Query 008905
Match_columns 549
No_of_seqs 306 out of 1661
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 18:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2164 Predicted E3 ubiquitin 100.0 1.8E-58 4E-63 482.9 15.4 367 21-536 104-475 (513)
2 PLN03208 E3 ubiquitin-protein 99.3 8.1E-12 1.8E-16 119.0 6.7 69 107-175 15-90 (193)
3 KOG0823 Predicted E3 ubiquitin 99.2 8.3E-12 1.8E-16 120.9 4.0 63 108-176 45-107 (230)
4 KOG0317 Predicted E3 ubiquitin 99.1 5.1E-11 1.1E-15 118.6 3.7 54 107-169 236-289 (293)
5 PF15227 zf-C3HC4_4: zinc fing 99.1 9.2E-11 2E-15 85.5 3.5 42 113-159 1-42 (42)
6 KOG0320 Predicted E3 ubiquitin 99.0 1.3E-10 2.7E-15 108.2 2.9 56 109-173 130-187 (187)
7 smart00504 Ubox Modified RING 98.9 8.9E-10 1.9E-14 86.9 4.8 53 110-171 1-53 (63)
8 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.2E-09 2.5E-14 78.4 3.2 38 113-159 1-39 (39)
9 COG5574 PEX10 RING-finger-cont 98.8 2.9E-09 6.2E-14 105.0 2.6 53 108-168 213-266 (271)
10 PF00097 zf-C3HC4: Zinc finger 98.7 9.2E-09 2E-13 74.3 3.6 40 113-159 1-41 (41)
11 PF13920 zf-C3HC4_3: Zinc fing 98.7 8.3E-09 1.8E-13 78.0 3.4 46 110-164 2-48 (50)
12 PF04564 U-box: U-box domain; 98.7 9.3E-09 2E-13 84.1 3.7 56 108-171 2-57 (73)
13 KOG0287 Postreplication repair 98.7 3.2E-09 7E-14 107.2 0.1 59 106-173 19-77 (442)
14 PF13639 zf-RING_2: Ring finge 98.7 8.6E-09 1.9E-13 75.8 2.2 40 112-160 2-44 (44)
15 TIGR00599 rad18 DNA repair pro 98.7 1.3E-08 2.9E-13 107.8 3.9 55 107-170 23-77 (397)
16 PHA02929 N1R/p28-like protein; 98.7 1.7E-08 3.7E-13 100.2 4.3 47 109-164 173-227 (238)
17 PHA02926 zinc finger-like prot 98.6 1.9E-08 4.1E-13 97.1 3.2 55 107-164 167-230 (242)
18 KOG0978 E3 ubiquitin ligase in 98.6 1.2E-08 2.7E-13 113.5 1.2 57 109-173 642-698 (698)
19 PF13445 zf-RING_UBOX: RING-ty 98.5 5E-08 1.1E-12 71.4 2.8 39 113-157 1-43 (43)
20 cd00162 RING RING-finger (Real 98.5 9E-08 1.9E-12 69.2 3.8 43 112-162 1-44 (45)
21 smart00184 RING Ring finger. E 98.5 1.8E-07 4E-12 65.2 3.8 39 113-159 1-39 (39)
22 PF14634 zf-RING_5: zinc-RING 98.4 1.7E-07 3.7E-12 69.0 3.2 41 112-161 1-44 (44)
23 COG5432 RAD18 RING-finger-cont 98.4 1E-07 2.2E-12 94.7 1.9 55 107-170 22-76 (391)
24 TIGR00570 cdk7 CDK-activating 98.4 2.2E-07 4.7E-12 95.0 4.2 58 110-175 3-65 (309)
25 PF12678 zf-rbx1: RING-H2 zinc 98.2 6.9E-07 1.5E-11 73.1 2.7 40 112-160 21-73 (73)
26 PF14835 zf-RING_6: zf-RING of 98.2 3.4E-07 7.3E-12 71.9 -0.1 49 110-169 7-56 (65)
27 KOG2177 Predicted E3 ubiquitin 98.1 1E-06 2.2E-11 88.8 1.6 46 107-161 10-55 (386)
28 COG5243 HRD1 HRD ubiquitin lig 98.0 2.6E-06 5.6E-11 87.5 3.1 63 90-164 270-345 (491)
29 KOG2879 Predicted E3 ubiquitin 98.0 3.1E-06 6.7E-11 84.1 3.4 50 108-164 237-287 (298)
30 KOG0311 Predicted E3 ubiquitin 98.0 7.8E-07 1.7E-11 91.1 -1.8 49 108-164 41-90 (381)
31 KOG4172 Predicted E3 ubiquitin 97.8 5.8E-06 1.3E-10 62.4 0.2 46 111-164 8-54 (62)
32 KOG0824 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 79.9 2.5 51 109-167 6-56 (324)
33 KOG0802 E3 ubiquitin ligase [P 97.7 1.5E-05 3.2E-10 89.2 2.3 50 109-167 290-344 (543)
34 COG5540 RING-finger-containing 97.7 3.5E-05 7.7E-10 77.5 4.2 50 107-164 320-372 (374)
35 PF11789 zf-Nse: Zinc-finger o 97.6 2.6E-05 5.6E-10 60.7 2.1 43 109-158 10-53 (57)
36 PF12861 zf-Apc11: Anaphase-pr 97.6 3.5E-05 7.6E-10 64.3 2.8 35 125-165 49-83 (85)
37 KOG4628 Predicted E3 ubiquitin 97.5 4E-05 8.6E-10 79.9 2.3 44 112-163 231-277 (348)
38 KOG2660 Locus-specific chromos 97.5 3.2E-05 6.9E-10 79.1 0.5 50 109-167 14-64 (331)
39 KOG4159 Predicted E3 ubiquitin 97.4 6.2E-05 1.4E-09 80.2 2.3 49 108-165 82-130 (398)
40 COG5222 Uncharacterized conser 97.3 0.00012 2.7E-09 73.4 2.2 80 71-161 225-318 (427)
41 COG5152 Uncharacterized conser 97.2 0.00012 2.6E-09 69.6 1.1 45 110-163 196-240 (259)
42 KOG1002 Nucleotide excision re 97.1 0.00024 5.1E-09 76.3 1.9 56 107-166 533-588 (791)
43 KOG4692 Predicted E3 ubiquitin 97.1 0.0003 6.4E-09 72.3 2.5 50 107-165 419-468 (489)
44 KOG1785 Tyrosine kinase negati 97.0 0.00041 9E-09 72.2 3.1 57 110-175 369-425 (563)
45 KOG1813 Predicted E3 ubiquitin 97.0 0.00024 5.2E-09 71.6 0.9 46 110-164 241-286 (313)
46 KOG3039 Uncharacterized conser 96.9 0.00073 1.6E-08 66.4 3.8 54 109-171 220-277 (303)
47 KOG0828 Predicted E3 ubiquitin 96.8 0.00067 1.4E-08 72.5 2.2 48 109-164 570-634 (636)
48 KOG0827 Predicted E3 ubiquitin 96.7 0.00071 1.5E-08 70.4 1.8 54 110-169 4-61 (465)
49 KOG4265 Predicted E3 ubiquitin 96.7 0.0011 2.5E-08 68.6 3.2 48 108-164 288-336 (349)
50 KOG0297 TNF receptor-associate 96.7 0.00081 1.8E-08 72.3 1.9 54 108-170 19-73 (391)
51 KOG0804 Cytoplasmic Zn-finger 96.5 0.00089 1.9E-08 71.0 1.0 45 109-164 174-222 (493)
52 KOG4275 Predicted E3 ubiquitin 96.5 0.00074 1.6E-08 67.9 0.2 42 110-164 300-342 (350)
53 KOG1001 Helicase-like transcri 96.5 0.00077 1.7E-08 76.8 0.3 52 111-170 455-506 (674)
54 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.003 6.4E-08 64.3 4.4 53 108-170 111-167 (260)
55 KOG1645 RING-finger-containing 96.4 0.001 2.2E-08 69.8 0.9 58 109-173 3-65 (463)
56 KOG0826 Predicted E3 ubiquitin 96.4 0.001 2.2E-08 68.1 0.8 54 106-168 296-350 (357)
57 KOG1571 Predicted E3 ubiquitin 96.3 0.002 4.4E-08 66.9 2.3 45 108-164 303-347 (355)
58 KOG1039 Predicted E3 ubiquitin 96.3 0.0023 5E-08 67.1 2.7 54 108-163 159-220 (344)
59 PF11793 FANCL_C: FANCL C-term 96.2 0.0015 3.2E-08 53.1 0.2 55 110-164 2-66 (70)
60 COG5219 Uncharacterized conser 95.8 0.0031 6.7E-08 72.0 0.6 49 109-164 1468-1523(1525)
61 smart00744 RINGv The RING-vari 95.5 0.016 3.5E-07 43.6 3.5 42 112-160 1-49 (49)
62 KOG0825 PHD Zn-finger protein 95.5 0.0029 6.2E-08 71.0 -0.9 49 109-166 122-173 (1134)
63 PF07800 DUF1644: Protein of u 95.2 0.026 5.6E-07 52.5 4.4 35 109-143 1-48 (162)
64 KOG3800 Predicted E3 ubiquitin 94.9 0.019 4.2E-07 58.1 2.9 54 112-173 2-60 (300)
65 KOG4739 Uncharacterized protei 94.8 0.0078 1.7E-07 59.6 0.1 43 111-164 4-48 (233)
66 KOG1734 Predicted RING-contain 94.7 0.0082 1.8E-07 60.0 -0.1 55 109-170 223-287 (328)
67 KOG2817 Predicted E3 ubiquitin 94.2 0.029 6.2E-07 59.2 2.6 56 108-169 332-390 (394)
68 KOG1814 Predicted E3 ubiquitin 93.9 0.031 6.6E-07 59.1 1.9 51 109-160 183-236 (445)
69 PF14447 Prok-RING_4: Prokaryo 93.7 0.035 7.5E-07 42.6 1.5 47 110-167 7-53 (55)
70 KOG4362 Transcriptional regula 93.5 0.014 3.1E-07 65.7 -1.3 62 102-169 13-74 (684)
71 KOG4367 Predicted Zn-finger pr 93.4 0.043 9.2E-07 58.2 2.1 36 108-143 2-37 (699)
72 KOG4185 Predicted E3 ubiquitin 93.3 0.053 1.1E-06 56.0 2.5 46 110-163 3-54 (296)
73 PF05290 Baculo_IE-1: Baculovi 93.2 0.088 1.9E-06 47.6 3.5 53 108-166 78-134 (140)
74 PF14570 zf-RING_4: RING/Ubox 93.2 0.059 1.3E-06 40.3 1.9 43 113-163 1-47 (48)
75 COG5194 APC11 Component of SCF 93.0 0.093 2E-06 43.2 3.0 46 110-164 31-81 (88)
76 KOG1493 Anaphase-promoting com 93.0 0.049 1.1E-06 44.4 1.3 32 127-164 50-81 (84)
77 COG5175 MOT2 Transcriptional r 92.8 0.093 2E-06 54.1 3.4 59 107-173 11-73 (480)
78 KOG3039 Uncharacterized conser 92.7 0.085 1.8E-06 52.3 2.8 35 110-144 43-77 (303)
79 COG5220 TFB3 Cdk activating ki 92.4 0.044 9.5E-07 54.0 0.4 58 109-174 9-74 (314)
80 COG5236 Uncharacterized conser 92.1 0.1 2.2E-06 54.1 2.6 48 108-162 59-106 (493)
81 KOG3002 Zn finger protein [Gen 90.9 0.16 3.4E-06 52.7 2.6 44 109-164 47-91 (299)
82 PF10377 ATG11: Autophagy-rela 90.9 0.58 1.3E-05 42.6 6.0 64 431-506 62-127 (129)
83 KOG2932 E3 ubiquitin ligase in 90.8 0.082 1.8E-06 54.0 0.4 60 94-164 71-134 (389)
84 KOG3161 Predicted E3 ubiquitin 89.9 0.12 2.7E-06 57.3 0.9 32 111-142 12-47 (861)
85 KOG1941 Acetylcholine receptor 89.2 0.15 3.2E-06 53.7 0.8 46 109-161 364-413 (518)
86 PHA03096 p28-like protein; Pro 88.8 0.23 5.1E-06 51.1 1.9 35 111-145 179-221 (284)
87 PF10367 Vps39_2: Vacuolar sor 87.7 0.23 5E-06 42.8 1.0 31 108-138 76-108 (109)
88 COG5109 Uncharacterized conser 87.4 0.32 7E-06 49.9 1.9 54 109-168 335-391 (396)
89 KOG4445 Uncharacterized conser 87.3 0.094 2E-06 53.3 -2.0 56 109-164 114-186 (368)
90 KOG1815 Predicted E3 ubiquitin 87.3 0.59 1.3E-05 51.3 4.0 63 108-171 68-133 (444)
91 KOG0298 DEAD box-containing he 86.6 0.18 4E-06 60.2 -0.4 44 109-161 1152-1196(1394)
92 KOG2930 SCF ubiquitin ligase, 86.3 0.49 1.1E-05 40.9 2.1 26 127-161 80-105 (114)
93 KOG1812 Predicted E3 ubiquitin 85.6 0.41 9E-06 51.5 1.7 57 110-169 146-208 (384)
94 KOG1952 Transcription factor N 85.6 1.4 3E-05 50.9 5.8 57 105-163 186-246 (950)
95 KOG3579 Predicted E3 ubiquitin 85.4 0.45 9.7E-06 48.2 1.7 37 109-145 267-307 (352)
96 PF02891 zf-MIZ: MIZ/SP-RING z 85.1 1.1 2.3E-05 33.9 3.3 48 110-162 2-50 (50)
97 KOG1428 Inhibitor of type V ad 84.4 0.53 1.1E-05 56.7 1.9 61 109-169 3485-3549(3738)
98 KOG0825 PHD Zn-finger protein 83.9 0.63 1.4E-05 53.0 2.2 51 110-163 96-153 (1134)
99 KOG3970 Predicted E3 ubiquitin 82.9 1.2 2.6E-05 43.7 3.4 56 108-164 48-105 (299)
100 PF03854 zf-P11: P-11 zinc fin 81.2 0.62 1.3E-05 34.7 0.6 36 121-165 11-47 (50)
101 KOG3113 Uncharacterized conser 79.3 1.9 4.1E-05 43.2 3.4 49 109-168 110-162 (293)
102 PF10272 Tmpp129: Putative tra 78.5 1.4 3E-05 46.8 2.4 40 129-168 312-355 (358)
103 PF05883 Baculo_RING: Baculovi 77.6 0.98 2.1E-05 41.2 0.8 33 110-142 26-67 (134)
104 KOG2114 Vacuolar assembly/sort 77.4 1.4 3E-05 50.9 2.1 40 110-161 840-880 (933)
105 PHA02825 LAP/PHD finger-like p 77.1 2.9 6.2E-05 39.2 3.7 49 107-163 5-58 (162)
106 KOG2034 Vacuolar sorting prote 76.6 1.3 2.9E-05 51.3 1.7 36 109-144 816-853 (911)
107 KOG1100 Predicted E3 ubiquitin 74.1 1.2 2.6E-05 43.9 0.5 39 113-164 161-200 (207)
108 PF07191 zinc-ribbons_6: zinc- 71.4 0.22 4.8E-06 40.2 -4.3 41 110-164 1-41 (70)
109 PF08746 zf-RING-like: RING-li 71.3 4.3 9.2E-05 29.7 2.7 40 113-159 1-43 (43)
110 KOG1940 Zn-finger protein [Gen 70.6 2.4 5.2E-05 43.4 1.7 44 109-161 157-204 (276)
111 PHA02862 5L protein; Provision 68.5 5.2 0.00011 36.9 3.2 46 111-164 3-53 (156)
112 PF10571 UPF0547: Uncharacteri 67.3 2.8 6E-05 27.4 0.9 21 112-132 2-24 (26)
113 PF12906 RINGv: RING-variant d 64.8 4 8.7E-05 30.3 1.5 40 113-159 1-47 (47)
114 COG5183 SSM4 Protein involved 63.5 5.6 0.00012 45.9 2.9 53 109-168 11-70 (1175)
115 KOG3899 Uncharacterized conser 63.3 5.5 0.00012 40.7 2.6 42 128-169 325-370 (381)
116 KOG3268 Predicted E3 ubiquitin 62.4 5.4 0.00012 38.0 2.2 57 108-165 163-229 (234)
117 KOG3842 Adaptor protein Pellin 61.8 7.2 0.00016 40.3 3.1 56 109-165 340-415 (429)
118 TIGR01562 FdhE formate dehydro 61.6 1.9 4.2E-05 44.9 -1.0 44 110-162 184-233 (305)
119 KOG2979 Protein involved in DN 58.0 6.5 0.00014 39.7 2.0 46 107-159 173-219 (262)
120 KOG1729 FYVE finger containing 54.9 2.8 6E-05 43.3 -1.2 59 105-165 163-226 (288)
121 PF04216 FdhE: Protein involve 52.4 1.9 4.1E-05 44.5 -2.9 44 110-162 172-220 (290)
122 KOG2068 MOT2 transcription fac 51.6 18 0.0004 37.8 4.1 46 110-164 249-298 (327)
123 PRK03564 formate dehydrogenase 48.9 5.8 0.00013 41.4 0.0 44 109-161 186-234 (309)
124 smart00064 FYVE Protein presen 47.6 15 0.00032 29.0 2.2 35 109-143 9-47 (68)
125 PF10497 zf-4CXXC_R1: Zinc-fin 47.5 14 0.0003 32.4 2.2 56 109-164 6-72 (105)
126 KOG3799 Rab3 effector RIM1 and 45.7 14 0.00031 33.6 2.0 35 105-143 60-94 (169)
127 KOG2231 Predicted E3 ubiquitin 43.7 18 0.00039 41.6 2.8 50 112-164 2-52 (669)
128 COG5627 MMS21 DNA repair prote 42.9 13 0.00029 36.9 1.5 43 109-158 188-231 (275)
129 PF04710 Pellino: Pellino; In 42.5 8.3 0.00018 41.3 0.0 56 110-165 328-402 (416)
130 COG0068 HypF Hydrogenase matur 42.2 13 0.00028 42.7 1.5 55 107-162 98-182 (750)
131 KOG1812 Predicted E3 ubiquitin 42.1 12 0.00026 40.4 1.1 34 110-143 306-344 (384)
132 KOG2169 Zn-finger transcriptio 40.7 17 0.00037 41.9 2.2 55 110-169 306-361 (636)
133 cd00065 FYVE FYVE domain; Zinc 39.4 19 0.00041 27.2 1.6 33 111-143 3-39 (57)
134 KOG0289 mRNA splicing factor [ 38.1 30 0.00066 37.5 3.3 54 112-174 2-56 (506)
135 PF01363 FYVE: FYVE zinc finge 37.7 7.5 0.00016 30.8 -1.0 31 109-139 8-42 (69)
136 PF05605 zf-Di19: Drought indu 37.4 18 0.0004 27.4 1.2 12 110-121 2-13 (54)
137 COG3813 Uncharacterized protei 36.0 23 0.00051 28.8 1.6 36 124-170 23-58 (84)
138 KOG1356 Putative transcription 36.0 13 0.00028 43.3 0.3 32 110-141 229-262 (889)
139 PF06906 DUF1272: Protein of u 35.7 33 0.00071 26.6 2.3 46 111-167 6-55 (57)
140 KOG4718 Non-SMC (structural ma 35.3 19 0.00042 35.3 1.2 45 110-163 181-226 (235)
141 KOG3451 Uncharacterized conser 35.1 64 0.0014 26.0 3.9 37 494-530 27-64 (71)
142 KOG1842 FYVE finger-containing 32.6 19 0.00041 39.1 0.8 32 107-138 177-212 (505)
143 PF04710 Pellino: Pellino; In 32.1 15 0.00033 39.3 0.0 50 107-162 274-337 (416)
144 COG3058 FdhE Uncharacterized p 32.0 29 0.00063 35.6 1.9 43 110-161 185-233 (308)
145 KOG4185 Predicted E3 ubiquitin 31.4 9.1 0.0002 39.4 -1.8 44 111-162 208-265 (296)
146 PF15616 TerY-C: TerY-C metal 30.5 29 0.00062 31.8 1.5 41 109-164 76-116 (131)
147 PF12660 zf-TFIIIC: Putative z 30.4 4.6 9.9E-05 35.0 -3.5 47 111-163 15-65 (99)
148 KOG2789 Putative Zn-finger pro 30.4 23 0.00051 37.8 1.0 34 110-143 74-109 (482)
149 KOG0883 Cyclophilin type, U bo 30.2 84 0.0018 33.8 5.0 75 110-193 40-114 (518)
150 KOG0801 Predicted E3 ubiquitin 29.8 17 0.00037 34.2 -0.1 27 107-133 174-203 (205)
151 KOG3842 Adaptor protein Pellin 29.2 30 0.00064 36.0 1.5 47 109-161 289-349 (429)
152 KOG1818 Membrane trafficking a 29.0 15 0.00033 41.8 -0.7 65 88-163 153-221 (634)
153 KOG0309 Conserved WD40 repeat- 28.8 32 0.0007 39.8 1.8 21 125-145 1045-1065(1081)
154 COG4647 AcxC Acetone carboxyla 27.7 30 0.00065 31.4 1.1 38 94-135 45-82 (165)
155 PF06844 DUF1244: Protein of u 27.2 38 0.00083 27.1 1.5 13 131-143 11-23 (68)
156 PF10235 Cript: Microtubule-as 26.4 37 0.00079 29.0 1.3 36 110-163 44-79 (90)
157 TIGR00143 hypF [NiFe] hydrogen 26.0 36 0.00078 39.8 1.7 56 107-163 65-150 (711)
158 PRK04023 DNA polymerase II lar 25.7 45 0.00098 40.0 2.3 55 109-174 625-684 (1121)
159 KOG1829 Uncharacterized conser 25.3 27 0.00058 39.6 0.4 40 109-160 510-557 (580)
160 KOG3726 Uncharacterized conser 23.3 45 0.00098 38.2 1.7 39 111-161 655-697 (717)
161 KOG0827 Predicted E3 ubiquitin 23.1 7.9 0.00017 41.2 -3.9 49 110-167 196-248 (465)
162 KOG1819 FYVE finger-containing 23.1 24 0.00053 38.7 -0.4 28 109-136 900-931 (990)
163 TIGR03642 cas_csx13 CRISPR-ass 22.7 64 0.0014 29.2 2.3 58 490-549 45-102 (124)
164 PF10504 DUF2452: Protein of u 22.4 62 0.0013 30.5 2.1 34 430-472 93-128 (159)
165 PF15348 GEMIN8: Gemini of Caj 22.0 1E+02 0.0022 30.5 3.7 34 503-536 97-131 (209)
166 PRK10597 DNA damage-inducible 21.6 1.4E+02 0.003 25.0 3.9 29 502-530 2-32 (81)
167 PTZ00303 phosphatidylinositol 21.0 45 0.00098 38.8 1.1 32 111-142 461-501 (1374)
168 TIGR00622 ssl1 transcription f 20.4 1E+02 0.0022 27.4 3.0 41 111-160 56-110 (112)
169 KOG0314 Predicted E3 ubiquitin 20.3 28 0.0006 38.2 -0.7 49 104-162 213-264 (448)
No 1
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-58 Score=482.85 Aligned_cols=367 Identities=35% Similarity=0.567 Sum_probs=236.1
Q ss_pred CCCCCccccCccccccCcccCCCCCCCCCCCCCCccccCCCCCCCcccccccCcEEEeCCCCCCCCCCCCcCcCCcchhh
Q 008905 21 GSSGRRAQTISGNHLLNFQYDPISRPQYRMPPPPARRQRKIRPYNKDLFLQANYKFVVLDTGDHAPESMDPDKMLQWEDI 100 (549)
Q Consensus 21 ~~~grK~q~~~~nhLlnf~~~~~~~~~~~~~~~~~r~~~~~~~~~k~~fl~an~~Fvv~~~~dy~~~~~dpd~~v~w~~i 100 (549)
...|+++|+ |+||||||+|.+++ +.++... ++++.+..+.+.. +|++|||+|||+ .|+|..+..|||.+++|++|
T Consensus 104 ~e~~~a~~v-s~nhllnf~~~~~~-~~~q~~~-p~~~~~~~~~~~q-~f~~any~fvv~-~gd~~~qn~dpD~p~~~e~i 178 (513)
T KOG2164|consen 104 PEVNLANQV-SLNHLLNFQYAPIE-NSHQSSS-PPRRNRRRDEREQ-TFLNANYRFVVD-EGDYVLQNTDPDAPVDWEDI 178 (513)
T ss_pred hhhhhhhhh-hhhhhhheeecccc-hhhccCC-Cccccccccccch-hhhccchheeec-ccchhhhccCCccccchHHh
Confidence 344578887 99999999999987 4433332 2233322222222 999999999999 99999999999999999999
Q ss_pred hhhhcCCCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeecccccC
Q 008905 101 ICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHA 180 (549)
Q Consensus 101 ~~v~~~~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~~~~~~~~ 180 (549)
.++...+ ...|||||+++..|.+|.|||+||++||++||..+. ..+++.||+|+..|..++|.+|++++.+...
T Consensus 179 ~qv~~~t--~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~----~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke 252 (513)
T KOG2164|consen 179 FQVYGST--DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA----IKGPCSCPICRSTITLKDLLPVFIEDDQKKE 252 (513)
T ss_pred hhhhcCc--CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc----ccCCccCCchhhhccccceeeeeeccccccH
Confidence 9988776 899999999999999999999999999999999862 2357999999999999999999998763211
Q ss_pred CCCceEEEEeecCCCCccccccCCCCCCCCCCCCccccCCceeecccchHHHHHHHhhhHHHHHhhcCcchhccccc---
Q 008905 181 VGDTIEFMLLIREKDSFVPSRKNKQESTTGSIDETYDPFSKFTFTSDVDLSVRKAMSDLDGWLAKADSGLVDDLEKL--- 257 (549)
Q Consensus 181 ~g~~v~l~L~~R~~~s~~p~~~~~~~~~~~~~~~~~~~Fskf~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~e~~--- 257 (549)
.++++.++.| +....... ..+.......|+ .+...+++.+... +...+.. ++...
T Consensus 253 -----~l~~~~~~ng-~~~~~r~F-------~~d~~r~~p~fl--~dl~~~a~~~i~~------~~~~~~l-~i~~~~~i 310 (513)
T KOG2164|consen 253 -----ELKLHQDPNG-IPDYNRRF-------SGDPARFVPDFL--MDLPTYARINIRN------MFNNHIL-TIVDQVCI 310 (513)
T ss_pred -----HHHHHhcccC-CCccccce-------ecCcccccHHHH--HhHHHHHHHHHHH------hhcccce-eehhhHhH
Confidence 1556666655 11111110 000000011121 1111122222111 0000100 01000
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhhcCCCcccCCCCCCCCcCCcccccccCCCCcccCCCCcchhHHHHHhhhhccCCCCC
Q 008905 258 --PYVCAAMEQLEQRKKYWNERRASGSDKASNNADGQTGFHGLQSTKIASNPSHLLNTLSPDISEQNQKLTKLTLNKPDS 335 (549)
Q Consensus 258 --~~i~~a~~~l~~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (549)
.|+.+++..+..++ . .+.. .+ +....+++.++++..
T Consensus 311 ~~v~i~~~~~~~~~~~-------------------~-----~~q~----~~--~~is~lde~~~~~l~------------ 348 (513)
T KOG2164|consen 311 AAVFICQYLSFLLPRR-------------------M-----VPQA----IK--GRISFLDECTNDQLI------------ 348 (513)
T ss_pred HHHHHHHHhcccchhh-------------------h-----cchh----hc--CccCchhhhcchhhh------------
Confidence 01111111000000 0 0000 00 000000000110000
Q ss_pred CCCCCCCCccCCCCcccccccCCccchhhhhhcccccccCCcchhhhhhhccccccCCcccccccccccccccCcccccc
Q 008905 336 GSASGQNSALGELSDCDETSLSSSYDESKSMQANETSLSSSYDESKSLQANETSLSSSYDESKSMQANETSLSSSYDESK 415 (549)
Q Consensus 336 ~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 415 (549)
+.+.+. ... +. ..+...+-+ .
T Consensus 349 ---------ls~~s~----------------------~dn---e~------n~s~~~~~~-------------------~ 369 (513)
T KOG2164|consen 349 ---------LSEMSR----------------------IDN---EY------NASRGLGRD-------------------D 369 (513)
T ss_pred ---------hhhhhh----------------------hhh---hh------hhhhccccc-------------------c
Confidence 000000 000 00 000001100 0
Q ss_pred cccccCCCCccCCCCCceEEEecCCCCceeechhcHHHHHHhhCCCCCCCccceeeEEEEEeeccCHHHHhhhccccccC
Q 008905 416 SLQANFTGSTEIKDKDSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFS 495 (549)
Q Consensus 416 ~~~~~~~~~~~~~~~~~yyFYQa~dgq~ifLhPLdiKiL~~~fGsy~~~P~~I~~kV~eie~~~~~e~~Rkr~kyLsHLP 495 (549)
++ .....++|||||..|||||||||||||||+++| +|+.| +.|.++|++||+ |+|++|+|||||+|||
T Consensus 370 dl--------~~~~~~~y~fyq~~~~~~i~L~pldvk~L~~~~-~yd~f-~~i~~~i~~m~~--~~e~~rrr~~~i~hlp 437 (513)
T KOG2164|consen 370 DL--------LSVSGDAYYFYQSVDGQHIYLHPLDVKILLACY-SYDLF-DEIEAQIENMEQ--VDEELRRRFKYIGHLP 437 (513)
T ss_pred cc--------cCccccceeeecccccceeeecccchhHhhhhh-hhhhH-HHHHHHHHHHHH--HhHHHHhhhhheeecc
Confidence 00 012238899999999999999999999999999 99999 999999999999 9999999999999999
Q ss_pred CCceEEEEEecCCCCCChhhHhhhHHHHHHHHHHHHHHHhh
Q 008905 496 LTTTFQLCEIDLTEALPPDALSPFIDEIRKREKQRKQLANK 536 (549)
Q Consensus 496 l~~~~~f~EiDl~~~V~~e~L~~F~~eL~kR~k~R~~k~r~ 536 (549)
+| +++||||..+|++++|..|+.||++|+|+|++|+++
T Consensus 438 ~~---t~~~~d~~ki~p~~i~~~f~~ei~~r~k~r~~r~~~ 475 (513)
T KOG2164|consen 438 LG---TVLECDWQKILPKEILKLFKHEIKKRRKQRKRRDRK 475 (513)
T ss_pred Cc---eeEEeeccccCCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99 899999999999999999999999999999999883
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.25 E-value=8.1e-12 Score=118.99 Aligned_cols=69 Identities=29% Similarity=0.631 Sum_probs=55.1
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCC-------CCCCCcCCCCCCcccccCCCceeEEeec
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDED-------YKGDCFKRCPLCFVMISSKELYTIHIEN 175 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~-------~k~~~~~~CP~Cr~~i~~~~l~~v~~~~ 175 (549)
..+.+.||||++.+.+|++|.|||+||+.||..|+...... ........||+|+..+....+.+++-..
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 44678999999999999999999999999999998743210 0112347999999999999999887654
No 3
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8.3e-12 Score=120.89 Aligned_cols=63 Identities=32% Similarity=0.710 Sum_probs=56.1
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeecc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENV 176 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~~~~ 176 (549)
...+.|-|||+...+|++|.|||.|||+||.+|+.... ....||+|+..+..+.+.|+|-...
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~------~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP------NSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC------CCeeCCccccccccceEEeeeccCC
Confidence 45789999999999999999999999999999999864 2478999999999999999887654
No 4
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.1e-11 Score=118.61 Aligned_cols=54 Identities=35% Similarity=0.846 Sum_probs=47.2
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
.+....|.|||+...+|..|+|||+|||.||+.|.... ..||+||..+.+.++.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek---------~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK---------AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc---------cCCCcccccCCCccee
Confidence 34458999999999999999999999999999999763 5799999999877653
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.07 E-value=9.2e-11 Score=85.50 Aligned_cols=42 Identities=36% Similarity=0.786 Sum_probs=32.3
Q ss_pred ccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 113 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 113 CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
||||++.+.+|++++|||+||..||.+|+..... ....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~-----~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG-----SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS-----ST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC-----cCCCCcCC
Confidence 8999999999999999999999999999976542 12689988
No 6
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.3e-10 Score=108.23 Aligned_cols=56 Identities=38% Similarity=0.798 Sum_probs=47.9
Q ss_pred CCCcccccCcCCC--CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 109 LSVQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 109 ~~~~CpICle~~~--~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
..+.|||||+.+. .|+-|+|||+||..||...+... .+||+|+..|..+++.+|++
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~---------~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT---------NKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhC---------CCCCCcccccchhhheeccC
Confidence 3489999998875 45679999999999999999874 69999999999999888763
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.94 E-value=8.9e-10 Score=86.94 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=47.2
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
++.||||.+.+.+|++++|||+||..||..|+... ..||+|+.++...++.+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~---------~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH---------GTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC---------CCCCCCcCCCChhhceeC
Confidence 36799999999999999999999999999999762 689999999988887763
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.89 E-value=1.2e-09 Score=78.36 Aligned_cols=38 Identities=50% Similarity=1.213 Sum_probs=33.0
Q ss_pred ccccCcCCCCc-eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 113 CPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 113 CpICle~~~~P-~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
||||++.+.+| ++++|||+||..|+.+|++. . ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~--------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-N--------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-T--------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-c--------CCCcCC
Confidence 89999999999 58999999999999999987 3 689988
No 9
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.9e-09 Score=105.02 Aligned_cols=53 Identities=36% Similarity=0.893 Sum_probs=44.6
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHH-HHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQ-YLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~-~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
...+.|+||++.+..|.+++|||+|||.||+. |-... .-.||+||..+..+++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k--------~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK--------YEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhc--------cccCchhhhhccchhh
Confidence 45789999999999999999999999999999 54432 3569999998876654
No 10
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.73 E-value=9.2e-09 Score=74.27 Aligned_cols=40 Identities=45% Similarity=1.034 Sum_probs=36.0
Q ss_pred ccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 113 CPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 113 CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
|+||++.+..+. +++|||.||..||..|+.... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~-------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSG-------SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTS-------SSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcC-------CccCCcC
Confidence 899999999999 999999999999999999622 3789998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.73 E-value=8.3e-09 Score=78.02 Aligned_cols=46 Identities=39% Similarity=0.895 Sum_probs=39.8
Q ss_pred CCcccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+..|+||++.+.++++++|||. ||..|+.+|+.. ...||+||.++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR---------KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT---------TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc---------CCCCCcCChhhc
Confidence 5689999999999999999999 999999999984 279999999875
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.72 E-value=9.3e-09 Score=84.12 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=45.5
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
++.+.||||.+.+.+|++++|||+|+..||..|+... ...||+|+.++...+|.+.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~--------~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN--------GGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT--------SSB-TTT-SB-SGGGSEE-
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC--------CCCCCCCCCcCCcccceEC
Confidence 5688999999999999999999999999999999873 2799999999998888774
No 13
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.69 E-value=3.2e-09 Score=107.24 Aligned_cols=59 Identities=36% Similarity=0.762 Sum_probs=51.9
Q ss_pred CCCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 106 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 106 ~~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
....-+.|-||.++|..|++|+|||.||.-||..|+... ..||.|...+...+|+...+
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~---------p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK---------PQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC---------CCCCceecccchhhhhhhhH
Confidence 344568999999999999999999999999999999873 69999999999999886543
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.68 E-value=8.6e-09 Score=75.75 Aligned_cols=40 Identities=40% Similarity=0.876 Sum_probs=33.4
Q ss_pred cccccCcCCC---CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 008905 112 QCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (549)
Q Consensus 112 ~CpICle~~~---~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr 160 (549)
.|+||++.+. ..+.++|||+||..||..|+... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---------SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---------CcCCccC
Confidence 6999998763 45578999999999999999873 5999996
No 15
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=1.3e-08 Score=107.81 Aligned_cols=55 Identities=35% Similarity=0.696 Sum_probs=47.1
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
....+.|+||++.+.+|++++|||.||..||..|+... ..||+|+..+....|..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~---------~~CP~Cr~~~~~~~Lr~ 77 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ---------PKCPLCRAEDQESKLRS 77 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC---------CCCCCCCCccccccCcc
Confidence 34578999999999999999999999999999998652 58999999887666654
No 16
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.66 E-value=1.7e-08 Score=100.20 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=38.8
Q ss_pred CCCcccccCcCCCC--------ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~--------P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.+..||||++.+.. +++++|||+||..||..|+... ..||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~---------~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK---------NTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC---------CCCCCCCCEee
Confidence 46799999997654 3567999999999999999752 68999998764
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.62 E-value=1.9e-08 Score=97.13 Aligned_cols=55 Identities=29% Similarity=0.618 Sum_probs=41.2
Q ss_pred CCCCCcccccCcCCCC---------ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 107 NPLSVQCPICLEYPLC---------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 107 ~~~~~~CpICle~~~~---------P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
...+..|+||++.... +++.+|+|+||..||..|.....+.+ ....||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~---~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETG---ASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccC---cCCcCCCCcceee
Confidence 3457899999987532 34669999999999999998643211 2478999998764
No 18
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.2e-08 Score=113.51 Aligned_cols=57 Identities=26% Similarity=0.658 Sum_probs=51.8
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
.-+.||+|-.-+.+.+++.|||+||..|+...+.... ++||.|...|..+|+.+|++
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq--------RKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ--------RKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc--------CCCCCCCCCCCcccccccCC
Confidence 4579999999999999999999999999999998754 89999999999999988764
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.54 E-value=5e-08 Score=71.36 Aligned_cols=39 Identities=38% Similarity=0.921 Sum_probs=23.8
Q ss_pred ccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCC
Q 008905 113 CPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCP 157 (549)
Q Consensus 113 CpICle~~~~----P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP 157 (549)
||||.+ +.. |++++|||+||..||.+++..+.. ...+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~-----~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDR-----NRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S------S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCC-----CeeeCc
Confidence 999999 777 899999999999999999986421 247887
No 20
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.52 E-value=9e-08 Score=69.22 Aligned_cols=43 Identities=47% Similarity=1.037 Sum_probs=36.0
Q ss_pred cccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 112 QCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 112 ~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
.|+||++.+..+..+ +|||.||..|+..|+... ...||+|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG--------KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC--------cCCCCCCCCc
Confidence 599999998777755 599999999999999862 2689999875
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.45 E-value=1.8e-07 Score=65.20 Aligned_cols=39 Identities=49% Similarity=1.163 Sum_probs=34.6
Q ss_pred ccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 113 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 113 CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
|+||++....++.++|||.||..|+..|+... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG--------NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC--------cCCCCCC
Confidence 89999998899999999999999999999832 2689987
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.43 E-value=1.7e-07 Score=68.96 Aligned_cols=41 Identities=41% Similarity=0.926 Sum_probs=33.9
Q ss_pred cccccCcCC---CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 112 QCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 112 ~CpICle~~---~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
.|+||++.+ ..+.+++|||+||..|+..+. . ....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~--------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G--------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C--------CCCCCcCCCC
Confidence 499999887 357799999999999999887 1 1379999974
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.40 E-value=1e-07 Score=94.73 Aligned_cols=55 Identities=31% Similarity=0.494 Sum_probs=47.8
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
....+.|-||-+.+..|..|+|||.||.-||.+++... ..||+|+......-++.
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q---------p~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ---------PFCPVCREDPCESRLRG 76 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCC---------CCCccccccHHhhhccc
Confidence 34568899999999999999999999999999999763 68999999887666654
No 24
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=2.2e-07 Score=95.01 Aligned_cols=58 Identities=24% Similarity=0.592 Sum_probs=46.3
Q ss_pred CCcccccCc-CCCCce---Ec-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeec
Q 008905 110 SVQCPICLE-YPLCPQ---IT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIEN 175 (549)
Q Consensus 110 ~~~CpICle-~~~~P~---~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~~~ 175 (549)
+..||||.. .+.+|. ++ .|||.||..|+..++..+. ..||.|+.++..+.+++..+.+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~--------~~CP~C~~~lrk~~fr~q~F~D 65 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGS--------GSCPECDTPLRKNNFRVQLFED 65 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCC--------CCCCCCCCccchhhcccccccc
Confidence 568999996 356665 33 6999999999999886532 6899999999999988766654
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.22 E-value=6.9e-07 Score=73.11 Aligned_cols=40 Identities=48% Similarity=0.956 Sum_probs=31.6
Q ss_pred cccccCcCCCC------------c-eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 008905 112 QCPICLEYPLC------------P-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (549)
Q Consensus 112 ~CpICle~~~~------------P-~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr 160 (549)
.|+||++.+.. + ....|||.|+..||.+|+... ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN---------NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS---------SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC---------CcCCCCC
Confidence 49999988722 2 255899999999999999763 5999997
No 26
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.18 E-value=3.4e-07 Score=71.85 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=26.2
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
.+.|++|.+.+..|+ +..|.|+||+.||...+. ..||+|..+.-.+|++
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----------~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----------SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----------TB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----------CCCCCcCChHHHHHHH
Confidence 578999999999998 579999999999966432 3699999988777765
No 27
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1e-06 Score=88.80 Aligned_cols=46 Identities=39% Similarity=0.861 Sum_probs=40.7
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
..+.+.||||++.+..|++++|||.||..|+..++. . ...||.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~--------~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G--------PLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-C--------CcCCcccCC
Confidence 346789999999999999999999999999999987 2 279999994
No 28
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.6e-06 Score=87.53 Aligned_cols=63 Identities=24% Similarity=0.512 Sum_probs=47.4
Q ss_pred CcCcCCcchhhhhhhcCCCCCCcccccCcCC-CC------------ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCC
Q 008905 90 DPDKMLQWEDIICVRYSNPLSVQCPICLEYP-LC------------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRC 156 (549)
Q Consensus 90 dpd~~v~w~~i~~v~~~~~~~~~CpICle~~-~~------------P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~C 156 (549)
|-|.++.-..++|+ ...+..|-||++.+ .. |..++|||++...|+..|++.. -.|
T Consensus 270 dl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---------QTC 337 (491)
T COG5243 270 DLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---------QTC 337 (491)
T ss_pred HHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---------cCC
Confidence 34455554445443 55678999999873 32 4688999999999999999875 489
Q ss_pred CCCccccc
Q 008905 157 PLCFVMIS 164 (549)
Q Consensus 157 P~Cr~~i~ 164 (549)
|+||.++-
T Consensus 338 PICr~p~i 345 (491)
T COG5243 338 PICRRPVI 345 (491)
T ss_pred CcccCccc
Confidence 99999753
No 29
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.1e-06 Score=84.11 Aligned_cols=50 Identities=36% Similarity=0.857 Sum_probs=42.1
Q ss_pred CCCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
....+||+|.+.|+.|.+. +|||+||+.||..-...+. +..||.|.+.+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a-------sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA-------SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh-------hcccCccCCCCc
Confidence 3567999999999999965 5999999999988776542 589999998765
No 30
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=7.8e-07 Score=91.11 Aligned_cols=49 Identities=39% Similarity=0.825 Sum_probs=42.3
Q ss_pred CCCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
..++.|||||+.+...+++ .|+|-||..||..-+..+. ..||.||..+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn--------~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN--------NECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC--------CCCchHHhhcc
Confidence 3578999999999998876 6999999999999888754 79999998763
No 31
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=5.8e-06 Score=62.41 Aligned_cols=46 Identities=33% Similarity=0.783 Sum_probs=40.3
Q ss_pred CcccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 111 VQCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 111 ~~CpICle~~~~P~~t~CGH-~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
-+|.||.+-+++.++-.||| -.|+.|-++.+... ...||+||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~--------~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL--------HGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc--------CCcCcchhhHHH
Confidence 58999999999999999999 57999999988763 269999999874
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.7e-05 Score=79.88 Aligned_cols=51 Identities=31% Similarity=0.586 Sum_probs=43.6
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
..-.|+||+..+..|+.+.|+|.||+-||......+ .+.|++||.+|...-
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd--------k~~CavCR~pids~i 56 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND--------KKTCAVCRFPIDSTI 56 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcC--------CCCCceecCCCCcch
Confidence 356899999999999999999999999998766654 368999999997653
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.5e-05 Score=89.16 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=42.9
Q ss_pred CCCcccccCcCCCC-----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 109 LSVQCPICLEYPLC-----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 109 ~~~~CpICle~~~~-----P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
....|+||++.+.. |..++|||+||..|+..|++.. ..||+||..+....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~---------qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ---------QTCPTCRTVLYDYV 344 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh---------CcCCcchhhhhccc
Confidence 46799999999888 7899999999999999999983 59999999554433
No 34
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=3.5e-05 Score=77.52 Aligned_cols=50 Identities=28% Similarity=0.690 Sum_probs=40.7
Q ss_pred CCCCCcccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 107 NPLSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P---~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
......|.||++.++.- +.++|.|.|...|+..|+.. ....||+|+.++.
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--------y~~~CPvCrt~iP 372 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--------YSNKCPVCRTAIP 372 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--------hcccCCccCCCCC
Confidence 34568999999887532 37899999999999999984 2379999999875
No 35
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.65 E-value=2.6e-05 Score=60.68 Aligned_cols=43 Identities=42% Similarity=0.732 Sum_probs=30.5
Q ss_pred CCCcccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC
Q 008905 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 158 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~-t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~ 158 (549)
..+.|||.+.++.+|+. ..|||+|....|..|+... ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~-------~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN-------GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT-------S-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc-------CCCCCCC
Confidence 46899999999999996 5999999999999999432 2479998
No 36
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.63 E-value=3.5e-05 Score=64.29 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=28.3
Q ss_pred EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 125 ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 125 ~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.-.|+|.|...||.+|+..... ...||+||.....
T Consensus 49 ~g~C~H~FH~hCI~kWl~~~~~------~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLSTQSS------KGQCPMCRQPWKF 83 (85)
T ss_pred eccCccHHHHHHHHHHHccccC------CCCCCCcCCeeee
Confidence 4479999999999999997531 3699999987643
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=4e-05 Score=79.85 Aligned_cols=44 Identities=36% Similarity=0.665 Sum_probs=37.1
Q ss_pred cccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 112 QCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 112 ~CpICle~~~~P---~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
.|.||+|.+... ++++|+|.|...||-.|+.... ..||+|+..+
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r--------~~CPvCK~di 277 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR--------TFCPVCKRDI 277 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhcC--------ccCCCCCCcC
Confidence 999999988643 4899999999999999998742 5699998744
No 38
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.46 E-value=3.2e-05 Score=79.07 Aligned_cols=50 Identities=36% Similarity=0.813 Sum_probs=43.4
Q ss_pred CCCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 109 ~~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
...+|++|-.+++++. ++.|-|+||..||..|+... ..||.|...+....
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~---------~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES---------KYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh---------ccCCccceeccCcc
Confidence 4578999999999888 56899999999999999873 79999998887653
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=6.2e-05 Score=80.22 Aligned_cols=49 Identities=31% Similarity=0.688 Sum_probs=43.2
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
..++.|.||...+..|+.++|||.||..||.+.+.. ...||+|+..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~---------~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ---------ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc---------CCCCccccccccc
Confidence 468999999999999999999999999999996653 3799999998764
No 40
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.28 E-value=0.00012 Score=73.37 Aligned_cols=80 Identities=31% Similarity=0.546 Sum_probs=57.3
Q ss_pred ccCcEEEeCCCCCCCCCCCCcCcCCcchhhhhhh---cCCCC----------CCcccccCcCCCCceEc-CCCCcccHHH
Q 008905 71 QANYKFVVLDTGDHAPESMDPDKMLQWEDIICVR---YSNPL----------SVQCPICLEYPLCPQIT-SCGHIFCFPC 136 (549)
Q Consensus 71 ~an~~Fvv~~~~dy~~~~~dpd~~v~w~~i~~v~---~~~~~----------~~~CpICle~~~~P~~t-~CGH~FC~~C 136 (549)
.+|...++.+.|.|..+..| + -.|++--+-. ...++ .+.||.|...+.+|+.| .|||.||..|
T Consensus 225 ~~~a~imit~EG~yVv~qpd--v-qsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~ec 301 (427)
T COG5222 225 PSNAAIMITPEGGYVVAQPD--V-QSWEKYQQRTKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDEC 301 (427)
T ss_pred ccccceEEcCCCCeEEeccc--h-HHHHHHHHHHHhhhhCchhhhccCCCCccccCcchhhhhhCcccCccccchHHHHH
Confidence 45667888999999876444 2 2465543311 11111 38999999999999988 6899999999
Q ss_pred HHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 137 ILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 137 I~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
|..-+.... +.||.|..
T Consensus 302 i~~al~dsD--------f~CpnC~r 318 (427)
T COG5222 302 IGTALLDSD--------FKCPNCSR 318 (427)
T ss_pred Hhhhhhhcc--------ccCCCccc
Confidence 987776543 89999943
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.20 E-value=0.00012 Score=69.56 Aligned_cols=45 Identities=31% Similarity=0.702 Sum_probs=38.4
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
.+.|-||-..+..|++|.|||.||..|..+-+..+ ..|-+|....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg---------~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG---------DECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC---------Ccceecchhh
Confidence 47899999999999999999999999988765442 6899997654
No 42
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.07 E-value=0.00024 Score=76.26 Aligned_cols=56 Identities=30% Similarity=0.537 Sum_probs=45.8
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~ 166 (549)
...+..|.+|-++..++..++|.|.||.-||..|+..-.+. ....||.|...+.-.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~----~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMEN----NNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcc----cCCCCcccccccccc
Confidence 34567899999999999999999999999999998864322 127999998877543
No 43
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0003 Score=72.25 Aligned_cols=50 Identities=32% Similarity=0.723 Sum_probs=43.9
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
..++..||||..-+..++.++|||.-|+.||.+++... +.|-.|...+..
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~---------k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC---------KRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHHhcC---------CeeeEecceeee
Confidence 35678999999999999999999999999999999874 689999876653
No 44
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.02 E-value=0.00041 Score=72.20 Aligned_cols=57 Identities=28% Similarity=0.638 Sum_probs=46.0
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeec
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIEN 175 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~~~ 175 (549)
...|.||-+--.+-.+-+|||..|..|+..|...++ ...||.||..|.-.+ +|.+..
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~-------gq~CPFCRcEIKGte--~viid~ 425 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE-------GQTCPFCRCEIKGTE--PVIIDP 425 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCC-------CCCCCceeeEecccc--ceeeec
Confidence 356999999888888999999999999999997764 269999999876544 444443
No 45
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00024 Score=71.63 Aligned_cols=46 Identities=35% Similarity=0.798 Sum_probs=39.5
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.+.|-||..++..|+++.|||.||..|-+..+..+ ..|++|...+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~---------~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG---------EKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccC---------Ccceecccccc
Confidence 56799999999999999999999999988766543 68999987654
No 46
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.00073 Score=66.43 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=46.5
Q ss_pred CCCcccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 109 ~~~~CpICle~~~~P~----~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
..+.||||.+.+.+.+ +-+|||+||..|..+++..+ ..||+|..++..+++..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D---------~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD---------MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc---------ccccCCCCcCcccceEee
Confidence 5789999999987654 56999999999999998763 699999999999988764
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00067 Score=72.45 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=37.3
Q ss_pred CCCcccccCcCCC-----------------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPL-----------------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~-----------------~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
....|+||+.+.. +=+.|+|.|+|...|+++|+..- ...||+||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--------kl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--------KLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--------cccCCccCCCCC
Confidence 3567999997532 01356999999999999999852 269999999875
No 48
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00071 Score=70.43 Aligned_cols=54 Identities=26% Similarity=0.688 Sum_probs=38.9
Q ss_pred CCcccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 110 SVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 110 ~~~CpICle~~~~P~----~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
...|.||.+..-.-. +-.|||+|...|+..|+..... .+.||+|+-.+..+.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps------~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS------NRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc------cCCCCceeecccceeee
Confidence 357999976543222 4469999999999999998751 26999999555544443
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0011 Score=68.65 Aligned_cols=48 Identities=25% Similarity=0.555 Sum_probs=40.0
Q ss_pred CCCCcccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH-~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.....|-||+..+.+-++++|-| -.|..|-..+.-+ ...||+||.++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q---------~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ---------TNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh---------hcCCCccccchH
Confidence 34679999999999999999999 5699998766533 268999999875
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.65 E-value=0.00081 Score=72.28 Aligned_cols=54 Identities=33% Similarity=0.754 Sum_probs=45.8
Q ss_pred CCCCcccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 108 PLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~-t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
.+.+.||||..++..|+. +.|||.||..|+..|+... ..||.|+..+......+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~---------~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNH---------QKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccC---------cCCcccccccchhhccC
Confidence 467899999999999998 5999999999999999872 69999988776655443
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.51 E-value=0.00089 Score=70.99 Aligned_cols=45 Identities=29% Similarity=0.670 Sum_probs=36.2
Q ss_pred CCCcccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~----~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+-.+|||||+-+...+ .+.|.|.|...|+..|.. ..||+||-...
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----------~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----------SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc-----------CcChhhhhhcC
Confidence 5679999998765433 568999999999999985 48999987655
No 52
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00074 Score=67.92 Aligned_cols=42 Identities=31% Similarity=0.754 Sum_probs=35.0
Q ss_pred CCcccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH-~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
...|.||++.|.+.+.+.||| +-|..|-. ....||+||..+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-------------rm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-------------RMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-------------ccccCchHHHHHH
Confidence 567999999999999999999 66998832 2468999998653
No 53
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.48 E-value=0.00077 Score=76.79 Aligned_cols=52 Identities=33% Similarity=0.724 Sum_probs=45.8
Q ss_pred CcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 111 ~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
..|+||++ +..++++.|||.||..|+...+..... ..||+|+..+....+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~-------~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSEN-------APCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccC-------CCCcHHHHHHHHHHHhh
Confidence 89999999 888889999999999999999987652 48999999988777665
No 54
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.45 E-value=0.003 Score=64.27 Aligned_cols=53 Identities=17% Similarity=0.377 Sum_probs=40.5
Q ss_pred CCCCcccccCcCCCCc---e-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 108 PLSVQCPICLEYPLCP---Q-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 108 ~~~~~CpICle~~~~P---~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
...+.|||+...+..- + +.+|||+||..||...- . ...||+|..++...|+.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~-------~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---K-------SKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---c-------cccccccCCccccCCEEE
Confidence 4578999999888432 2 56999999999998873 1 157999999887666543
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.001 Score=69.77 Aligned_cols=58 Identities=28% Similarity=0.573 Sum_probs=44.8
Q ss_pred CCCcccccCcCCCCce-----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 109 LSVQCPICLEYPLCPQ-----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 109 ~~~~CpICle~~~~P~-----~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
...+||||++.+.-|. .+.|||.|-..||.+|+.. .....||.|...-..++|++.+.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k-------~~~~~cp~c~~katkr~i~~e~a 65 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK-------KTKMQCPLCSGKATKRQIRPEYA 65 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh-------hhhhhCcccCChhHHHHHHHHHH
Confidence 3578999998766543 5689999999999999942 13479999988877777766433
No 56
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.001 Score=68.10 Aligned_cols=54 Identities=31% Similarity=0.773 Sum_probs=43.3
Q ss_pred CCCCCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 106 SNPLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 106 ~~~~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
..++...||||+..-.+|..+ --|-+||++|+.+|+.. ...||+-..+....++
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---------~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---------YGHCPVTGYPASVDHL 350 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---------cCCCCccCCcchHHHH
Confidence 445678899999998888754 56999999999999985 3799998777655444
No 57
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.002 Score=66.92 Aligned_cols=45 Identities=33% Similarity=0.844 Sum_probs=36.9
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+....|-||++.+.+.+.++|||..| |..-.... ..||+||..|.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l----------~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL----------PQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhhC----------CCCchhHHHHH
Confidence 34578999999999999999999987 87665544 57999998774
No 58
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0023 Score=67.12 Aligned_cols=54 Identities=28% Similarity=0.602 Sum_probs=39.8
Q ss_pred CCCCcccccCcCCCCce-----E---cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 108 PLSVQCPICLEYPLCPQ-----I---TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~-----~---t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
..+..|.||++...+.. . .+|-|.||..||..|...... .-...+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~--~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF--ESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc--ccccccCCCcccCcc
Confidence 45789999999765544 2 579999999999999965431 111258999998754
No 59
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.16 E-value=0.0015 Score=53.07 Aligned_cols=55 Identities=33% Similarity=0.792 Sum_probs=25.9
Q ss_pred CCcccccCcCCC-C---ceE----cCCCCcccHHHHHHHHHcCCCCCCC--CCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPL-C---PQI----TSCGHIFCFPCILQYLLMGDEDYKG--DCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~-~---P~~----t~CGH~FC~~CI~~~~~~~~~~~k~--~~~~~CP~Cr~~i~ 164 (549)
+..|+||..... . |.. ..|+++|...||..|+...++.... .....||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999997643 2 331 2799999999999999864322111 11247999998775
No 60
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.76 E-value=0.0031 Score=71.96 Aligned_cols=49 Identities=22% Similarity=0.544 Sum_probs=39.1
Q ss_pred CCCcccccCcCCC-------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPL-------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~-------~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
...+|+||...+. .-++..|.|.|...|+..|+..+. ...||+||..+.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-------~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-------RSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-------CCCCCccccccc
Confidence 4568999997643 234667999999999999999864 479999997654
No 61
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.52 E-value=0.016 Score=43.64 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=33.9
Q ss_pred cccccCc--CCCCceEcCCC-----CcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 008905 112 QCPICLE--YPLCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (549)
Q Consensus 112 ~CpICle--~~~~P~~t~CG-----H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr 160 (549)
.|-||++ ....+.+.+|. |.+...|+.+|+.... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-------CCcCCCCC
Confidence 4899997 45677788985 7899999999998753 26899994
No 62
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.48 E-value=0.0029 Score=70.98 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=38.1
Q ss_pred CCCcccccCcCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 008905 109 LSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (549)
Q Consensus 109 ~~~~CpICle~~~~P~---~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~ 166 (549)
....||+|+..+.+.. -..|+|.||..||..|-... -.||+|+..+..-
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a---------qTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA---------QTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc---------ccCchhhhhhhee
Confidence 4568999997655433 34799999999999998764 5899999877643
No 63
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.16 E-value=0.026 Score=52.49 Aligned_cols=35 Identities=29% Similarity=0.617 Sum_probs=25.8
Q ss_pred CCCcccccCcCCCCceEcCC------------CCcc-cHHHHHHHHHc
Q 008905 109 LSVQCPICLEYPLCPQITSC------------GHIF-CFPCILQYLLM 143 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~C------------GH~F-C~~CI~~~~~~ 143 (549)
++..||||++.|.+++++-| +..| ...||.+|.+.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA 48 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence 35689999999999998764 3222 35688888775
No 64
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.019 Score=58.07 Aligned_cols=54 Identities=30% Similarity=0.790 Sum_probs=42.8
Q ss_pred cccccCc-CCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 112 QCPICLE-YPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 112 ~CpICle-~~~~P~----~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
.||+|.. .+.+|- +-+|||..|-.|+-+.+..+. ..||.|...+....++.-.+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~--------~~CpeC~~iLRk~nfr~q~f 60 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP--------AQCPECMVILRKNNFRVQTF 60 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC--------CCCCcccchhhhcccchhhc
Confidence 5999994 566664 338999999999999998864 79999999888777654333
No 65
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.84 E-value=0.0078 Score=59.58 Aligned_cols=43 Identities=40% Similarity=0.986 Sum_probs=29.9
Q ss_pred CcccccCcCC-CCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 111 VQCPICLEYP-LCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 111 ~~CpICle~~-~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
..|-.|.--+ ..|. +|.|+|+||..|... . ....||+|+.++.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~----~-------~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKA----S-------SPDVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhccc----C-------Cccccccccceee
Confidence 3588887533 4444 889999999999632 1 1138999988654
No 66
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.0082 Score=59.97 Aligned_cols=55 Identities=24% Similarity=0.538 Sum_probs=42.5
Q ss_pred CCCcccccCcCCC----------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 109 LSVQCPICLEYPL----------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 109 ~~~~CpICle~~~----------~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
++..|.||-..+. +-..++|+|+|.-.||..|--.++ ...||.|.+.+..+.+.+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK-------kqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK-------KQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC-------CCCCchHHHHhhHhhhcc
Confidence 4678999986543 234789999999999999998764 379999998776555544
No 67
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.029 Score=59.22 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=41.1
Q ss_pred CCCCcccccCcCC---CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 108 PLSVQCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 108 ~~~~~CpICle~~---~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
...+.|||=.+.- --|+++.|||+.|..-|.+....+. ...+||.|-......+.+
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~------~sfKCPYCP~e~~~~~~k 390 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS------QSFKCPYCPVEQLASDTK 390 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC------eeeeCCCCCcccCHHhcc
Confidence 3568899977643 2477999999999999999887653 248999996554444433
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.031 Score=59.13 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=36.3
Q ss_pred CCCcccccCcCCCC---ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 008905 109 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (549)
Q Consensus 109 ~~~~CpICle~~~~---P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr 160 (549)
.-+.|.||++.... =..++|+|+||..|+..|+......+. -...+||-|.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~-v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQ-VSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcce-eeeecCCCCC
Confidence 46889999987543 237899999999999999986432211 1236787653
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.71 E-value=0.035 Score=42.60 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=36.5
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
...|-.|...-...++++|||..|..|.-- .++..||+|..++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~-----------~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG-----------ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh-----------hhccCCCCCCCcccCCC
Confidence 456778888888888999999999999532 13578999998876543
No 70
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=93.50 E-value=0.014 Score=65.67 Aligned_cols=62 Identities=31% Similarity=0.518 Sum_probs=47.9
Q ss_pred hhhcCCCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 102 CVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 102 ~v~~~~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
+|.......++||||+.....|..+.|-|+||..|+...+.... ....||+|...+....++
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~------~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK------GPKQCALCKSDIEKRSLR 74 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccC------ccccchhhhhhhhhhhcc
Confidence 33333445789999999999999999999999999988776643 147999999776655544
No 71
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=93.43 E-value=0.043 Score=58.17 Aligned_cols=36 Identities=28% Similarity=0.694 Sum_probs=32.2
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 143 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~ 143 (549)
++++.||||...+..|.+++|||..|..|-...+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 468899999999999999999999999998866654
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.053 Score=55.96 Aligned_cols=46 Identities=30% Similarity=0.618 Sum_probs=38.3
Q ss_pred CCcccccCcCCC------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 110 SVQCPICLEYPL------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 110 ~~~CpICle~~~------~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
...|-||-+.+. .|+.+.|||.+|..|+...+... +..||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~--------~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS--------RILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc--------eeeccCCCCcc
Confidence 357999987653 58899999999999999988764 47899999985
No 73
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.22 E-value=0.088 Score=47.55 Aligned_cols=53 Identities=25% Similarity=0.578 Sum_probs=44.7
Q ss_pred CCCCcccccCcCCCCceEcC----CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 008905 108 PLSVQCPICLEYPLCPQITS----CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~----CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~ 166 (549)
+.-++|-||.+.-.+.+.++ ||-..|..|....|+... .+..||.|..++...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~------~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN------LYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc------cCCCCCccccccccc
Confidence 35689999999988888764 999999999999999865 368999999887643
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.16 E-value=0.059 Score=40.33 Aligned_cols=43 Identities=30% Similarity=0.511 Sum_probs=21.2
Q ss_pred ccccCcCCCC--ceEc--CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 113 CPICLEYPLC--PQIT--SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 113 CpICle~~~~--P~~t--~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
||+|.+.+.. -.+. +||+..|..|..+.+... ...||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--------~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE--------GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS---------SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc--------CCCCCCCCCCC
Confidence 8999987732 1233 689999999988877642 26999999863
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.05 E-value=0.093 Score=43.18 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=32.6
Q ss_pred CCcccccCcCCC----Cce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPL----CPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~----~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.-.||-|..-+. .|+ --.|.|.|..-||.+|+... ..||+|+....
T Consensus 31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk---------~~CPld~q~w~ 81 (88)
T COG5194 31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK---------GVCPLDRQTWV 81 (88)
T ss_pred cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC---------CCCCCCCceeE
Confidence 345666664221 233 34699999999999999873 68999988653
No 76
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.049 Score=44.41 Aligned_cols=32 Identities=31% Similarity=0.637 Sum_probs=26.6
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 127 SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 127 ~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.|.|.|..-||.+|+..... ...||+||....
T Consensus 50 ~C~h~fh~hCI~~wl~~~ts------q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTS------QGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccc------cccCCcchheeE
Confidence 69999999999999987642 369999998653
No 77
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.80 E-value=0.093 Score=54.10 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=41.0
Q ss_pred CCCCCcccccCcCCCC--ce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 107 NPLSVQCPICLEYPLC--PQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 107 ~~~~~~CpICle~~~~--P~--~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
..++-.||+|++++.. -- -.+||-..|..|.......- ..+||-||.......++-+.+
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l--------ngrcpacrr~y~denv~~~~~ 73 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL--------NGRCPACRRKYDDENVRYVTL 73 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc--------cCCChHhhhhccccceeEEec
Confidence 3445569999998642 22 34789888888876544432 268999999888877765544
No 78
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=0.085 Score=52.29 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcC
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMG 144 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~ 144 (549)
.-.|.+||.+..+|++++=||+||..||+.|+-..
T Consensus 43 FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 45789999999999999999999999999998764
No 79
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.38 E-value=0.044 Score=53.99 Aligned_cols=58 Identities=26% Similarity=0.600 Sum_probs=43.5
Q ss_pred CCCcccccCc-CCCCce----EcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCC--CCcccccCCCceeEEee
Q 008905 109 LSVQCPICLE-YPLCPQ----ITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCP--LCFVMISSKELYTIHIE 174 (549)
Q Consensus 109 ~~~~CpICle-~~~~P~----~t~-CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP--~Cr~~i~~~~l~~v~~~ 174 (549)
.+..||||.. -+.+|- +-+ |-|..|-+|+-+.+..++ ..|| -|...+....++.-.++
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp--------AqCP~~gC~kILRK~kf~~qtFe 74 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP--------AQCPYKGCGKILRKIKFIKQTFE 74 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC--------CCCCCccHHHHHHHhcccccccc
Confidence 3568999994 466664 224 999999999999998865 7899 79888877666543333
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.09 E-value=0.1 Score=54.06 Aligned_cols=48 Identities=27% Similarity=0.609 Sum_probs=38.9
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
++...|-||-+-.+-...++|||..|.-|-++.-..-. .+.||+|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-------~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-------QKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-------ccCCCccccc
Confidence 35678999999888888999999999999887655421 3799999763
No 81
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.91 E-value=0.16 Score=52.72 Aligned_cols=44 Identities=27% Similarity=0.671 Sum_probs=35.4
Q ss_pred CCCcccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~-t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+-+.||||.+.+..|.+ -.=||.-|..|-.+. ..+||.|+.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~------------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV------------SNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhh------------cccCCccccccc
Confidence 45789999999988863 355999999996532 369999999887
No 82
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=90.87 E-value=0.58 Score=42.57 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=49.6
Q ss_pred CceEEEecCCCCceeechhcHHHHHHhhCCCCCCCccceeeEEEEEeeccC--HHHHhhhccccccCCCceEEEEEec
Q 008905 431 DSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQS--EAMRRRYRYLSHFSLTTTFQLCEID 506 (549)
Q Consensus 431 ~~yyFYQa~dgq~ifLhPLdiKiL~~~fGsy~~~P~~I~~kV~eie~~~~~--e~~Rkr~kyLsHLPl~~~~~f~EiD 506 (549)
.+|.=++. +..+||||.=++.- .-..-|.-|.|+|++||..+++ .+. .|| +||.||.|..|++.
T Consensus 62 ~~~~af~~-~~~~YFL~~~s~~~------~~~~~~~w~vgrI~~~e~~~v~~~~~~-Npy----~Lp~Gt~~y~V~v~ 127 (129)
T PF10377_consen 62 QPWAAFNV-GCPHYFLHEDSIAA------NELKRREWIVGRIVSIEECQVKDDKDS-NPY----NLPVGTKFYRVTVE 127 (129)
T ss_pred cceEEeeC-CCceEEEecccchh------ccCCCCCEEEEEEEEEEEEEeccCCCC-CCC----cCCCCCEEEEEEEE
Confidence 45777777 57999999887764 1122388999999999999885 333 566 69999999999875
No 83
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.082 Score=53.98 Aligned_cols=60 Identities=27% Similarity=0.556 Sum_probs=38.2
Q ss_pred CCcchhhhhhh---cCCCCCCcccccCcC-CCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 94 MLQWEDIICVR---YSNPLSVQCPICLEY-PLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 94 ~v~w~~i~~v~---~~~~~~~~CpICle~-~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.+.|+.-+-++ ...+..-.|--|--+ .+-.+|++|.|+||+.|-.. .. -+.||.|-..+.
T Consensus 71 hl~w~~~V~~~gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~----~~-------dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 71 HLTWIKPVGRRGEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARS----DS-------DKICPLCDDRVQ 134 (389)
T ss_pred ceeeeeecccccccccCcceEeecccCCcceeeecccccchhhhhhhhhc----Cc-------cccCcCcccHHH
Confidence 46676544332 122224457777644 35577999999999999642 11 279999987664
No 84
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.12 Score=57.29 Aligned_cols=32 Identities=31% Similarity=0.705 Sum_probs=26.5
Q ss_pred CcccccCcCCC----CceEcCCCCcccHHHHHHHHH
Q 008905 111 VQCPICLEYPL----CPQITSCGHIFCFPCILQYLL 142 (549)
Q Consensus 111 ~~CpICle~~~----~P~~t~CGH~FC~~CI~~~~~ 142 (549)
+.|+||+..+. .|+.+.|||+.|..|+.....
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh
Confidence 57999987664 688899999999999876554
No 85
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.18 E-value=0.15 Score=53.66 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=36.5
Q ss_pred CCCcccccCcCCC--C--ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 109 LSVQCPICLEYPL--C--PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 109 ~~~~CpICle~~~--~--P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
.++-|..|-+.+- + -.-++|.|||...|+..++.... ...||.|+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~-------~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG-------TRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC-------CCCCccHHH
Confidence 4688999998642 2 22679999999999999997643 489999984
No 86
>PHA03096 p28-like protein; Provisional
Probab=88.79 E-value=0.23 Score=51.09 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.3
Q ss_pred CcccccCcCCCC--------ceEcCCCCcccHHHHHHHHHcCC
Q 008905 111 VQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGD 145 (549)
Q Consensus 111 ~~CpICle~~~~--------P~~t~CGH~FC~~CI~~~~~~~~ 145 (549)
-.|.||++.... ..+..|-|.||..|+..|.....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~ 221 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL 221 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh
Confidence 679999986432 12457999999999999998753
No 87
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.74 E-value=0.23 Score=42.84 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=25.5
Q ss_pred CCCCcccccCcCCCCce--EcCCCCcccHHHHH
Q 008905 108 PLSVQCPICLEYPLCPQ--ITSCGHIFCFPCIL 138 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~--~t~CGH~FC~~CI~ 138 (549)
.+...|++|...+.... +.+|||+|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45678999999887665 56999999999974
No 88
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.37 E-value=0.32 Score=49.87 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=39.2
Q ss_pred CCCcccccCcCCC---CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 109 LSVQCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 109 ~~~~CpICle~~~---~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
.-+.||+=-+.-+ .|+|+.|||+.-..-+.+.-..+. -..+||.|-..-...+.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~------~~FKCPYCP~~~~~~~~ 391 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV------LSFKCPYCPEMSKYENI 391 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc------EEeeCCCCCcchhhhhh
Confidence 4578998766543 478999999999998887776653 25899999665444333
No 89
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.28 E-value=0.094 Score=53.35 Aligned_cols=56 Identities=32% Similarity=0.584 Sum_probs=38.4
Q ss_pred CCCcccccCcCCC-Cc--eEcCCCCcccHHHHHHHHHcCCCC--------------CCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPL-CP--QITSCGHIFCFPCILQYLLMGDED--------------YKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~-~P--~~t~CGH~FC~~CI~~~~~~~~~~--------------~k~~~~~~CP~Cr~~i~ 164 (549)
....|.|||.-|. .| ..|.|-|-|...|+.+|+...... -+..-...||+|+..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4578999997664 34 378999999999999998753210 00001246999998764
No 90
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=0.59 Score=51.28 Aligned_cols=63 Identities=29% Similarity=0.510 Sum_probs=42.4
Q ss_pred CCCCcccccCcCCCC-ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--CcccccCCCceeE
Q 008905 108 PLSVQCPICLEYPLC-PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYTI 171 (549)
Q Consensus 108 ~~~~~CpICle~~~~-P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~--Cr~~i~~~~l~~v 171 (549)
.....|.||.+.+.. ...+.|||.||..|+..|+...-..+.... .+||. |...+....+..+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~-i~cp~~~C~a~v~~~~i~~~ 133 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK-IKCPAHGCPALVGEDTVEKL 133 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccccc-ccCCCCCccccCCCceeeee
Confidence 345799999988775 557799999999999999987532211111 35654 6666655554433
No 91
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.61 E-value=0.18 Score=60.18 Aligned_cols=44 Identities=34% Similarity=0.715 Sum_probs=37.5
Q ss_pred CCCcccccCcCCC-CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 109 LSVQCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 109 ~~~~CpICle~~~-~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
....|+||++.+. ...++.|||-+|..|+..|+... ..||+|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~---------s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS---------SRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh---------ccCcchhh
Confidence 3458999999988 55588999999999999999873 79999973
No 92
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=0.49 Score=40.92 Aligned_cols=26 Identities=38% Similarity=0.781 Sum_probs=23.2
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 127 SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 127 ~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
.|.|.|..-||.+|+++. ..||+|..
T Consensus 80 ~CNHaFH~hCisrWlktr---------~vCPLdn~ 105 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR---------NVCPLDNK 105 (114)
T ss_pred ecchHHHHHHHHHHHhhc---------CcCCCcCc
Confidence 599999999999999984 58999965
No 93
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.59 E-value=0.41 Score=51.47 Aligned_cols=57 Identities=28% Similarity=0.607 Sum_probs=38.0
Q ss_pred CCcccccC-cCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--CcccccCCCce
Q 008905 110 SVQCPICL-EYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELY 169 (549)
Q Consensus 110 ~~~CpICl-e~~~~P~---~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~--Cr~~i~~~~l~ 169 (549)
...|.||. +.+.... +..|||-||..|+.+|+..... ......||. |...+....+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~---~~~~~~C~~~~C~~~l~~~~c~ 208 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLL---SGTVIRCPHDGCESRLTLESCR 208 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhc---cCCCccCCCCCCCccCCHHHHh
Confidence 57899999 5554423 5679999999999999986521 112367765 55555444433
No 94
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=85.57 E-value=1.4 Score=50.88 Aligned_cols=57 Identities=28% Similarity=0.536 Sum_probs=42.0
Q ss_pred cCCCCCCcccccCcCC--CCce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 105 YSNPLSVQCPICLEYP--LCPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 105 ~~~~~~~~CpICle~~--~~P~--~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
.+....+.|-||.+.+ .+|+ ...|-|+|.+.||..|-...+.. +....+||.|....
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~--~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKT--GQDGWRCPACQSVS 246 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhc--cCccccCCcccchh
Confidence 3456789999999865 4565 45688999999999999874321 22347899998543
No 95
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=0.45 Score=48.20 Aligned_cols=37 Identities=27% Similarity=0.663 Sum_probs=32.1
Q ss_pred CCCcccccCcCCCCceEcCC----CCcccHHHHHHHHHcCC
Q 008905 109 LSVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMGD 145 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~C----GH~FC~~CI~~~~~~~~ 145 (549)
..+.|-+|.+-+.+-....| .|.||++|-...++...
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 45899999999999888888 79999999999988754
No 96
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.11 E-value=1.1 Score=33.90 Aligned_cols=48 Identities=25% Similarity=0.600 Sum_probs=23.5
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
.+.|||....+..|+ -..|.|.-|++ +..|+...... ....||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~----~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRT----PKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS-------B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhcc----CCeECcCCcCc
Confidence 368999999999888 56899997755 33444432211 13789999763
No 97
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=84.36 E-value=0.53 Score=56.65 Aligned_cols=61 Identities=26% Similarity=0.392 Sum_probs=40.3
Q ss_pred CCCcccccCcC-CC-Cce-EcCCCCcccHHHHHHHHHcCC-CCCCCCCcCCCCCCcccccCCCce
Q 008905 109 LSVQCPICLEY-PL-CPQ-ITSCGHIFCFPCILQYLLMGD-EDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 109 ~~~~CpICle~-~~-~P~-~t~CGH~FC~~CI~~~~~~~~-~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
.+-.|-||+.. +. +|. .+.|||+|.+.|..+.++..= +..-.-....||+|..+|...-|+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHH
Confidence 35679999954 43 444 689999999999988887531 000000135899999988654443
No 98
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.89 E-value=0.63 Score=53.01 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=32.6
Q ss_pred CCcccccCcCCCCc---e-Ec---CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 110 SVQCPICLEYPLCP---Q-IT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 110 ~~~CpICle~~~~P---~-~t---~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
..+|+||.-.+..| . +. .|+|.||..||+.|........ ....|++|...|
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~---k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESE---KHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccc---cccccccHHHHh
Confidence 34555555444432 2 33 4999999999999998754322 236777776554
No 99
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.94 E-value=1.2 Score=43.73 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=40.4
Q ss_pred CCCCcccccCcCCC--CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~--~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.-...|.+|-.++. +.+.+.|-|.|.|.|+-.|...-.... ......||.|...|-
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanT-APaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANT-APAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcC-CCCcccCCCCCCccC
Confidence 34567999998775 445678999999999999887644221 112368999987653
No 100
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.19 E-value=0.62 Score=34.69 Aligned_cols=36 Identities=25% Similarity=0.697 Sum_probs=22.6
Q ss_pred CCceEcCCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 121 LCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 121 ~~P~~t~CG-H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+--...|. |-.|..|+...+... ..||+|..++..
T Consensus 11 ~~k~Li~C~dHYLCl~CLt~ml~~s---------~~C~iC~~~LPt 47 (50)
T PF03854_consen 11 ANKGLIKCSDHYLCLNCLTLMLSRS---------DRCPICGKPLPT 47 (50)
T ss_dssp --SSEEE-SS-EEEHHHHHHT-SSS---------SEETTTTEE---
T ss_pred cCCCeeeecchhHHHHHHHHHhccc---------cCCCcccCcCcc
Confidence 333466786 888999999888653 689999998753
No 101
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.28 E-value=1.9 Score=43.22 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=36.2
Q ss_pred CCCcccccCcCCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 109 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 109 ~~~~CpICle~~~~P----~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
..+.|||---++..- .+..|||+|-..-+.+.- ...|++|...+...++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-----------as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-----------ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh-----------hccccccCCcccccCe
Confidence 468899987666543 366999999988776643 2689999997766654
No 102
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=78.51 E-value=1.4 Score=46.85 Aligned_cols=40 Identities=13% Similarity=0.439 Sum_probs=28.5
Q ss_pred CCcccHHHHHHHHHcCCCCCCCC----CcCCCCCCcccccCCCc
Q 008905 129 GHIFCFPCILQYLLMGDEDYKGD----CFKRCPLCFVMISSKEL 168 (549)
Q Consensus 129 GH~FC~~CI~~~~~~~~~~~k~~----~~~~CP~Cr~~i~~~~l 168 (549)
--..|..|+-+|+...++..... ....||+||+.+...|+
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 34568999999999876443222 23699999998876554
No 103
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=77.65 E-value=0.98 Score=41.19 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=25.9
Q ss_pred CCcccccCcCCCC--ce-EcCCC------CcccHHHHHHHHH
Q 008905 110 SVQCPICLEYPLC--PQ-ITSCG------HIFCFPCILQYLL 142 (549)
Q Consensus 110 ~~~CpICle~~~~--P~-~t~CG------H~FC~~CI~~~~~ 142 (549)
..+|.||++...+ .+ .++|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6799999988766 55 34665 6799999999953
No 104
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.39 E-value=1.4 Score=50.95 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=32.9
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
...|..|-..+.-|. .-.|||.|...|+. . +...||.|..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~--------~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D--------KEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----c--------CcccCCccch
Confidence 358999999998887 56999999999986 1 1379999965
No 105
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=77.10 E-value=2.9 Score=39.22 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=35.4
Q ss_pred CCCCCcccccCcCCCCceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH-----~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
+..+..|-||.+... +...+|.. .....|+.+|+.... ...|++|....
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-------~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-------NKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-------CCcccccCCeE
Confidence 345678999997653 23456654 237899999999753 37999998765
No 106
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.58 E-value=1.3 Score=51.32 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=28.6
Q ss_pred CCCcccccCcCC-CCce-EcCCCCcccHHHHHHHHHcC
Q 008905 109 LSVQCPICLEYP-LCPQ-ITSCGHIFCFPCILQYLLMG 144 (549)
Q Consensus 109 ~~~~CpICle~~-~~P~-~t~CGH~FC~~CI~~~~~~~ 144 (549)
..-+|-+|.-++ ..|. +.+|||.|.+.||.+.....
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHHcc
Confidence 346899999764 5666 56999999999999877654
No 107
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=1.2 Score=43.86 Aligned_cols=39 Identities=26% Similarity=0.585 Sum_probs=31.0
Q ss_pred ccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 113 CPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 113 CpICle~~~~P~~t~CGH-~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
|-+|.+.-..-.++||-| ++|..|=.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------------CccCCCCcChhh
Confidence 999999888877899998 789999321 268999987653
No 108
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=71.43 E-value=0.22 Score=40.21 Aligned_cols=41 Identities=29% Similarity=0.530 Sum_probs=22.6
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
++.||.|..++.- . =||.+|..|-..|... ..||.|..++.
T Consensus 1 e~~CP~C~~~L~~-~---~~~~~C~~C~~~~~~~----------a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW-Q---GGHYHCEACQKDYKKE----------AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE-E---TTEEEETTT--EEEEE----------EE-TTT-SB-E
T ss_pred CCcCCCCCCccEE-e---CCEEECccccccceec----------ccCCCcccHHH
Confidence 3579999987431 1 1888999997765443 68999988764
No 109
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.34 E-value=4.3 Score=29.66 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=22.6
Q ss_pred ccccCcCCCCceEc---CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 113 CPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 113 CpICle~~~~P~~t---~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
|-+|.+.....+.- .|+-.+...|+..|+.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-------~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-------NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-------S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-------CCCCcCC
Confidence 66788877666643 4888899999999998743 2479987
No 110
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=70.57 E-value=2.4 Score=43.41 Aligned_cols=44 Identities=30% Similarity=0.688 Sum_probs=34.2
Q ss_pred CCCcccccCcCC----CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 109 LSVQCPICLEYP----LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 109 ~~~~CpICle~~----~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
....||||.+.+ ..|..++|||..-..|+..+... + ..||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--------~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--------G-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--------C-CCCCcccc
Confidence 355699999764 35668899999888888877654 2 79999976
No 111
>PHA02862 5L protein; Provisional
Probab=68.47 E-value=5.2 Score=36.92 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=33.5
Q ss_pred CcccccCcCCCCceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 111 VQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 111 ~~CpICle~~~~P~~t~CGH-----~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
..|=||.+.-... ..+|.. .-...|+.+|+.... ...|++|+....
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-------k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-------KKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-------CcCccCCCCeEE
Confidence 4799999764333 456654 347899999997653 479999998764
No 112
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=67.34 E-value=2.8 Score=27.36 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=11.9
Q ss_pred cccccCcC-CCCceEc-CCCCcc
Q 008905 112 QCPICLEY-PLCPQIT-SCGHIF 132 (549)
Q Consensus 112 ~CpICle~-~~~P~~t-~CGH~F 132 (549)
.||-|... +.....- .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 58888754 3333333 377765
No 113
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=64.82 E-value=4 Score=30.33 Aligned_cols=40 Identities=28% Similarity=0.687 Sum_probs=24.7
Q ss_pred ccccCcCC--CCceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 113 CPICLEYP--LCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 113 CpICle~~--~~P~~t~CGH-----~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
|-||++.- ..+.+.+|+- .....|+.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~-------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG-------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT--------SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC-------CCcCCCC
Confidence 67899643 2357788854 346789999999742 3679887
No 114
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=63.54 E-value=5.6 Score=45.89 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=40.1
Q ss_pred CCCcccccCc--CCCCceEcCCCCc-----ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 109 LSVQCPICLE--YPLCPQITSCGHI-----FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 109 ~~~~CpICle--~~~~P~~t~CGH~-----FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
+..+|-||.. ...+|..-||.+. ....|+..|+.-+. ..+|-+|..++.-+++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~-------~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG-------TKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC-------Ccceeeecceeeeeee
Confidence 4578999994 4678888787653 47789999998653 3799999988765544
No 115
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.27 E-value=5.5 Score=40.74 Aligned_cols=42 Identities=17% Similarity=0.506 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHcCCCCCC----CCCcCCCCCCcccccCCCce
Q 008905 128 CGHIFCFPCILQYLLMGDEDYK----GDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 128 CGH~FC~~CI~~~~~~~~~~~k----~~~~~~CP~Cr~~i~~~~l~ 169 (549)
|....|..|+.+|+...+++.- ...+..||+||+.+...|+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 5566789999999987553310 11357999999988766654
No 116
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.39 E-value=5.4 Score=37.96 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=37.3
Q ss_pred CCCCcccccCcCCCCce-------EcCCCCcccHHHHHHHHHcCCCC---CCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCPQ-------ITSCGHIFCFPCILQYLLMGDED---YKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~-------~t~CGH~FC~~CI~~~~~~~~~~---~k~~~~~~CP~Cr~~i~~ 165 (549)
.+-..|.||..+-.+.. -..||..|..-|+..|+..--.. ... -...||.|..++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdi-iFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDI-IFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeee-eeccCCCCCCccee
Confidence 34467999986533222 34799999999999999853211 110 13589999887653
No 117
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=61.84 E-value=7.2 Score=40.34 Aligned_cols=56 Identities=23% Similarity=0.612 Sum_probs=32.8
Q ss_pred CCCcccccCcC-CCC----------------ce--EcCCCCcccHHHHHHHHHcCC-CCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEY-PLC----------------PQ--ITSCGHIFCFPCILQYLLMGD-EDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~-~~~----------------P~--~t~CGH~FC~~CI~~~~~~~~-~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+..||+|+.. +.. |. ..+|||+ |..=-..||..-. ..+...-...||.|...+.-
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 46789999953 211 22 5689996 5554555665432 11111224689999887643
No 118
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=61.64 E-value=1.9 Score=44.86 Aligned_cols=44 Identities=20% Similarity=0.534 Sum_probs=32.6
Q ss_pred CCcccccCcCCCCceEcC----CC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 110 SVQCPICLEYPLCPQITS----CG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~----CG--H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
...||||-..|+..++.. =| +.+|..|-..|-.. ...||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~---------R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV---------RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc---------CccCCCCCCC
Confidence 458999999998776433 34 56788898888655 2699999863
No 119
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=57.98 E-value=6.5 Score=39.68 Aligned_cols=46 Identities=30% Similarity=0.481 Sum_probs=37.1
Q ss_pred CCCCCcccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 107 NPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~-t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
..-.+.|||-..+..+|++ ..|||+|=..-|..++... ....||+-
T Consensus 173 e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~-------~~i~CPv~ 219 (262)
T KOG2979|consen 173 EVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE-------ITIRCPVL 219 (262)
T ss_pred hhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC-------ceeecccc
Confidence 3446899999999999994 6899999999999888652 24788873
No 120
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=54.87 E-value=2.8 Score=43.33 Aligned_cols=59 Identities=22% Similarity=0.525 Sum_probs=36.8
Q ss_pred cCCCCCCcccccCc-CCC--Cce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 105 YSNPLSVQCPICLE-YPL--CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 105 ~~~~~~~~CpICle-~~~--~P~--~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
+...+...|.+|.- .|. .-+ .-.||++||..|-..-+....-..+ .-+.|+.|...+..
T Consensus 163 ~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k--~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 163 LPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTK--PIRVCDICFEELEK 226 (288)
T ss_pred cCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCC--CceecHHHHHHHhc
Confidence 34456789999997 443 222 5589999999997653332211111 12489999886643
No 121
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=52.41 E-value=1.9 Score=44.54 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=22.4
Q ss_pred CCcccccCcCCCCceEcCC---C--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 110 SVQCPICLEYPLCPQITSC---G--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~C---G--H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
...||||-..|...++..= | |.+|..|-..|... ...||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~---------R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV---------RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-----------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec---------CCCCcCCCCC
Confidence 4689999999887776544 4 56799998887654 2689999764
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.58 E-value=18 Score=37.82 Aligned_cols=46 Identities=28% Similarity=0.483 Sum_probs=32.9
Q ss_pred CCcccccCcCCCC--ce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPLC--PQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~~--P~--~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
...||||.++... .. -.+||+..|+.|+...... ...||.|+.+..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~---------~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG---------DGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhccccc---------CCCCCccCCccc
Confidence 4689999987632 22 3478999999998765543 379999995443
No 123
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=48.85 E-value=5.8 Score=41.41 Aligned_cols=44 Identities=20% Similarity=0.578 Sum_probs=32.4
Q ss_pred CCCcccccCcCCCCceEc---CCC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 109 LSVQCPICLEYPLCPQIT---SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t---~CG--H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
....||||-..|+..++. .=| +.+|..|-..|-... ..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R---------~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR---------VKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC---------ccCCCCCC
Confidence 357899999998877542 234 456888988876542 69999986
No 124
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=47.51 E-value=14 Score=32.39 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=32.2
Q ss_pred CCCcccccCcCCCCce--------EcCC---CCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQ--------ITSC---GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~--------~t~C---GH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
....|-.|..--.+.. ...| .-.||..||..................||.|+....
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 3456777764322211 2345 667999999887764321111112478999988543
No 126
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.69 E-value=14 Score=33.58 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=24.0
Q ss_pred cCCCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHc
Q 008905 105 YSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 143 (549)
Q Consensus 105 ~~~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~ 143 (549)
+...+..+|-||+..-.+ -.|||+ |.+|-+++-..
T Consensus 60 aGv~ddatC~IC~KTKFA---DG~GH~-C~YCq~r~CAR 94 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFA---DGCGHN-CSYCQTRFCAR 94 (169)
T ss_pred cccCcCcchhhhhhcccc---cccCcc-cchhhhhHHHh
Confidence 345678899999964322 369995 88887665544
No 127
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.71 E-value=18 Score=41.55 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=38.5
Q ss_pred cccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 112 QCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 112 ~CpICle~~~~P~~t~CGH-~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.|+||-.-+.-+..-.||| ..|..|..+...... +......||+|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~---~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELN---NRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcc---cccccccCccccccee
Confidence 5999999888888889999 999999988776543 1123467899988553
No 128
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=42.95 E-value=13 Score=36.93 Aligned_cols=43 Identities=33% Similarity=0.583 Sum_probs=35.2
Q ss_pred CCCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC
Q 008905 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 158 (549)
Q Consensus 109 ~~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~ 158 (549)
-++.|||-+.+...|. .+.|.|.|=..-|..++... ..+.||.
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~-------~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVE-------CTRVCPR 231 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCC-------ceeecch
Confidence 4689999999999998 46899999999999988743 2467774
No 129
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.46 E-value=8.3 Score=41.25 Aligned_cols=56 Identities=20% Similarity=0.449 Sum_probs=0.0
Q ss_pred CCcccccCcC--CC---------------Cce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 110 SVQCPICLEY--PL---------------CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 110 ~~~CpICle~--~~---------------~P~--~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
...||+|+.+ ++ .|. ..+|||+.-.....-|-...-..+...-...||.|..++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 6799999953 21 122 45899976555555444432211111123689999888763
No 130
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.21 E-value=13 Score=42.72 Aligned_cols=55 Identities=29% Similarity=0.492 Sum_probs=32.4
Q ss_pred CCCCCcccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCCC
Q 008905 107 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKRC 156 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~----------~t~CGH~F--------------------C~~CI~~~~~~~~~~~k~~~~~~C 156 (549)
.++...|+-|+..+.+|. +|.||-.| |..|...|......... .....|
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfH-AQp~aC 176 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFH-AQPIAC 176 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccc-cccccC
Confidence 345678999997765542 56788765 77777666543221110 013567
Q ss_pred CCCccc
Q 008905 157 PLCFVM 162 (549)
Q Consensus 157 P~Cr~~ 162 (549)
|.|.-.
T Consensus 177 p~CGP~ 182 (750)
T COG0068 177 PKCGPH 182 (750)
T ss_pred cccCCC
Confidence 777543
No 131
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.10 E-value=12 Score=40.40 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=24.9
Q ss_pred CCcccccCcCCC-----CceEcCCCCcccHHHHHHHHHc
Q 008905 110 SVQCPICLEYPL-----CPQITSCGHIFCFPCILQYLLM 143 (549)
Q Consensus 110 ~~~CpICle~~~-----~P~~t~CGH~FC~~CI~~~~~~ 143 (549)
-..||+|.-... +-++-.|||-||+.|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 468999996543 2233359999999999887765
No 132
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=40.74 E-value=17 Score=41.87 Aligned_cols=55 Identities=29% Similarity=0.595 Sum_probs=38.5
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
.+.|||+..-+.-|. -..|.|+=|+.-.. |+...++ .....||+|...+...+|.
T Consensus 306 SL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~----~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQ----KPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred EecCCcccceeecCCcccccccceecchhh-hHHhccC----CCeeeCccCCccccccchh
Confidence 578999987665554 66899998888654 3433221 2357899999888776664
No 133
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.44 E-value=19 Score=27.20 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=23.5
Q ss_pred CcccccCcCCCC----ceEcCCCCcccHHHHHHHHHc
Q 008905 111 VQCPICLEYPLC----PQITSCGHIFCFPCILQYLLM 143 (549)
Q Consensus 111 ~~CpICle~~~~----P~~t~CGH~FC~~CI~~~~~~ 143 (549)
..|.+|...|.. .....||++||..|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 468899865432 225689999999998765543
No 134
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.08 E-value=30 Score=37.52 Aligned_cols=54 Identities=30% Similarity=0.416 Sum_probs=46.4
Q ss_pred cccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEee
Q 008905 112 QCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 174 (549)
Q Consensus 112 ~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~~ 174 (549)
.|.|--+.|..|++. .-||+|=..-|.+|+... .+||+-.+++...+|.++...
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~---------G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET---------GKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHc---------CCCCCCCCcCCHHHeeecccc
Confidence 599999999999964 689999999999999863 689999999998888876553
No 135
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=37.65 E-value=7.5 Score=30.84 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=15.7
Q ss_pred CCCcccccCcCCCC--ce--EcCCCCcccHHHHHH
Q 008905 109 LSVQCPICLEYPLC--PQ--ITSCGHIFCFPCILQ 139 (549)
Q Consensus 109 ~~~~CpICle~~~~--P~--~t~CGH~FC~~CI~~ 139 (549)
+...|.+|...|.- .. --.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 45789999987742 22 457999999988654
No 136
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=37.44 E-value=18 Score=27.37 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=8.9
Q ss_pred CCcccccCcCCC
Q 008905 110 SVQCPICLEYPL 121 (549)
Q Consensus 110 ~~~CpICle~~~ 121 (549)
.+.||.|...+.
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 578999988443
No 137
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.00 E-value=23 Score=28.80 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=25.9
Q ss_pred eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 124 QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 124 ~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
++-.=-|.||..|....+. ..||.|...+..+.+++
T Consensus 23 ~ICtfEcTFCadCae~~l~-----------g~CPnCGGelv~RP~RP 58 (84)
T COG3813 23 RICTFECTFCADCAENRLH-----------GLCPNCGGELVARPIRP 58 (84)
T ss_pred eEEEEeeehhHhHHHHhhc-----------CcCCCCCchhhcCcCCh
Confidence 3333357899999876553 58999998877666654
No 138
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.97 E-value=13 Score=43.29 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=25.8
Q ss_pred CCcccccCcCCCC--ceEcCCCCcccHHHHHHHH
Q 008905 110 SVQCPICLEYPLC--PQITSCGHIFCFPCILQYL 141 (549)
Q Consensus 110 ~~~CpICle~~~~--P~~t~CGH~FC~~CI~~~~ 141 (549)
...|-.|.....+ =+...||+.+|..|+..|.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 4679999976554 4477999999999999885
No 139
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.68 E-value=33 Score=26.64 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=29.0
Q ss_pred CcccccCcC-CCC---ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 111 VQCPICLEY-PLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 111 ~~CpICle~-~~~---P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
..|-.|-.. +.+ +.+-+=-.+||..|....+. ..||.|...+..+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-----------~~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-----------GVCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-----------CcCcCCCCccccCC
Confidence 356666643 222 23323234899999988773 58999988765543
No 140
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=35.26 E-value=19 Score=35.35 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=35.5
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
-..|-+|.......+ .-.||--|...|+..|+... ..||.|..-.
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~---------~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRR---------DICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhccc---------CcCCchhccc
Confidence 357999998766554 67888888999999999872 6899996543
No 141
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.05 E-value=64 Score=25.96 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred cCCCceEEEEEecCCC-CCChhhHhhhHHHHHHHHHHH
Q 008905 494 FSLTTTFQLCEIDLTE-ALPPDALSPFIDEIRKREKQR 530 (549)
Q Consensus 494 LPl~~~~~f~EiDl~~-~V~~e~L~~F~~eL~kR~k~R 530 (549)
.|+|..|-+=|+|=+. +|.+++++.-+.||+++..+.
T Consensus 27 m~~~skfii~eLDdthLfV~p~~vemvk~~le~~le~n 64 (71)
T KOG3451|consen 27 MQLGSKFIIEELDDTHLFVNPSIVEMVKNELERILENN 64 (71)
T ss_pred CCCCCCeeEEEeccceeeecHHHHHHHHHHHHHHHHhc
Confidence 4899999999999988 688999999999999887653
No 142
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=32.55 E-value=19 Score=39.14 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.0
Q ss_pred CCCCCcccccCcCCCCce----EcCCCCcccHHHHH
Q 008905 107 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCIL 138 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~----~t~CGH~FC~~CI~ 138 (549)
..+...||+|-..|.-.+ .--||-+.|..|..
T Consensus 177 Ds~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k 212 (505)
T KOG1842|consen 177 DSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSK 212 (505)
T ss_pred CCcccccccccchhhhHHHhhhhhhcchHHHHHHHH
Confidence 445678999999886443 55699999999964
No 143
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.15 E-value=15 Score=39.33 Aligned_cols=50 Identities=28% Similarity=0.575 Sum_probs=0.4
Q ss_pred CCCCCcccccCcCCCCc--------------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 107 NPLSVQCPICLEYPLCP--------------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P--------------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
.....+||+=|..+.-| +.+.|||++-+- .|-..... ....+.||+|+..
T Consensus 274 Na~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~---~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 274 NAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDR---DPRSRTCPLCRQV 337 (416)
T ss_dssp S---------------------------------------------------------------------
T ss_pred hhcCCCCCcCCCccccccccccccccccCceeeccccceeeec---cccccccc---ccccccCCCcccc
Confidence 44567899988765432 246799998653 34332211 1125899999874
No 144
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=32.02 E-value=29 Score=35.59 Aligned_cols=43 Identities=21% Similarity=0.564 Sum_probs=31.5
Q ss_pred CCcccccCcCCCCceEc----CCCCc--ccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 110 SVQCPICLEYPLCPQIT----SCGHI--FCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t----~CGH~--FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
..-||+|-..|+..++. .=|-. -|.-|...|..-. .+|-.|..
T Consensus 185 ~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR---------~KC~nC~~ 233 (308)
T COG3058 185 RQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVR---------VKCSNCEQ 233 (308)
T ss_pred cccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHH---------HHhccccc
Confidence 35899999999887743 23333 3889999998763 58988855
No 145
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.42 E-value=9.1 Score=39.39 Aligned_cols=44 Identities=34% Similarity=0.678 Sum_probs=34.2
Q ss_pred CcccccCcCCC------CceEcC--------CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 111 VQCPICLEYPL------CPQITS--------CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 111 ~~CpICle~~~------~P~~t~--------CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
..|.||...+. .|.+.. |||..|..|+...+.... ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~--------~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG--------IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh--------hcCCcccce
Confidence 55999986543 466766 999999999999887632 789999764
No 146
>PF15616 TerY-C: TerY-C metal binding domain
Probab=30.45 E-value=29 Score=31.75 Aligned_cols=41 Identities=29% Similarity=0.570 Sum_probs=29.2
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
....||-|-...--.+. .||++||+. +. ....||-|.....
T Consensus 76 g~PgCP~CGn~~~fa~C-~CGkl~Ci~--------g~------~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 76 GAPGCPHCGNQYAFAVC-GCGKLFCID--------GE------GEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCCcChhcEEEe-cCCCEEEeC--------CC------CCEECCCCCCeee
Confidence 34789999976554444 899999963 11 2489999987543
No 147
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=30.43 E-value=4.6 Score=35.01 Aligned_cols=47 Identities=28% Similarity=0.594 Sum_probs=15.7
Q ss_pred CcccccCcCC--CCceEcCC--CCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 111 VQCPICLEYP--LCPQITSC--GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 111 ~~CpICle~~--~~P~~t~C--GH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
-.|+||...+ .++....| ||+| ..|.+.++.-... ..+.|++|...+
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~-----~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTP-----GVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS------EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccC-----CeeEcCCCCCEE
Confidence 5799999754 45555656 7886 4566665554321 247899997643
No 148
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=30.43 E-value=23 Score=37.85 Aligned_cols=34 Identities=26% Similarity=0.772 Sum_probs=24.4
Q ss_pred CCcccccCc-CCCCc-eEcCCCCcccHHHHHHHHHc
Q 008905 110 SVQCPICLE-YPLCP-QITSCGHIFCFPCILQYLLM 143 (549)
Q Consensus 110 ~~~CpICle-~~~~P-~~t~CGH~FC~~CI~~~~~~ 143 (549)
...||||+- ++.+- .+.-|.-..|..|+..+-..
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~ 109 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFGCY 109 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheecccCC
Confidence 368999995 45533 35568889999998876543
No 149
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.16 E-value=84 Score=33.78 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=55.9
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeecccccCCCCceEEEE
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAVGDTIEFML 189 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~~~~~~~~~g~~v~l~L 189 (549)
-..|.+-+-++..|+++.-|-+|=+.-|..|+..- ..=|+-.+++..++|..+.+..-..-.-...|.|+.
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~---------g~nP~tG~kl~~~dLIkL~F~Kns~geyhcPvlfk~ 110 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH---------GTNPITGQKLDGKDLIKLKFHKNSEGEYHCPVLFKV 110 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHHc---------CCCCCCCCccccccceeeeeccCCCCcccCceeeee
Confidence 35688889999999999999999999999999862 456777888888888877665433222334566666
Q ss_pred eecC
Q 008905 190 LIRE 193 (549)
Q Consensus 190 ~~R~ 193 (549)
..+.
T Consensus 111 FT~~ 114 (518)
T KOG0883|consen 111 FTRF 114 (518)
T ss_pred eccc
Confidence 6543
No 150
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.81 E-value=17 Score=34.19 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=18.3
Q ss_pred CCCCCcccccCcCCCCce---EcCCCCccc
Q 008905 107 NPLSVQCPICLEYPLCPQ---ITSCGHIFC 133 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~---~t~CGH~FC 133 (549)
..+.-+|-|||+.+...- .++|-.||.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEee
Confidence 445678999998776433 467876664
No 151
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=29.17 E-value=30 Score=36.01 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=27.3
Q ss_pred CCCcccccCcCCCCc--------------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 109 LSVQCPICLEYPLCP--------------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 109 ~~~~CpICle~~~~P--------------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
...+||+=|..+.-| +.+.|||+--.- .|=.. + ..+.....||+|+.
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~-e--~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NWGVR-E--NTGQRERECPMCRV 349 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEecccccccc---ccccc-c--ccCcccCcCCeeee
Confidence 457899988765433 256799975321 11111 1 12223589999976
No 152
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.96 E-value=15 Score=41.76 Aligned_cols=65 Identities=22% Similarity=0.467 Sum_probs=42.1
Q ss_pred CCCcCcCCcchhhhhhhcCCCCCCcccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 88 SMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 88 ~~dpd~~v~w~~i~~v~~~~~~~~~CpICle~~~~----P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
..+.++..+|.+ ...|-.|...|.. -.+..||-+||..|....+....- +...-.+.|-.|.+.+
T Consensus 153 mf~~~~~pdW~D----------~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~-Gi~~~VRVCd~C~E~l 221 (634)
T KOG1818|consen 153 MFDAETAPDWID----------SEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKL-GIEKPVRVCDSCYELL 221 (634)
T ss_pred hhcccCCccccc----------ccccceeeeeeeeccccccccccchhhccCccccccCcccc-cccccceehhhhHHHh
Confidence 445566667743 4578888876642 126689999999998877765431 1111247899995544
No 153
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.83 E-value=32 Score=39.76 Aligned_cols=21 Identities=29% Similarity=0.814 Sum_probs=18.4
Q ss_pred EcCCCCcccHHHHHHHHHcCC
Q 008905 125 ITSCGHIFCFPCILQYLLMGD 145 (549)
Q Consensus 125 ~t~CGH~FC~~CI~~~~~~~~ 145 (549)
...|||+....|...|+..+.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred hccccccccHHHHHHHHhcCC
Confidence 457999999999999999864
No 154
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.71 E-value=30 Score=31.36 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=21.3
Q ss_pred CCcchhhhhhhcCCCCCCcccccCcCCCCceEcCCCCcccHH
Q 008905 94 MLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFP 135 (549)
Q Consensus 94 ~v~w~~i~~v~~~~~~~~~CpICle~~~~P~~t~CGH~FC~~ 135 (549)
.++|++-+.+. -.-.-=||.+.-..-....|||.||..
T Consensus 45 rv~~~dpillp----vg~hlfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 45 RVDWDDPILLP----VGDHLFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred hcccCCCeeee----cCCcEEEEecccccEEEEeccccccCh
Confidence 45666654322 222234666655553456899999864
No 155
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.24 E-value=38 Score=27.13 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=8.6
Q ss_pred cccHHHHHHHHHc
Q 008905 131 IFCFPCILQYLLM 143 (549)
Q Consensus 131 ~FC~~CI~~~~~~ 143 (549)
.||..||..|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3888888888875
No 156
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=26.36 E-value=37 Score=29.02 Aligned_cols=36 Identities=31% Similarity=0.660 Sum_probs=26.9
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i 163 (549)
...|-||-.-...+ ||.||..|-.. ...|.+|...+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-------------kGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-------------KGICAMCGKKI 79 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-------------cCcccccCCee
Confidence 34799998766554 88999999421 25899998876
No 157
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=25.95 E-value=36 Score=39.76 Aligned_cols=56 Identities=29% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCCCCcccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCCC
Q 008905 107 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKRC 156 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~----------~t~CGH~F--------------------C~~CI~~~~~~~~~~~k~~~~~~C 156 (549)
.++-..|+-|+..+.+|. +|.||-.| |..|...|....... -......|
T Consensus 65 ppD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr-~h~~~~~C 143 (711)
T TIGR00143 65 PADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRR-FHAQPIAC 143 (711)
T ss_pred CCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCcccc-CCCCCccC
Confidence 445667999997665542 56777665 888888876542211 11123678
Q ss_pred CCCcccc
Q 008905 157 PLCFVMI 163 (549)
Q Consensus 157 P~Cr~~i 163 (549)
|.|.-.+
T Consensus 144 ~~Cgp~l 150 (711)
T TIGR00143 144 PRCGPQL 150 (711)
T ss_pred CCCCcEE
Confidence 8886655
No 158
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.70 E-value=45 Score=40.00 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=38.0
Q ss_pred CCCcccccCcCCCCceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEee
Q 008905 109 LSVQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 174 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH-----~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~~ 174 (549)
....||-|-.......+-.||. .||..|-.. . ....||-|...+.....+.+-+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~--~---------~~y~CPKCG~El~~~s~~~i~l~ 684 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE--V---------EEDECEKCGREPTPYSKRKIDLK 684 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc--C---------CCCcCCCCCCCCCccceEEecHH
Confidence 4578999998766666777984 599999211 0 12579999988876665555443
No 159
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=25.31 E-value=27 Score=39.57 Aligned_cols=40 Identities=23% Similarity=0.545 Sum_probs=25.7
Q ss_pred CCCcccccCc-CCCCce-------EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 008905 109 LSVQCPICLE-YPLCPQ-------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (549)
Q Consensus 109 ~~~~CpICle-~~~~P~-------~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr 160 (549)
..+.|.||.. .+.-|. ...||++|...|+.+ ....||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r------------~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR------------KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc------------cCCCCCchH
Confidence 4577888863 222222 457999999999754 125599993
No 160
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.32 E-value=45 Score=38.21 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=27.6
Q ss_pred CcccccCcC----CCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 008905 111 VQCPICLEY----PLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 111 ~~CpICle~----~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~ 161 (549)
..|-+|..+ ..-++.+.|+-.||+.|-..+- ..||+|.-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~------------~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYA------------SISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhhh------------ccCcccCc
Confidence 357788743 2345577899999999965542 46999953
No 161
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.10 E-value=7.9 Score=41.19 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=38.5
Q ss_pred CCcccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 110 SVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 110 ~~~CpICle~~~~----P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
.-+|.||...+.. -.-+.|||++...||..|+... .+||.|+..+....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~---------~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATK---------RKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH---------HHhHHHHhhhhhhh
Confidence 4579999976643 2367899999999999999872 68999988776543
No 162
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=23.07 E-value=24 Score=38.66 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=20.2
Q ss_pred CCCcccccCcCCCCce----EcCCCCcccHHH
Q 008905 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPC 136 (549)
Q Consensus 109 ~~~~CpICle~~~~P~----~t~CGH~FC~~C 136 (549)
....|-.|..+|.+-+ +..||-+||..|
T Consensus 900 ~a~~cmacq~pf~afrrrhhcrncggifcg~c 931 (990)
T KOG1819|consen 900 DAEQCMACQMPFNAFRRRHHCRNCGGIFCGKC 931 (990)
T ss_pred cchhhhhccCcHHHHHHhhhhcccCceeeccc
Confidence 4456777777765432 668999999887
No 163
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=22.66 E-value=64 Score=29.20 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=37.3
Q ss_pred cccccCCCceEEEEEecCCCCCChhhHhhhHHHHHHHHHHHHHHHhhhhhhhhhhhccCC
Q 008905 490 YLSHFSLTTTFQLCEIDLTEALPPDALSPFIDEIRKREKQRKQLANKSHTVLISRSGRRK 549 (549)
Q Consensus 490 yLsHLPl~~~~~f~EiDl~~~V~~e~L~~F~~eL~kR~k~R~~k~r~E~k~~~~~~~~~~ 549 (549)
|++|+| -+.|..+.+++.|+-+++-...|.+.|.+.-+.-++.-+- ++.-.+-||-||
T Consensus 45 l~~~~~-~~~i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~-~~lh~~iaGGRK 102 (124)
T TIGR03642 45 LLKKFY-KAEVHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGC-ERIIVNISGGRK 102 (124)
T ss_pred hHHhcC-CcEEEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCc-ceEEEEecCCHH
Confidence 344555 3667777788999999999999999876654433321111 145556666665
No 164
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=22.43 E-value=62 Score=30.53 Aligned_cols=34 Identities=26% Similarity=0.662 Sum_probs=25.4
Q ss_pred CCceEEEecCCCCcee--echhcHHHHHHhhCCCCCCCccceeeE
Q 008905 430 KDSYNFYQAIDGQHLI--LHPLNLKCLLHHYGSYDMLPHRISGRI 472 (549)
Q Consensus 430 ~~~yyFYQa~dgq~if--LhPLdiKiL~~~fGsy~~~P~~I~~kV 472 (549)
...||.|+-.+|+.|| |+| .++|. .+|....|..
T Consensus 93 G~iYhLY~r~~G~~ylSmisP-------~EWg~--~~p~~flGsy 128 (159)
T PF10504_consen 93 GQIYHLYRRENGQDYLSMISP-------EEWGG--SCPHEFLGSY 128 (159)
T ss_pred CCEEEEEECCCCCEEEEeeCH-------HHhCC--CCCcCEEEEE
Confidence 3679999999999875 555 56776 6777666654
No 165
>PF15348 GEMIN8: Gemini of Cajal bodies-associated protein 8
Probab=22.01 E-value=1e+02 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=21.2
Q ss_pred EEecCCCC-CChhhHhhhHHHHHHHHHHHHHHHhh
Q 008905 503 CEIDLTEA-LPPDALSPFIDEIRKREKQRKQLANK 536 (549)
Q Consensus 503 ~EiDl~~~-V~~e~L~~F~~eL~kR~k~R~~k~r~ 536 (549)
+|||+..+ |+.|-++-|+.--+.|+.++++++.+
T Consensus 97 ~~~d~~~~eiteEl~qfFa~TerHRee~~~qrq~e 131 (209)
T PF15348_consen 97 VECDESNMEITEELRQFFAQTERHREERKRQRQLE 131 (209)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888885 56666676776556565555544433
No 166
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=21.63 E-value=1.4e+02 Score=25.05 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.0
Q ss_pred EEEe--cCCCCCChhhHhhhHHHHHHHHHHH
Q 008905 502 LCEI--DLTEALPPDALSPFIDEIRKREKQR 530 (549)
Q Consensus 502 f~Ei--Dl~~~V~~e~L~~F~~eL~kR~k~R 530 (549)
+||| |=+..+|+-+++.+..||.||-.++
T Consensus 2 rVEi~~dK~~~lp~ga~~AL~~EL~kRl~~~ 32 (81)
T PRK10597 2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYA 32 (81)
T ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHhh
Confidence 3565 6567899999999999999998776
No 167
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.02 E-value=45 Score=38.78 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=24.0
Q ss_pred CcccccCcCCCC-------ce--EcCCCCcccHHHHHHHHH
Q 008905 111 VQCPICLEYPLC-------PQ--ITSCGHIFCFPCILQYLL 142 (549)
Q Consensus 111 ~~CpICle~~~~-------P~--~t~CGH~FC~~CI~~~~~ 142 (549)
..|..|...+.- -+ .-.||.+||..|-.....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~ 501 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAH 501 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCccc
Confidence 579999988742 11 568999999999865543
No 168
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.40 E-value=1e+02 Score=27.41 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=28.6
Q ss_pred CcccccCcCCCCc-e-------------EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 008905 111 VQCPICLEYPLCP-Q-------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (549)
Q Consensus 111 ~~CpICle~~~~P-~-------------~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr 160 (549)
..|--|+..+..+ . ...|++.||..|=.-+.+. -..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~---------Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES---------LHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh---------ccCCcCCC
Confidence 4598998876543 1 4579999999995544333 26899985
No 169
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.27 E-value=28 Score=38.18 Aligned_cols=49 Identities=31% Similarity=0.526 Sum_probs=36.4
Q ss_pred hcCCCCCCccccc-CcCCCCceEc--CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 104 RYSNPLSVQCPIC-LEYPLCPQIT--SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 104 ~~~~~~~~~CpIC-le~~~~P~~t--~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
....++...|++| ...+....++ -|.-+||-.||...+.. ..|+.|...
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~----------~~~~~c~~~ 264 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS----------KSMCVCGAS 264 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc----------ccCCcchhh
Confidence 3456678999999 6777777765 58899999999877654 466666543
Done!