BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008907
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 166 bits (419), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 9 SLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEW 68
SL PGFRF+PTDEEL+ YL RK I D+YK +PW LP+K+ +KEW
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEW 76
Query: 69 YFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERT 128
YFFS D+KY NGSR NR GYWK TG D+ + + VG+KK LV+++G+AP G +T
Sbjct: 77 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 129 NWVMHEYRLTDDDLEKAGVAQDTFVLCRIFQKSGSGPK 166
NW+MHEYRL + D +VLCRI++K S K
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 165 bits (418), Expect = 6e-41, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRD 65
A +L PGFRFHPTD+ELV +YL RK + L I D+YK +PWDLP+++ R
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR- 69
Query: 66 KEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHG 125
EWYFF+ D+KY NGSR NRA GYWK TG D+PV RT+G+KK LV++ G+AP G
Sbjct: 70 -EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 126 ERTNWVMHEYRL-----TDDDLEKAGVAQDTFVLCRIFQKSGSGPK 166
+T+W+MHEYRL +K + D +VLCR++ K K
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 9 SLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEW 68
SL PGFRF+PTDEEL+ YL RK I D+YK +PW LP+K+ +KEW
Sbjct: 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEW 73
Query: 69 YFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERT 128
YFFS D+KY NGSR NR GYWK TG D+ + + VG+KK LV+++G+AP G +T
Sbjct: 74 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 129 NWVMHEYRLTDDDLEKAGVAQDTFVLCRIFQKSGSGPK 166
NW+MHEYRL + D +VLCRI++K S K
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 8 TSLAPGFR---FHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPD------- 57
T LA G R H DE+LVRY+L + + R L F + + E D PD
Sbjct: 167 TLLAEGLRESRKHIEDEKLVRYFLDKTLTSR-LGFRMLATHHLALHE--DKPDFVGIICT 223
Query: 58 KSSLKTRDKEWYFFS--MLDKKYGNGSRTN 85
+ S K ++W F+ + + KYGN R
Sbjct: 224 RLSPKKIIEKWVDFARRLCEHKYGNAPRVR 253
>pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
Pseudomonas Aeruginosa
Length = 780
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 382 SMAGQHQVEVH--GNDVASTSEQKPDIVKSESDVKYPFLKQASQMLGNVAAAPAFAS--- 436
++ +HQVE+ GN AS ++ D + E KYP +K M+ A+ AS
Sbjct: 378 ALCAKHQVELIAIGNGTAS---RETDKLAGELIKKYPGMKLTKIMVSEAGASVYSASELA 434
Query: 437 --EFPTKDAALR 446
EFP D +LR
Sbjct: 435 AKEFPELDVSLR 446
>pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form I
pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form 2
Length = 785
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 382 SMAGQHQVEVH--GNDVASTSEQKPDIVKSESDVKYPFLKQASQMLGNVAAAPAFAS--- 436
++ +HQVE+ GN AS ++ D + E KYP +K M+ A+ AS
Sbjct: 377 ALCAKHQVELIAIGNGTAS---RETDKLAGELIKKYPGMKLTKIMVSEAGASVYSASELA 433
Query: 437 --EFPTKDAALR 446
EFP D +LR
Sbjct: 434 AKEFPELDVSLR 445
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,497,418
Number of Sequences: 62578
Number of extensions: 717724
Number of successful extensions: 1039
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 15
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)