Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>008908
MVTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPST
IVNPSSVLGGRCDSDSENLEIVQATQSNLRLKKNAVDRLSKNERKRNDSGSLAKAEVQKS
GNSSSYLLQVHHSNNHEKDKKCGRRGELDGRSIYAEAESVKTKTSLATGGDSNSNPQYSR
ELLCNESDKNYEKLGRQIGLDGSSFNDEAESFRTRTSQVVTNDPPYTRECSSNAHKVVVI
EVHSMGNDKKGYQFRRQRELVKNSSDTGTKSLKNSLVTTSHSFSIPKHSSNVSEKSIFEV
QFKEDAVKDLSPIRWSGLNGGSSTEESESSKKETSLIASSRPSNIPEHCFVPAQPIIEPI
WKGNLRLSSDKYGSIEGLVAHLSTSACSKVFQEAKLLPQLLCPELLPRSNSWPKSFHKWG
PSDDNIALYLFPNNERSEKVYDSLVHDMISHDVALRAVVKNAALLLFTSNLLPFQFWRFQ
SKFYLWGVFRAKQASQSQTLAVDSVNAISISKPNGLVKALTQYPQSPGSPLSNSGSHGSG
SVHSCQSML

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  008908
        (549 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2029147 - symbol:AT1G43770 "AT1G43770" species...   325  1.9e-48   3
TAIR|locus:2159421 - symbol:AT5G61120 species:3702 "Arabi...   110  3.3e-08   2


>TAIR|locus:2029147 [details] [associations]
            symbol:AT1G43770 "AT1G43770" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628
            PROSITE:PS50016 SMART:SM00249 EMBL:CP002684 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
            InterPro:IPR013083 SUPFAM:SSF57903 EMBL:AC009526 EMBL:AB493497
            IPI:IPI00891093 RefSeq:NP_001117432.1 UniGene:At.38927
            ProteinModelPortal:B3H578 SMR:B3H578 EnsemblPlants:AT1G43770.2
            GeneID:840971 KEGG:ath:AT1G43770 TAIR:At1g43770 eggNOG:NOG253133
            HOGENOM:HOG000064612 OMA:SRKPHEL PhylomeDB:B3H578
            ProtClustDB:CLSN2680393 Genevestigator:B3H578 Uniprot:B3H578
        Length = 431

 Score = 325 (119.5 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
 Identities = 65/146 (44%), Positives = 93/146 (63%)

Query:   353 AQPIIEPIWKGNLRLSSDKYGSIEGLVAHLSTSACSKVFQEAKXXXXXXXXXXXXRSNSW 412
             AQPI  PIW+G + +      +++G+VAH+S+ AC KV + A             R   W
Sbjct:   285 AQPIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVW 344

Query:   413 PKSFHK-WGPSDDNIALYLFPNNERS-EKVYDSLVHDMISHDVALRAVVKNAALLLFTSN 470
             PK+F K  GP D+++AL+ FP++E + EKV+DSLV  M  +D A+R V+ +A LLLFTS 
Sbjct:   345 PKTFLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSY 404

Query:   471 LLPFQFWRFQSKFYLWGVFRAKQASQ 496
             +LP   W F SK+YLWGVF+ +Q S+
Sbjct:   405 MLPKDSWTFNSKYYLWGVFKPRQTSR 430

 Score = 156 (60.0 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query:     4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCE 52
             VCQ CGD GF EAL+ C+ C   ++H YCL + P  F + + W CEDC+
Sbjct:     9 VCQTCGDIGFEEALVFCDSCMFESIHRYCLGITPIPFTEYITWICEDCD 57

 Score = 60 (26.2 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
 Identities = 32/138 (23%), Positives = 55/138 (39%)

Query:   165 SLATGGDSNSNPQYSRELLCNESDKNYEKLGRQIGLDGSSFNDEAESFRTRTSQVVTNDP 224
             S+    DS+S P +S    C    K  ++      L       E +  + +  + + + P
Sbjct:   122 SVLEAADSSSVPDHSS---CTSKRKEVDQTAN---LGHILERSEKKKKKKKKKKSINHSP 175

Query:   225 PYT----RECSSNAHKVVVIEVHSMGNDKKGYQFRRQRELVKNSSDTGTKSLKNSLV--- 277
             P       E     + V  +EV S    K+  + +RQ      SSD+        LV   
Sbjct:   176 PVLAVEDHELQGTTNVVEPVEVSSSSPTKETMESKRQE-----SSDSRKPHELTCLVGDS 230

Query:   278 TTSHSFSIPKHSSNVSEK 295
              T++S S+P+H+S   +K
Sbjct:   231 ETANSSSVPEHNSCAVKK 248

 Score = 41 (19.5 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
 Identities = 21/91 (23%), Positives = 39/91 (42%)

Query:   206 NDEAESFRTRTSQVVTNDPPYTRECSSNAHKVVVIEVHSMGNDKKGYQFRRQRELVKNSS 265
             N E++S      Q V       ++ S N   VV+ E + +    +G + R +    +   
Sbjct:    58 NSESDSDCNEVDQTVKK-----KKKSRNQPLVVLAEDNVLQEPLEGSK-REESSCSRKPH 111

Query:   266 D-TGTKSLKNSLVTTSHSFSIPKHSSNVSEK 295
             + T       S++  + S S+P HSS  S++
Sbjct:   112 ELTCLDGNGESVLEAADSSSVPDHSSCTSKR 142


>TAIR|locus:2159421 [details] [associations]
            symbol:AT5G61120 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002688 IPI:IPI00529807
            RefSeq:NP_200920.3 UniGene:At.8412 ProteinModelPortal:F4K200
            SMR:F4K200 PRIDE:F4K200 EnsemblPlants:AT5G61120.1 GeneID:836233
            KEGG:ath:AT5G61120 OMA:RSICETC Uniprot:F4K200
        Length = 426

 Score = 110 (43.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query:     3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDC 51
             ++C+ CG +G+  +L+ C KC+    H YC+    +SFE  + + C DC
Sbjct:    10 SICETCGHQGWKNSLVTCSKCRIACEHCYCMR--ESSFETSIHFVCADC 56

 Score = 93 (37.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 32/148 (21%), Positives = 62/148 (41%)

Query:   351 VPAQPIIEPIWKGNLRLSSDKYGSIEG-LVAHLSTSACSKVFQEAKXXXXXXXXXXXXRS 409
             +P +P + PIWKG + + S       G  +A  ++    K +  +K              
Sbjct:   226 LPYRPALHPIWKGRI-VDSATPSEFNGEFLAQPASKVRGKAYILSKAIPVLLKVKLVPIG 284

Query:   410 NSWPKSFHKWGPSDDNIALYLFPNNERSEKVY---DSLVHDMISHDVALRAVVKNAALLL 466
             N     F    P   ++ +Y+FP+++ +++     D +   M   +  ++  +    LL+
Sbjct:   285 NLLSGLFMNRKPGLSDVEMYIFPDDKNTKRFTAERDHIFEAMRIRNAMMKFNINGTPLLI 344

Query:   467 FTSNLLPFQ---FWRFQSKF--YLWGVF 489
             F+S LL        + Q K   +LWG+F
Sbjct:   345 FSSKLLDKSSQIIIKMQKKTNNFLWGIF 372


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      549       500   0.00084  119 3  11 23  0.44    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  309 KB (2158 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  47.86u 0.15s 48.01t   Elapsed:  00:00:02
  Total cpu time:  47.86u 0.15s 48.01t   Elapsed:  00:00:02
  Start:  Sat May 11 09:33:00 2013   End:  Sat May 11 09:33:02 2013

Back to top