Query 008907
Match_columns 549
No_of_seqs 202 out of 976
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:29:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 8.4E-54 2.9E-58 405.7 14.6 156 5-162 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 8E-54 2.7E-58 404.8 12.3 157 6-164 13-169 (171)
3 2oh5_A Polyhedrin, C-polyhedri 12.8 1.1E+02 0.0038 29.0 2.8 28 90-117 140-168 (248)
4 1ldd_A APC2WHB, anaphase promo 10.2 1.3E+02 0.0045 24.6 2.1 27 11-38 37-64 (74)
5 1jgn_B PAIP2, polyadenylate-bi 9.4 1.7E+02 0.0058 19.4 1.9 19 400-418 4-22 (26)
6 4dox_A Coat protein; all helix 6.6 2E+02 0.0068 28.2 2.0 27 7-33 152-178 (226)
7 2li5_B Ubiquitin-like modifier 5.5 1.9E+02 0.0064 20.1 0.7 8 178-185 23-30 (34)
8 2w91_A Endo-beta-N-acetylgluco 4.8 3.5E+02 0.012 30.2 2.8 23 294-316 224-246 (653)
9 3daq_A DHDPS, dihydrodipicolin 4.8 1.8E+02 0.0062 28.6 0.5 18 9-27 103-120 (292)
10 3ukx_C Bimax2 peptide; arm rep 4.8 1.9E+02 0.0065 19.3 0.4 8 178-185 12-19 (28)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=8.4e-54 Score=405.71 Aligned_cols=156 Identities=50% Similarity=0.967 Sum_probs=136.0
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCcccccCCCCcceEeeeccccccCCCCcc
Q 008907 5 FASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRT 84 (549)
Q Consensus 5 ~~~~~LPPGfRF~PTDEELV~~YLkrKi~G~plp~d~I~evDVY~~ePWdLP~~s~~~~~d~eWYFFspr~kKy~nG~R~ 84 (549)
.+.+.|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+|||||++++||++|.|+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~ 87 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRP 87 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCS
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCc
Confidence 356899999999999999999999999999999999999999999999999998753 467999999999999999999
Q ss_pred ccccccceeeecCCceeeecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhh-----cCCCCCceEEEEeec
Q 008907 85 NRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEK-----AGVAQDTFVLCRIFQ 159 (549)
Q Consensus 85 nRatggGyWKatGk~r~I~~~g~vVG~KKtLvFy~Grap~G~KT~WvMhEYrL~~~~l~~-----ag~~qd~~VLCRIf~ 159 (549)
+|+|++||||+||++++|..+|++||+||+|+||.|++|++.||+|+||||+|.+..... .....++|||||||+
T Consensus 88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999999988999999999999999999999999999999999875321 112357999999999
Q ss_pred ccC
Q 008907 160 KSG 162 (549)
Q Consensus 160 K~~ 162 (549)
|++
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8e-54 Score=404.76 Aligned_cols=157 Identities=48% Similarity=0.912 Sum_probs=132.2
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCcccccCCCCcceEeeeccccccCCCCccc
Q 008907 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (549)
Q Consensus 6 ~~~~LPPGfRF~PTDEELV~~YLkrKi~G~plp~d~I~evDVY~~ePWdLP~~s~~~~~d~eWYFFspr~kKy~nG~R~n 85 (549)
+...|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+. .++.+|||||++++||++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 4578999999999999999999999999999999999999999999999999874 34789999999999999999999
Q ss_pred cccccceeeecCCceeeecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhhcCCCCCceEEEEeecccCCC
Q 008907 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEKAGVAQDTFVLCRIFQKSGSG 164 (549)
Q Consensus 86 RatggGyWKatGk~r~I~~~g~vVG~KKtLvFy~Grap~G~KT~WvMhEYrL~~~~l~~ag~~qd~~VLCRIf~K~~~g 164 (549)
|+|++||||+||++++|..++++||+||+|+||.|++|++.||+|+||||+|...........+++|||||||+|++..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999999998899999999999999999999999999999999987522222346899999999997653
No 3
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=12.82 E-value=1.1e+02 Score=28.98 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.4
Q ss_pred cceeeecC-CceeeecCCeeEEEEEEEEe
Q 008907 90 KGYWKTTG-KDRPVHHNTRTVGMKKTLVY 117 (549)
Q Consensus 90 gGyWKatG-k~r~I~~~g~vVG~KKtLvF 117 (549)
.--|.+|| +-|.|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 45699999 67888899999999888754
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=10.23 E-value=1.3e+02 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCCceeCC-ChHHHHHHHHHHHhcCCCCC
Q 008907 11 APGFRFHP-TDEELVRYYLKRKVCHRSLR 38 (549)
Q Consensus 11 PPGfRF~P-TDEELV~~YLkrKi~G~plp 38 (549)
|.|+.|.. |++||-. ||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 66899998 8899888 699999887663
No 5
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=9.45 E-value=1.7e+02 Score=19.43 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.0
Q ss_pred cCCCCcccccccCCCChhh
Q 008907 400 SEQKPDIVKSESDVKYPFL 418 (549)
Q Consensus 400 s~~~~~~~~~~~~~~~~~~ 418 (549)
|.-+|++.+|.++++|--+
T Consensus 4 s~lnp~akef~pgvkygni 22 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKYGNI 22 (26)
T ss_dssp CSSCTTCCCCCTTSCTTCC
T ss_pred ccCCcchhhcCCCceecce
Confidence 4457899999999999544
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=6.60 E-value=2e+02 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=18.5
Q ss_pred CCCCCCCceeCCChHHHHHHHHHHHhc
Q 008907 7 STSLAPGFRFHPTDEELVRYYLKRKVC 33 (549)
Q Consensus 7 ~~~LPPGfRF~PTDEELV~~YLkrKi~ 33 (549)
++.-+-|..+.||++|+|.|=..+++.
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344556999999999999986555443
No 7
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=5.47 E-value=1.9e+02 Score=20.14 Aligned_cols=8 Identities=75% Similarity=1.315 Sum_probs=5.4
Q ss_pred cccccccc
Q 008907 178 EEWEDDEA 185 (549)
Q Consensus 178 eew~dde~ 185 (549)
-||+|||.
T Consensus 23 feweddes 30 (34)
T 2li5_B 23 FEWEDDES 30 (34)
T ss_dssp CCSSCTTS
T ss_pred cccccccc
Confidence 36888764
No 8
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted, oxazoline, NAG-thiazoline, substrate-participation; 1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Probab=4.83 E-value=3.5e+02 Score=30.23 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.9
Q ss_pred ccccccCCCCCCCCCCcceeecc
Q 008907 294 LNEPYLDATDNPQFSDGLYLEAN 316 (549)
Q Consensus 294 ~~~~f~da~~~~~~~dg~f~~~n 316 (549)
.|.+|+++....+.+||.||+.|
T Consensus 224 ~N~~ff~~~~~~~~~D~~FlNY~ 246 (653)
T 2w91_A 224 YNYQFMQPEGDKVPADNFFANFN 246 (653)
T ss_dssp TTGGGTCCBTTBCSCSEEEECSC
T ss_pred hHHHHHhccCCCcccceEEEecC
Confidence 38899999988899999999998
No 9
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=4.83 E-value=1.8e+02 Score=28.62 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=14.1
Q ss_pred CCCCCceeCCChHHHHHHH
Q 008907 9 SLAPGFRFHPTDEELVRYY 27 (549)
Q Consensus 9 ~LPPGfRF~PTDEELV~~Y 27 (549)
-+|| |.|.||+++|+.||
T Consensus 103 v~~P-~y~~~~~~~l~~~f 120 (292)
T 3daq_A 103 LITP-YYNKTNQRGLVKHF 120 (292)
T ss_dssp EECC-CSSCCCHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHH
Confidence 3445 56789999999987
No 10
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=4.75 E-value=1.9e+02 Score=19.34 Aligned_cols=8 Identities=50% Similarity=1.361 Sum_probs=6.2
Q ss_pred cccccccc
Q 008907 178 EEWEDDEA 185 (549)
Q Consensus 178 eew~dde~ 185 (549)
.||+||++
T Consensus 12 rewddddd 19 (28)
T 3ukx_C 12 REWDDDDD 19 (28)
T ss_dssp CCCCCSSS
T ss_pred cccccCCC
Confidence 57998875
Done!