-value=43 Score=31.17 Aligned_cols=85 Identities=6% Similarity=-0.090 Sum_probs=53.2
Q ss_pred HHHcCCcEEEEEEec----CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchH
Q 008904 154 VSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (549)
Q Consensus 154 l~~~~W~~v~ii~~~----~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 229 (549)
++.-.-+.|+++..+ ++|.......+.+.+++.|..+..... . .+...-...++.+...+.+.||+.....
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG-K----HSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC-T----TSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 344455789988865 345566778888889999998776432 1 1233445567778778889988865443
Q ss_pred HHHHHHHHHHHcCC
Q 008904 230 TGLMVFDVAQRLGM 243 (549)
Q Consensus 230 ~~~~il~~a~~~g~ 243 (549)
....+...+.+.++
T Consensus 131 ~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQ 144 (338)
T ss_dssp CHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHcCCC
Confidence 33445555655553
No 185
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=55.88 E-value=43 Score=29.97 Aligned_cols=78 Identities=9% Similarity=-0.028 Sum_probs=53.8
Q ss_pred CcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHH
Q 008904 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (549)
Q Consensus 159 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~ 236 (549)
-+.|+++..+ ++|.......+.+.+++.|..+..... . .+...-...++.+...+.+.||+..... ...++
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~ 79 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQ 79 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHH
Confidence 3578888864 346667778888889999988776432 1 1234445677888888899888876554 55667
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.++
T Consensus 80 ~l~~~~i 86 (276)
T 3jy6_A 80 EILHQQM 86 (276)
T ss_dssp HHHTTSS
T ss_pred HHHHCCC
Confidence 7766664
No 186
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=55.86 E-value=1.4e+02 Score=28.18 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=80.1
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
.-.|+.+|...+ .+-+.+|+.|+.++ +|..+.+...+++..-.+.++-..+.++.-+++|+-=.. ...
T Consensus 41 gK~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~--~~~ 108 (355)
T 4a8p_A 41 NKSLGMIFQQSS---TRTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE--RHH 108 (355)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECS--SHH
T ss_pred CCEEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecC--cHH
Confidence 346788887765 36788999999884 455554433333333344455555556655666553111 234
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHc--C--C--cEEEEEEecCCcccchH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYF--G--W--GEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~--~--W--~~v~ii~~~~~~g~~~~ 176 (549)
.+..++...++|+|.-++ +... | .+++++++ .++ | + .+|+++. |. ....
T Consensus 109 ~~~~lA~~~~vPVINag~------~~~H-------P-----tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~rva 166 (355)
T 4a8p_A 109 SIVDLANCATIPVINGMS------DYNH-------P-----TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQVC 166 (355)
T ss_dssp HHHHHHHHCSSCEEECCC------SSCC-------H-----HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CHHH
T ss_pred HHHHHHHhCCCCEEeCCC------CCCC-------c-----HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chhH
Confidence 445666777899998431 1111 2 36677764 556 5 3 4777664 32 4566
Q ss_pred HHHHHHHhhcCeEEEEE
Q 008904 177 TALGDKLAEIRCKISYK 193 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~ 193 (549)
..+...+...|.++...
T Consensus 167 ~Sl~~~~~~~G~~v~~~ 183 (355)
T 4a8p_A 167 FSLGLITTKMGMNFVHF 183 (355)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77778888889887664
No 187
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=55.75 E-value=1.3e+02 Score=28.05 Aligned_cols=133 Identities=15% Similarity=0.248 Sum_probs=75.2
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.-.|+.+|...+ .+-+.+|+.|+.++ +|..+.+...+++..-.+.++-..+.++.-+++|+- ... .
T Consensus 63 gk~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~---~ 129 (339)
T 4a8t_A 63 NKSLGMIFQQSS---TRTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER---H 129 (339)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSS---H
T ss_pred CceEEEEecCCC---chHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc---H
Confidence 346788887655 36788999999884 455554433333322222333333333332444442 222 3
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHc--C--C--cEEEEEEecCCcccch
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYF--G--W--GEVIAIFNDDDQGRNG 175 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~--~--W--~~v~ii~~~~~~g~~~ 175 (549)
..+..++...++|+|.-+. +... | .+++++++ .++ | + .+|+++. |. ...
T Consensus 130 ~~~~~lA~~~~vPVINag~------~~~H-------P-----tQaLaDl~Ti~e~~~~G~~l~glkva~vG--D~--~rv 187 (339)
T 4a8t_A 130 HSIVDLANCATIPVINGMS------DYNH-------P-----TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQV 187 (339)
T ss_dssp HHHHHHHHHCSSCEEECCC------SSCC-------H-----HHHHHHHHHHHHTCCTTCCGGGCEEEEES--SC--CHH
T ss_pred HHHHHHHHhCCCCEEECCC------CCcC-------c-----HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chh
Confidence 3445666777899998431 1111 2 36677764 556 5 2 5777664 32 456
Q ss_pred HHHHHHHHhhcCeEEEEE
Q 008904 176 VTALGDKLAEIRCKISYK 193 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~ 193 (549)
...+...+...|.++...
T Consensus 188 a~Sl~~~~~~~G~~v~~~ 205 (339)
T 4a8t_A 188 CFSLGLITTKMGMNFVHF 205 (339)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 777778888889887664
No 188
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=55.65 E-value=32 Score=28.42 Aligned_cols=80 Identities=11% Similarity=-0.025 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEE
Q 008904 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (549)
Q Consensus 146 ~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 225 (549)
.++....+.++++-+++.++ +|........+.+...+...|+.+... + .++....+++-+..+.++++++
T Consensus 14 HGQV~t~W~k~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~---s------ve~ai~~~~~~~~~~~~v~ll~ 83 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIIC-NDDVFNDEVRRTLLRQAAPPGMKVNVV---S------LEKAVAVYHNPQYQDETVFYLF 83 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEEE---C------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chhheeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEEE---E------HHHHHHHHhcccCCCceEEEEE
Confidence 47888999999999999655 454444456666666666678776652 2 3344444544444677899999
Q ss_pred cchHHHHHHH
Q 008904 226 GYSRTGLMVF 235 (549)
Q Consensus 226 ~~~~~~~~il 235 (549)
-++.++..++
T Consensus 84 k~p~d~~~lv 93 (164)
T 1nrz_A 84 TNPHDVLTMV 93 (164)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998887664
No 189
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=54.21 E-value=69 Score=28.90 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEe
Q 008904 85 LQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (549)
Q Consensus 85 ~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 120 (549)
..|.+.++.+|+-+.++..+.++..+-+.+.+|+|.
T Consensus 61 ~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 61 NFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 344456999999877777666677777888999996
No 190
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=54.08 E-value=1.2e+02 Score=27.10 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=69.0
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCCch
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~ 102 (549)
+.=+||.+.............+++-|+++.+ + .... .+.....+...+.+.+.+++.. .+.||+...+.
T Consensus 125 G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g----~--~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~- 195 (289)
T 3k9c_A 125 GHRNIAHIDGADAPGGADRRAGFLAAMDRHG----L--SASA--TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDR- 195 (289)
T ss_dssp TCCSEEEECCTTSTTHHHHHHHHHHHHHHTT----C--GGGE--EEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHH-
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHHHHHCC----C--CCCc--cEEECCCCHHHHHHHHHHHHcCCCCCCEEEECChH-
Confidence 3336777765543334455778887777632 1 1112 2333445677777788888874 78999985443
Q ss_pred HHHHHHHhhhhcC------CcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH
Q 008904 103 MAHVLSHLANELQ------VPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (549)
Q Consensus 103 ~~~~va~~~~~~~------iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~ 156 (549)
.+..+...+...+ +.++++... .+.....|-+..+..+...+++..++++..
T Consensus 196 ~A~g~~~al~~~g~~vP~di~vig~D~~--~~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 253 (289)
T 3k9c_A 196 CATGVLDLLVRSGRDVPADISVVGYDDS--RLARIPHVQMTTISQDATHMAEAAVDGALA 253 (289)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEEECC--TTTTCTTTCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCH--HHHhcCCCCcceEecCHHHHHHHHHHHHHH
Confidence 3333444444443 336666433 233323355666667777788777777643
No 191
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=54.02 E-value=95 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=26.4
Q ss_pred HHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 86 ~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
.+.+.++.+|+-+.++..+..+..+-+..++|+|..
T Consensus 79 ~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 79 KLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 334459999998777766556677777789999973
No 192
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=53.64 E-value=37 Score=31.77 Aligned_cols=80 Identities=5% Similarity=-0.007 Sum_probs=53.0
Q ss_pred CcEEEEEEecC---CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHH
Q 008904 159 WGEVIAIFNDD---DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLM 233 (549)
Q Consensus 159 W~~v~ii~~~~---~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~ 233 (549)
-.+|++|..+. +|.....+.+.+.+++.|+.+..... . .+.......++++.. .+.+.||+.........
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-E----RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-C----CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 35788888642 56667778888888889988776422 1 123333455666665 48888888764455666
Q ss_pred HHHHHHHcCC
Q 008904 234 VFDVAQRLGM 243 (549)
Q Consensus 234 il~~a~~~g~ 243 (549)
+++.+.+.|+
T Consensus 78 ~~~~~~~~gi 87 (350)
T 3h75_A 78 ILRLSQGSGI 87 (350)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHhCCC
Confidence 7777776664
No 193
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=53.44 E-value=1.4e+02 Score=27.65 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=74.4
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
-.|+.+|...+ .+-+.+|+.|+.++ +|..+.+...+++-.-.+.++-..+-++.-+++|+-=.. ....
T Consensus 49 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~--~~~~ 116 (323)
T 3gd5_A 49 KVLGLVFLKAS---TRTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTF--AQTE 116 (323)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECS--SHHH
T ss_pred CEEEEEecCCC---cchHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecC--ChhH
Confidence 36788887665 46788999999884 444554433333323333444445555555666653111 1234
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
+..++....+|+|.-+. + ... | .+++++++ .++| ..+|+++. |. ......+.
T Consensus 117 ~~~lA~~~~vPVINag~-~-----~~H-------P-----tQaLaDl~Ti~e~~g~l~glkva~vG--D~--~rva~Sl~ 174 (323)
T 3gd5_A 117 LEEYAHYAGIPVINALT-D-----HEH-------P-----CQVVADLLTIRENFGRLAGLKLAYVG--DG--NNVAHSLL 174 (323)
T ss_dssp HHHHHHHHCSCEEEEEC-S-----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CCC-------c-----HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--CcHHHHHH
Confidence 45666677899998532 1 111 2 36677764 3443 56887775 32 35566777
Q ss_pred HHHhhcCeEEEEE
Q 008904 181 DKLAEIRCKISYK 193 (549)
Q Consensus 181 ~~~~~~g~~v~~~ 193 (549)
..+...|.++...
T Consensus 175 ~~~~~~G~~v~~~ 187 (323)
T 3gd5_A 175 LGCAKVGMSIAVA 187 (323)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 7788889887664
No 194
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=53.32 E-value=91 Score=25.43 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=57.9
Q ss_pred cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch----HHHHHHH
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 235 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~il 235 (549)
.+|.+.....+.......-+...++..|++|..--. . .....+++.+++.++++|.+.+.. ..+..++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~---~-----~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL---R-----QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS---B-----CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC---C-----CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 466666555566666778888889999999875321 1 123456777777899999997753 5567778
Q ss_pred HHHHHcCCCCCCeEEEEeC
Q 008904 236 DVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 236 ~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+++.|.. .-.+|++..
T Consensus 91 ~~L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHHHTTCT-TSCEEEEEC
T ss_pred HHHHhcCCC-CCEEEEeCC
Confidence 888887652 244666653
No 195
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=52.75 E-value=59 Score=29.29 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=54.6
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchH----HHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR----TGLM 233 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~----~~~~ 233 (549)
+.|+++..+ ++|.....+.+.+.+++.|..+.....- .+...-...++.+...+.+.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 789999864 4566777888999999999987764321 1234456677788788899888865432 3445
Q ss_pred HHHHHHHcCC
Q 008904 234 VFDVAQRLGM 243 (549)
Q Consensus 234 il~~a~~~g~ 243 (549)
.++.+.+.++
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 6677777664
No 196
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=52.62 E-value=33 Score=28.37 Aligned_cols=80 Identities=8% Similarity=-0.011 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEE
Q 008904 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (549)
Q Consensus 146 ~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 225 (549)
.++....+.++++-+++.++ +|........+.+...+...|+.+... + .++....+++-+..+.++++++
T Consensus 17 HGQV~t~W~~~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~---s------ve~ai~~~~~~~~~~~~v~ll~ 86 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVV-SDEVAADTVRKTLLTQVAPPGVTAHVV---D------VAKMIRVYNNPKYAGERVMLLF 86 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEEE---C------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chheeeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEEE---E------HHHHHHHHhccccCCcEEEEEE
Confidence 46788899999999999655 454444456666666666678776652 2 3344444544444677899999
Q ss_pred cchHHHHHHH
Q 008904 226 GYSRTGLMVF 235 (549)
Q Consensus 226 ~~~~~~~~il 235 (549)
-++.++..++
T Consensus 87 k~p~d~~~lv 96 (165)
T 1vsq_C 87 TNPTDVERLV 96 (165)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998887665
No 197
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=51.88 E-value=55 Score=30.59 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=47.0
Q ss_pred eEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHh
Q 008904 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 215 (549)
Q Consensus 136 ~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~ 215 (549)
++.+.++.......|.. -+++.+|+....-.....+.+.+.+++.|+.+.....-.. .+.....++..
T Consensus 12 ~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~------~~~~~~~~~~~ 79 (332)
T 2bon_A 12 LYKKAGSETLYIQGMAE------FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEK------GDAARYVEEAR 79 (332)
T ss_dssp ------------------------CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCST------THHHHHHHHHH
T ss_pred eeeeccCcchhhhhhhh------cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCc------chHHHHHHHHH
Confidence 44555544444444432 2678888854332224567788888888887765433221 13334444444
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHHHc
Q 008904 216 MMEARVIVVHGYSRTGLMVFDVAQRL 241 (549)
Q Consensus 216 ~~~~~viil~~~~~~~~~il~~a~~~ 241 (549)
..+.+.||+.+....+..+++.+.+.
T Consensus 80 ~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 80 KFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEEccchHHHHHHHHHhhc
Confidence 44577888877777778788777643
No 198
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=51.63 E-value=68 Score=26.81 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=45.6
Q ss_pred cCCcEEEEEEecCC----------cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC-CCeEEEEE
Q 008904 157 FGWGEVIAIFNDDD----------QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVH 225 (549)
Q Consensus 157 ~~W~~v~ii~~~~~----------~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~ 225 (549)
+.--+|++|...|. .-......+...+++.|..+.....++. +...+...+++..+. ++|+||..
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~D----d~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD----DKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS----CHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCC----CHHHHHHHHHHHHhcCCCCEEEEC
Confidence 33457888876642 2234566788888899998887766663 366777777776544 58888887
Q ss_pred cc
Q 008904 226 GY 227 (549)
Q Consensus 226 ~~ 227 (549)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 199
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=50.90 E-value=78 Score=26.09 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=46.5
Q ss_pred CCcEEEEEEecCCcc---cchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcc
Q 008904 158 GWGEVIAIFNDDDQG---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (549)
Q Consensus 158 ~W~~v~ii~~~~~~g---~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 227 (549)
.--+++||...|.-| ......+...+++.|..+.....++. +...+...+++..+ .++|+||..+.
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D----d~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD----DKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS----SHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC----CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 335788888766543 23456788888889998887766663 36677777877665 36888888754
No 200
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=50.59 E-value=62 Score=28.66 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 008904 147 MSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 224 (549)
....++.++..|.+.|=+.... ........+.+++.+++.|+.+........ .....+...++..+..+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 3567778889999988766431 122334568899999999998765432211 23556777777777778888887
Q ss_pred EcchHHHHHHHHHHHHcCC
Q 008904 225 HGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 225 ~~~~~~~~~il~~a~~~g~ 243 (549)
....+....+...|.+.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 7666677777777777664
No 201
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=49.68 E-value=2e+02 Score=28.35 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHhcCcEEEEcC--CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHH
Q 008904 76 NGFLSIMGALQFMETDTLAIVGP--QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM 153 (549)
Q Consensus 76 ~~~~a~~~~~~l~~~~v~aiiGp--~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~ 153 (549)
-+..+...+.+..+.++-+||=. ..-.....+..++..+++.+|.+.+ ..... +. +...+...
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~---~~-~~~~f~~~--------- 109 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMI---AG-TPLAFANV--------- 109 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEE---TT-EEEESCCC---------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--ccccc---CC-ccccccCC---------
Confidence 34555666667777766655421 1123344567788889999998765 21111 11 11111110
Q ss_pred HHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCC---CChhhHHHHHHHHhc-CCCeEEEEEcch-
Q 008904 154 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS---VTETDVRNELVKVRM-MEARVIVVHGYS- 228 (549)
Q Consensus 154 l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~---~~~~~~~~~l~~l~~-~~~~viil~~~~- 228 (549)
+.--+|++|..... ....+...+.+.|+-+.....+..... -...++.+.|+.+.+ ..+++|+++...
T Consensus 110 ---~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 110 ---MPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp ---CCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred ---CCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 12347999986654 456677777788877766554442200 034568888888865 577899998853
Q ss_pred --HHHHHHHHHHHHcC
Q 008904 229 --RTGLMVFDVAQRLG 242 (549)
Q Consensus 229 --~~~~~il~~a~~~g 242 (549)
...+.|++.+++.+
T Consensus 183 ~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 183 AEAVRLKIVNAMKATG 198 (480)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 23478888887643
No 202
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=49.58 E-value=61 Score=29.36 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=52.8
Q ss_pred EEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHH
Q 008904 161 EVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDV 237 (549)
Q Consensus 161 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~ 237 (549)
+|+++..+ ++|.....+.+.+.+++.|..+..... . +.......++.+...+.+.||+... .......++.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-----~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 77 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-P-----DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 77 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC-C-----SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-C-----CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHH
Confidence 67777754 356667778888889999988765432 1 2444556777777788898888654 3445566777
Q ss_pred HHHcCC
Q 008904 238 AQRLGM 243 (549)
Q Consensus 238 a~~~g~ 243 (549)
+.+.|+
T Consensus 78 ~~~~~i 83 (306)
T 8abp_A 78 ARGYDM 83 (306)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 877664
No 203
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=49.50 E-value=87 Score=27.86 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=62.7
Q ss_pred HHHHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEE
Q 008904 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEV 162 (549)
Q Consensus 83 ~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v 162 (549)
.+..+.+.++.+|+-+.++..+..+..+-+..++|+|... . .++...+...+-++|
T Consensus 54 ~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~--e----------------------~~~~~A~~~~~~~ri 109 (254)
T 1b73_A 54 CAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI--E----------------------PGVKEALKKSRNKKI 109 (254)
T ss_dssp HHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH--H----------------------HHHHHHHHHCSSCEE
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee--H----------------------HHHHHHHHccCCCEE
Confidence 3334445599999987666654446666677789988731 0 111122333467899
Q ss_pred EEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC---CC---C----hhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 163 IAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ---SV---T----ETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 163 ~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~---~~---~----~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
+++...... .....++.++..|..+.... .+... .. . ...+...++.+.+. ++.||+.|..
T Consensus 110 gVlaT~~T~---~~~~y~~~l~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 110 GVIGTPATV---KSGAYQRKLEEGGADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp EEEECHHHH---HHCHHHHHHHTTSCEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred EEEEChHHh---hhHHHHHHHHcCCCEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 999855431 11234455556777764221 11100 00 1 11233334444445 8999998775
No 204
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=48.94 E-value=54 Score=27.66 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=44.4
Q ss_pred cEEEEEEecCCc----ccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 160 GEVIAIFNDDDQ----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 160 ~~v~ii~~~~~~----g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
-+++||...|.- -......+...+++.|..+.....++. +...+...+++....++|+||..+.
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D----d~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA----DEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS----CHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC----CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 467777764421 234567788888999999887776763 3667777777765456888888754
No 205
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=48.91 E-value=15 Score=32.43 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEE
Q 008904 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI 165 (549)
Q Consensus 86 ~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii 165 (549)
.|.+.++.+|+-+.++... ....+-...++|+|.. .++.++-+...+-++|+++
T Consensus 71 ~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rVgvL 124 (231)
T 3ojc_A 71 SLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKIGLL 124 (231)
T ss_dssp HHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEEEEE
Confidence 3444599999987776443 2345555667887753 2333333344566788888
Q ss_pred EecCCcccchHHHHHHHHhhc-CeEEE
Q 008904 166 FNDDDQGRNGVTALGDKLAEI-RCKIS 191 (549)
Q Consensus 166 ~~~~~~g~~~~~~l~~~~~~~-g~~v~ 191 (549)
......- ...+++.+++. |+.+.
T Consensus 125 aT~~T~~---s~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 125 GTRYTME---QGFYRGRLTEKHGIEVI 148 (231)
T ss_dssp SCHHHHH---STTTHHHHHHTTCCEEE
T ss_pred cCHHHhh---chHHHHHHHhcCCCEEE
Confidence 7543211 11223444454 76653
No 206
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=48.62 E-value=28 Score=31.01 Aligned_cols=79 Identities=11% Similarity=-0.004 Sum_probs=51.0
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~ 237 (549)
+.|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+..........++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D----DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 467788764 346666778888888889988776432 1 123445567777777888888886543222445566
Q ss_pred HHHcCC
Q 008904 238 AQRLGM 243 (549)
Q Consensus 238 a~~~g~ 243 (549)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 666664
No 207
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=48.36 E-value=63 Score=26.51 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=43.5
Q ss_pred EEEEEEecCC-----cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC-CCeEEEEEcc
Q 008904 161 EVIAIFNDDD-----QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (549)
Q Consensus 161 ~v~ii~~~~~-----~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 227 (549)
+++||...|. .-......+...+++.|..+.....++. +...+...+++..+. ..|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~D----d~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPD----EPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECS----CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCC----CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5666665442 1223557788889999998887766763 366778888877654 6889988754
No 208
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=47.65 E-value=1e+02 Score=27.35 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=55.8
Q ss_pred HHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-
Q 008904 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 228 (549)
Q Consensus 150 i~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~- 228 (549)
++.-.... -.-+.++++. .|.....+.+...-+..++.|.....+- +.+ ++.+.+..++++|.+.+..
T Consensus 66 iA~~y~~~-A~~IsVlTd~-~~F~gs~~dL~~ir~~v~lPvLrKDfi~-------~~~--qi~ea~~~GAD~ilLi~a~l 134 (251)
T 1i4n_A 66 FIRMYDEL-ADAISILTEK-HYFKGDPAFVRAARNLTCRPILAKDFYI-------DTV--QVKLASSVGADAILIIARIL 134 (251)
T ss_dssp HHHHHHHH-CSEEEEECCC-SSSCCCTHHHHHHHTTCCSCEEEECCCC-------STH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHh-CCceEEEecc-cccCCCHHHHHHHHHhCCCCEEEeeCCC-------CHH--HHHHHHHcCCCEEEEecccC
Confidence 44444444 6677777744 4555566777665555677776544332 123 3556888999999998764
Q ss_pred --HHHHHHHHHHHHcCCC
Q 008904 229 --RTGLMVFDVAQRLGMM 244 (549)
Q Consensus 229 --~~~~~il~~a~~~g~~ 244 (549)
.++..+++.++++||.
T Consensus 135 ~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 135 TAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp CHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 5788899999998874
No 209
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=47.59 E-value=1.6e+02 Score=26.55 Aligned_cols=87 Identities=17% Similarity=0.048 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
..++.-....|-..+.++.+...+ ....+.+...-+..++.|.....+- + .+ ++.+.+..+++.|++.+.
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f-~Gs~~~L~~ir~~v~lPVl~Kdfi~-d------~~--qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSF-QGAPEFLTAARQACSLPALRKDFLF-D------PY--QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTT-CCCHHHHHHHHHTSSSCEEEESCCC-S------TH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEecccccc-CCCHHHHHHHHHhcCCCEEECCccC-C------HH--HHHHHHHcCCCEEEEccc
Confidence 456666777899999988855544 3456666665555677776443222 1 11 466778899999998753
Q ss_pred ---hHHHHHHHHHHHHcCCC
Q 008904 228 ---SRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 228 ---~~~~~~il~~a~~~g~~ 244 (549)
..++..++..++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 46788899999998874
No 210
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=47.49 E-value=7 Score=36.07 Aligned_cols=47 Identities=4% Similarity=-0.087 Sum_probs=39.0
Q ss_pred eeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 486 IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 486 ~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.+.||-+.+.+-+.+..|++ ++++.. +.+..++..|.+|++|+++++
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~ 62 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSY 62 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEEC
T ss_pred ccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecC
Confidence 46788888888888999999 888866 134499999999999999876
No 211
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.96 E-value=56 Score=29.42 Aligned_cols=80 Identities=8% Similarity=0.070 Sum_probs=53.2
Q ss_pred CcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHH
Q 008904 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVF 235 (549)
Q Consensus 159 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il 235 (549)
=++|+++..+ ++|.....+.+.+.+++.|+.+..... . .+.......++.+...+.+.||+... .......+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~ 82 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS-Q----NSRISEREQILEFVHLKVDAIFITTLDDVYIGSAI 82 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-S----SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHH
Confidence 3578888864 345666778888888899988776432 1 22444556777777788888888654 34444667
Q ss_pred HHHHHcCC
Q 008904 236 DVAQRLGM 243 (549)
Q Consensus 236 ~~a~~~g~ 243 (549)
+.+.+.++
T Consensus 83 ~~~~~~~i 90 (293)
T 3l6u_A 83 EEAKKAGI 90 (293)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 77777664
No 212
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=46.80 E-value=1.3e+02 Score=27.72 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=73.7
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEE-ecCCCChHHHHHHHHHHHhcCcEEEE--cCCCch
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITM-HDAKFNGFLSIMGALQFMETDTLAIV--GPQSAV 102 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~-~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~ 102 (549)
.-.|+.+|...+ .+-+.+|+.|+.++ +|..+.+.. .+++-.-.+.++-..+-++.-+++|+ .+. ..
T Consensus 40 gk~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~~ 108 (306)
T 4ekn_B 40 GKILATVFYEPS---TRTRLSFETAMKRL-------GGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPS-EG 108 (306)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCCTTTTSSSSCCHHHHHHHHHHHCSEEEEECSS-TT
T ss_pred CceEEEEEcCCC---hhHHhhHHHHHHHc-------CCEEEEcCCcccccCCCCCCHHHHHHHHHHhCcEEEEEcCC-hH
Confidence 346888887765 57788999999884 455554433 23332222223333333333234443 332 22
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~ 176 (549)
.+..++....+|+|.-+.++ ... | .+++++++ .++| ..+|++|. |-.++ ...
T Consensus 109 ---~~~~lA~~~~vPVINag~g~-----~~H-------P-----tQ~LaDl~Ti~e~~g~l~glkva~vG-D~~~~-rva 166 (306)
T 4ekn_B 109 ---AARLASEYSQVPIINAGDGS-----NQH-------P-----TQTLLDLYTIMREIGRIDGIKIAFVG-DLKYG-RTV 166 (306)
T ss_dssp ---HHHHHHHHCSSCEEESCSSS-----SCC-------H-----HHHHHHHHHHHHHHSCSTTCEEEEES-CTTTC-HHH
T ss_pred ---HHHHHHHhCCCCEEeCCCCC-----CcC-------c-----HHHHHHHHHHHHHhCCcCCCEEEEEc-CCCCC-cHH
Confidence 23455566789999843221 111 2 36677764 4443 46777765 22233 356
Q ss_pred HHHHHHHhhc-CeEEEEE
Q 008904 177 TALGDKLAEI-RCKISYK 193 (549)
Q Consensus 177 ~~l~~~~~~~-g~~v~~~ 193 (549)
..+...+... |.++...
T Consensus 167 ~Sl~~~~~~~~G~~v~~~ 184 (306)
T 4ekn_B 167 HSLVYALSLFENVEMYFV 184 (306)
T ss_dssp HHHHHHHHTSSSCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 7777778888 8877654
No 213
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=46.48 E-value=1.1e+02 Score=27.67 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=26.4
Q ss_pred HHh-cCcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 87 FME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 87 l~~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
++. .++.+|+-+.++..+..+..+-+..++|+|..
T Consensus 79 ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 79 VQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 444 58999998777666556777778889999973
No 214
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=46.29 E-value=65 Score=29.63 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=53.5
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
++|+++..+ ++|.......+.+.+++.|..+..... . .+...-...++.+...+.+.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA-D----DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC-C----CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888864 456667788888899999988776442 1 123344566777766778888886543 34566777
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 215
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=46.20 E-value=1.3e+02 Score=27.74 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=75.7
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
-.|+.+|...+ .+-+.+|+.|+.++ +|..+.+...+++..-.+.++-..+-++.-+++|+- ... ..
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~---~~ 112 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFE---QD 112 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSC---HH
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC---HH
Confidence 35888887765 47788999999984 445444433232222222233333333332445542 222 23
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~l 179 (549)
.+..++...++|+|.-+ ++ ... | .+++++++ .++| ..+|+++.+ +......+
T Consensus 113 ~~~~lA~~~~vPVINag-~~-----~~H-------P-----tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va~Sl 170 (309)
T 4f2g_A 113 IIQRFAENSRVPVINGL-TN-----EYH-------P-----CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNMLYTW 170 (309)
T ss_dssp HHHHHHHTCSSCEEEEE-CS-----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHHHHH
T ss_pred HHHHHHHhCCCCEEECC-CC-----ccC-------c-----HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchHHHH
Confidence 44566677789999854 22 111 2 36666664 3443 568877753 23567788
Q ss_pred HHHHhhcCeEEEEE
Q 008904 180 GDKLAEIRCKISYK 193 (549)
Q Consensus 180 ~~~~~~~g~~v~~~ 193 (549)
...+...|.++...
T Consensus 171 ~~~~~~~G~~v~~~ 184 (309)
T 4f2g_A 171 IQAARILDFKLQLS 184 (309)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 88888889877654
No 216
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=45.26 E-value=13 Score=32.08 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=26.6
Q ss_pred cEEEEcCCCchHHHHHHHhhhhcCCcEEecc
Q 008904 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFT 122 (549)
Q Consensus 92 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~ 122 (549)
+..++||..|+=.-....+++.+++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999887778889999999999853
No 217
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=45.25 E-value=1.3e+02 Score=25.66 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=56.4
Q ss_pred cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch----HHHHHHH
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 235 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~il 235 (549)
.+|.+.....+...-+..-+...++..|+.|..-. .. ......++.+++.++++|.+.+.. ..+..++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~-----vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VD-----IEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SS-----BCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CC-----CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 46766666666666778888888999999987532 11 123345566666689999987642 4567778
Q ss_pred HHHHHcCCCCCCeEEEEe
Q 008904 236 DVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 236 ~~a~~~g~~~~~~~~i~~ 253 (549)
+..++.+....-.++++.
T Consensus 161 ~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHTTCGGGCEEEEES
T ss_pred HHHHhcCCCCCCeEEEEC
Confidence 888877653223455554
No 218
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=44.88 E-value=41 Score=29.92 Aligned_cols=80 Identities=6% Similarity=-0.046 Sum_probs=51.2
Q ss_pred EEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-CeEEEEEcc-hHHHHHHHH
Q 008904 161 EVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGY-SRTGLMVFD 236 (549)
Q Consensus 161 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~-~~~~~~il~ 236 (549)
+|+++..+ ++|.....+.+.+.+++.|..+.....-. . .+.......++.+...+ .+.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-D--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-T--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-C--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 56777653 45666777888888999998877542111 1 12333455677776667 888888653 344556677
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.++
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 219
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=44.67 E-value=35 Score=33.62 Aligned_cols=96 Identities=8% Similarity=0.025 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
.+.++++.+|.+++.+|++..... ...+.+.+.+++.|+.+... .+... .....+....+.+++ +.++||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 356677778866999998654332 35788888888888877432 23322 234566666666777 88988876654
Q ss_pred --HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 229 --RTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 229 --~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
-++..++.. ..+ ..++-|-|.
T Consensus 156 SviD~AK~iA~--~~g---iP~I~IPTT 178 (450)
T 1ta9_A 156 KTMDSAKYIAH--SMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHH--HTT---CCEEEEESS
T ss_pred HHHHHHHHHHH--hcC---CCEEEEeCC
Confidence 455555542 223 345555554
No 220
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=44.64 E-value=52 Score=29.62 Aligned_cols=80 Identities=4% Similarity=-0.095 Sum_probs=51.2
Q ss_pred CCcEEEEEEec-------CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHH
Q 008904 158 GWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 230 (549)
Q Consensus 158 ~W~~v~ii~~~-------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 230 (549)
+=+.|+++..+ ++|.....+.+.+.+++.|..+... ... .........++.+...+.+.||+......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGE--TEEEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 34578888765 3466677788888899999877652 211 12333456677777788898888644322
Q ss_pred HHHHHHHHHHcCC
Q 008904 231 GLMVFDVAQRLGM 243 (549)
Q Consensus 231 ~~~il~~a~~~g~ 243 (549)
...++.+.+.++
T Consensus 82 -~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 -DRIIQYLHEQNF 93 (292)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -hHHHHHHHHCCC
Confidence 245666666664
No 221
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=44.09 E-value=32 Score=33.32 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=51.3
Q ss_pred HHHHHHHcCCcEEEEEEecCCccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 150 IAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 150 i~~~l~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
+.++++ ++ +++.+|+++..... ...+.+.+.++ |+++.......+. .+...+...++.+++.+++.||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455566 67 89988885442222 14567777775 7665432223323 346677788888888889999876654
Q ss_pred --HHHHHHHHHH
Q 008904 229 --RTGLMVFDVA 238 (549)
Q Consensus 229 --~~~~~il~~a 238 (549)
-++.+++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 4555555443
No 222
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.95 E-value=1.5e+02 Score=25.55 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=57.4
Q ss_pred cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEE--Ecch----HHHHH
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV--HGYS----RTGLM 233 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil--~~~~----~~~~~ 233 (549)
.+|.+-....+...-+..-+...++..|++|..- ..+ .....+++.+++.++++|.+ .+.. ..+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~L---G~~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDL---GVD-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEEC---CSS-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEc---CCC-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 3665555566666677788888899999998752 221 12345677778888999999 5543 34667
Q ss_pred HHHHHHHcCCCCCCeEEEEeC
Q 008904 234 VFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 234 il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++..++.|+...-.+|++..
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESS
T ss_pred HHHHHHHcCCCCCCEEEEECC
Confidence 788888877532334666554
No 223
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=43.91 E-value=73 Score=28.77 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=49.8
Q ss_pred cEEEEEEe--cCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~--~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
.+|+++.. +++|.....+.+.+.+++.|+.+.... +.. .+.......++.+...+.+.||+.... ......++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46777764 345666677888888888998775421 111 223344556777777788888876543 33445667
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.++
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7766553
No 224
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=43.79 E-value=12 Score=32.83 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=27.7
Q ss_pred CcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 91 DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 91 ~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
+|..|+||..|+=.-....+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999988877888999999999985
No 225
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=43.58 E-value=36 Score=28.18 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 008904 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (549)
Q Consensus 146 ~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 224 (549)
.++.+..+.++++-+++.++ +|........+.+...+... |+++... + .++....+++-+ .+.+++++
T Consensus 19 HGQVat~W~k~~~~~~IiVv-nD~vA~D~~~k~~lkmA~P~~gvk~~i~---s------ve~ai~~~~~~~-~~~~v~il 87 (168)
T 3eye_A 19 HGQVGVTWTSTIGANLLVVV-DDVVANDDIQQKLMGITAETYGFGIRFF---T------IEKTINVIGKAA-PHQKIFLI 87 (168)
T ss_dssp TTHHHHHHHHHHTCSEEEEE-CHHHHHSGGGGHHHHHHHHHHTCEEEEE---C------HHHHHHHGGGCC-TTCCEEEE
T ss_pred chhhhheeccccCCCEEEEE-cccccCCHHHHHHHHhcCCCCCCeEEEE---E------HHHHHHHHhccc-CCceEEEE
Confidence 47888999999999999655 44444444566666666666 8877652 2 233333443333 56789999
Q ss_pred EcchHHHHHHHH
Q 008904 225 HGYSRTGLMVFD 236 (549)
Q Consensus 225 ~~~~~~~~~il~ 236 (549)
+-++.++..+++
T Consensus 88 ~k~p~d~~~lve 99 (168)
T 3eye_A 88 CRTPQTVRKLVE 99 (168)
T ss_dssp ESSHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999988887753
No 226
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=43.54 E-value=39 Score=31.16 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=50.2
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~ 236 (549)
++|+++..+ ++|.....+.+.+.+++.|+.+.... +.. .+...-...++.+...+.+.||+... ...+...++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 467777643 34566667778888888897766421 111 22334456677777778888887643 333456677
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.|+
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 7777664
No 227
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=43.37 E-value=59 Score=30.18 Aligned_cols=82 Identities=4% Similarity=0.034 Sum_probs=47.1
Q ss_pred cEEEEEEec---CCcccchHHHHHHHHhhcCeEEEEEEccCC-CCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHH
Q 008904 160 GEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPP-DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (549)
Q Consensus 160 ~~v~ii~~~---~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il 235 (549)
..|+++..+ ++|.....+.+.+.+++.|..+........ . .+.......++.+...+.+.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 367777754 455566677888888888876554321111 0 1133344567777667788888844333223455
Q ss_pred HHHHHcCC
Q 008904 236 DVAQRLGM 243 (549)
Q Consensus 236 ~~a~~~g~ 243 (549)
+.+.+.+.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 56655553
No 228
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=43.11 E-value=82 Score=28.48 Aligned_cols=79 Identities=5% Similarity=0.014 Sum_probs=49.0
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVF 235 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il 235 (549)
++|+++..+ ++|.....+.+.+.+++.|. .+..... . .+.......++.+...+.+.||+.... ......+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~----~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS-Q----NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 467777753 34556677788888888886 7655321 1 123334556777777788888876533 3344566
Q ss_pred HHHHHcCC
Q 008904 236 DVAQRLGM 243 (549)
Q Consensus 236 ~~a~~~g~ 243 (549)
+.+.+.++
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77766554
No 229
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=42.96 E-value=74 Score=28.51 Aligned_cols=79 Identities=5% Similarity=0.034 Sum_probs=50.0
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
++|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS-Q----NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 467888754 456666778888888889988765322 1 123334556777777788888886543 33334566
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.++
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666554
No 230
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=42.27 E-value=89 Score=25.67 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=39.5
Q ss_pred EEEEEEecCC-----cccchHHHHHHH----HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 161 EVIAIFNDDD-----QGRNGVTALGDK----LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 161 ~v~ii~~~~~-----~g~~~~~~l~~~----~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
+++||...|. .-......+.+. +++.|+.+.....++. +...+...+++..+.++|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D----d~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE----GYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS----SHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC----CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 5666665432 112345677778 8888988877666663 3667777887776545888888754
No 231
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=42.14 E-value=71 Score=26.55 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=35.1
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcc
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 227 (549)
....+.+.+++.|+.|.....++.+ ...+...+.+... ..+|+||..+.
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 4567888899999999887777633 5666666666543 56788888754
No 232
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=42.06 E-value=31 Score=28.46 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEE
Q 008904 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (549)
Q Consensus 146 ~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 225 (549)
.++....+.++++-+++.++ +|........+.+...+...|+.+... + .++....+++-+..+.++++++
T Consensus 15 HGQV~t~W~~~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~---s------ve~ai~~~~~~~~~~~~v~ll~ 84 (163)
T 1ble_A 15 HGQILTRWIKVHAADRIIVV-SDDIAQDEMRKTLILSVAPSNVKASAV---S------VSKMAKAFHSPRYEGVTAMLLF 84 (163)
T ss_dssp CTTHHHHHHHHHTCSEEEEE-CHHHHHCHHHHHHHHTSSCTTSEEEEE---C------HHHHHHHHHCSTTTTCEEEEEE
T ss_pred chhheeeeccccCCCEEEEe-CccccCCHHHHHHHHhhCCCCCeEEEE---E------HHHHHHHHhcccCCCceEEEEE
Confidence 46788899999999999655 444433345555555555567776542 2 3344444544444667899999
Q ss_pred cchHHHHHHH
Q 008904 226 GYSRTGLMVF 235 (549)
Q Consensus 226 ~~~~~~~~il 235 (549)
-++.++..++
T Consensus 85 k~p~d~~~lv 94 (163)
T 1ble_A 85 ENPSDIVSLI 94 (163)
T ss_dssp SSSHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998887664
No 233
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=41.84 E-value=46 Score=30.19 Aligned_cols=82 Identities=7% Similarity=-0.057 Sum_probs=53.3
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~ 236 (549)
.+|+++..+ ++|.....+.+.+.+++.|+.+.....-... +.......++.+...+.+.||+... .......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGAN---DVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSC---CHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcC---CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 367777754 4566677788888899999887764311101 2344556777777788888887543 344456677
Q ss_pred HHHHcCCC
Q 008904 237 VAQRLGMM 244 (549)
Q Consensus 237 ~a~~~g~~ 244 (549)
.+.+.|+.
T Consensus 81 ~~~~~giP 88 (297)
T 3rot_A 81 RANKLNIP 88 (297)
T ss_dssp HHHHHTCC
T ss_pred HHHHCCCC
Confidence 77776653
No 234
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=41.75 E-value=2.3e+02 Score=26.70 Aligned_cols=133 Identities=16% Similarity=0.078 Sum_probs=74.4
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...++.-.-.+.++-..+.++.-+++|+--. .....+
T Consensus 72 ~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~--~~~~~~ 139 (358)
T 4h31_A 72 NIALIFEKAS---TRTRCAFEVAAFDQ-------GAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRG--FGQAIV 139 (358)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEEC--SCHHHH
T ss_pred EEEEEeCCCC---hhhHHHHHHHHHHc-------CCeEEECCcccccccCccchhHHHHHhhccCceeEecc--cchhHH
Confidence 5788887654 36788999999884 44544333333322222333333344443244444211 123445
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcCC-----cEEEEEEecCCcccchHHHH
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFGW-----GEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~W-----~~v~ii~~~~~~g~~~~~~l 179 (549)
..++....+|+|. +-+ +.. .| .+++++++ .++++ .+|+++. |.. ......+
T Consensus 140 ~~la~~s~vPVIN-G~g-----~~~-------HP-----tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG--D~~-~~va~S~ 198 (358)
T 4h31_A 140 EELGAFAGVPVWN-GLT-----DEF-------HP-----TQILADFLTMLEHSQGKALADIQFAYLG--DAR-NNVGNSL 198 (358)
T ss_dssp HHHHHHSSSCEEE-SCC-----SSC-------CH-----HHHHHHHHHHHHTTTTCCGGGCEEEEES--CTT-SHHHHHH
T ss_pred HHhhhhccCceEC-CCC-----cCC-------Cc-----hHHHHHHHHHHHHhcCCCcCceEEEecC--CCC-cccchHH
Confidence 5667778899997 322 111 12 37777775 34553 3676664 322 2567777
Q ss_pred HHHHhhcCeEEEEE
Q 008904 180 GDKLAEIRCKISYK 193 (549)
Q Consensus 180 ~~~~~~~g~~v~~~ 193 (549)
...+...|..|...
T Consensus 199 ~~~~~~~g~~v~~~ 212 (358)
T 4h31_A 199 MVGAAKMGMDIRLV 212 (358)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHhcCceEEEe
Confidence 78888889887664
No 235
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=41.73 E-value=30 Score=29.27 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEE
Q 008904 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (549)
Q Consensus 146 ~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 225 (549)
.++++..+.++++-+++.++ +|........+.+...+...|+.+... + .++....+++-+..+.++++++
T Consensus 35 HGQVat~W~k~~~~~~IiVv-nD~vA~D~~~k~~lkmA~P~gvk~~i~---s------ve~ai~~~~~~~~~~~~v~il~ 104 (187)
T 3lfj_A 35 HGQVMTRWMKGFPEASIVII-DDELAVDEFMKNIYTMAAPPGVKVKVF---G------VDAALKEWSQKTSVEEKVFLLF 104 (187)
T ss_dssp CTTHHHHHHTTCTTCEEEEE-CHHHHHCHHHHHHHHHTSCTTCCEEEE---C------HHHHHHHHHSBCSSCEEEEEEE
T ss_pred hhhhhheeccccCCCEEEEE-CccccCCHHHHHHHHHhccCCCeEEEE---E------HHHHHHHHhCCccCCceEEEEE
Confidence 47888999999999999655 454444445566666665567766542 2 2333344444333456889999
Q ss_pred cchHHHHHHHH
Q 008904 226 GYSRTGLMVFD 236 (549)
Q Consensus 226 ~~~~~~~~il~ 236 (549)
-++.++..+++
T Consensus 105 k~p~d~~~lve 115 (187)
T 3lfj_A 105 KNIDTCKRVMD 115 (187)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99988887753
No 236
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=41.65 E-value=46 Score=30.36 Aligned_cols=84 Identities=1% Similarity=-0.126 Sum_probs=51.8
Q ss_pred HHHcCCcEEEEEEec-------CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 154 VSYFGWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 154 l~~~~W~~v~ii~~~-------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
++.-.-+.|+++..+ ++|.....+.+.+.+++.|..+... ... .........++.+...+.+.||+..
T Consensus 17 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 91 (305)
T 3huu_A 17 LITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFILLY 91 (305)
T ss_dssp ----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred hhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEeC
Confidence 444455788888766 3456667788888888999887652 211 1223345677778888889888865
Q ss_pred chHHHHHHHHHHHHcCC
Q 008904 227 YSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 227 ~~~~~~~il~~a~~~g~ 243 (549)
.... ...++.+.+.++
T Consensus 92 ~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 92 SLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp CBTT-CHHHHHHHHTTC
T ss_pred CcCC-cHHHHHHHHcCC
Confidence 4322 245666666664
No 237
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=41.33 E-value=2e+02 Score=25.89 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=37.6
Q ss_pred CCCceEEEEEecCC------CChHHHHHHHH----HHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEe
Q 008904 61 LGGRKLSITMHDAK------FNGFLSIMGAL----QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (549)
Q Consensus 61 l~g~~l~~~~~d~~------~~~~~a~~~~~----~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 120 (549)
+|+..+-| +.|+. .+.....+.+. .+.+.++.+|+=+.++..+.++..+-+.+.+|+|.
T Consensus 47 lP~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 47 RLFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp TCCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 47777755 34543 23333333333 23344999999887777666677777888999996
No 238
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.67 E-value=1e+02 Score=28.50 Aligned_cols=83 Identities=7% Similarity=0.013 Sum_probs=52.0
Q ss_pred HHcCCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHH
Q 008904 155 SYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232 (549)
Q Consensus 155 ~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 232 (549)
+.-.-+.|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+.......
T Consensus 58 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 131 (339)
T 3h5o_A 58 ASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H----YDAGQELQLLRAYLQHRPDGVLITGLSHAE- 131 (339)
T ss_dssp -----CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCT-
T ss_pred hcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHcCCCCEEEEeCCCCCH-
Confidence 33344678888864 456777888999999999988765432 1 123445567788888888988886543221
Q ss_pred HHHHHHHHcCC
Q 008904 233 MVFDVAQRLGM 243 (549)
Q Consensus 233 ~il~~a~~~g~ 243 (549)
..++.+.+.++
T Consensus 132 ~~~~~l~~~~i 142 (339)
T 3h5o_A 132 PFERILSQHAL 142 (339)
T ss_dssp THHHHHHHTTC
T ss_pred HHHHHHhcCCC
Confidence 34555666554
No 239
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=40.54 E-value=2.3e+02 Score=26.29 Aligned_cols=136 Identities=10% Similarity=0.131 Sum_probs=77.0
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCC------------hHHHHHHHHHHHhcCcE
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFN------------GFLSIMGALQFMETDTL 93 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~------------~~~a~~~~~~l~~~~v~ 93 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++.. -.+.++-..+.++.-++
T Consensus 36 gk~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D 105 (324)
T 1js1_X 36 NKTLLMIFFNSS---LRTRLSTQKAALNL-------GMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCD 105 (324)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCS
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCc
Confidence 356888887655 46788999999985 344444433332222 22334444444444344
Q ss_pred EEEcCCC--c------hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---C
Q 008904 94 AIVGPQS--A------VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---W 159 (549)
Q Consensus 94 aiiGp~~--s------~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W 159 (549)
+|+-=.. - .....+..++....+|+|.-+ + +... | .+++++++ .++| .
T Consensus 106 ~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa~--~----~~~H-------P-----tQaLaDl~Ti~e~~g~~~l 167 (324)
T 1js1_X 106 IIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSME--A----ATRH-------P-----LQSFADLITIEEYKKTARP 167 (324)
T ss_dssp EEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEESS--C----SSCC-------H-----HHHHHHHHHHHHHCSSSSC
T ss_pred EEEEecccccccccccccchHHHHHHhhCCCCEEECC--C----CCCC-------c-----HHHHHHHHHHHHHcCCCCe
Confidence 4442111 0 133445566777789999832 1 1111 2 36677764 5577 3
Q ss_pred cEEEEEE-----ecCCcccchHHHHHHHHhhcCeEEEEE
Q 008904 160 GEVIAIF-----NDDDQGRNGVTALGDKLAEIRCKISYK 193 (549)
Q Consensus 160 ~~v~ii~-----~~~~~g~~~~~~l~~~~~~~g~~v~~~ 193 (549)
+ +.+.+ -.| ......+...+.+.|.+|...
T Consensus 168 ~-l~ia~a~~~~vGD---~rva~Sl~~~~~~~G~~v~~~ 202 (324)
T 1js1_X 168 K-VVMTWAPHPRPLP---QAVPNSFAEWMNATDYEFVIT 202 (324)
T ss_dssp E-EEEECCCCSSCCC---SHHHHHHHHHHHTSSSEEEEE
T ss_pred e-EEEEEEcccccCC---cchHHHHHHHHHHCCCEEEEe
Confidence 4 44444 333 356778888888889887764
No 240
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=40.33 E-value=64 Score=26.52 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=41.6
Q ss_pred cEEEEEEecCC-----cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 160 GEVIAIFNDDD-----QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 160 ~~v~ii~~~~~-----~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
-+++||...|. .-......+...+++.|..+.....++ .+ ..+...+++..+.++|+||..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 46777776542 123455678888889998887655554 34 66777777765456888888754
No 241
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=40.17 E-value=2.3e+02 Score=26.77 Aligned_cols=134 Identities=18% Similarity=0.088 Sum_probs=75.3
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.-.|+.+|...+ .+-+.+|+.|+.++ +|..+.+...+++-.-.+.++-..+.++.-+++|+- ....
T Consensus 71 GK~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~--- 137 (365)
T 4amu_A 71 GKNIAILFQKDS---TRTRCAFEVAASDL-------GAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFAQ--- 137 (365)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSCH---
T ss_pred CceEEEEecCCC---chHHHHHHHHHHhC-------CCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCCh---
Confidence 356888987765 47788999999996 344444322233322222233333333332444442 2222
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~ 178 (549)
..+..++...++|+|.-+ ++ ... | .+++++++ .++| ..+|+++. |.. ......
T Consensus 138 ~~~~~lA~~s~vPVINa~-~~-----~~H-------P-----tQaLaDl~Ti~E~~G~l~glkva~vG--D~~-nnva~S 196 (365)
T 4amu_A 138 SDVDALVKYSGVPVWNGL-TD-----DEH-------P-----TQIIADFMTMKEKFGNLKNKKIVFIG--DYK-NNVGVS 196 (365)
T ss_dssp HHHHHHHHHHCSCEEEEE-CS-----SCC-------H-----HHHHHHHHHHHHHHSSCTTCEEEEES--STT-SHHHHH
T ss_pred hHHHHHHHhCCCCEEeCC-CC-----CCC-------c-----HHHHHHHHHHHHHhCCCCCCEEEEEC--CCC-cchHHH
Confidence 344556666789999853 21 111 2 36667664 4555 46777664 321 236777
Q ss_pred HHHHHhhcCeEEEEE
Q 008904 179 LGDKLAEIRCKISYK 193 (549)
Q Consensus 179 l~~~~~~~g~~v~~~ 193 (549)
+...+...|..+...
T Consensus 197 l~~~~~~lG~~v~~~ 211 (365)
T 4amu_A 197 TMIGAAFNGMHVVMC 211 (365)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888889887664
No 242
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=39.52 E-value=72 Score=28.42 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=66.2
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCCch
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~ 102 (549)
+.=+|+.+...... ......++.-|+++.+ .++...+.....+...+.+.+.+++.. .+.||+...+.
T Consensus 117 G~~~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~- 186 (280)
T 3gyb_A 117 GHTHIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDI- 186 (280)
T ss_dssp TCCSEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHH-
T ss_pred CCCeEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECChH-
Confidence 33467777665433 4555677877777632 222222234445677777788888875 58999985443
Q ss_pred HHHHHHHhhhhcC------CcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH
Q 008904 103 MAHVLSHLANELQ------VPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (549)
Q Consensus 103 ~~~~va~~~~~~~------iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~ 156 (549)
.+..+...+...+ +.++++.... +.....|.+..+..+...++...++++..
T Consensus 187 ~a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~~ 244 (280)
T 3gyb_A 187 TAIGALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLLS 244 (280)
T ss_dssp HHHHHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHHH
Confidence 3434444444443 3466653321 22222344445556666677766666543
No 243
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.43 E-value=1.2e+02 Score=27.09 Aligned_cols=80 Identities=5% Similarity=-0.093 Sum_probs=49.0
Q ss_pred CCcEEEEEEec----CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHH
Q 008904 158 GWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (549)
Q Consensus 158 ~W~~v~ii~~~----~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 233 (549)
.=.+|+++..+ ++|.....+.+.+.+++.|..+.... .. .+.......++.+...+.+.||+...... ..
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~ 91 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GK--HSAEEERQAIQYLLDLRCDAIMIYPRFLS-VD 91 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CT--TSHHHHHHHHHHHHHTTCSEEEEECSSSC-HH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEEEecCCCC-hH
Confidence 44678888864 35666777888888999998876532 11 12334456677777778888888654321 13
Q ss_pred HHHHHHH-cCC
Q 008904 234 VFDVAQR-LGM 243 (549)
Q Consensus 234 il~~a~~-~g~ 243 (549)
.++.+.+ .++
T Consensus 92 ~~~~l~~~~~i 102 (296)
T 3brq_A 92 EIDDIIDAHSQ 102 (296)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHhcCCC
Confidence 4455555 554
No 244
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=39.16 E-value=90 Score=28.03 Aligned_cols=78 Identities=14% Similarity=-0.044 Sum_probs=48.6
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~ 237 (549)
+.|+++..+ ++|.......+.+.+++.|..+..... . .+.......++.+...+.+.||+...... ...++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-D----QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 478888754 445666778888888889987765321 1 12334456677777778888888653211 234555
Q ss_pred HHHcCC
Q 008904 238 AQRLGM 243 (549)
Q Consensus 238 a~~~g~ 243 (549)
+.+.++
T Consensus 91 l~~~~i 96 (289)
T 2fep_A 91 FKRSPV 96 (289)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 555553
No 245
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=38.94 E-value=97 Score=28.87 Aligned_cols=65 Identities=3% Similarity=-0.068 Sum_probs=41.3
Q ss_pred CCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 158 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
.-..|+++..+ ++|.......+.+.+++.|..+..... . . .........++.+...+.+.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-R--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-S--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-C--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 44678888854 345556677888888899988765432 1 1 1123344567777777888888763
No 246
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=38.67 E-value=89 Score=28.50 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=40.9
Q ss_pred EEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 68 ITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 68 ~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
+.+.|+=|.....-+.+..-+.+ .+..|||+..|+.+.-+.+++...+.|..-.
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~I 241 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHI 241 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEe
Confidence 34678777776666655554444 7888889999999999999999998886543
No 247
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.48 E-value=1.2e+02 Score=22.61 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=42.8
Q ss_pred EEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc--hHHHHHHHHHH
Q 008904 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVA 238 (549)
Q Consensus 161 ~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~il~~a 238 (549)
+| +|.+++. .....+...+++.|..+... . +....++.+++..+++|++... ..+...+++++
T Consensus 5 ~i-livdd~~---~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l 69 (127)
T 3i42_A 5 QA-LIVEDYQ---AAAETFKELLEMLGFQADYV---M--------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQL 69 (127)
T ss_dssp EE-EEECSCH---HHHHHHHHHHHHTTEEEEEE---S--------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHH
T ss_pred eE-EEEcCCH---HHHHHHHHHHHHcCCCEEEE---C--------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 44 3444443 35677788888888765432 1 2345566777778999999754 34567788888
Q ss_pred HHc
Q 008904 239 QRL 241 (549)
Q Consensus 239 ~~~ 241 (549)
++.
T Consensus 70 ~~~ 72 (127)
T 3i42_A 70 RAL 72 (127)
T ss_dssp HHS
T ss_pred Hhh
Confidence 775
No 248
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=38.03 E-value=2.4e+02 Score=25.82 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=80.1
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++..-.+.++-..+-++.-+++|+- ... .
T Consensus 45 gk~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~---~ 111 (301)
T 2ef0_A 45 GKVLALLFEKPS---LRTRTTLEVAMVHL-------GGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFR---H 111 (301)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSS---H
T ss_pred CCEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCC---h
Confidence 346788887654 57788999999884 455566654444433334455555555654555553 222 3
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~ 178 (549)
..+..++...++|+|.-+ ++ ... | .+++++++ +++| -.+|+++.+ . ......
T Consensus 112 ~~~~~la~~~~vPVINa~-~~-----~~H-------P-----tQaLaDl~Ti~e~~g~l~gl~ia~vGD--~--~rva~S 169 (301)
T 2ef0_A 112 ETVEALARHAKVPVVNAL-SD-----RAH-------P-----LQALADLLTLKEVFGGLAGLEVAWVGD--G--NNVLNS 169 (301)
T ss_dssp HHHHHHHHHCSSCEEEEE-CS-----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHHHH
T ss_pred HHHHHHHHHCCCCEEeCC-CC-----ccC-------c-----hHHHHHHHHHHHHhCCcCCcEEEEECC--C--chhHHH
Confidence 334556667789999843 21 111 2 36677764 4444 357776653 2 356777
Q ss_pred HHHHHhhcCeEEEEE
Q 008904 179 LGDKLAEIRCKISYK 193 (549)
Q Consensus 179 l~~~~~~~g~~v~~~ 193 (549)
+...+...|.++...
T Consensus 170 l~~~~~~~g~~v~~~ 184 (301)
T 2ef0_A 170 LLEVAPLAGLKVRVA 184 (301)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888889887764
No 249
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.51 E-value=1.3e+02 Score=22.62 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=41.4
Q ss_pred cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch--HHHHHHHHH
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDV 237 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~il~~ 237 (549)
.+|. |.+++. .....+...+++.|..+... . +....++.++...+++|++.... .....++++
T Consensus 7 ~~il-ivdd~~---~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~ 71 (132)
T 3lte_A 7 KRIL-VVDDDQ---AMAAAIERVLKRDHWQVEIA---H--------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRS 71 (132)
T ss_dssp CEEE-EECSCH---HHHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHH
T ss_pred ccEE-EEECCH---HHHHHHHHHHHHCCcEEEEe---C--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 3554 444443 25566777777777765431 1 23345666667788999987553 446677777
Q ss_pred HHHcC
Q 008904 238 AQRLG 242 (549)
Q Consensus 238 a~~~g 242 (549)
+++..
T Consensus 72 l~~~~ 76 (132)
T 3lte_A 72 LRQNK 76 (132)
T ss_dssp HHTTT
T ss_pred HHhcC
Confidence 77654
No 250
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=37.44 E-value=33 Score=30.55 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=49.2
Q ss_pred HHHHHHHHHH-----HcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCC-CChhhHHHHHHHHhcCCC
Q 008904 146 LMSAIAEMVS-----YFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS-VTETDVRNELVKVRMMEA 219 (549)
Q Consensus 146 ~~~ai~~~l~-----~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~ 219 (549)
.++.+++.+. ...-++|.++..+. ....+.+.+++.|..|.....|..... .....+ .+.+.....
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~~~ 186 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRAERL 186 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHHTTC
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHhCCC
Confidence 4577777775 34557887766433 345577788889987765443322100 112223 333444455
Q ss_pred eEEEEEcchHHHHHHHHHHH
Q 008904 220 RVIVVHGYSRTGLMVFDVAQ 239 (549)
Q Consensus 220 ~viil~~~~~~~~~il~~a~ 239 (549)
++| ++.++..+..+++.+.
T Consensus 187 d~v-~ftS~s~v~~~~~~~~ 205 (254)
T 4es6_A 187 NGL-VVSSGQGLQNLYQLAA 205 (254)
T ss_dssp CEE-ECCSHHHHHHHHHHHG
T ss_pred CEE-EEcCHHHHHHHHHHhh
Confidence 654 4677888888887664
No 251
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=37.34 E-value=81 Score=28.74 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=46.9
Q ss_pred EEEEEEecCC-cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHHH
Q 008904 161 EVIAIFNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVA 238 (549)
Q Consensus 161 ~v~ii~~~~~-~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~a 238 (549)
+|+++..+.. |.....+.+.+.+++.|+.+.... +.. .+.......++.+...+.+.||+... .......++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQK--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5666664322 555666777778888888776532 111 12334455677776677888887543 33334566667
Q ss_pred HHcCC
Q 008904 239 QRLGM 243 (549)
Q Consensus 239 ~~~g~ 243 (549)
.+.++
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66664
No 252
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=37.30 E-value=31 Score=32.18 Aligned_cols=50 Identities=6% Similarity=-0.183 Sum_probs=37.9
Q ss_pred ceeeeeeHHHHHHHHHh----CCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceE
Q 008904 485 DIVHGYCIDVFLAAVRL----LPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVA 542 (549)
Q Consensus 485 ~~~~G~~idl~~~~~~~----l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~t 542 (549)
+.|..+...|.+.+.+. +|++ +++... +...+.+..|.+|++|++++..+
T Consensus 43 G~~~~~~~~la~~l~~~~~~~~g~~--v~v~~~------~g~~~~i~~l~~g~~D~~~~~~~ 96 (327)
T 4ddd_A 43 GVYYPIGGSICRFIASDYGKDNKII--CSISST------TGSVYNLNSIRYSNMDISIVQSD 96 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHGGGTSEE--EEEECC------CCHHHHHHHHHTTSCSEEEEEHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCCeE--EEEEec------CcHHHHHHHHHcCCCcEEEECcH
Confidence 34556777888888887 6777 777654 35678899999999999986544
No 253
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=37.27 E-value=2.6e+02 Score=26.03 Aligned_cols=134 Identities=17% Similarity=0.082 Sum_probs=75.1
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++-.-.+.++-..+.++.-+++|+- ... .
T Consensus 45 gk~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~---~ 111 (335)
T 1dxh_A 45 RKNIALIFEKTS---TRTRCAFEVAAYDQ-------GANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFK---Q 111 (335)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSC---H
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCC---h
Confidence 346888887654 47788999999984 344444432232222222333333333332344442 222 3
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC--C--cEEEEEEecCCcccchHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG--W--GEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~--W--~~v~ii~~~~~~g~~~~~ 177 (549)
..+..++...++|+|.-+ ++ ... | .+++++++ .++| . .+|+++. |.. .....
T Consensus 112 ~~~~~lA~~s~vPVINa~-~~-----~~H-------P-----tQ~LaDl~Ti~e~~g~~l~gl~va~vG--D~~-~~va~ 170 (335)
T 1dxh_A 112 EIVEELAKFAGVPVFNGL-TD-----EYH-------P-----TQMLADVLTMREHSDKPLHDISYAYLG--DAR-NNMGN 170 (335)
T ss_dssp HHHHHHHHHSSSCEEEEE-CS-----SCC-------H-----HHHHHHHHHHHHTCSSCGGGCEEEEES--CCS-SHHHH
T ss_pred hHHHHHHHhCCCCEEcCC-CC-----CCC-------c-----HHHHHHHHHHHHHcCCCcCCeEEEEec--CCc-cchHH
Confidence 344556667789999832 21 111 2 36777774 5566 2 4666654 322 35677
Q ss_pred HHHHHHhhcCeEEEEE
Q 008904 178 ALGDKLAEIRCKISYK 193 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~ 193 (549)
.+...+...|.++...
T Consensus 171 Sl~~~~~~~G~~v~~~ 186 (335)
T 1dxh_A 171 SLLLIGAKLGMDVRIA 186 (335)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888888889887764
No 254
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=36.47 E-value=1.6e+02 Score=26.36 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 81 ~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
.+.+..+...++.+|+-+.++... .+..+-...++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 334444556699999998877654 5566667789999974
No 255
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.40 E-value=91 Score=22.34 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEE
Q 008904 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKIS 191 (549)
Q Consensus 143 ~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~ 191 (549)
+..+..-+.+++..+|++-+.++.+.|. ..++.|...++.+|..|.
T Consensus 60 dkqllkemlelisklgykvflllqdqde---neleefkrkiesqgyevr 105 (134)
T 2lci_A 60 DKQLLKEMLELISKLGYKVFLLLQDQDE---NELEEFKRKIESQGYEVR 105 (134)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECSCH---HHHHHHHHHHHTTTCEEE
T ss_pred cHHHHHHHHHHHHHhCceeEEEeecCch---hHHHHHHHHHHhCCeeee
Confidence 3344455555555555555544443332 344555555555555443
No 256
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=36.37 E-value=73 Score=28.77 Aligned_cols=78 Identities=8% Similarity=0.082 Sum_probs=47.7
Q ss_pred CcEEEEEEe------cCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHH
Q 008904 159 WGEVIAIFN------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232 (549)
Q Consensus 159 W~~v~ii~~------~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 232 (549)
=+.|+++.. +++|.......+.+.+++.|..+.....-. . ......++.+...+.+.||+.......
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~-----~~~~~~~~~l~~~~vdGiIi~~~~~~~- 78 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-G-----EKYQSLIHLVETRRVDALIVAHTQPED- 78 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-T-----CCCHHHHHHHHHTCCSEEEECSCCSSC-
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-h-----hhHHHHHHHHHcCCCCEEEEeCCCCCh-
Confidence 356888876 234556677888888888898776544322 1 122345666666778888876543222
Q ss_pred HHHHHHHHcCC
Q 008904 233 MVFDVAQRLGM 243 (549)
Q Consensus 233 ~il~~a~~~g~ 243 (549)
..++.+.+.++
T Consensus 79 ~~~~~l~~~~i 89 (294)
T 3qk7_A 79 FRLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 45566666664
No 257
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=36.20 E-value=95 Score=25.74 Aligned_cols=61 Identities=8% Similarity=0.073 Sum_probs=34.3
Q ss_pred EEEEEEecCC-----cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 161 EVIAIFNDDD-----QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 161 ~v~ii~~~~~-----~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
++++|...|. .-......+...+++.|+.+.....++. +...+...+++..+. +|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D----d~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD----DLDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS----CHHHHHHHHHHHHHH-CSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC----CHHHHHHHHHHHHhc-CCEEEEcC
Confidence 4566654432 1123456677777777777776655552 255555556554332 56666654
No 258
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=36.14 E-value=81 Score=28.59 Aligned_cols=84 Identities=6% Similarity=-0.066 Sum_probs=50.4
Q ss_pred HHHcCCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHH
Q 008904 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (549)
Q Consensus 154 l~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 231 (549)
|+.-+=+.|+++..+ ++|.....+.+.+.+++.|..+.....- .+.......++.+...+.+.||+.......
T Consensus 10 L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 10 LRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID-----APPRGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp -------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC-----STTHHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred HhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 333344568888764 4566777888889999999887654321 123344667888888889988886543322
Q ss_pred HHHHHHHHHcCC
Q 008904 232 LMVFDVAQRLGM 243 (549)
Q Consensus 232 ~~il~~a~~~g~ 243 (549)
...+..+.+ ++
T Consensus 85 ~~~~~~l~~-~i 95 (303)
T 3kke_A 85 DDMLAAVLE-GV 95 (303)
T ss_dssp HHHHHHHHT-TS
T ss_pred HHHHHHHhC-CC
Confidence 115555655 54
No 259
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=36.12 E-value=2.7e+02 Score=25.89 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=77.7
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++-.-.+.++-..+-++.-+++|+- ... .
T Consensus 44 gk~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~---~ 110 (333)
T 1duv_G 44 GKNIALIFEKDS---TRTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG---Q 110 (333)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSC---H
T ss_pred CCEEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCC---c
Confidence 346888887654 36788999999984 444444433333323334455555555554555553 222 2
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HH-cC--C--cEEEEEEecCCcccchH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SY-FG--W--GEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~-~~--W--~~v~ii~~~~~~g~~~~ 176 (549)
..+..++...++|+|.-+ + +... | .+++++++ .+ +| . .+|+++. |.. ....
T Consensus 111 ~~~~~lA~~~~vPVINa~-~-----~~~H-------P-----tQ~LaDl~Ti~e~~~g~~l~gl~ia~vG--D~~-~~va 169 (333)
T 1duv_G 111 EIVETLAEYASVPVWNGL-T-----NEFH-------P-----TQLLADLLTMQEHLPGKAFNEMTLVYAG--DAR-NNMG 169 (333)
T ss_dssp HHHHHHHHHHSSCEEESC-C-----SSCC-------H-----HHHHHHHHHHHHHSTTCCGGGCEEEEES--CTT-SHHH
T ss_pred hHHHHHHHhCCCCeEcCC-C-----CCCC-------c-----hHHHHHHHHHHHHhcCCCCCCcEEEEEC--CCc-cchH
Confidence 334455566689999832 1 1111 2 36667664 55 66 2 4666654 322 3567
Q ss_pred HHHHHHHhhcCeEEEEE
Q 008904 177 TALGDKLAEIRCKISYK 193 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~ 193 (549)
..+...+...|..+...
T Consensus 170 ~Sl~~~~~~~G~~v~~~ 186 (333)
T 1duv_G 170 NSMLEAAALTGLDLRLV 186 (333)
T ss_dssp HHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77778888889887664
No 260
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=35.93 E-value=2.6e+02 Score=25.66 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=73.6
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEec-CCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD-AKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d-~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
-.++.+|-..+ .+-+.+|+.|+.++ +|..+.+...+ +.-.-.+.++-..+-++.-+++|+- .....
T Consensus 45 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~-- 112 (308)
T 1ml4_A 45 KILATLFFEPS---TRTRLSFESAMHRL-------GGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEG-- 112 (308)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEESCGGGSGGGGTCCHHHHHHHHTTTCSEEEEEESSTT--
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHh-------CCeEEEeCCCccccccCCCCHHHHHHHHHHhCcEEEEecCChh--
Confidence 35788886654 46788888888884 34444443333 1211223344444445554454442 22222
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC-C--cEEEEEEecCCcccchHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG-W--GEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~-W--~~v~ii~~~~~~g~~~~~~ 178 (549)
.+..++....+|+|.-+..+. .. | .+++++++ .++| + .+|+++. |..++ .....
T Consensus 113 -~~~~la~~~~vPVINag~g~~-----~H-------P-----tQ~LaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rva~S 172 (308)
T 1ml4_A 113 -AARLAAEVAEVPVINAGDGSN-----QH-------P-----TQTLLDLYTIKKEFGRIDGLKIGLLG-DLKYG-RTVHS 172 (308)
T ss_dssp -HHHHHHHTCSSCEEEEEETTS-----CC-------H-----HHHHHHHHHHHHHSSCSSSEEEEEES-CTTTC-HHHHH
T ss_pred -HHHHHHHhCCCCEEeCccCCc-----cC-------c-----HHHHHHHHHHHHHhCCCCCeEEEEeC-CCCcC-chHHH
Confidence 234455666799998533221 11 2 36777774 4555 2 4666654 22223 45677
Q ss_pred HHHHHhhcCeEEEEE
Q 008904 179 LGDKLAEIRCKISYK 193 (549)
Q Consensus 179 l~~~~~~~g~~v~~~ 193 (549)
+...+...|.++...
T Consensus 173 l~~~~~~~G~~v~~~ 187 (308)
T 1ml4_A 173 LAEALTFYDVELYLI 187 (308)
T ss_dssp HHHHGGGSCEEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 778888889887664
No 261
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=35.74 E-value=89 Score=27.72 Aligned_cols=76 Identities=4% Similarity=-0.022 Sum_probs=49.2
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHH-
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD- 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~- 236 (549)
+.|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+..... ..++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~~~ 80 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS-D----NDIKKAQGYLATFVSHNCTGMISTAFNE---NIIEN 80 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECGGGH---HHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCh---HHHHH
Confidence 567888764 456667778888889999987765322 1 1234455677778778889988876332 3355
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.|+
T Consensus 81 ~l~~~~i 87 (277)
T 3e61_A 81 TLTDHHI 87 (277)
T ss_dssp HHHHC-C
T ss_pred HHHcCCC
Confidence 6666664
No 262
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=35.47 E-value=1.2e+02 Score=28.21 Aligned_cols=83 Identities=11% Similarity=0.002 Sum_probs=50.9
Q ss_pred HHcCCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHH
Q 008904 155 SYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232 (549)
Q Consensus 155 ~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 232 (549)
+.-.-+.|+++..+ ++|.......+.+.+++.|..+..... . .+...-...++.+...+.+.||+...... .
T Consensus 66 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~ 139 (355)
T 3e3m_A 66 TTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHT-E 139 (355)
T ss_dssp -----CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCC-H
T ss_pred hcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC-H
Confidence 33344678888864 345556778888889999988765432 1 12334456677777788888888654322 2
Q ss_pred HHHHHHHHcCC
Q 008904 233 MVFDVAQRLGM 243 (549)
Q Consensus 233 ~il~~a~~~g~ 243 (549)
..++.+.+.++
T Consensus 140 ~~~~~l~~~~i 150 (355)
T 3e3m_A 140 QTIRLLQRASI 150 (355)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHhCCC
Confidence 45566666664
No 263
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=35.36 E-value=2.4e+02 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=29.9
Q ss_pred HHHHHHHHh-cCcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 81 IMGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 81 ~~~~~~l~~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
.+.+..+.+ .++.+|+-+.++..+..+..+-+.+++|+|..
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc
Confidence 334445566 79999998777776656777777889999973
No 264
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.07 E-value=1.2e+02 Score=21.65 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=58.8
Q ss_pred CCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHH
Q 008904 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 212 (549)
Q Consensus 133 ~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~ 212 (549)
..+-.|+.-+...+-+.+-+++++|+-+-+.++.+|..+. +......+..|..+.... +.. +...+...-+
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewa----ekairfvkslgaqvliii-ydq----dqnrleefsr 95 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWA----EKAIRFVKSLGAQVLIII-YDQ----DQNRLEEFSR 95 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHH----HHHHHHHHHHCCCCEEEE-ECS----CHHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHH----HHHHHHHHhcCCeEEEEE-EeC----chhHHHHHHH
Confidence 3566888888888999999999999988887777554432 222233344555544432 232 2444555566
Q ss_pred HHhcCCCeEEEEEcchHHHHHHHHH-HHHcC
Q 008904 213 KVRMMEARVIVVHGYSRTGLMVFDV-AQRLG 242 (549)
Q Consensus 213 ~l~~~~~~viil~~~~~~~~~il~~-a~~~g 242 (549)
+++..+-.+--+ .++++...-+.. .++.|
T Consensus 96 evrrrgfevrtv-tspddfkkslerlirevg 125 (134)
T 2l69_A 96 EVRRRGFEVRTV-TSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHHTTCCEEEE-SSHHHHHHHHHHHHHHHC
T ss_pred HHHhcCceEEEe-cChHHHHHHHHHHHHHhc
Confidence 666666554433 455554444433 34445
No 265
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=34.21 E-value=1.6e+02 Score=26.57 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=64.6
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
+.=+||.+.......+.....+++-|+++. |.++......+ .....+.+.+++ .++.||+.+.+....
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~ 206 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVA 206 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHH
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHH
Confidence 455788887654322344456777666652 44554433322 233344445554 478888887665432
Q ss_pred ---HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH
Q 008904 105 ---HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (549)
Q Consensus 105 ---~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~ 156 (549)
.++...+...++|++.+... .+. .|-+..+..+...+++..++++.+
T Consensus 207 g~~~~l~~~~~~~~i~vig~d~~--~~~---~~~Lttv~~~~~~~G~~Aa~~l~~ 256 (302)
T 2qh8_A 207 SAIEGMIVAANQAKTPVFGAATS--YVE---RGAIASLGFDYYQIGVQTADYVAA 256 (302)
T ss_dssp TTHHHHHHHHHHTTCCEEESSHH--HHH---TTCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECCHH--HHh---CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 23444455578999986321 111 144555567777788877777544
No 266
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=33.92 E-value=1.2e+02 Score=26.71 Aligned_cols=79 Identities=1% Similarity=0.010 Sum_probs=48.9
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
+.|+++..+ ++|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-Q----NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 467777753 445566778888888888987765321 1 122333456677777788888885433 32234566
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.++
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666664
No 267
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=33.91 E-value=1.7e+02 Score=26.63 Aligned_cols=80 Identities=6% Similarity=-0.027 Sum_probs=49.1
Q ss_pred CcEEEEEEec-CCcccchHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHH
Q 008904 159 WGEVIAIFND-DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVF 235 (549)
Q Consensus 159 W~~v~ii~~~-~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il 235 (549)
-..|+++..+ ++|.......+.+.+++. |+.+..... . .+.......++.+...+.+.||+.... ......+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G----DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3578887754 234445566777788888 888765432 1 123344556777777788888886543 3334566
Q ss_pred HHHHHcCC
Q 008904 236 DVAQRLGM 243 (549)
Q Consensus 236 ~~a~~~g~ 243 (549)
+.+.+.++
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 67766664
No 268
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=33.89 E-value=2.1e+02 Score=26.48 Aligned_cols=76 Identities=14% Similarity=0.014 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCcc---cchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHH
Q 008904 159 WGEVIAIFNDDDQG---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (549)
Q Consensus 159 W~~v~ii~~~~~~g---~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il 235 (549)
-+++.+|+....-+ ....+.+...+++.|+.+.....-. ..+.....+++...+.+.||+.+....+..++
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~ 97 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEVV 97 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHHH
Confidence 36788888543321 1345678888888898776543322 12344455566556778888877777777777
Q ss_pred HHHHH
Q 008904 236 DVAQR 240 (549)
Q Consensus 236 ~~a~~ 240 (549)
..+.+
T Consensus 98 ~~l~~ 102 (337)
T 2qv7_A 98 NGIAE 102 (337)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 77643
No 269
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.78 E-value=1.7e+02 Score=26.92 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=50.3
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~ 237 (549)
+.|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-D----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 367887753 456667788888899999988765322 1 123444566777777888888886543222 45556
Q ss_pred HHHcCC
Q 008904 238 AQRLGM 243 (549)
Q Consensus 238 a~~~g~ 243 (549)
+.+.++
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 666664
No 270
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=33.45 E-value=54 Score=29.11 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceE
Q 008904 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVA 542 (549)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~t 542 (549)
+++.+-.+.+|++ .++..+ .|..+...+..|++||++.+.+
T Consensus 146 ~~iq~~l~~iGi~--v~i~~~-------~~~~~~~~~~~~~~d~~~~~w~ 186 (258)
T 3lvu_A 146 EIYTRALERLGIA--AQIEKV-------DNAQYTARVAELDFDLTPFRRD 186 (258)
T ss_dssp HHHHHHHHTTTCC--CEEEEE-------CHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHcCCe--eEEEec-------CHHHHHHHhccCCccEEEecCC
Confidence 4445555568999 999998 8999999999999999987654
No 271
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.08 E-value=96 Score=27.79 Aligned_cols=80 Identities=5% Similarity=-0.008 Sum_probs=48.0
Q ss_pred CCcEEEEEEec--C--CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHH
Q 008904 158 GWGEVIAIFND--D--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (549)
Q Consensus 158 ~W~~v~ii~~~--~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 233 (549)
+=+.|+++..+ + +|.......+.+.+++.|..+.....-. .........+.+...+.+.||+...... ..
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 80 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-----AKDSMVPIRYILETGSADGVIISKIEPN-DP 80 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-----GGGTTHHHHHHHHHTCCSEEEEESCCTT-CH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-----chhHHHHHHHHHHcCCccEEEEecCCCC-cH
Confidence 34678888864 2 5666777888888889998876542211 1222234445566677888887643321 23
Q ss_pred HHHHHHHcCC
Q 008904 234 VFDVAQRLGM 243 (549)
Q Consensus 234 il~~a~~~g~ 243 (549)
.++.+.+.++
T Consensus 81 ~~~~l~~~~i 90 (288)
T 3gv0_A 81 RVRFMTERNM 90 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhCCC
Confidence 4556666564
No 272
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=32.69 E-value=1.1e+02 Score=27.15 Aligned_cols=68 Identities=7% Similarity=-0.006 Sum_probs=45.1
Q ss_pred HHHcCCcEEEEEEec--CCcccchHHHHHHHHhhcCeE-EEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCK-ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 154 l~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
|+.-+-+.|+++..+ ++|.....+.+.+.+++.|.. +..... . .+...-...++.+...+.+.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFST-N----SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECS-S----CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 344455688888865 456667778888889999988 654321 1 2234445667778778889888876
No 273
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=32.62 E-value=39 Score=32.17 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
+.+.++++.+|.+++.+|++....+ ..+.+.+.++ . .+.+.. +.++ .......+.++.+++.++++||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~-~~~f~~-v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--V-AIWHDE-VVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--C-SEEECC-CCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--C-CEEEcc-eecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4577889999999998888654322 2333433333 1 122222 2222 34667788888888899999888766
Q ss_pred hH--HHHHHH
Q 008904 228 SR--TGLMVF 235 (549)
Q Consensus 228 ~~--~~~~il 235 (549)
+. ++.+++
T Consensus 98 Gs~iD~aK~i 107 (364)
T 3iv7_A 98 GSTIGLAKAI 107 (364)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 53 444444
No 274
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=32.54 E-value=59 Score=29.31 Aligned_cols=83 Identities=5% Similarity=-0.102 Sum_probs=48.5
Q ss_pred HHcCCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHH
Q 008904 155 SYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232 (549)
Q Consensus 155 ~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 232 (549)
+.-.=..|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+........
T Consensus 16 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~ 90 (293)
T 2iks_A 16 RAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-E----DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEH 90 (293)
T ss_dssp --CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSCTTC
T ss_pred hcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcH
Confidence 33344578888753 345566677888888888988765321 1 1233345567777777888888865432212
Q ss_pred HHHHHHHHcC
Q 008904 233 MVFDVAQRLG 242 (549)
Q Consensus 233 ~il~~a~~~g 242 (549)
.+++.+.+.+
T Consensus 91 ~~~~~~~~~~ 100 (293)
T 2iks_A 91 PFYQRWANDP 100 (293)
T ss_dssp HHHHTTTTSS
T ss_pred HHHHHHHhCC
Confidence 3444444444
No 275
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=31.96 E-value=1e+02 Score=29.31 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=51.8
Q ss_pred HHHHHHHHcCC---cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC---CeEE
Q 008904 149 AIAEMVSYFGW---GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME---ARVI 222 (549)
Q Consensus 149 ai~~~l~~~~W---~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~vi 222 (549)
-+.++++.++. +++.+|++..... ..+.+.+++.|+.+.....+.+. .+...+.+.++.+++.+ ++.|
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~~~~~~~~~~~~~D~I 113 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDE--PTTVQVDELTAQVKAFNTKLPVSV 113 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSC--CBHHHHHHHHHHHHHHCSSCCSEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCCCCEE
Confidence 36677888763 7787887544322 13566676667766443334444 45667777788887766 8998
Q ss_pred EEEcch--HHHHHHHHH
Q 008904 223 VVHGYS--RTGLMVFDV 237 (549)
Q Consensus 223 il~~~~--~~~~~il~~ 237 (549)
|-.+.+ -++.+++..
T Consensus 114 IavGGGS~iD~AK~iA~ 130 (375)
T 3rf7_A 114 VGLGGGSTMDLAKAVSL 130 (375)
T ss_dssp EEEESHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHH
Confidence 887665 344555533
No 276
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=31.55 E-value=52 Score=27.06 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEE
Q 008904 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (549)
Q Consensus 146 ~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 225 (549)
.++ ...+.++++-+++.++ +|........+.+...+...|+.+... + .++....+++-+ .+.++++++
T Consensus 18 HGQ-~~~W~k~~~~~~IiVv-nD~vA~D~~~k~~lk~A~P~gvk~~i~---s------ve~ai~~~~~~~-~~~~v~il~ 85 (163)
T 3p3v_A 18 HGQ-GQLWVKFLNCNTVIVA-NDAVSEDKIQQSLMKTVIPSSIAIRFF---S------IQKVIDIIHKAS-PAQSIFIVV 85 (163)
T ss_dssp GST-HHHHHHHTTCSEEEEE-CHHHHHCHHHHHHHGGGSCTTSEEEEE---C------HHHHHHHGGGCC-TTCEEEEEE
T ss_pred hhh-hhhhhhhcCCCEEEEE-cccccCCHHHHHHHHhhCCCCceEEEE---E------HHHHHHHHhccC-CCceEEEEE
Confidence 467 8889999999999655 444433345555555555567776542 2 233333443333 456899999
Q ss_pred cchHHHHHHHH
Q 008904 226 GYSRTGLMVFD 236 (549)
Q Consensus 226 ~~~~~~~~il~ 236 (549)
-++.++..+++
T Consensus 86 k~p~d~~~lv~ 96 (163)
T 3p3v_A 86 KDLQDAKLLVE 96 (163)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99988887653
No 277
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.40 E-value=60 Score=29.21 Aligned_cols=79 Identities=5% Similarity=-0.111 Sum_probs=49.3
Q ss_pred CCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHH
Q 008904 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (549)
Q Consensus 158 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il 235 (549)
+-+.|+++..+ +.|.......+.+.+++.|..+..... . .+.......++.+...+.+.||+..... ....+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT-A----EDIVREREAVGQFFERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHH
Confidence 34578888754 345556677888888888988775432 1 1234455677777778888888765433 23344
Q ss_pred HHHHHcC
Q 008904 236 DVAQRLG 242 (549)
Q Consensus 236 ~~a~~~g 242 (549)
+.+.+.+
T Consensus 81 ~~~~~~~ 87 (291)
T 3egc_A 81 RTELPKT 87 (291)
T ss_dssp HHSSCTT
T ss_pred HHhhccC
Confidence 4544444
No 278
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=31.36 E-value=1.4e+02 Score=26.60 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=47.6
Q ss_pred EEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHH
Q 008904 161 EVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDV 237 (549)
Q Consensus 161 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~ 237 (549)
.|+++..+ ++|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+... .......++.
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 77 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS-Q----NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKE 77 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHH
Confidence 57777753 345566677888888888987765421 1 12233345567777778888887543 2333345666
Q ss_pred HHHcCC
Q 008904 238 AQRLGM 243 (549)
Q Consensus 238 a~~~g~ 243 (549)
+.+.|+
T Consensus 78 ~~~~~i 83 (283)
T 2ioy_A 78 ANSKNI 83 (283)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 666664
No 279
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.25 E-value=1.6e+02 Score=22.46 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=40.6
Q ss_pred cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc--hHHHHHHHHH
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDV 237 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~il~~ 237 (549)
.+|. |.+++. .....+...+++.|..+... . +....++.++...+++|++... ..+...++++
T Consensus 7 ~~iL-ivdd~~---~~~~~l~~~l~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (140)
T 3grc_A 7 PRIL-ICEDDP---DIARLLNLMLEKGGFDSDMV---H--------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRA 71 (140)
T ss_dssp SEEE-EECSCH---HHHHHHHHHHHHTTCEEEEE---C--------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCEE-EEcCCH---HHHHHHHHHHHHCCCeEEEE---C--------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 4554 444443 35667777788778765321 1 2345566677778899998754 3456667777
Q ss_pred HHH
Q 008904 238 AQR 240 (549)
Q Consensus 238 a~~ 240 (549)
+++
T Consensus 72 l~~ 74 (140)
T 3grc_A 72 LRR 74 (140)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 280
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.23 E-value=83 Score=28.39 Aligned_cols=78 Identities=3% Similarity=-0.096 Sum_probs=49.2
Q ss_pred cEEEEEEe-------cCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHH
Q 008904 160 GEVIAIFN-------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232 (549)
Q Consensus 160 ~~v~ii~~-------~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 232 (549)
+.|++|.. .++|.....+.+.+.+++.|..+.... .. .....-...++.+...+.+.||+...... .
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~ 81 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTV---SN--NMNDLMDEVYKMIKQRMVDAFILLYSKEN-D 81 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECC---CC--SHHHHHHHHHHHHHTTCCSEEEESCCCTT-C
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEc---CC--CChHHHHHHHHHHHhCCcCEEEEcCcccC-h
Confidence 56888872 345666778888889999998876432 11 11233455677787788888888643321 2
Q ss_pred HHHHHHHHcCC
Q 008904 233 MVFDVAQRLGM 243 (549)
Q Consensus 233 ~il~~a~~~g~ 243 (549)
..++.+.+.++
T Consensus 82 ~~~~~l~~~~i 92 (295)
T 3hcw_A 82 PIKQMLIDESM 92 (295)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 45556666564
No 281
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=31.19 E-value=1.2e+02 Score=27.93 Aligned_cols=79 Identities=5% Similarity=-0.030 Sum_probs=49.0
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcch-HHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYS-RTGLMV 234 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~-~~~~~i 234 (549)
..|+++..+ ++|.......+.+.+++.|+.+..... . .+.......++.+...+ .+.||+.... ......
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~----~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT-E----GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC-T----TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC-C----CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 467888753 345566677888888888987765421 1 12333445667776667 8888886543 333456
Q ss_pred HHHHHHcCC
Q 008904 235 FDVAQRLGM 243 (549)
Q Consensus 235 l~~a~~~g~ 243 (549)
++.+.+.++
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 666666553
No 282
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=30.86 E-value=56 Score=29.03 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceE
Q 008904 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVA 542 (549)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~t 542 (549)
+++.+-.+.+|++ .++..+ .|..+...+..|++||++.+.+
T Consensus 145 ~~iq~~l~~iGI~--v~i~~~-------~~~~~~~~~~~~~~d~~~~~w~ 185 (259)
T 3pam_A 145 LAFQSNLSRLGIH--AEIRTV-------DDSQYQNRLGMFNYDMIIGKLK 185 (259)
T ss_dssp HHHHHHHHTTTCE--EEEEEC-------CHHHHHHHHHHTCCSEEEEEEC
T ss_pred HHHHHHHHHcCCE--EEEEec-------CHHHHHHHHhcCCeeEEEeccC
Confidence 3445555568999 999999 9999999999999999987543
No 283
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=30.85 E-value=1.1e+02 Score=27.09 Aligned_cols=78 Identities=6% Similarity=0.030 Sum_probs=47.9
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~ 237 (549)
+.|+++..+ ++|.......+.+.+++.|..+..... . .+.......++.+...+.+.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS-D----YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC-T----TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC-C----CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 467888753 345566778888888899987654321 1 12334456677777778888877654221 234555
Q ss_pred HHHcCC
Q 008904 238 AQRLGM 243 (549)
Q Consensus 238 a~~~g~ 243 (549)
+.+.++
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 555554
No 284
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=30.46 E-value=2.2e+02 Score=25.76 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=41.4
Q ss_pred HHHHHHHhcCcEEEEcCCCchHH---HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH
Q 008904 82 MGALQFMETDTLAIVGPQSAVMA---HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (549)
Q Consensus 82 ~~~~~l~~~~v~aiiGp~~s~~~---~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~ 156 (549)
..+.+.+..++++++.+.+.... ..+..++...++|+++.... .+. ..-+.....+...+++..++++.+
T Consensus 184 ~~~~~~l~~~~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~~--~v~---~G~l~~~~~~~~~~G~~aa~~a~~ 256 (302)
T 3lkv_A 184 QSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAATS--YVE---RGAIASLGFDYYQIGVQTADYVAA 256 (302)
T ss_dssp HHHHHHHHTTCSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSHH--HHH---TTCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEeCCcchhhHHHHHHHHHhhcCCceeecccc--ccc---CCceEEEecCHHHHHHHHHHHHHH
Confidence 34444556688899888776543 34556778899999974221 111 122344445666666666666443
No 285
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=30.42 E-value=2.9e+02 Score=25.19 Aligned_cols=135 Identities=10% Similarity=0.071 Sum_probs=72.0
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEec-CCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD-AKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d-~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+ ++-.-.+.++-..+-++.-+++|+- ......
T Consensus 39 k~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~- 107 (299)
T 1pg5_A 39 KTISIAFFEPS---TRTYLSFQKAIINL-------GGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGA- 107 (299)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEECC-------CCCHHHHHHHHHHHCSEEEEEESSBTH-
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHh-------CCEEEEeCCCCcccccCCCCHHHHHHHHHHhCCEEEEeCCChhH-
Confidence 36888887654 57788999999984 44544443333 1211112222222333332333332 222333
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~ 178 (549)
+..++...++|+|.-+-++. .. | .+++++++ .++| -.+|+++.+ ..++ .....
T Consensus 108 --~~~la~~~~vPVINaG~g~~-----~H-------P-----tQ~LaDl~Ti~e~~g~l~gl~va~vGD-~~~~-rva~S 166 (299)
T 1pg5_A 108 --SRFASEISDIPVINAGDGKH-----EH-------P-----TQAVIDIYTINKHFNTIDGLVFALLGD-LKYA-RTVNS 166 (299)
T ss_dssp --HHHHHHHCSSCEEEEEETTT-----BC-------H-----HHHHHHHHHHHHHHSCSTTCEEEEEEC-CSSC-HHHHH
T ss_pred --HHHHHHhCCCCEEeCCCCCC-----cC-------c-----HHHHHHHHHHHHHhCCcCCcEEEEECC-CCCC-chHHH
Confidence 34455567899998433221 11 2 36677764 4454 357777763 2233 35677
Q ss_pred HHHHHhhc-CeEEEEE
Q 008904 179 LGDKLAEI-RCKISYK 193 (549)
Q Consensus 179 l~~~~~~~-g~~v~~~ 193 (549)
+...+... |.+|...
T Consensus 167 l~~~~~~~~g~~v~~~ 182 (299)
T 1pg5_A 167 LLRILTRFRPKLVYLI 182 (299)
T ss_dssp HHHHGGGSCCSEEEEE
T ss_pred HHHHHHhCCCCEEEEE
Confidence 77788888 8887664
No 286
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=30.18 E-value=3.3e+02 Score=25.07 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=81.8
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++..-.+.++-..+-++.-+++|+-=.. ...
T Consensus 46 gk~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~--~~~ 113 (315)
T 1pvv_A 46 GKTLAMIFQKPS---TRTRVSFEVAMAHL-------GGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVY--DHK 113 (315)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECS--SHH
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecC--chH
Confidence 346788887654 36788999999984 456666654454443344455555556654555553111 233
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~l 179 (549)
.+..++...++|+|.-+ ++ ... | .+++++++ +++| -.+|+++.+ . ......+
T Consensus 114 ~~~~lA~~~~vPVINa~-~~-----~~H-------P-----tQaLaDl~Ti~e~~g~l~gl~va~vGD--~--~rva~Sl 171 (315)
T 1pvv_A 114 DVEDLAKYATVPVINGL-SD-----FSH-------P-----CQALADYMTIWEKKGTIKGVKVVYVGD--G--NNVAHSL 171 (315)
T ss_dssp HHHHHHHHCSSCEEEEE-CS-----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHHHHH
T ss_pred HHHHHHHhCCCCEEcCC-CC-----CCC-------c-----HHHHHHHHHHHHHhCCcCCcEEEEECC--C--cchHHHH
Confidence 44556667789999832 21 111 2 36677764 4454 357776653 2 4567788
Q ss_pred HHHHhhcCeEEEEEE
Q 008904 180 GDKLAEIRCKISYKS 194 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~ 194 (549)
...+...|.++....
T Consensus 172 ~~~~~~~g~~v~~~~ 186 (315)
T 1pvv_A 172 MIAGTKLGADVVVAT 186 (315)
T ss_dssp HHHHHHTTCEEEEEC
T ss_pred HHHHHHCCCEEEEEC
Confidence 888888898877643
No 287
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=29.95 E-value=3.3e+02 Score=25.00 Aligned_cols=135 Identities=15% Similarity=0.121 Sum_probs=75.5
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecC--CCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDA--KFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~--~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...++ +-.-.+.++-..+-++.-+++|+- ......
T Consensus 42 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~~~~ 111 (310)
T 3csu_A 42 KVIASCFFEAS---TRTRLSFETSMHRL-------GASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGA 111 (310)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHTT-------TCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESSTTH
T ss_pred CEEEEEecCCC---ccHHHHHHHHHHHh-------CCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCChhH
Confidence 35788887654 56788888888874 444444433333 223345555556666664555552 222222
Q ss_pred HHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchH
Q 008904 104 AHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 104 ~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~ 176 (549)
+..++... ++|+|.-+..+. .. | .+++++++ .++| -.+|+++. |..++ ...
T Consensus 112 ---~~~la~~~~~vPVINag~G~~-----~H-------P-----tQaLaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rva 169 (310)
T 3csu_A 112 ---ARLATEFSGNVPVLNAGDGSN-----QH-------P-----TQTLLDLFTIQETQGRLDNLHVAMVG-DLKYG-RTV 169 (310)
T ss_dssp ---HHHHHHHCTTCCEEEEEETTS-----CC-------H-----HHHHHHHHHHHHHHSCSSSCEEEEES-CTTTC-HHH
T ss_pred ---HHHHHHhcCCCCEEcCccCCC-----CC-------c-----hHHHHHHHHHHHHhCCcCCcEEEEEC-CCCCC-chH
Confidence 33444556 799998543221 11 2 36677764 4454 35676664 22223 356
Q ss_pred HHHHHHHhhc-CeEEEEE
Q 008904 177 TALGDKLAEI-RCKISYK 193 (549)
Q Consensus 177 ~~l~~~~~~~-g~~v~~~ 193 (549)
..+...+... |.+|...
T Consensus 170 ~Sl~~~~~~~~g~~v~~~ 187 (310)
T 3csu_A 170 HSLTQALAKFDGNRFYFI 187 (310)
T ss_dssp HHHHHHHHTSSSCEEEEE
T ss_pred HHHHHHHHhCCCCEEEEE
Confidence 7777788888 8887664
No 288
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.68 E-value=1.5e+02 Score=27.16 Aligned_cols=81 Identities=10% Similarity=-0.078 Sum_probs=49.5
Q ss_pred cCCcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHH
Q 008904 157 FGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (549)
Q Consensus 157 ~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~i 234 (549)
-.=..|+++..+ ++|.......+.+.+++.|..+..... . .+.......++.+...+.+.||+...... ...
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~ 134 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-D----NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKI 134 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHH
Confidence 344578888854 446666778888888899988765421 1 12333456677777778888888653211 123
Q ss_pred HHHHHHcCC
Q 008904 235 FDVAQRLGM 243 (549)
Q Consensus 235 l~~a~~~g~ 243 (549)
++.+.+.++
T Consensus 135 ~~~l~~~~i 143 (332)
T 2o20_A 135 RTSLKNSRT 143 (332)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 444545453
No 289
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=29.67 E-value=55 Score=28.36 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=32.9
Q ss_pred HHHHHHHHh-C-CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceE
Q 008904 493 DVFLAAVRL-L-PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVA 542 (549)
Q Consensus 493 dl~~~~~~~-l-~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~t 542 (549)
+++.+-.+. + |++ .++..+ .|..+...+..|++||++.+.+
T Consensus 116 ~~i~~~l~~~i~GI~--v~i~~~-------~~~~~~~~~~~g~~d~~~~~w~ 158 (229)
T 3o6p_A 116 EFVQGSIQDALDGVK--VTVSPV-------PFSVRLDRSNKGDFDAVIGGWS 158 (229)
T ss_dssp HHHHHHHHHHSTTEE--EEEEEE-------CHHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHHHHhCCCcE--EEEEec-------CHHHHHHHhhcCCceEEEeccc
Confidence 344444555 8 999 999999 8999999999999999986543
No 290
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=29.53 E-value=3.4e+02 Score=25.08 Aligned_cols=134 Identities=19% Similarity=0.187 Sum_probs=78.3
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++-.-.+.++-..+.++.-+++|+- ... .
T Consensus 58 gk~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~---~ 124 (325)
T 1vlv_A 58 GMTLAMIFEKRS---TRTRLAFETAFAEE-------GGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYK---Q 124 (325)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSC---H
T ss_pred CCEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCC---h
Confidence 356888887654 47788999999984 455554433333333333445555555554555553 222 2
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~ 178 (549)
..+..++...++|+|.-+ + +... | .+++++++ .++| -.+|+++.+ .. ......
T Consensus 125 ~~~~~lA~~~~vPVINa~--~----~~~H-------P-----tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~rva~S 183 (325)
T 1vlv_A 125 ETVEKLAEYSGVPVYNGL--T----DEFH-------P-----TQALADLMTIEENFGRLKGVKVVFMGD--TR-NNVATS 183 (325)
T ss_dssp HHHHHHHHHHCSCEEESC--C----SSCC-------H-----HHHHHHHHHHHHHHSCSTTCEEEEESC--TT-SHHHHH
T ss_pred HHHHHHHHhCCCCEEeCC--C----CCCC-------c-----HHHHHHHHHHHHHhCCcCCcEEEEECC--CC-cCcHHH
Confidence 334455566689999832 1 1111 2 36677764 4454 357777653 22 356778
Q ss_pred HHHHHhhcCeEEEEE
Q 008904 179 LGDKLAEIRCKISYK 193 (549)
Q Consensus 179 l~~~~~~~g~~v~~~ 193 (549)
+...+...|.++...
T Consensus 184 l~~~~~~~G~~v~~~ 198 (325)
T 1vlv_A 184 LMIACAKMGMNFVAC 198 (325)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 888888889887764
No 291
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=29.17 E-value=26 Score=32.91 Aligned_cols=42 Identities=5% Similarity=-0.074 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 494 VFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 494 l~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
+.+++++. |++ ++++++. -.|.+..++..|.+|++|+++.+.
T Consensus 35 l~~~~~~~-G~~--v~~~~~~---~~g~~~~~~~al~~G~~D~~~~~~ 76 (348)
T 3uif_A 35 FPEELRKQ-GIK--VEWVPAA---MASVGPVINEGFASGKIDFGIYGD 76 (348)
T ss_dssp HHHHHHHT-TEE--EEEEEEC---TTCHHHHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHhc-CCe--EEEEecc---cCCCcHHHHHHHHcCCCCEEecCc
Confidence 44556665 887 8885540 012355699999999999998554
No 292
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=29.11 E-value=1.8e+02 Score=24.37 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=43.1
Q ss_pred cCCcEEEEEEecCC-----cccchHHHHHHHHhh---cCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcc
Q 008904 157 FGWGEVIAIFNDDD-----QGRNGVTALGDKLAE---IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (549)
Q Consensus 157 ~~W~~v~ii~~~~~-----~g~~~~~~l~~~~~~---~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 227 (549)
+.--+++||...|+ .-......+...+++ .|..+.....++. +...+...+++..+ ..+|+||+.+.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~D----d~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPD----EIEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECS----CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCC----CHHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 33346777776443 122345677778887 7888877666663 36677777777654 36888888754
No 293
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=29.08 E-value=2.2e+02 Score=27.22 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=57.4
Q ss_pred HHHcCCcEEEEEEecCCcccchHHHHHHHHhhc------CeEEEEEEccCCCC-CCChhhHHHHHHHHhcCC--C---eE
Q 008904 154 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI------RCKISYKSALPPDQ-SVTETDVRNELVKVRMME--A---RV 221 (549)
Q Consensus 154 l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~------g~~v~~~~~~~~~~-~~~~~~~~~~l~~l~~~~--~---~v 221 (549)
++.++.+++.+|++..... ...+.+.+.+++. |+.+.. ..++... ..+...+....+.+++.+ . +.
T Consensus 31 ~~~~~~~k~liVtd~~v~~-~~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGS-IYTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHH-HHHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHH-HHHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 4667889999998654322 2566777777765 666542 2344321 023456777778887777 6 88
Q ss_pred EEEEcch--HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 222 IVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 222 iil~~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
||-.+.+ -++..++......| -.++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRG---VRYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCC---CCEEEECCc
Confidence 8866554 55666665544444 345555553
No 294
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=28.58 E-value=1.9e+02 Score=27.66 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-CCChhhHHHHHHHHhcCCC---eEEEEEcch
Q 008904 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNELVKVRMMEA---RVIVVHGYS 228 (549)
Q Consensus 153 ~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~---~viil~~~~ 228 (549)
+++.++.+++.+|++...+. ...+.+.+.+++.|+.+.... ++... ..+...+...++.+++.+. +.||-.+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 44455779999998665443 367888888888888765322 23221 0235567777777777665 577766554
Q ss_pred --HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 229 --RTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 229 --~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
-++..++......| -.++-|-+.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 44555554333333 345555444
No 295
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=28.54 E-value=3e+02 Score=24.14 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=46.2
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-------ChHHHHH----HHHHHHhcCcEEE
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-------NGFLSIM----GALQFMETDTLAI 95 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-------~~~~a~~----~~~~l~~~~v~ai 95 (549)
.+|.+|-|.++ ..+-..+.-+++.+. .||.++.+...+... +...+.. .+.++..+++.+|
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~-----~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVA-----APGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHC-----CTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhc-----CCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 46888888765 233345554555443 257777765544321 2222322 2223334589888
Q ss_pred EcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 96 VGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
+=..++.... ..+-+...+|+|..
T Consensus 74 viaCnt~~~l--~~lr~~~~iPvigi 97 (245)
T 3qvl_A 74 VIASFGDPGL--LAARELAQGPVIGI 97 (245)
T ss_dssp EEC-CCCTTH--HHHHHHCSSCEEEH
T ss_pred EEeCCChhHH--HHHHHHcCCCEECc
Confidence 8766665432 44445678888863
No 296
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.19 E-value=1.4e+02 Score=25.44 Aligned_cols=71 Identities=17% Similarity=0.086 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCcEEEEEEecC--CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 224 (549)
...+.+++....-++|++|-.-. +......+.+.+.+++.|..+....... .+..++ .+.+++ ++.|++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~---~~~l~~--ad~I~l 85 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEI---TTKLRK--NDFIYV 85 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHH---HHHHHH--SSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHH---HHHHHh--CCEEEE
Confidence 34455555555568998885221 1123467888999999998765432111 123333 344442 567777
Q ss_pred Ec
Q 008904 225 HG 226 (549)
Q Consensus 225 ~~ 226 (549)
.+
T Consensus 86 ~G 87 (206)
T 3l4e_A 86 TG 87 (206)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 297
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=28.17 E-value=2.7e+02 Score=24.77 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=56.5
Q ss_pred HHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc--
Q 008904 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-- 227 (549)
Q Consensus 150 i~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-- 227 (549)
++++.. -|-.-++++++. .|.....+.+...-+...+.|.....+- + . -++.+.+..+++.|++.+.
T Consensus 69 iA~~~~-~GA~aiSVLTd~-~~F~Gs~~~L~~vr~~v~lPvLrKDFii-d------~--yQI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITTEE-KYFNGSYETLRKIASSVSIPILMSDFIV-K------E--SQIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEECCS-TTTCCCHHHHHHHHTTCSSCEEEESCCC-S------H--HHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeCCC-CCCCCCHHHHHHHHHhcCCCEeeccccc-c------H--HHHHHHHHcCCCeeehHHhhc
Confidence 344443 477888888744 4655667777766566677765543221 1 1 2466667779999988654
Q ss_pred -hHHHHHHHHHHHHcCCC
Q 008904 228 -SRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 228 -~~~~~~il~~a~~~g~~ 244 (549)
..++..++..|.++||.
T Consensus 138 ~~~~l~~l~~~A~~lGl~ 155 (258)
T 4a29_A 138 TERELESLLEYARSYGME 155 (258)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhHH
Confidence 46788999999999986
No 298
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=28.06 E-value=1.1e+02 Score=27.54 Aligned_cols=79 Identities=9% Similarity=-0.054 Sum_probs=47.5
Q ss_pred CcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHH---HHHHHhcCCCeEEEEEcchHHHHH
Q 008904 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRN---ELVKVRMMEARVIVVHGYSRTGLM 233 (549)
Q Consensus 159 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~---~l~~l~~~~~~viil~~~~~~~~~ 233 (549)
-..|+++..+ ++|.....+.+.+.+++.|..+..... .. +...... .++.+...+.+.||+...... ..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~----~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 81 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-CG----ESTPREQALEAVRFLIGRDCDGVVVISHDLH-DE 81 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-CS----SSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-CC----chhhhhhHHHHHHHHHhcCccEEEEecCCCC-HH
Confidence 3578888753 345566778888888889988765321 11 1222344 677777778888888654322 23
Q ss_pred HHHHHHHcCC
Q 008904 234 VFDVAQRLGM 243 (549)
Q Consensus 234 il~~a~~~g~ 243 (549)
.++.+.+.++
T Consensus 82 ~~~~l~~~~i 91 (290)
T 2rgy_A 82 DLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHhhcCC
Confidence 4555555554
No 299
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=27.92 E-value=2.5e+02 Score=25.00 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=53.4
Q ss_pred cEEEEEEecCCcccchHHHHHHH--------Hhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch--
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDK--------LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-- 228 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~--------~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-- 228 (549)
.+|.+-....+...-...-+... ++.. |++|..--. . .....+++.+++.++++|.+.+..
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~---~-----vp~e~iv~aa~e~~~d~VglS~l~t~ 192 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS---Q-----VANEDFIKKAVELEADVLLVSQTVTQ 192 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS---S-----BCHHHHHHHHHHTTCSEEEEECCCCT
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC---C-----CCHHHHHHHHHHcCCCEEEEEeecCC
Confidence 34544444445555566666666 8888 999875321 1 123456777777889999997633
Q ss_pred -----HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 229 -----RTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 229 -----~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
..+..+++.+++.|+...-.+|++..
T Consensus 193 ~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 193 KNVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp TSHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred ccchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 34566777887877643334555543
No 300
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=27.76 E-value=2.3e+02 Score=25.09 Aligned_cols=77 Identities=8% Similarity=-0.020 Sum_probs=47.7
Q ss_pred CcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHH
Q 008904 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (549)
Q Consensus 159 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~ 236 (549)
=..|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+...... ...++
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 81 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-E----SDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQ 81 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHH
Confidence 3578888753 456666778888888889988765431 1 12333455677777788888888654221 13344
Q ss_pred HHHHcC
Q 008904 237 VAQRLG 242 (549)
Q Consensus 237 ~a~~~g 242 (549)
.+. .+
T Consensus 82 ~l~-~~ 86 (285)
T 3c3k_A 82 NII-GA 86 (285)
T ss_dssp HHH-TT
T ss_pred HHh-cC
Confidence 444 44
No 301
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=27.37 E-value=1.7e+02 Score=22.09 Aligned_cols=54 Identities=4% Similarity=-0.049 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHc
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRL 241 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~ 241 (549)
....+...+++.|..+... . +....+..++...+++|+ ........+++.+++.
T Consensus 30 ~~~~l~~~L~~~g~~v~~~---~--------~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 30 LGGEIEKGLNVKGFMADVT---E--------SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEEe---C--------CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 3455555555556544321 1 122334444445566666 3333344555555543
No 302
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=27.03 E-value=1.2e+02 Score=27.41 Aligned_cols=79 Identities=5% Similarity=-0.108 Sum_probs=47.6
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchH-HHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~il~ 236 (549)
.+|+++..+ +.|.......+.+.+++.|..+..... . .+.......++.+...+.+.||+..... .....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-Q----QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 467777753 345555667788888888988765432 1 1233344566777667788888765432 2234566
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.++
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666564
No 303
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=26.94 E-value=3.6e+02 Score=24.56 Aligned_cols=144 Identities=8% Similarity=-0.039 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHhcCcEEE-E-cCCCc-hHHHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHH
Q 008904 76 NGFLSIMGALQFMETDTLAI-V-GPQSA-VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIA 151 (549)
Q Consensus 76 ~~~~a~~~~~~l~~~~v~ai-i-Gp~~s-~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~ 151 (549)
-+..+...+.++++.++-++ + -+.-+ .....+...+... ++.+|.+.+. .+-.. .....-..|..
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~--Gii~p-~~~~~~~~~~~-------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCP--GVINP-GECKIGIMPGH-------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSC--EEEET-TTEEEESSCGG--------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCC--eEecc-cccceeecccc--------
Confidence 34555556667777776663 3 33222 2334678888888 9998876442 22110 01111222321
Q ss_pred HHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCC-ChhhHHHHHHHHhc-CCCeEEEEEcch-
Q 008904 152 EMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV-TETDVRNELVKVRM-MEARVIVVHGYS- 228 (549)
Q Consensus 152 ~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~-~~~~~~~~l~~l~~-~~~~viil~~~~- 228 (549)
.+.--+|++|..... ....+...+.+.|+-+.....+-.. . ...++.+.|+.+.+ -.+++|+++...
T Consensus 149 ----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~--~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~ 218 (305)
T 2fp4_A 149 ----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGD--PFNGTDFTDCLEIFLNDPATEGIILIGEIG 218 (305)
T ss_dssp ----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSCCHHHHHHHHHHCTTCCEEEEEEESS
T ss_pred ----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCC--cCCCCCHHHHHHHHhcCCCCcEEEEEEecC
Confidence 123357999986664 4556667777777766665544433 1 13567778887754 578999998775
Q ss_pred ----HHHHHHHHHHHH
Q 008904 229 ----RTGLMVFDVAQR 240 (549)
Q Consensus 229 ----~~~~~il~~a~~ 240 (549)
.+.+.|++.+.+
T Consensus 219 g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 219 GNAEENAAEFLKQHNS 234 (305)
T ss_dssp SSHHHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHH
Confidence 468889987653
No 304
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=26.84 E-value=24 Score=31.85 Aligned_cols=29 Identities=3% Similarity=-0.105 Sum_probs=24.3
Q ss_pred CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 503 PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 503 ~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
|++ +++... .|+.++..|.+|++|+++.+
T Consensus 37 Gl~--ve~~~~-------~~~~~~~~l~~G~~D~~~~~ 65 (280)
T 1zbm_A 37 WLE--IEHVIE-------DIETLNRKAFNAEYEVTAIS 65 (280)
T ss_dssp SCE--EEEEEC-------CHHHHHHHGGGTCCSEEEEE
T ss_pred Cce--EEEEeC-------CHHHHHHHHHcCCCCEEEEC
Confidence 566 777665 89999999999999999854
No 305
>1ou0_A Precorrin-8X methylmutase related protein; structural genomics, PSI, protein structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: c.23.17.1
Probab=26.38 E-value=98 Score=26.47 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc---CcEEEEc-CCCchHHHHHHHhhhhcCCc
Q 008904 42 VSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET---DTLAIVG-PQSAVMAHVLSHLANELQVP 117 (549)
Q Consensus 42 ~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~~iP 117 (549)
+...+++.|.+++ +| . +... ++...|+-..++++++ +..+||| |..--.+......+...++|
T Consensus 115 Rsaaa~~~~~~~l-------~~-~--I~aI---GNAPTAL~~Lleli~~g~~~PalVIG~PVGFVgaaESK~~L~~~~vP 181 (207)
T 1ou0_A 115 RSAAGIRIAMQDH-------RN-S--VIVI---GNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGLVSSHIE 181 (207)
T ss_dssp HHHHHHHHHHHHC-------SS-E--EEEE---SSCHHHHHHHHHHHHHHTCTTCCEEECCCCSHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHc-------CC-c--EEEE---eCcHHHHHHHHHHHHcCCCCCcEEEEeCCCccCHHHHHHHHhcCCCC
Confidence 3456777777763 34 2 2222 6788899999999976 6888998 54443333333444556999
Q ss_pred EEecc
Q 008904 118 LLSFT 122 (549)
Q Consensus 118 ~Is~~ 122 (549)
+|...
T Consensus 182 ~I~~~ 186 (207)
T 1ou0_A 182 YISVE 186 (207)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 99853
No 306
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=26.30 E-value=45 Score=30.40 Aligned_cols=36 Identities=3% Similarity=0.128 Sum_probs=28.7
Q ss_pred HHHhC-CCCcCEEEEECCCCCCCCCh-HHHHHhHhcCcccEEecceE
Q 008904 498 AVRLL-PYAVPYKFIPYGDGHKNPTY-SELINQITTGVSRILTKKVA 542 (549)
Q Consensus 498 ~~~~l-~~~~~~~~~~~~dg~~~g~~-~gl~~~l~~~~~d~~~~~~t 542 (549)
+.+.+ |++ ++++.. .| ..++..|.+|++|+++++.+
T Consensus 25 ~~~~~~g~~--v~~~~~-------~~~~~~~~~l~~G~~D~~~~~~~ 62 (308)
T 2x26_A 25 LEKRYPESK--ISWVEF-------PAGPQMLEALNVGSIDLGSTGDI 62 (308)
T ss_dssp HHHHCTTSE--EEEEEC-------SSHHHHHHHHHHTSCSEEEECSH
T ss_pred HhHhcCCCc--eEEEEC-------CCcHHHHHHHHCCCCCEEcccCc
Confidence 45556 788 888887 55 89999999999999986543
No 307
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=26.15 E-value=1.5e+02 Score=27.56 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=47.9
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~ 237 (549)
..|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+...... ...++.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N----EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 468888754 445566778888888889987765332 1 12333455677777778888887654322 244556
Q ss_pred HHHcCC
Q 008904 238 AQRLGM 243 (549)
Q Consensus 238 a~~~g~ 243 (549)
+.+.++
T Consensus 141 l~~~~i 146 (348)
T 3bil_A 141 LQKQGM 146 (348)
T ss_dssp HHHC-C
T ss_pred HHhCCC
Confidence 656554
No 308
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=26.08 E-value=2.5e+02 Score=25.15 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEE--
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH-- 225 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~-- 225 (549)
..++.-...-|-..+.++.++. |.....+.+...-+..++.|.....+ . +.+ ++...+..+++.|++.
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~-~f~Gs~~~l~~ir~~v~lPvl~kdfi-i------d~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQR-RFQGSLDDLDAVRASVSIPVLRKDFV-V------QPY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGG-GHHHHHHHHHHHHHHCSSCEEEESCC-C------SHH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEecChh-hcCCCHHHHHHHHHhCCCCEEECccc-c------CHH--HHHHHHHcCCCEEEEecc
Confidence 4466667778899998887444 43344555555444456666543211 1 121 3566677899999884
Q ss_pred -cchHHHHHHHHHHHHcCCC
Q 008904 226 -GYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 226 -~~~~~~~~il~~a~~~g~~ 244 (549)
.+..++..++..++++||.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 3456788889999998874
No 309
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.80 E-value=1.2e+02 Score=27.04 Aligned_cols=78 Identities=3% Similarity=-0.113 Sum_probs=45.7
Q ss_pred cEEEEEEec------CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHH
Q 008904 160 GEVIAIFND------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (549)
Q Consensus 160 ~~v~ii~~~------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 233 (549)
+.|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-S----EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-C----SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-C----CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 356666643 346666778888888888987765321 1 111222456777777788888876532211 3
Q ss_pred HHHHHHHcCC
Q 008904 234 VFDVAQRLGM 243 (549)
Q Consensus 234 il~~a~~~g~ 243 (549)
.++.+.+.++
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 4555555554
No 310
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=25.58 E-value=3.9e+02 Score=24.45 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=77.7
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++..-.+.++-..+.++.-+++|+-=.. ...
T Consensus 39 gk~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~--~~~ 106 (307)
T 2i6u_A 39 PRGVAVIFDKNS---TRTRFSFELGIAQL-------GGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTF--GQE 106 (307)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECS--SHH
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecC--Chh
Confidence 346888887654 46788999999984 455555544333322222333333344433455553111 233
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~l 179 (549)
.+..++...++|+|.-+ + +... | .+++++++ .++| -.+|+++.+ .. ......+
T Consensus 107 ~~~~lA~~~~vPVINa~-~-----~~~H-------P-----tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~rva~Sl 165 (307)
T 2i6u_A 107 RLDAMASVATVPVINAL-S-----DEFH-------P-----CQVLADLQTIAERKGALRGLRLSYFGD--GA-NNMAHSL 165 (307)
T ss_dssp HHHHHHHHCSSCEEESC-C-----SSCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEESC--TT-SHHHHHH
T ss_pred HHHHHHhhCCCCEEcCC-C-----CCcC-------c-----cHHHHHHHHHHHHhCCcCCeEEEEECC--CC-cCcHHHH
Confidence 44556667789999832 1 1111 2 36677764 4454 357777653 22 3567788
Q ss_pred HHHHhhcCeEEEEEE
Q 008904 180 GDKLAEIRCKISYKS 194 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~ 194 (549)
...+...|.++....
T Consensus 166 ~~~~~~~g~~v~~~~ 180 (307)
T 2i6u_A 166 LLGGVTAGIHVTVAA 180 (307)
T ss_dssp HHHHHHTTCEEEEEC
T ss_pred HHHHHHCCCEEEEEC
Confidence 888888898877643
No 311
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=25.38 E-value=27 Score=32.70 Aligned_cols=35 Identities=9% Similarity=0.318 Sum_probs=28.9
Q ss_pred HhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceE
Q 008904 500 RLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVA 542 (549)
Q Consensus 500 ~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~t 542 (549)
+..|++ +++... +.|..++..|.+|++|+++++.+
T Consensus 78 ~~~G~~--Ve~~~~------~~~~~~~~al~~G~~D~~~~~~~ 112 (341)
T 3un6_A 78 NHPKYK--LELVKF------NNWPDLMDALNSGRIDGASTLIE 112 (341)
T ss_dssp SSCSSE--EEEEEC------SSHHHHHHHHHTTSSSEEEEEHH
T ss_pred HHcCCc--EEEEEc------CCHHHHHHHHHcCCCCEEecchH
Confidence 456888 888876 35999999999999999987654
No 312
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=25.23 E-value=3.4e+02 Score=24.62 Aligned_cols=133 Identities=10% Similarity=0.034 Sum_probs=77.7
Q ss_pred CChHHHHHHHHHHHhcCcE-EEEcCC--CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHH
Q 008904 75 FNGFLSIMGALQFMETDTL-AIVGPQ--SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIA 151 (549)
Q Consensus 75 ~~~~~a~~~~~~l~~~~v~-aiiGp~--~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~ 151 (549)
..+..+...+.+.++.++. +++... .......+...+...++.++.+.+. .+-+. .....-+.|..
T Consensus 78 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~--Gii~~-~~~~~~~~~~~-------- 146 (294)
T 2yv1_A 78 VPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTP--GIASP-KVGKLGIIPME-------- 146 (294)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCC--EEEET-TTEEEECCCGG--------
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCc--eeecc-CcceeeecccC--------
Confidence 3455666666677777777 444432 2234567788888889988865432 11110 01111112221
Q ss_pred HHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCC-hhhHHHHHHHHhc-CCCeEEEEEcch
Q 008904 152 EMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVT-ETDVRNELVKVRM-MEARVIVVHGYS 228 (549)
Q Consensus 152 ~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~l~~l~~-~~~~viil~~~~ 228 (549)
.+.--+|++|..... ....+.+.+.+.|+-+.....+-.. .. ..++.+.|+.+.+ -.+++|+++...
T Consensus 147 ----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~~~d~l~~~~~D~~T~~I~l~~E~ 215 (294)
T 2yv1_A 147 ----VLKEGSVGMVSRSGT----LTYEIAHQIKKAGFGVSTCVGIGGD--PIVGLRYKEVLDLFEKDDETEAIVMIGEI 215 (294)
T ss_dssp ----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSSCHHHHHHHHHTCTTCSEEEEEEES
T ss_pred ----CCCCCCEEEEECCHH----HHHHHHHHHHhCCCCeEEEEeeCCC--CCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 123347999986664 4456667777777766665554433 11 3467788888765 578899998774
No 313
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=25.03 E-value=95 Score=25.56 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHHHHHHhc--CcEEEEcCCC--chHHHHHHHhhhhcCCcEEec
Q 008904 81 IMGALQFMET--DTLAIVGPQS--AVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 81 ~~~~~~l~~~--~v~aiiGp~~--s~~~~~va~~~~~~~iP~Is~ 121 (549)
++.+.+++.+ +.+.++|... +.....+..+++.+++|+++.
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEEC
Confidence 5566666654 8899998754 456678899999999999974
No 314
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=25.02 E-value=1.4e+02 Score=29.67 Aligned_cols=116 Identities=9% Similarity=-0.039 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHH-HhcCcEEEEcCCCc-hHHHHHHHhhhhcCCcEEecc
Q 008904 45 IAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQF-METDTLAIVGPQSA-VMAHVLSHLANELQVPLLSFT 122 (549)
Q Consensus 45 ~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l-~~~~v~aiiGp~~s-~~~~~va~~~~~~~iP~Is~~ 122 (549)
.-.+--++.+|+++.+ +.+++..-.-.++..+.+.+.++ -+.+|++||-...+ ..+..+...+..+++|++-+.
T Consensus 29 ~~~~~~~~~l~~~~~l----~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~~l~~l~~PvL~~~ 104 (500)
T 4f2d_A 29 QHAEHVVNALNTEAKL----PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFH 104 (500)
T ss_dssp HHHHHHHHHHHHHTCC----SSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHhccccCC----CeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHHHHHhcCCCEEEEe
Confidence 3345567778888543 34555444444555544444444 34599999986655 455566788888999999864
Q ss_pred cCC-CCCC-CCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEE
Q 008904 123 ALD-PTLS-PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIF 166 (549)
Q Consensus 123 ~~~-~~ls-~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~ 166 (549)
... +.+. +...--+.+...+. .=...+...+.++|-+. -+|+
T Consensus 105 ~q~~~~ip~~~id~d~m~lnqsa-cG~~e~~~~l~r~gi~~-~~v~ 148 (500)
T 4f2d_A 105 TQFNAALPWDSIDMDFMNLNQTA-HGGREFGFIGARMRQQH-AVVT 148 (500)
T ss_dssp CCSCSSCCTTTCCHHHHHHCCHH-HHHHHHHHHHHHTTCCE-EEEE
T ss_pred CCCCCCCCccccchHHHhccccc-cchHHHHHHHHHcCCCe-EEEE
Confidence 321 1121 10000112222111 12345666677777765 4444
No 315
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=24.81 E-value=1.8e+02 Score=25.37 Aligned_cols=54 Identities=4% Similarity=-0.075 Sum_probs=30.4
Q ss_pred CCcEEEEEEecCCcccchHHHHHHHHhhcCe----EEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 158 GWGEVIAIFNDDDQGRNGVTALGDKLAEIRC----KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 158 ~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.-++|+++. .+ .....+.+.+...|. .+.. + .+....++.+.+-..|+++....
T Consensus 136 ~g~~v~v~~-g~----~~~~~l~~~~~~~g~~~~~~~~~---~--------~~~~~~~~~l~~G~vDa~~~~~~ 193 (259)
T 4dz1_A 136 NKYSIGYPR-GM----AYSDLIKNDLEPKGYYSLSKVKL---Y--------PTYNETMADLKNGNLDLAFIEEP 193 (259)
T ss_dssp GGSCEEEET-TS----THHHHHHHHTGGGTSCCGGGCEE---E--------SSHHHHHHHHHHTSCSEEEEEHH
T ss_pred CCCEEEEeC-Cc----HHHHHHHHhcccccccccceeEe---c--------CCHHHHHHHHHcCCCCEEEecHH
Confidence 346787653 22 234555555665553 2211 1 13456678888788888887643
No 316
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=24.64 E-value=1e+02 Score=24.91 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCcCEEEE-ECCCCC--CCCChHHHHHhHhcCcccEEec
Q 008904 492 IDVFLAAVRLLPYAVPYKFI-PYGDGH--KNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~-~~~dg~--~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
++.+++.+...||. ++++ -..-|. ..+.|..|+..+..|++|.++.
T Consensus 24 ~~~l~~~~~~~g~~--v~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv 72 (154)
T 3lhk_A 24 IQLIKSYAEENGWD--IQILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVII 72 (154)
T ss_dssp HHHHHHHHHHTTCC--CEEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCE--EEEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 45677778888998 4333 222344 3457999999999999998764
No 317
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.25 E-value=2e+02 Score=20.62 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch--HHHHHHHHHHHHcC
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 242 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~il~~a~~~g 242 (549)
..+.+...++..|..+... . +....+..++...+++|++.... .....+++..++..
T Consensus 13 ~~~~l~~~l~~~g~~v~~~---~--------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 13 AATVVCEMLTAAGFKVIWL---V--------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCcEEEEe---c--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 5567777777778765432 1 12334555555578899987543 34566777777653
No 318
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=24.14 E-value=2.9e+02 Score=22.44 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=39.9
Q ss_pred cEEEEEEecCCc--c---cchHHHHHHHHhhc-----CeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcc
Q 008904 160 GEVIAIFNDDDQ--G---RNGVTALGDKLAEI-----RCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (549)
Q Consensus 160 ~~v~ii~~~~~~--g---~~~~~~l~~~~~~~-----g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 227 (549)
-+|+||...|.- | ......+.+.+++. |..+.....++. +...+...+++..+ .++|+||..+.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D----d~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD----EVERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS----CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC----CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 367777654321 1 11234556666666 888877666663 36677778877654 46888888754
No 319
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.04 E-value=3.7e+02 Score=23.69 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=55.3
Q ss_pred cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEE-ccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc----hHHHHHH
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKS-ALPPDQSVTETDVRNELVKVRMMEARVIVVHGY----SRTGLMV 234 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~----~~~~~~i 234 (549)
.+|.+.....+...-+..-+...++..|+.|..-- ..| . ...++.++..++++|.+.+. ...+..+
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp------~---e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~ 194 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP------A---EEVLAAVQKEKPIMLTGTALMTTTMYAFKEV 194 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC------S---HHHHHHHHHHCCSEEEEECCCTTTTTHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC------H---HHHHHHHHHcCCCEEEEEeeccCCHHHHHHH
Confidence 46766666666666777888888899999886532 233 2 23455666667899998764 2456778
Q ss_pred HHHHHHcCCCCCCeEEEEeC
Q 008904 235 FDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 235 l~~a~~~g~~~~~~~~i~~~ 254 (549)
++..++.+.. -.++++..
T Consensus 195 i~~l~~~~~~--~~v~vGG~ 212 (258)
T 2i2x_B 195 NDMLLENGIK--IPFACGGG 212 (258)
T ss_dssp HHHHHTTTCC--CCEEEEST
T ss_pred HHHHHhcCCC--CcEEEECc
Confidence 8888776653 33555543
No 320
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=24.00 E-value=2.9e+02 Score=22.81 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=39.4
Q ss_pred EEEEEEecCC-----cccchHHHHHHHHh---hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC-CCeEEEEEcc
Q 008904 161 EVIAIFNDDD-----QGRNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (549)
Q Consensus 161 ~v~ii~~~~~-----~g~~~~~~l~~~~~---~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 227 (549)
+++||...|. .-......+...++ +.|..+ ....++. +...+...+++..+. .+|+||..+.
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~D----d~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPD----ERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECS----CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCC----CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 6777765442 11234456777666 789888 5555552 366777778776653 6888988754
No 321
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=23.89 E-value=2.9e+02 Score=24.57 Aligned_cols=70 Identities=6% Similarity=-0.178 Sum_probs=46.3
Q ss_pred HHHcCCcEEEEEEecC--Cccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 154 VSYFGWGEVIAIFNDD--DQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 154 l~~~~W~~v~ii~~~~--~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
|+.-+-+.|+++..+. .|.. ...+.+.+.+++.|..+..... . .+.......++.+...+.+.||+....
T Consensus 8 L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 8 IRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT-G----GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp ----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4444556888888653 4666 7889999999999988776432 1 123444567777877888888876543
No 322
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.34 E-value=98 Score=27.74 Aligned_cols=77 Identities=8% Similarity=0.053 Sum_probs=42.5
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEE-EccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYK-SALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~ 236 (549)
..|+++..+ ++|.....+.+.+.+++.|..+... .. . .+.......++.+...+.+.||+...... ...++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSG-S----ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC---------------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCC-C----CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 468888753 4566667788888888899877653 21 1 11122234566777778888887654322 23455
Q ss_pred HHHHcC
Q 008904 237 VAQRLG 242 (549)
Q Consensus 237 ~a~~~g 242 (549)
.+.+.+
T Consensus 83 ~l~~~~ 88 (290)
T 3clk_A 83 LLQSSD 88 (290)
T ss_dssp HHHCC-
T ss_pred HHHhCC
Confidence 555444
No 323
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.64 E-value=2.4e+02 Score=20.94 Aligned_cols=69 Identities=10% Similarity=0.137 Sum_probs=41.1
Q ss_pred CcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch--HHHHHHHH
Q 008904 159 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFD 236 (549)
Q Consensus 159 W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~il~ 236 (549)
-.+|.++ +++. .....+...+++.|..+... . +....++.++...+++|++.... .....+++
T Consensus 7 ~~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~ 71 (130)
T 3eod_A 7 GKQILIV-EDEQ---VFRSLLDSWFSSLGATTVLA---A--------DGVDALELLGGFTPDLMICDIAMPRMNGLKLLE 71 (130)
T ss_dssp TCEEEEE-CSCH---HHHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHHTTCCCSEEEECCC-----CHHHHH
T ss_pred CCeEEEE-eCCH---HHHHHHHHHHHhCCceEEEe---C--------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHH
Confidence 3456444 4443 25567777788878765431 1 23456677777788999987543 34556777
Q ss_pred HHHHcC
Q 008904 237 VAQRLG 242 (549)
Q Consensus 237 ~a~~~g 242 (549)
+.++.+
T Consensus 72 ~l~~~~ 77 (130)
T 3eod_A 72 HIRNRG 77 (130)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 777654
No 324
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=22.61 E-value=1.3e+02 Score=25.99 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHhc---CcEEEEc-CCCchHHHHHHHhhhhc--CCcEEec
Q 008904 75 FNGFLSIMGALQFMET---DTLAIVG-PQSAVMAHVLSHLANEL--QVPLLSF 121 (549)
Q Consensus 75 ~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~--~iP~Is~ 121 (549)
++...|+-..++++++ +..+||| |..--.+......+... ++|+|..
T Consensus 145 GNAPTAL~~Lleli~~g~~~PalVIG~PVGFVgaaESKe~L~~~~~~vP~I~~ 197 (219)
T 1f2v_A 145 GNAPTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESKDALAENSYGVPFAIV 197 (219)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEE
T ss_pred eCcHHHHHHHHHHHHcCCCCCCEEEEeCCCccCHHHHHHHHHhCCCCCCEEEE
Confidence 6788899999999976 6788888 44332222222333444 7999985
No 325
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=22.60 E-value=4.8e+02 Score=24.46 Aligned_cols=134 Identities=18% Similarity=0.105 Sum_probs=74.2
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.-.|+.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++-.-.+.++-..+.++.-+++|+- ... .
T Consensus 67 Gk~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~---~ 133 (359)
T 2w37_A 67 GKNIALLFEKSS---TRTRSAFTTASIDL-------GAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFK---Q 133 (359)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSC---H
T ss_pred CCEEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCC---h
Confidence 356888887654 46788999999884 344444433232222222333333333332344442 222 3
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~ 178 (549)
..+..++...++|+|.-+ ++ ... | .+++++++ .++| -.+|+++. |.. ......
T Consensus 134 ~~~~~lA~~s~vPVINa~-~~-----~~H-------P-----tQaLaDl~Ti~E~~g~l~gl~va~vG--D~~-~rva~S 192 (359)
T 2w37_A 134 SDAEILARDSGVPVWNGL-TD-----EWH-------P-----TQMLADFMTVKENFGKLQGLTLTFMG--DGR-NNVANS 192 (359)
T ss_dssp HHHHHHHHHSSSCEEEEE-CS-----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEES--CTT-SHHHHH
T ss_pred HHHHHHHHhCCCCEEcCC-CC-----CCC-------c-----cHHHHHHHHHHHHhCCcCCeEEEEEC--CCc-cchHHH
Confidence 344556666789999842 21 111 2 36667764 4454 35676664 322 356777
Q ss_pred HHHHHhhcCeEEEEE
Q 008904 179 LGDKLAEIRCKISYK 193 (549)
Q Consensus 179 l~~~~~~~g~~v~~~ 193 (549)
+...+...|..|...
T Consensus 193 l~~~~~~lG~~v~~~ 207 (359)
T 2w37_A 193 LLVTGAILGVNIHIV 207 (359)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888889887664
No 326
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=22.40 E-value=3.3e+02 Score=24.07 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
..+++-....|-+.+.++..+. +.......+...-+..++.|.....+- +.+ ++...+..+++.|++...
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~-~f~G~~~~l~~i~~~v~lPvl~kdfI~-------d~~--qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPH-RFGGSLLDLKRVREAVDLPLLRKDFVV-------DPF--MLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCS-SSCCCHHHHHHHHHHCCSCEEEESCCC-------SHH--HHHHHHHTTCSEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEecchh-hhccCHHHHHHHHHhcCCCEEECCcCC-------CHH--HHHHHHHcCCCEEEECcc
Confidence 4566667778999998876444 444455566665556667665433221 111 356677789999998643
Q ss_pred h--HHHHHHHHHHHHcCCC
Q 008904 228 S--RTGLMVFDVAQRLGMM 244 (549)
Q Consensus 228 ~--~~~~~il~~a~~~g~~ 244 (549)
. ..+..++..++++||.
T Consensus 138 ~l~~~l~~l~~~a~~lGl~ 156 (254)
T 1vc4_A 138 LLGELTGAYLEEARRLGLE 156 (254)
T ss_dssp HHGGGHHHHHHHHHHHTCE
T ss_pred chHHHHHHHHHHHHHCCCe
Confidence 2 6778888888888864
No 327
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=22.03 E-value=1.7e+02 Score=26.82 Aligned_cols=78 Identities=10% Similarity=-0.044 Sum_probs=47.3
Q ss_pred CcEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHH
Q 008904 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (549)
Q Consensus 159 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~ 236 (549)
-..|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+....... ..++
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-D----QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-C----SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C----CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHH
Confidence 3578888753 456667778888888889988765321 1 112233456777777778888876533221 3455
Q ss_pred HHHHcC
Q 008904 237 VAQRLG 242 (549)
Q Consensus 237 ~a~~~g 242 (549)
.+.+.+
T Consensus 134 ~l~~~~ 139 (332)
T 2hsg_A 134 ELKKSP 139 (332)
T ss_dssp HHTTSS
T ss_pred HHHhCC
Confidence 554444
No 328
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=21.93 E-value=42 Score=31.17 Aligned_cols=36 Identities=6% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceE
Q 008904 499 VRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVA 542 (549)
Q Consensus 499 ~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~t 542 (549)
.+..|++ ++++.. +.|..++..|.+|++|+++++.+
T Consensus 59 ~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~ 94 (346)
T 3qsl_A 59 FKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFE 94 (346)
T ss_dssp HHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETH
T ss_pred hHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchH
Confidence 4567888 888855 37999999999999999987644
No 329
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=21.89 E-value=1.2e+02 Score=25.25 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHH-HHHHhc--CcEEEEcCCCc--hHHHHHHHhhhhcCCcEEec
Q 008904 82 MGA-LQFMET--DTLAIVGPQSA--VMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 82 ~~~-~~l~~~--~v~aiiGp~~s--~~~~~va~~~~~~~iP~Is~ 121 (549)
+.+ .+++.+ +.+.++|. .. .....+..+++. ++|+++.
T Consensus 25 ~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 25 GKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp HHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred HHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 445 666654 88999997 54 566778899999 9999974
No 330
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=21.80 E-value=2.5e+02 Score=24.32 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=80.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcH
Q 008904 66 LSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 144 (549)
Q Consensus 66 l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~ 144 (549)
..+.+.+ ++-..++..+.+++.. ++.+||.-. ..+..+ -+..++|+|... .+..
T Consensus 39 ~~I~vi~--~~le~av~~a~~~~~~~~~dVIISRG--gta~~L---r~~~~iPVV~I~------------------vs~~ 93 (225)
T 2pju_A 39 ANITPIQ--LGFEKAVTYIRKKLANERCDAIIAAG--SNGAYL---KSRLSVPVILIK------------------PSGY 93 (225)
T ss_dssp CEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHH---HTTCSSCEEEEC------------------CCHH
T ss_pred ceEEEec--CcHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHH---HhhCCCCEEEec------------------CCHH
Confidence 3444544 3456678888887775 699999532 222222 245689999752 2233
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 008904 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (549)
Q Consensus 145 ~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 224 (549)
+..+++...-+ ++ +++++|.-.... ..++.+.+.+ |.++.... + .+..+....++++++.+.++||-
T Consensus 94 Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~~-~-----~~~ee~~~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 94 DVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQRS-Y-----ITEEDARGQINELKANGTEAVVG 160 (225)
T ss_dssp HHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEEE-E-----SSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEEE-e-----CCHHHHHHHHHHHHHCCCCEEEC
Confidence 44555555433 33 588888765432 2344555444 44554432 2 24678899999999999998776
Q ss_pred EcchHHHHHHHHHHHHcCCC
Q 008904 225 HGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 225 ~~~~~~~~~il~~a~~~g~~ 244 (549)
... ..+.|+++||.
T Consensus 161 ~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 161 AGL------ITDLAEEAGMT 174 (225)
T ss_dssp SHH------HHHHHHHTTSE
T ss_pred CHH------HHHHHHHcCCc
Confidence 432 24567788864
No 331
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.72 E-value=2.7e+02 Score=23.53 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=37.6
Q ss_pred EEEEEEecCCc--c---cchHHHHHHHHhhcCeE--EEEEEccCCCCCCChhhHHHHHHHHhcC-CCeEEEEEcc
Q 008904 161 EVIAIFNDDDQ--G---RNGVTALGDKLAEIRCK--ISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (549)
Q Consensus 161 ~v~ii~~~~~~--g---~~~~~~l~~~~~~~g~~--v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 227 (549)
+++||...|.- | ......+.+.+++.|.. +.....++. +...+...++++.+. ++|+||..+.
T Consensus 5 rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~D----d~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 5 RIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPD----EQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEES----CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCC----CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 56666655432 1 23446677778888765 444444442 356677777776553 6788888654
No 332
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=21.69 E-value=1.2e+02 Score=28.50 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-CCChhhHHHHHHHHhcCCC---eEEEEE
Q 008904 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNELVKVRMMEA---RVIVVH 225 (549)
Q Consensus 150 i~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~---~viil~ 225 (549)
+.++++.+ +++.+|++..... ...+.+.+.+ +.| .+... .++... ..+...+...++.+++.+. +.||-.
T Consensus 24 l~~~l~~~--~~~liVtd~~~~~-~~~~~v~~~L-~~g-~~~~~-~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIav 97 (354)
T 1xah_A 24 IGTYLNQF--DQSFLLIDEYVNQ-YFANKFDDIL-SYE-NVHKV-IIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAV 97 (354)
T ss_dssp HHHHHTTC--SCEEEEEEHHHHH-HHHHHHC--------CEEEE-EECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEE
T ss_pred HHHHHHhc--CeEEEEECCcHHH-HHHHHHHHHH-hcC-CeEEE-EECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 44555555 8898888654322 2456666667 666 33221 122110 0245667788888888777 787766
Q ss_pred cch--HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 226 GYS--RTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 226 ~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+ -++..++......| ..++-|-|.
T Consensus 98 GGGsv~D~ak~vA~~~~rg---ip~i~IPTT 125 (354)
T 1xah_A 98 GGGATGDFAGFVAATLLRG---VHFIQVPTT 125 (354)
T ss_dssp ESHHHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred CChHHHHHHHHHHHHhccC---CCEEEECCc
Confidence 554 45666654443323 345555554
No 333
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=21.50 E-value=2.2e+02 Score=25.14 Aligned_cols=63 Identities=8% Similarity=-0.089 Sum_probs=41.7
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
..|+++..+ ++|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+...
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA-W----NNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC-C----CChHHHHHHHHHHHhCCCCEEEEEec
Confidence 578888753 445566777888888888987765321 1 12344456677777778888887654
No 334
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=21.09 E-value=1.5e+02 Score=25.43 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHcCCc------EEEEEEecCCcccchHHHHHHHHhh-c-CeEEEEEE
Q 008904 151 AEMVSYFGWG------EVIAIFNDDDQGRNGVTALGDKLAE-I-RCKISYKS 194 (549)
Q Consensus 151 ~~~l~~~~W~------~v~ii~~~~~~g~~~~~~l~~~~~~-~-g~~v~~~~ 194 (549)
-++|+.-||+ ++.+++.++.......+.+++.+++ . |++|....
T Consensus 84 k~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~ 135 (229)
T 3o6p_A 84 KEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSP 135 (229)
T ss_dssp HHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred HHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3455555553 6777775554445667888899998 8 99887653
No 335
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=21.00 E-value=4.4e+02 Score=23.80 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=46.4
Q ss_pred CcEEEEEEecCCccc----chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHH
Q 008904 159 WGEVIAIFNDDDQGR----NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (549)
Q Consensus 159 W~~v~ii~~~~~~g~----~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~i 234 (549)
-+++.+|+... .|. ...+.+...+++.|+.+.....-. ..+.....+++.+ +.+.||+.+....+..+
T Consensus 8 m~~~~vi~Np~-sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~------~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v 79 (304)
T 3s40_A 8 FEKVLLIVNPK-AGQGDLHTNLTKIVPPLAAAFPDLHILHTKE------QGDATKYCQEFAS-KVDLIIVFGGDGTVFEC 79 (304)
T ss_dssp CSSEEEEECTT-CSSSCHHHHHHHHHHHHHHHCSEEEEEECCS------TTHHHHHHHHHTT-TCSEEEEEECHHHHHHH
T ss_pred CCEEEEEECcc-cCCCchHHHHHHHHHHHHHcCCeEEEEEccC------cchHHHHHHHhhc-CCCEEEEEccchHHHHH
Confidence 45777887443 232 345677778888888776543322 2345556666643 67778777777677777
Q ss_pred HHHHHH
Q 008904 235 FDVAQR 240 (549)
Q Consensus 235 l~~a~~ 240 (549)
+..+..
T Consensus 80 ~~~l~~ 85 (304)
T 3s40_A 80 TNGLAP 85 (304)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 776644
No 336
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=20.82 E-value=3.3e+02 Score=21.93 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=45.2
Q ss_pred ccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC
Q 008904 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME 218 (549)
Q Consensus 139 ~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 218 (549)
..+....-...+.++++.....++.|+. +. ......+...+.+.|+.+... ... ....+-...++..++..
T Consensus 14 ~~~~~~~K~~~L~~ll~~~~~~~~lVF~-~~---~~~~~~l~~~L~~~~~~~~~~---~g~--~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 14 LCEHRKDKYQALCNIYGSITIGQAIIFC-QT---RRNAKWLTVEMIQDGHQVSLL---SGE--LTVEQRASIIQRFRDGK 84 (175)
T ss_dssp ECSSHHHHHHHHHHHHTTSCCSEEEEEC-SC---HHHHHHHHHHHHTTTCCEEEE---CSS--CCHHHHHHHHHHHHTTS
T ss_pred EcCChHhHHHHHHHHHHhCCCCCEEEEE-CC---HHHHHHHHHHHHHcCCcEEEE---eCC--CCHHHHHHHHHHHHcCC
Confidence 3444444567788888888777775554 33 246777888888887765442 211 12344555666666555
Q ss_pred CeEEE
Q 008904 219 ARVIV 223 (549)
Q Consensus 219 ~~vii 223 (549)
.+++|
T Consensus 85 ~~vLv 89 (175)
T 2rb4_A 85 EKVLI 89 (175)
T ss_dssp CSEEE
T ss_pred CeEEE
Confidence 55443
No 337
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.72 E-value=1.8e+02 Score=26.43 Aligned_cols=42 Identities=0% Similarity=-0.092 Sum_probs=28.6
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
+++.|+.......... ..+..++..+.+.+++.+.++|+.-.
T Consensus 204 ~~~yGl~~~~~~~~~~--eps~~~l~~l~~~ik~~~v~~If~e~ 245 (291)
T 1pq4_A 204 ARDYNLVQIPIEVEGQ--EPSAQELKQLIDTAKENNLTMVFGET 245 (291)
T ss_dssp HHHTTCEEEESCBTTB--CCCHHHHHHHHHHHHTTTCCEEEEET
T ss_pred HHHCCCEEeecccCCC--CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4567887665433221 24577888888999999988888753
No 338
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.63 E-value=1.1e+02 Score=27.64 Aligned_cols=80 Identities=9% Similarity=-0.041 Sum_probs=48.9
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
.+|+++..+ ++|.......+.+.+++.|..+.....-.. .+.......++.+...+.+.||+.... ......++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 467888754 445666778888888888988776432110 123344566777777778888876443 32234455
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 655 553
No 339
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=20.58 E-value=3.3e+02 Score=24.74 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=65.5
Q ss_pred EEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcC-cEEEE--cCCCchHHHHH
Q 008904 31 AIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIV--GPQSAVMAHVL 107 (549)
Q Consensus 31 ~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~-v~aii--Gp~~s~~~~~v 107 (549)
.+|-..+ .+-+.+|+.|+.++ +|..+.+...+++..-.+.++-..+-++.- +++|+ .+.. ....
T Consensus 39 ~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~~D~iviR~~~~-~~~~-- 105 (291)
T 3d6n_B 39 LFFSEPS---TRTRLSFEKAAREL-------GIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFV-FFPY-- 105 (291)
T ss_dssp EEESSCC---HHHHHHHHHHHHHT-------TCEEEEEETTTTSCCTTCCHHHHHHHHHHTTCSEEEEEESSC-CCSC--
T ss_pred EEecCCC---ccHHHHHHHHHHHh-------CCeEEEECCccCcccCCCcHHHHHHHHHHhcCCEEEEEcCCh-HHHH--
Confidence 5665543 35566777777763 344444433333322223333333444432 34444 2222 2222
Q ss_pred HH-hhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH---HHcC---CcEEEEEEecCCcccchHHHHH
Q 008904 108 SH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 108 a~-~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l---~~~~---W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
. ++...++|+|.-+-++ ..+-.+++++++ +++| -.+|+++. |-.+......+.
T Consensus 106 -~~la~~~~vPVINAG~g~-----------------~~HPtQaLaDl~Ti~e~~g~l~gl~va~vG--Dl~~~rva~Sl~ 165 (291)
T 3d6n_B 106 -KEIVKSLNLRLVNAGDGT-----------------HQHPSQGLIDFFTIKEHFGEVKDLRVLYVG--DIKHSRVFRSGA 165 (291)
T ss_dssp -HHHHHTCSSEEEEEEETT-----------------TBCHHHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHHHHH
T ss_pred -HHHHHhCCCCEEeCccCC-----------------CcCcHHHHHHHHHHHHHhCCcCCcEEEEEC--CCCCCchHHHHH
Confidence 2 3344567777632221 112246777774 4444 35666654 433345777888
Q ss_pred HHHhhcCeEEEEE
Q 008904 181 DKLAEIRCKISYK 193 (549)
Q Consensus 181 ~~~~~~g~~v~~~ 193 (549)
..+...|.++...
T Consensus 166 ~~~~~~g~~v~~~ 178 (291)
T 3d6n_B 166 PLLNMFGAKIGVC 178 (291)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHCCCEEEEE
Confidence 8888889887654
No 340
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=20.40 E-value=2.5e+02 Score=24.94 Aligned_cols=81 Identities=9% Similarity=0.016 Sum_probs=45.3
Q ss_pred cEEEEEEec--CCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHH
Q 008904 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (549)
Q Consensus 160 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~ 236 (549)
+.|+++..+ ++|.....+.+.+.+++.|..+....... . .+...-...++.+...+.+.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 356777643 34555666777778888887765532101 1 122333455666766778887775432 22234456
Q ss_pred HHHHcCC
Q 008904 237 VAQRLGM 243 (549)
Q Consensus 237 ~a~~~g~ 243 (549)
.+.+.++
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666553
No 341
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.31 E-value=3e+02 Score=21.22 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=40.6
Q ss_pred EEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc--hHHHHHHHHHH
Q 008904 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVA 238 (549)
Q Consensus 161 ~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~il~~a 238 (549)
+| +|.+++. .....+...+++.|..|... . +....+..++...+++||+... ..+...+++.+
T Consensus 16 ~I-Livdd~~---~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l 80 (153)
T 3hv2_A 16 EI-LLVDSQE---VILQRLQQLLSPLPYTLHFA---R--------DATQALQLLASREVDLVISAAHLPQMDGPTLLARI 80 (153)
T ss_dssp EE-EEECSCH---HHHHHHHHHHTTSSCEEEEE---S--------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred eE-EEECCCH---HHHHHHHHHhcccCcEEEEE---C--------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHH
Confidence 45 3444443 35667778888878665431 1 2344566666678899998754 33456677777
Q ss_pred HHcC
Q 008904 239 QRLG 242 (549)
Q Consensus 239 ~~~g 242 (549)
++..
T Consensus 81 ~~~~ 84 (153)
T 3hv2_A 81 HQQY 84 (153)
T ss_dssp HHHC
T ss_pred HhHC
Confidence 6643
No 342
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=20.17 E-value=4.4e+02 Score=24.62 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=61.4
Q ss_pred EccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC
Q 008904 138 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM 217 (549)
Q Consensus 138 r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~ 217 (549)
+..|+....++.+.++++..+-++|.|.++.+. ..++|++++.+.++.++. +.+. ..++...--+
T Consensus 259 mClPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~---~~pe--------~a~ID~~I~~ 323 (362)
T 3zy2_A 259 ICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHR---QEPD--------DMYTSLAIMG 323 (362)
T ss_dssp HHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEEC---CSSC--------CHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEE---eCCc--------hhHHHHHHHH
Confidence 346899999999999999999999977764332 578888888877776543 2221 2344554445
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 218 EARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 218 ~~~viil~~~~~~~~~il~~a~~~g 242 (549)
.++.+|-.|...-...+.++=.-+|
T Consensus 324 ~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 324 RADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred hCCEeecCccccccHHHHHHHHhcC
Confidence 6788888777766666655544445
Done!