Query 008905
Match_columns 549
No_of_seqs 306 out of 1661
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:26:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.3 4.4E-12 1.5E-16 103.2 5.6 56 107-170 5-60 (78)
2 1g25_A CDK-activating kinase a 99.2 5.9E-12 2E-16 99.0 4.4 57 109-173 2-63 (65)
3 3ng2_A RNF4, snurf, ring finge 99.2 3.9E-12 1.3E-16 101.4 3.0 57 107-172 7-70 (71)
4 2ecy_A TNF receptor-associated 99.2 8.6E-12 3E-16 98.3 4.3 53 108-168 13-65 (66)
5 2ysl_A Tripartite motif-contai 99.2 1.3E-11 4.6E-16 98.9 4.9 55 108-168 18-72 (73)
6 2kr4_A Ubiquitin conjugation f 99.2 1.7E-11 5.7E-16 102.1 5.4 56 107-171 11-66 (85)
7 3lrq_A E3 ubiquitin-protein li 99.2 8.9E-12 3E-16 106.7 3.8 55 109-171 21-76 (100)
8 2xeu_A Ring finger protein 4; 99.2 8.2E-12 2.8E-16 97.2 2.8 55 109-172 2-63 (64)
9 2djb_A Polycomb group ring fin 99.2 2.6E-11 8.8E-16 97.3 5.4 53 109-170 14-67 (72)
10 3ztg_A E3 ubiquitin-protein li 99.2 2.7E-11 9.2E-16 101.7 5.7 56 108-170 11-68 (92)
11 2kre_A Ubiquitin conjugation f 99.2 2E-11 6.9E-16 104.7 4.9 56 107-171 26-81 (100)
12 1jm7_A BRCA1, breast cancer ty 99.1 1.2E-11 4E-16 107.5 2.6 69 95-169 6-74 (112)
13 2yur_A Retinoblastoma-binding 99.1 2.8E-11 9.4E-16 97.8 4.6 51 108-165 13-64 (74)
14 2ecw_A Tripartite motif-contai 99.1 6.5E-11 2.2E-15 97.2 6.4 60 108-170 17-76 (85)
15 1wgm_A Ubiquitin conjugation f 99.1 4.4E-11 1.5E-15 102.2 5.3 56 107-171 19-75 (98)
16 2csy_A Zinc finger protein 183 99.1 6.5E-11 2.2E-15 97.1 5.7 47 109-164 14-60 (81)
17 2ct2_A Tripartite motif protei 99.1 6E-11 2.1E-15 98.4 5.6 56 108-169 13-72 (88)
18 3fl2_A E3 ubiquitin-protein li 99.1 4.5E-11 1.5E-15 106.1 5.1 53 109-169 51-104 (124)
19 2egp_A Tripartite motif-contai 99.1 1.3E-11 4.4E-16 100.4 1.3 61 108-170 10-70 (79)
20 2y43_A E3 ubiquitin-protein li 99.1 2.8E-11 9.4E-16 103.2 3.0 53 109-170 21-74 (99)
21 2d8t_A Dactylidin, ring finger 99.1 1.8E-11 6.3E-16 97.9 1.7 51 109-168 14-64 (71)
22 4ayc_A E3 ubiquitin-protein li 99.1 3.4E-11 1.2E-15 109.0 3.5 47 109-164 52-98 (138)
23 2ysj_A Tripartite motif-contai 99.1 9.4E-11 3.2E-15 91.4 5.5 46 108-159 18-63 (63)
24 2ecv_A Tripartite motif-contai 99.1 8.2E-11 2.8E-15 96.6 5.2 60 108-170 17-76 (85)
25 2c2l_A CHIP, carboxy terminus 99.0 8.8E-11 3E-15 117.5 4.9 57 107-171 205-261 (281)
26 1z6u_A NP95-like ring finger p 99.0 1.3E-10 4.3E-15 107.0 5.2 53 109-169 77-130 (150)
27 2ea6_A Ring finger protein 4; 99.0 8.7E-11 3E-15 92.7 3.4 49 108-165 13-68 (69)
28 2yu4_A E3 SUMO-protein ligase 99.0 1.3E-10 4.5E-15 98.4 4.7 61 107-170 4-68 (94)
29 2f42_A STIP1 homology and U-bo 99.0 1.6E-10 5.5E-15 109.0 5.0 58 106-171 102-159 (179)
30 2ckl_A Polycomb group ring fin 99.0 1.7E-10 5.9E-15 99.8 4.5 48 109-165 14-62 (108)
31 3hct_A TNF receptor-associated 99.0 1.6E-10 5.5E-15 101.8 4.3 56 107-170 15-70 (118)
32 1jm7_B BARD1, BRCA1-associated 99.0 3.9E-11 1.3E-15 105.6 0.3 69 90-169 2-71 (117)
33 2ecj_A Tripartite motif-contai 99.0 2.9E-10 1E-14 86.7 4.4 46 108-159 13-58 (58)
34 2ckl_B Ubiquitin ligase protei 99.0 7.8E-11 2.7E-15 109.8 1.3 49 109-165 53-102 (165)
35 2ect_A Ring finger protein 126 99.0 2.4E-10 8.1E-15 92.9 3.9 53 109-170 14-69 (78)
36 1rmd_A RAG1; V(D)J recombinati 99.0 3.4E-10 1.2E-14 99.1 4.5 54 109-170 22-75 (116)
37 2ecm_A Ring finger and CHY zin 99.0 4.2E-10 1.4E-14 84.9 4.4 48 108-164 3-54 (55)
38 1e4u_A Transcriptional repress 98.9 4.7E-10 1.6E-14 91.8 4.6 53 108-168 9-65 (78)
39 1chc_A Equine herpes virus-1 r 98.9 4.6E-10 1.6E-14 88.6 4.2 48 108-164 3-51 (68)
40 3l11_A E3 ubiquitin-protein li 98.9 9.4E-11 3.2E-15 102.6 0.1 48 109-164 14-61 (115)
41 4ap4_A E3 ubiquitin ligase RNF 98.9 3.2E-10 1.1E-14 100.7 3.0 57 108-173 5-68 (133)
42 2kiz_A E3 ubiquitin-protein li 98.9 9.7E-10 3.3E-14 87.0 5.4 49 108-165 12-63 (69)
43 3htk_C E3 SUMO-protein ligase 98.9 5.7E-10 1.9E-14 110.4 3.8 57 107-170 178-237 (267)
44 2l0b_A E3 ubiquitin-protein li 98.9 7.7E-10 2.6E-14 92.9 4.0 48 109-165 39-89 (91)
45 1x4j_A Ring finger protein 38; 98.9 6.5E-10 2.2E-14 89.7 3.3 49 108-165 21-72 (75)
46 3knv_A TNF receptor-associated 98.9 3.9E-10 1.4E-14 102.6 2.1 52 107-166 28-79 (141)
47 1iym_A EL5; ring-H2 finger, ub 98.9 8.9E-10 3E-14 83.2 3.6 48 108-164 3-54 (55)
48 2ecn_A Ring finger protein 141 98.9 3.3E-10 1.1E-14 90.0 1.1 50 108-167 13-62 (70)
49 1v87_A Deltex protein 2; ring- 98.9 1.5E-09 5E-14 94.6 4.8 53 109-165 24-94 (114)
50 2ep4_A Ring finger protein 24; 98.9 1.4E-09 4.9E-14 87.3 4.2 49 108-165 13-64 (74)
51 1bor_A Transcription factor PM 98.8 7.1E-10 2.4E-14 84.7 1.4 46 108-165 4-49 (56)
52 4ap4_A E3 ubiquitin ligase RNF 98.8 1.2E-09 4.3E-14 96.9 3.0 58 107-173 69-133 (133)
53 3hcs_A TNF receptor-associated 98.8 1.9E-09 6.5E-14 100.8 4.3 56 107-170 15-70 (170)
54 2bay_A PRE-mRNA splicing facto 98.7 3.9E-09 1.3E-13 82.2 3.4 55 110-173 3-58 (61)
55 2y1n_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 111.0 3.9 51 109-167 331-381 (389)
56 2vje_A E3 ubiquitin-protein li 98.7 1.1E-08 3.6E-13 80.3 3.7 48 108-164 6-56 (64)
57 2ecl_A Ring-box protein 2; RNF 98.7 1.1E-08 3.8E-13 84.0 3.7 48 109-165 14-76 (81)
58 4ic3_A E3 ubiquitin-protein li 98.6 5.9E-09 2E-13 84.1 1.4 44 109-165 23-67 (74)
59 2vje_B MDM4 protein; proto-onc 98.6 1.8E-08 6.1E-13 78.8 3.0 47 109-164 6-55 (63)
60 2ecg_A Baculoviral IAP repeat- 98.6 2.7E-08 9.2E-13 80.3 4.1 44 109-165 24-68 (75)
61 1wim_A KIAA0161 protein; ring 98.5 3.5E-08 1.2E-12 83.2 1.4 60 108-168 3-69 (94)
62 2ea5_A Cell growth regulator w 98.5 1.2E-07 4.1E-12 75.3 4.4 45 108-165 13-58 (68)
63 3dpl_R Ring-box protein 1; ubi 98.5 9.7E-08 3.3E-12 82.5 4.2 47 109-164 36-100 (106)
64 2yho_A E3 ubiquitin-protein li 98.4 1.3E-07 4.6E-12 77.2 3.0 44 109-165 17-61 (79)
65 3t6p_A Baculoviral IAP repeat- 98.2 2.6E-07 8.9E-12 95.9 1.8 43 109-164 294-337 (345)
66 4a0k_B E3 ubiquitin-protein li 98.2 3.1E-07 1.1E-11 80.7 0.6 46 110-164 48-111 (117)
67 2d8s_A Cellular modulator of i 98.1 2.2E-06 7.4E-11 70.2 4.4 51 108-165 13-70 (80)
68 3vk6_A E3 ubiquitin-protein li 97.7 2.2E-05 7.7E-10 66.1 3.9 45 112-164 3-48 (101)
69 2ct0_A Non-SMC element 1 homol 97.5 7.8E-05 2.7E-09 60.0 4.9 48 110-164 15-63 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00018 6.3E-09 55.4 3.7 50 108-164 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.1 9.3E-05 3.2E-09 75.7 1.0 56 109-164 307-372 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.01 3.5E-07 49.8 3.0 33 109-141 2-37 (101)
73 3nw0_A Non-structural maintena 93.5 0.058 2E-06 52.8 4.6 49 109-164 179-228 (238)
74 3m62_A Ubiquitin conjugation f 93.2 0.06 2E-06 62.1 4.7 58 105-171 886-944 (968)
75 2cs3_A Protein C14ORF4, MY039 88.1 0.24 8.3E-06 39.7 2.3 36 109-144 14-53 (93)
76 2ko5_A Ring finger protein Z; 88.0 0.24 8E-06 41.1 2.3 47 109-166 27-74 (99)
77 3i2d_A E3 SUMO-protein ligase 86.4 0.57 1.9E-05 48.5 4.6 53 110-169 249-304 (371)
78 4fo9_A E3 SUMO-protein ligase 83.6 0.89 3.1E-05 46.8 4.6 53 110-169 215-270 (360)
79 3mpx_A FYVE, rhogef and PH dom 70.7 0.87 3E-05 47.7 0.0 54 109-164 374-431 (434)
80 1z2q_A LM5-1; membrane protein 64.1 3.8 0.00013 33.1 2.6 33 107-139 18-54 (84)
81 1joc_A EEA1, early endosomal a 60.4 2.5 8.7E-05 36.8 1.0 31 109-139 68-102 (125)
82 1x4u_A Zinc finger, FYVE domai 58.8 4.8 0.00016 32.4 2.3 32 107-138 11-46 (84)
83 2yw8_A RUN and FYVE domain-con 58.6 4 0.00014 32.8 1.8 33 107-139 16-52 (82)
84 1wfk_A Zinc finger, FYVE domai 55.7 4.2 0.00014 33.2 1.4 31 108-138 7-41 (88)
85 3t7l_A Zinc finger FYVE domain 55.2 5.3 0.00018 32.7 2.0 31 109-139 19-53 (90)
86 3zyq_A Hepatocyte growth facto 51.0 7 0.00024 37.5 2.4 29 111-139 165-197 (226)
87 3mjh_B Early endosome antigen 50.3 2.7 9.1E-05 28.3 -0.5 17 108-124 3-19 (34)
88 1y02_A CARP2, FYVE-ring finger 49.6 5.3 0.00018 34.6 1.2 29 110-138 19-51 (120)
89 1vfy_A Phosphatidylinositol-3- 48.6 7.9 0.00027 30.3 1.9 28 111-138 12-43 (73)
90 1dvp_A HRS, hepatocyte growth 48.4 5 0.00017 38.2 0.9 28 111-138 162-193 (220)
91 4g9i_A Hydrogenase maturation 42.4 11 0.00036 42.9 2.5 57 107-164 103-189 (772)
92 3ttc_A HYPF, transcriptional r 40.5 12 0.00039 41.8 2.4 57 106-163 13-99 (657)
93 2fiy_A Protein FDHE homolog; F 39.9 2.3 7.9E-05 43.0 -3.1 45 109-162 181-231 (309)
94 1wil_A KIAA1045 protein; ring 37.5 48 0.0016 26.9 4.9 53 108-160 13-74 (89)
95 3vth_A Hydrogenase maturation 36.6 13 0.00043 42.2 1.9 56 107-163 108-193 (761)
96 2d8v_A Zinc finger FYVE domain 35.5 21 0.00073 27.5 2.4 33 109-142 7-40 (67)
97 2jne_A Hypothetical protein YF 34.9 1.6 5.3E-05 36.4 -4.3 42 109-164 31-72 (101)
98 1wd2_A Ariadne-1 protein homol 34.4 4.4 0.00015 30.7 -1.6 33 110-142 6-46 (60)
99 2rgt_A Fusion of LIM/homeobox 30.9 45 0.0015 29.8 4.4 48 109-167 32-79 (169)
100 1z60_A TFIIH basal transcripti 30.5 21 0.0007 27.0 1.6 40 111-159 16-58 (59)
101 1m3v_A FLIN4, fusion of the LI 29.3 27 0.00093 29.6 2.4 49 110-167 32-83 (122)
102 1weo_A Cellulose synthase, cat 28.1 94 0.0032 25.4 5.2 48 109-164 15-69 (93)
103 2lri_C Autoimmune regulator; Z 27.6 52 0.0018 25.1 3.5 49 109-162 11-59 (66)
104 2ct7_A Ring finger protein 31; 27.4 25 0.00087 28.1 1.8 14 127-140 48-61 (86)
105 2xqn_T Testin, TESS; metal-bin 25.5 47 0.0016 28.0 3.2 47 109-166 29-76 (126)
106 2jtn_A LIM domain-binding prot 24.1 44 0.0015 30.3 3.0 48 109-167 86-133 (182)
107 2lbm_A Transcriptional regulat 22.9 47 0.0016 29.5 2.8 46 110-161 63-116 (142)
108 3c5k_A HD6, histone deacetylas 22.8 35 0.0012 28.9 1.8 25 110-134 24-48 (109)
109 3fyb_A Protein of unknown func 21.5 36 0.0012 28.3 1.6 13 131-143 41-53 (104)
110 2o35_A Hypothetical protein DU 21.5 36 0.0012 28.4 1.6 13 131-143 42-54 (105)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=4.4e-12 Score=103.23 Aligned_cols=56 Identities=30% Similarity=0.437 Sum_probs=49.1
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
.++.+.||||++.+.+|++++|||+||..||..|+..+ ...||+|+..+...++.+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--------~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--------HKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--------CCBCTTTCCBCSSCCCEE
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--------cCCCCCCcCCCChhhCcc
Confidence 35688999999999999999999999999999999752 278999999998777665
No 2
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=5.9e-12 Score=98.95 Aligned_cols=57 Identities=23% Similarity=0.523 Sum_probs=48.2
Q ss_pred CCCcccccCc-CCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 109 LSVQCPICLE-YPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 109 ~~~~CpICle-~~~~P----~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
++..||||++ .+.+| ++++|||+||..||.+|+... ...||+|+..+...+++++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------AGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--------SSSCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--------CCcCCCCCCccccccceeecc
Confidence 4678999999 77777 468999999999999998753 268999999999998887654
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.21 E-value=3.9e-12 Score=101.37 Aligned_cols=57 Identities=33% Similarity=0.646 Sum_probs=49.8
Q ss_pred CCCCCcccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEE
Q 008905 107 NPLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P-------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~ 172 (549)
..+...|+||++.+..| ++++|||+||..||..|+... ..||+||..+...++.+++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---------CCCCCCCCccChhheeecc
Confidence 34678999999998877 889999999999999999863 6899999999988887765
No 4
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.6e-12 Score=98.30 Aligned_cols=53 Identities=26% Similarity=0.560 Sum_probs=46.3
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
.+.+.||||++.+.+|++++|||+||..||..|+... ...||+|+..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS--------SPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS--------SCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC--------cCCCCCCCcCCChhhc
Confidence 4578999999999999999999999999999999632 3689999999887664
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=98.86 Aligned_cols=55 Identities=36% Similarity=0.762 Sum_probs=46.9
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
.+.+.||||++.+.+|++++|||+||..||..|+.... ....||+|+..+...++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC------SCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC------CCCCCCCCCCcCCcccC
Confidence 45789999999999999999999999999999997321 23799999999877664
No 6
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.18 E-value=1.7e-11 Score=102.07 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
.++.+.||||++.+.+|++++|||+||..||..|+... ..||+|+.++...+|.+.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~---------~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS---------PTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCCBCCGGGCEEC
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC---------CCCCCCcCCCChHhcchH
Confidence 45789999999999999999999999999999999852 689999999988777763
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.18 E-value=8.9e-12 Score=106.73 Aligned_cols=55 Identities=27% Similarity=0.652 Sum_probs=48.7
Q ss_pred CCCcccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~-t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
+.+.||||++.+..|++ ++|||+||..||..|+.... ..||+||..+...++...
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--------AQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEEC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc--------CCCCCCCCcCCHHHhHhh
Confidence 57899999999999999 99999999999999998742 689999999987777653
No 8
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.17 E-value=8.2e-12 Score=97.22 Aligned_cols=55 Identities=35% Similarity=0.675 Sum_probs=48.3
Q ss_pred CCCcccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEE
Q 008905 109 LSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (549)
Q Consensus 109 ~~~~CpICle~~~~P-------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~ 172 (549)
+...||||++.+..| ++++|||+||..||..|+... ..||+|+..+...++.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---------SBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---------CCCCCCCccCCccceeeee
Confidence 457899999998776 789999999999999999862 6899999999998888765
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=97.31 Aligned_cols=53 Identities=26% Similarity=0.709 Sum_probs=46.6
Q ss_pred CCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
+.+.||||++.+.+|+++ +|||+||..||..|+... ..||+|+..+...++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS---------NRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC---------SSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC---------CcCCCcCcccCcccccc
Confidence 467999999999999986 999999999999999762 68999999998777654
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=2.7e-11 Score=101.70 Aligned_cols=56 Identities=30% Similarity=0.595 Sum_probs=46.9
Q ss_pred CCCCcccccCcCCCCceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc-cCCCcee
Q 008905 108 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI-SSKELYT 170 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~-CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i-~~~~l~~ 170 (549)
.+.+.||||++.+.+|++++ |||+||..||..|+.... ...||+|+..+ ...++.+
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-------TCCCTTTCCSSCCTTSCEE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-------CCcCcCCCCcCCCccccCc
Confidence 45789999999999999999 999999999999997532 26999999987 4445543
No 11
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.15 E-value=2e-11 Score=104.74 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=50.4
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
.++.+.||||++.+.+|++++|||+||..||..|+.. ...||+|+.++...+|.+.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---------SPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---------CSBCSSSCCBCCTTSSEEC
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---------CCCCCCCCCCCChhhceEC
Confidence 4678999999999999999999999999999999974 2689999999998888764
No 12
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.2e-11 Score=107.53 Aligned_cols=69 Identities=36% Similarity=0.640 Sum_probs=52.7
Q ss_pred CcchhhhhhhcCCCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 95 LQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 95 v~w~~i~~v~~~~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
..|+.+..+.....+.+.||||++.+..|++++|||+||..||..|+.... ....||+|+..+...++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK------GPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp SSHHHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS------SSCCCTTTSCCCCTTTCB
T ss_pred HHHHHHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC------CCCCCcCCCCcCCHhhcC
Confidence 345555443333345689999999999999999999999999999998642 136899999987665443
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=97.77 Aligned_cols=51 Identities=31% Similarity=0.615 Sum_probs=44.0
Q ss_pred CCCCcccccCcCCCCceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~-CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+.+.||||++.+.+|++++ |||+||..||..|+.... ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-------SSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-------CCcCCCCCCcCCC
Confidence 35689999999999999999 999999999999998632 3689999997543
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=6.5e-11 Score=97.22 Aligned_cols=60 Identities=33% Similarity=0.592 Sum_probs=50.0
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
.+.+.||||++.+..|++++|||+||..||..|+..... ......||+|+..+...++.+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~---~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRN---TDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBC---TTSCBCCTTTCCCCCTTCCEE
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccC---CCCCCCCCCCCCcCCHHhCCc
Confidence 356899999999999999999999999999999987421 012479999999998877765
No 15
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.12 E-value=4.4e-11 Score=102.23 Aligned_cols=56 Identities=13% Similarity=-0.020 Sum_probs=50.4
Q ss_pred CCCCCcccccCcCCCCceEcCCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 107 NPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CG-H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
.++++.||||++.+.+|++++|| |+||..||..|+.. ...||+|+.++...+|.+.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---------DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---------SCBCTTTCSBCCTTTSEEC
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---------CCCCCCCCCCCChhhceEc
Confidence 46789999999999999999999 99999999999975 1589999999998888764
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.5e-11 Score=97.07 Aligned_cols=47 Identities=30% Similarity=0.646 Sum_probs=42.9
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
..+.||||++.+.+|++++|||+||..||..|+... ..||+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT---------PRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC---------SBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC---------CcCCCcCcccc
Confidence 467999999999999999999999999999999752 68999999886
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6e-11 Score=98.35 Aligned_cols=56 Identities=30% Similarity=0.656 Sum_probs=47.4
Q ss_pred CCCCcccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 108 PLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 108 ~~~~~CpICle~~~~----P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
.+.+.||||++.+.. |++++|||+||..||..|+.... ....||+|+..+...++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCTTTCCCBCCSSTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCCCCCCcccchhHH
Confidence 356899999999988 99999999999999999998742 137999999988776553
No 18
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.11 E-value=4.5e-11 Score=106.13 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=45.7
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC-CCce
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS-KELY 169 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~-~~l~ 169 (549)
+.+.||||++.+..|++++|||+||..||..|+... ...||+|+..+.. ..+.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~ 104 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--------VFSCPACRYDLGRSYAMQ 104 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTTCCCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC--------cCCCCCCCccCCCCCCCC
Confidence 468899999999999999999999999999999842 2699999999876 4443
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.10 E-value=1.3e-11 Score=100.44 Aligned_cols=61 Identities=31% Similarity=0.533 Sum_probs=49.1
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
.+.+.||||++.+.+|++++|||+||..||..|+...... ......||+|+..+...++.+
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~--~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTS--MGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSS--CCCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccC--CCCCCcCCCCCCcCCHhhCCc
Confidence 4578999999999999999999999999999998763211 012479999999988776654
No 20
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=2.8e-11 Score=103.17 Aligned_cols=53 Identities=32% Similarity=0.756 Sum_probs=46.5
Q ss_pred CCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
+.+.||||++.+.+|+++ +|||+||..||..|+... ..||+|+..+...++.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---------TQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---------CBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC---------CCCCCCCCcCChhhCCc
Confidence 568999999999999987 899999999999999752 68999999988766654
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.8e-11 Score=97.90 Aligned_cols=51 Identities=35% Similarity=0.783 Sum_probs=44.7
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
+...|+||++.+.+|++++|||+||..||..|+... ..||+|+..+...++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG---------KRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS---------SBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC---------CcCcCcCchhCHhhc
Confidence 567899999999999999999999999999998652 689999998876544
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.09 E-value=3.4e-11 Score=109.04 Aligned_cols=47 Identities=34% Similarity=0.708 Sum_probs=41.9
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+++.||||++.+.+|++++|||+||..||..|+.. ...||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR---------KIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT---------CSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc---------CCcCCCCCCcCC
Confidence 45789999999999999999999999999999865 268999998764
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=9.4e-11 Score=91.35 Aligned_cols=46 Identities=43% Similarity=0.896 Sum_probs=40.1
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
.+.+.||||++.+.+|++++|||+||..||..|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS------SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC------CCCcCcCC
Confidence 46789999999999999999999999999999998532 13789998
No 24
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8.2e-11 Score=96.59 Aligned_cols=60 Identities=30% Similarity=0.623 Sum_probs=49.0
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
.+.+.||||++.+..|++++|||+||..||..|+...... .....||+|+..+...++.+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD---KGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHT---TSCCCCTTTCCSSCSSSCCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcC---CCCCcCCCCCCccCHHhcCc
Confidence 4578999999999999999999999999999999862100 01379999999998777654
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=8.8e-11 Score=117.52 Aligned_cols=57 Identities=19% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
.+..+.||||++.+.+|++++|||+||..||..|+.... ..||+|+.++...+|.+.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--------~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--------SSCTTTCCCCCGGGCEEC
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--------CCCcCCCCCCchhcCccc
Confidence 456899999999999999999999999999999998642 359999999988887763
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=107.01 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=46.3
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC-Cce
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK-ELY 169 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~-~l~ 169 (549)
+.+.||||++.+.+|++++|||+||..||..|+... ...||+|+..+... .+.
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~l~ 130 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--------VFSCPACRHDLGQNYIMI 130 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTTCCCC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC--------CCcCCCCCccCCCCCCCC
Confidence 468999999999999999999999999999999863 26899999998876 443
No 27
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.7e-11 Score=92.75 Aligned_cols=49 Identities=35% Similarity=0.735 Sum_probs=42.5
Q ss_pred CCCCcccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P-------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+...|+||++.+..+ ++++|||+||..||..|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC---------SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC---------CCCCCCCCccCc
Confidence 4568999999998776 889999999999999999862 689999998754
No 28
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=98.40 Aligned_cols=61 Identities=23% Similarity=0.393 Sum_probs=48.8
Q ss_pred CCCCCcccccCcCCCCceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--Cccc-ccCCCcee
Q 008905 107 NPLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM-ISSKELYT 170 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~-CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~--Cr~~-i~~~~l~~ 170 (549)
..+.+.||||++.|.+|++++ |||+||..||..|+....+. .....||+ |+.. +...+|.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~---~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKR---KKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTT---TCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCc---CCCCCCCcCcCcccccCHhhCcC
Confidence 356789999999999999995 99999999999999863100 01369999 8877 77777765
No 29
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.02 E-value=1.6e-10 Score=109.02 Aligned_cols=58 Identities=19% Similarity=0.065 Sum_probs=51.1
Q ss_pred CCCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 106 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 106 ~~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
..++.+.||||++.|.+|++++|||+||..||..|+.... ..||+|+.++...+|.+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--------~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEEC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--------CCCCCCcCCCChhhCcch
Confidence 3567899999999999999999999999999999998632 369999999988888764
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.7e-10 Score=99.83 Aligned_cols=48 Identities=33% Similarity=0.763 Sum_probs=42.9
Q ss_pred CCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
+.+.||||++.+.+|+++ +|||+||..||..|+... ..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS---------KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC---------SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC---------CcCcCCCccccc
Confidence 578999999999999987 999999999999999752 689999997754
No 31
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=1.6e-10 Score=101.75 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=48.6
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
..+.+.||||++.+..|++++|||+||..||..|+.... ..||+|+..+...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFP 70 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--------CCCCCCCCCcCHHhccc
Confidence 345789999999999999999999999999999998742 48999999998776654
No 32
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=3.9e-11 Score=105.57 Aligned_cols=69 Identities=23% Similarity=0.516 Sum_probs=52.2
Q ss_pred CcCcCCcchhhhhhhcCCCCCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 90 DPDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 90 dpd~~v~w~~i~~v~~~~~~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
.++...+|...........+.+.||||++.+..|+++ +|||+||..||..|+. ..||+|+..+...++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 2 EPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAWIQDL 70 (117)
T ss_dssp CSSTTCCCHHHHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCSCSSC
T ss_pred CCCcccCccchHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCccccc
Confidence 3455566754433222334679999999999999998 9999999999999874 479999998765554
Q ss_pred e
Q 008905 169 Y 169 (549)
Q Consensus 169 ~ 169 (549)
.
T Consensus 71 ~ 71 (117)
T 1jm7_B 71 K 71 (117)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.9e-10 Score=86.69 Aligned_cols=46 Identities=37% Similarity=0.842 Sum_probs=39.4
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
.+...|+||++.+.+|++++|||+||..||..|+.... ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE------RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC------CSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC------CCCCCCCC
Confidence 35689999999999999999999999999999986421 13799998
No 34
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=7.8e-11 Score=109.77 Aligned_cols=49 Identities=39% Similarity=0.760 Sum_probs=42.8
Q ss_pred CCCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
+.+.||||++.+.+|+++ +|||+||..||..|+... ...||+|+..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--------NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--------CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--------cCCCCCCCCcCCC
Confidence 457899999999999987 999999999999999863 2689999998753
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.98 E-value=2.4e-10 Score=92.87 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=44.1
Q ss_pred CCCcccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 109 LSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 109 ~~~~CpICle~~~~P---~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
....|+||++.+..+ +.++|||+||..||.+|+... ..||+||..+...++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---------DSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---------CSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---------CcCcCcCCccCCcccCC
Confidence 467999999988755 467999999999999999652 68999999988776654
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.96 E-value=3.4e-10 Score=99.15 Aligned_cols=54 Identities=35% Similarity=0.637 Sum_probs=47.2
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
+.+.||||++.+.+|+.++|||+||..||..|+.... ..||+|+..+...++.+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMG--------SYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc--------CcCCCCCCCCCHhhccc
Confidence 3678999999999999999999999999999998732 68999999988766543
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.96 E-value=4.2e-10 Score=84.92 Aligned_cols=48 Identities=40% Similarity=0.722 Sum_probs=41.0
Q ss_pred CCCCcccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~----P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.....|+||++.+.. +++++|||+||..||..|+... ..||+|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCCCCCCcCC
Confidence 356789999998855 6789999999999999999873 68999998764
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.95 E-value=4.7e-10 Score=91.79 Aligned_cols=53 Identities=23% Similarity=0.390 Sum_probs=42.5
Q ss_pred CCCCcccccCcCCC--CceEcC--CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 008905 108 PLSVQCPICLEYPL--CPQITS--CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (549)
Q Consensus 108 ~~~~~CpICle~~~--~P~~t~--CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l 168 (549)
.+++.||||++++. ++.+++ |||.||..|+..++... ...||.||..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--------~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--------NGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--------CSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--------CCCCCCCCCccCCCch
Confidence 46789999999874 345555 99999999999987542 2789999999987665
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.94 E-value=4.6e-10 Score=88.62 Aligned_cols=48 Identities=38% Similarity=0.892 Sum_probs=41.7
Q ss_pred CCCCcccccCcCCCCc-eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~P-~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.....|+||++.+.+| +.++|||.||..|+..|+... ..||+|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---------PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS---------CSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc---------CcCcCCChhhH
Confidence 3467899999999886 688999999999999999753 68999998875
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.94 E-value=9.4e-11 Score=102.59 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=42.0
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+++.||||++.+..|++++|||+||..||..|+... ...||+|+..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA--------SLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT--------TSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC--------cCCCCCCCcccC
Confidence 467899999999999999999999999999988642 278999998764
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=3.2e-10 Score=100.75 Aligned_cols=57 Identities=35% Similarity=0.675 Sum_probs=49.0
Q ss_pred CCCCcccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 108 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 108 ~~~~~CpICle~~~~P-------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
.+.+.||||++.+.+| +.++|||+||..||.+|+... ..||+|+..+...++.++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC---------SBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC---------CCCCCCCCcCcccccccccc
Confidence 4678999999999888 899999999999999999752 58999999998877766433
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=9.7e-10 Score=87.04 Aligned_cols=49 Identities=33% Similarity=0.683 Sum_probs=40.8
Q ss_pred CCCCcccccCcCCC---CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~---~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.....|+||++.+. .++.++|||+||..||..|+... ..||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCcCcCccccC
Confidence 34678999998774 45689999999999999999873 579999998754
No 43
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.89 E-value=5.7e-10 Score=110.40 Aligned_cols=57 Identities=26% Similarity=0.524 Sum_probs=49.2
Q ss_pred CCCCCcccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--CcccccCCCcee
Q 008905 107 NPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYT 170 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~-t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~--Cr~~i~~~~l~~ 170 (549)
....+.||||++.+..|++ +.|||+||..||..|+.... ...||+ |+..+...+|.+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~-------~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT-------TRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS-------CEECSGGGCSCEECGGGEEE
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC-------CCCCCcccccCcCchhhCCc
Confidence 4568999999999999997 59999999999999997531 368999 999998888766
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.89 E-value=7.7e-10 Score=92.94 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=40.7
Q ss_pred CCCcccccCcCCCC---ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~---P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
+...|+||++.+.. ++.++|||+||..||..|+... ..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~---------~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS---------GTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT---------CBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC---------CcCcCcCccCCC
Confidence 46789999988876 6788999999999999999652 689999988753
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=6.5e-10 Score=89.68 Aligned_cols=49 Identities=20% Similarity=0.534 Sum_probs=41.7
Q ss_pred CCCCcccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P---~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+...|+||++.+..+ +.++|||+||..||..|+... ..||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------CcCcCcCCcCCC
Confidence 3567899999988776 678999999999999999863 589999987754
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.88 E-value=3.9e-10 Score=102.62 Aligned_cols=52 Identities=23% Similarity=0.454 Sum_probs=44.8
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~ 166 (549)
..+.+.||||++.+.+|+.++|||+||..||..|+... ...||+|+..+...
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--------PQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--------CEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--------CCCCCCCCCccccc
Confidence 45678999999999999999999999999999999753 25899999976433
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.88 E-value=8.9e-10 Score=83.20 Aligned_cols=48 Identities=29% Similarity=0.632 Sum_probs=39.9
Q ss_pred CCCCcccccCcCCCC---ceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLC---PQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~---P~~t~-CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.+...|+||++.+.. ++.++ |||+||..||..|+.. ...||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCcCCCCEeE
Confidence 356789999998876 67776 9999999999999865 268999998763
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.3e-10 Score=90.05 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=43.2
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
.+...|+||++.+.. ++++|||.||..||..|+.. ...||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---------HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---------CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---------cCcCCCcCCcccCCC
Confidence 356899999999988 99999999999999999863 279999999887554
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.86 E-value=1.5e-09 Score=94.64 Aligned_cols=53 Identities=28% Similarity=0.639 Sum_probs=41.4
Q ss_pred CCCcccccCcCCCCce------------------EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLCPQ------------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~P~------------------~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+..|+||++.+..+. +++|||+||..||..|+..... .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~----~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK----DGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC----SSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC----CCCCcCCCCCCccCC
Confidence 4568999999886553 7899999999999999975321 123799999997753
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=87.28 Aligned_cols=49 Identities=33% Similarity=0.684 Sum_probs=40.6
Q ss_pred CCCCcccccCcCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~---~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.....|+||++.+..+. +++|||+||..||..|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCCCcCccccc
Confidence 34678999999987654 44999999999999999863 589999998753
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=7.1e-10 Score=84.67 Aligned_cols=46 Identities=24% Similarity=0.604 Sum_probs=39.6
Q ss_pred CCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+.+.|+||++.+.+|++++|||+||..||..+ ...||+|+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------------GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------------SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------------CCCCCcCCcEeec
Confidence 356899999999999999999999999998651 2689999998754
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.82 E-value=1.2e-09 Score=96.93 Aligned_cols=58 Identities=34% Similarity=0.666 Sum_probs=50.5
Q ss_pred CCCCCcccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 107 NPLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P-------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
..+...|+||++.+..+ +.++|||+||..||.+|+... ..||+||..+..+++.++++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---------SBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---------CCCCCCCCcCChhcceeeeC
Confidence 34678899999988776 789999999999999999863 69999999999999888764
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=1.9e-09 Score=100.77 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=48.9
Q ss_pred CCCCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 008905 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~ 170 (549)
..+.+.||||++.+..|+.++|||+||..||..|+.... ..||+|+..+...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC--------CCCCCCccCcchhhhhh
Confidence 446789999999999999999999999999999998632 58999999998776654
No 54
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.75 E-value=3.9e-09 Score=82.17 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=48.7
Q ss_pred CCcccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 008905 110 SVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t-~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v~~ 173 (549)
.+.||||++.+.+|+++ +|||+||..||.+|+... ..||+++.++...+|.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~---------~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---------GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH---------SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC---------CCCcCCcCCCChhhcEECcc
Confidence 46899999999999999 999999999999999863 46999999999999988543
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=3.4e-09 Score=110.96 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=44.2
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
....|+||++.+.+|++++|||+||..|+..|+... ...||+||..+....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--------~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--------GQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--------CSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--------CCCCCCCCCccCCce
Confidence 347999999999999999999999999999999842 268999999886543
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.67 E-value=1.1e-08 Score=80.34 Aligned_cols=48 Identities=31% Similarity=0.600 Sum_probs=41.7
Q ss_pred CCCCcccccCcCCCCceEc--CCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t--~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.++..|+||++.+.+++++ +|||. ||..|+..|+... ..||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---------KPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT---------CCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC---------CcCCCcCcchh
Confidence 3567899999999999977 99999 8999999998752 68999999874
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=83.98 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=38.2
Q ss_pred CCCcccccCcCCCC--------------ceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLC--------------PQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~--------------P~~-t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
++..|+||++.+.. ++. ++|||+||..||.+|+... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------CCCCCcCCCcch
Confidence 45679999988765 344 4699999999999999763 589999987654
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.63 E-value=5.9e-09 Score=84.11 Aligned_cols=44 Identities=27% Similarity=0.827 Sum_probs=38.8
Q ss_pred CCCcccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
+...|+||++.+.+|++++|||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------------ccCCCcCcCccC
Confidence 46799999999999999999999 999998654 589999998753
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.59 E-value=1.8e-08 Score=78.78 Aligned_cols=47 Identities=32% Similarity=0.703 Sum_probs=40.7
Q ss_pred CCCcccccCcCCCCceEc--CCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t--~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
....|+||++.+.+++++ +|||. ||+.|+..++... ..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG---------ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT---------CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC---------CcCCCcCchhh
Confidence 356899999999999877 99998 9999999988652 68999999874
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.7e-08 Score=80.35 Aligned_cols=44 Identities=27% Similarity=0.836 Sum_probs=38.4
Q ss_pred CCCcccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
+...|+||++.+.+|++++|||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------------CCCCccCCceecC
Confidence 45789999999999999999999 99999842 2689999998864
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=3.5e-08 Score=83.15 Aligned_cols=60 Identities=28% Similarity=0.519 Sum_probs=43.4
Q ss_pred CCCCcccccCcCCCCceEc---CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--Cccc--ccCCCc
Q 008905 108 PLSVQCPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM--ISSKEL 168 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t---~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~--Cr~~--i~~~~l 168 (549)
.+.+.|+||++.+..+.++ +|||.||..||..|+......+. .....||. |+.. +....+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHH
Confidence 3568999999998887654 79999999999999986311111 01368999 9887 554433
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=75.25 Aligned_cols=45 Identities=24% Similarity=0.673 Sum_probs=39.0
Q ss_pred CCCCcccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+...|+||++.+.++++++|||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------------CCCCCCCCcchhc
Confidence 356789999999999999999999 99999873 1689999998753
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.45 E-value=9.7e-08 Score=82.55 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=38.5
Q ss_pred CCCcccccCcCCCCc------------------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCP------------------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P------------------~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+...|+||++.+..+ +.++|||.||..||..|+... ..||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC---------SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC---------CcCcCCCCcce
Confidence 456799999887654 357999999999999999762 68999998753
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.37 E-value=1.3e-07 Score=77.23 Aligned_cols=44 Identities=27% Similarity=0.750 Sum_probs=38.2
Q ss_pred CCCcccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
+...|+||++.+.++++++|||. ||..|+.. +..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQ-------------LQSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTT-------------CSBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHh-------------cCcCCCCCchhhC
Confidence 35689999999999999999999 99999863 2589999998764
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=2.6e-07 Score=95.86 Aligned_cols=43 Identities=26% Similarity=0.822 Sum_probs=38.7
Q ss_pred CCCcccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~-FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
++..|+||++.+.+|++++|||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------------RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------------SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------------CcCCCCCCCcc
Confidence 56899999999999999999999 999998743 58999999875
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.16 E-value=3.1e-07 Score=80.67 Aligned_cols=46 Identities=28% Similarity=0.498 Sum_probs=0.4
Q ss_pred CCcccccCcCCCCc-----------------e-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPLCP-----------------Q-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~~P-----------------~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.-.|+||++.+..+ + .++|||.||..||..|+... ..||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---------~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------QVCPLDNREWE 111 (117)
T ss_dssp C------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---------CcCCCCCCeee
Confidence 45799999887653 2 35899999999999999862 68999998754
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.2e-06 Score=70.25 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=41.4
Q ss_pred CCCCcccccCcCC--CCceEcCCC-----CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 008905 108 PLSVQCPICLEYP--LCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (549)
Q Consensus 108 ~~~~~CpICle~~--~~P~~t~CG-----H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~ 165 (549)
.+...|+||++.+ ..+.+++|+ |.|+..||.+|+.... ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-------TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-------CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-------CCCCCCCCCeeec
Confidence 3467899999866 467788996 9999999999998742 2689999998754
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.70 E-value=2.2e-05 Score=66.10 Aligned_cols=45 Identities=29% Similarity=0.625 Sum_probs=37.6
Q ss_pred cccccCcCCC-CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 112 QCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 112 ~CpICle~~~-~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
-|++|--++. -.++++|.|+||+.|+..|.+... ..||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~--------k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD--------KMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC--------CBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC--------CCCcCcCCeee
Confidence 5899987764 567999999999999999987643 79999998764
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=7.8e-05 Score=59.99 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=38.4
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
...|.||.+.+.... ...|+|.|...||.+|+.... ...||+|+....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-------SCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-------CCCCCCCcCcCC
Confidence 458999999876444 448999999999999997642 268999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.27 E-value=0.00018 Score=55.38 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=39.7
Q ss_pred CCCCcccccCcCCCCceEcCCC--C---cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 108 PLSVQCPICLEYPLCPQITSCG--H---IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~~t~CG--H---~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
.+...|.||++....+.+++|. + .|...||.+|+.... ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-------~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-------NTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-------CSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-------CCccCCCCCeee
Confidence 3567899999877777778865 3 899999999998632 279999998764
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.13 E-value=9.3e-05 Score=75.71 Aligned_cols=56 Identities=23% Similarity=0.508 Sum_probs=39.1
Q ss_pred CCCcccccCcCCCC----ce----EcCCCCcccHHHHHHHHHcCCCCCC--CCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLC----PQ----ITSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~----P~----~t~CGH~FC~~CI~~~~~~~~~~~k--~~~~~~CP~Cr~~i~ 164 (549)
....|+||++.+.. |. ...|||.|...||.+|+........ ..-...||.|+.++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45689999987654 22 2489999999999999986321100 001258999999875
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.16 E-value=0.01 Score=49.79 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCCcccccCcC-CCCceE--cCCCCcccHHHHHHHH
Q 008905 109 LSVQCPICLEY-PLCPQI--TSCGHIFCFPCILQYL 141 (549)
Q Consensus 109 ~~~~CpICle~-~~~P~~--t~CGH~FC~~CI~~~~ 141 (549)
++..|+||.+. +..|+. +.|||.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46789999975 677776 8999999999998743
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.53 E-value=0.058 Score=52.78 Aligned_cols=49 Identities=27% Similarity=0.576 Sum_probs=38.6
Q ss_pred CCCcccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~-~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
....|.||.+...... ...|+|.|...|+..|+.... ...||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-------~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-------SCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-------CCCCCCCCCCCC
Confidence 3678999999776554 445999999999999997632 369999988654
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.19 E-value=0.06 Score=62.07 Aligned_cols=58 Identities=14% Similarity=0.022 Sum_probs=50.9
Q ss_pred cCCCCCCcccccCcCCCCceEcCCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 008905 105 YSNPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (549)
Q Consensus 105 ~~~~~~~~CpICle~~~~P~~t~CG-H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~~v 171 (549)
...++.+.|||-++.+.+|++++.| ++|-..+|.+|+... ..||+-+.++...++.|.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~---------~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD---------STDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---------CBCTTTCCBCCGGGCEEC
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC---------CCCCCCCCCCCccccccc
Confidence 3567899999999999999999998 599999999999752 589999999988888774
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.05 E-value=0.24 Score=39.75 Aligned_cols=36 Identities=31% Similarity=0.665 Sum_probs=30.3
Q ss_pred CCCcccccCcCCCCceEcCC----CCcccHHHHHHHHHcC
Q 008905 109 LSVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMG 144 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~C----GH~FC~~CI~~~~~~~ 144 (549)
..+.|.+|.+-+.+.....| +|.||++|-..+++..
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 35789999999988876666 7999999999998864
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.03 E-value=0.24 Score=41.10 Aligned_cols=47 Identities=26% Similarity=0.667 Sum_probs=35.8
Q ss_pred CCCcccccCcCCCCceEcCC-CCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 008905 109 LSVQCPICLEYPLCPQITSC-GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~C-GH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~ 166 (549)
..+.|..|+-... -++.| -|.+|..|+...+... ..||+|+.++..+
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~S---------drCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVS---------NRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSS---------SEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhc---------cCCcccCCcCCcc
Confidence 4678999986655 34455 5999999998877653 6999999988643
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.38 E-value=0.57 Score=48.47 Aligned_cols=53 Identities=32% Similarity=0.597 Sum_probs=39.6
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHHH--HHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPC--ILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~C--I~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
.+.|||-...+..|+ -..|.|.-|+.- ++.+.... ....||+|...+...+|.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~-------~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI-------PTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS-------CCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC-------CceeCCCCCcccCHHHee
Confidence 588999999999998 568999966553 44444332 247899999988877764
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.63 E-value=0.89 Score=46.83 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=39.1
Q ss_pred CCcccccCcCCCCce-EcCCCCcccHH--HHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 008905 110 SVQCPICLEYPLCPQ-ITSCGHIFCFP--CILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (549)
Q Consensus 110 ~~~CpICle~~~~P~-~t~CGH~FC~~--CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~l~ 169 (549)
.+.|||-...+..|. -..|.|.-|+. -++.+.... ....||+|...+...+|.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~-------~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK-------PTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHS-------CCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhC-------CCeECCCCCcccCHHHeE
Confidence 578999999999988 56899996654 344443332 237899999998877765
No 79
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=70.72 E-value=0.87 Score=47.72 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCcccccCcCCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P----~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
+...|.+|...+.-- ....||++||..|.......... .....+.|-.|...+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~--~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL--KDRMAKVCDGCFGELK 431 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC--CCCcCEecHHHHHHHH
Confidence 356899999876422 25689999999998765433211 1112478888877554
No 80
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.08 E-value=3.8 Score=33.05 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=24.3
Q ss_pred CCCCCcccccCcCCCCc----eEcCCCCcccHHHHHH
Q 008905 107 NPLSVQCPICLEYPLCP----QITSCGHIFCFPCILQ 139 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P----~~t~CGH~FC~~CI~~ 139 (549)
..+...|.+|...|.-- ..-.||++||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34567899999876532 1458999999999644
No 81
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.36 E-value=2.5 Score=36.85 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=23.1
Q ss_pred CCCcccccCcCCCCc----eEcCCCCcccHHHHHH
Q 008905 109 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQ 139 (549)
Q Consensus 109 ~~~~CpICle~~~~P----~~t~CGH~FC~~CI~~ 139 (549)
+...|.+|...|.-- ..-.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 346899999877532 2558999999999643
No 82
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.77 E-value=4.8 Score=32.40 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCCCcccccCcCCCCce----EcCCCCcccHHHHH
Q 008905 107 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCIL 138 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~----~t~CGH~FC~~CI~ 138 (549)
..+...|.+|...|.--. .-.||.+||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 445678999998774221 45899999999953
No 83
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=58.62 E-value=4 Score=32.76 Aligned_cols=33 Identities=27% Similarity=0.640 Sum_probs=24.4
Q ss_pred CCCCCcccccCcCCCCce----EcCCCCcccHHHHHH
Q 008905 107 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 139 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~----~t~CGH~FC~~CI~~ 139 (549)
..+...|.+|...|.--. .-.||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445678999998775321 458999999999653
No 84
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.71 E-value=4.2 Score=33.21 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=23.0
Q ss_pred CCCCcccccCcCCCCc--e--EcCCCCcccHHHHH
Q 008905 108 PLSVQCPICLEYPLCP--Q--ITSCGHIFCFPCIL 138 (549)
Q Consensus 108 ~~~~~CpICle~~~~P--~--~t~CGH~FC~~CI~ 138 (549)
.+...|.+|...|.-- + ...||.+||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 3456899999876532 2 45899999999964
No 85
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.17 E-value=5.3 Score=32.68 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=22.9
Q ss_pred CCCcccccCcCCCCc----eEcCCCCcccHHHHHH
Q 008905 109 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQ 139 (549)
Q Consensus 109 ~~~~CpICle~~~~P----~~t~CGH~FC~~CI~~ 139 (549)
+...|.+|...|.-- ....||++||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 356899999876421 2568999999999644
No 86
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.03 E-value=7 Score=37.47 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=21.9
Q ss_pred CcccccCcCCCCc----eEcCCCCcccHHHHHH
Q 008905 111 VQCPICLEYPLCP----QITSCGHIFCFPCILQ 139 (549)
Q Consensus 111 ~~CpICle~~~~P----~~t~CGH~FC~~CI~~ 139 (549)
..|.+|...|.-- ....||++||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4899999876522 2568999999999643
No 87
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.32 E-value=2.7 Score=28.30 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=12.9
Q ss_pred CCCCcccccCcCCCCce
Q 008905 108 PLSVQCPICLEYPLCPQ 124 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~ 124 (549)
.+.+.||||+..+..+-
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 35689999998777653
No 88
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=49.61 E-value=5.3 Score=34.64 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=21.8
Q ss_pred CCcccccCcCCCCc----eEcCCCCcccHHHHH
Q 008905 110 SVQCPICLEYPLCP----QITSCGHIFCFPCIL 138 (549)
Q Consensus 110 ~~~CpICle~~~~P----~~t~CGH~FC~~CI~ 138 (549)
...|..|...|..- ..-.||.+||..|..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~ 51 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSS 51 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEE
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhC
Confidence 46899999887532 256899999999954
No 89
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=48.60 E-value=7.9 Score=30.26 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=21.2
Q ss_pred CcccccCcCCCCce----EcCCCCcccHHHHH
Q 008905 111 VQCPICLEYPLCPQ----ITSCGHIFCFPCIL 138 (549)
Q Consensus 111 ~~CpICle~~~~P~----~t~CGH~FC~~CI~ 138 (549)
..|.+|...|.--. .-.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 48999998765321 45799999999953
No 90
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.38 E-value=5 Score=38.22 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=21.4
Q ss_pred CcccccCcCCCCc----eEcCCCCcccHHHHH
Q 008905 111 VQCPICLEYPLCP----QITSCGHIFCFPCIL 138 (549)
Q Consensus 111 ~~CpICle~~~~P----~~t~CGH~FC~~CI~ 138 (549)
..|++|...|.-- ..-.||++||..|..
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 5899999876522 156899999999854
No 91
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=42.43 E-value=11 Score=42.91 Aligned_cols=57 Identities=28% Similarity=0.466 Sum_probs=38.7
Q ss_pred CCCCCcccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCCC
Q 008905 107 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKRC 156 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~----------~t~CGH~F--------------------C~~CI~~~~~~~~~~~k~~~~~~C 156 (549)
.++...|+-|+..+.+|. +|.||-.| |..|-..|-........ .....|
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfh-Aqp~aC 181 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYH-AEPTAC 181 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTT-CTTCCC
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCc-CCCCCC
Confidence 566778999997655442 56787664 99999999865432111 124699
Q ss_pred CCCccccc
Q 008905 157 PLCFVMIS 164 (549)
Q Consensus 157 P~Cr~~i~ 164 (549)
|.|.-.+.
T Consensus 182 ~~CGP~l~ 189 (772)
T 4g9i_A 182 PVCGPSYR 189 (772)
T ss_dssp TTTSCCEE
T ss_pred ccCCceEE
Confidence 99986553
No 92
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=40.52 E-value=12 Score=41.77 Aligned_cols=57 Identities=30% Similarity=0.530 Sum_probs=38.9
Q ss_pred CCCCCCcccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCC
Q 008905 106 SNPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKR 155 (549)
Q Consensus 106 ~~~~~~~CpICle~~~~P~----------~t~CGH~F--------------------C~~CI~~~~~~~~~~~k~~~~~~ 155 (549)
..++.-.|+-|+..+.+|. +|.||-.| |..|-..|-........ .....
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfH-Aqp~a 91 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFH-AQPVA 91 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTT-CTTCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCc-CCCCc
Confidence 4567788999997655442 56777654 99999999876432211 12479
Q ss_pred CCCCcccc
Q 008905 156 CPLCFVMI 163 (549)
Q Consensus 156 CP~Cr~~i 163 (549)
||.|.-.+
T Consensus 92 Cp~CGP~l 99 (657)
T 3ttc_A 92 CPECGPYL 99 (657)
T ss_dssp CTTTSCCE
T ss_pred CcccCccc
Confidence 99997655
No 93
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.95 E-value=2.3 Score=42.99 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=32.8
Q ss_pred CCCcccccCcCCCCceEc----CCC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 109 LSVQCPICLEYPLCPQIT----SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t----~CG--H~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
....||+|-..+...++. .=| +.+|..|-..|-.. ...||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~---------R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV---------RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC---------TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec---------CcCCcCCCCC
Confidence 457899999998877654 234 46788887776543 2699999875
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=37.48 E-value=48 Score=26.86 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCCCcccccCcCCCCce--EcCCCCcccHHHHHHHHHcCCC-------CCCCCCcCCCCCCc
Q 008905 108 PLSVQCPICLEYPLCPQ--ITSCGHIFCFPCILQYLLMGDE-------DYKGDCFKRCPLCF 160 (549)
Q Consensus 108 ~~~~~CpICle~~~~P~--~t~CGH~FC~~CI~~~~~~~~~-------~~k~~~~~~CP~Cr 160 (549)
..+..|+||--...... .-.|+-+|...|+.+.=....+ ..+-.....||.|.
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 35678999985432222 3468999999999885222111 01112347899993
No 95
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=36.61 E-value=13 Score=42.23 Aligned_cols=56 Identities=25% Similarity=0.384 Sum_probs=37.0
Q ss_pred CCCCCcccccCcCCCCce----------EcCCCCc--------------------ccHHHHHHHHHcCCCCCCCCCcCCC
Q 008905 107 NPLSVQCPICLEYPLCPQ----------ITSCGHI--------------------FCFPCILQYLLMGDEDYKGDCFKRC 156 (549)
Q Consensus 107 ~~~~~~CpICle~~~~P~----------~t~CGH~--------------------FC~~CI~~~~~~~~~~~k~~~~~~C 156 (549)
.++...|+-|+..+.+|. +|.||-. +|..|-..|-........ .....|
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfh-Aqp~aC 186 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFH-AQPVAC 186 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTT-CTTCCC
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCccccccc-CCCCcC
Confidence 456778999997655442 5678854 499999998765432111 124689
Q ss_pred CCCcccc
Q 008905 157 PLCFVMI 163 (549)
Q Consensus 157 P~Cr~~i 163 (549)
|.|.-.+
T Consensus 187 ~~CGP~l 193 (761)
T 3vth_A 187 FDCGPSL 193 (761)
T ss_dssp TTTSCCE
T ss_pred CccCCee
Confidence 9997654
No 96
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=35.49 E-value=21 Score=27.48 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=24.7
Q ss_pred CCCcccccCcCCCCceEcCC-CCcccHHHHHHHHH
Q 008905 109 LSVQCPICLEYPLCPQITSC-GHIFCFPCILQYLL 142 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~C-GH~FC~~CI~~~~~ 142 (549)
+..-|-||.+.-+ -+...| |-.||..|....-.
T Consensus 7 e~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 7 GLPWCCICNEDAT-LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHTT
T ss_pred CCCeeEEeCCCCe-EEecCCCCceehHHHHHHHcc
Confidence 3456999998833 447889 88999999876553
No 97
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.86 E-value=1.6 Score=36.41 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
-+..||+|..++.- .=|+.+|..|-..|.. ...||.|..++.
T Consensus 31 M~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~----------~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----DNGHARCRSCGEFIEM----------KALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEE----ETTEEEETTTCCEEEE----------EEECTTTCSBCE
T ss_pred ccccCccCCCccee----cCCEEECccccchhhc----------cccCcchhhHHH
Confidence 34789999976541 1244558777443322 268999988764
No 98
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.35 E-value=4.4 Score=30.68 Aligned_cols=33 Identities=21% Similarity=0.565 Sum_probs=23.0
Q ss_pred CCcccccCcCCCCc----eEc--C--CCCcccHHHHHHHHH
Q 008905 110 SVQCPICLEYPLCP----QIT--S--CGHIFCFPCILQYLL 142 (549)
Q Consensus 110 ~~~CpICle~~~~P----~~t--~--CGH~FC~~CI~~~~~ 142 (549)
...||-|..+.... .|+ . ||+.||+.|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35799998776532 133 3 899999999876654
No 99
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.95 E-value=45 Score=29.82 Aligned_cols=48 Identities=13% Similarity=0.303 Sum_probs=36.1
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
+=+.|..|...+.......=|..||..|..+.+. .+|..|...|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------TKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----------CBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc-----------ccccccccccCCCc
Confidence 4578999988776544566789999999877552 58999988776543
No 100
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=30.52 E-value=21 Score=26.97 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=27.6
Q ss_pred CcccccCcCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 008905 111 VQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (549)
Q Consensus 111 ~~CpICle~~~~P~---~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~C 159 (549)
..|--|...+.... ...|++.||..|=.- +.. .-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-iHe--------~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-VHD--------SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-TTT--------TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-HHh--------hccCCcCC
Confidence 45888988775443 568999999999432 211 13689988
No 101
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.33 E-value=27 Score=29.59 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCcccccCcCCCC---ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 110 SVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 110 ~~~CpICle~~~~---P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
=+.|..|...+.. .....=|..||..|..+.+.. ...|..|..+|....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~---------~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---------SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC---------CCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC---------CCccccCCCCcCchh
Confidence 4789999888862 345677899999998876632 138999999887543
No 102
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.11 E-value=94 Score=25.38 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=33.0
Q ss_pred CCCcccccCcCCC-----Cce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 008905 109 LSVQCPICLEYPL-----CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (549)
Q Consensus 109 ~~~~CpICle~~~-----~P~--~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~ 164 (549)
....|.||-+..- .+. .-.|+--.|.+|+.--...+ ...||-|.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG--------~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG--------TQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS--------CSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc--------CccccccCCccc
Confidence 4578999998632 122 33688888999987555443 379999987653
No 103
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=27.64 E-value=52 Score=25.10 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=30.9
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~ 162 (549)
....|.||.+.-..-..-.|...|...|+..-+..... ....||.|...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-----g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPG-----TGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCS-----SSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCC-----CCEECccccCC
Confidence 34579999864221112378999999998654443221 23689999653
No 104
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.41 E-value=25 Score=28.12 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=11.4
Q ss_pred CCCCcccHHHHHHH
Q 008905 127 SCGHIFCFPCILQY 140 (549)
Q Consensus 127 ~CGH~FC~~CI~~~ 140 (549)
.||+.||..|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 59999999996554
No 105
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.47 E-value=47 Score=27.99 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=35.6
Q ss_pred CCCcccccCcCCCC-ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 008905 109 LSVQCPICLEYPLC-PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (549)
Q Consensus 109 ~~~~CpICle~~~~-P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~ 166 (549)
+=+.|..|...+.. +....=|..||..|..+.+ ..+|..|..+|...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-----------~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-----------AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-----------CCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-----------CccCcccCCcCCcC
Confidence 45789999987765 3456779999999976543 25899999988754
No 106
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.07 E-value=44 Score=30.34 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=35.1
Q ss_pred CCCcccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 008905 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (549)
Q Consensus 109 ~~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~~~~~~k~~~~~~CP~Cr~~i~~~~ 167 (549)
+=+.|..|...+.......=|..||..|..+.+ ..+|..|..+|...+
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-----------~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-----------GTKCAACQLGIPPTQ 133 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT-----------SCCCTTTCCCCCSSC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc-----------ccccccCCCccCCCc
Confidence 457899998877654445678899999976533 258999998876543
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=22.94 E-value=47 Score=29.48 Aligned_cols=46 Identities=28% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCcccccCcCCCCceEcCCCCcccHHHHHHHHHc--------CCCCCCCCCcCCCCCCcc
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM--------GDEDYKGDCFKRCPLCFV 161 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~~CI~~~~~~--------~~~~~k~~~~~~CP~Cr~ 161 (549)
+..|.+|.+-=.---.-.|-.+||..||..-+.. .. ....||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~------~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDEN------NQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTST------TCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCC------CCCEeecccC
Confidence 4569999864321123479999999999865531 11 2378999964
No 108
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.82 E-value=35 Score=28.85 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCcccccCcCCCCceEcCCCCcccH
Q 008905 110 SVQCPICLEYPLCPQITSCGHIFCF 134 (549)
Q Consensus 110 ~~~CpICle~~~~P~~t~CGH~FC~ 134 (549)
...|..|...-..-+.+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999976555568899999994
No 109
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.52 E-value=36 Score=28.31 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=11.0
Q ss_pred cccHHHHHHHHHc
Q 008905 131 IFCFPCILQYLLM 143 (549)
Q Consensus 131 ~FC~~CI~~~~~~ 143 (549)
.||..||..|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999875
No 110
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.50 E-value=36 Score=28.35 Aligned_cols=13 Identities=23% Similarity=0.582 Sum_probs=11.1
Q ss_pred cccHHHHHHHHHc
Q 008905 131 IFCFPCILQYLLM 143 (549)
Q Consensus 131 ~FC~~CI~~~~~~ 143 (549)
.||..||..|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999876
Done!