Query 008909
Match_columns 549
No_of_seqs 584 out of 4386
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 18:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 4.5E-57 9.7E-62 451.0 35.4 346 164-548 4-350 (444)
2 TIGR03594 GTPase_EngA ribosome 100.0 5.3E-46 1.1E-50 392.7 39.2 342 165-548 1-343 (429)
3 PRK03003 GTP-binding protein D 100.0 1.2E-45 2.6E-50 391.6 39.0 343 163-548 38-381 (472)
4 PRK00093 GTP-binding protein D 100.0 1.1E-44 2.4E-49 382.9 40.7 341 164-548 2-343 (435)
5 PRK09518 bifunctional cytidyla 100.0 3.2E-43 6.9E-48 389.6 39.7 347 161-548 273-620 (712)
6 KOG1191 Mitochondrial GTPase [ 99.9 2.9E-25 6.3E-30 222.1 11.3 357 164-548 76-449 (531)
7 KOG1144 Translation initiation 99.9 9E-25 1.9E-29 225.5 10.8 211 159-431 471-741 (1064)
8 COG1159 Era GTPase [General fu 99.9 1.6E-23 3.4E-28 199.6 18.4 166 371-548 6-171 (298)
9 COG0486 ThdF Predicted GTPase 99.9 8.8E-23 1.9E-27 205.6 19.3 162 368-548 214-375 (454)
10 PF02421 FeoB_N: Ferrous iron 99.9 6.4E-23 1.4E-27 182.1 15.3 155 373-544 2-156 (156)
11 COG1160 Predicted GTPases [Gen 99.9 1.1E-22 2.5E-27 204.2 18.1 161 372-548 4-164 (444)
12 COG1159 Era GTPase [General fu 99.9 1.3E-22 2.8E-27 193.4 17.3 166 163-360 6-176 (298)
13 COG2262 HflX GTPases [General 99.9 9E-23 1.9E-27 201.8 15.5 202 123-357 152-357 (411)
14 TIGR00436 era GTP-binding prot 99.9 1.3E-21 2.9E-26 193.2 19.5 162 373-548 2-163 (270)
15 PF02421 FeoB_N: Ferrous iron 99.9 3.9E-22 8.4E-27 177.1 13.1 151 164-351 1-156 (156)
16 PRK09518 bifunctional cytidyla 99.9 3.1E-20 6.8E-25 206.4 30.9 161 371-548 275-435 (712)
17 TIGR03156 GTP_HflX GTP-binding 99.9 1.4E-21 3E-26 198.6 17.7 189 133-354 159-350 (351)
18 KOG0084 GTPase Rab1/YPT1, smal 99.9 1.6E-21 3.5E-26 173.4 14.0 158 370-548 8-171 (205)
19 PRK15494 era GTPase Era; Provi 99.9 6.8E-21 1.5E-25 193.4 19.8 163 371-548 52-215 (339)
20 cd01895 EngA2 EngA2 subfamily. 99.9 1.6E-20 3.5E-25 172.5 20.1 173 371-548 2-174 (174)
21 COG0486 ThdF Predicted GTPase 99.9 2.7E-21 5.8E-26 194.9 15.9 163 162-358 216-378 (454)
22 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 3.9E-21 8.5E-26 170.0 13.7 157 371-548 22-184 (221)
23 TIGR03156 GTP_HflX GTP-binding 99.9 2E-20 4.3E-25 190.1 20.1 160 370-548 188-351 (351)
24 cd04171 SelB SelB subfamily. 99.9 2.9E-20 6.2E-25 169.4 18.9 158 373-547 2-164 (164)
25 PRK05291 trmE tRNA modificatio 99.9 2.2E-20 4.8E-25 196.4 18.9 157 369-548 213-369 (449)
26 KOG0092 GTPase Rab5/YPT51 and 99.8 1.6E-20 3.4E-25 166.5 13.6 157 371-548 5-166 (200)
27 PRK11058 GTPase HflX; Provisio 99.8 2.5E-20 5.5E-25 193.6 17.1 196 129-356 163-362 (426)
28 TIGR00436 era GTP-binding prot 99.8 4.6E-20 1E-24 182.3 18.0 161 165-358 2-166 (270)
29 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-19 2.5E-24 164.1 18.4 157 375-548 1-157 (157)
30 PRK12299 obgE GTPase CgtA; Rev 99.8 9.1E-20 2E-24 183.8 19.5 166 369-548 156-327 (335)
31 PRK00089 era GTPase Era; Revie 99.8 1.2E-19 2.7E-24 181.6 20.1 166 371-548 5-170 (292)
32 KOG0078 GTP-binding protein SE 99.8 4.7E-20 1E-24 166.8 15.1 158 369-547 10-172 (207)
33 cd01898 Obg Obg subfamily. Th 99.8 1.1E-19 2.4E-24 166.8 18.0 162 373-548 2-170 (170)
34 cd01858 NGP_1 NGP-1. Autoanti 99.8 1.4E-19 3.1E-24 164.0 17.3 153 266-430 2-157 (157)
35 cd01897 NOG NOG1 is a nucleola 99.8 1.6E-19 3.4E-24 165.5 17.7 161 372-548 1-167 (168)
36 cd04120 Rab12 Rab12 subfamily. 99.8 9.7E-20 2.1E-24 171.4 16.7 156 373-548 2-162 (202)
37 PRK15494 era GTPase Era; Provi 99.8 1E-19 2.2E-24 184.8 17.9 166 162-359 51-219 (339)
38 PF00009 GTP_EFTU: Elongation 99.8 5.9E-20 1.3E-24 171.7 13.6 160 371-548 3-186 (188)
39 PRK03003 GTP-binding protein D 99.8 2.5E-19 5.3E-24 190.6 19.3 161 371-548 38-198 (472)
40 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4E-19 8.7E-24 185.7 20.4 159 369-548 201-359 (442)
41 cd01894 EngA1 EngA1 subfamily. 99.8 3.1E-19 6.7E-24 161.3 17.1 155 167-354 1-156 (157)
42 cd04142 RRP22 RRP22 subfamily. 99.8 2.8E-19 6.1E-24 168.2 17.3 162 373-547 2-172 (198)
43 PRK11058 GTPase HflX; Provisio 99.8 5E-19 1.1E-23 183.9 20.0 162 370-548 196-361 (426)
44 cd04164 trmE TrmE (MnmE, ThdF, 99.8 7.1E-19 1.5E-23 158.8 18.5 155 372-548 2-156 (157)
45 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.2E-19 1.4E-23 164.8 18.1 158 372-546 3-190 (195)
46 TIGR03594 GTPase_EngA ribosome 99.8 5.3E-19 1.1E-23 187.0 19.7 159 373-548 1-159 (429)
47 cd01890 LepA LepA subfamily. 99.8 6.3E-19 1.4E-23 163.3 17.8 157 373-548 2-176 (179)
48 PRK12298 obgE GTPase CgtA; Rev 99.8 4.5E-19 9.8E-24 182.2 18.4 164 371-548 159-332 (390)
49 KOG0394 Ras-related GTPase [Ge 99.8 1.3E-19 2.9E-24 158.7 12.0 160 370-547 8-176 (210)
50 TIGR02729 Obg_CgtA Obg family 99.8 5.8E-19 1.3E-23 177.8 17.9 165 369-548 155-328 (329)
51 cd01878 HflX HflX subfamily. 99.8 4.7E-19 1E-23 168.0 16.1 163 160-354 38-203 (204)
52 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.6E-18 3.5E-23 158.6 18.6 157 373-548 2-165 (168)
53 COG0218 Predicted GTPase [Gene 99.8 1.9E-18 4.2E-23 156.4 18.2 172 155-356 16-197 (200)
54 cd01878 HflX HflX subfamily. 99.8 2E-18 4.2E-23 163.7 19.1 162 369-548 39-204 (204)
55 PRK12299 obgE GTPase CgtA; Rev 99.8 1.1E-18 2.5E-23 175.8 18.4 166 161-358 156-330 (335)
56 cd04133 Rop_like Rop subfamily 99.8 8.1E-19 1.8E-23 161.7 15.9 158 372-548 2-172 (176)
57 cd04121 Rab40 Rab40 subfamily. 99.8 1.6E-18 3.4E-23 161.6 17.7 156 371-547 6-165 (189)
58 cd01879 FeoB Ferrous iron tran 99.8 8.1E-19 1.8E-23 158.9 15.4 156 376-548 1-156 (158)
59 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.6E-18 3.4E-23 164.0 17.9 156 373-548 2-167 (201)
60 cd01889 SelB_euk SelB subfamil 99.8 1.4E-18 3.1E-23 163.0 17.5 161 373-547 2-184 (192)
61 cd01897 NOG NOG1 is a nucleola 99.8 1.3E-18 2.9E-23 159.3 16.7 161 164-355 1-167 (168)
62 cd04163 Era Era subfamily. Er 99.8 4.4E-18 9.5E-23 154.9 20.0 166 371-548 3-168 (168)
63 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.5E-18 5.5E-23 156.7 17.8 154 372-548 3-163 (164)
64 cd04136 Rap_like Rap-like subf 99.8 1.1E-18 2.4E-23 158.9 15.4 155 372-548 2-162 (163)
65 cd04140 ARHI_like ARHI subfami 99.8 1.6E-18 3.6E-23 158.4 16.5 154 372-547 2-163 (165)
66 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.4E-18 3E-23 161.1 15.9 158 371-547 5-178 (182)
67 PRK12297 obgE GTPase CgtA; Rev 99.8 2.2E-18 4.8E-23 177.9 18.9 160 371-548 158-326 (424)
68 cd01864 Rab19 Rab19 subfamily. 99.8 3.5E-18 7.5E-23 156.2 18.1 157 371-548 3-165 (165)
69 PRK05291 trmE tRNA modificatio 99.8 7.8E-19 1.7E-23 184.8 15.7 156 163-356 215-370 (449)
70 PRK09866 hypothetical protein; 99.8 7.7E-18 1.7E-22 175.9 22.7 118 419-546 229-350 (741)
71 cd01874 Cdc42 Cdc42 subfamily. 99.8 2E-18 4.4E-23 159.4 16.0 159 372-547 2-173 (175)
72 cd01867 Rab8_Rab10_Rab13_like 99.8 3.2E-18 6.9E-23 156.8 17.1 157 371-548 3-164 (167)
73 PRK00093 GTP-binding protein D 99.8 3.1E-18 6.7E-23 181.3 19.5 158 372-546 2-159 (435)
74 cd04127 Rab27A Rab27a subfamil 99.8 2.9E-18 6.3E-23 159.1 17.0 156 371-547 4-175 (180)
75 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2E-18 4.4E-23 165.2 16.3 159 370-547 12-186 (232)
76 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.6E-18 7.7E-23 156.3 17.2 156 372-548 3-163 (166)
77 cd04134 Rho3 Rho3 subfamily. 99.8 1.4E-18 3.1E-23 162.5 14.9 160 373-548 2-173 (189)
78 PRK12296 obgE GTPase CgtA; Rev 99.8 2.3E-18 5E-23 179.8 17.8 164 369-548 157-339 (500)
79 cd04109 Rab28 Rab28 subfamily. 99.8 3.3E-18 7.2E-23 163.4 17.4 155 373-548 2-165 (215)
80 PRK00089 era GTPase Era; Revie 99.8 3.1E-18 6.8E-23 171.5 17.9 164 163-358 5-173 (292)
81 cd04131 Rnd Rnd subfamily. Th 99.8 3E-18 6.5E-23 158.5 16.2 157 372-547 2-174 (178)
82 cd04175 Rap1 Rap1 subgroup. T 99.8 2.3E-18 5E-23 157.2 15.3 155 372-548 2-162 (164)
83 cd04122 Rab14 Rab14 subfamily. 99.8 4.9E-18 1.1E-22 155.4 17.2 154 372-547 3-162 (166)
84 TIGR03596 GTPase_YlqF ribosome 99.8 4.7E-18 1E-22 168.1 18.2 162 264-433 13-176 (276)
85 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 5E-18 1.1E-22 156.0 17.1 157 373-548 2-164 (170)
86 KOG0098 GTPase Rab2, small G p 99.8 2E-18 4.2E-23 151.7 13.6 155 371-546 6-165 (216)
87 cd04117 Rab15 Rab15 subfamily. 99.8 4.5E-18 9.8E-23 154.9 16.6 155 373-548 2-161 (161)
88 cd00881 GTP_translation_factor 99.8 5.9E-18 1.3E-22 157.9 17.5 158 373-548 1-186 (189)
89 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.1E-18 4.6E-23 163.7 14.5 151 373-539 1-184 (208)
90 cd01865 Rab3 Rab3 subfamily. 99.8 7.7E-18 1.7E-22 154.0 17.7 156 372-548 2-162 (165)
91 cd04144 Ras2 Ras2 subfamily. 99.8 4.2E-18 9.1E-23 159.5 16.3 153 373-548 1-162 (190)
92 smart00173 RAS Ras subfamily o 99.8 6E-18 1.3E-22 154.3 17.0 154 373-548 2-161 (164)
93 PRK12296 obgE GTPase CgtA; Rev 99.8 3.7E-18 8.1E-23 178.2 17.4 167 161-359 157-343 (500)
94 cd01875 RhoG RhoG subfamily. 99.8 4.3E-18 9.3E-23 159.5 16.1 161 372-548 4-176 (191)
95 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 6.8E-18 1.5E-22 155.4 17.2 153 372-547 3-162 (172)
96 cd04128 Spg1 Spg1p. Spg1p (se 99.8 5.5E-18 1.2E-22 157.4 16.5 158 373-547 2-164 (182)
97 cd01898 Obg Obg subfamily. Th 99.8 4.1E-18 8.9E-23 156.4 15.5 158 165-354 2-169 (170)
98 cd04106 Rab23_lke Rab23-like s 99.8 8.3E-18 1.8E-22 153.0 17.4 154 373-547 2-161 (162)
99 cd04124 RabL2 RabL2 subfamily. 99.8 6E-18 1.3E-22 154.1 16.4 151 373-547 2-156 (161)
100 cd01891 TypA_BipA TypA (tyrosi 99.8 8.1E-18 1.7E-22 158.2 17.8 148 372-538 3-171 (194)
101 PRK12297 obgE GTPase CgtA; Rev 99.8 5.6E-18 1.2E-22 174.9 17.8 164 162-358 157-329 (424)
102 PRK09563 rbgA GTPase YlqF; Rev 99.8 8.1E-18 1.8E-22 167.3 18.3 162 264-433 16-179 (287)
103 cd04138 H_N_K_Ras_like H-Ras/N 99.8 9.6E-18 2.1E-22 152.3 17.3 154 372-548 2-161 (162)
104 cd04171 SelB SelB subfamily. 99.8 6.5E-18 1.4E-22 153.9 16.2 149 165-352 2-162 (164)
105 cd01861 Rab6 Rab6 subfamily. 99.8 1.2E-17 2.5E-22 151.9 17.8 155 373-548 2-161 (161)
106 cd04112 Rab26 Rab26 subfamily. 99.8 6.8E-18 1.5E-22 158.3 16.7 156 373-548 2-162 (191)
107 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 7.5E-18 1.6E-22 149.7 16.0 135 264-431 3-139 (141)
108 PRK00454 engB GTP-binding prot 99.8 1.2E-17 2.5E-22 157.2 18.2 170 369-549 22-194 (196)
109 cd01849 YlqF_related_GTPase Yl 99.8 6E-18 1.3E-22 152.9 15.6 151 274-430 1-155 (155)
110 cd04119 RJL RJL (RabJ-Like) su 99.8 1.3E-17 2.8E-22 152.4 17.9 155 373-548 2-166 (168)
111 cd01881 Obg_like The Obg-like 99.8 5.2E-18 1.1E-22 156.5 15.4 159 376-548 1-176 (176)
112 KOG0087 GTPase Rab11/YPT3, sma 99.8 2.5E-18 5.5E-23 154.6 12.7 155 370-546 13-173 (222)
113 cd04164 trmE TrmE (MnmE, ThdF, 99.8 7.3E-18 1.6E-22 152.2 15.9 155 164-355 2-156 (157)
114 cd04126 Rab20 Rab20 subfamily. 99.8 6.8E-18 1.5E-22 160.7 16.4 153 373-547 2-188 (220)
115 TIGR03598 GTPase_YsxC ribosome 99.8 1E-17 2.3E-22 155.3 17.2 158 369-538 16-179 (179)
116 smart00174 RHO Rho (Ras homolo 99.8 5.1E-18 1.1E-22 156.4 15.0 159 374-548 1-171 (174)
117 cd01868 Rab11_like Rab11-like. 99.8 1.5E-17 3.2E-22 152.0 17.9 156 372-548 4-164 (165)
118 cd01866 Rab2 Rab2 subfamily. 99.8 1.5E-17 3.2E-22 152.6 17.9 157 371-548 4-165 (168)
119 cd04176 Rap2 Rap2 subgroup. T 99.8 5E-18 1.1E-22 154.8 14.6 155 372-548 2-162 (163)
120 cd01871 Rac1_like Rac1-like su 99.8 7.7E-18 1.7E-22 155.4 15.8 159 372-547 2-173 (174)
121 PRK04213 GTP-binding protein; 99.8 1.6E-17 3.5E-22 157.0 18.4 164 371-548 9-191 (201)
122 KOG0095 GTPase Rab30, small G 99.8 2.1E-18 4.5E-23 145.4 10.7 156 371-547 7-167 (213)
123 TIGR02729 Obg_CgtA Obg family 99.8 9.5E-18 2.1E-22 169.1 17.7 163 161-355 155-328 (329)
124 cd01895 EngA2 EngA2 subfamily. 99.8 2.1E-17 4.5E-22 151.7 18.5 162 163-353 2-172 (174)
125 cd04143 Rhes_like Rhes_like su 99.8 7.4E-18 1.6E-22 163.6 15.9 154 373-548 2-170 (247)
126 cd01859 MJ1464 MJ1464. This f 99.8 2.1E-17 4.6E-22 149.6 17.9 148 267-430 7-156 (156)
127 PF00009 GTP_EFTU: Elongation 99.8 3.6E-18 7.8E-23 159.7 13.2 154 163-356 3-187 (188)
128 COG0532 InfB Translation initi 99.8 1.2E-17 2.7E-22 170.8 18.1 155 161-356 3-170 (509)
129 TIGR02528 EutP ethanolamine ut 99.8 5.8E-18 1.2E-22 150.7 13.9 140 373-545 2-141 (142)
130 KOG0080 GTPase Rab18, small G 99.8 3.2E-18 7E-23 146.2 11.5 155 371-546 11-171 (209)
131 cd04116 Rab9 Rab9 subfamily. 99.8 1.7E-17 3.7E-22 152.4 17.4 156 371-547 5-169 (170)
132 cd01893 Miro1 Miro1 subfamily. 99.8 1.7E-17 3.8E-22 151.8 17.4 157 373-548 2-163 (166)
133 cd04110 Rab35 Rab35 subfamily. 99.8 1.6E-17 3.5E-22 156.7 17.5 156 371-547 6-165 (199)
134 TIGR00487 IF-2 translation ini 99.8 1.5E-17 3.3E-22 179.0 19.3 159 369-546 85-247 (587)
135 cd04132 Rho4_like Rho4-like su 99.8 1.5E-17 3.2E-22 155.4 16.8 159 373-548 2-166 (187)
136 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.8E-17 6E-22 149.9 18.2 156 373-548 2-163 (164)
137 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 9.6E-18 2.1E-22 156.1 15.3 155 371-548 3-169 (183)
138 cd04160 Arfrp1 Arfrp1 subfamil 99.8 8.2E-18 1.8E-22 153.9 14.6 156 373-546 1-166 (167)
139 cd01856 YlqF YlqF. Proteins o 99.8 2.7E-17 5.9E-22 151.2 18.1 158 264-430 11-170 (171)
140 cd04111 Rab39 Rab39 subfamily. 99.8 2E-17 4.4E-22 157.3 17.7 155 372-547 3-164 (211)
141 PTZ00369 Ras-like protein; Pro 99.8 1.7E-17 3.6E-22 155.3 16.7 156 371-548 5-166 (189)
142 cd04154 Arl2 Arl2 subfamily. 99.8 1.3E-17 2.8E-22 153.7 15.7 150 371-546 14-172 (173)
143 PRK12298 obgE GTPase CgtA; Rev 99.8 1.1E-17 2.3E-22 172.1 16.6 165 162-358 158-335 (390)
144 COG1084 Predicted GTPase [Gene 99.8 2.9E-17 6.3E-22 158.0 18.4 162 161-354 166-334 (346)
145 cd04149 Arf6 Arf6 subfamily. 99.8 2.4E-17 5.1E-22 151.2 17.1 150 371-546 9-167 (168)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.5E-17 3.3E-22 152.1 15.8 152 164-356 1-166 (168)
147 cd00877 Ran Ran (Ras-related n 99.8 1.2E-17 2.7E-22 152.8 15.1 153 373-548 2-158 (166)
148 PLN03110 Rab GTPase; Provision 99.8 1.9E-17 4.1E-22 158.2 16.9 157 371-548 12-173 (216)
149 PLN03071 GTP-binding nuclear p 99.8 1.2E-17 2.6E-22 159.8 15.5 155 370-547 12-170 (219)
150 TIGR00475 selB selenocysteine- 99.8 1.5E-17 3.2E-22 180.0 18.0 158 373-548 2-165 (581)
151 cd04113 Rab4 Rab4 subfamily. 99.8 3.1E-17 6.6E-22 149.2 17.4 154 373-547 2-160 (161)
152 cd04157 Arl6 Arl6 subfamily. 99.8 2E-17 4.3E-22 150.4 16.1 148 373-546 1-161 (162)
153 PRK10512 selenocysteinyl-tRNA- 99.8 2.7E-17 5.8E-22 178.5 19.8 159 373-548 2-165 (614)
154 PLN03118 Rab family protein; P 99.8 2E-17 4.4E-22 157.6 16.7 156 371-548 14-176 (211)
155 COG2262 HflX GTPases [General 99.8 3.4E-17 7.3E-22 162.4 18.4 165 366-548 187-355 (411)
156 smart00175 RAB Rab subfamily o 99.8 4.7E-17 1E-21 148.2 17.8 155 373-548 2-161 (164)
157 cd01892 Miro2 Miro2 subfamily. 99.8 1.3E-17 2.8E-22 153.1 14.1 158 370-548 3-165 (169)
158 cd04150 Arf1_5_like Arf1-Arf5- 99.8 4.3E-17 9.4E-22 148.1 17.4 148 373-546 2-158 (159)
159 cd01860 Rab5_related Rab5-rela 99.8 4.5E-17 9.8E-22 148.3 17.4 156 372-548 2-162 (163)
160 PRK12317 elongation factor 1-a 99.8 1.4E-17 3.1E-22 175.2 15.9 154 370-539 5-195 (425)
161 PRK05306 infB translation init 99.7 2.5E-17 5.3E-22 181.3 18.2 158 369-546 288-449 (787)
162 KOG1423 Ras-like GTPase ERA [C 99.7 1.8E-17 4E-22 156.8 14.6 176 368-546 69-268 (379)
163 cd04103 Centaurin_gamma Centau 99.7 3.2E-17 7E-22 148.6 15.7 149 373-547 2-157 (158)
164 cd04151 Arl1 Arl1 subfamily. 99.7 2.7E-17 5.8E-22 149.2 15.0 152 373-546 1-157 (158)
165 cd04163 Era Era subfamily. Er 99.7 6.3E-17 1.4E-21 147.3 17.5 160 163-354 3-167 (168)
166 KOG1489 Predicted GTP-binding 99.7 1.2E-17 2.6E-22 159.0 12.9 161 161-353 194-364 (366)
167 KOG0093 GTPase Rab3, small G p 99.7 1.2E-17 2.7E-22 140.5 11.5 154 373-547 23-181 (193)
168 cd04115 Rab33B_Rab33A Rab33B/R 99.7 5.2E-17 1.1E-21 149.3 16.9 157 372-548 3-168 (170)
169 cd00880 Era_like Era (E. coli 99.7 8.6E-17 1.9E-21 144.9 18.1 163 376-548 1-163 (163)
170 cd01862 Rab7 Rab7 subfamily. 99.7 7.9E-17 1.7E-21 148.0 18.0 155 373-547 2-165 (172)
171 KOG0091 GTPase Rab39, small G 99.7 1.1E-17 2.3E-22 143.4 11.2 155 372-547 9-171 (213)
172 cd04130 Wrch_1 Wrch-1 subfamil 99.7 3.7E-17 8E-22 150.7 15.8 155 373-546 2-171 (173)
173 cd01855 YqeH YqeH. YqeH is an 99.7 3.1E-17 6.7E-22 153.6 15.4 147 263-430 25-190 (190)
174 CHL00071 tufA elongation facto 99.7 3.7E-17 7.9E-22 170.7 17.5 151 369-536 10-180 (409)
175 KOG0079 GTP-binding protein H- 99.7 8E-18 1.7E-22 141.8 9.9 154 373-547 10-167 (198)
176 KOG1489 Predicted GTP-binding 99.7 2.3E-17 5E-22 157.1 14.2 163 370-548 195-366 (366)
177 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 6E-17 1.3E-21 149.5 16.8 153 371-546 15-173 (174)
178 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3.8E-17 8.2E-22 170.9 17.4 159 162-356 202-360 (442)
179 cd04156 ARLTS1 ARLTS1 subfamil 99.7 7.9E-17 1.7E-21 146.3 17.4 153 373-546 1-159 (160)
180 TIGR03598 GTPase_YsxC ribosome 99.7 4.9E-17 1.1E-21 150.8 16.2 159 157-345 12-179 (179)
181 smart00177 ARF ARF-like small 99.7 5.3E-17 1.2E-21 149.9 16.4 156 371-548 13-173 (175)
182 CHL00189 infB translation init 99.7 3.5E-17 7.5E-22 178.5 17.3 160 369-547 242-408 (742)
183 cd04114 Rab30 Rab30 subfamily. 99.7 5.4E-17 1.2E-21 148.8 16.1 156 371-548 7-168 (169)
184 PRK09554 feoB ferrous iron tra 99.7 4.8E-17 1E-21 180.1 18.5 163 372-547 4-166 (772)
185 cd04146 RERG_RasL11_like RERG/ 99.7 3.1E-17 6.7E-22 149.9 14.2 154 373-548 1-163 (165)
186 cd04118 Rab24 Rab24 subfamily. 99.7 4.3E-17 9.3E-22 153.1 15.5 157 373-548 2-165 (193)
187 cd01889 SelB_euk SelB subfamil 99.7 3.9E-17 8.5E-22 153.2 15.2 152 165-356 2-186 (192)
188 cd04158 ARD1 ARD1 subfamily. 99.7 7.9E-17 1.7E-21 147.9 16.9 150 373-548 1-160 (169)
189 smart00176 RAN Ran (Ras-relate 99.7 3.5E-17 7.5E-22 153.8 14.6 149 377-548 1-153 (200)
190 cd04125 RabA_like RabA-like su 99.7 1.2E-16 2.5E-21 149.5 17.9 155 373-548 2-161 (188)
191 cd01883 EF1_alpha Eukaryotic e 99.7 3.8E-17 8.2E-22 156.4 14.7 151 373-538 1-194 (219)
192 PRK04213 GTP-binding protein; 99.7 1.4E-16 3E-21 150.6 18.3 165 162-357 8-193 (201)
193 cd01863 Rab18 Rab18 subfamily. 99.7 1.1E-16 2.3E-21 145.6 16.8 153 373-547 2-160 (161)
194 cd01879 FeoB Ferrous iron tran 99.7 7.1E-17 1.5E-21 146.1 15.4 150 168-354 1-155 (158)
195 PLN00223 ADP-ribosylation fact 99.7 1.3E-16 2.9E-21 148.0 17.4 152 371-548 17-177 (181)
196 cd00157 Rho Rho (Ras homology) 99.7 6.3E-17 1.4E-21 148.5 15.1 159 373-547 2-171 (171)
197 PRK12736 elongation factor Tu; 99.7 8.1E-17 1.7E-21 167.3 17.6 162 369-547 10-199 (394)
198 cd04124 RabL2 RabL2 subfamily. 99.7 6.6E-17 1.4E-21 147.2 14.9 154 164-356 1-158 (161)
199 cd04177 RSR1 RSR1 subgroup. R 99.7 9.4E-17 2E-21 147.2 16.0 155 372-547 2-162 (168)
200 COG0218 Predicted GTPase [Gene 99.7 2.3E-16 5.1E-21 142.9 18.0 168 369-548 22-196 (200)
201 cd04139 RalA_RalB RalA/RalB su 99.7 1.3E-16 2.9E-21 145.2 16.6 154 373-548 2-161 (164)
202 cd01888 eIF2_gamma eIF2-gamma 99.7 2E-16 4.3E-21 149.6 18.3 159 373-548 2-198 (203)
203 cd04135 Tc10 TC10 subfamily. 99.7 9.4E-17 2E-21 148.0 15.7 159 373-547 2-172 (174)
204 cd04123 Rab21 Rab21 subfamily. 99.7 2.2E-16 4.8E-21 143.3 17.7 155 373-548 2-161 (162)
205 cd01870 RhoA_like RhoA-like su 99.7 1.1E-16 2.4E-21 147.7 16.0 161 372-548 2-174 (175)
206 cd01881 Obg_like The Obg-like 99.7 2.6E-17 5.7E-22 151.8 11.8 154 168-353 1-174 (176)
207 cd00878 Arf_Arl Arf (ADP-ribos 99.7 8.6E-17 1.9E-21 145.8 14.7 152 373-546 1-157 (158)
208 cd01890 LepA LepA subfamily. 99.7 7.5E-17 1.6E-21 149.4 14.4 151 165-355 2-176 (179)
209 TIGR00437 feoB ferrous iron tr 99.7 7.1E-17 1.5E-21 174.9 16.4 153 378-547 1-153 (591)
210 TIGR00157 ribosome small subun 99.7 3.7E-17 7.9E-22 158.4 12.6 187 268-484 32-229 (245)
211 KOG1423 Ras-like GTPase ERA [C 99.7 7.5E-17 1.6E-21 152.7 14.1 171 160-357 69-272 (379)
212 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 9.6E-17 2.1E-21 152.9 15.1 159 372-546 2-173 (222)
213 cd04148 RGK RGK subfamily. Th 99.7 1.1E-16 2.4E-21 153.4 15.6 154 373-548 2-162 (221)
214 PRK15467 ethanolamine utilizat 99.7 1.3E-16 2.9E-21 144.5 15.3 143 373-548 3-146 (158)
215 PRK00454 engB GTP-binding prot 99.7 2.8E-16 6.2E-21 147.8 18.2 168 159-356 20-194 (196)
216 PRK05306 infB translation init 99.7 5.5E-17 1.2E-21 178.5 15.2 153 160-353 287-449 (787)
217 cd00881 GTP_translation_factor 99.7 1.1E-16 2.5E-21 149.2 15.3 152 165-356 1-187 (189)
218 COG0370 FeoB Fe2+ transport sy 99.7 9.8E-17 2.1E-21 168.8 16.2 159 372-547 4-162 (653)
219 cd00154 Rab Rab family. Rab G 99.7 2.2E-16 4.9E-21 142.3 16.6 153 373-546 2-159 (159)
220 TIGR01393 lepA GTP-binding pro 99.7 1.4E-16 3E-21 172.5 18.0 159 371-548 3-179 (595)
221 cd04147 Ras_dva Ras-dva subfam 99.7 2.1E-16 4.5E-21 149.1 17.0 155 373-548 1-162 (198)
222 cd01873 RhoBTB RhoBTB subfamil 99.7 1.4E-16 2.9E-21 149.4 15.4 156 372-547 3-194 (195)
223 TIGR00487 IF-2 translation ini 99.7 6.9E-17 1.5E-21 173.9 15.3 153 160-353 84-247 (587)
224 cd04161 Arl2l1_Arl13_like Arl2 99.7 2E-16 4.3E-21 145.0 15.9 152 373-546 1-166 (167)
225 COG1163 DRG Predicted GTPase [ 99.7 8.6E-17 1.9E-21 154.0 13.9 200 119-357 22-290 (365)
226 cd01891 TypA_BipA TypA (tyrosi 99.7 1.5E-16 3.2E-21 149.5 15.5 145 163-347 2-173 (194)
227 cd04142 RRP22 RRP22 subfamily. 99.7 2.2E-16 4.9E-21 148.5 16.6 162 164-356 1-174 (198)
228 PLN03108 Rab family protein; P 99.7 3.3E-16 7.2E-21 149.0 17.9 156 371-547 6-166 (210)
229 TIGR00231 small_GTP small GTP- 99.7 9.9E-17 2.1E-21 144.3 13.2 151 372-545 2-160 (161)
230 KOG0083 GTPase Rab26/Rab37, sm 99.7 4.2E-18 9.2E-23 140.8 3.7 153 375-547 1-158 (192)
231 cd04154 Arl2 Arl2 subfamily. 99.7 1.2E-16 2.5E-21 147.3 13.8 149 162-352 13-171 (173)
232 cd00879 Sar1 Sar1 subfamily. 99.7 3.9E-16 8.5E-21 146.1 17.5 152 371-548 19-190 (190)
233 KOG0086 GTPase Rab4, small G p 99.7 1.4E-16 3.1E-21 134.9 12.7 155 371-546 9-168 (214)
234 PTZ00133 ADP-ribosylation fact 99.7 3.3E-16 7.2E-21 145.5 16.5 152 371-548 17-177 (182)
235 PRK12735 elongation factor Tu; 99.7 2.9E-16 6.2E-21 163.3 17.9 162 369-547 10-201 (396)
236 COG0370 FeoB Fe2+ transport sy 99.7 1.4E-16 3.1E-21 167.6 15.6 157 163-356 3-164 (653)
237 TIGR00491 aIF-2 translation in 99.7 2.4E-16 5.2E-21 169.4 17.7 162 370-546 3-213 (590)
238 smart00178 SAR Sar1p-like memb 99.7 4.2E-16 9.2E-21 145.1 17.1 151 371-547 17-183 (184)
239 cd04165 GTPBP1_like GTPBP1-lik 99.7 3E-16 6.5E-21 150.0 16.4 158 373-547 1-221 (224)
240 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.1E-16 4.6E-21 144.3 14.6 152 374-546 2-163 (164)
241 TIGR00491 aIF-2 translation in 99.7 3.4E-16 7.5E-21 168.2 18.5 154 162-356 3-216 (590)
242 cd04178 Nucleostemin_like Nucl 99.7 3.1E-16 6.6E-21 143.3 15.5 145 274-430 1-172 (172)
243 KOG1191 Mitochondrial GTPase [ 99.7 1.1E-16 2.5E-21 160.9 13.5 166 162-356 267-450 (531)
244 cd00876 Ras Ras family. The R 99.7 5.5E-16 1.2E-20 140.4 16.8 153 373-547 1-159 (160)
245 cd01861 Rab6 Rab6 subfamily. 99.7 3.7E-16 8E-21 142.0 15.7 151 165-354 2-160 (161)
246 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 4.3E-16 9.3E-21 146.6 16.4 170 373-548 2-183 (196)
247 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.3E-16 2.8E-21 146.0 12.5 151 165-353 1-166 (167)
248 cd04137 RheB Rheb (Ras Homolog 99.7 4.6E-16 1E-20 144.3 16.4 155 372-548 2-162 (180)
249 CHL00189 infB translation init 99.7 3E-16 6.5E-21 171.2 16.9 154 161-355 242-409 (742)
250 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.3E-16 5.1E-21 144.2 13.7 154 164-356 3-164 (166)
251 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.5E-16 3.2E-21 151.1 12.8 144 165-347 1-185 (208)
252 TIGR01394 TypA_BipA GTP-bindin 99.7 5E-16 1.1E-20 167.8 18.4 158 372-548 2-190 (594)
253 cd04120 Rab12 Rab12 subfamily. 99.7 1.9E-16 4.2E-21 149.0 13.3 153 165-356 2-163 (202)
254 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.4E-16 7.3E-21 142.6 14.5 152 164-355 3-163 (164)
255 KOG0092 GTPase Rab5/YPT51 and 99.7 1.6E-16 3.5E-21 141.1 11.8 158 163-359 5-170 (200)
256 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.5E-16 5.4E-21 143.0 13.5 152 164-355 2-161 (162)
257 PRK00049 elongation factor Tu; 99.7 5.5E-16 1.2E-20 161.0 17.8 162 369-547 10-201 (396)
258 cd04159 Arl10_like Arl10-like 99.7 5.1E-16 1.1E-20 140.1 15.4 153 374-547 2-159 (159)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.4E-16 5.2E-21 148.3 13.7 168 164-359 1-187 (196)
260 PRK12289 GTPase RsgA; Reviewed 99.7 3E-16 6.4E-21 158.7 15.2 173 268-469 85-269 (352)
261 cd04168 TetM_like Tet(M)-like 99.7 8.2E-16 1.8E-20 148.4 17.6 114 373-501 1-131 (237)
262 PLN03127 Elongation factor Tu; 99.7 8.6E-16 1.9E-20 161.0 19.1 162 369-547 59-250 (447)
263 cd00877 Ran Ran (Ras-related n 99.7 3.1E-16 6.7E-21 143.5 13.9 152 165-357 2-160 (166)
264 cd04136 Rap_like Rap-like subf 99.7 3.4E-16 7.4E-21 142.4 14.1 151 164-354 2-161 (163)
265 PRK12288 GTPase RsgA; Reviewed 99.7 3.5E-16 7.6E-21 158.2 15.4 186 270-485 118-316 (347)
266 cd04149 Arf6 Arf6 subfamily. 99.7 2.7E-16 5.9E-21 144.1 13.4 148 163-352 9-166 (168)
267 cd04106 Rab23_lke Rab23-like s 99.7 1.7E-16 3.6E-21 144.4 11.9 150 165-353 2-160 (162)
268 COG1084 Predicted GTPase [Gene 99.7 1.3E-15 2.8E-20 146.7 18.3 164 369-547 166-334 (346)
269 TIGR00485 EF-Tu translation el 99.7 5E-16 1.1E-20 161.6 16.7 161 369-546 10-198 (394)
270 cd01896 DRG The developmentall 99.7 6.9E-16 1.5E-20 148.7 16.5 157 165-356 2-226 (233)
271 cd04121 Rab40 Rab40 subfamily. 99.7 4.1E-16 9E-21 145.3 14.5 156 163-357 6-168 (189)
272 cd04129 Rho2 Rho2 subfamily. 99.7 5.7E-16 1.2E-20 144.7 15.3 157 373-547 3-171 (187)
273 cd04119 RJL RJL (RabJ-Like) su 99.7 3.8E-16 8.2E-21 142.7 13.7 153 164-355 1-166 (168)
274 cd04175 Rap1 Rap1 subgroup. T 99.7 5.1E-16 1.1E-20 141.6 14.5 152 164-355 2-162 (164)
275 cd01865 Rab3 Rab3 subfamily. 99.7 4.1E-16 8.9E-21 142.5 13.8 154 164-356 2-163 (165)
276 cd01886 EF-G Elongation factor 99.7 5E-16 1.1E-20 152.5 15.3 143 373-534 1-160 (270)
277 KOG0410 Predicted GTP binding 99.7 8.1E-17 1.8E-21 153.4 9.2 188 130-357 146-342 (410)
278 cd04109 Rab28 Rab28 subfamily. 99.7 3.8E-16 8.3E-21 149.2 14.0 155 164-357 1-167 (215)
279 cd04112 Rab26 Rab26 subfamily. 99.7 4.8E-16 1E-20 145.7 14.4 157 164-358 1-165 (191)
280 KOG0462 Elongation factor-type 99.7 4.3E-16 9.3E-21 158.0 14.7 160 369-547 58-233 (650)
281 cd04144 Ras2 Ras2 subfamily. 99.7 3.2E-16 6.8E-21 146.8 12.9 153 165-357 1-164 (190)
282 PRK05433 GTP-binding protein L 99.7 8.6E-16 1.9E-20 166.5 18.1 160 370-548 6-183 (600)
283 cd01868 Rab11_like Rab11-like. 99.7 4.9E-16 1.1E-20 141.9 13.8 153 163-354 3-163 (165)
284 smart00173 RAS Ras subfamily o 99.7 6.5E-16 1.4E-20 140.9 14.4 152 165-356 2-162 (164)
285 smart00175 RAB Rab subfamily o 99.7 5.3E-16 1.2E-20 141.3 13.8 154 164-356 1-162 (164)
286 cd01876 YihA_EngB The YihA (En 99.7 2E-15 4.4E-20 137.6 17.7 164 374-548 2-170 (170)
287 cd04151 Arl1 Arl1 subfamily. 99.7 5E-16 1.1E-20 140.9 13.5 147 165-353 1-157 (158)
288 PF01926 MMR_HSR1: 50S ribosom 99.7 4.6E-16 9.9E-21 133.4 12.5 116 165-312 1-116 (116)
289 cd04158 ARD1 ARD1 subfamily. 99.7 4.8E-16 1E-20 142.7 13.4 151 165-357 1-162 (169)
290 cd04176 Rap2 Rap2 subgroup. T 99.7 5.7E-16 1.2E-20 141.1 13.9 152 164-355 2-162 (163)
291 KOG0088 GTPase Rab21, small G 99.7 5.1E-17 1.1E-21 138.5 6.3 156 371-547 13-173 (218)
292 PTZ00369 Ras-like protein; Pro 99.7 9.9E-16 2.2E-20 143.3 15.7 156 163-358 5-169 (189)
293 cd04140 ARHI_like ARHI subfami 99.7 4.2E-16 9.2E-21 142.4 12.9 151 164-354 2-163 (165)
294 COG0536 Obg Predicted GTPase [ 99.7 6E-16 1.3E-20 149.6 14.3 164 371-548 159-332 (369)
295 TIGR00483 EF-1_alpha translati 99.7 6.7E-16 1.5E-20 162.5 16.1 155 369-539 5-197 (426)
296 cd04155 Arl3 Arl3 subfamily. 99.7 1.9E-15 4E-20 139.2 17.0 150 371-546 14-172 (173)
297 PRK15467 ethanolamine utilizat 99.7 5.3E-16 1.1E-20 140.6 13.1 143 165-357 3-148 (158)
298 cd01896 DRG The developmentall 99.7 2.7E-15 5.9E-20 144.5 18.7 153 373-548 2-225 (233)
299 PLN03126 Elongation factor Tu; 99.7 1.6E-15 3.6E-20 159.7 18.6 150 369-535 79-248 (478)
300 PRK10218 GTP-binding protein; 99.7 1.8E-15 3.9E-20 163.2 19.3 158 371-547 5-193 (607)
301 cd04118 Rab24 Rab24 subfamily. 99.7 9.3E-16 2E-20 144.0 15.0 155 164-357 1-167 (193)
302 cd01867 Rab8_Rab10_Rab13_like 99.7 1.1E-15 2.3E-20 140.1 15.0 155 163-356 3-165 (167)
303 cd01884 EF_Tu EF-Tu subfamily. 99.7 7.2E-16 1.6E-20 144.2 13.9 142 164-345 3-172 (195)
304 cd01874 Cdc42 Cdc42 subfamily. 99.7 7.1E-16 1.5E-20 142.4 13.7 150 164-353 2-172 (175)
305 cd04110 Rab35 Rab35 subfamily. 99.7 9.2E-16 2E-20 144.7 14.7 156 163-357 6-168 (199)
306 TIGR02034 CysN sulfate adenyly 99.7 7E-16 1.5E-20 160.8 15.2 151 373-539 2-187 (406)
307 TIGR00475 selB selenocysteine- 99.7 9.8E-16 2.1E-20 165.9 16.7 154 165-358 2-168 (581)
308 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.1E-15 2.3E-20 144.5 15.0 156 164-358 1-170 (201)
309 cd01888 eIF2_gamma eIF2-gamma 99.7 1.4E-15 3.1E-20 143.7 15.8 154 165-357 2-200 (203)
310 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 8.3E-16 1.8E-20 141.5 13.8 154 164-357 3-165 (172)
311 PF00071 Ras: Ras family; Int 99.7 1.2E-15 2.6E-20 138.8 14.7 154 373-547 1-159 (162)
312 cd01864 Rab19 Rab19 subfamily. 99.7 1.4E-15 3E-20 138.9 15.1 153 163-354 3-164 (165)
313 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 1.1E-15 2.4E-20 135.7 13.7 159 163-360 22-189 (221)
314 cd01860 Rab5_related Rab5-rela 99.7 5.8E-16 1.3E-20 141.0 12.5 152 164-355 2-162 (163)
315 PTZ00141 elongation factor 1- 99.7 1.1E-15 2.4E-20 160.5 16.3 162 370-546 6-222 (446)
316 cd04133 Rop_like Rop subfamily 99.7 1.2E-15 2.7E-20 140.5 14.7 152 164-355 2-172 (176)
317 cd04157 Arl6 Arl6 subfamily. 99.7 1E-15 2.2E-20 139.2 13.9 146 165-352 1-160 (162)
318 cd01866 Rab2 Rab2 subfamily. 99.7 1.5E-15 3.3E-20 139.2 15.2 154 163-355 4-165 (168)
319 TIGR03597 GTPase_YqeH ribosome 99.7 9.3E-16 2E-20 157.0 15.1 208 265-501 56-281 (360)
320 smart00178 SAR Sar1p-like memb 99.7 9.8E-16 2.1E-20 142.7 14.0 151 162-354 16-183 (184)
321 PRK09554 feoB ferrous iron tra 99.7 1.2E-15 2.6E-20 169.1 16.7 160 163-355 3-167 (772)
322 cd04127 Rab27A Rab27a subfamil 99.7 1.5E-15 3.3E-20 140.8 14.8 154 163-355 4-176 (180)
323 PRK04004 translation initiatio 99.7 2.9E-15 6.3E-20 161.8 18.9 162 369-546 4-215 (586)
324 cd04132 Rho4_like Rho4-like su 99.7 9.9E-16 2.1E-20 143.0 13.4 155 164-358 1-169 (187)
325 PRK05124 cysN sulfate adenylyl 99.7 1.5E-15 3.2E-20 160.7 16.3 156 369-540 25-216 (474)
326 cd01862 Rab7 Rab7 subfamily. 99.7 1.6E-15 3.4E-20 139.3 14.5 155 164-357 1-168 (172)
327 cd01885 EF2 EF2 (for archaea a 99.7 4.1E-15 8.9E-20 141.5 17.6 113 373-499 2-138 (222)
328 COG1163 DRG Predicted GTPase [ 99.7 8.6E-16 1.9E-20 147.2 12.9 156 371-549 63-289 (365)
329 cd04134 Rho3 Rho3 subfamily. 99.7 1.3E-15 2.8E-20 142.6 13.8 154 164-357 1-175 (189)
330 cd04126 Rab20 Rab20 subfamily. 99.7 9.7E-16 2.1E-20 145.9 13.2 152 164-357 1-191 (220)
331 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.7E-15 3.6E-20 137.6 14.1 146 165-352 2-157 (159)
332 COG0532 InfB Translation initi 99.7 1.1E-15 2.4E-20 156.6 14.4 159 369-546 3-167 (509)
333 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.2E-15 2.6E-20 140.8 13.3 149 163-353 15-173 (174)
334 cd04139 RalA_RalB RalA/RalB su 99.7 1.6E-15 3.4E-20 138.0 14.0 152 165-356 2-162 (164)
335 cd01893 Miro1 Miro1 subfamily. 99.7 1.5E-15 3.2E-20 139.0 13.8 150 165-355 2-163 (166)
336 cd04101 RabL4 RabL4 (Rab-like4 99.7 1E-15 2.2E-20 139.5 12.6 153 164-354 1-162 (164)
337 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.6E-15 3.4E-20 141.2 14.0 154 163-356 3-170 (183)
338 cd04122 Rab14 Rab14 subfamily. 99.7 2.4E-15 5.2E-20 137.6 15.0 152 164-355 3-163 (166)
339 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.2E-15 2.6E-20 140.2 13.0 154 165-357 2-166 (170)
340 PF01926 MMR_HSR1: 50S ribosom 99.7 1.6E-15 3.4E-20 130.1 12.9 116 373-495 1-116 (116)
341 smart00174 RHO Rho (Ras homolo 99.7 1.4E-15 3.1E-20 140.1 13.5 150 166-355 1-171 (174)
342 cd01871 Rac1_like Rac1-like su 99.7 1.6E-15 3.4E-20 139.9 13.6 150 164-353 2-172 (174)
343 PLN03071 GTP-binding nuclear p 99.7 1.1E-15 2.4E-20 146.2 13.0 156 162-357 12-173 (219)
344 KOG1707 Predicted Ras related/ 99.6 9.5E-15 2.1E-19 149.7 20.3 152 370-547 424-581 (625)
345 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.1E-15 2.4E-20 138.7 12.3 146 165-352 1-158 (160)
346 COG0536 Obg Predicted GTPase [ 99.6 2.2E-15 4.7E-20 145.7 14.7 165 163-359 159-336 (369)
347 PLN03118 Rab family protein; P 99.6 9E-16 2E-20 146.2 12.1 156 162-357 13-178 (211)
348 cd01892 Miro2 Miro2 subfamily. 99.6 2.8E-15 6E-20 137.6 14.8 152 163-355 4-165 (169)
349 smart00177 ARF ARF-like small 99.6 3.3E-15 7.2E-20 137.9 15.3 151 163-355 13-173 (175)
350 cd04113 Rab4 Rab4 subfamily. 99.6 3.7E-15 8E-20 135.5 15.4 152 164-354 1-160 (161)
351 cd00879 Sar1 Sar1 subfamily. 99.6 2.5E-15 5.3E-20 140.7 14.4 150 163-354 19-189 (190)
352 PRK05506 bifunctional sulfate 99.6 1.7E-15 3.7E-20 166.7 15.5 153 371-539 24-211 (632)
353 cd04128 Spg1 Spg1p. Spg1p (se 99.6 2.6E-15 5.6E-20 139.4 14.2 154 164-357 1-167 (182)
354 KOG1145 Mitochondrial translat 99.6 3.4E-15 7.4E-20 151.4 16.0 164 367-546 149-313 (683)
355 cd01863 Rab18 Rab18 subfamily. 99.6 2.3E-15 5E-20 136.8 13.6 152 164-354 1-160 (161)
356 cd04147 Ras_dva Ras-dva subfam 99.6 1.4E-15 3E-20 143.4 12.6 152 165-356 1-163 (198)
357 cd00880 Era_like Era (E. coli 99.6 4.8E-15 1E-19 133.4 15.5 154 168-354 1-162 (163)
358 cd04131 Rnd Rnd subfamily. Th 99.6 2.6E-15 5.7E-20 138.8 13.9 150 164-353 2-173 (178)
359 cd04117 Rab15 Rab15 subfamily. 99.6 3.3E-15 7.1E-20 136.0 14.2 151 165-354 2-160 (161)
360 cd04167 Snu114p Snu114p subfam 99.6 3.1E-15 6.6E-20 142.7 14.4 160 373-546 2-208 (213)
361 cd01875 RhoG RhoG subfamily. 99.6 2.4E-15 5.2E-20 140.9 13.3 153 164-356 4-177 (191)
362 cd04146 RERG_RasL11_like RERG/ 99.6 3.6E-15 7.9E-20 136.2 14.1 152 165-355 1-163 (165)
363 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 2.7E-15 5.9E-20 139.1 13.3 152 162-353 4-177 (182)
364 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3.5E-15 7.6E-20 137.5 13.8 149 164-352 1-170 (173)
365 PLN00223 ADP-ribosylation fact 99.6 4.3E-15 9.3E-20 137.9 14.4 152 163-356 17-178 (181)
366 cd04123 Rab21 Rab21 subfamily. 99.6 4.6E-15 9.9E-20 134.6 14.3 153 164-355 1-161 (162)
367 cd00878 Arf_Arl Arf (ADP-ribos 99.6 4.4E-15 9.6E-20 134.5 14.2 147 165-353 1-157 (158)
368 cd00157 Rho Rho (Ras homology) 99.6 2.4E-15 5.3E-20 138.0 12.5 150 164-353 1-170 (171)
369 KOG1145 Mitochondrial translat 99.6 1.8E-15 3.9E-20 153.4 12.5 154 159-353 149-313 (683)
370 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 4.7E-15 1E-19 142.1 14.8 154 163-356 13-188 (232)
371 PRK12317 elongation factor 1-a 99.6 2.4E-15 5.3E-20 158.3 14.0 147 162-347 5-196 (425)
372 TIGR03680 eif2g_arch translati 99.6 4.5E-15 9.7E-20 154.8 15.8 160 371-547 4-194 (406)
373 cd04125 RabA_like RabA-like su 99.6 3.1E-15 6.7E-20 139.8 13.1 155 164-357 1-163 (188)
374 cd04115 Rab33B_Rab33A Rab33B/R 99.6 4.5E-15 9.7E-20 136.4 13.9 155 163-355 2-168 (170)
375 cd04135 Tc10 TC10 subfamily. 99.6 4.8E-15 1E-19 136.6 14.1 151 164-354 1-172 (174)
376 PRK04000 translation initiatio 99.6 6.7E-15 1.5E-19 153.4 16.8 160 371-547 9-199 (411)
377 PTZ00133 ADP-ribosylation fact 99.6 7.5E-15 1.6E-19 136.4 15.2 152 163-356 17-178 (182)
378 KOG0078 GTP-binding protein SE 99.6 4.8E-15 1E-19 134.4 13.3 158 161-357 10-175 (207)
379 PRK04004 translation initiatio 99.6 1.4E-14 3.1E-19 156.5 19.4 155 160-355 3-217 (586)
380 TIGR02528 EutP ethanolamine ut 99.6 6.1E-15 1.3E-19 131.1 13.6 136 165-352 2-141 (142)
381 cd00876 Ras Ras family. The R 99.6 8.8E-15 1.9E-19 132.4 14.9 150 165-354 1-159 (160)
382 cd04143 Rhes_like Rhes_like su 99.6 3.5E-15 7.6E-20 144.9 13.0 151 165-355 2-170 (247)
383 cd04114 Rab30 Rab30 subfamily. 99.6 8.7E-15 1.9E-19 134.1 14.8 154 162-354 6-167 (169)
384 cd00154 Rab Rab family. Rab G 99.6 5.6E-15 1.2E-19 133.1 13.3 150 164-352 1-158 (159)
385 COG1161 Predicted GTPases [Gen 99.6 8.2E-15 1.8E-19 147.4 15.7 162 264-433 26-190 (322)
386 cd01870 RhoA_like RhoA-like su 99.6 7.1E-15 1.5E-19 135.6 14.1 151 164-354 2-173 (175)
387 PRK10512 selenocysteinyl-tRNA- 99.6 8.7E-15 1.9E-19 159.0 17.0 153 165-357 2-167 (614)
388 TIGR00231 small_GTP small GTP- 99.6 2.9E-15 6.2E-20 134.7 11.2 150 164-352 2-160 (161)
389 KOG0084 GTPase Rab1/YPT1, smal 99.6 6.3E-15 1.4E-19 131.5 13.0 159 162-359 8-175 (205)
390 PLN03110 Rab GTPase; Provision 99.6 1.1E-14 2.4E-19 139.1 15.4 156 163-357 12-175 (216)
391 KOG0081 GTPase Rab27, small G 99.6 4.7E-16 1E-20 132.7 5.1 154 373-547 11-179 (219)
392 PRK00007 elongation factor G; 99.6 2.6E-15 5.5E-20 166.6 12.5 146 370-534 9-171 (693)
393 cd04155 Arl3 Arl3 subfamily. 99.6 1E-14 2.2E-19 134.3 13.9 150 162-353 13-172 (173)
394 KOG0394 Ras-related GTPase [Ge 99.6 8.6E-15 1.9E-19 128.7 12.6 160 161-359 7-181 (210)
395 cd04177 RSR1 RSR1 subgroup. R 99.6 1.3E-14 2.8E-19 133.0 14.5 152 164-355 2-163 (168)
396 TIGR00437 feoB ferrous iron tr 99.6 8.9E-15 1.9E-19 158.6 15.5 151 170-355 1-154 (591)
397 TIGR01394 TypA_BipA GTP-bindin 99.6 8.8E-15 1.9E-19 158.1 15.2 155 164-358 2-193 (594)
398 PRK00098 GTPase RsgA; Reviewed 99.6 1.1E-14 2.3E-19 145.5 14.8 184 270-483 78-273 (298)
399 TIGR01393 lepA GTP-binding pro 99.6 9.3E-15 2E-19 158.4 15.3 156 163-358 3-182 (595)
400 KOG1424 Predicted GTP-binding 99.6 9.3E-15 2E-19 147.7 13.9 168 262-433 164-372 (562)
401 cd01854 YjeQ_engC YjeQ/EngC. 99.6 1.2E-14 2.6E-19 144.4 14.6 185 270-484 76-271 (287)
402 cd04116 Rab9 Rab9 subfamily. 99.6 1.1E-14 2.3E-19 133.7 13.0 153 163-354 5-169 (170)
403 KOG0462 Elongation factor-type 99.6 1.2E-14 2.6E-19 147.6 14.1 160 161-360 58-239 (650)
404 cd04148 RGK RGK subfamily. Th 99.6 7.8E-15 1.7E-19 140.6 12.3 153 164-357 1-164 (221)
405 PRK13796 GTPase YqeH; Provisio 99.6 1.8E-14 4E-19 147.6 15.8 145 266-432 62-222 (365)
406 cd04111 Rab39 Rab39 subfamily. 99.6 1.4E-14 3E-19 137.8 13.7 157 163-358 2-168 (211)
407 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.4E-14 3E-19 132.7 13.2 146 165-352 1-165 (167)
408 KOG0097 GTPase Rab14, small G 99.6 1.7E-14 3.6E-19 120.7 12.3 153 372-546 12-170 (215)
409 cd01883 EF1_alpha Eukaryotic e 99.6 1.8E-14 3.9E-19 137.9 14.3 142 165-345 1-194 (219)
410 cd04137 RheB Rheb (Ras Homolog 99.6 1.3E-14 2.8E-19 134.6 13.0 155 164-358 2-165 (180)
411 PRK00741 prfC peptide chain re 99.6 3.5E-14 7.7E-19 151.5 18.0 117 370-501 9-146 (526)
412 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.1E-14 2.4E-19 132.9 12.0 146 166-352 2-162 (164)
413 PRK05433 GTP-binding protein L 99.6 2.5E-14 5.3E-19 155.3 16.8 157 162-358 6-186 (600)
414 PF10662 PduV-EutP: Ethanolami 99.6 1.8E-14 3.9E-19 125.1 12.7 137 164-352 2-142 (143)
415 PLN03108 Rab family protein; P 99.6 2.1E-14 4.5E-19 136.6 14.3 155 163-356 6-168 (210)
416 CHL00071 tufA elongation facto 99.6 1.6E-14 3.4E-19 150.9 14.6 142 162-343 11-180 (409)
417 cd01876 YihA_EngB The YihA (En 99.6 5.8E-14 1.2E-18 128.0 16.6 159 166-354 2-169 (170)
418 cd04165 GTPBP1_like GTPBP1-lik 99.6 3.7E-14 7.9E-19 135.6 15.8 148 165-352 1-219 (224)
419 smart00176 RAN Ran (Ras-relate 99.6 9.9E-15 2.2E-19 137.2 11.6 148 169-357 1-155 (200)
420 cd00882 Ras_like_GTPase Ras-li 99.6 3E-14 6.4E-19 126.8 14.2 151 376-546 1-157 (157)
421 cd04170 EF-G_bact Elongation f 99.6 5.4E-14 1.2E-18 138.9 17.4 114 373-501 1-131 (268)
422 PLN00043 elongation factor 1-a 99.6 2.5E-14 5.4E-19 150.2 15.8 155 370-539 6-203 (447)
423 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.9E-14 4E-19 137.2 13.5 152 164-355 2-175 (222)
424 KOG0395 Ras-related GTPase [Ge 99.6 1.6E-14 3.5E-19 134.7 12.7 155 371-547 3-163 (196)
425 PF00025 Arf: ADP-ribosylation 99.6 2.8E-14 6.1E-19 131.6 14.0 157 369-547 12-174 (175)
426 TIGR00484 EF-G translation elo 99.6 3E-14 6.5E-19 158.3 16.7 146 370-534 9-171 (689)
427 cd04169 RF3 RF3 subfamily. Pe 99.6 4.6E-14 1E-18 138.5 16.1 130 372-520 3-153 (267)
428 cd04168 TetM_like Tet(M)-like 99.6 4.8E-14 1E-18 136.1 15.9 113 165-317 1-130 (237)
429 cd04159 Arl10_like Arl10-like 99.6 5.3E-14 1.2E-18 126.8 15.3 147 166-353 2-158 (159)
430 PRK10218 GTP-binding protein; 99.6 2.7E-14 6E-19 154.1 15.6 157 162-358 4-197 (607)
431 PTZ00132 GTP-binding nuclear p 99.6 9E-14 2E-18 132.8 17.3 155 371-548 9-167 (215)
432 cd01886 EF-G Elongation factor 99.6 1.9E-14 4.2E-19 141.3 12.9 114 165-318 1-131 (270)
433 cd01899 Ygr210 Ygr210 subfamil 99.6 1.1E-13 2.5E-18 138.3 18.2 88 374-469 1-111 (318)
434 COG3596 Predicted GTPase [Gene 99.6 3E-14 6.4E-19 134.3 13.0 165 161-356 37-222 (296)
435 cd04103 Centaurin_gamma Centau 99.6 4.7E-14 1E-18 127.8 14.1 143 165-353 2-156 (158)
436 PRK12739 elongation factor G; 99.6 3.7E-14 8E-19 157.5 15.8 146 370-534 7-169 (691)
437 cd04102 RabL3 RabL3 (Rab-like3 99.6 4.5E-14 9.9E-19 132.6 14.1 146 373-535 2-176 (202)
438 COG1162 Predicted GTPases [Gen 99.6 3.3E-14 7.2E-19 137.5 13.3 172 270-469 77-260 (301)
439 COG5256 TEF1 Translation elong 99.6 5.7E-14 1.2E-18 139.5 15.1 153 371-539 7-201 (428)
440 PRK12736 elongation factor Tu; 99.6 4.6E-14 1E-18 146.7 15.2 155 162-356 11-201 (394)
441 COG0481 LepA Membrane GTPase L 99.6 2E-14 4.3E-19 143.7 11.7 159 370-547 8-184 (603)
442 PTZ00327 eukaryotic translatio 99.6 6.7E-14 1.5E-18 146.4 16.1 160 371-547 34-231 (460)
443 cd04104 p47_IIGP_like p47 (47- 99.6 1.3E-13 2.8E-18 129.7 16.4 164 372-548 2-183 (197)
444 KOG0073 GTP-binding ADP-ribosy 99.6 2E-13 4.3E-18 117.9 15.9 154 371-546 16-175 (185)
445 COG2229 Predicted GTPase [Gene 99.5 2E-13 4.2E-18 121.1 15.6 156 371-547 10-176 (187)
446 cd04129 Rho2 Rho2 subfamily. 99.5 9.8E-14 2.1E-18 129.6 14.5 153 164-356 2-173 (187)
447 TIGR03680 eif2g_arch translati 99.5 6.5E-14 1.4E-18 146.2 14.7 155 163-356 4-196 (406)
448 PLN03127 Elongation factor Tu; 99.5 1.4E-13 3.1E-18 144.3 16.8 155 162-356 60-252 (447)
449 KOG2423 Nucleolar GTPase [Gene 99.5 4.7E-14 1E-18 137.7 12.0 163 259-433 200-365 (572)
450 cd01899 Ygr210 Ygr210 subfamil 99.5 1E-13 2.2E-18 138.6 14.7 161 166-358 1-271 (318)
451 PRK12735 elongation factor Tu; 99.5 5.8E-14 1.3E-18 146.0 13.5 155 162-356 11-203 (396)
452 cd01873 RhoBTB RhoBTB subfamil 99.5 7.8E-14 1.7E-18 130.8 13.0 150 164-353 3-193 (195)
453 TIGR02034 CysN sulfate adenyly 99.5 8.6E-14 1.9E-18 145.1 14.3 144 164-346 1-187 (406)
454 KOG0098 GTPase Rab2, small G p 99.5 1.1E-13 2.3E-18 122.1 12.2 154 163-355 6-167 (216)
455 PRK05124 cysN sulfate adenylyl 99.5 8.2E-14 1.8E-18 147.5 13.8 148 161-347 25-216 (474)
456 PRK04000 translation initiatio 99.5 1.1E-13 2.3E-18 144.4 14.1 156 162-356 8-201 (411)
457 TIGR00503 prfC peptide chain r 99.5 2.8E-13 6.1E-18 144.7 17.5 116 370-500 10-146 (527)
458 KOG0080 GTPase Rab18, small G 99.5 4.6E-14 1E-18 120.9 9.2 156 163-359 11-177 (209)
459 PRK13351 elongation factor G; 99.5 2.3E-13 5.1E-18 151.6 17.5 117 370-501 7-140 (687)
460 KOG0079 GTP-binding protein H- 99.5 1.3E-13 2.8E-18 116.5 11.6 156 164-358 9-171 (198)
461 PF04548 AIG1: AIG1 family; I 99.5 2.1E-13 4.5E-18 129.7 14.5 169 373-548 2-185 (212)
462 PF00025 Arf: ADP-ribosylation 99.5 2.7E-13 5.8E-18 125.1 14.6 152 161-354 12-174 (175)
463 PRK00049 elongation factor Tu; 99.5 1.4E-13 3E-18 143.1 14.0 155 162-356 11-203 (396)
464 KOG1490 GTP-binding protein CR 99.5 1.3E-13 2.7E-18 138.8 13.0 169 369-547 166-339 (620)
465 TIGR00485 EF-Tu translation el 99.5 1.6E-13 3.4E-18 142.9 14.1 141 162-342 11-179 (394)
466 PRK05506 bifunctional sulfate 99.5 1.7E-13 3.8E-18 150.9 15.2 145 163-346 24-211 (632)
467 PF00071 Ras: Ras family; Int 99.5 8.1E-14 1.8E-18 126.7 10.3 152 165-355 1-160 (162)
468 PF04548 AIG1: AIG1 family; I 99.5 9.3E-14 2E-18 132.1 11.0 169 164-360 1-190 (212)
469 COG1217 TypA Predicted membran 99.5 2.8E-13 6.1E-18 135.1 14.6 161 371-547 5-193 (603)
470 COG3596 Predicted GTPase [Gene 99.5 3.5E-13 7.6E-18 127.1 14.5 169 370-548 38-221 (296)
471 PLN03126 Elongation factor Tu; 99.5 2.3E-13 5.1E-18 143.4 14.8 141 162-342 80-248 (478)
472 KOG0087 GTPase Rab11/YPT3, sma 99.5 1.9E-13 4.1E-18 123.4 12.0 154 163-355 14-175 (222)
473 cd04169 RF3 RF3 subfamily. Pe 99.5 4.3E-13 9.3E-18 131.7 15.4 116 163-318 2-138 (267)
474 TIGR00483 EF-1_alpha translati 99.5 2.6E-13 5.6E-18 142.9 14.1 146 162-346 6-197 (426)
475 PTZ00099 rab6; Provisional 99.5 3.6E-13 7.7E-18 124.1 13.3 128 401-548 9-141 (176)
476 PRK09602 translation-associate 99.5 1E-12 2.2E-17 135.5 18.0 89 372-468 2-113 (396)
477 PF10662 PduV-EutP: Ethanolami 99.5 4.3E-13 9.3E-18 116.5 12.8 139 373-545 3-142 (143)
478 KOG0073 GTP-binding ADP-ribosy 99.5 4.9E-13 1.1E-17 115.5 12.9 152 163-356 16-178 (185)
479 KOG0095 GTPase Rab30, small G 99.5 3.4E-13 7.4E-18 114.0 11.5 154 163-355 7-168 (213)
480 PTZ00258 GTP-binding protein; 99.5 1.5E-12 3.1E-17 132.7 18.3 92 369-468 19-126 (390)
481 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-12 3.4E-17 124.8 17.1 142 369-535 37-182 (225)
482 PTZ00132 GTP-binding nuclear p 99.5 9.4E-13 2E-17 125.8 15.4 154 162-356 8-168 (215)
483 KOG2484 GTPase [General functi 99.5 4.7E-13 1E-17 131.7 13.1 157 264-432 138-309 (435)
484 cd00882 Ras_like_GTPase Ras-li 99.5 2.5E-13 5.4E-18 120.8 9.7 146 168-352 1-156 (157)
485 PLN00023 GTP-binding protein; 99.5 6.6E-13 1.4E-17 130.9 13.1 117 370-501 20-166 (334)
486 PRK00007 elongation factor G; 99.5 3.5E-13 7.5E-18 149.7 12.6 140 162-341 9-171 (693)
487 cd04104 p47_IIGP_like p47 (47- 99.5 9.7E-13 2.1E-17 123.8 13.7 157 164-359 2-187 (197)
488 cd04170 EF-G_bact Elongation f 99.5 4.5E-13 9.8E-18 132.4 11.9 144 165-348 1-165 (268)
489 PTZ00141 elongation factor 1- 99.4 7.7E-13 1.7E-17 139.1 14.1 145 162-346 6-203 (446)
490 PTZ00327 eukaryotic translatio 99.4 1.1E-12 2.4E-17 137.4 15.0 158 161-357 32-234 (460)
491 COG0481 LepA Membrane GTPase L 99.4 5.7E-13 1.2E-17 133.4 12.1 159 162-360 8-190 (603)
492 cd04167 Snu114p Snu114p subfam 99.4 1.5E-12 3.2E-17 124.2 14.3 112 165-316 2-136 (213)
493 TIGR00484 EF-G translation elo 99.4 7.7E-13 1.7E-17 147.1 13.8 119 161-319 8-143 (689)
494 KOG0088 GTPase Rab21, small G 99.4 2.6E-13 5.7E-18 115.9 7.6 155 163-358 13-177 (218)
495 PRK12740 elongation factor G; 99.4 2E-12 4.4E-17 143.9 17.1 110 377-501 1-127 (668)
496 COG2895 CysN GTPases - Sulfate 99.4 1.1E-12 2.3E-17 127.1 12.5 152 371-538 6-192 (431)
497 KOG4252 GTP-binding protein [S 99.4 4.6E-14 1E-18 123.0 2.9 158 370-548 19-180 (246)
498 PRK09602 translation-associate 99.4 2.3E-12 5E-17 132.9 15.8 88 164-283 2-113 (396)
499 COG1100 GTPase SAR1 and relate 99.4 5.1E-12 1.1E-16 121.0 17.1 161 372-547 6-183 (219)
500 PRK12739 elongation factor G; 99.4 1.1E-12 2.5E-17 145.7 14.2 118 162-319 7-141 (691)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.5e-57 Score=451.03 Aligned_cols=346 Identities=52% Similarity=0.811 Sum_probs=305.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
|.|+|+|+||||||||+|+|+|+..+.+++.||+|++..++.+.|.+..+.+|||+|+.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~----------------- 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE----------------- 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-----------------
Confidence 789999999999999999999999999999999999999999999999999999999975321
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (549)
+.+...+..+++.++..||++|||+|++.+++..|..+.++|++. ++|+++|+||+|.... ....
T Consensus 67 ------------~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~--~kpviLvvNK~D~~~~-e~~~ 131 (444)
T COG1160 67 ------------DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS--KKPVILVVNKIDNLKA-EELA 131 (444)
T ss_pred ------------hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEEcccCchh-hhhH
Confidence 124455678999999999999999999999999999999999964 7999999999998743 3345
Q ss_pred HHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCC
Q 008909 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (549)
Q Consensus 324 ~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~ 402 (549)
.+++.+|+ .++++||.+|.|+.+|++.+...++ ... +..........+++++|.||+|||||+|+++|.++..+++.
T Consensus 132 ~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e-~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~ 209 (444)
T COG1160 132 YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDE-EEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDI 209 (444)
T ss_pred HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC-Ccc-cccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCC
Confidence 66888888 6899999999999999999998875 221 11111113467999999999999999999999999999999
Q ss_pred CCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHH
Q 008909 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI 482 (549)
Q Consensus 403 ~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l 482 (549)
+|||||.+...+. ++++++.++||+|+++...+. ...|.+++.++.+++..||++++|+|+++++++|+.+++..+
T Consensus 210 aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~---e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i 285 (444)
T COG1160 210 AGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT---ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLI 285 (444)
T ss_pred CCccccceeeeEE-ECCeEEEEEECCCCCcccccc---cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHH
Confidence 9999999999998 589999999999999887765 347889999999999999999999999999999999999999
Q ss_pred HHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 483 EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 483 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+.++++|||+||||+.... ...++.+.+++...+.+.++++++++||++|.|+.+||+.+.+++
T Consensus 286 ~~~g~~~vIvvNKWDl~~~~-~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 286 EEAGRGIVIVVNKWDLVEED-EATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred HHcCCCeEEEEEccccCCch-hhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 99999999999999998752 344567788899999999999999999999999999999998765
No 2
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=5.3e-46 Score=392.71 Aligned_cols=342 Identities=52% Similarity=0.822 Sum_probs=280.4
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+|+|++|||||||+|+|++.....+.+.+|+|++.....+.+++..+.+|||||+.....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~------------------ 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDD------------------ 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcch------------------
Confidence 48999999999999999999988778899999999999999999999999999999853211
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHH
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~ 324 (549)
.+...+..++..++..+|++++|+|++.+++..+..+..++++. ++|+++|+||+|+..... ...
T Consensus 63 ------------~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~-~~~ 127 (429)
T TIGR03594 63 ------------GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDA-VAA 127 (429)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCcccc-cHH
Confidence 12233456677888999999999999998888888888888875 899999999999875432 223
Q ss_pred HHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC
Q 008909 325 EFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS 403 (549)
Q Consensus 325 ~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~ 403 (549)
.+...++ +++++||++|.|+.++++.+...+...... ........+++++|.+|+|||||+|++++.....+.+.+
T Consensus 128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~---~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~ 204 (429)
T TIGR03594 128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEE---EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA 204 (429)
T ss_pred HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCccccc---ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC
Confidence 4556676 789999999999999999998877543211 111233568999999999999999999998877889999
Q ss_pred CceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHH
Q 008909 404 GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (549)
Q Consensus 404 gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~ 483 (549)
|||++.....+.. ++..+.+|||||+.++..+. ...+.+...++..+++.+|++|+|+|++++.+.++..++..+.
T Consensus 205 gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR03594 205 GTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVT---EGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLIL 280 (429)
T ss_pred CceECcEeEEEEE-CCcEEEEEECCCccccccch---hhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 9999988777764 67789999999998765432 2356666777888999999999999999999999999999999
Q ss_pred HhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 484 QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 484 ~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.++|+|+|+||||+... ....+.+...+.+.++...+.+++++||++|.|++++|+++.+.+
T Consensus 281 ~~~~~iiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 281 EAGKALVIVVNKWDLVKD--EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred HcCCcEEEEEECcccCCC--HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999721 222344556667777777788999999999999999999987754
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.2e-45 Score=391.63 Aligned_cols=343 Identities=40% Similarity=0.661 Sum_probs=270.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+|+|.+|||||||+|+|++.....+.+.+|+|.+.....+.+++..+.+|||||+.....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~---------------- 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK---------------- 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch----------------
Confidence 5899999999999999999999987677889999999999988889999999999999863111
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (549)
.+...+..++..++..+|++|+|+|++.+.+..+..+..+++.. ++|+++|+||+|+..... .
T Consensus 102 --------------~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~--~~piilV~NK~Dl~~~~~-~ 164 (472)
T PRK03003 102 --------------GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRS--GKPVILAANKVDDERGEA-D 164 (472)
T ss_pred --------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCccch-h
Confidence 11223445666788999999999999988877777788888764 899999999999864322 2
Q ss_pred HHHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecC
Q 008909 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (549)
Q Consensus 323 ~~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~ 401 (549)
...++..++ .++++||++|.|+.++++.+...+.+.... ........+|+++|.+|+|||||+|++++.....+++
T Consensus 165 ~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 165 AAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRV---GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred hHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccccccc---ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 223444555 468999999999999999998877542211 1111245799999999999999999999987777889
Q ss_pred CCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHH
Q 008909 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (549)
Q Consensus 402 ~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~ 481 (549)
.+|+|++.....+.. ++..+.+|||||+.+..... ...+.+...++..+++.+|++++|+|++++.+.++..++..
T Consensus 242 ~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~ 317 (472)
T PRK03003 242 VAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSM 317 (472)
T ss_pred CCCccCCcceEEEEE-CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999988777764 67789999999996543211 11234444445567899999999999999999999999999
Q ss_pred HHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 482 l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+...++|+|||+||||+...... ..+...+.+.+....+++++++||++|.||++||+.+.+++
T Consensus 318 ~~~~~~piIiV~NK~Dl~~~~~~---~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 318 VIEAGRALVLAFNKWDLVDEDRR---YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred HHHcCCCEEEEEECcccCChhHH---HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 98899999999999999753221 12334455566666778999999999999999999998765
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.1e-44 Score=382.92 Aligned_cols=341 Identities=53% Similarity=0.830 Sum_probs=276.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
++|+|+|++|||||||+|+|++.....+.+.+++|.+...+.+.+++..+.+|||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~----------------- 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD----------------- 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch-----------------
Confidence 689999999999999999999988778889999999999999999999999999999975111
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (549)
.+...+..++..++..+|++|+|+|++.+++..+..+..++++. +.|+++|+||+|+.... ...
T Consensus 65 -------------~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~~-~~~ 128 (435)
T PRK00093 65 -------------GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDEE-ADA 128 (435)
T ss_pred -------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccch-hhH
Confidence 01222345566778899999999999988888888888888876 89999999999975422 223
Q ss_pred HHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCC
Q 008909 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (549)
Q Consensus 324 ~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~ 402 (549)
.++...++ .++++||++|.|+.++++.+......... ........+|+++|.+|+|||||+|++++.....+.+.
T Consensus 129 ~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~ 204 (435)
T PRK00093 129 YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDI 204 (435)
T ss_pred HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCC
Confidence 44556666 48999999999999999998764322110 11123457999999999999999999999888889999
Q ss_pred CCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHH
Q 008909 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI 482 (549)
Q Consensus 403 ~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l 482 (549)
+|+|++.+...+.. ++..+.+|||||+.+...+. ...+.+...++.++++.+|++|+|+|++++.+.++..++..+
T Consensus 205 ~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~ 280 (435)
T PRK00093 205 AGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVT---EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLA 280 (435)
T ss_pred CCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchh---hHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999998777764 67889999999997754432 235566677788899999999999999999999999999999
Q ss_pred HHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 483 EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 483 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+.++|+++|+||||+.... ....+.+.+...+....+++++++||++|.|++++++.+.+.+
T Consensus 281 ~~~~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 281 LEAGRALVIVVNKWDLVDEK---TMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred HHcCCcEEEEEECccCCCHH---HHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999997432 2334556666777777788999999999999999999987653
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=3.2e-43 Score=389.58 Aligned_cols=347 Identities=38% Similarity=0.599 Sum_probs=271.8
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
...++|+|+|++|||||||+|+|++.....+.+.+|+|.+.......+++..+.+|||||+.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~-------------- 338 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE-------------- 338 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--------------
Confidence 345889999999999999999999988788899999999999888888999999999999864211
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
.+...+..++..++..+|++|+|+|++.++...+..+..+++.. ++|+++|+||+|+.....
T Consensus 339 ----------------~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 339 ----------------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA--GKPVVLAVNKIDDQASEY 400 (712)
T ss_pred ----------------cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccccchh
Confidence 11222445666788999999999999988888888888888765 899999999999865322
Q ss_pred HhHHHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeee
Q 008909 321 MQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIV 399 (549)
Q Consensus 321 ~~~~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~ 399 (549)
....++..++ .++++||++|.|+.++++.+...+....... .........+|+++|.+|+|||||+|++++.+...+
T Consensus 401 -~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~-~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v 478 (712)
T PRK09518 401 -DAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTS-GFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVV 478 (712)
T ss_pred -hHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccc-cccCCCCCcEEEEECCCCCCHHHHHHHHhCcccccc
Confidence 2233444554 4689999999999999999988775422110 000112347999999999999999999999877678
Q ss_pred cCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHH
Q 008909 400 SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIA 479 (549)
Q Consensus 400 ~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l 479 (549)
.+.+|||++.+...+.. ++.++.+|||||+.+..... ...+.+...++..+++.+|++++|+|++++.+.++..++
T Consensus 479 ~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~ 554 (712)
T PRK09518 479 NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM 554 (712)
T ss_pred CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH
Confidence 88999999998776654 67889999999986532211 112333444556678999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 480 ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 480 ~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+.+.++|+++|+||||+..... .+.+...+...+....+.+++++||++|.|+++|++.+.+++
T Consensus 555 ~~~~~~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 555 SMAVDAGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred HHHHHcCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 988888999999999999975322 122344455555666778999999999999999999998764
No 6
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.9e-25 Score=222.15 Aligned_cols=357 Identities=32% Similarity=0.339 Sum_probs=226.1
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhh-ccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT-TIG 242 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~-~~~ 242 (549)
+++.+.|.+++||++|-|. ...+.+.+.++.|.+...+...+..+.+...|+.|+.-.... -+...+..++ .-+
T Consensus 76 ~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~--avv~~~l~a~~~sg 150 (531)
T KOG1191|consen 76 RSVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSS--AVVVGVLTALGASG 150 (531)
T ss_pred cccccCCCCccccccccCh---hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEEecCc--cchhhHHHHhhhcc
Confidence 4566899999999999998 223556678899999988888888889999999998643322 2233333333 245
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (549)
.+|+......++...+.......+.......++|....++.......+...-.+.... .-++.++-+++.-.......+
T Consensus 151 ~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~-~~r~~lIe~~a~l~a~idf~e 229 (531)
T KOG1191|consen 151 IPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCF-GWRKILIEALAGLEARIDFEE 229 (531)
T ss_pred CCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhh-hHHHHHHHHHhccceeechhh
Confidence 6777777666666655544444444444556666666654332111111100000000 001111111111000000000
Q ss_pred HHHHHHcCCCceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCC
Q 008909 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (549)
Q Consensus 323 ~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~ 402 (549)
...++......++. ++..|++.+...+...... .......+|+++|.||+|||||+|.|...++..|++.
T Consensus 230 ~~~l~~~~t~~~~~------~~~~l~d~v~s~l~~~~~~----e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv 299 (531)
T KOG1191|consen 230 ERPLEEIETVEIFI------ESLSLLDDVLSHLNKADEI----ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV 299 (531)
T ss_pred cCchhhccchhhhh------HHHHHHHHHHHHHHhhhhH----HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC
Confidence 11111111111111 2233555555555433221 2223457999999999999999999999999999999
Q ss_pred CCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHH
Q 008909 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI 482 (549)
Q Consensus 403 ~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l 482 (549)
+|||||.+...+. .+|.++.|+||+|+++. .+..+|...+.++.+.+..||++++|+|+....++++..+.+.+
T Consensus 300 ~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~-----~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l 373 (531)
T KOG1191|consen 300 PGTTRDAIEAQVT-VNGVPVRLSDTAGIREE-----SNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARIL 373 (531)
T ss_pred CCcchhhheeEee-cCCeEEEEEeccccccc-----cCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHH
Confidence 9999999999998 59999999999999872 34678999999999999999999999999877888888877766
Q ss_pred HHh------------CCcEEEEEecccCCCC-CchhhhHHHHHHHHHHHhc--CCCCC-EEEEccccCCCHHHHHHHHHh
Q 008909 483 EQE------------GKGCLIVVNKWDTIPN-KNQQTATYYEQDVREKLRA--LDWAP-IVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 483 ~~~------------~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~l~~--~~~~~-~i~iSA~~g~~v~~L~~~l~~ 546 (549)
... ..|++++.||.|+... .+... ....+... ....+ ..++|++|++|++.|.+.+..
T Consensus 374 ~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~------~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 374 ETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK------IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred HHhccceEEEeccccccceEEEechhhccCccccccC------CceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 653 3789999999998764 11110 00011111 11223 445999999999999998866
Q ss_pred hh
Q 008909 547 SF 548 (549)
Q Consensus 547 ~~ 548 (549)
.+
T Consensus 448 ~~ 449 (531)
T KOG1191|consen 448 IV 449 (531)
T ss_pred HH
Confidence 43
No 7
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=9e-25 Score=225.51 Aligned_cols=211 Identities=24% Similarity=0.246 Sum_probs=160.3
Q ss_pred CCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeee------------------eCCceEEEEEccc
Q 008909 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF------------------WGEHEFMLVDTGG 220 (549)
Q Consensus 159 ~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~liDTpG 220 (549)
...+.|.|||+||.++|||.|++.|++.+ ++.+...|+|++.....+. +.-..+++|||||
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tN-VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTN-VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccc-cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 34578999999999999999999999987 7778888888877544332 2234689999999
Q ss_pred ccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHc
Q 008909 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN 300 (549)
Q Consensus 221 ~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~ 300 (549)
+++|.+++. +....||++|+|+|+++++.++..+.+++|+..
T Consensus 550 hEsFtnlRs--------------------------------------rgsslC~~aIlvvdImhGlepqtiESi~lLR~r 591 (1064)
T KOG1144|consen 550 HESFTNLRS--------------------------------------RGSSLCDLAILVVDIMHGLEPQTIESINLLRMR 591 (1064)
T ss_pred chhhhhhhh--------------------------------------ccccccceEEEEeehhccCCcchhHHHHHHHhc
Confidence 999877654 567889999999999999999999999999987
Q ss_pred cCCCeEEEEeccCCCCh-------h-----------h--------HHh-HHHHHHcC---------------CCceEeec
Q 008909 301 YMDKFIILAVNKCESPR-------K-----------G--------IMQ-VSEFWSLG---------------FSPLPISA 338 (549)
Q Consensus 301 ~~~~p~ivv~NK~D~~~-------~-----------~--------~~~-~~~~~~~~---------------~~~v~vSA 338 (549)
+.||||++||+|.+- . . ... ...|..+| ++++|+||
T Consensus 592 --ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA 669 (1064)
T KOG1144|consen 592 --KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSA 669 (1064)
T ss_pred --CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccc
Confidence 899999999999420 0 0 000 11122222 25799999
Q ss_pred cCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC
Q 008909 339 ISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE 418 (549)
Q Consensus 339 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~ 418 (549)
.+|+||.+|+.++.+..+.....+. .++ ..+-++++. +.+.+..|||+|++.++..+..
T Consensus 670 ~sGeGipdLl~llv~ltQk~m~~kl-----------~y~-------~ev~cTVlE---VKvieG~GtTIDViLvNG~L~e 728 (1064)
T KOG1144|consen 670 ISGEGIPDLLLLLVQLTQKTMVEKL-----------AYV-------DEVQCTVLE---VKVIEGHGTTIDVILVNGELHE 728 (1064)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHH-----------hhh-------hheeeEEEE---EEeecCCCceEEEEEEcceecc
Confidence 9999999999999988875443211 111 122222222 4566788999999999999999
Q ss_pred CCeEEEEeCCCcc
Q 008909 419 GQKFRLIDTAGIR 431 (549)
Q Consensus 419 ~~~i~l~DTpG~~ 431 (549)
|.+|+++...|-.
T Consensus 729 GD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 729 GDQIVVCGLQGPI 741 (1064)
T ss_pred CCEEEEcCCCCch
Confidence 9999999998864
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=1.6e-23 Score=199.59 Aligned_cols=166 Identities=31% Similarity=0.415 Sum_probs=141.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.-.|+++|.||+|||||+|+++|.+...+++.|.|||+.+.+.... +..++.++||||+.+.. ......+...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk------~~l~~~m~~~ 78 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPK------HALGELMNKA 78 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcc------hHHHHHHHHH
Confidence 4578999999999999999999999999999999999999998885 57899999999998753 2456778888
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
+...+..+|+++||+|+.+++...+..+++.+++.+.|+++++||+|...+... ........-....+..++|+|
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~-----l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV-----LLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH-----HHHHHHHHHhhCCcceEEEee
Confidence 999999999999999999999999999999999988999999999999876542 112222233334566899999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|++.|.+.+...|
T Consensus 154 A~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred ccccCCHHHHHHHHHHhC
Confidence 999999999999998765
No 9
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=8.8e-23 Score=205.61 Aligned_cols=162 Identities=35% Similarity=0.527 Sum_probs=139.8
Q ss_pred ccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 368 ~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
.+.+.+++++|.||+|||||+|.|++.+...|.+.||||||++...+.. +|..+.++||+|+++. .+..|...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet------~d~VE~iG 286 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRET------DDVVERIG 286 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccC------ccHHHHHH
Confidence 3457799999999999999999999999999999999999999999885 8999999999999863 45789999
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
+.+++..+..||++++|+|++.+.+.++...+. ....++|+++|.||+|+....... .++.....+++
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~-----------~~~~~~~~~~i 354 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE-----------SEKLANGDAII 354 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccc-----------hhhccCCCceE
Confidence 999999999999999999999988888888777 566689999999999998754321 11222334799
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+||++|.|++.|.+.|.+.+
T Consensus 355 ~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 355 SISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred EEEecCccCHHHHHHHHHHHH
Confidence 999999999999999998765
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=6.4e-23 Score=182.13 Aligned_cols=155 Identities=28% Similarity=0.435 Sum_probs=119.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.||+|||||+|+|+|.+ ..+++.||+|++...+.+.+ ++..+.++||||+.+... ..+...+.+.+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~------~s~ee~v~~~~ 73 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSS------KSEEERVARDY 73 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSS------SSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCC------CCcHHHHHHHH
Confidence 68999999999999999999987 78999999999998888876 668999999999966432 12222333333
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccc
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~ 532 (549)
-....+|++++|+|+++ .+.+..++.++.+.++|+++|+||+|+.......+. .+.+.+.+ ++|++++||+
T Consensus 74 l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id---~~~Ls~~L----g~pvi~~sa~ 144 (156)
T PF02421_consen 74 LLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEID---AEKLSERL----GVPVIPVSAR 144 (156)
T ss_dssp HHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE----HHHHHHHH----TS-EEEEBTT
T ss_pred HhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEEC---HHHHHHHh----CCCEEEEEeC
Confidence 34589999999999997 467778889999999999999999999765554332 23333443 4799999999
Q ss_pred cCCCHHHHHHHH
Q 008909 533 AGQSVDKYVLYL 544 (549)
Q Consensus 533 ~g~~v~~L~~~l 544 (549)
+|.|+++|++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=204.24 Aligned_cols=161 Identities=33% Similarity=0.462 Sum_probs=138.4
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+.|+++|.||+|||||.|+|++.+...+++.||+|||....... |.+..+.++||+|+.... ....+.....++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~-~~~~~f~lIDTgGl~~~~-----~~~l~~~i~~Qa 77 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAE-WLGREFILIDTGGLDDGD-----EDELQELIREQA 77 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeE-EcCceEEEEECCCCCcCC-----chHHHHHHHHHH
Confidence 57999999999999999999999999999999999999988877 477889999999996521 124566678889
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
..++..||++|||+|+..+++.+|..+.+.++..++|+|+|+||+|-.... ....+ +-.++...++++||
T Consensus 78 ~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e---------~~~~e-fyslG~g~~~~ISA 147 (444)
T COG1160 78 LIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE---------ELAYE-FYSLGFGEPVPISA 147 (444)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh---------hhHHH-HHhcCCCCceEeeh
Confidence 999999999999999999999999999999998889999999999976321 12223 34467778999999
Q ss_pred ccCCCHHHHHHHHHhhh
Q 008909 532 IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~~ 548 (549)
.+|.|+.+|++.+.+.+
T Consensus 148 ~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 148 EHGRGIGDLLDAVLELL 164 (444)
T ss_pred hhccCHHHHHHHHHhhc
Confidence 99999999999998765
No 12
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=193.36 Aligned_cols=166 Identities=33% Similarity=0.498 Sum_probs=140.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.-.|+|+|+||||||||+|+|+|.+.+.+++.+.+|+....+-+..+..++.++||||+.....
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---------------- 69 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---------------- 69 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch----------------
Confidence 5689999999999999999999999999999999999999999999999999999999976322
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH--
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-- 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~-- 320 (549)
.+-..|.+.+...+..+|+++||+|+..++...+..+++.++.. +.|+++++||+|......
T Consensus 70 --------------~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~--~~pvil~iNKID~~~~~~~l 133 (298)
T COG1159 70 --------------ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT--KTPVILVVNKIDKVKPKTVL 133 (298)
T ss_pred --------------HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc--CCCeEEEEEccccCCcHHHH
Confidence 12334567788899999999999999999999888888888873 789999999999876554
Q ss_pred HhHHHHHHcC--C-CceEeeccCCCChhhhHHHHHHHhhhhcc
Q 008909 321 MQVSEFWSLG--F-SPLPISAISGTGTGELLDLVCSELKKVEG 360 (549)
Q Consensus 321 ~~~~~~~~~~--~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~ 360 (549)
.....+.... + .++|+||++|.|++.|++.+..++++...
T Consensus 134 ~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 134 LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 3333333322 2 68999999999999999999999886553
No 13
>COG2262 HflX GTPases [General function prediction only]
Probab=99.89 E-value=9e-23 Score=201.80 Aligned_cols=202 Identities=25% Similarity=0.274 Sum_probs=162.4
Q ss_pred HHHHHhhhHHhhcccccchhhhhhhhccccccccCCCCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccce
Q 008909 123 EYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM 202 (549)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~ 202 (549)
++.-+.++|.++.++...+++++...+.+...+..+.....|.|+++||+|+|||||+|+|++.. ..+.+..+.|.++.
T Consensus 152 E~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpt 230 (411)
T COG2262 152 ETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPT 230 (411)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCc
Confidence 44555678888889999999999888888888888889999999999999999999999999875 66788899999999
Q ss_pred eeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEe
Q 008909 203 YGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVD 281 (549)
Q Consensus 203 ~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD 281 (549)
...+.+. |+++++-||.||.+ ++++.+++.| +.++..+..+|++++|+|
T Consensus 231 tR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AF----------------------------ksTLEE~~~aDlllhVVD 280 (411)
T COG2262 231 TRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAF----------------------------KSTLEEVKEADLLLHVVD 280 (411)
T ss_pred eeEEEeCCCceEEEecCccCcc--cCChHHHHHH----------------------------HHHHHHhhcCCEEEEEee
Confidence 9999887 68999999999987 6777766665 467788899999999999
Q ss_pred CCCCCCcchHHHH-HHHHHc-cCCCeEEEEeccCCCChhhHHhHHHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhh
Q 008909 282 GQAGLTAADEEIA-DWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 282 ~~~~~~~~~~~~~-~~l~~~-~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+++|......... +.|.+. ....|+|+|+||+|+..... .......+. ..+++||++|.|++.|...|...+..
T Consensus 281 aSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 281 ASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 9998544444433 334432 34689999999999876543 111222222 58999999999999999999888764
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=1.3e-21 Score=193.22 Aligned_cols=162 Identities=25% Similarity=0.353 Sum_probs=124.5
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
.|+++|.+|+|||||+|++++.+...+++.++||++.+...... ++.++.+|||||+.+.. ..........+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~------~~l~~~~~~~~~ 74 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKK------HSLNRLMMKEAR 74 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCc------chHHHHHHHHHH
Confidence 58999999999999999999988778899999999987665543 55689999999996531 112233455667
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccc
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~ 532 (549)
.+++.+|++++|+|++++...+ ..++..+...+.|+++|+||+|+..... ....+..........+++++||+
T Consensus 75 ~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 75 SAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDK------LLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred HHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHH------HHHHHHHHHhhcCCCceEEEecC
Confidence 7889999999999999865544 5667778888999999999999964211 12233333333344589999999
Q ss_pred cCCCHHHHHHHHHhhh
Q 008909 533 AGQSVDKYVLYLATSF 548 (549)
Q Consensus 533 ~g~~v~~L~~~l~~~~ 548 (549)
+|.|+++|++++.+.+
T Consensus 148 ~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHL 163 (270)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998764
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=3.9e-22 Score=177.10 Aligned_cols=151 Identities=31% Similarity=0.432 Sum_probs=112.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
.+|+++|.||||||||+|+|+|.+ ..++++||+|.+...+.+.+.+..+.++||||..+......+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e------------- 66 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE------------- 66 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-------------
Confidence 379999999999999999999998 779999999999999999999999999999999775432210
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
++.+..++ ...|++++|+|+++ ...+..+...+.+. +.|+++|+||+|...+...
T Consensus 67 -------------------e~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 67 -------------------ERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGI 123 (156)
T ss_dssp -------------------HHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTE
T ss_pred -------------------HHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCC
Confidence 01222333 56999999999876 23444555556655 8999999999998765322
Q ss_pred h---HHHHHHcCCCceEeeccCCCChhhhHHHH
Q 008909 322 Q---VSEFWSLGFSPLPISAISGTGTGELLDLV 351 (549)
Q Consensus 322 ~---~~~~~~~~~~~v~vSA~~g~gi~~L~~~i 351 (549)
. ..-....+.+++++||+++.|+++|++.|
T Consensus 124 ~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 124 EIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred EECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 1 11122468899999999999999998764
No 16
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=3.1e-20 Score=206.43 Aligned_cols=161 Identities=29% Similarity=0.441 Sum_probs=128.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.++|+++|.+|+|||||+|++++.....+.+.+|+|++....... +++..+.+|||||+.... ..........
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~-~~~~~~~liDT~G~~~~~------~~~~~~~~~~ 347 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE-WAGTDFKLVDTGGWEADV------EGIDSAIASQ 347 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE-ECCEEEEEEeCCCcCCCC------ccHHHHHHHH
Confidence 457999999999999999999998777788999999998876665 467789999999986421 1233444566
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
+..+++.||++|+|+|++++++..+..+...++..++|+|+|+||+|+..... ...+... .+...++++|
T Consensus 348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~---------~~~~~~~-lg~~~~~~iS 417 (712)
T PRK09518 348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY---------DAAEFWK-LGLGEPYPIS 417 (712)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh---------hHHHHHH-cCCCCeEEEE
Confidence 67788999999999999998898898899999999999999999999864211 1112222 3334578999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.||++|+++|.+.+
T Consensus 418 A~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSL 435 (712)
T ss_pred CCCCCCchHHHHHHHHhc
Confidence 999999999999998754
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=1.4e-21 Score=198.64 Aligned_cols=189 Identities=23% Similarity=0.254 Sum_probs=130.1
Q ss_pred hhcccccchhhhhhhhccccccccCCCCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-CCc
Q 008909 133 IIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEH 211 (549)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~ 211 (549)
+++++...+.+.....+.+...+..+.....++|+|+|++|||||||+|+|++.. ..+.+.+++|.+.....+.+ ++.
T Consensus 159 i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~ 237 (351)
T TIGR03156 159 IRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGG 237 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCc
Confidence 3334444444444444443333444444567999999999999999999999987 67788899999999988888 578
Q ss_pred eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH
Q 008909 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (549)
Q Consensus 212 ~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~ 291 (549)
++.+|||||+.+ ..++.+.+. + +.+...+..+|++++|+|++++......
T Consensus 238 ~i~l~DT~G~~~--~l~~~lie~---------------------------f-~~tle~~~~ADlil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 238 EVLLTDTVGFIR--DLPHELVAA---------------------------F-RATLEEVREADLLLHVVDASDPDREEQI 287 (351)
T ss_pred eEEEEecCcccc--cCCHHHHHH---------------------------H-HHHHHHHHhCCEEEEEEECCCCchHHHH
Confidence 999999999854 122222111 1 2345668899999999999887654433
Q ss_pred H-HHHHHHHc-cCCCeEEEEeccCCCChhhHHhHHHHHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 292 E-IADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 292 ~-~~~~l~~~-~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
. +..++... ..++|+++|+||+|+.+..... .......+++++||++|.|+++|++.+...
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~--~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE--RLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCChHhHH--HHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2 23344432 2368999999999997543221 111222467999999999999999888653
No 18
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.6e-21 Score=173.39 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=124.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||+|+.++.+.. +......++..|+....+.+.+ ..+++||||+|+++|..+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti------------ 74 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI------------ 74 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh------------
Confidence 35689999999999999999998764 5566677777888777776532 347999999999998654
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
+..+||+||++|+|||+++.-++.... |+.++.++ +.|.++|+||||+...+.... ++ .+.++...+.
T Consensus 75 --t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~-----~~-a~~fa~~~~~ 146 (205)
T KOG0084|consen 75 --TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST-----EE-AQEFADELGI 146 (205)
T ss_pred --hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCH-----HH-HHHHHHhcCC
Confidence 344899999999999999877666665 77778776 679999999999987665442 12 2344444455
Q ss_pred C-EEEEccccCCCHHHHHHHHHhhh
Q 008909 525 P-IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~-~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+ ++++|||++.||++.|..++..+
T Consensus 147 ~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 147 PIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred cceeecccCCccCHHHHHHHHHHHH
Confidence 6 99999999999999999887654
No 19
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=6.8e-21 Score=193.37 Aligned_cols=163 Identities=26% Similarity=0.401 Sum_probs=128.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.+...+++.++||++.....+.. ++.++.+|||||+.+.. ......+.+.
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~------~~l~~~~~r~ 124 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK------GSLEKAMVRC 124 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc------ccHHHHHHHH
Confidence 4589999999999999999999988777788899999987766664 67789999999996432 1233445566
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC-CCCCEEEE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-DWAPIVYS 529 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~i 529 (549)
++.+++.||++|+|+|+.+++...+..++..+...+.|.++|+||+|+... . ...+.+.+... ....++++
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~-------~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-Y-------LNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-c-------HHHHHHHHHhcCCCcEEEEE
Confidence 677889999999999999888877777888888888899999999998642 1 12233333332 23579999
Q ss_pred ccccCCCHHHHHHHHHhhh
Q 008909 530 TAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 530 SA~~g~~v~~L~~~l~~~~ 548 (549)
||++|.|+++|+++|.+.+
T Consensus 197 SAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKA 215 (339)
T ss_pred eccCccCHHHHHHHHHHhC
Confidence 9999999999999998754
No 20
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.6e-20 Score=172.48 Aligned_cols=173 Identities=51% Similarity=0.786 Sum_probs=134.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+||||++|++++.......+.++++++.....+.. ++..+.+|||||+.+..... ...+.+...+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~---~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVE---EGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchh---ccHHHHHHHH
Confidence 3579999999999999999999987666778888888887666554 66789999999997643211 1233444455
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
....++.+|++++|+|+.++.+.+...++..+...+.|+++|+||+|+..... .....+.+.+.+.+....+.+++++|
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS-KTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH-HHHHHHHHHHHhhcccccCCceEEEe
Confidence 66678999999999999998888887888888778899999999999976531 12223344555555555567899999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|++++++.+.++|
T Consensus 157 a~~~~~i~~~~~~l~~~~ 174 (174)
T cd01895 157 ALTGQGVDKLFDAIDEVY 174 (174)
T ss_pred ccCCCCHHHHHHHHHHhC
Confidence 999999999999998875
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=2.7e-21 Score=194.93 Aligned_cols=163 Identities=33% Similarity=0.440 Sum_probs=133.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.-.+|+|+|.||||||||+|+|++++.++|++.+|+|++.....+.++|.++.++||+|+.+.. +.++.+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~----d~VE~iG----- 286 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD----DVVERIG----- 286 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc----cHHHHHH-----
Confidence 4578999999999999999999999999999999999999999999999999999999996532 2333221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
+ +.+...+..||++++|+|++.+.+..+..+...+. .++|+++|+||+|+..+...
T Consensus 287 ----I-----------------eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~---~~~~~i~v~NK~DL~~~~~~ 342 (454)
T COG0486 287 ----I-----------------ERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP---KKKPIIVVLNKADLVSKIEL 342 (454)
T ss_pred ----H-----------------HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc---cCCCEEEEEechhccccccc
Confidence 1 45678889999999999999987888877777332 37899999999999876443
Q ss_pred hHHHHHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 322 ~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
... ....+.+++.+||++|.|++.|.+.+.+.+...
T Consensus 343 ~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 343 ESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred chh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 222 223455789999999999999999998877643
No 22
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.9e-21 Score=170.04 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=124.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+++++|..++|||+|+++++... +...+.+.+.+|+....+.+.+ ..+++||||+||++|.++.+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslip----------- 89 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP----------- 89 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhh-----------
Confidence 3689999999999999999999764 6777888899999888886543 34789999999999987532
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHhC----CcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQEG----KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~~----~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
.|+|++.++|+|||.++.-+.++ .+|++.+...+ .-+++|+||.||...++....+ ++..+...++
T Consensus 90 ---sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE------g~~kAkel~a 160 (221)
T KOG0094|consen 90 ---SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE------GERKAKELNA 160 (221)
T ss_pred ---hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH------HHHHHHHhCc
Confidence 27899999999999998766444 45888887763 4577899999999876654332 2222333346
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.|+++||+.|.||.+||..|+.++
T Consensus 161 ~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 161 EFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred EEEEecccCCCCHHHHHHHHHHhc
Confidence 899999999999999999998765
No 23
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=2e-20 Score=190.14 Aligned_cols=160 Identities=24% Similarity=0.358 Sum_probs=120.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..++|+++|.+|+|||||+|++++.. +.+.+.+++|+|.....+.+.++..+.+|||||+.+.. .......+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l------~~~lie~f~ 260 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL------PHELVAAFR 260 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC------CHHHHHHHH
Confidence 45799999999999999999999986 66788899999998888877678899999999984310 111122355
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH----HHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR----IAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~----~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
.++..++.||++++|+|++++...++.. ++..+...++|+++|+||+|+...... . .... ...+
T Consensus 261 ~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-------~---~~~~--~~~~ 328 (351)
T TIGR03156 261 ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-------E---RLEE--GYPE 328 (351)
T ss_pred HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-------H---HHHh--CCCC
Confidence 6777899999999999999876655543 233333337899999999999653211 1 1111 2246
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++|+++|.+.+
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998753
No 24
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=2.9e-20 Score=169.43 Aligned_cols=158 Identities=27% Similarity=0.323 Sum_probs=113.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCC--CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.|+++|.+|+|||||+|++++.. .+.....+++|.+.....+....+..+.+|||||+.++. ..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~--------------~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI--------------KN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH--------------HH
Confidence 58999999999999999999743 222233457777765555554336789999999996531 23
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCC-cEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC--CCCCEE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DWAPIV 527 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~-p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~--~~~~~i 527 (549)
+..+++.+|++++|+|++++...+....+..+...+. |+++|+||+|+...... ....+++.+.++.. ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL---ELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH---HHHHHHHHHHHHhcCcCCCcEE
Confidence 4456889999999999988665666665555555555 99999999999753211 12234445555542 356899
Q ss_pred EEccccCCCHHHHHHHHHhh
Q 008909 528 YSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~ 547 (549)
++||++|.|++++++.+.++
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~ 164 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDEL 164 (164)
T ss_pred EEeCCCCcCHHHHHHHHhhC
Confidence 99999999999999998753
No 25
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=2.2e-20 Score=196.38 Aligned_cols=157 Identities=38% Similarity=0.554 Sum_probs=126.8
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
....+|+++|.+|+|||||+|++++.....+.+.+|+|++.....+.. ++..+.+|||||+.++. ...+...+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~------~~ie~~gi 285 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD------DEVEKIGI 285 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc------cHHHHHHH
Confidence 345789999999999999999999987667889999999998877764 67889999999997532 23455556
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
.+++.+++.+|++++|+|++++.+.++..++.. ..++|+++|+||+|+...... . .....++++
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~------~--------~~~~~~~i~ 349 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDL------E--------EENGKPVIR 349 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchh------h--------hccCCceEE
Confidence 777888999999999999998877776666654 457899999999999653221 0 123457999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++|.|+++|+++|.+.+
T Consensus 350 iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 350 ISAKTGEGIDELREAIKELA 369 (449)
T ss_pred EEeeCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 26
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.6e-20 Score=166.46 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=115.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+++++|..++|||||+-++...+ |.....+.+..-+....+...+ ..++.||||+|++++.++..+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapM---------- 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPM---------- 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccc----------
Confidence 4589999999999999999998764 4333345444445554444322 357789999999997664322
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHhCCc---EEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQEGKG---CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~~~p---~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
|||+|+++|+|||+++.-+.+..+ |++.+++...| +.+|+||+||...+.+. .++...+ +...+..
T Consensus 74 ----YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~-----~~ea~~y-Ae~~gll 143 (200)
T KOG0092|consen 74 ----YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVE-----FEEAQAY-AESQGLL 143 (200)
T ss_pred ----eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccccc-----HHHHHHH-HHhcCCE
Confidence 799999999999999866655544 77888887444 55699999998755543 2233333 3345679
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++|||+|.||++||..|++.+
T Consensus 144 ~~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 144 FFETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEEecccccCHHHHHHHHHHhc
Confidence 99999999999999999998753
No 27
>PRK11058 GTPase HflX; Provisional
Probab=99.84 E-value=2.5e-20 Score=193.60 Aligned_cols=196 Identities=19% Similarity=0.191 Sum_probs=131.1
Q ss_pred hhHHhhcccccchhhhhhhhccccccccCCCCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee
Q 008909 129 SRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW 208 (549)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~ 208 (549)
++|.+..++......++...+.+...+..+.....|+|+|+|++|||||||+|+|++.+.. +.+.+++|.+.....+.+
T Consensus 163 d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l 241 (426)
T PRK11058 163 DRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDV 241 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEe
Confidence 3344444444444444443333332222233345789999999999999999999998744 788899999998888877
Q ss_pred CCc-eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC
Q 008909 209 GEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (549)
Q Consensus 209 ~~~-~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~ 287 (549)
.+. .+.+|||||+.+. .++.+.+. + ..+...+..+|++|+|+|++++..
T Consensus 242 ~~~~~~~l~DTaG~~r~--lp~~lve~---------------------------f-~~tl~~~~~ADlIL~VvDaS~~~~ 291 (426)
T PRK11058 242 ADVGETVLADTVGFIRH--LPHDLVAA---------------------------F-KATLQETRQATLLLHVVDAADVRV 291 (426)
T ss_pred CCCCeEEEEecCccccc--CCHHHHHH---------------------------H-HHHHHHhhcCCEEEEEEeCCCccH
Confidence 664 8999999998542 22222111 1 234566788999999999988654
Q ss_pred cchHH-HHHHHHHc-cCCCeEEEEeccCCCChhhHHhHHHHHHcCCC-ceEeeccCCCChhhhHHHHHHHhh
Q 008909 288 AADEE-IADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGFS-PLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 288 ~~~~~-~~~~l~~~-~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~~-~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
..... +..++... ..+.|+++|+||+|+....... ......+++ ++++||++|.|+++|++.+...+.
T Consensus 292 ~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~-~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR-IDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH-HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 44432 22334332 1368999999999987532211 111223444 488999999999999999988774
No 28
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=4.6e-20 Score=182.26 Aligned_cols=161 Identities=29% Similarity=0.411 Sum_probs=121.6
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|++|||||||+|+|++.+...+++.+++|+....+....++.++.+|||||+.....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~------------------ 63 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH------------------ 63 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc------------------
Confidence 68999999999999999999998888899999999887776666777899999999865311
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hH
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QV 323 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~ 323 (549)
.+...+.+.+..++..+|++++|+|++.+.... ..+...+... +.|+++|+||+|+...... ..
T Consensus 64 ------------~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~~~~~ 128 (270)
T TIGR00436 64 ------------SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNL--KRPVVLTRNKLDNKFKDKLLPL 128 (270)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhc--CCCEEEEEECeeCCCHHHHHHH
Confidence 011223345667788999999999998765443 4455556554 7899999999999743321 11
Q ss_pred -HHHHH-cCC-CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 324 -SEFWS-LGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 324 -~~~~~-~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
..+.. .++ +++++||++|.|++++++.+.+.++..
T Consensus 129 ~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 129 IDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 11211 233 689999999999999999998887653
No 29
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1.1e-19 Score=164.14 Aligned_cols=157 Identities=32% Similarity=0.446 Sum_probs=120.7
Q ss_pred EEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHH
Q 008909 375 AIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454 (549)
Q Consensus 375 ~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~ 454 (549)
+++|.+|+|||||+|++++.........+++|++........ ++..+.+|||||+.++.. .............
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~------~~~~~~~~~~~~~ 73 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE------GISKEIREQAELA 73 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh------HHHHHHHHHHHHH
Confidence 368999999999999999876566777888998877666653 667899999999966421 1112223344567
Q ss_pred HhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccC
Q 008909 455 IRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAG 534 (549)
Q Consensus 455 ~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g 534 (549)
++.+|++++|+|+.++.+..+..+++.++..+.|+++|+||+|+...... ...+...+..+++++||++|
T Consensus 74 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 74 IEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE----------AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred HHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH----------HHHHHhcCCCCeEEEecccC
Confidence 89999999999999888777777888888889999999999999764221 12233344447899999999
Q ss_pred CCHHHHHHHHHhhh
Q 008909 535 QSVDKYVLYLATSF 548 (549)
Q Consensus 535 ~~v~~L~~~l~~~~ 548 (549)
.|++++++++.+.+
T Consensus 144 ~gv~~l~~~l~~~~ 157 (157)
T cd01894 144 RGIGDLLDAILELL 157 (157)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 30
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=9.1e-20 Score=183.76 Aligned_cols=166 Identities=22% Similarity=0.315 Sum_probs=124.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.-...|+++|.+|+|||||+|++.+.+ ..++++|+||++.....+.+.++.++.+|||||+.+..+ ......
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~-------~~~gLg 227 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS-------EGAGLG 227 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC-------ccccHH
Confidence 335689999999999999999999865 568899999999988887765677899999999965221 112234
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
...+++++.++++++|||+++..+.++.. |..++..+ ++|++||+||+|+....... .......+...
T Consensus 228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~-----~~~~~~~~~~~- 301 (335)
T PRK12299 228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER-----EKRAALELAAL- 301 (335)
T ss_pred HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH-----HHHHHHHHHhc-
Confidence 56778899999999999998754455554 44556553 68999999999987543211 11122222322
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+++++||+++.||++|+++|.+.+
T Consensus 302 ~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 302 GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999998764
No 31
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=1.2e-19 Score=181.64 Aligned_cols=166 Identities=33% Similarity=0.456 Sum_probs=129.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
...|+++|.+|+|||||+|+++|.+...+++.++||++........ ++.++.++||||+.+... .........
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~------~l~~~~~~~ 77 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKR------ALNRAMNKA 77 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchh------HHHHHHHHH
Confidence 4579999999999999999999998878889999999887766553 557899999999965321 123334555
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
+...+..+|++++|+|++++++..+..++..+...+.|+++|+||+|+...... ....+..........+++++|
T Consensus 78 ~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~-----l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 78 AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEE-----LLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHH-----HHHHHHHHHhhCCCCeEEEec
Confidence 667789999999999999878887878888888778999999999999743211 122222232334457899999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|+++|++++.+.+
T Consensus 153 A~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998754
No 32
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.7e-20 Score=166.78 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=124.9
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
....+++++|.+++|||+++.++... .+.........+|.....+.+.. ..++++|||+|+++|..+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti----------- 77 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI----------- 77 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhc-cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH-----------
Confidence 34578999999999999999999865 46667777778888777776533 347899999999887543
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
+-.|+++|+++++|||+++..+.+.. .|++.+.++ ..|.|+|+||+|+...+.+. .+-.+.++...+
T Consensus 78 ---~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~------~e~ge~lA~e~G 148 (207)
T KOG0078|consen 78 ---TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVS------KERGEALAREYG 148 (207)
T ss_pred ---HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccccc------HHHHHHHHHHhC
Confidence 34578999999999999986655554 377888876 68999999999998755443 223455666668
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++++|||+|.||++.|-.|++.
T Consensus 149 ~~F~EtSAk~~~NI~eaF~~La~~ 172 (207)
T KOG0078|consen 149 IKFFETSAKTNFNIEEAFLSLARD 172 (207)
T ss_pred CeEEEccccCCCCHHHHHHHHHHH
Confidence 899999999999999999988764
No 33
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=1.1e-19 Score=166.85 Aligned_cols=162 Identities=24% Similarity=0.296 Sum_probs=114.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||+|++.+.. ..+...+++|++.....+...+..++.+|||||+.+... ........++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS-------EGKGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccc-------ccCCchHHHH
Confidence 58999999999999999999865 356677788877666555543334899999999854211 0111234455
Q ss_pred HHHhcCCcEEEEEEcccc-CCHhHH-HHHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 453 RAIRRSDVVALVIEAMAC-ITEQDC-RIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~-~~~~~~-~~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
+.++.+|++++|+|++++ -..+.. .+.+.+... ++|+++|+||+|+.+.... ...+...+......+
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~------~~~~~~~~~~~~~~~ 147 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL------FELLKELLKELWGKP 147 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh------HHHHHHHHhhCCCCC
Confidence 667889999999999986 333333 344555443 6899999999998654322 122333344333468
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|+++.+++
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998764
No 34
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.83 E-value=1.4e-19 Score=163.97 Aligned_cols=153 Identities=25% Similarity=0.390 Sum_probs=116.7
Q ss_pred HHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hHHHHHHcCCC--ceEeeccCCC
Q 008909 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFWSLGFS--PLPISAISGT 342 (549)
Q Consensus 266 ~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~~~~~~--~v~vSA~~g~ 342 (549)
++..+..+|++++|+|++.++...+..+.+.+.....++|+++|+||+|+.++... .....+...++ ++++||+++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 34678899999999999998777777787777654335899999999999765422 22333333332 5789999999
Q ss_pred ChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeE
Q 008909 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKF 422 (549)
Q Consensus 343 gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i 422 (549)
|+.+|++.+........ ......++++|.+|+||||++|++++.....+++.+|+|++...... +..+
T Consensus 82 ~~~~L~~~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~ 149 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL----MKRI 149 (157)
T ss_pred cHHHHHHHHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc----CCCE
Confidence 99999999877654211 11235788999999999999999999988899999999998654332 3458
Q ss_pred EEEeCCCc
Q 008909 423 RLIDTAGI 430 (549)
Q Consensus 423 ~l~DTpG~ 430 (549)
.++||||+
T Consensus 150 ~liDtPGi 157 (157)
T cd01858 150 YLIDCPGV 157 (157)
T ss_pred EEEECcCC
Confidence 99999996
No 35
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=1.6e-19 Score=165.53 Aligned_cols=161 Identities=23% Similarity=0.324 Sum_probs=111.2
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
++|+++|.+|+||||++|++++.. +.+.+.+++|.+........ ++.++.+|||||+.+..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~------~~~~~~~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEE------RNTIEMQA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccC------CchHHHHH
Confidence 378999999999999999999875 34556677777765555443 56789999999995432110 00000112
Q ss_pred HHHH-hcCCcEEEEEEccccCC---HhHHHHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 452 FRAI-RRSDVVALVIEAMACIT---EQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 452 ~~~~-~~ad~~llVvD~~~~~~---~~~~~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+ ..+|++++|+|+++... .....++..+... +.|+++|+||+|+....... . ..+ +......+
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~------~-~~~-~~~~~~~~ 144 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS------E-IEE-EEELEGEE 144 (168)
T ss_pred HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH------H-HHH-hhhhccCc
Confidence 2222 34689999999987533 3334567777665 79999999999997543221 1 122 22334568
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++++++.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHHh
Confidence 99999999999999999998865
No 36
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.83 E-value=9.7e-20 Score=171.39 Aligned_cols=156 Identities=20% Similarity=0.186 Sum_probs=110.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
.|+++|..|+||||++++++... +.....++.+.+.....+...+ ...+.+|||+|+.++..+ .
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l--------------~ 66 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--------------T 66 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH--------------H
Confidence 58999999999999999999764 4334445555565544444322 357899999999765321 2
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
..+++++|++|+|+|++++.+.+... |+..+... +.|++||+||+|+...+.+. .....+......+..++
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~-----~~~~~~~a~~~~~~~~~ 141 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS-----RQQGEKFAQQITGMRFC 141 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-----HHHHHHHHHhcCCCEEE
Confidence 23689999999999999977666654 44555543 68999999999996544332 12222333333346899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.||+++|+++++.+
T Consensus 142 etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 142 EASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998643
No 37
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=1e-19 Score=184.77 Aligned_cols=166 Identities=27% Similarity=0.393 Sum_probs=127.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
...+|+++|.+|||||||+|+|++.+...+++.+++|++...+.+.+++.++.+|||||+......
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-------------- 116 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-------------- 116 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--------------
Confidence 356899999999999999999999987778889999998888888888999999999998542111
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
+...+.+.+...+..+|++++|+|+..++...+..++..+... +.|.++|+||+|+......
T Consensus 117 ----------------l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~~~ 178 (339)
T PRK15494 117 ----------------LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL--NIVPIFLLNKIDIESKYLN 178 (339)
T ss_pred ----------------HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccccHH
Confidence 1112334555668899999999998877766665666666554 5677899999998654333
Q ss_pred hHHHHHHc-C--CCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 322 QVSEFWSL-G--FSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 322 ~~~~~~~~-~--~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
....+... . ..++++||++|.|++++++++...++...
T Consensus 179 ~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 179 DIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 33333322 2 35899999999999999999998876543
No 38
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.83 E-value=5.9e-20 Score=171.71 Aligned_cols=160 Identities=26% Similarity=0.412 Sum_probs=121.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCee-----------------ecCCCCceeeeeEEEEe-ccCCCeEEEEeCCCccc
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----------------VSPISGTTRDAIDTEFT-GPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~-----------------~~~~~gtt~~~~~~~~~-~~~~~~i~l~DTpG~~~ 432 (549)
..+|+++|+.++|||||+++|++..... .....+.|.+.....+. ...+..+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4689999999999999999998643211 01123666666555554 24678999999999965
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
| ...+.+.++.+|++|+|||+.++...+..+.+..+...++|+|||+||+|+... ...+..+
T Consensus 83 f--------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~----~~~~~~~ 144 (188)
T PF00009_consen 83 F--------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK----ELEEIIE 144 (188)
T ss_dssp H--------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH----HHHHHHH
T ss_pred e--------------eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhh----hHHHHHH
Confidence 4 345666789999999999999999999999999999999999999999999822 1223334
Q ss_pred HHH-HHHhcCC-----CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 513 DVR-EKLRALD-----WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 513 ~~~-~~l~~~~-----~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++. ..++... ..|++++||++|.|+++|++.|.+.+
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 444 2333332 35799999999999999999998764
No 39
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.5e-19 Score=190.56 Aligned_cols=161 Identities=27% Similarity=0.446 Sum_probs=125.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.++|+++|.+|+|||||+|++++.....+.+.+|+|++....... +++..+.+|||||+.... ..........
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~-~~~~~~~l~DT~G~~~~~------~~~~~~~~~~ 110 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAE-WNGRRFTVVDTGGWEPDA------KGLQASVAEQ 110 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEE-ECCcEEEEEeCCCcCCcc------hhHHHHHHHH
Confidence 368999999999999999999998766788999999998877665 367889999999985311 1122223344
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
+..+++.||++|+|||++++.+..+..+...+...++|+++|+||+|+..... . ..+.. ..+...++++|
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~-~--------~~~~~-~~g~~~~~~iS 180 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA-D--------AAALW-SLGLGEPHPVS 180 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch-h--------hHHHH-hcCCCCeEEEE
Confidence 56678999999999999998888888888889888999999999999864211 0 11111 22333568999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|+++|+++|.+.+
T Consensus 181 A~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred cCCCCCcHHHHHHHHhhc
Confidence 999999999999998654
No 40
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=4e-19 Score=185.73 Aligned_cols=159 Identities=35% Similarity=0.495 Sum_probs=125.1
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
....+|+++|.+|+|||||+|++++.....+.+.+|||++.....+.+ ++..+.+|||||+.++. ...+...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~------~~ie~~gi 273 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA------DFVERLGI 273 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch------hHHHHHHH
Confidence 446789999999999999999999987677889999999988877765 67889999999997642 23455556
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
.++..+++.+|++++|+|++++.+.++. ++..+...++|+++|+||+|+... .. .. +.+..+.++++
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~-------~~----~~~~~~~~~~~ 340 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL-------EF----FVSSKVLNSSN 340 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch-------hh----hhhhcCCceEE
Confidence 6777889999999999999988776666 677776678999999999998643 11 11 11122357899
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++ .||+++|+.+.+.+
T Consensus 341 vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred EEEec-CCHHHHHHHHHHHH
Confidence 99998 58999888877643
No 41
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=3.1e-19 Score=161.29 Aligned_cols=155 Identities=56% Similarity=0.895 Sum_probs=122.0
Q ss_pred EEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCC
Q 008909 167 AIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (549)
Q Consensus 167 ~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi 246 (549)
+++|++|+|||||+|+|++.........+++|.........+.+..+.+|||||+.....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------------------- 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-------------------- 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--------------------
Confidence 479999999999999999987667778889998888888888889999999999975322
Q ss_pred chhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHHHH
Q 008909 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326 (549)
Q Consensus 247 ~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~~~ 326 (549)
.+...+.+.+...+..+|++++|+|++.+....+..+..++... +.|+++|+||+|+...... ....
T Consensus 61 ----------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~-~~~~ 127 (157)
T cd01894 61 ----------GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEEDE-AAEF 127 (157)
T ss_pred ----------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHHH-HHHH
Confidence 01122333455667889999999999887777777777777665 7999999999999875443 2233
Q ss_pred HHcCC-CceEeeccCCCChhhhHHHHHHH
Q 008909 327 WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 327 ~~~~~-~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
...+. +++++||++|.|++++++.+.+.
T Consensus 128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 128 YSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 34555 78999999999999999988754
No 42
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.82 E-value=2.8e-19 Score=168.17 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=109.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++... .....|+++.+.....+.. ++ ..+.+|||||+.++.. .........
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~------~~~~e~~~~ 73 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPG------TAGQEWMDP 73 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCc------cchhHHHHH
Confidence 689999999999999999998653 3334555544443333332 44 4678999999876421 111111223
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++|+|+|++++.+.+... ++..+.+ .++|+++|+||+|+...+... .+.+....++..+
T Consensus 74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-----~~~~~~~~~~~~~ 148 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-----RHVLSVLVRKSWK 148 (198)
T ss_pred HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-----HHHHHHHHHHhcC
Confidence 445689999999999999876555444 4444443 358999999999996543221 1122333333345
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++++||++|.||++||+.+.+.
T Consensus 149 ~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 149 CGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Confidence 789999999999999999998764
No 43
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=5e-19 Score=183.93 Aligned_cols=162 Identities=17% Similarity=0.249 Sum_probs=118.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+.|+++|.+|+|||||+|++++.+.. +.+.+|+|+|.....+..+++..+.+|||||+.+.. .......+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l------p~~lve~f~ 268 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL------PHDLVAAFK 268 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC------CHHHHHHHH
Confidence 3468999999999999999999987644 778899999998877776555589999999995421 111122355
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH----HHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR----IAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~----~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
.++..++.||++|+|+|++++...+... ++..+...++|+++|+||+|+....... +... ..+...
T Consensus 269 ~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--------~~~~--~~~~~~ 338 (426)
T PRK11058 269 ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--------IDRD--EENKPI 338 (426)
T ss_pred HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--------HHHH--hcCCCc
Confidence 6777889999999999999876656553 3444444479999999999996431110 0001 112223
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++|+++|.+.+
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 44
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.82 E-value=7.1e-19 Score=158.81 Aligned_cols=155 Identities=42% Similarity=0.584 Sum_probs=121.5
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
.+++++|.+|+||||++|++++.....+.+.+++|.+.....+.. ++.++.+|||||+.+... ..+.......
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~------~~~~~~~~~~ 74 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETED------EIEKIGIERA 74 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcc------hHHHHHHHHH
Confidence 478999999999999999999887666778889998876666653 577899999999976421 2233345566
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
...+..+|++++|+|++++.+..+...+.. ..++|+++|+||+|+...... .......+++++||
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa 139 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISA 139 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEEC
Confidence 677899999999999998777777666554 567999999999999764321 12233568999999
Q ss_pred ccCCCHHHHHHHHHhhh
Q 008909 532 IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~~ 548 (549)
+++.|+++|+++|...+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998765
No 45
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=6.2e-19 Score=164.83 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=122.3
Q ss_pred ceEEEeCCCCCChhHHHHHHhcC------CCe---------eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhh
Q 008909 372 PAIAIVGRPNVGKSSILNALVGE------DRT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~------~~~---------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~ 436 (549)
.+++++|+.++|||||+++|++. ... ......|+|++.....+. +++.++.++||||+.+|
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~~--- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHADY--- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHHHH---
Confidence 47999999999999999999863 100 011245888888776665 46789999999999553
Q ss_pred ccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHHHHH
Q 008909 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVR 515 (549)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 515 (549)
...+...+..+|++++|+|+..+...++..++..+...++| +|+|+||+|+... ....+.+.+++.
T Consensus 79 -----------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~--~~~~~~~~~~i~ 145 (195)
T cd01884 79 -----------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDD--EELLELVEMEVR 145 (195)
T ss_pred -----------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCc--HHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999987 7788999999742 223334556777
Q ss_pred HHHhcCCC----CCEEEEccccCCCH----------HHHHHHHHh
Q 008909 516 EKLRALDW----APIVYSTAIAGQSV----------DKYVLYLAT 546 (549)
Q Consensus 516 ~~l~~~~~----~~~i~iSA~~g~~v----------~~L~~~l~~ 546 (549)
+.+++.++ ++++|+||++|.|+ ..|++.|..
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~ 190 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDS 190 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHh
Confidence 77776643 78999999999874 567776654
No 46
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=5.3e-19 Score=186.97 Aligned_cols=159 Identities=30% Similarity=0.434 Sum_probs=129.3
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||+|++++.....+.+.+|+|++....... +++..+.+|||||+.... ..........+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~-~~~~~~~liDTpG~~~~~------~~~~~~~~~~~~ 73 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAE-WGGREFILIDTGGIEEDD------DGLDKQIREQAE 73 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEE-ECCeEEEEEECCCCCCcc------hhHHHHHHHHHH
Confidence 3789999999999999999998777788999999998877766 477889999999985321 122333455667
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccc
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~ 532 (549)
.+++.+|++|+|+|+..+++..+..+..++++.++|+++|+||+|+...... . ..+..++..+++++||+
T Consensus 74 ~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~------~----~~~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 74 IAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV------A----AEFYSLGFGEPIPISAE 143 (429)
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc------H----HHHHhcCCCCeEEEeCC
Confidence 7889999999999999999999999999999999999999999998754321 1 11334555689999999
Q ss_pred cCCCHHHHHHHHHhhh
Q 008909 533 AGQSVDKYVLYLATSF 548 (549)
Q Consensus 533 ~g~~v~~L~~~l~~~~ 548 (549)
+|.|+++|++.+.+.+
T Consensus 144 ~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 144 HGRGIGDLLDAILELL 159 (429)
T ss_pred cCCChHHHHHHHHHhc
Confidence 9999999999998764
No 47
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=6.3e-19 Score=163.34 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=109.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeee--------------cCCCCceeeeeEEEEec----cCCCeEEEEeCCCccchh
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIV--------------SPISGTTRDAIDTEFTG----PEGQKFRLIDTAGIRKRA 434 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~--------------~~~~gtt~~~~~~~~~~----~~~~~i~l~DTpG~~~~~ 434 (549)
+|+++|.+++|||||++++++...... ....|++.......+.+ ..+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987432110 11224555443333322 234578899999997642
Q ss_pred hhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHH
Q 008909 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (549)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~ 514 (549)
. .+..+++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+...... ...+++
T Consensus 82 ~--------------~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~----~~~~~~ 143 (179)
T cd01890 82 Y--------------EVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPE----RVKQQI 143 (179)
T ss_pred H--------------HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHH----HHHHHH
Confidence 2 2345688999999999999887777777776666778999999999998643211 112333
Q ss_pred HHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 515 REKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 515 ~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+.+. .....++++||++|.|+++|+++|.+.+
T Consensus 144 ~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 144 EDVLG-LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHhC-CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 33332 2223589999999999999999998754
No 48
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=4.5e-19 Score=182.20 Aligned_cols=164 Identities=23% Similarity=0.293 Sum_probs=121.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
...|+++|.||+|||||+|+|++.+ ..++++|+||+......+...++..+.++||||+.+..+ .......+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~-------~~~~Lg~~ 230 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGAS-------EGAGLGIR 230 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccccc-------chhhHHHH
Confidence 4579999999999999999999876 588999999999999888765566799999999965321 11122345
Q ss_pred HHHHHhcCCcEEEEEEccc---cCC-HhHHHHHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC
Q 008909 451 AFRAIRRSDVVALVIEAMA---CIT-EQDCRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~---~~~-~~~~~~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~ 521 (549)
+++++..+|++++|+|++. .-. .....+++++... ++|+++|+||+|+...... .+.+.+..+..
T Consensus 231 ~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el------~~~l~~l~~~~ 304 (390)
T PRK12298 231 FLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA------EERAKAIVEAL 304 (390)
T ss_pred HHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH------HHHHHHHHHHh
Confidence 6678999999999999872 212 3334466666654 5899999999998653221 22222222323
Q ss_pred CC-CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DW-APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~-~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+ .+++++||+++.|+++|++.|.+.+
T Consensus 305 ~~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 305 GWEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 33 3799999999999999999998765
No 49
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.81 E-value=1.3e-19 Score=158.72 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=121.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|.++|.+|+|||+|+|++...+ +.......+..+.....+...+ -..++||||+|+++|.++.
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg----------- 75 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG----------- 75 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc-----------
Confidence 34689999999999999999999765 4444445555566555554322 2478999999999997643
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHH-HHHH-------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAE-RIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~-~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~ 520 (549)
...||+||.+++|+|+..+-+.+.+.-|+ +... ...|+||++||+|+.......+. .+..++-++.
T Consensus 76 ---~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS---~~~Aq~WC~s 149 (210)
T KOG0394|consen 76 ---VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS---EKKAQTWCKS 149 (210)
T ss_pred ---cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee---HHHHHHHHHh
Confidence 23689999999999999877777776443 3332 25899999999999764322221 4556778888
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+..|+|++|||...||++.|+.+++.
T Consensus 150 ~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 150 KGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred cCCceeEEecccccccHHHHHHHHHHH
Confidence 899999999999999999999988763
No 50
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=5.8e-19 Score=177.84 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=120.8
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.....|+++|.+|+|||||+|++.+.. ..++++|+||+......+.+.++.++.+|||||+.+... ......
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~-------~~~gLg 226 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGAS-------EGAGLG 226 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCc-------ccccHH
Confidence 335689999999999999999999864 567888999999888777764558999999999965321 111234
Q ss_pred HHHHHHHhcCCcEEEEEEcccc---CCHhHHH-HHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh
Q 008909 449 NRAFRAIRRSDVVALVIEAMAC---ITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~---~~~~~~~-~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~ 519 (549)
...++++..+|++|+|+|+++. ...++.. +.+++..+ ++|++||+||+|+..... .+ .+.+.+.
T Consensus 227 ~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~---~~----~~~~~l~ 299 (329)
T TIGR02729 227 HRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE---LA----ELLKELK 299 (329)
T ss_pred HHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH---HH----HHHHHHH
Confidence 5567788999999999999864 2333333 44555443 689999999999975421 11 1222222
Q ss_pred cCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 520 ALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 520 ~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
...+.+++++||+++.|+++|+++|.+.+
T Consensus 300 ~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 300 KALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 22235899999999999999999998876
No 51
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.81 E-value=4.7e-19 Score=167.99 Aligned_cols=163 Identities=25% Similarity=0.289 Sum_probs=112.7
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc-eEEEEEcccccccCCCCcchhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
....++|+|+|++|||||||+|+|++.. ..+...++.|.......+.+.+. .+.+|||||+.+... ....
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~------ 108 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLV------ 108 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHH------
Confidence 3457899999999999999999999875 34455566777777777777665 899999999854211 1000
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESP 316 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~ 316 (549)
..+ ......+..+|++++|+|++.+...... .+.+++... ..+.|+++|+||+|+.
T Consensus 109 ---------------------~~~-~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 109 ---------------------EAF-RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred ---------------------HHH-HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 001 1122346789999999999876554433 233444432 2368999999999997
Q ss_pred hhhHHhHHHHHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 317 RKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 317 ~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
+..... ........+++++||++|.|+.++++.+...
T Consensus 167 ~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 167 DDEELE-ERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ChHHHH-HHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 654332 1222334578999999999999999888653
No 52
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=1.6e-18 Score=158.64 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=113.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc--CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.|+++|.+|+||||++|++++.. +.....+++|.+......... .+..+.+|||||+..+.. .
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------------~ 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN--------------M 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH--------------H
Confidence 58999999999999999999765 333445566766544444432 367899999999854321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh-----cCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-----ALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~-----~~~~~~ 525 (549)
....++.+|++++|+|++++...+....+..+...++|+++|+||+|+....... +...+..... .....+
T Consensus 67 ~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 67 RARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPER----VKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHH----HHHHHHHhhccccccccCcCc
Confidence 2235689999999999998777777777888888899999999999987432211 1222222111 112358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++|+++|.++.
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 143 IVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EEEeecccCCCHHHHHHHHHHhh
Confidence 99999999999999999998753
No 53
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=156.36 Aligned_cols=172 Identities=26% Similarity=0.307 Sum_probs=125.8
Q ss_pred ccCCCCCCCCeEEEEcCCCCchhhHHHhhhCCC-ceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhh
Q 008909 155 IGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIME 233 (549)
Q Consensus 155 ~~~~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~ 233 (549)
....+....+-|+++|++|||||||+|+|++++ .+.++.+||.|+..+...+. + .+.++|.||+.--.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAk-------- 84 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAK-------- 84 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCccccc--------
Confidence 344566678999999999999999999999965 58899999999999875542 2 38899999985311
Q ss_pred hhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccC
Q 008909 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKC 313 (549)
Q Consensus 234 ~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~ 313 (549)
.|.+..+++ ...+.+.+... .+...+++++|+++++...|.++++++... +.|+++++||+
T Consensus 85 ------------v~k~~~e~w----~~~i~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~vv~tK~ 145 (200)
T COG0218 85 ------------VPKEVKEKW----KKLIEEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIVVLTKA 145 (200)
T ss_pred ------------CCHHHHHHH----HHHHHHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEcc
Confidence 122222222 22222222222 236789999999999999999999999987 99999999999
Q ss_pred CCChhhHHh-----HHHHHHcCC--C--ceEeeccCCCChhhhHHHHHHHhh
Q 008909 314 ESPRKGIMQ-----VSEFWSLGF--S--PLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 314 D~~~~~~~~-----~~~~~~~~~--~--~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
|........ ......... . ++.+|+.++.|++++...|.+.+.
T Consensus 146 DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 146 DKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 998754322 111222222 2 788999999999999999887764
No 54
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=2e-18 Score=163.72 Aligned_cols=162 Identities=23% Similarity=0.373 Sum_probs=113.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...++|+++|.+|+|||||+|++++.. +.+...+++|.+.....+.+.+...+.+|||||+.+... .......
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~ 111 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP------HQLVEAF 111 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCC------HHHHHHH
Confidence 345799999999999999999999875 334455666766665555544444899999999854210 1111123
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
......+..+|++++|+|++++....+.. +...+.. .++|+++|+||+|+...... . ..+. ....
T Consensus 112 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~------~----~~~~-~~~~ 180 (204)
T cd01878 112 RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL------E----ERLE-AGRP 180 (204)
T ss_pred HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH------H----HHhh-cCCC
Confidence 33445678999999999999876555443 3333333 36899999999999754221 1 2222 3456
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|+++++++|.+.+
T Consensus 181 ~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 181 DAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ceEEEEcCCCCCHHHHHHHHHhhC
Confidence 899999999999999999998754
No 55
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.1e-18 Score=175.83 Aligned_cols=166 Identities=27% Similarity=0.307 Sum_probs=123.0
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-CCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
.-.+.|+|+|.||||||||+|+|++.+ ..+++++++|..+..+.+.+ ++..+.+|||||+........
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~---------- 224 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGA---------- 224 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccc----------
Confidence 346889999999999999999999875 56889999999999999888 567899999999865322111
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc---cCCCeEEEEeccCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN---YMDKFIILAVNKCES 315 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~---~~~~p~ivv~NK~D~ 315 (549)
-+.+.+++++..++++|+|+|++...+..+.. +...+... +.++|+++|+||+|+
T Consensus 225 ---------------------gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 225 ---------------------GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred ---------------------cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence 13356678889999999999988643333322 33333332 236899999999998
Q ss_pred ChhhHHh--HHH-H-HHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 316 PRKGIMQ--VSE-F-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 316 ~~~~~~~--~~~-~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.+..... ... + ...+.+++++||+++.|++++++.+.+.+.+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 284 LDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred CCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 7543211 111 1 23456899999999999999999998877643
No 56
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.80 E-value=8.1e-19 Score=161.69 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=110.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|.+++|||+|+.+++... +.....|... +.....+... ...++.+|||+|+.++..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~Ti~-~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~-------------- 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVF-DNFSANVSVDGNTVNLGLWDTAGQEDYNRL-------------- 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCCcce-eeeEEEEEECCEEEEEEEEECCCCcccccc--------------
Confidence 378999999999999999999764 4333444332 3333333321 1347889999999876432
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCc--------hhhhHHHHHHHHHHH
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKN--------QQTATYYEQDVREKL 518 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~--------~~~~~~~~~~~~~~l 518 (549)
...+++++|++|+|+|++++.+.+.. .|+..+... +.|++||+||+|+.+.+. ..+. .++..+..
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~---~~~~~~~a 142 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPIT---TAQGEELR 142 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCC---HHHHHHHH
Confidence 11267999999999999998777775 477777643 689999999999965321 0111 22233333
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
...+..++++|||++|.||+++|+.+++.+
T Consensus 143 ~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 333333699999999999999999998753
No 57
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.80 E-value=1.6e-18 Score=161.65 Aligned_cols=156 Identities=16% Similarity=0.118 Sum_probs=111.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|..++|||||+.++.... +.....+..+.+.....+...+ ...+.+|||||+.++.. +
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~------------l- 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT------------I- 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH------------H-
Confidence 4689999999999999999998754 3323333444554333333221 25788999999966432 1
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.+|++|+|+|++++.+.+... |+.++... +.|+|||+||+|+....... .++.....+.. +.++
T Consensus 72 -~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~-----~~~~~~~a~~~-~~~~ 144 (189)
T cd04121 72 -FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA-----TEQAQAYAERN-GMTF 144 (189)
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC-----HHHHHHHHHHc-CCEE
Confidence 123579999999999999877666655 66667653 68999999999996544332 22334444444 4689
Q ss_pred EEEccccCCCHHHHHHHHHhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++||++|.||+++|++|++.
T Consensus 145 ~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 145 FEVSPLCNFNITESFTELARI 165 (189)
T ss_pred EEecCCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 58
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=8.1e-19 Score=158.86 Aligned_cols=156 Identities=22% Similarity=0.339 Sum_probs=112.0
Q ss_pred EeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHH
Q 008909 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (549)
Q Consensus 376 ~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~ 455 (549)
++|.+|+|||||+|++++.. +.+.+.+|+|++.....+.. ++..+.+|||||+.++... ..+.......+..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~- 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPY-----SEDEKVARDFLLG- 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCC-----ChhHHHHHHHhcC-
Confidence 47999999999999999875 56777889999887666664 5678999999999765321 0111111112211
Q ss_pred hcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCC
Q 008909 456 RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQ 535 (549)
Q Consensus 456 ~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~ 535 (549)
..+|++++|+|+.+. .....++..+...++|+++|+||+|+........ . .+ .+....+.+++++||++|.
T Consensus 73 ~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~--~-~~----~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 73 EKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKI--D-LD----KLSELLGVPVVPTSARKGE 143 (158)
T ss_pred CCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchh--h-HH----HHHHhhCCCeEEEEccCCC
Confidence 599999999999873 3344566677778999999999999975432211 1 11 2222234689999999999
Q ss_pred CHHHHHHHHHhhh
Q 008909 536 SVDKYVLYLATSF 548 (549)
Q Consensus 536 ~v~~L~~~l~~~~ 548 (549)
|++++++++.++.
T Consensus 144 ~~~~l~~~l~~~~ 156 (158)
T cd01879 144 GIDELKDAIAELA 156 (158)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 59
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=1.6e-18 Score=163.98 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=109.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc--CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++.. +.....+....+.....+... ....+.+|||||+.++.. .
T Consensus 2 KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~--------------~ 66 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG--------------M 66 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh--------------h
Confidence 68999999999999999999864 333344544445444344332 234688999999965432 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH-------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
...+++++|++++|+|++++.+.+... |+..+.. .++|++||+||+|+....... .+++.+.+...+
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-----~~~~~~~~~~~~ 141 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD-----GEQMDQFCKENG 141 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC-----HHHHHHHHHHcC
Confidence 233679999999999999866555544 4444432 368999999999997432222 233445555555
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+++++||++|.||+++|++|.+.+
T Consensus 142 ~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 142 FIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998753
No 60
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=1.4e-18 Score=162.95 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=113.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCC------CeeecCCCCceeeeeEEEEecc-------------CCCeEEEEeCCCccch
Q 008909 373 AIAIVGRPNVGKSSILNALVGED------RTIVSPISGTTRDAIDTEFTGP-------------EGQKFRLIDTAGIRKR 433 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~------~~~~~~~~gtt~~~~~~~~~~~-------------~~~~i~l~DTpG~~~~ 433 (549)
+|+++|++|+|||||++++++.. .......+|+|++.....+... .+..+.+|||||+..+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 81 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL 81 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHH
Confidence 68999999999999999999731 1222334577777655444332 2568999999998432
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCch-hhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ-QTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~ 512 (549)
...++..+..+|++++|+|++++.+.++...+......+.|+++|+||+|+...... ...+.+.+
T Consensus 82 --------------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 82 --------------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 334555678899999999999877777766555555568899999999999753221 11222223
Q ss_pred HHHHHHhc--CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 513 DVREKLRA--LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~--~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+...+.. ....+++++||++|.|+++|+++|...
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 33333322 234689999999999999999998753
No 61
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=1.3e-18 Score=159.33 Aligned_cols=161 Identities=26% Similarity=0.351 Sum_probs=110.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
|+|+++|++|+|||||+|+|++.. ..+...+++|.....+.+.+.+.++.+|||||+.+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~------------ 67 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNT------------ 67 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCch------------
Confidence 689999999999999999999876 3345567888888877777778899999999985422111000
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHh-hhccEEEEEEeCCCCCCc--c-hHHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAI-EESCVIIFLVDGQAGLTA--A-DEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i-~~~d~illVvD~~~~~~~--~-~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
+.......+ ..+|++++|+|++..... . ...+...+.....+.|+++|+||+|+....
T Consensus 68 ------------------~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 68 ------------------IEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE 129 (168)
T ss_pred ------------------HHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh
Confidence 001111111 236899999998765332 1 123444554443478999999999987543
Q ss_pred HHh-HHHHHH-cCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 320 IMQ-VSEFWS-LGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 320 ~~~-~~~~~~-~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... ...+.. .+.+++++||++|.|++++++++.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 130 DLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 322 122222 355789999999999999999887654
No 62
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.80 E-value=4.4e-18 Score=154.92 Aligned_cols=166 Identities=33% Similarity=0.442 Sum_probs=121.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+||||++|++++.........+.+++........ ..+..+.+|||||+..... .........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~~~------~~~~~~~~~ 75 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT-DDDAQIIFVDTPGIHKPKK------KLGERMVKA 75 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE-cCCeEEEEEECCCCCcchH------HHHHHHHHH
Confidence 357999999999999999999998766666666777766554433 3457899999999965322 111222334
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
....+..+|++++|+|++++.+.....++..+...+.|+++|+||+|+...... ...............+++++|
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~s 150 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKED-----LLPLLEKLKELGPFAEIFPIS 150 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHH-----HHHHHHHHHhccCCCceEEEE
Confidence 556789999999999999876777777778888888999999999999742211 112222222333356899999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
++++.|+++|+++|.+.+
T Consensus 151 ~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 151 ALKGENVDELLEEIVKYL 168 (168)
T ss_pred eccCCChHHHHHHHHhhC
Confidence 999999999999998753
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.80 E-value=2.5e-18 Score=156.71 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=106.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+++++|.+|+|||||++++++... +....+++.+........ ++ ..+.+|||||+.++..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-------------- 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFSA-------------- 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcchhH--------------
Confidence 4899999999999999999998643 333344444444433332 33 4688999999976432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+... ++..+.. .+.|+++|+||+|+....... .++..+..... +.
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~-----~~~~~~~~~~~-~~ 139 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS-----REEGQELARKL-KI 139 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec-----HHHHHHHHHHc-CC
Confidence 1223678999999999999865444433 4444433 368999999999997643322 12233333333 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|++++|+.|.+.+
T Consensus 140 ~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 140 PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 899999999999999999998765
No 64
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.80 E-value=1.1e-18 Score=158.94 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=105.3
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||++++++.... .....|+.+.....+...+ ...+.+|||||+.++..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAM-------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccchH--------------
Confidence 47899999999999999999976532 2233344444333343322 246788999999765321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|+++..+.+.. .++..+... +.|+++|+||+|+...+.... +......+..+ .+
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~-~~ 139 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR-----EEGQALARQWG-CP 139 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH-----HHHHHHHHHcC-Ce
Confidence 12357899999999999886554443 345555542 689999999999865433221 11122222233 68
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|+++.+.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 140 FYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998754
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.80 E-value=1.6e-18 Score=158.42 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=102.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEe-ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT-GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~-~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||++++++.. +.....+.+.... ...+. ......+.+|||||+.++.. .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------~ 65 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPA--------------M 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchH--------------H
Confidence 478999999999999999999865 3223333222111 11111 12235688999999976432 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++++|+|++++.+.+... ++..+.+ .+.|+++|+||+|+...+.... +....... ...
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----~~~~~~~~-~~~ 139 (165)
T cd04140 66 QRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-----NEGAACAT-EWN 139 (165)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-----HHHHHHHH-HhC
Confidence 123578999999999999866554443 4555544 3589999999999976433221 11122222 223
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+++++||++|.|++++|++|..+
T Consensus 140 ~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEEEeecCCCCCHHHHHHHHHhc
Confidence 589999999999999999999865
No 66
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.80 E-value=1.4e-18 Score=161.14 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=108.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+++|||+|++++++.. +.....|... +.....+... ....+.+|||+|+.++..+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~-f~~~~~pT~~-~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~------------- 69 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC-FPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNV------------- 69 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC-CCCccCCcee-eeeEEEEEECCEEEEEEEEECCCchhhHhh-------------
Confidence 4589999999999999999999764 3333333332 2222233321 2346899999999665321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCC----------CchhhhHHHHHHHH
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPN----------KNQQTATYYEQDVR 515 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~----------~~~~~~~~~~~~~~ 515 (549)
...+++++|++|+|+|++++.+.+.. .|+..+... +.|++||+||+|+... +...+. .++..
T Consensus 70 -~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~---~~~~~ 145 (182)
T cd04172 70 -RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVS---YDQGA 145 (182)
T ss_pred -hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCC---HHHHH
Confidence 12257999999999999998777664 466666654 6899999999998542 111111 23334
Q ss_pred HHHhcCCCCCEEEEccccCCC-HHHHHHHHHhh
Q 008909 516 EKLRALDWAPIVYSTAIAGQS-VDKYVLYLATS 547 (549)
Q Consensus 516 ~~l~~~~~~~~i~iSA~~g~~-v~~L~~~l~~~ 547 (549)
+..+..+..++++|||++|.| |+++|..+.++
T Consensus 146 ~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 146 NMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 444444435899999999998 99999998763
No 67
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=2.2e-18 Score=177.90 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=118.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
...|+++|.+|+|||||+|++++.+ ..++++|+||.+.....+.+.++..+.+|||||+.+..+ ........
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~-------~~~gLg~~ 229 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS-------EGVGLGHQ 229 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc-------ccchHHHH
Confidence 4589999999999999999999875 567889999999888777654478899999999965221 11223456
Q ss_pred HHHHHhcCCcEEEEEEcccc---CCHhH-HHHHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC
Q 008909 451 AFRAIRRSDVVALVIEAMAC---ITEQD-CRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~---~~~~~-~~~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~ 521 (549)
.++++..++++|+|+|+++. ...++ ..+..++..+ ++|++||+||+|+.... . ..+.+.+.+
T Consensus 230 fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e----~l~~l~~~l--- 300 (424)
T PRK12297 230 FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--E----NLEEFKEKL--- 300 (424)
T ss_pred HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--H----HHHHHHHHh---
Confidence 67888999999999999753 22233 3355556553 68999999999974321 1 112222322
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
. .+++++||+++.|+++|+++|.+.+
T Consensus 301 ~-~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 301 G-PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred C-CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 5799999999999999999998764
No 68
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=3.5e-18 Score=156.22 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=107.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+|+++|.+|+|||||++++++.... ....+..+.+.....+.. ++ ..+.+|||||+.++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~------------- 67 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS-ERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRT------------- 67 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc-ccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHH-------------
Confidence 358999999999999999999876432 222233333333333332 33 4789999999855421
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
.....++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+...+... .....+........
T Consensus 68 -~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~ 141 (165)
T cd01864 68 -ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL-----FEEACTLAEKNGML 141 (165)
T ss_pred -HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-----HHHHHHHHHHcCCc
Confidence 223457899999999999986554443 456655543 68999999999997544322 22233344444445
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.++++||++|.|++++|+.+.+.+
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 789999999999999999998753
No 69
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=7.8e-19 Score=184.75 Aligned_cols=156 Identities=33% Similarity=0.422 Sum_probs=120.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|++|||||||+|+|++.....+++.+++|.+.....+.++|.++.+|||||+.++.. ..+.+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~----~ie~~------- 283 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD----EVEKI------- 283 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc----HHHHH-------
Confidence 4789999999999999999999987777889999999999988899999999999999864211 11110
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (549)
-.+.+...+..+|++++|+|++.+.+..+..++.. ..+.|+++|+||+|+.+.....
T Consensus 284 -------------------gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~~~piiiV~NK~DL~~~~~~~ 340 (449)
T PRK05291 284 -------------------GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE----LKDKPVIVVLNKADLTGEIDLE 340 (449)
T ss_pred -------------------HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----cCCCCcEEEEEhhhccccchhh
Confidence 01234567889999999999988765554333222 3478999999999997543221
Q ss_pred HHHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 323 ~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
...+.+++++||++|.|++++++.+.+.+.
T Consensus 341 ----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 341 ----EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ----hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 233457899999999999999999987664
No 70
>PRK09866 hypothetical protein; Provisional
Probab=99.79 E-value=7.7e-18 Score=175.93 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=85.5
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCC--cEEEEEecc
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK--GCLIVVNKW 496 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~--p~ivv~NK~ 496 (549)
..+++++||||+..... ... ...+.+.+..+|++|||+|+.......+..+++.+.+.++ |+++|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~-----~~L----~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQ-----PHL----QKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccc-----hHH----HHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 46899999999964211 011 1223347999999999999998888889899998988874 999999999
Q ss_pred cCCCCCchhhhHHHHHHHHHHHhc--CCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 497 DTIPNKNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 497 Dl~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
|+..... ...+.+...+...+.+ ..+..+||+||++|.|++.|++.|.+
T Consensus 300 Dl~dree-ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 300 DQQDRNS-DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cCCCccc-chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 9864222 1122333444334332 23567999999999999999999876
No 71
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.79 E-value=2e-18 Score=159.36 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=106.7
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+++++|.+|+|||||+++++... +.....|+ +.+.....+.. ++ ..+.||||||+.++..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~~~~~pt-~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~------------- 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPT-VFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRL------------- 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCc-eeeeeEEEEEE-CCEEEEEEEEECCCccchhhh-------------
Confidence 478999999999999999999764 33333443 33333323332 33 46889999999765321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH--HHHHHHHh--CCcEEEEEecccCCCCCchhh-------hHHHHHHHHHHH
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQE--GKGCLIVVNKWDTIPNKNQQT-------ATYYEQDVREKL 518 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~--~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~-------~~~~~~~~~~~l 518 (549)
...+++.+|++|+|+|++++.+.+... |+..+... +.|+|||+||+|+........ .....++..+..
T Consensus 66 -~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 66 -RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred -hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 112678999999999999876666553 55666543 689999999999865321000 000012222333
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+..+...++++||++|.||+++|+.+++.
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 33444689999999999999999998864
No 72
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.79 E-value=3.2e-18 Score=156.84 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=108.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++.. +.....++.+.+.....+...+ ...+.+|||||+.++..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------------- 67 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------------- 67 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH--------------
Confidence 3589999999999999999999765 3334444444443333333222 24789999999865421
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
....+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+....... .++..+..... ..+
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 141 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS-----KEEGEALADEY-GIK 141 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC-----HHHHHHHHHHc-CCE
Confidence 123467999999999999886554443 355555543 68999999999997643322 12223333333 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|.++.+.+
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 142 FLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 73
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.1e-18 Score=181.31 Aligned_cols=158 Identities=34% Similarity=0.437 Sum_probs=124.7
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
++|+++|.+|+|||||+|++++.....+...+|+|++........ ++..+.+|||||+.+.. ..........+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~------~~~~~~~~~~~ 74 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD------DGFEKQIREQA 74 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc------hhHHHHHHHHH
Confidence 478999999999999999999987777888999999988777664 67899999999996511 01122234445
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
..+++.+|++|+|+|++++.+..+..+..++...++|+++|+||+|+.... ....+. ...+...++++||
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~---------~~~~~~-~~lg~~~~~~iSa 144 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE---------ADAYEF-YSLGLGEPYPISA 144 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch---------hhHHHH-HhcCCCCCEEEEe
Confidence 667899999999999999888888888888888899999999999965421 111111 2344446899999
Q ss_pred ccCCCHHHHHHHHHh
Q 008909 532 IAGQSVDKYVLYLAT 546 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~ 546 (549)
++|.|+++|++.+.+
T Consensus 145 ~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 145 EHGRGIGDLLDAILE 159 (435)
T ss_pred eCCCCHHHHHHHHHh
Confidence 999999999999875
No 74
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.79 E-value=2.9e-18 Score=159.05 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=108.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-----------CCCeEEEEeCCCccchhhhccC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-----------EGQKFRLIDTAGIRKRAAIASS 439 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-----------~~~~i~l~DTpG~~~~~~~~~~ 439 (549)
..+++++|.+|+|||||++++++.. +.....++.+.+.....+.+. ....+.+|||||+.++..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---- 78 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS---- 78 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH----
Confidence 3589999999999999999998764 333444444444433333321 124688999999865432
Q ss_pred CChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHH
Q 008909 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (549)
Q Consensus 440 ~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~ 514 (549)
....+++.+|++++|+|++++.+.++.. |+..+... +.|+++|+||+|+....... .++.
T Consensus 79 ----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~-----~~~~ 143 (180)
T cd04127 79 ----------LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS-----EEQA 143 (180)
T ss_pred ----------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC-----HHHH
Confidence 1233679999999999998865555543 55555543 67899999999997643322 1223
Q ss_pred HHHHhcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 515 REKLRALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 515 ~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+..... +.+++++||++|.|++++|+.|.+.
T Consensus 144 ~~~~~~~-~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 144 KALADKY-GIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred HHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3333333 3689999999999999999999864
No 75
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2e-18 Score=165.25 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=109.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|..|+|||+|++++++.. +.....|.+..+.. ..+... ....+.||||||+.++..+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~------------ 77 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNV------------ 77 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHH------------
Confidence 34689999999999999999999764 43344444333332 223221 2357899999999765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhH--HHHHHHHHHh--CCcEEEEEecccCCCCC----------chhhhHHHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQD--CRIAERIEQE--GKGCLIVVNKWDTIPNK----------NQQTATYYEQDV 514 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~l~~l~~~--~~p~ivv~NK~Dl~~~~----------~~~~~~~~~~~~ 514 (549)
...++++||++|+|||++++.+.+. ..|+..+... +.|+|||+||+|+.... ...+. .++.
T Consensus 78 --~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs---~~e~ 152 (232)
T cd04174 78 --RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPIS---YEQG 152 (232)
T ss_pred --HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCC---HHHH
Confidence 1236899999999999998777665 3566777653 68999999999985321 01111 2334
Q ss_pred HHHHhcCCCCCEEEEccccCC-CHHHHHHHHHhh
Q 008909 515 REKLRALDWAPIVYSTAIAGQ-SVDKYVLYLATS 547 (549)
Q Consensus 515 ~~~l~~~~~~~~i~iSA~~g~-~v~~L~~~l~~~ 547 (549)
.+..+..+..++++|||++|. ||+++|..++..
T Consensus 153 ~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 153 CALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred HHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 444444443369999999997 899999998764
No 76
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.79 E-value=3.6e-18 Score=156.26 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=107.5
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|.+|+|||||++++++.. +.....++.+.+.....+...+ ..++.+|||||+.++.. .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------~ 67 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--------------I 67 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH--------------H
Confidence 579999999999999999999765 3334445555444433343222 34789999999865421 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.+|++++|+|++++-+..... |+..+.. .+.|+++|+||+|+....... .+........ .+.++
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~-----~~~~~~~~~~-~~~~~ 141 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD-----YSEAQEFADE-LGIPF 141 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC-----HHHHHHHHHH-cCCeE
Confidence 233578999999999998754444333 4555544 358999999999987544332 1222233332 34689
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|++++|..|.+.+
T Consensus 142 ~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 142 LETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 77
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=1.4e-18 Score=162.52 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=106.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++... .....|........ ..... ....+.+|||||+.++..+.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~l~-------------- 65 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQEEFDRLR-------------- 65 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCccCCcceeeeEE-EEEECCEEEEEEEEECCCChhccccc--------------
Confidence 689999999999999999998653 22223333222222 22221 23478999999997653211
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh-H------HHHHHHHHHHhc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-T------YYEQDVREKLRA 520 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-~------~~~~~~~~~l~~ 520 (549)
..+++.+|++++|+|++++-+.+.. .|+..+... +.|+++|+||+|+......... . ...++..+....
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 1257899999999999987655554 366666654 6899999999999754321100 0 001222333444
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+..+++++||++|.||+++|.+|.+.+
T Consensus 146 ~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 146 INALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred cCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 4446899999999999999999998753
No 78
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.3e-18 Score=179.78 Aligned_cols=164 Identities=21% Similarity=0.246 Sum_probs=118.8
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.....|+++|.+|+|||||+|+|.+.+ ..++++|+||++.....+.. ++.++.||||||+.+.. .......
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliega-------s~g~gLg 227 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGA-------SEGKGLG 227 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEE-CCeEEEEEECCCCcccc-------chhhHHH
Confidence 345689999999999999999999875 56788999999988877765 55789999999996421 1122234
Q ss_pred HHHHHHHhcCCcEEEEEEcccc----CCHhHHH-HHHHHH--------------HhCCcEEEEEecccCCCCCchhhhHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMAC----ITEQDCR-IAERIE--------------QEGKGCLIVVNKWDTIPNKNQQTATY 509 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~----~~~~~~~-~l~~l~--------------~~~~p~ivv~NK~Dl~~~~~~~~~~~ 509 (549)
...++++..||++|+|||+++. ...++.. +..++. ..++|+|||+||+|+.....
T Consensus 228 ~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e------ 301 (500)
T PRK12296 228 LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE------ 301 (500)
T ss_pred HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH------
Confidence 4567889999999999999742 1122222 222332 23689999999999864321
Q ss_pred HHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 510 YEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 510 ~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+.+...+...+ .+++++||+++.|+++|+.+|.+++
T Consensus 302 l~e~l~~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 302 LAEFVRPELEARG-WPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred HHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1223333444443 5899999999999999999998765
No 79
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.79 E-value=3.3e-18 Score=163.43 Aligned_cols=155 Identities=18% Similarity=0.137 Sum_probs=109.5
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC--CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++.. +.....+..+.+.....+...+ ...+.||||||+..+.. .
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~--------------l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK--------------M 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH--------------H
Confidence 68999999999999999999764 4445556666666555555433 35789999999855422 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh------CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++|+|+|++++.+.+... |+..+.+. +.|+++|+||+|+...+... .+...+.... .+
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~-----~~~~~~~~~~-~~ 140 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK-----DDKHARFAQA-NG 140 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC-----HHHHHHHHHH-cC
Confidence 223578999999999999865555443 55555543 35799999999997543322 1122222232 34
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|++.+
T Consensus 141 ~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 141 MESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 80
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=3.1e-18 Score=171.51 Aligned_cols=164 Identities=33% Similarity=0.486 Sum_probs=124.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
...|+++|.+|||||||+|+|+|.+...+++.+.+|+....+....++.++.++||||+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~---------------- 68 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR---------------- 68 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh----------------
Confidence 5679999999999999999999998888889999998887766666668999999999865221
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCC-hh-hH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP-RK-GI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~-~~-~~ 320 (549)
.+...+...+...+..+|++++|+|++.++......+...+... +.|+++|+||+|+. .. ..
T Consensus 69 --------------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~l 132 (292)
T PRK00089 69 --------------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKEEL 132 (292)
T ss_pred --------------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHHHH
Confidence 01122334556678899999999999887766666666666643 68999999999998 32 22
Q ss_pred HhHHHHHH--cC-CCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 321 MQVSEFWS--LG-FSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 321 ~~~~~~~~--~~-~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
......+. .+ .+++++||+++.|+.++++.+...++..
T Consensus 133 ~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 133 LPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 22222222 12 3689999999999999999999887643
No 81
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=3e-18 Score=158.51 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=107.5
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||+|++++++.. +.....|....+. ...+... ....+.+|||||+.++..+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~-------------- 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNV-------------- 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhc--------------
Confidence 378999999999999999999764 4333344333332 2233221 2346889999999765321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCC----------CchhhhHHHHHHHHH
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPN----------KNQQTATYYEQDVRE 516 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~----------~~~~~~~~~~~~~~~ 516 (549)
...+++++|++|+|+|++++.+.+.. .|+..+.+. +.|+++|+||+|+... +...+. .++..+
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~---~~e~~~ 142 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVS---YEQGCA 142 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCC---HHHHHH
Confidence 11257999999999999998777763 466666654 6899999999998542 111111 223334
Q ss_pred HHhcCCCCCEEEEccccCCC-HHHHHHHHHhh
Q 008909 517 KLRALDWAPIVYSTAIAGQS-VDKYVLYLATS 547 (549)
Q Consensus 517 ~l~~~~~~~~i~iSA~~g~~-v~~L~~~l~~~ 547 (549)
..+..+..+++++||++|.| |+++|..+.++
T Consensus 143 ~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 143 IAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 44444434799999999995 99999998763
No 82
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.79 E-value=2.3e-18 Score=157.17 Aligned_cols=155 Identities=20% Similarity=0.188 Sum_probs=105.4
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||+++++... + ....++|+.+.....+...+ ...+.+|||||+.++..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM-------------- 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhH--------------
Confidence 378999999999999999998653 2 23334455444444444322 335679999999664321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++++|++++|+|+++..+.+.. .++..+.. .+.|+++|+||+|+........ ....+.....+ .+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~-~~ 139 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK-----EQGQNLARQWG-CA 139 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH-----HHHHHHHHHhC-CE
Confidence 12267999999999999875544443 35555543 3689999999999976433221 11222222233 58
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|.++.+.+
T Consensus 140 ~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 140 FLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 83
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.79 E-value=4.9e-18 Score=155.41 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=104.3
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCce-eeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT-RDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt-~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+++++|.+|+|||||++++++.. +.. ..+.++ .+.....+...+ ..++.+|||||+.++..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------- 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK-FMA-DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA-------------- 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCC-CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH--------------
Confidence 479999999999999999999764 322 223332 222222222211 24689999999865432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
....+++++|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+....... .++..+..... +.+
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 140 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT-----YEEAKQFADEN-GLL 140 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC-----HHHHHHHHHHc-CCE
Confidence 1233679999999999999865554443 4454444 357899999999997654322 12233333333 458
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++||++|.|++++|..+++.
T Consensus 141 ~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 141 FLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999988754
No 84
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.78 E-value=4.7e-18 Score=168.14 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=121.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH-HhHHHHH-HcCCCceEeeccCC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-MQVSEFW-SLGFSPLPISAISG 341 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~-~~~~~~~-~~~~~~v~vSA~~g 341 (549)
+++...+..+|++|+|+|++.+.+..+..+.+.+. ++|+++|+||+|+.+... .....++ ..+.+++++||+++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 45667889999999999999888877766666552 689999999999975432 2222222 24557899999999
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCe
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~ 421 (549)
.|+.+|++.+...++................+++++|.+|+||||++|++++.....++..||+|+......+ +..
T Consensus 89 ~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 164 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----SDG 164 (276)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----CCC
Confidence 9999999988877754322111111112346899999999999999999999888889999999998764443 246
Q ss_pred EEEEeCCCccch
Q 008909 422 FRLIDTAGIRKR 433 (549)
Q Consensus 422 i~l~DTpG~~~~ 433 (549)
+.++||||+...
T Consensus 165 ~~l~DtPG~~~~ 176 (276)
T TIGR03596 165 LELLDTPGILWP 176 (276)
T ss_pred EEEEECCCcccC
Confidence 899999999553
No 85
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.78 E-value=5e-18 Score=156.02 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=106.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.. +.....|.+..+.....+...+ ...+.+|||||+.++.. ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC--------------IA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh--------------hH
Confidence 68999999999999999999864 4444455555555444443322 34789999999966432 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
..+++.+|++++|+|++++-+... ..|+..+.+. ..|+++|+||+|+......... .+......... +.++
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~---~~~~~~~~~~~-~~~~ 142 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALM---EQDAIKLAAEM-QAEY 142 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccccc---HHHHHHHHHHc-CCeE
Confidence 336899999999999987543333 3466665543 2568999999998654332111 11222222222 3589
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|++++|+.+++++
T Consensus 143 ~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 143 WSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 86
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2e-18 Score=151.72 Aligned_cols=155 Identities=16% Similarity=0.089 Sum_probs=115.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..++.++|..|+|||+|+.+++... |......+...+.....+...+ ..+++||||+|++.|.++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr-F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv------------- 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKR-FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV------------- 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccC-ccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH-------------
Confidence 3578999999999999999999775 4444334455555554444322 347999999999888664
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
+..+|++|-++|||||++++.++..+. ||..++.+ +.-+++++||+||...+.+.. ++ .+.++...+..
T Consensus 72 -~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~-----EE-GeaFA~ehgLi 144 (216)
T KOG0098|consen 72 -TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSK-----EE-GEAFAREHGLI 144 (216)
T ss_pred -HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccH-----HH-HHHHHHHcCce
Confidence 234789999999999999987777765 66666654 677889999999987765442 22 34444445678
Q ss_pred EEEEccccCCCHHHHHHHHHh
Q 008909 526 IVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~ 546 (549)
++++||+++.||++.|--.+.
T Consensus 145 fmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 145 FMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred eehhhhhhhhhHHHHHHHHHH
Confidence 899999999999999976543
No 87
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=4.5e-18 Score=154.86 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=107.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.. +...+.++.+.+.....+...+ ...+.+|||||+.++.. ..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------------~~ 66 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT--------------IT 66 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh--------------hH
Confidence 68999999999999999999765 3344455555554444444322 24678999999865432 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
..+++.+|++++|+|++++-+.+... |+..+... +.|+++|+||+|+...+.... ++ ...+.+....+++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~-----~~-~~~~~~~~~~~~~ 140 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD-----EQ-GNKLAKEYGMDFF 140 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH-----HH-HHHHHHHcCCEEE
Confidence 23678999999999999865544443 45555443 589999999999876543321 11 2222222336899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.||+++|.+|.+++
T Consensus 141 e~Sa~~~~~v~~~f~~l~~~~ 161 (161)
T cd04117 141 ETSACTNSNIKESFTRLTELV 161 (161)
T ss_pred EEeCCCCCCHHHHHHHHHhhC
Confidence 999999999999999998763
No 88
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=5.9e-18 Score=157.92 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=115.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeec---------------CCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhc
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVS---------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIA 437 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~---------------~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~ 437 (549)
+|+++|.+|+||||++|++++....... ...++|.+........ .+..+.+|||||+.++.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~--- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDFS--- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHHH---
Confidence 4789999999999999999986543221 1234555544444432 46789999999985431
Q ss_pred cCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHH
Q 008909 438 SSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK 517 (549)
Q Consensus 438 ~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 517 (549)
.....+++.+|++++|+|+.++.......++..+...+.|+++|+||+|+....... ...+++.+.
T Consensus 77 -----------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~---~~~~~~~~~ 142 (189)
T cd00881 77 -----------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLE---EVLREIKEL 142 (189)
T ss_pred -----------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHH---HHHHHHHHH
Confidence 224456789999999999998887778888888877899999999999998632221 223444455
Q ss_pred HhcC-------------CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 518 LRAL-------------DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~~-------------~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+... ...+++++||++|.|+++++.++.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 5442 356899999999999999999998754
No 89
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=2.1e-18 Score=163.73 Aligned_cols=151 Identities=21% Similarity=0.254 Sum_probs=110.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeec------------------------------CCCCceeeeeEEEEeccCCCeE
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEGQKF 422 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~~~~i 422 (549)
+|+++|++|+|||||+++|++....... ...|+|++.....+. +++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence 4799999999999999999865433221 125889998777765 478899
Q ss_pred EEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCC-cEEEEEecccCCCC
Q 008909 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDTIPN 501 (549)
Q Consensus 423 ~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~-p~ivv~NK~Dl~~~ 501 (549)
.+|||||+.+|. ..+...++.+|++++|+|++.+...++...+..+...+. ++|+|+||+|+...
T Consensus 80 ~liDTpG~~~~~--------------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 80 IIADTPGHEQYT--------------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEEECCcHHHHH--------------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999996542 224456889999999999999887777777777766665 47778999998753
Q ss_pred CchhhhHHHHHHHHHHHhcCCC--CCEEEEccccCCCHHH
Q 008909 502 KNQQTATYYEQDVREKLRALDW--APIVYSTAIAGQSVDK 539 (549)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~--~~~i~iSA~~g~~v~~ 539 (549)
.. .........+.+.+...+. .+++++||++|.|+++
T Consensus 146 ~~-~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 146 SE-EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 22 2222334455555555543 4699999999999975
No 90
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.78 E-value=7.7e-18 Score=153.96 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=104.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|.+|+|||||++++++... .....+.++.+.....+... ....+.+|||||+.++.. .
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~--------------~ 66 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT--------------I 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH--------------H
Confidence 4789999999999999999998753 23333433333322222211 235789999999865422 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.+|++++|+|++++-+.+.. .|+..+... +.|+++|+||+|+...+.... +...+..... +.++
T Consensus 67 ~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~~~ 140 (165)
T cd01865 67 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSS-----ERGRQLADQL-GFEF 140 (165)
T ss_pred HHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCH-----HHHHHHHHHc-CCEE
Confidence 23467999999999999875443333 355556543 578999999999976543221 1222222333 3489
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|+++||+++.+.+
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 141 FEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998753
No 91
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.78 E-value=4.2e-18 Score=159.52 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=103.3
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++.. +... .++++.+........ ++ ..+.+|||||+.++.. .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------------~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FVET-YDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEYTA--------------L 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcc-CCCchHhhEEEEEEE-CCEEEEEEEEECCCchhhHH--------------H
Confidence 47899999999999999998764 3222 333333333223332 33 3588999999866432 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++|+|+|+++..+..... |+..+.. .+.|+++|+||+|+........ ....+..... +
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~-----~~~~~~~~~~-~ 137 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST-----EEGAALARRL-G 137 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH-----HHHHHHHHHh-C
Confidence 223689999999999998865545433 5555543 3589999999999975433221 1122222323 3
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.|++++|.++.+.+
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 92
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.78 E-value=6e-18 Score=154.33 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=103.5
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.... . ....++.+.........+ ...+.+|||||+.++.. ..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------------~~ 65 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV-D-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA--------------MR 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-c-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH--------------HH
Confidence 6899999999999999999986532 2 223344444333333212 34678999999976432 11
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
..+++.+|++++|+|++++.+.+... +...+.. .+.|+++|+||+|+...+... .......... .+.++
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~-----~~~~~~~~~~-~~~~~ 139 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS-----TEEGKELARQ-WGCPF 139 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc-----HHHHHHHHHH-cCCEE
Confidence 23578999999999998864444433 3334433 268999999999997643322 1122222232 23689
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|++++|++|.+.+
T Consensus 140 ~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 140 LETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred EEeecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 93
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=3.7e-18 Score=178.20 Aligned_cols=167 Identities=21% Similarity=0.277 Sum_probs=122.3
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.....|+|+|.||||||||+|+|++.+ ..++++|++|.....+.+.+.+..+.++||||+.......
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------------ 223 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------------ 223 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------------
Confidence 346899999999999999999999876 5678999999999999999989999999999986422110
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC----CcchHH-HHHHHHH------------ccCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----TAADEE-IADWLRK------------NYMD 303 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~----~~~~~~-~~~~l~~------------~~~~ 303 (549)
..+...+++++.+|+++|+|+|++... ...+.. +...|.. .+.+
T Consensus 224 -------------------~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 224 -------------------KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred -------------------hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 013345667889999999999986421 111222 2222221 1247
Q ss_pred CeEEEEeccCCCChhhHH-hH-H-HHHHcCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 304 KFIILAVNKCESPRKGIM-QV-S-EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~-~~-~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
+|+++|+||+|+.+.... .. . .+...+++++++||+++.|+.+|+.++.+.+....
T Consensus 285 kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 285 RPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 899999999998654321 11 1 22344678999999999999999999988886543
No 94
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.78 E-value=4.3e-18 Score=159.54 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=106.8
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|..|+|||+|+.+++... +.....|... +.....+... ....+.+|||||+.++..+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l-------------- 67 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA-FPKEYIPTVF-DNYSAQTAVDGRTVSLNLWDTAGQEEYDRL-------------- 67 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCcCCCCceE-eeeEEEEEECCEEEEEEEEECCCchhhhhh--------------
Confidence 589999999999999999999764 3333334333 2222223221 2346889999999765321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH--HHHHHHH--hCCcEEEEEecccCCCCCchh-hhH------HHHHHHHHHHh
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ--EGKGCLIVVNKWDTIPNKNQQ-TAT------YYEQDVREKLR 519 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~--~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~-~~~------~~~~~~~~~l~ 519 (549)
...+++++|++|+|+|++++.+.+... |...+.. .+.|++||+||+|+....... ... ...++..+...
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 112579999999999999876666653 4454544 368999999999996532110 000 00122233333
Q ss_pred cCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 520 ALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 520 ~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+..+++++||++|.||+++|.++++.+
T Consensus 148 ~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 148 QIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 34435899999999999999999998753
No 95
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.78 E-value=6.8e-18 Score=155.41 Aligned_cols=153 Identities=19% Similarity=0.182 Sum_probs=105.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+++++|.+|+|||||++++++... .....+ |+.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~-t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~l------------- 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-PDYHDP-TIEDAYKQQARI-DNEPALLDILDTAGQAEFTAM------------- 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CCCcCC-cccceEEEEEEE-CCEEEEEEEEeCCCchhhHHH-------------
Confidence 4799999999999999999997653 222222 222222222322 33 46889999999664321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+... |+..+.. .++|+++|+||+|+...+.... ++..+..+.. +.
T Consensus 67 -~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~-----~~~~~~a~~~-~~ 139 (172)
T cd04141 67 -RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT-----EEGRNLAREF-NC 139 (172)
T ss_pred -hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH-----HHHHHHHHHh-CC
Confidence 223578999999999999977766655 3344443 3689999999999865443321 1222233333 46
Q ss_pred CEEEEccccCCCHHHHHHHHHhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++|||++|.||+++|.+|.+.
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~~ 162 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVRE 162 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHHH
Confidence 89999999999999999999864
No 96
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=5.5e-18 Score=157.41 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=105.3
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|..|+|||||++++++.. +.....|....+.....+...+ ...+.+|||+|+.++.. ..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~--------------~~ 66 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE-FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN--------------ML 66 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH--------------hh
Confidence 68999999999999999998764 3333445444454433343322 24689999999966432 11
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
..+++.+|++++|+|++++.+.++.. |+..+... ..| |+|+||+|+.............++..+..+.. +.+++
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~ 144 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM-KAPLI 144 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc-CCEEE
Confidence 23679999999999999876655543 55656542 355 68899999863211110011122333333333 36899
Q ss_pred EEccccCCCHHHHHHHHHhh
Q 008909 528 YSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~ 547 (549)
++||++|.|++++|+++.+.
T Consensus 145 e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 145 FCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998764
No 97
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.78 E-value=4.1e-18 Score=156.37 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=110.7
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc-eEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
.|+++|++|||||||+|+|.+.. ..++..+++|.....+.+.+.+. .+.+|||||+.......+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------- 67 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG------------- 67 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-------------
Confidence 58999999999999999999875 35667788888887777777776 8999999998542211100
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-CCcchH-HHHHHHHHcc---CCCeEEEEeccCCCChh
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAADE-EIADWLRKNY---MDKFIILAVNKCESPRK 318 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~-~~~~~~-~~~~~l~~~~---~~~p~ivv~NK~D~~~~ 318 (549)
+.+.+.+.+..+|++++|+|++.+ ...... .+.+.+.... .++|+++|+||+|+.+.
T Consensus 68 ------------------~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 68 ------------------LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred ------------------chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 112344556789999999999875 222222 2333343321 36899999999998654
Q ss_pred hHHh--HHHHHHc--CCCceEeeccCCCChhhhHHHHHHH
Q 008909 319 GIMQ--VSEFWSL--GFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 319 ~~~~--~~~~~~~--~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.... ...+... +.+++++||+++.|+.++++.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 130 EELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 3321 1222222 5678999999999999999887653
No 98
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.78 E-value=8.3e-18 Score=153.01 Aligned_cols=154 Identities=20% Similarity=0.204 Sum_probs=106.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc---CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP---EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~---~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
+|+++|.+|+|||||++++++.. +.....++.+.+.....+... ....+.+|||||+.++..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------------- 66 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA-------------- 66 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH--------------
Confidence 68999999999999999999764 333334555555544344332 235789999999865432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH--hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
....+++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+........ ++..+..... +.++
T Consensus 67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~-----~~~~~~~~~~-~~~~ 140 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN-----EEAEALAKRL-QLPL 140 (162)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH-----HHHHHHHHHc-CCeE
Confidence 1234679999999999998765444443 4444443 3799999999999976443321 2222233333 3589
Q ss_pred EEEccccCCCHHHHHHHHHhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++||++|.|++++|++|...
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 141 FRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 99
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.78 E-value=6e-18 Score=154.05 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=102.2
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++... .....+....+........ .....+.+|||||+.++.. ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------~~ 66 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT--------------MH 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh--------------hh
Confidence 689999999999999999987642 2222222222221112221 1234688999999976532 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
..+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+... . .......... .+.++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--~------~~~~~~~~~~-~~~~~~~ 137 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--V------TQKKFNFAEK-HNLPLYY 137 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--H------HHHHHHHHHH-cCCeEEE
Confidence 2367999999999999987665554 466667655 7899999999998432 1 1111122222 2468999
Q ss_pred EccccCCCHHHHHHHHHhh
Q 008909 529 STAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~ 547 (549)
+||++|.|++++|+.+.+.
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 138 VSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999864
No 100
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.78 E-value=8.1e-18 Score=158.15 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=103.6
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCC-Ceeec--------------CCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhh
Q 008909 372 PAIAIVGRPNVGKSSILNALVGED-RTIVS--------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~-~~~~~--------------~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~ 436 (549)
.+|+++|.+++|||||++++++.. .+... ...|+|.+.....+. +++.++.+|||||+.+|..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~- 80 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHADFGG- 80 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHHHHH-
Confidence 589999999999999999999631 12111 124555555444444 3567899999999976532
Q ss_pred ccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHH
Q 008909 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (549)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 516 (549)
....+++.+|++++|+|++++...+...++..+...++|+++|+||+|+....... ..+.+.+
T Consensus 81 -------------~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~----~~~~~~~ 143 (194)
T cd01891 81 -------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEE----VVDEVFD 143 (194)
T ss_pred -------------HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH----HHHHHHH
Confidence 23457899999999999998766666667777777889999999999997533222 2333334
Q ss_pred HHhc------CCCCCEEEEccccCCCHH
Q 008909 517 KLRA------LDWAPIVYSTAIAGQSVD 538 (549)
Q Consensus 517 ~l~~------~~~~~~i~iSA~~g~~v~ 538 (549)
.+.. ..+.+++++||++|.|++
T Consensus 144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 144 LFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred HHHHhCCccccCccCEEEeehhcccccc
Confidence 3321 124589999999997663
No 101
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=5.6e-18 Score=174.93 Aligned_cols=164 Identities=28% Similarity=0.360 Sum_probs=120.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
-.+.|+|+|.||||||||+|+|++.+ +.+++++++|..+..+.+.+. +..+.++||||+........
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~----------- 224 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV----------- 224 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc-----------
Confidence 35699999999999999999999876 557889999999999988887 78899999999864222110
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC---CCcch-HHHHHHHHHc---cCCCeEEEEeccC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAAD-EEIADWLRKN---YMDKFIILAVNKC 313 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~---~~~~~-~~~~~~l~~~---~~~~p~ivv~NK~ 313 (549)
.+...+++.+.+++++|+|+|++.. ....+ ..+.+.|... ..++|+++|+||+
T Consensus 225 --------------------gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 225 --------------------GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred --------------------hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 1335667788999999999998643 11111 2233444432 2478999999999
Q ss_pred CCChhhHHhHHHHH-HcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 314 ESPRKGIMQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 314 D~~~~~~~~~~~~~-~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
|+..... ....+. ..+.+++++||+++.|+++|++.+.+.+...
T Consensus 285 DL~~~~e-~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPEAEE-NLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcCCHH-HHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9843221 111121 2346789999999999999999998877643
No 102
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.78 E-value=8.1e-18 Score=167.27 Aligned_cols=162 Identities=25% Similarity=0.354 Sum_probs=121.5
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH-HhHHHHH-HcCCCceEeeccCC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-MQVSEFW-SLGFSPLPISAISG 341 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~-~~~~~~~-~~~~~~v~vSA~~g 341 (549)
+++.+.+..+|++|+|+|++.+++..+..+...+. ++|+++|+||+|+.+... .....++ ..+.+++.+||+++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~ 91 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKG 91 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 45667889999999999999888877766655543 689999999999975432 2222323 33567899999999
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCe
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~ 421 (549)
.|+..+++.+...++................+++++|.+|+||||++|++++.....+++.||+|++...... +.+
T Consensus 92 ~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 167 (287)
T PRK09563 92 QGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----GKG 167 (287)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----CCc
Confidence 9999999988877654322111111123346899999999999999999999888889999999999754332 356
Q ss_pred EEEEeCCCccch
Q 008909 422 FRLIDTAGIRKR 433 (549)
Q Consensus 422 i~l~DTpG~~~~ 433 (549)
+.|+||||+...
T Consensus 168 ~~l~DtPGi~~~ 179 (287)
T PRK09563 168 LELLDTPGILWP 179 (287)
T ss_pred EEEEECCCcCCC
Confidence 899999999654
No 103
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.78 E-value=9.6e-18 Score=152.32 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=103.4
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||++++++.... .....++.+.....+...+ ...+.+|||||+.++..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l-------------- 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------------- 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHH--------------
Confidence 37899999999999999999986532 2223333333333333211 235778999999664321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.++.. ++..+.+ .+.|+++|+||+|+.... .. .....+..... +.+
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~-----~~~~~~~~~~~-~~~ 138 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART-VS-----SRQGQDLAKSY-GIP 138 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce-ec-----HHHHHHHHHHh-CCe
Confidence 223678999999999998754444433 4444443 368999999999987522 11 12222333333 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|+++.+.+
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 104
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.78 E-value=6.5e-18 Score=153.86 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=104.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCcee--eecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.|+++|++|||||||+|+|++..... ....+++|.+.....+.+. +..+.+|||||+..+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~---------------- 65 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI---------------- 65 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH----------------
Confidence 68999999999999999999753211 2223566777666666665 7889999999975321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH-
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~- 320 (549)
......+..+|++++|+|++.+........+..+... ..+|+++++||+|+.....
T Consensus 66 ----------------------~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 66 ----------------------KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred ----------------------HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHH
Confidence 1233557789999999999875544444444444332 2348999999999975421
Q ss_pred ----HhHHHHHH----cCCCceEeeccCCCChhhhHHHHH
Q 008909 321 ----MQVSEFWS----LGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 321 ----~~~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
......+. .+.+++++||++|.|++++++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 11122222 246899999999999999988774
No 105
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.78 E-value=1.2e-17 Score=151.88 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=109.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++... .....++++.+.....+...+ ..++.+|||||+.++.. ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------------~~ 66 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS--------------LI 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH--------------HH
Confidence 689999999999999999998753 345667777777665554322 24689999999855321 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-h--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-E--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|++++-+.+.. .++..+.. . +.|+++|+||+|+....... ..+........ +.+++
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~-----~~~~~~~~~~~-~~~~~ 140 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS-----TEEGEKKAKEL-NAMFI 140 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccC-----HHHHHHHHHHh-CCEEE
Confidence 3357899999999999876444443 35554443 3 48999999999996433222 12222222322 46899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|+++++.++.+.+
T Consensus 141 ~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 141 ETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998754
No 106
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=6.8e-18 Score=158.26 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=104.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.........++++.+.....+...+ ..++.||||||+.++.. ..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS--------------VT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH--------------hh
Confidence 6899999999999999999886533223334444443332232211 24789999999855421 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
..+++.+|++++|+|++++.+.+... |+..+.+. +.|+++|+||+|+...+... ......... ..+.+++
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~-----~~~~~~l~~-~~~~~~~ 141 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVK-----REDGERLAK-EYGVPFM 141 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccC-----HHHHHHHHH-HcCCeEE
Confidence 33578999999999998865444333 55555543 68999999999996543222 112222222 2346899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|+++||.+|.+.+
T Consensus 142 e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 142 ETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998653
No 107
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.78 E-value=7.5e-18 Score=149.74 Aligned_cols=135 Identities=28% Similarity=0.395 Sum_probs=107.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hHHHHH-HcCCCceEeeccCC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAISG 341 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~-~~~~~~v~vSA~~g 341 (549)
+.+.+.+..+|++++|+|++.+....+..+.+++.....++|+++|+||+|+.++... ....++ ..+..++++||+++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 4667889999999999999998888877888887654357899999999999754332 222322 44667899999987
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCe
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~ 421 (549)
.+ +++++|.+|+||||++|++++.....++..+|+|++.....+ + ..
T Consensus 83 ~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~ 129 (141)
T cd01857 83 NA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL---T-PT 129 (141)
T ss_pred Cc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe---C-CC
Confidence 64 579999999999999999999887788889999998765443 2 26
Q ss_pred EEEEeCCCcc
Q 008909 422 FRLIDTAGIR 431 (549)
Q Consensus 422 i~l~DTpG~~ 431 (549)
+.+|||||+.
T Consensus 130 ~~i~DtpG~~ 139 (141)
T cd01857 130 ITLCDCPGLV 139 (141)
T ss_pred EEEEECCCcC
Confidence 8999999983
No 108
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.78 E-value=1.2e-17 Score=157.23 Aligned_cols=170 Identities=25% Similarity=0.310 Sum_probs=119.1
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhh--
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA-- 445 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~-- 445 (549)
...++|+++|.+|+|||||+|++++.. ...+.+.+|+|+....... +.++.||||||+..... . ....+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~-~--~~~~~~~~ 94 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKV-S--KEEKEKWQ 94 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCC-C--chHHHHHH
Confidence 456789999999999999999999864 4556677788876543221 36899999999753210 0 000011
Q ss_pred hHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 446 ~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
......++....++++++|+|++.+.+..+..++..+...++|+++|+||+|+....... .....+.+.+... ..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~---~~~~~i~~~l~~~-~~~ 170 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERK---KQLKKVRKALKFG-DDE 170 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHH---HHHHHHHHHHHhc-CCc
Confidence 111222333345578999999998888777777777877899999999999997643221 2233444555443 468
Q ss_pred EEEEccccCCCHHHHHHHHHhhhC
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSFT 549 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~~ 549 (549)
++++||++|.|++++++.|.++++
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999988763
No 109
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.78 E-value=6e-18 Score=152.92 Aligned_cols=151 Identities=25% Similarity=0.364 Sum_probs=109.2
Q ss_pred cEEEEEEeCCCCCCcchHHHH-HHHHHccCCCeEEEEeccCCCChhhHH-hHH-HHHH-cCCCceEeeccCCCChhhhHH
Q 008909 274 CVIIFLVDGQAGLTAADEEIA-DWLRKNYMDKFIILAVNKCESPRKGIM-QVS-EFWS-LGFSPLPISAISGTGTGELLD 349 (549)
Q Consensus 274 d~illVvD~~~~~~~~~~~~~-~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~~-~~~~-~~~~~v~vSA~~g~gi~~L~~ 349 (549)
|++++|+|++.+.......+. ..+... ++|+++|+||+|+.+.... ... .+.. .+..++++||++|.|+.+|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~--~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEK--GKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcC--CCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999988776665555 344333 7899999999999765422 222 2222 244679999999999999999
Q ss_pred HHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCC
Q 008909 350 LVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAG 429 (549)
Q Consensus 350 ~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG 429 (549)
.+.....................+++++|.+|+||||++|++++.....++..+|+|++.....+ +..+.|+||||
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG 154 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPG 154 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCC
Confidence 88665432111111111123456899999999999999999999887888999999999876543 25689999999
Q ss_pred c
Q 008909 430 I 430 (549)
Q Consensus 430 ~ 430 (549)
+
T Consensus 155 ~ 155 (155)
T cd01849 155 I 155 (155)
T ss_pred C
Confidence 6
No 110
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.77 E-value=1.3e-17 Score=152.40 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=105.2
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++... .....+..+.+.....+... ....+.+|||||+.++.. ..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------~~ 66 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE--------------VR 66 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH--------------HH
Confidence 689999999999999999998753 33444544444433333321 235788999999855321 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH--------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ--------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
...++.+|++|+|+|++++.+.+.. .|+..+.+ .+.|+++|+||+|+....... ..+........+
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~ 141 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS-----EDEGRLWAESKG 141 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC-----HHHHHHHHHHcC
Confidence 2357899999999999986443333 35555543 257899999999987433222 122222333333
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.|++++|++|.+.+
T Consensus 142 -~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 142 -FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998654
No 111
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.77 E-value=5.2e-18 Score=156.46 Aligned_cols=159 Identities=24% Similarity=0.289 Sum_probs=110.5
Q ss_pred EeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHH
Q 008909 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (549)
Q Consensus 376 ~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~ 455 (549)
++|.+|+|||||+|++++... .+...+++|++.........++.++.+|||||+.+.... ........+..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE-------GRGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc-------CCCccHHHHHHH
Confidence 479999999999999998764 567778888887666655433889999999998542210 011122445678
Q ss_pred hcCCcEEEEEEccccC------CHhHHH-HHHHHHH----------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHH
Q 008909 456 RRSDVVALVIEAMACI------TEQDCR-IAERIEQ----------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKL 518 (549)
Q Consensus 456 ~~ad~~llVvD~~~~~------~~~~~~-~l~~l~~----------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l 518 (549)
+.+|++++|+|+++.. ...+.. +...+.. .++|+++|+||+|+....... .......
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~------~~~~~~~ 146 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE------EELVREL 146 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH------HHHHHHH
Confidence 8999999999998762 222322 3333332 378999999999997543221 1101222
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
......+++++||++|.|++++++.+..++
T Consensus 147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 147 ALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred hcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 333456899999999999999999997653
No 112
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.5e-18 Score=154.63 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=119.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+++++|.+++|||-|+.++.... +.....+.+........... ++ .+.+||||+|++++..+.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAit---------- 80 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAIT---------- 80 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhcccc----------
Confidence 45689999999999999999998654 55566665666655544433 43 367899999999876543
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
..+|++|.++++|||++.+.+.+.. +|+.+++.+ ++++++|+||+||...+.... +-.+.++...+
T Consensus 81 ----SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~t------e~~k~~Ae~~~ 150 (222)
T KOG0087|consen 81 ----SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPT------EDGKAFAEKEG 150 (222)
T ss_pred ----chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccch------hhhHhHHHhcC
Confidence 2378999999999999988877765 488888886 789999999999987544432 22344555566
Q ss_pred CCEEEEccccCCCHHHHHHHHHh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
..++++||+.+.||++.|..+..
T Consensus 151 l~f~EtSAl~~tNVe~aF~~~l~ 173 (222)
T KOG0087|consen 151 LFFLETSALDATNVEKAFERVLT 173 (222)
T ss_pred ceEEEecccccccHHHHHHHHHH
Confidence 78999999999999999987654
No 113
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.77 E-value=7.3e-18 Score=152.18 Aligned_cols=155 Identities=35% Similarity=0.447 Sum_probs=117.4
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
.+|+++|++|+|||||+|++.+.......+.+++|.......+.+.+.++.+|||||+.+......
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-------------- 67 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-------------- 67 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH--------------
Confidence 479999999999999999999987667788899999888888888888999999999865432110
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (549)
..........+..+|++++|+|++.+....+...... ..+.|+++|+||+|+......
T Consensus 68 ----------------~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~-- 125 (157)
T cd04164 68 ----------------KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL-- 125 (157)
T ss_pred ----------------HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc--
Confidence 0001234456678999999999987665554443332 247999999999998764432
Q ss_pred HHHHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 324 ~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.....+.+++++||+++.|+.++++.+...+
T Consensus 126 -~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 -LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2233456899999999999999999887643
No 114
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.77 E-value=6.8e-18 Score=160.69 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=103.3
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||++++++..... ..+.+..+.....+ ....+.+|||||+.++..+ ..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~---~~~~l~iwDt~G~e~~~~l--------------~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQW---GPYNISIWDTAGREQFHGL--------------GS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEe---eEEEEEEEeCCCcccchhh--------------HH
Confidence 68999999999999999999876432 23333333322222 3457899999999765321 12
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCC-----------------chhhhHHHH
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNK-----------------NQQTATYYE 511 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~-----------------~~~~~~~~~ 511 (549)
.+++.+|++|+|+|++++.+.+... ++..+.+ .+.|+|||+||+|+.... ...+. .
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~---~ 139 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVT---L 139 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCC---H
Confidence 3578999999999999876666654 4444443 358999999999986510 11111 1
Q ss_pred HHHHHHHhcC-------------CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 512 QDVREKLRAL-------------DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 512 ~~~~~~l~~~-------------~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++........ .+.+|+++||++|.||+++|..+++.
T Consensus 140 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 140 EDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred HHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 2222222222 23689999999999999999999864
No 115
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=1e-17 Score=155.28 Aligned_cols=158 Identities=24% Similarity=0.302 Sum_probs=112.4
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhh-
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL- 446 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~- 446 (549)
....+|+++|.+|+||||++|++++.. ...+.+.+|+|.+...... + ..+.+|||||+..... ...+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~-----~~~~~~~ 86 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKV-----SKEEKEK 86 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccC-----ChhHHHH
Confidence 446799999999999999999999875 4456677888877543322 2 3699999999853210 001111
Q ss_pred ---HHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC-
Q 008909 447 ---SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD- 522 (549)
Q Consensus 447 ---~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~- 522 (549)
.+..+++....+|++++|+|++++++..+..+++.+...++|+++|+||+|+...... +...+++++.+....
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSEL---NKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHH---HHHHHHHHHHHhhccC
Confidence 1112222334578999999999999999988888888889999999999999754222 223455666666543
Q ss_pred CCCEEEEccccCCCHH
Q 008909 523 WAPIVYSTAIAGQSVD 538 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~ 538 (549)
..+++++||++|.|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 2489999999999974
No 116
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.77 E-value=5.1e-18 Score=156.45 Aligned_cols=159 Identities=12% Similarity=0.096 Sum_probs=104.7
Q ss_pred EEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 374 v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
|+++|.+|+|||||++++++.. +.....+.. .+.....+...+ ...+.+|||||+.++..+ ..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------------~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDYDRL--------------RP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCCcE-EeeeeEEEEECCEEEEEEEEECCCCcccchh--------------ch
Confidence 5789999999999999999865 333333333 233333333222 235889999999664321 11
Q ss_pred HHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhh-h------HHHHHHHHHHHhcC
Q 008909 453 RAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQT-A------TYYEQDVREKLRAL 521 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~-~------~~~~~~~~~~l~~~ 521 (549)
..++.+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+........ . ..-.++..+..+..
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 257899999999999986555544 366666654 799999999999865321000 0 00012233344444
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+..+++++||++|.||+++|+.+.+.+
T Consensus 145 ~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 145 GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 445899999999999999999988653
No 117
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.77 E-value=1.5e-17 Score=151.97 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=108.6
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|.+|+|||||++++++.. +.....+.++.+.....+...+ ...+.+|||||+.++.. .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------~ 68 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA--------------I 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH--------------H
Confidence 579999999999999999999875 3344455555554444443322 24688999999865422 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.++++++|+|++++.+.++.. |+..+... +.|+++|+||+|+...+... .++....... .+.++
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~-----~~~~~~~~~~-~~~~~ 142 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP-----TEEAKAFAEK-NGLSF 142 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC-----HHHHHHHHHH-cCCEE
Confidence 123578999999999998765554443 55555443 58999999999987543322 1222233332 34689
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|++++|+.+.+.+
T Consensus 143 ~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999997653
No 118
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.77 E-value=1.5e-17 Score=152.58 Aligned_cols=157 Identities=16% Similarity=0.071 Sum_probs=106.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+++++|.+|+|||||++++++.... ....+..+.+.....+.... ...+.+|||||..++..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 68 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS-------------- 68 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH--------------
Confidence 358999999999999999999986532 22223333333223332222 34789999999855321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
....+++.+|++|+|+|++++.+.++.. |+..++.. +.|+++|+||+|+....... .++....+... +.+
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 142 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS-----YEEGEAFAKEH-GLI 142 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC-----HHHHHHHHHHc-CCE
Confidence 1334678999999999998755544443 55555553 68999999999997543322 12233333333 468
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|.++.+.+
T Consensus 143 ~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987754
No 119
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.77 E-value=5e-18 Score=154.76 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=103.8
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|.+|+|||||+++++..... .. ...|+.+.....+...+ ...+.+|||||+.++..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI-EK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM-------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCCchhheEEEEEEECCEEEEEEEEECCCcccccch--------------
Confidence 37899999999999999999976432 22 22233333333333222 235788999999765321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++-+.++.. |+..+.+ .++|+++|+||+|+........ .......... +.+
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~~ 139 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS-----AEGRALAEEW-GCP 139 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH-----HHHHHHHHHh-CCE
Confidence 112578999999999999865444433 4455544 3699999999999865433221 1111222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|.++++.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 140 FMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998765
No 120
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.77 E-value=7.7e-18 Score=155.35 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=105.8
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+++++|.+|+|||+|+.+++... +.....| |+.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~------------- 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-FPGEYIP-TVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRL------------- 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCcCCC-cceeeeEEEEEE-CCEEEEEEEEECCCchhhhhh-------------
Confidence 378999999999999999999754 3333333 333333323332 33 46889999999664321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchh--h-----hHHHHHHHHHHH
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQ--T-----ATYYEQDVREKL 518 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~--~-----~~~~~~~~~~~l 518 (549)
...+++++|++|+|+|++++-+.+.. .|+..+... +.|++||+||+|+...+... . .....++..+..
T Consensus 66 -~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 66 -RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred -hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 11257899999999999987666665 255555443 68999999999986432100 0 000012223334
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
...+..+++++||++|.|++++|+.+.+.
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 44444589999999999999999999864
No 121
>PRK04213 GTP-binding protein; Provisional
Probab=99.77 E-value=1.6e-17 Score=157.04 Aligned_cols=164 Identities=24% Similarity=0.348 Sum_probs=107.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhh--HH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL--SV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~--~~ 448 (549)
..+|+++|.+|+|||||+|++++.. +.+...+|+|++...... + .+.+|||||+.....+.. ...+.+ ..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~---~--~~~l~Dt~G~~~~~~~~~--~~~~~~~~~~ 80 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDW---G--DFILTDLPGFGFMSGVPK--EVQEKIKDEI 80 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEee---c--ceEEEeCCccccccccCH--HHHHHHHHHH
Confidence 4689999999999999999999875 567778898887543322 2 689999999733211000 001111 01
Q ss_pred HHHHH-HHhcCCcEEEEEEccccC-----------CHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHH
Q 008909 449 NRAFR-AIRRSDVVALVIEAMACI-----------TEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (549)
Q Consensus 449 ~~~~~-~~~~ad~~llVvD~~~~~-----------~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 516 (549)
...++ .+..++++++|+|++... ...+..++..+...++|+++|+||+|+.... . ...+++.+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~----~~~~~~~~ 155 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-D----EVLDEIAE 155 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-H----HHHHHHHH
Confidence 11222 345678999999986421 1234555666777789999999999986543 1 11233333
Q ss_pred HHhcC-C----CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 517 KLRAL-D----WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 517 ~l~~~-~----~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+... . +.+++++||++| |+++++++|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 33310 0 126899999999 9999999998754
No 122
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.1e-18 Score=145.36 Aligned_cols=156 Identities=21% Similarity=0.162 Sum_probs=117.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|..|+||+.|+.++...- +.......+..|.....+.. .+..++++|||+|+++|.+++
T Consensus 7 lfkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit------------ 73 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT------------ 73 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH------------
Confidence 4689999999999999999998763 44444444555554444432 234578999999999987653
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
..+++.||++++|+|++...+..-+ +|+++|+.+ ..-.|+|+||+|+.+.+. +.+++.+.+......-
T Consensus 74 --qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drre------vp~qigeefs~~qdmy 145 (213)
T KOG0095|consen 74 --QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRRE------VPQQIGEEFSEAQDMY 145 (213)
T ss_pred --HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhh------hhHHHHHHHHHhhhhh
Confidence 3478999999999999986555444 477888775 455788999999876433 2456677777666667
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++||+...||+.||..++.-
T Consensus 146 fletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 146 FLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred hhhhcccchhhHHHHHHHHHHH
Confidence 8999999999999999988653
No 123
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=9.5e-18 Score=169.09 Aligned_cols=163 Identities=26% Similarity=0.328 Sum_probs=119.1
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC-ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+.|+|+|.||||||||+|+|++.. ..+++++++|..+..+.+.+.+ ..+.++||||+........
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~---------- 223 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGA---------- 223 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccc----------
Confidence 346899999999999999999999875 5678899999999999988877 8899999999865322111
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC---CCcchH-HHHHHHHHc---cCCCeEEEEecc
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAADE-EIADWLRKN---YMDKFIILAVNK 312 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~---~~~~~~-~~~~~l~~~---~~~~p~ivv~NK 312 (549)
.+...+++.+.+++++|+|+|++.. ....+. .+.+.+... ..++|+++|+||
T Consensus 224 ---------------------gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK 282 (329)
T TIGR02729 224 ---------------------GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNK 282 (329)
T ss_pred ---------------------cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeC
Confidence 1334566788899999999998753 111121 122333221 247899999999
Q ss_pred CCCChhhHHh-HHHHH--HcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 313 CESPRKGIMQ-VSEFW--SLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 313 ~D~~~~~~~~-~~~~~--~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+|+....... ....+ ..+.+++++||+++.|++++++.+.+.+
T Consensus 283 ~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 283 IDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9987643221 11211 2356899999999999999999987654
No 124
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=2.1e-17 Score=151.67 Aligned_cols=162 Identities=33% Similarity=0.480 Sum_probs=117.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|.+|+|||||+|+|++.......+.+++|.......+..++..+.+|||||+.+....... .+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~-~e--------- 71 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEG-IE--------- 71 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhcc-HH---------
Confidence 46899999999999999999998876667778888888877777888888999999999754221110 00
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh--H
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--I 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~--~ 320 (549)
..........+..+|++++|+|+..+.+.....+...+... +.|+++++||+|+.... .
T Consensus 72 -----------------~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 132 (174)
T cd01895 72 -----------------KYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEE--GKALVIVVNKWDLVEKDSKT 132 (174)
T ss_pred -----------------HHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc--CCCEEEEEeccccCCccHHH
Confidence 00011233556789999999999888776665555555544 78999999999987542 1
Q ss_pred H-hHHHHHH--c----CCCceEeeccCCCChhhhHHHHHH
Q 008909 321 M-QVSEFWS--L----GFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 321 ~-~~~~~~~--~----~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
. ....... . ..+++++||+++.|+.++++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 133 MKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred HHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 1 1111111 1 357899999999999999887754
No 125
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.77 E-value=7.4e-18 Score=163.60 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=107.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++.. +.. ...+|+.+.....+.. ++ ..+.||||+|+.++.. +
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~-f~~-~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~------------~-- 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR-FEE-QYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFPA------------M-- 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC-CCC-CCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhhH------------H--
Confidence 68999999999999999999764 322 2333444444434333 33 4678999999966432 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH------------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHH
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK 517 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~------------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 517 (549)
...++..+|++|+|+|++++.+.+... |+.++.. .++|+|||+||+|+....... .+++.+.
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~-----~~ei~~~ 139 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ-----RDEVEQL 139 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC-----HHHHHHH
Confidence 112568999999999999865554443 5555543 268999999999997533322 2334444
Q ss_pred HhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 518 LRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+......+++++||++|.||++||++|.++.
T Consensus 140 ~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 140 VGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4433356799999999999999999998764
No 126
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.77 E-value=2.1e-17 Score=149.62 Aligned_cols=148 Identities=27% Similarity=0.335 Sum_probs=110.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHH-HH-HHcCCCceEeeccCCCCh
Q 008909 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EF-WSLGFSPLPISAISGTGT 344 (549)
Q Consensus 267 ~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~-~~-~~~~~~~v~vSA~~g~gi 344 (549)
.+.+.++|++++|+|++.+....+..+..++... ++|+++|+||+|+.+....... .+ ...+.+++++||+++.|+
T Consensus 7 ~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPELTRSRKLERYVLEL--GKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred HHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC--CCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccH
Confidence 3455669999999999887766666666655443 7899999999998754222111 11 224567899999999999
Q ss_pred hhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEE
Q 008909 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRL 424 (549)
Q Consensus 345 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l 424 (549)
++|++.+...++.. ....+++++|.+|+||||++|++++.....+.+.+|+|++..... -+..+.+
T Consensus 85 ~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~ 150 (156)
T cd01859 85 KILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK----ITSKIYL 150 (156)
T ss_pred HHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE----cCCCEEE
Confidence 99999998877531 234578999999999999999999877677788888887643222 1346899
Q ss_pred EeCCCc
Q 008909 425 IDTAGI 430 (549)
Q Consensus 425 ~DTpG~ 430 (549)
|||||+
T Consensus 151 ~DtpGi 156 (156)
T cd01859 151 LDTPGV 156 (156)
T ss_pred EECcCC
Confidence 999996
No 127
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.77 E-value=3.6e-18 Score=159.66 Aligned_cols=154 Identities=27% Similarity=0.398 Sum_probs=116.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee-----------------eecCCCccccceeeeee--eCCceEEEEEcccccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----------------VVDEPGVTRDRMYGRSF--WGEHEFMLVDTGGVLN 223 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~liDTpG~~~ 223 (549)
.++|+++|+.++|||||+++|++..... .....+.|......... ..++.+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 5689999999999999999998543110 11224666666666666 7789999999999864
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+ ...+.+.+..+|++|+|+|+..++..+..+++..+... +
T Consensus 83 f--------------------------------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~ 122 (188)
T PF00009_consen 83 F--------------------------------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--G 122 (188)
T ss_dssp H--------------------------------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T
T ss_pred e--------------------------------------eecccceecccccceeeeeccccccccccccccccccc--c
Confidence 2 12445678899999999999999999888888888776 8
Q ss_pred CeEEEEeccCCCChhhHHhHHH-----HH-Hc------CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 304 KFIILAVNKCESPRKGIMQVSE-----FW-SL------GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~~~-----~~-~~------~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.|+++|+||+|+.......... +. .. .++++++||.+|.|+.+|++.+.+.++
T Consensus 123 ~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 123 IPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp -SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 8999999999998544332211 11 11 246899999999999999999988765
No 128
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.2e-17 Score=170.81 Aligned_cols=155 Identities=22% Similarity=0.297 Sum_probs=126.2
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC---CceEEEEEcccccccCCCCcchhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
.+.|.|+++||.+.|||||++.|++.+ .......|.|++.....+.++ ...+.++||||+.-|...+.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa-------- 73 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA-------- 73 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh--------
Confidence 458999999999999999999999887 556778899999999988884 47899999999987655332
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
+...-+|+++||+|+.+++.++..+.++.++.. +.|+++++||+|..+
T Consensus 74 ------------------------------RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a--~vP~iVAiNKiDk~~ 121 (509)
T COG0532 74 ------------------------------RGASVTDIAILVVAADDGVMPQTIEAINHAKAA--GVPIVVAINKIDKPE 121 (509)
T ss_pred ------------------------------cCCccccEEEEEEEccCCcchhHHHHHHHHHHC--CCCEEEEEecccCCC
Confidence 556779999999999999999999999988887 999999999999875
Q ss_pred hhHHhH-HHHHHcC---------CCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGIMQV-SEFWSLG---------FSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~~~~-~~~~~~~---------~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
...... .+....| ..++|+||++|.|+++|+..+.-.-+
T Consensus 122 ~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 122 ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 432222 1122222 35799999999999999988765443
No 129
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.77 E-value=5.8e-18 Score=150.68 Aligned_cols=140 Identities=22% Similarity=0.192 Sum_probs=95.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||+|++++... ...+..+ ..+ .+ .+|||||+... .........
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~~~~t~~-------~~~-~~---~~iDt~G~~~~----------~~~~~~~~~ 57 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---LYKKTQA-------VEY-ND---GAIDTPGEYVE----------NRRLYSALI 57 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---cccccee-------EEE-cC---eeecCchhhhh----------hHHHHHHHH
Confidence 689999999999999999998642 1111111 111 11 68999998310 011133334
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccc
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~ 532 (549)
..++++|++++|+|++++.+.....++.. ...|+++|+||+|+.... .. .+...+.++..+..+++++||+
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~-~~-----~~~~~~~~~~~~~~~~~~~Sa~ 128 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEAD-VD-----IERAKELLETAGAEPIFEISSV 128 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcc-cC-----HHHHHHHHHHcCCCcEEEEecC
Confidence 46899999999999998776555444433 245999999999986422 11 1223344444455589999999
Q ss_pred cCCCHHHHHHHHH
Q 008909 533 AGQSVDKYVLYLA 545 (549)
Q Consensus 533 ~g~~v~~L~~~l~ 545 (549)
+|.|+++||++++
T Consensus 129 ~~~gi~~l~~~l~ 141 (142)
T TIGR02528 129 DEQGLEALVDYLN 141 (142)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999885
No 130
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.77 E-value=3.2e-18 Score=146.22 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=112.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|.++|.+|+|||+|+-++.... +....-..+..|+....+... ...++.||||+|+++|..+++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTp----------- 78 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTP----------- 78 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCH-----------
Confidence 4689999999999999999998653 322222234556555444432 234789999999999876532
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
.+||+|.++|+|||++.+.+...+. |++++.-+ ++-.++|+||+|....+.+.. + -.-.++....+
T Consensus 79 ---SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~r-----e-EG~kfAr~h~~ 149 (209)
T KOG0080|consen 79 ---SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDR-----E-EGLKFARKHRC 149 (209)
T ss_pred ---hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccH-----H-HHHHHHHhhCc
Confidence 3789999999999999987777776 55666655 466788999999875443331 1 12334444456
Q ss_pred CEEEEccccCCCHHHHHHHHHh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
-|+++|||+..||...|+.+..
T Consensus 150 LFiE~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 150 LFIECSAKTRENVQCCFEELVE 171 (209)
T ss_pred EEEEcchhhhccHHHHHHHHHH
Confidence 8999999999999999988765
No 131
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.77 E-value=1.7e-17 Score=152.41 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=107.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+++++|.+|+|||||++++++.. +.....+..+.+.....+... ....+.+|||||+.++..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------------- 69 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS-------------- 69 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH--------------
Confidence 4689999999999999999999764 333334444444433333321 234678999999865432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH-------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~ 521 (549)
....+++.+|++++|+|++++.+.+... |...+.. .+.|+++|+||+|+... ... .+++.+.+...
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~-----~~~~~~~~~~~ 143 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-QVS-----TEEAQAWCREN 143 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-ccC-----HHHHHHHHHHC
Confidence 1223678999999999998765444443 4443332 35799999999998632 211 23344455555
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+..+++++||++|.|+.++|+.+.+.
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 55689999999999999999999864
No 132
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=1.7e-17 Score=151.79 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=103.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+|||||++++.+.... ...+.+..+. ...... ....++.+|||||..++. ...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~--------------~~~ 64 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDR--------------ANL 64 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhh--------------HHH
Confidence 6899999999999999999986532 2233322221 111111 234578999999985421 122
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+.+.......+.....+.+.+.. ..+++
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 142 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE--IETCV 142 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc--ccEEE
Confidence 3356899999999999987666653 355555543 68999999999997654321111111112222221 13799
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|++++|+.+.+..
T Consensus 143 e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 143 ECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EeccccccCHHHHHHHHHHHh
Confidence 999999999999999988753
No 133
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=1.6e-17 Score=156.72 Aligned_cols=156 Identities=19% Similarity=0.142 Sum_probs=107.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++.. +.....++.+.+.....+...+ ...+.||||||+..+..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------------- 70 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-------------- 70 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH--------------
Confidence 4689999999999999999999764 3333334443343333333222 24688999999865432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
....+++.+|++++|+|++++.+.+... |+..+... ..|++||+||+|+....... .....+.....+ .++
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~-----~~~~~~~~~~~~-~~~ 144 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE-----TEDAYKFAGQMG-ISL 144 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC-----HHHHHHHHHHcC-CEE
Confidence 1233678999999999999865544443 55555543 58999999999987643322 122223333333 689
Q ss_pred EEEccccCCCHHHHHHHHHhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++||++|.||+++|++|.+.
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 145 FETSAKENINVEEMFNCITEL 165 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHH
Confidence 999999999999999998764
No 134
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.76 E-value=1.5e-17 Score=179.00 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=119.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.+.+.|+++|++++|||||++++.+.. +.....+|+|.+.....+...++.++.+|||||+.+|..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~------------- 150 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS------------- 150 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh-------------
Confidence 456799999999999999999999865 444556788888665555543445899999999987642
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHH--H-hcC-CCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK--L-RAL-DWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~--l-~~~-~~~ 524 (549)
...+.++.+|++++|||++++...+....+..+...++|+++++||+|+...... .+...+.+. . ... +..
T Consensus 151 -~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e----~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 151 -MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPD----RVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred -HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHH----HHHHHHHHhhhhHHhcCCCc
Confidence 1234678999999999999988888888888888889999999999998653211 122222211 1 111 124
Q ss_pred CEEEEccccCCCHHHHHHHHHh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
+++++||++|.|+++|++++..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 7999999999999999998853
No 135
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.76 E-value=1.5e-17 Score=155.40 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=105.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC--CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++.. +.....+.+..+.. ......+ ...+.+|||||+.++...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK-FPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRL-------------- 65 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc-CCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHH--------------
Confidence 68999999999999999999865 33333333333332 2333222 236889999998654221
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH--HHHHHHH--hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~--~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+......... ....+..+.....+..++
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~~~~ 144 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGAFAY 144 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCCcEE
Confidence 112578999999999999876665553 5444443 36899999999998653211000 002233344444444489
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.||+++|..+.+.+
T Consensus 145 ~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987653
No 136
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.76 E-value=2.8e-17 Score=149.93 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=106.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcC-CCeeecCCCCceeeeeEEEEecc--CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGE-DRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~-~~~~~~~~~gtt~~~~~~~~~~~--~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
+++++|.+|+|||||++++.+. ..+.....+++..+.....+... ....+.+|||||+..+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------- 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD-------------- 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH--------------
Confidence 6899999999999999999864 23433444444444433333322 235799999999854321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
....+++.+|++++|+|++++.+.... .|+..+... +.|+++|+||+|+........ ... +.+....+.++
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-----~~~-~~~~~~~~~~~ 141 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTD-----AQA-QAFAQANQLKF 141 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCH-----HHH-HHHHHHcCCeE
Confidence 123357899999999999876444433 355555554 589999999999865433221 111 12222334689
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|++++|+.+++.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCCChHHHHHHHHHHh
Confidence 9999999999999999998865
No 137
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.76 E-value=9.6e-18 Score=156.08 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=100.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEe--ccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT--GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~--~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+|+++|.+|+||||+++++++..... ..|..+.+.....+. ...+..+.+|||||+.++..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP------------- 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH-------------
Confidence 3579999999999999999998765432 233222222222222 22356899999999865421
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHH----HhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh----
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIE----QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR---- 519 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~---- 519 (549)
....+++++|++++|+|++++.+.+... ++..+. ..++|+++|+||+|+...... ..+...+.
T Consensus 68 -~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~-------~~~~~~~~~~~~ 139 (183)
T cd04152 68 -LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV-------SEVEKLLALHEL 139 (183)
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH-------HHHHHHhCcccc
Confidence 1223578999999999998753333222 333332 347999999999998643221 11222221
Q ss_pred -cCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 520 -ALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 520 -~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.....+++++||++|.|+++|+++|.+.+
T Consensus 140 ~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 140 SASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 11224689999999999999999988653
No 138
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.76 E-value=8.2e-18 Score=153.92 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=99.3
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCe---eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRT---IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~---~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
+|+++|.+|+|||||++++++.... .......+|+......+.+ ++..+.+|||||+.++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-------------- 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRS-------------- 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHH--------------
Confidence 4789999999999999999864211 0011112233322233433 567899999999965421
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc--CC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--LD 522 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~--~~ 522 (549)
.....++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+....... +....+...... ..
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~---~~~~~~~~~~~~~~~~ 142 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVE---EIKEVFQDKAEEIGRR 142 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHH---HHHHHhccccccccCC
Confidence 223467999999999999874322222 23333332 378999999999986542211 112222221111 12
Q ss_pred CCCEEEEccccCCCHHHHHHHHHh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
..+++++||++|.|+++++++|.+
T Consensus 143 ~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 143 DCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ceEEEEeeCCCCcCHHHHHHHHhc
Confidence 357999999999999999999864
No 139
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.76 E-value=2.7e-17 Score=151.17 Aligned_cols=158 Identities=27% Similarity=0.307 Sum_probs=116.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hHHHHH-HcCCCceEeeccCC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAISG 341 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~-~~~~~~v~vSA~~g 341 (549)
+++...+.++|++++|+|++.+....+..+...+ .++|+++|+||+|+.+.... ....++ ..+..++.+||+++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 86 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSG 86 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 4567888999999999999887766555544433 26789999999999754322 222222 23456799999999
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCe
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~ 421 (549)
.|++++...+...+....... .........+++++|.+|+||||++|++++.....+...+|+|++.....+. ..
T Consensus 87 ~gi~~L~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~----~~ 161 (171)
T cd01856 87 KGVKKLLKAAKKLLKDIEKLK-AKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS----PG 161 (171)
T ss_pred ccHHHHHHHHHHHHHHHhhhh-hcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec----CC
Confidence 999999999888765322111 1112233468999999999999999999998777888899999887665442 56
Q ss_pred EEEEeCCCc
Q 008909 422 FRLIDTAGI 430 (549)
Q Consensus 422 i~l~DTpG~ 430 (549)
+.++||||+
T Consensus 162 ~~~iDtpG~ 170 (171)
T cd01856 162 IYLLDTPGI 170 (171)
T ss_pred EEEEECCCC
Confidence 899999997
No 140
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=2e-17 Score=157.30 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=107.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+|+++|.+|+|||||++++++... .....++++.+.....+...++ ..+.+|||||+.++..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~-~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------------- 67 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF-AEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS-------------- 67 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH--------------
Confidence 5799999999999999999998653 2333344455554444433233 4688999999865421
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++-+.+... |+..+.+. ..|++||+||+|+....... .+...+..+..+ .
T Consensus 68 ~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~-----~~~~~~~~~~~~-~ 141 (211)
T cd04111 68 ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT-----REEAEKLAKDLG-M 141 (211)
T ss_pred HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC-----HHHHHHHHHHhC-C
Confidence 1233679999999999999865444433 55555442 46789999999987643322 112223333333 6
Q ss_pred CEEEEccccCCCHHHHHHHHHhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++++||++|.||+++|++|++.
T Consensus 142 ~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 142 KYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999874
No 141
>PTZ00369 Ras-like protein; Provisional
Probab=99.76 E-value=1.7e-17 Score=155.31 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=103.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++.... ....+ |+.+.....+...+ ...+.+|||||+.++...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l------------- 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDP-TIEDSYRKQCVIDEETCLLDILDTAGQEEYSAM------------- 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCC-chhhEEEEEEEECCEEEEEEEEeCCCCccchhh-------------
Confidence 358999999999999999999976432 12222 22222233333222 345789999999765321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+... |+..+.+. +.|+++|+||+|+........ ....+..... +.
T Consensus 70 -~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~-----~~~~~~~~~~-~~ 142 (189)
T PTZ00369 70 -RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST-----GEGQELAKSF-GI 142 (189)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH-----HHHHHHHHHh-CC
Confidence 223678999999999999865544443 44444432 689999999999865433221 1112222222 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|.+|.+.+
T Consensus 143 ~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 143 PFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997643
No 142
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.76 E-value=1.3e-17 Score=153.71 Aligned_cols=150 Identities=26% Similarity=0.343 Sum_probs=101.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++.+.......+..|.. ...+.. ++..+.+|||||+.++.. .
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~----~~~~~~-~~~~l~l~D~~G~~~~~~--------------~ 74 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEY-EGYKLNIWDVGGQKTLRP--------------Y 74 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEE-CCEEEEEEECCCCHHHHH--------------H
Confidence 468999999999999999999986432222222221 122222 467899999999965321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHH----HhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc----C
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIE----QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----L 521 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~----~ 521 (549)
...+++.+|++++|+|++++.+.... .++..+. ..+.|+++|+||+|+..... .+.+.+.+.. .
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~ 147 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS-------EEEIREALELDKISS 147 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC-------HHHHHHHhCccccCC
Confidence 23467899999999999886333332 2333332 24789999999999975432 1222333321 2
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
...+++++||++|.|++++|+++..
T Consensus 148 ~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CceEEEeccCCCCcCHHHHHHHHhc
Confidence 3457999999999999999999863
No 143
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.1e-17 Score=172.12 Aligned_cols=165 Identities=23% Similarity=0.220 Sum_probs=119.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC-ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
....|+|+|.||||||||+|+|++.+ ..++++|++|+....+.+.+.+ ..+.++||||+........
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~----------- 225 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA----------- 225 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh-----------
Confidence 35689999999999999999999876 5889999999999999988875 5699999999965322110
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC---CC-cchHHHHHHHHHc---cCCCeEEEEeccC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LT-AADEEIADWLRKN---YMDKFIILAVNKC 313 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~---~~-~~~~~~~~~l~~~---~~~~p~ivv~NK~ 313 (549)
.+...+++++..++++++|+|++.. .. .....+.+.+... +.++|+++|+||+
T Consensus 226 --------------------~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 226 --------------------GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred --------------------hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 1234556788999999999997621 11 1112233333332 2368999999999
Q ss_pred CCChhhHH-hHHH-HHH-cC--CCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 314 ESPRKGIM-QVSE-FWS-LG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 314 D~~~~~~~-~~~~-~~~-~~--~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
|+...... .... +.. .+ .+++++||+++.|+.+|++.+...+.+.
T Consensus 286 Dl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 286 DLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred ccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 98754322 1111 212 22 3689999999999999999999888653
No 144
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2.9e-17 Score=157.99 Aligned_cols=162 Identities=28% Similarity=0.406 Sum_probs=121.1
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
...|+|+|+|+||||||||++++++.+ +.+.++|+||+....|.+..++.++++|||||+.+.+-...
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er----------- 233 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER----------- 233 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh-----------
Confidence 468999999999999999999999987 77899999999999999999999999999999987543221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhh-ccEEEEEEeCCC--CCCcchH-HHHHHHHHccCCCeEEEEeccCCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVDGQA--GLTAADE-EIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~-~d~illVvD~~~--~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
+.|++++..++.. .++|+|++|.+. +.+...+ .+++.++..+ +.|+++|+||+|..
T Consensus 234 -------------------N~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-~~p~v~V~nK~D~~ 293 (346)
T COG1084 234 -------------------NEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-KAPIVVVINKIDIA 293 (346)
T ss_pred -------------------cHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-CCCeEEEEeccccc
Confidence 2355666666665 789999999865 4444433 3455666654 48999999999988
Q ss_pred hhhHHhHHH--HHHcCC-CceEeeccCCCChhhhHHHHHHH
Q 008909 317 RKGIMQVSE--FWSLGF-SPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 317 ~~~~~~~~~--~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
..+...... ....+. ....+++..+.+++.+...+...
T Consensus 294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred chhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 544333222 222232 35678888888888776666544
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.76 E-value=2.4e-17 Score=151.19 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=100.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++...... ...|+++.+.. .+. ..+..+.+|||||+.++.. .
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~--~~~-~~~~~~~l~Dt~G~~~~~~--------------~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVE--TVT-YKNVKFNVWDVGGQDKIRP--------------L 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceE--EEE-ECCEEEEEEECCCCHHHHH--------------H
Confidence 358999999999999999999865432 23343333332 222 2567899999999965321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc--C--
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--L-- 521 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~--~-- 521 (549)
...+++.+|++|+|+|+++..+..+ ..++..+.. .++|++||+||+|+..... .+++.+.+.. .
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~ 142 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK-------PHEIQEKLGLTRIRD 142 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC-------HHHHHHHcCCCccCC
Confidence 2236799999999999998543322 233433322 3589999999999864321 1223333221 1
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
...+++++||++|.|++++|.+|.+
T Consensus 143 ~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 143 RNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1236899999999999999999864
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=1.5e-17 Score=152.14 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=108.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC---CceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
|.|+++|++|+|||||+|+|++... .....+++|.+.....+... +..+.+|||||+..+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-------------- 65 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------------- 65 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH--------------
Confidence 5799999999999999999997653 23344566766655555554 67899999999754211
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
.....+..+|++++|+|++.+........+.++... +.|+++|+||+|+.....
T Consensus 66 ------------------------~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~--~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 66 ------------------------MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA--NVPFIVALNKIDKPNANP 119 (168)
T ss_pred ------------------------HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEEceecccccH
Confidence 122456789999999999876655555566666554 789999999999874321
Q ss_pred H---hHH-HHH-------HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 M---QVS-EFW-------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ~---~~~-~~~-------~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. ... .+. ...++++++||++|.|+.++++++.+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 1 111 111 12357899999999999999999876543
No 147
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.76 E-value=1.2e-17 Score=152.80 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=103.2
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||+++++... +.....+....+.....+.. .....+.+|||||+.++... .
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------------~ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--------------R 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc--------------c
Confidence 68999999999999999998653 22222332223332222222 12357899999999765321 1
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
...++.+|++|+|+|++++.+.+... |+..+... ++|+++|+||+|+.... .. ....+ +......++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-~~------~~~~~-~~~~~~~~~~e 138 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK-VK------AKQIT-FHRKKNLQYYE 138 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc-CC------HHHHH-HHHHcCCEEEE
Confidence 12568999999999999865555543 55555544 69999999999997322 11 11112 22234568999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++|.|++++|++|.+.+
T Consensus 139 ~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 139 ISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EeCCCCCChHHHHHHHHHHH
Confidence 99999999999999998643
No 148
>PLN03110 Rab GTPase; Provisional
Probab=99.76 E-value=1.9e-17 Score=158.19 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=110.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++.. +.....++...+.....+...+ ...+.||||||+.++..
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~-------------- 76 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-------------- 76 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH--------------
Confidence 4689999999999999999999865 3334445555555444444322 34789999999966432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
....+++.+|++|+|+|+++..+.+... |+..+... +.|+++|+||+|+........ +. ...+....+.+
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~-----~~-~~~l~~~~~~~ 150 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE-----ED-GQALAEKEGLS 150 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH-----HH-HHHHHHHcCCE
Confidence 1233678999999999998865555543 55555553 689999999999865433221 11 12233334578
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|+.+.+.+
T Consensus 151 ~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 151 FLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997643
No 149
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.76 E-value=1.2e-17 Score=159.81 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=106.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+++++... +.....+....+.....+... ....+.+|||||+.++..+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~-f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------ 78 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------------ 78 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC-CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh------------
Confidence 35689999999999999999988654 333333333333333333222 2358899999999765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++|+|+|++++.+.+... |+..+... +.|+++|+||+|+.... .. .+.+ + +....+.+
T Consensus 79 --~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~-----~~~~-~-~~~~~~~~ 148 (219)
T PLN03071 79 --RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-----AKQV-T-FHRKKNLQ 148 (219)
T ss_pred --hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhcc-CC-----HHHH-H-HHHhcCCE
Confidence 122578999999999999876555543 55555543 68999999999985321 11 1112 2 22234468
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++||++|.||+++|.+|.+.
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999864
No 150
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.76 E-value=1.5e-17 Score=180.05 Aligned_cols=158 Identities=23% Similarity=0.228 Sum_probs=122.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCC--CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.|+++|++++|||||++++++.. .+......|+|++.....+.+ ++..+.+|||||+.+| ...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f--------------~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKF--------------ISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHH--------------HHH
Confidence 68999999999999999999743 222334568898877666664 4578999999999654 344
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC---CCCE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD---WAPI 526 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~---~~~~ 526 (549)
+...+.++|++++|||++++...+..+.+..+...++| ++||+||+|+.+.... +...+++.+.+.... +.++
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~---~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEI---KRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHH---HHHHHHHHHHHHHhCCCCCCcE
Confidence 56678999999999999998888888888888888898 9999999999754321 223344555554432 4689
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|++++++.+.+++
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHH
Confidence 9999999999999999887653
No 151
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.76 E-value=3.1e-17 Score=149.22 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=105.2
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+|||||++++++... .....+..+.+.....+...+ ...+.+|||||+.++.. ..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------------~~ 66 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS--------------VT 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH--------------hH
Confidence 689999999999999999997653 223333333333333333222 24688999999965421 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+....... .+.........+ .+++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-----~~~~~~~~~~~~-~~~~ 140 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT-----FLEASRFAQENG-LLFL 140 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC-----HHHHHHHHHHcC-CEEE
Confidence 34578999999999999865554433 4444443 378999999999997643322 122333333333 6899
Q ss_pred EEccccCCCHHHHHHHHHhh
Q 008909 528 YSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~ 547 (549)
++||++|.|++++|+++++-
T Consensus 141 ~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 141 ETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999864
No 152
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.76 E-value=2e-17 Score=150.44 Aligned_cols=148 Identities=22% Similarity=0.222 Sum_probs=97.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCee--ecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~--~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++..... ..+..|.+.. .+. ..+..+.+|||||+.++.. .
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~-~~~~~~~l~Dt~G~~~~~~--------------~ 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFE-KGNLSFTAFDMSGQGKYRG--------------L 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEE-ECCEEEEEEECCCCHhhHH--------------H
Confidence 47899999999999999999864222 2233333222 222 3567899999999965432 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh--c-
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR--A- 520 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~--~- 520 (549)
...+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+...... ..+.+.+. .
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-------~~~~~~l~~~~~ 134 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA-------VKITQLLGLENI 134 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH-------HHHHHHhCCccc
Confidence 22357899999999999986443222 23333322 36999999999998654221 11112221 1
Q ss_pred -CCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 521 -LDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 521 -~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
....+++++||++|.|++++|++|..
T Consensus 135 ~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 135 KDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 11235899999999999999999864
No 153
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=2.7e-17 Score=178.45 Aligned_cols=159 Identities=21% Similarity=0.261 Sum_probs=124.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCC--CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.|+++|+.++|||||+++++|.+ .+......|+|++.....+...++..+.+|||||+++| ...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f--------------i~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF--------------LSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH--------------HHH
Confidence 47899999999999999999743 23334456889887666665556778999999999654 345
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC--CCCEE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD--WAPIV 527 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i 527 (549)
+...+.++|++++|||+.+++..++.+.+..+...++| +|||+||+|+.+... .+...+++.+.+...+ ..+++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~---~~~v~~ei~~~l~~~~~~~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR---IAEVRRQVKAVLREYGFAEAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHH---HHHHHHHHHHHHHhcCCCCCcEE
Confidence 66778999999999999999999999998888888887 578999999975322 2233455666665543 36899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|+++|++.|.++.
T Consensus 145 ~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 145 VTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred EEeCCCCCCCHHHHHHHHHhh
Confidence 999999999999999998653
No 154
>PLN03118 Rab family protein; Provisional
Probab=99.76 E-value=2e-17 Score=157.59 Aligned_cols=156 Identities=18% Similarity=0.135 Sum_probs=105.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++..... ..+.++.+.....+...+ ...+.||||||+.++..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------------- 77 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVED--LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT-------------- 77 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH--------------
Confidence 4689999999999999999999865322 223333333333333222 34789999999976532
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH--HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~--~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
....+++.+|++++|+|++++.+.+... |...+.. .+.|+++|+||+|+........ +........ .+
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~-----~~~~~~~~~-~~ 151 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR-----EEGMALAKE-HG 151 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH-----HHHHHHHHH-cC
Confidence 1234678999999999999865555543 3333332 2578999999999975443221 112222222 34
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.|++++|++|.+.+
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998654
No 155
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=3.4e-17 Score=162.44 Aligned_cols=165 Identities=21% Similarity=0.298 Sum_probs=127.2
Q ss_pred hcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhh
Q 008909 366 EEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (549)
Q Consensus 366 ~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~ 445 (549)
+.....+.|+++|++|+|||||+|.+++.. ..+.+..++|-|+....+.+.+|.++.+.||-|+.+.- ++.--
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L------P~~LV 259 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL------PHPLV 259 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccC------ChHHH
Confidence 344567899999999999999999999775 55677888999999888888889999999999997732 23344
Q ss_pred hHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHH-HHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC
Q 008909 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIA-ERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (549)
Q Consensus 446 ~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l-~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~ 521 (549)
..++.++.....||++++|||++++...+..... ..+.+ ..+|+|+|+||+|++..... . ..+...
T Consensus 260 ~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~------~----~~~~~~ 329 (411)
T COG2262 260 EAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI------L----AELERG 329 (411)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh------h----hhhhhc
Confidence 5678889999999999999999998554444433 23333 46899999999998765320 1 111212
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
. ...+++||++|.|++.|.+.|.+.+
T Consensus 330 ~-~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 330 S-PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred C-CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 1 2589999999999999999987754
No 156
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.75 E-value=4.7e-17 Score=148.24 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=106.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+||||+++++++... .....+..+.+.....+...+ ...+.+|||||+.++.. ..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------------~~ 66 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS--------------IT 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH--------------HH
Confidence 689999999999999999998753 334444444444333343322 24788999999855321 22
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|++++.+.+... |+..+.. .++|+++|+||+|+....... .+...+..... +.+++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~-----~~~~~~~~~~~-~~~~~ 140 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS-----REEAEAFAEEH-GLPFF 140 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC-----HHHHHHHHHHc-CCeEE
Confidence 33578999999999998865554433 5555554 368999999999987543222 12222333333 36799
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|++++++.|.+.+
T Consensus 141 e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 141 ETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 157
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=1.3e-17 Score=153.15 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=103.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-ecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhh
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
...+++++|.+|+|||||++++++.. +. ....|.+..+.....+.. ++ ..+.+|||+|...+...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~---------- 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILL---------- 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccccc----------
Confidence 46789999999999999999999875 33 233333322222222332 33 46789999998664321
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+........ ....+.....+..
T Consensus 71 ----~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~-----~~~~~~~~~~~~~ 141 (169)
T cd01892 71 ----NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYE-----VQPDEFCRKLGLP 141 (169)
T ss_pred ----chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccc-----cCHHHHHHHcCCC
Confidence 12257999999999999876433332 33443322 3689999999999865432210 1111222223333
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.++++||++|.|++++|+.+.+++
T Consensus 142 ~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCEEEEeccCccHHHHHHHHHHHh
Confidence 579999999999999999998753
No 158
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.75 E-value=4.3e-17 Score=148.06 Aligned_cols=148 Identities=18% Similarity=0.136 Sum_probs=97.2
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||++++...... ...|++..+.. .+. ....++.+|||||+.++.. ...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~--~~~-~~~~~~~l~D~~G~~~~~~--------------~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVE-YKNISFTVWDVGGQDKIRP--------------LWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceE--EEE-ECCEEEEEEECCCCHhHHH--------------HHH
Confidence 6899999999999999999755432 23443333221 222 2457899999999965321 123
Q ss_pred HHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc----CCC
Q 008909 453 RAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----LDW 523 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~----~~~ 523 (549)
.+++++|++++|+|+++..+... ..++..+.. ...|++||+||+|+...... .++.+.+.. ...
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~i~~~~~~~~~~~~~ 135 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA-------AEVTDKLGLHSLRNRN 135 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH-------HHHHHHhCccccCCCC
Confidence 46799999999999987533222 223433322 25899999999998643221 122222221 122
Q ss_pred CCEEEEccccCCCHHHHHHHHHh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
..++++||++|.||+++|++|..
T Consensus 136 ~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 136 WYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEEeeCCCCCCHHHHHHHHhc
Confidence 35779999999999999999864
No 159
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.75 E-value=4.5e-17 Score=148.31 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=104.2
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCee-ecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|.+|+|||+|+|++++..... ..+..|.........+. ..+..+.+|||||+.++.. .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~~~~--------------~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQERYRS--------------L 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHHHHH--------------H
Confidence 478999999999999999999876433 22222322222222222 1245789999999855321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.+|++++|+|++++-+.+. ..++..+... +.|+++|+||+|+....... ...........+ .++
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-----~~~~~~~~~~~~-~~~ 140 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS-----TEEAQEYADENG-LLF 140 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC-----HHHHHHHHHHcC-CEE
Confidence 2235789999999999987543333 3355555544 47899999999987543222 122233344333 689
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|+.+++++|.+.+
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 141 FETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 160
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.75 E-value=1.4e-17 Score=175.21 Aligned_cols=154 Identities=21% Similarity=0.307 Sum_probs=115.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeec------------------------------CCCCceeeeeEEEEeccCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEG 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~~ 419 (549)
...+|+++|++++|||||+++|++....... -.+|+|++.....+.. ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 3468999999999999999999854322211 1569999998877764 67
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc--cCCHhHHHHHHHHHHhCC-cEEEEEecc
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA--CITEQDCRIAERIEQEGK-GCLIVVNKW 496 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~--~~~~~~~~~l~~l~~~~~-p~ivv~NK~ 496 (549)
.++.+|||||+.++. ..+...++.+|++++|+|+++ ++..+....+..+...+. |+++|+||+
T Consensus 84 ~~i~liDtpG~~~~~--------------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 84 YYFTIVDCPGHRDFV--------------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred eEEEEEECCCcccch--------------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 899999999996642 223445789999999999998 777777777777777775 589999999
Q ss_pred cCCCCCchhhhHHHHHHHHHHHhcCCC----CCEEEEccccCCCHHH
Q 008909 497 DTIPNKNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVDK 539 (549)
Q Consensus 497 Dl~~~~~~~~~~~~~~~~~~~l~~~~~----~~~i~iSA~~g~~v~~ 539 (549)
|+..... .......+++.+.++..++ .+++++||++|.|+++
T Consensus 150 Dl~~~~~-~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 150 DAVNYDE-KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred ccccccH-HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 9975221 1222334556666655443 5799999999999987
No 161
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.75 E-value=2.5e-17 Score=181.30 Aligned_cols=158 Identities=22% Similarity=0.306 Sum_probs=120.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.+.+.|+++|+.++|||||+++|.+.. +.....+|+|.+.....+. +++..+.||||||+.+|..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F~~------------- 352 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVE-TNGGKITFLDTPGHEAFTA------------- 352 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEE-ECCEEEEEEECCCCccchh-------------
Confidence 467899999999999999999998765 3345566778776555554 3578899999999987632
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHH--HH-hcC-CCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE--KL-RAL-DWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~--~l-~~~-~~~ 524 (549)
...+.++.+|++|+|||++++...+....+..+...++|+|||+||+|+....... +..++.+ .+ ... +..
T Consensus 353 -m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~----V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 353 -MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDR----VKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred -HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHH----HHHHHHHhcccHHHhCCCc
Confidence 12346789999999999999988899998988888999999999999996532211 1222221 11 111 236
Q ss_pred CEEEEccccCCCHHHHHHHHHh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
+++++||++|.||++|+++|..
T Consensus 428 p~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhh
Confidence 8999999999999999999863
No 162
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.75 E-value=1.8e-17 Score=156.77 Aligned_cols=176 Identities=24% Similarity=0.351 Sum_probs=132.1
Q ss_pred ccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 368 ~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
..+..+|+++|.||+|||||.|.++|.++..++..+.||+..+...+.. +..++.++||||+...+... +.+.+...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r--~~~l~~s~ 145 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHR--RHHLMMSV 145 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhh--hHHHHHHh
Confidence 3456799999999999999999999999999999999999999988874 56789999999997654422 12333334
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh-CCcEEEEEecccCCCCCchhhh----------HHHHHHHHH
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-GKGCLIVVNKWDTIPNKNQQTA----------TYYEQDVRE 516 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~-~~p~ivv~NK~Dl~~~~~~~~~----------~~~~~~~~~ 516 (549)
+...+.++..||++++|+|++++-+.-.-+++..+..+ ++|-|+|.||+|....+..-.. ....-++++
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 45667788999999999999975455556677888876 6899999999998765321100 000112334
Q ss_pred HHhcCC----------C---CCEEEEccccCCCHHHHHHHHHh
Q 008909 517 KLRALD----------W---APIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 517 ~l~~~~----------~---~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
.+.... | ..+|++||++|.||++|.++|..
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHh
Confidence 443322 3 35899999999999999999865
No 163
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.75 E-value=3.2e-17 Score=148.63 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=101.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||+.+++..... .. .+.+.... ...+.. ++ ..+.+|||+|+.+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~-~~-~~~~~~~~-~~~i~~-~~~~~~l~i~D~~g~~~~----------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV-QL-ESPEGGRF-KKEVLV-DGQSHLLLIRDEGGAPDA----------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CC-CCCCccce-EEEEEE-CCEEEEEEEEECCCCCch-----------------
Confidence 6899999999999999998875422 21 22222222 223332 44 45889999999431
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
.+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+.......+.. +...+..++....+
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~---~~~~~~~~~~~~~~ 135 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDD---ARARQLCADMKRCS 135 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCH---HHHHHHHHHhCCCc
Confidence 246789999999999998777774 466666543 47999999999985322222211 12222333344468
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++|||++|.||+++|..+++.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999999864
No 164
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=2.7e-17 Score=149.20 Aligned_cols=152 Identities=19% Similarity=0.146 Sum_probs=96.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+++|||+|++++....... ..|.+..+.. .+.. .+.++.+|||||+.++.. ...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~~~--~~~~-~~~~~~i~Dt~G~~~~~~--------------~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFNVE--TVTY-KNLKFQVWDLGGQTSIRP--------------YWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcCeE--EEEE-CCEEEEEEECCCCHHHHH--------------HHH
Confidence 47899999999999999997654332 2232222221 2222 457899999999965421 123
Q ss_pred HHHhcCCcEEEEEEccccCCHhH-HHHH-HHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 453 RAIRRSDVVALVIEAMACITEQD-CRIA-ERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~-~~~l-~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
.+++.+|++++|+|++++.+... ...+ ..++. .++|+++|+||+|+...... .++...+........+.+++
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcEEEE
Confidence 46789999999999987432221 2222 22332 37899999999998653211 11111111100011123699
Q ss_pred EEccccCCCHHHHHHHHHh
Q 008909 528 YSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~ 546 (549)
++||++|.|++++|++|++
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999999975
No 165
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=6.3e-17 Score=147.25 Aligned_cols=160 Identities=34% Similarity=0.474 Sum_probs=115.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.+|+|||||+|+|++.........+.++...........+..+.+|||||+........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~------------- 69 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG------------- 69 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH-------------
Confidence 4689999999999999999999987666666667776666655556667899999999865322110
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCCh-h-hH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-K-GI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~-~-~~ 320 (549)
..+.+.....+..+|++++|+|++.+.......+...+... +.|+++++||+|+.. . ..
T Consensus 70 -----------------~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 130 (168)
T cd04163 70 -----------------ERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDL 130 (168)
T ss_pred -----------------HHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHHH
Confidence 01223344667889999999999987666666666666554 689999999999873 2 22
Q ss_pred HhHHHHH-Hc--CCCceEeeccCCCChhhhHHHHHHH
Q 008909 321 MQVSEFW-SL--GFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 321 ~~~~~~~-~~--~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
....... .. ..+++++|++++.|++++++.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 131 LPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 2222222 22 2478999999999999999988654
No 166
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=159.04 Aligned_cols=161 Identities=22% Similarity=0.276 Sum_probs=122.3
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce-EEEEEcccccccCCCCcchhhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE-FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+.|+++|.||+|||||+|+|...+ +.+.++++||..+..+.+.+++.. +.+.|.||+.........
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG--------- 263 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG--------- 263 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCc---------
Confidence 456889999999999999999999876 689999999999999999887754 999999999886654432
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC---CcchHHH----HHHHHHccCCCeEEEEecc
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL---TAADEEI----ADWLRKNYMDKFIILAVNK 312 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~---~~~~~~~----~~~l~~~~~~~p~ivv~NK 312 (549)
+...+++.+.+|+.++||+|.+.+. ..+.... ++.+.+.+.++|.++|+||
T Consensus 264 ----------------------lG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNK 321 (366)
T KOG1489|consen 264 ----------------------LGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANK 321 (366)
T ss_pred ----------------------ccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEec
Confidence 3457889999999999999998752 1222221 2334455678999999999
Q ss_pred CCCChhhHHhHHHHH--HcCCCceEeeccCCCChhhhHHHHHH
Q 008909 313 CESPRKGIMQVSEFW--SLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 313 ~D~~~~~~~~~~~~~--~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
+|+.+.+......+. -.+..++++||++++|+.+|++.+..
T Consensus 322 iD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 322 IDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 998643222111111 12334899999999999999887754
No 167
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.2e-17 Score=140.54 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=111.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
++.++|.+.+||++++.++++.. +.........++.....+-.. ...++++|||+|+++...+ +
T Consensus 23 KlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti--------------T 87 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI--------------T 87 (193)
T ss_pred eEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH--------------H
Confidence 78999999999999999999864 555555555666554433222 2457999999999775433 2
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
-.++|+|+++|+++|+++.-+....+ |..+|+-+ +.|+|+|+||||+...+.+. .++.+....+++ ..++
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis-----~e~g~~l~~~LG-fefF 161 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVIS-----HERGRQLADQLG-FEFF 161 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeee-----HHHHHHHHHHhC-hHHh
Confidence 34789999999999998743333333 44555543 89999999999998765443 233344444444 5999
Q ss_pred EEccccCCCHHHHHHHHHhh
Q 008909 528 YSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~ 547 (549)
++|||.+.||+++|+.+...
T Consensus 162 EtSaK~NinVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDI 181 (193)
T ss_pred hhcccccccHHHHHHHHHHH
Confidence 99999999999999988653
No 168
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.75 E-value=5.2e-17 Score=149.29 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=107.2
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||++++++.. +.....++...+.....+...+ ...+.+|||||+.++.. ..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------~~ 68 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK-------------SM 68 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH-------------hh
Confidence 589999999999999999998764 3333344444444333333222 25789999999865421 01
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+... |+..+... ++|+++|+||+|+........ ....+... ....+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-----~~~~~~~~-~~~~~ 142 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT-----DLAQRFAD-AHSMP 142 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCH-----HHHHHHHH-HcCCc
Confidence 223568999999999999876655554 44555543 589999999999876543321 11222222 23468
Q ss_pred EEEEcccc---CCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIA---GQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~---g~~v~~L~~~l~~~~ 548 (549)
++++||++ +.|++++|..+.+.+
T Consensus 143 ~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 143 LFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 99999999 899999999998754
No 169
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.74 E-value=8.6e-17 Score=144.87 Aligned_cols=163 Identities=30% Similarity=0.445 Sum_probs=120.5
Q ss_pred EeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHH
Q 008909 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (549)
Q Consensus 376 ~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~ 455 (549)
++|.+|+||||++|++++.........+++|............+..+.+|||||+.++... ...........+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~-------~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL-------GREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccc-------hhhHHHHHHHHH
Confidence 4799999999999999987666567777888887766665544678999999999764321 111123445567
Q ss_pred hcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCC
Q 008909 456 RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQ 535 (549)
Q Consensus 456 ~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~ 535 (549)
+.+|++++|+|+..........+.......+.|+++|+||+|+........ ...............+++++||+++.
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE---LLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHH---HHHHHHhhcccccCCceEEEeeeccC
Confidence 999999999999997776666666677778999999999999986543221 11111222333456789999999999
Q ss_pred CHHHHHHHHHhhh
Q 008909 536 SVDKYVLYLATSF 548 (549)
Q Consensus 536 ~v~~L~~~l~~~~ 548 (549)
|+.++++++.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (163)
T cd00880 151 GIDELREALIEAL 163 (163)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 170
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.74 E-value=7.9e-17 Score=148.03 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=104.0
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.. +.....+..+.+.....+...+ ..++.+|||||+..+.. ..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------------~~ 66 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS--------------LG 66 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh--------------HH
Confidence 68999999999999999999864 3333333334444333333222 23577999999854321 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
..+++.+|++|+|+|+.++.+.+.. .|...+.. .++|+++|+||+|+..+.... .+.+...+...+.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~ 141 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS-----TKKAQQWCQSNGN 141 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC-----HHHHHHHHHHcCC
Confidence 3467999999999999875443333 23333222 168999999999997532221 2233344455555
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+++++||++|.|++++++.+.+.
T Consensus 142 ~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 142 IPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999998764
No 171
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=143.43 Aligned_cols=155 Identities=23% Similarity=0.164 Sum_probs=118.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.++.++|.+.+|||+|+..++..+... -..|....|.....+....| .+++||||+|+++|.++
T Consensus 9 frlivigdstvgkssll~~ft~gkfae-lsdptvgvdffarlie~~pg~riklqlwdtagqerfrsi------------- 74 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAE-LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI------------- 74 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccc-cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH-------------
Confidence 478999999999999999999876443 33566666665544444444 47899999999998764
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
+..+|+++-++++|+|.+++-+.+... |+.+...+ .+-+.+|+.|+|+...+++. .+-.++++...+
T Consensus 75 -tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt------~EEaEklAa~hg 147 (213)
T KOG0091|consen 75 -TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT------AEEAEKLAASHG 147 (213)
T ss_pred -HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc------HHHHHHHHHhcC
Confidence 345789999999999999987766665 55555543 23367789999998776654 223566777778
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+.++++||++|.||++.|++|++.
T Consensus 148 M~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 148 MAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred ceEEEecccCCCcHHHHHHHHHHH
Confidence 899999999999999999998763
No 172
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.74 E-value=3.7e-17 Score=150.71 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=106.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+|||||++++++.. +. ...+.|+.+.........+ ...+.+|||||+.++..+.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------------- 65 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR-------------- 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CC-CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccc--------------
Confidence 68999999999999999998764 32 3344455555444443322 2467899999996653211
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHH--hCCcEEEEEecccCCCCCc----------hhhhHHHHHHHHHH
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKN----------QQTATYYEQDVREK 517 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~--~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~~~~ 517 (549)
..+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+..... .... .++....
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~~~~~ 142 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVS---QSRAKAL 142 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcC---HHHHHHH
Confidence 1256899999999999987655553 46666665 3689999999999864321 1111 1223333
Q ss_pred HhcCCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 518 LRALDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 518 l~~~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
....+..+++++||++|.||++||+.+.-
T Consensus 143 a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 143 AEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 33344448999999999999999998753
No 173
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.74 E-value=3.1e-17 Score=153.60 Aligned_cols=147 Identities=29% Similarity=0.339 Sum_probs=107.3
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH--hHHHHH------HcCC---
Q 008909 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSEFW------SLGF--- 331 (549)
Q Consensus 263 ~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~--~~~~~~------~~~~--- 331 (549)
...+..++..+|++++|+|++.+.......+ .....++|+++|+||+|+.+.... ....+. ..++
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhH----HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 4456677889999999999987654443333 111237899999999998743221 111111 1232
Q ss_pred CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCC--------eeecCCC
Q 008909 332 SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDR--------TIVSPIS 403 (549)
Q Consensus 332 ~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~--------~~~~~~~ 403 (549)
.++++||++|.|+++|++.+...++. ...++++|.+|+|||||+|++++... ..++..|
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~ 167 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP 167 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC
Confidence 57999999999999999999877641 24789999999999999999998532 4567889
Q ss_pred CceeeeeEEEEeccCCCeEEEEeCCCc
Q 008909 404 GTTRDAIDTEFTGPEGQKFRLIDTAGI 430 (549)
Q Consensus 404 gtt~~~~~~~~~~~~~~~i~l~DTpG~ 430 (549)
|||++.....+. ..+.|+||||+
T Consensus 168 gtT~~~~~~~~~----~~~~~~DtPG~ 190 (190)
T cd01855 168 GTTLDLIKIPLG----NGKKLYDTPGI 190 (190)
T ss_pred CeeeeeEEEecC----CCCEEEeCcCC
Confidence 999998765542 25799999996
No 174
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=3.7e-17 Score=170.66 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=118.3
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCe---------------eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT---------------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+++++|++++|||||+++|++.... ......|+|++.....+. .++.++.++||||+.+|
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHADY 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChHHH
Confidence 44578999999999999999999974211 111236899998776665 36778999999998543
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
+..+...+..+|++++|+|+..++..++..++..+...++| +|+|+||+|+.... ...+.+.+
T Consensus 89 --------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~~ 152 (409)
T CHL00071 89 --------------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVEL 152 (409)
T ss_pred --------------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHHH
Confidence 44556778999999999999999999999999999999999 67889999997532 23344556
Q ss_pred HHHHHHhcCCC----CCEEEEccccCCC
Q 008909 513 DVREKLRALDW----APIVYSTAIAGQS 536 (549)
Q Consensus 513 ~~~~~l~~~~~----~~~i~iSA~~g~~ 536 (549)
++.+.++..++ .+++++||++|.|
T Consensus 153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 153 EVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 77778877654 6899999999863
No 175
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.74 E-value=8e-18 Score=141.76 Aligned_cols=154 Identities=20% Similarity=0.162 Sum_probs=116.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+..++|.+|+|||+|+-++... .+..+++..+..|.....+...+ ..+++||||+|+++|..+ +
T Consensus 10 kllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti--------------t 74 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI--------------T 74 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH--------------H
Confidence 5678999999999999998755 46666666677777665555432 347899999999888643 2
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
..++++.|++|+|||++++-+.... +|++.++.. ..|-++|+||+|+...+-.. .+..+....+ -+..+|+
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~-----t~dAr~~A~~-mgie~FE 148 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVD-----TEDARAFALQ-MGIELFE 148 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeee-----hHHHHHHHHh-cCchhee
Confidence 3478999999999999987665554 488888876 57899999999987654433 2233333333 3468999
Q ss_pred EccccCCCHHHHHHHHHhh
Q 008909 529 STAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~ 547 (549)
+|||...|++..|.-|.+.
T Consensus 149 TSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQ 167 (198)
T ss_pred hhhhhcccchHHHHHHHHH
Confidence 9999999999999988764
No 176
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=2.3e-17 Score=157.14 Aligned_cols=163 Identities=22% Similarity=0.225 Sum_probs=126.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
....+.++|.||+|||||+|++...+ ..+.++++||..+....+.+.+..++.+.|.||+.+- ++.......
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G-------Ah~nkGlG~ 266 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG-------AHMNKGLGY 266 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCcccccc-------ccccCcccH
Confidence 34578999999999999999999876 5899999999999888777766677999999999773 344455567
Q ss_pred HHHHHHhcCCcEEEEEEcccc---CCHhHHH-HHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc
Q 008909 450 RAFRAIRRSDVVALVIEAMAC---ITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~---~~~~~~~-~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~ 520 (549)
..++++..|+.++||+|++.+ -..++.+ ++.++..+ ..|.+||+||+|+..++. ..+.+..+.
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--------~~l~~L~~~ 338 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--------NLLSSLAKR 338 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--------HHHHHHHHH
Confidence 788999999999999999976 3344444 33445443 689999999999864321 112344444
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+....++++||++++|+.+|++.+.+.+
T Consensus 339 lq~~~V~pvsA~~~egl~~ll~~lr~~~ 366 (366)
T KOG1489|consen 339 LQNPHVVPVSAKSGEGLEELLNGLRELL 366 (366)
T ss_pred cCCCcEEEeeeccccchHHHHHHHhhcC
Confidence 4555799999999999999999887653
No 177
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=6e-17 Score=149.46 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=99.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++++.......+..|. +. ..+. .++..+.+|||||+.++.. .
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~--~~--~~~~-~~~~~~~l~D~~G~~~~~~--------------~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGS--NV--EEIV-YKNIRFLMWDIGGQESLRS--------------S 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc--ce--EEEE-ECCeEEEEEECCCCHHHHH--------------H
Confidence 35899999999999999999987654433222222 22 2232 2467899999999855321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHH-HHhcCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE-KLRALDWA 524 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~l~~~~~~ 524 (549)
...+++++|++++|+|++++..... ...+..+.. .++|+++|+||+|+...... +++.+.+.. .... ...
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~---~~i~~~l~~~~~~~-~~~ 151 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTP---AEISESLGLTSIRD-HTW 151 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCH---HHHHHHhCcccccC-Cce
Confidence 2345789999999999987533222 223333322 25899999999998653211 111222210 1111 234
Q ss_pred CEEEEccccCCCHHHHHHHHHh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
+++++||++|.||+++|++|.+
T Consensus 152 ~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 152 HIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEEecccCCCCCHHHHHHHHhc
Confidence 7899999999999999999974
No 178
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.74 E-value=3.8e-17 Score=170.94 Aligned_cols=159 Identities=31% Similarity=0.336 Sum_probs=118.5
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..++|+++|.+|||||||+|+|++.....+++.+++|++.....+.++|.++.+|||||+.+.... .+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~----ie~~------ 271 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADF----VERL------ 271 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhH----HHHH------
Confidence 457899999999999999999999877788999999999999999999999999999998643211 0000
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
-...+..++..+|++++|+|++.+.+..+. ++..+.. .+.|+++|+||+|+......
T Consensus 272 --------------------gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~~~~ 328 (442)
T TIGR00450 272 --------------------GIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKINSLE 328 (442)
T ss_pred --------------------HHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCcchh
Confidence 012345677899999999999887665544 3333332 37899999999998654221
Q ss_pred hHHHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 322 ~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. ....+.+++.+||++ .|+.++++.+.+.+.
T Consensus 329 ~~--~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 329 FF--VSSKVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred hh--hhhcCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 11 123455789999998 689888888876654
No 179
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.74 E-value=7.9e-17 Score=146.30 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=98.5
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+||||+++++.+.......+..+.+ . ..........+.+|||||+.++.. ...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~--~--~~~~~~~~~~l~i~D~~G~~~~~~--------------~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN--V--EMLQLEKHLSLTVWDVGGQEKMRT--------------VWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc--e--EEEEeCCceEEEEEECCCCHhHHH--------------HHH
Confidence 4789999999999999999987654332222222 1 222223456899999999854311 123
Q ss_pred HHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHH-HHHhcCCCCCE
Q 008909 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALDWAPI 526 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 526 (549)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+....... ++...+. ..+......++
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~ 139 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE---EITRRFKLKKYCSDRDWYV 139 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHH---HHHHHcCCcccCCCCcEEE
Confidence 357899999999999885432222 23333322 478999999999986432211 1111111 11111123468
Q ss_pred EEEccccCCCHHHHHHHHHh
Q 008909 527 VYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~ 546 (549)
+++||++|.|++++|++|.+
T Consensus 140 ~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 140 QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EecccccCCChHHHHHHHhc
Confidence 99999999999999999875
No 180
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=4.9e-17 Score=150.77 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=107.0
Q ss_pred CCCCCCCCeEEEEcCCCCchhhHHHhhhCCC-ceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhh
Q 008909 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (549)
Q Consensus 157 ~~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i 235 (549)
..+..+.++|+|+|++|+|||||+|+|++.. ...+++.+++|.++..... + ..+.+|||||+........
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~------ 82 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKE------ 82 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChh------
Confidence 3445668899999999999999999999875 4556777888877665433 2 4799999999854221110
Q ss_pred hhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCC
Q 008909 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (549)
Q Consensus 236 ~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~ 315 (549)
.. ..+...+ ..+.+....++++++|+|++.+++..+..+..++... +.|+++++||+|+
T Consensus 83 --------------~~----~~~~~~~-~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~--~~pviiv~nK~D~ 141 (179)
T TIGR03598 83 --------------EK----EKWQKLI-EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER--GIPVLIVLTKADK 141 (179)
T ss_pred --------------HH----HHHHHHH-HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccc
Confidence 00 0011111 1122333457899999999988888777777777654 7899999999998
Q ss_pred ChhhHH-----hHHHHHHc---CCCceEeeccCCCChh
Q 008909 316 PRKGIM-----QVSEFWSL---GFSPLPISAISGTGTG 345 (549)
Q Consensus 316 ~~~~~~-----~~~~~~~~---~~~~v~vSA~~g~gi~ 345 (549)
...... ........ ..+++++||++|+|++
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 142 LKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 743211 11122222 2479999999999974
No 181
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.74 E-value=5.3e-17 Score=149.92 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=101.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++..... ....|++..+.. ... .++..+.+|||||+.++.. .
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~--~~~-~~~~~l~l~D~~G~~~~~~--------------~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVE--TVT-YKNISFTVWDVGGQDKIRP--------------L 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceE--EEE-ECCEEEEEEECCCChhhHH--------------H
Confidence 36899999999999999999975433 233444433332 222 2467899999999865321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++|+|+|++++.+... ..++..+.. .+.|++||+||+|+...... +++...+...........
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~ 150 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLGLHSIRDRNWY 150 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhCccccCCCcEE
Confidence 2335799999999999987543222 334444432 25899999999998653221 111121110000112234
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||+++|++|.+.+
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998764
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.74 E-value=3.5e-17 Score=178.48 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=117.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc---CCCeEEEEeCCCccchhhhccCCChhhh
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP---EGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~---~~~~i~l~DTpG~~~~~~~~~~~~~~e~ 445 (549)
.+.+.|+++|++++|||||++++++... .....+|+|.+.....+... .+..+.+|||||+..|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~---------- 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSS---------- 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHH----------
Confidence 4567999999999999999999987653 33445566665433332221 357899999999966532
Q ss_pred hHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHH--H-hcC-
Q 008909 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK--L-RAL- 521 (549)
Q Consensus 446 ~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~--l-~~~- 521 (549)
...++++.+|++|+|||++++...+..+.+..+...++|+|||+||+|+...... .+.+.+... + ...
T Consensus 311 ----mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e----~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 311 ----MRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTE----RIKQQLAKYNLIPEKWG 382 (742)
T ss_pred ----HHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHH----HHHHHHHHhccchHhhC
Confidence 2335779999999999999988888888888888889999999999998753211 112222211 1 111
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+..+++++||++|.|+++|+++|..+
T Consensus 383 ~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred CCceEEEEECCCCCCHHHHHHhhhhh
Confidence 23689999999999999999998653
No 183
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=5.4e-17 Score=148.78 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=106.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+++++|.+|+|||||++++++.. +.....++.+.+.....+.. ++ ..+.+|||||+.++..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~------------- 71 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRS------------- 71 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHH-------------
Confidence 4689999999999999999998653 33334444445554444443 33 4578899999854321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+...+... ..+.+.+......
T Consensus 72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~------~~~~~~~~~~~~~ 144 (169)
T cd04114 72 -ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVS------QQRAEEFSDAQDM 144 (169)
T ss_pred -HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC------HHHHHHHHHHcCC
Confidence 123467999999999999875443333 34444433 468999999999987544322 1122233333346
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|++++|+.|.+.+
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999998753
No 184
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=4.8e-17 Score=180.09 Aligned_cols=163 Identities=20% Similarity=0.342 Sum_probs=121.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
.+|+++|++|+|||||+|+++|.. ..+.+.+|+|++.....+. +++.++.+|||||+.++.......+..|. +.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~--i~~~ 79 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IACH 79 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHH--HHHH
Confidence 579999999999999999999875 5788899999998887776 46778999999999876432111111121 2222
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
+.....+|++++|+|+++. +....++.++.+.++|+++|+||+|+...+.... ..+.+ ++..+.+++++||
T Consensus 80 ~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~i---d~~~L----~~~LG~pVvpiSA 150 (772)
T PRK09554 80 YILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRI---DIDAL----SARLGCPVIPLVS 150 (772)
T ss_pred HHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHH---HHHHH----HHHhCCCEEEEEe
Confidence 2234689999999999873 4456677788889999999999999875433221 12223 3333579999999
Q ss_pred ccCCCHHHHHHHHHhh
Q 008909 532 IAGQSVDKYVLYLATS 547 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~ 547 (549)
++|.|+++|++.+.+.
T Consensus 151 ~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 151 TRGRGIEALKLAIDRH 166 (772)
T ss_pred ecCCCHHHHHHHHHHh
Confidence 9999999999998764
No 185
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.74 E-value=3.1e-17 Score=149.91 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=100.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||+++++... + ....+.++.......... ++ ..+.+|||||+.++. ...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~-------------~~~ 64 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-F-IGEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQAD-------------TEQ 64 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-c-ccccCCChHHhceEEEEE-CCEEEEEEEEECCCCcccc-------------cch
Confidence 47899999999999999998753 2 223333332222222222 33 368899999996410 011
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH-----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+........ ++..+..... +.
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----~~~~~~~~~~-~~ 138 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST-----EEGEKLASEL-GC 138 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH-----HHHHHHHHHc-CC
Confidence 234678999999999999865544433 4444443 3699999999999865433221 1122222223 36
Q ss_pred CEEEEccccCC-CHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQ-SVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~-~v~~L~~~l~~~~ 548 (549)
+++++||++|. ||+++|..+++.+
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHHH
Confidence 89999999994 9999999998754
No 186
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.74 E-value=4.3e-17 Score=153.08 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=103.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceee-eeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRD-AIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~-~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
+|+++|.+|+|||||++++++.. +....+.+|+.. .....+.. ++ ..+.+|||||+.++...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~------------- 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAM------------- 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhh-------------
Confidence 68999999999999999999865 333223333322 22223332 33 35679999998654211
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh--CCcEEEEEecccCCCCCc-hhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKN-QQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~--~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|+++..+.+.. .|+..+... +.|+++|+||+|+..... ..... ...+.+.... .+.+
T Consensus 67 -~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~--~~~~~~~~~~-~~~~ 142 (193)
T cd04118 67 -SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVD--FHDVQDFADE-IKAQ 142 (193)
T ss_pred -hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccC--HHHHHHHHHH-cCCe
Confidence 12246899999999999886444433 366666654 689999999999864321 11100 1222233232 3467
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++||+++.+.+
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998753
No 187
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=3.9e-17 Score=153.22 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=106.4
Q ss_pred eEEEEcCCCCchhhHHHhhhCC------CceeeecCCCccccceeeeeeeC--------------CceEEEEEccccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGG------NRAIVVDEPGVTRDRMYGRSFWG--------------EHEFMLVDTGGVLNV 224 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~------~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~liDTpG~~~~ 224 (549)
+|+++|++|+|||||+++|++. ........+++|.+.......+. +..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 6999999999999999999863 11223334567777665555554 67899999999842
Q ss_pred CCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCC
Q 008909 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (549)
Q Consensus 225 ~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (549)
+.+.+...+..+|++++|+|++.+......+...+.... +.
T Consensus 81 -------------------------------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~--~~ 121 (192)
T cd01889 81 -------------------------------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL--CK 121 (192)
T ss_pred -------------------------------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc--CC
Confidence 112334556778999999999887665554444433333 67
Q ss_pred eEEEEeccCCCChhhHH-----hHHHH----H----HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 305 FIILAVNKCESPRKGIM-----QVSEF----W----SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 305 p~ivv~NK~D~~~~~~~-----~~~~~----~----~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
|+++++||+|+...... ..... + ..+++++++||++|.|+.+|++.+...+.
T Consensus 122 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 122 KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 99999999998743211 11111 1 13467999999999999999999987664
No 188
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.74 E-value=7.9e-17 Score=147.91 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=99.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||++++++... ..+.|++..+. ..+. .++.++.+|||||+.++.. ...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~T~~~~~--~~~~-~~~~~i~l~Dt~G~~~~~~--------------~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIPTIGFNV--ETVE-YKNLKFTIWDVGGKHKLRP--------------LWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCCcCceeE--EEEE-ECCEEEEEEECCCChhcch--------------HHH
Confidence 478999999999999999998632 22333322222 2233 2567899999999865321 123
Q ss_pred HHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC-----
Q 008909 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD----- 522 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~----- 522 (549)
.+++.+|++++|+|++++-+..+. .++..+.. .+.|++||+||+|+..... .+++.+.+....
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~ 134 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS-------VEEMTELLSLHKLCCGR 134 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCC-------HHHHHHHhCCccccCCC
Confidence 357999999999999875333222 34444432 2489999999999864321 122223332111
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
...++++||++|.||+++|++|.+.+
T Consensus 135 ~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 135 SWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred cEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 12578899999999999999998643
No 189
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.74 E-value=3.5e-17 Score=153.81 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=102.9
Q ss_pred eCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHH
Q 008909 377 VGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (549)
Q Consensus 377 ~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~ 455 (549)
+|..|+|||||+++++... +.....+.+..+.....+... ....+.||||||+.++..+ ...++
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l--------------~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL--------------RDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh--------------hHHHh
Confidence 5899999999999999654 333333433334433333321 2457899999999765321 22368
Q ss_pred hcCCcEEEEEEccccCCHhHHH-HHHHHHH--hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccc
Q 008909 456 RRSDVVALVIEAMACITEQDCR-IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (549)
Q Consensus 456 ~~ad~~llVvD~~~~~~~~~~~-~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~ 532 (549)
+++|++|+|+|++++.+.+... |+..+.+ .+.|+++|+||+|+... ... .+.+ . +....+.++++|||+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-~v~-----~~~~-~-~~~~~~~~~~e~SAk 137 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-KVK-----AKSI-T-FHRKKNLQYYDISAK 137 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-cCC-----HHHH-H-HHHHcCCEEEEEeCC
Confidence 9999999999999876655553 6666766 46899999999998542 221 1111 2 222334689999999
Q ss_pred cCCCHHHHHHHHHhhh
Q 008909 533 AGQSVDKYVLYLATSF 548 (549)
Q Consensus 533 ~g~~v~~L~~~l~~~~ 548 (549)
+|.||+++|.+|.+.+
T Consensus 138 ~~~~v~~~F~~l~~~i 153 (200)
T smart00176 138 SNYNFEKPFLWLARKL 153 (200)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998653
No 190
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=1.2e-16 Score=149.51 Aligned_cols=155 Identities=19% Similarity=0.135 Sum_probs=104.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++... .....+..+.+.....+... ....+.+|||||+.++.. ..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------------~~ 66 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEF-SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS--------------LN 66 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh--------------hH
Confidence 689999999999999999997653 33233444444333333321 134678999999865421 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|++++.+..... |+..+... ..|+++|+||+|+........ ......... .+.+++
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~-----~~~~~~~~~-~~~~~~ 140 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDS-----NIAKSFCDS-LNIPFF 140 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCH-----HHHHHHHHH-cCCeEE
Confidence 34678999999999998865544433 45555543 579999999999875443221 111222222 345899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|++++|.++.+.+
T Consensus 141 evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 141 ETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999987653
No 191
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.73 E-value=3.8e-17 Score=156.40 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=108.5
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCe------------------------------eecCCCCceeeeeEEEEeccCCCeE
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPEGQKF 422 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~------------------------------~~~~~~gtt~~~~~~~~~~~~~~~i 422 (549)
+|+++|+.++|||||+.+|+..... ......|+|++.....+.. .+.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 4799999999999999999742111 0111348999988887764 78899
Q ss_pred EEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-------CCHhHHHHHHHHHHhC-CcEEEEEe
Q 008909 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEG-KGCLIVVN 494 (549)
Q Consensus 423 ~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-------~~~~~~~~l~~l~~~~-~p~ivv~N 494 (549)
.+|||||+.+| ...+...++.+|++|+|+|++++ ...+....+..+...+ +|+++|+|
T Consensus 80 ~liDtpG~~~~--------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvN 145 (219)
T cd01883 80 TILDAPGHRDF--------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVN 145 (219)
T ss_pred EEEECCChHHH--------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 99999999654 23445677899999999999883 3445555555555555 68999999
Q ss_pred cccCCCC-CchhhhHHHHHHHHHHHhcCCC----CCEEEEccccCCCHH
Q 008909 495 KWDTIPN-KNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVD 538 (549)
Q Consensus 495 K~Dl~~~-~~~~~~~~~~~~~~~~l~~~~~----~~~i~iSA~~g~~v~ 538 (549)
|+|+... ......+.+.+.+...++..+. .+++++||++|.|++
T Consensus 146 K~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 146 KMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999742 1122233445566666665543 579999999999986
No 192
>PRK04213 GTP-binding protein; Provisional
Probab=99.73 E-value=1.4e-16 Score=150.62 Aligned_cols=165 Identities=31% Similarity=0.405 Sum_probs=105.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..++|+++|.+|||||||+|+|++.. ..++..+++|...... .+. ++.+|||||+........
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~------------ 70 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPK------------ 70 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCH------------
Confidence 46799999999999999999999876 4566777888765432 232 689999999743221111
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCc-----------chHHHHHHHHHccCCCeEEEEe
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA-----------ADEEIADWLRKNYMDKFIILAV 310 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~-----------~~~~~~~~l~~~~~~~p~ivv~ 310 (549)
... +.+...+...+...+..++++++|+|+...... .+.++...+... +.|+++|+
T Consensus 71 -------~~~----~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~ 137 (201)
T PRK04213 71 -------EVQ----EKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAV 137 (201)
T ss_pred -------HHH----HHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEE
Confidence 000 111111112223345668999999998642211 223344555443 78999999
Q ss_pred ccCCCChhhH---HhHHHHHHc-------CCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 311 NKCESPRKGI---MQVSEFWSL-------GFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 311 NK~D~~~~~~---~~~~~~~~~-------~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
||+|+.+... ......... +.+++++||++| |++++++.+...+..
T Consensus 138 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 138 NKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 9999865431 111111111 125799999999 999999999877654
No 193
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.73 E-value=1.1e-16 Score=145.55 Aligned_cols=153 Identities=19% Similarity=0.125 Sum_probs=102.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+||||+++++++.... ....+..+.+.....+... ....+.+|||||+..+.. ..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------~~ 66 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD-PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT--------------LT 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-cccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh--------------hh
Confidence 6899999999999999999986532 2222322222222222221 235789999999865421 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+..... . .+...+.... ...++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~-~-----~~~~~~~~~~-~~~~~ 139 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV-T-----REEGLKFARK-HNMLF 139 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc-C-----HHHHHHHHHH-cCCEE
Confidence 33578999999999998765544433 4444544 3688999999999973321 1 1222233333 34689
Q ss_pred EEEccccCCCHHHHHHHHHhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++||++|.|++++++.+.+.
T Consensus 140 ~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 140 IETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 194
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=7.1e-17 Score=146.08 Aligned_cols=150 Identities=29% Similarity=0.391 Sum_probs=108.3
Q ss_pred EEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCc
Q 008909 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIP 247 (549)
Q Consensus 168 i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~ 247 (549)
|+|++|+|||||+|+|++.. ...+.++++|.+.....+.+++..+.+|||||+..+......
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~----------------- 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED----------------- 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-----------------
Confidence 58999999999999999876 566778999999988888888889999999999764432110
Q ss_pred hhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH--hH
Q 008909 248 LATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QV 323 (549)
Q Consensus 248 ~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~--~~ 323 (549)
..+ ....+ ..+|++++|+|+..+. ....+...+... ++|+++|+||+|+.+.... ..
T Consensus 63 ------------~~~---~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~ 123 (158)
T cd01879 63 ------------EKV---ARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDL 123 (158)
T ss_pred ------------HHH---HHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHc--CCCEEEEEehhhhcccccchhhH
Confidence 001 11223 4899999999987632 222333344443 7899999999998654211 11
Q ss_pred HHH-HHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 324 SEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 324 ~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
..+ ...+.+++++||.+|.|+.+++..+...
T Consensus 124 ~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 124 DKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred HHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 111 2246789999999999999999888664
No 195
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.73 E-value=1.3e-16 Score=147.97 Aligned_cols=152 Identities=17% Similarity=0.144 Sum_probs=101.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|..|+|||||++++...... ...|++..+.. .+. .++..+.+|||||+.++.. .
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g~~~~--~~~-~~~~~~~i~D~~Gq~~~~~--------------~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVE-YKNISFTVWDVGGQDKIRP--------------L 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcceeEE--EEE-ECCEEEEEEECCCCHHHHH--------------H
Confidence 358999999999999999999865433 23343333332 222 2567899999999855321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC---
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD--- 522 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~--- 522 (549)
...+++++|++|+|+|++++.+..+. ..+..+.. .+.|++||+||+|+..... .+++.+.+.-..
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~l~l~~~~~ 150 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQ 150 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC-------HHHHHHHhCccccCC
Confidence 23357999999999999975433222 23333322 3689999999999865432 122333332111
Q ss_pred -CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 -WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 -~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
...++++||++|.||+++|++|.+.+
T Consensus 151 ~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 151 RHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 11356899999999999999998764
No 196
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.73 E-value=6.3e-17 Score=148.54 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=104.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+|||||++++++... .....+ +..+........ .....+.+|||||+.++... .
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~--------------~ 65 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF-PTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL--------------R 65 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCccccccc--------------c
Confidence 689999999999999999998753 222223 222322222222 12346899999999764211 1
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh------HHHHHHHHHHHhcC
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA------TYYEQDVREKLRAL 521 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~------~~~~~~~~~~l~~~ 521 (549)
...++.+|++++|+|++++.+.... .|+..+... +.|+++|+||+|+......... ........+.....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 145 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI 145 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh
Confidence 1145889999999999875443332 355555544 5999999999998765432100 00022333444545
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+..+++++||++|.|+++++++|.++
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~i~~~ 171 (171)
T cd00157 146 GAIGYMECSALTQEGVKEVFEEAIRA 171 (171)
T ss_pred CCeEEEEeecCCCCCHHHHHHHHhhC
Confidence 54589999999999999999998763
No 197
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=8.1e-17 Score=167.26 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=123.3
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC------Cee---------ecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED------RTI---------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~------~~~---------~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+++++|+.++|||||+++|++.. .+. .....|+|++.....+.. ++.++.++||||+.+|
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHADY 88 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHHH
Confidence 345689999999999999999998631 011 112458999887666543 5678999999999654
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
+..+...+..+|++++|+|+.++...++.+++..+...++| +|+|+||+|+..... ..+.+.+
T Consensus 89 --------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~--~~~~i~~ 152 (394)
T PRK12736 89 --------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEE--LLELVEM 152 (394)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHH--HHHHHHH
Confidence 34556677899999999999998899999999999999998 678899999874322 2233445
Q ss_pred HHHHHHhcCCC----CCEEEEccccCC--------CHHHHHHHHHhh
Q 008909 513 DVREKLRALDW----APIVYSTAIAGQ--------SVDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~~~~----~~~i~iSA~~g~--------~v~~L~~~l~~~ 547 (549)
++.+.++..++ .+++++||++|. ++.+|++.+.+.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 153 EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 66677666553 689999999983 688898888764
No 198
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.73 E-value=6.6e-17 Score=147.19 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=102.1
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++++..... ...+............+++ ..+.+|||||...+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT--------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh---------------
Confidence 379999999999999999998764211 1111111122222334444 3578999999865322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
....++..+|++|+|+|.+.+.+.... .+...+.+...+.|+++|+||+|+.....
T Consensus 65 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~ 121 (161)
T cd04124 65 -----------------------MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT 121 (161)
T ss_pred -----------------------hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH
Confidence 223567889999999998775443332 34444554445789999999999864322
Q ss_pred HhHHHHH-HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 MQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ~~~~~~~-~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.....+. ..+.+++++||++|.|+.++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 122 QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222222 34568899999999999999998876654
No 199
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.73 E-value=9.4e-17 Score=147.22 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=102.8
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+++++|.+|+||||+++++++.... .....++.+......... ....+.+|||||+.++...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------------- 65 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAM-------------- 65 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhh--------------
Confidence 36899999999999999999976532 222223333322222221 2347889999999775321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+... +...+.. .+.|+++|+||+|+...+.... +.........+..+
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~-----~~~~~~~~~~~~~~ 140 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR-----EDGVSLSQQWGNVP 140 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH-----HHHHHHHHHcCCce
Confidence 122578899999999998754433333 3343432 3689999999999875443221 11222223333468
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++||++|.|++++|.++.+.
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999863
No 200
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=142.89 Aligned_cols=168 Identities=22% Similarity=0.276 Sum_probs=121.3
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+-|+++|.+|+||||++|++++.+ .+.++..||.|+..-...+ + ..+.++|.||+.=-.. .......
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~-~~~~lVDlPGYGyAkv-----~k~~~e~ 92 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---D-DELRLVDLPGYGYAKV-----PKEVKEK 92 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---c-CcEEEEeCCCcccccC-----CHHHHHH
Confidence 345689999999999999999999965 4789999999987543332 2 3389999999842110 1111111
Q ss_pred ----HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 ----VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ----~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
+.++++.=..-.++++++|+.++....|.+.++++...++|++||+||+|.+...... .....+++.+.....
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~---k~l~~v~~~l~~~~~ 169 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERN---KQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHH---HHHHHHHHHhcCCCC
Confidence 2222222234678899999999999999999999999999999999999998753321 223444544443322
Q ss_pred CC--EEEEccccCCCHHHHHHHHHhhh
Q 008909 524 AP--IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~--~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.. ++.+|+.++.|+++|...|.+.+
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHh
Confidence 22 88889999999999999998765
No 201
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.73 E-value=1.3e-16 Score=145.20 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=103.0
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.... ....+++.+......... .+..+.+|||||+.++.. ..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------------~~ 65 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA--------------IR 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH--------------HH
Confidence 6899999999999999999976432 233344444433333322 234689999999865421 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...++.+|++++|+|++++-+.... .++..+.. .++|+++|+||+|+....... ...........+ .++
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~-----~~~~~~~~~~~~-~~~ 139 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS-----SEEAANLARQWG-VPY 139 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccC-----HHHHHHHHHHhC-CeE
Confidence 3367899999999999875433222 23333333 479999999999987532211 112222333333 589
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|+++||+.+.+.+
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 140 VETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 202
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.73 E-value=2e-16 Score=149.61 Aligned_cols=159 Identities=19% Similarity=0.156 Sum_probs=105.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCC-e-eecCCCCceeeeeEEEEecc--------------------------------C
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDR-T-IVSPISGTTRDAIDTEFTGP--------------------------------E 418 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~-~-~~~~~~gtt~~~~~~~~~~~--------------------------------~ 418 (549)
+|+++|++++|||||+..+.+... . ......|.+...-...+.+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999976411 0 00001122221111111100 1
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-CCHhHHHHHHHHHHhCC-cEEEEEecc
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-ITEQDCRIAERIEQEGK-GCLIVVNKW 496 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-~~~~~~~~l~~l~~~~~-p~ivv~NK~ 496 (549)
..++.+|||||+.++ ...++..+..+|++++|+|++++ ...+....+..+...+. |+++|+||+
T Consensus 82 ~~~i~~iDtPG~~~~--------------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 82 VRHVSFVDCPGHEIL--------------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccEEEEEECCChHHH--------------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 268999999998543 44567778899999999999974 34555566666655554 689999999
Q ss_pred cCCCCCchhhhHHHHHHHHHHHhcC--CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 497 DTIPNKNQQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 497 Dl~~~~~~~~~~~~~~~~~~~l~~~--~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
|+..... .....+.+.+.+... .+.+++++||++|.|+++|+++|.+.+
T Consensus 148 Dl~~~~~---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 148 DLVKEEQ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred hccCHHH---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 9975321 112234455555432 346899999999999999999998754
No 203
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.73 E-value=9.4e-17 Score=147.99 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=105.2
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+|||||++++++.... ....+++.+.....+...+ ...+.+|||||+.++....
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------------- 65 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR-------------- 65 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccc--------------
Confidence 6899999999999999999986532 2223344443333333211 2347799999997653211
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHH--hCCcEEEEEecccCCCCCchhh-h------HHHHHHHHHHHhc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQT-A------TYYEQDVREKLRA 520 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~-~------~~~~~~~~~~l~~ 520 (549)
...++.+|++++|+|++++-+.+.. .|+..+.. .+.|+++|+||+|+........ . .-..++.....+.
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 1246899999999999986555544 24555544 4799999999999865321100 0 0001223344444
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+..+++++||++|.||+++|+.+++.
T Consensus 146 ~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 146 IGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 555579999999999999999998764
No 204
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.72 E-value=2.2e-16 Score=143.34 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=103.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+||||++|++++.... ....+.++.+.........+ ...+.+|||||+..+.. ..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------------~~ 66 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA--------------LG 66 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH--------------hh
Confidence 6899999999999999999986532 22233333333333333222 34688999999855422 11
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|++++.+.+... ++..+... ++|+++|+||+|+....... .+.+.+.... .+.+++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~-----~~~~~~~~~~-~~~~~~ 140 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS-----KSEAEEYAKS-VGAKHF 140 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC-----HHHHHHHHHH-cCCEEE
Confidence 12468999999999998865444443 44444443 68999999999987543322 1222233332 346799
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|++++++++.+.+
T Consensus 141 ~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 141 ETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
No 205
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.72 E-value=1.1e-16 Score=147.67 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||++++++... .....+ ++.+.....+...+ ...+.+|||||+.++...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVP-TVFENYVADIEVDGKQVELALWDTAGQEDYDRL-------------- 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-ccccceEEEEEECCEEEEEEEEeCCCchhhhhc--------------
Confidence 4799999999999999999998643 222222 33333223333222 236789999999654321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHH--hCCcEEEEEecccCCCCCchhh-------hHHHHHHHHHHHh
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQT-------ATYYEQDVREKLR 519 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~-------~~~~~~~~~~~l~ 519 (549)
....++.+|++++|+|+++..+.+.. .|+..+.. .++|+++|+||+|+........ .........+...
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 01246899999999999875443443 24555554 3789999999999864321100 0000122233334
Q ss_pred cCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 520 ALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 520 ~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+..++++|||++|.|++++|++|.+..
T Consensus 146 ~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 146 KIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 44555899999999999999999998653
No 206
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.72 E-value=2.6e-17 Score=151.75 Aligned_cols=154 Identities=24% Similarity=0.263 Sum_probs=107.7
Q ss_pred EEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhcccccCC
Q 008909 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (549)
Q Consensus 168 i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi 246 (549)
++|.+|||||||+|+|++... .+.+.+++|..+..+.+.+. +.++.+|||||+.......+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~---------------- 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRG---------------- 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCC----------------
Confidence 589999999999999998864 56778889988888888888 899999999998542211110
Q ss_pred chhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC------CcchH-HHHHHHHHc--------cCCCeEEEEec
Q 008909 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------TAADE-EIADWLRKN--------YMDKFIILAVN 311 (549)
Q Consensus 247 ~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~------~~~~~-~~~~~l~~~--------~~~~p~ivv~N 311 (549)
+...+...+..+|++++|+|+..+. ..... .+...+... ..++|+++|+|
T Consensus 64 ---------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 128 (176)
T cd01881 64 ---------------LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLN 128 (176)
T ss_pred ---------------ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEE
Confidence 1113345677899999999987653 11111 122222211 13789999999
Q ss_pred cCCCChhhHHhHH----HHHHcCCCceEeeccCCCChhhhHHHHHH
Q 008909 312 KCESPRKGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 312 K~D~~~~~~~~~~----~~~~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
|+|+......... .....+.+++++||+++.|++++++.+..
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 129 KIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred chhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 9999754433221 12223457899999999999999988754
No 207
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=8.6e-17 Score=145.76 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=100.3
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+||||+++++++.......+..+.+.+ .+. .++..+.+|||||+..+.. ...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~----~~~-~~~~~~~i~D~~G~~~~~~--------------~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE----TVE-YKNVSFTVWDVGGQDKIRP--------------LWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE----EEE-ECCEEEEEEECCCChhhHH--------------HHH
Confidence 478999999999999999998763222222232222 222 2456899999999965321 123
Q ss_pred HHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 453 RAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
..++.+|++++|+|++++-+... ..++..+.. .+.|+++|+||+|+...... +++.+.+..........+++
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhChhhccCCcEEEE
Confidence 35689999999999997532222 223333322 47899999999998764321 12222222221122345899
Q ss_pred EEccccCCCHHHHHHHHHh
Q 008909 528 YSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~ 546 (549)
++||++|.|++++|++|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999999864
No 208
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.72 E-value=7.5e-17 Score=149.36 Aligned_cols=151 Identities=26% Similarity=0.343 Sum_probs=100.2
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCcee--------eec------CCCccccceeeeeee-----CCceEEEEEcccccccC
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAI--------VVD------EPGVTRDRMYGRSFW-----GEHEFMLVDTGGVLNVS 225 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~--------~~~------~~~~t~~~~~~~~~~-----~~~~~~liDTpG~~~~~ 225 (549)
.|+++|++|+|||||+++|++..... ..+ ..|+|.......+.+ .+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998642111 111 223444333333323 24567899999986521
Q ss_pred CCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe
Q 008909 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (549)
Q Consensus 226 ~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (549)
..+..++..+|++|+|+|++.+....+......+... +.|
T Consensus 82 --------------------------------------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~--~~~ 121 (179)
T cd01890 82 --------------------------------------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALEN--NLE 121 (179)
T ss_pred --------------------------------------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHc--CCC
Confidence 1334567889999999999887665555444433333 789
Q ss_pred EEEEeccCCCChhhHHhH-HHH-HHcCC---CceEeeccCCCChhhhHHHHHHHh
Q 008909 306 IILAVNKCESPRKGIMQV-SEF-WSLGF---SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 306 ~ivv~NK~D~~~~~~~~~-~~~-~~~~~---~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+++|+||+|+........ ..+ ...++ .++++||++|.|++++++.+...+
T Consensus 122 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 122 IIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 999999999864322111 111 11233 379999999999999999987655
No 209
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.72 E-value=7.1e-17 Score=174.87 Aligned_cols=153 Identities=24% Similarity=0.373 Sum_probs=114.0
Q ss_pred CCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhc
Q 008909 378 GRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRR 457 (549)
Q Consensus 378 G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 457 (549)
|.+|+||||++|++++.. +.+++.+|+|++.....+.+ ++.++.+|||||+.++... .....+.+.+...+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~------s~~e~v~~~~l~~~~ 72 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTF------SLEEEVARDYLLNEK 72 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCcc------chHHHHHHHHHhhcC
Confidence 789999999999999875 57889999999988777764 6678999999999775421 111222333333468
Q ss_pred CCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCH
Q 008909 458 SDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSV 537 (549)
Q Consensus 458 ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v 537 (549)
+|++++|+|+++ .+....+..++.+.++|+++|+||+|+......... . +.+.+..+.+++++||++|.|+
T Consensus 73 aDvvI~VvDat~--ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d---~----~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 73 PDLVVNVVDASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRID---E----EKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred CCEEEEEecCCc--chhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhh---H----HHHHHHcCCCEEEEECCCCCCH
Confidence 999999999987 234556666777789999999999998654332210 1 2233333479999999999999
Q ss_pred HHHHHHHHhh
Q 008909 538 DKYVLYLATS 547 (549)
Q Consensus 538 ~~L~~~l~~~ 547 (549)
+++++.+.+.
T Consensus 144 ~eL~~~i~~~ 153 (591)
T TIGR00437 144 ERLKDAIRKA 153 (591)
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 210
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.72 E-value=3.7e-17 Score=158.43 Aligned_cols=187 Identities=20% Similarity=0.234 Sum_probs=126.1
Q ss_pred HHhhhccEEEEEEeCCCCCCcchHHHHHHHHH-ccCCCeEEEEeccCCCChhhHH--h-HHHHHHcCCCceEeeccCCCC
Q 008909 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM--Q-VSEFWSLGFSPLPISAISGTG 343 (549)
Q Consensus 268 ~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~~--~-~~~~~~~~~~~v~vSA~~g~g 343 (549)
..++++|.+++|+|+..+..... .+.+|+.. ...+.|+++|+||+|+.+.... . ...+...+++++.+||++|.|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG 110 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 45788999999999987552221 12233321 1147899999999999653322 1 223445678899999999999
Q ss_pred hhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-------CceeeeeEEEEec
Q 008909 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFTG 416 (549)
Q Consensus 344 i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~-------gtt~~~~~~~~~~ 416 (549)
++++++.+.. ..++++|.+|+|||||+|++++.....+...+ +||++.....+
T Consensus 111 i~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-- 170 (245)
T TIGR00157 111 LKELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-- 170 (245)
T ss_pred HHHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--
Confidence 9998877632 25789999999999999999987666555443 47887766554
Q ss_pred cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHH
Q 008909 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ 484 (549)
Q Consensus 417 ~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~ 484 (549)
.+ ..|+||||+..+.... .+...+..++..+...-.-|-+-|++| ..+-.+.+...+.+
T Consensus 171 ~~---~~liDtPG~~~~~l~~-----~~~~~~~~~f~e~~~~~~~C~f~~C~H-~~ep~C~v~~a~~~ 229 (245)
T TIGR00157 171 HG---GLIADTPGFNEFGLWH-----LEPEQLTQGFVEFRDYLGECKFRDCLH-QSEPGCAVRQAVEQ 229 (245)
T ss_pred CC---cEEEeCCCccccCCCC-----CCHHHHHHhCHHHHHHhCCCCCCCCcc-CCCCCChHHHHHHc
Confidence 22 2899999998876532 233345666666654434466678877 34445666555544
No 211
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.72 E-value=7.5e-17 Score=152.69 Aligned_cols=171 Identities=24% Similarity=0.348 Sum_probs=126.9
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+...|+++|.||||||||.|.++|.+.+.++....+|++...+.+.-+..++.++||||+.....-...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~--------- 139 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRH--------- 139 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhH---------
Confidence 34578999999999999999999999999999999999999999998888899999999999764332110
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
.+...+.+..+.++.+||++++|+|++.+-......++..+.+. ...|-++|+||+|...+.
T Consensus 140 -----------------~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 140 -----------------HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQK 201 (379)
T ss_pred -----------------HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhh
Confidence 01111223566788999999999999865445555566656543 478999999999976532
Q ss_pred HHh------------------HHHHHH-----------cCC----CceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IMQ------------------VSEFWS-----------LGF----SPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~~------------------~~~~~~-----------~~~----~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
..- ....+. .|+ .+|.+||++|+|++++.+++....+.
T Consensus 202 ~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 202 RLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 110 001000 012 37999999999999999999876654
No 212
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.72 E-value=9.6e-17 Score=152.92 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=103.6
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||+|++++++.. +.....|++..+. ...+... ....+.||||+|+..+..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l-------------- 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNV-------------- 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHH--------------
Confidence 378999999999999999999764 3334444433332 2233321 2346889999999654221
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-H-HHHHHHH--hCCcEEEEEecccCCCCCch-hhh-----HHH-HHHHHHHHh
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-R-IAERIEQ--EGKGCLIVVNKWDTIPNKNQ-QTA-----TYY-EQDVREKLR 519 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~-~l~~l~~--~~~p~ivv~NK~Dl~~~~~~-~~~-----~~~-~~~~~~~l~ 519 (549)
...+++.+|++|+|+|++++.+.+.. . |...+.. .+.|+|||+||+|+...... ... ..+ .++.....+
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak 145 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK 145 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence 11257999999999999987665554 2 4344443 36899999999998643110 000 001 122233333
Q ss_pred cCCCCCEEEEccccCCC-HHHHHHHHHh
Q 008909 520 ALDWAPIVYSTAIAGQS-VDKYVLYLAT 546 (549)
Q Consensus 520 ~~~~~~~i~iSA~~g~~-v~~L~~~l~~ 546 (549)
..+..+|++|||+++.| |+++|+.+..
T Consensus 146 ~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 146 QVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 44445899999999885 9999998875
No 213
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.72 E-value=1.1e-16 Score=153.37 Aligned_cols=154 Identities=15% Similarity=0.181 Sum_probs=100.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.........+....+.....+.. .....+.+|||||+... ...
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--------------~~~- 66 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--------------TED- 66 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--------------HHh-
Confidence 68999999999999999998654321111121111222222222 13457899999999521 111
Q ss_pred HHHHh-cCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 452 FRAIR-RSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 452 ~~~~~-~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
.+++ .+|++++|||++++.+.+.. .++..+.. .++|+|+|+||+|+........ ++..+ +....+.+
T Consensus 67 -~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~-----~~~~~-~a~~~~~~ 139 (221)
T cd04148 67 -SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV-----QEGRA-CAVVFDCK 139 (221)
T ss_pred -HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH-----HHHHH-HHHHcCCe
Confidence 1345 99999999999986544433 35555555 3689999999999876543321 11112 22223458
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||+++|+++.+.+
T Consensus 140 ~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 140 FIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 214
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=1.3e-16 Score=144.51 Aligned_cols=143 Identities=25% Similarity=0.254 Sum_probs=94.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||+|++.+.... . ..|. ...+ .+. .+|||||+.... ........
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~---~v~~---~~~--~~iDtpG~~~~~----------~~~~~~~~ 59 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQ---AVEF---NDK--GDIDTPGEYFSH----------PRWYHALI 59 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccce---EEEE---CCC--CcccCCccccCC----------HHHHHHHH
Confidence 6899999999999999998875321 1 1111 1111 111 269999984321 11233344
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC-CCEEEEcc
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW-APIVYSTA 531 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~-~~~i~iSA 531 (549)
..++.+|++++|+|++++.+......+ .+ ..++|+++++||+|+.... ...+.+.+...+. .|++++||
T Consensus 60 ~~~~~ad~il~v~d~~~~~s~~~~~~~-~~-~~~~~ii~v~nK~Dl~~~~--------~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDPESRLPAGLL-DI-GVSKRQIAVISKTDMPDAD--------VAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred HHHhcCCEEEEEEeCCCcccccCHHHH-hc-cCCCCeEEEEEccccCccc--------HHHHHHHHHHcCCCCCEEEEEC
Confidence 568999999999999876443322222 22 2367999999999985421 1223344444443 58999999
Q ss_pred ccCCCHHHHHHHHHhhh
Q 008909 532 IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~~ 548 (549)
++|.|+++||+++.+.+
T Consensus 130 ~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 130 HDPQSVQQLVDYLASLT 146 (158)
T ss_pred CCccCHHHHHHHHHHhc
Confidence 99999999999998765
No 215
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=2.8e-16 Score=147.77 Aligned_cols=168 Identities=23% Similarity=0.301 Sum_probs=113.8
Q ss_pred CCCCCCeEEEEcCCCCchhhHHHhhhCCC-ceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhh
Q 008909 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 159 ~~~~~~~I~i~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
.....++|+++|++|+|||||+|+|++.. ...+.+.+++|....... + +.++.+|||||+........
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~-------- 88 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKE-------- 88 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCch--------
Confidence 44468899999999999999999999864 456667778777665433 2 46899999999754221110
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
+.. .+.. +..........++++++|+|+..+....+..+..++... +.|+++++||+|+..
T Consensus 89 -------------~~~---~~~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~--~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 89 -------------EKE---KWQK-LIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY--GIPVLIVLTKADKLK 149 (196)
T ss_pred -------------HHH---HHHH-HHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc--CCcEEEEEECcccCC
Confidence 000 1101 111222333456789999998877766665666666544 789999999999875
Q ss_pred hhHHh-----HHHHHH-cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGIMQ-----VSEFWS-LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~~~-----~~~~~~-~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
....+ ...... ...+++++||+++.|+.++++.+...+.
T Consensus 150 ~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 150 KGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 43221 111222 1467899999999999999999887664
No 216
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.72 E-value=5.5e-17 Score=178.55 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=118.3
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+.|.|+|+||+|+|||||+++|++... ..+..+++|.+.....+.+++..+.+|||||+..|..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~------------- 352 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA------------- 352 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccchh-------------
Confidence 45789999999999999999999997653 3455678888887777888889999999999976432
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
...+++..+|++|||+|+.++...+..+.+..+... +.|+++++||+|+....
T Consensus 353 -------------------------m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~--~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 353 -------------------------MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA--GVPIIVAINKIDKPGAN 405 (787)
T ss_pred -------------------------HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc--CCcEEEEEECccccccC
Confidence 223567789999999999988877777777666554 78999999999986432
Q ss_pred HHhHHH-HH---------HcCCCceEeeccCCCChhhhHHHHHH
Q 008909 320 IMQVSE-FW---------SLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 320 ~~~~~~-~~---------~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
...... +. ...++++++||++|.|+.+|++.+..
T Consensus 406 ~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 406 PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 111111 11 11257899999999999999998864
No 217
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.72 E-value=1.1e-16 Score=149.20 Aligned_cols=152 Identities=26% Similarity=0.343 Sum_probs=109.6
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeee---------------cCCCccccceeeeeeeCCceEEEEEcccccccCCCCc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 229 (549)
+|+++|.+|+|||||+|+|++....... ...++|.......+.+.+..+.+|||||+.++.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4899999999999999999876533211 123455555555566677889999999985421
Q ss_pred chhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEE
Q 008909 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (549)
Q Consensus 230 ~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv 309 (549)
..+..++..+|++++|+|+..+.......++..+.. .+.|+++|
T Consensus 77 ----------------------------------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv 120 (189)
T cd00881 77 ----------------------------------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVA 120 (189)
T ss_pred ----------------------------------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEE
Confidence 234456678999999999988776666666666655 38999999
Q ss_pred eccCCCChhh-HH----hHHHHHH---------------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 310 VNKCESPRKG-IM----QVSEFWS---------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 310 ~NK~D~~~~~-~~----~~~~~~~---------------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+||+|+.... .. ....... ...+++++||++|.|+.+++..+...++
T Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 121 INKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred EECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 9999987521 11 1111111 2457899999999999999999987764
No 218
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.72 E-value=9.8e-17 Score=168.77 Aligned_cols=159 Identities=24% Similarity=0.368 Sum_probs=127.2
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
..++++|+||+||||+.|+++|.+ ..+++.||+|.+.....+.+ .+..+.++|.||....... .+.+.+.+-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~------S~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAY------SEDEKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCC------CchHHHHHH
Confidence 358999999999999999999985 78999999999999999886 6677999999999775432 222333333
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
+-.-..+|+++-|+|+++ -+..+.+.-++.+.++|+++++|++|....+.+.+. . +.+++..++|++++||
T Consensus 76 ~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID---~----~~L~~~LGvPVv~tvA 146 (653)
T COG0370 76 FLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID---I----EKLSKLLGVPVVPTVA 146 (653)
T ss_pred HHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc---H----HHHHHHhCCCEEEEEe
Confidence 323367899999999997 456677778899999999999999999876655443 1 3344455689999999
Q ss_pred ccCCCHHHHHHHHHhh
Q 008909 532 IAGQSVDKYVLYLATS 547 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~ 547 (549)
++|.|+++|++.+.+.
T Consensus 147 ~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 147 KRGEGLEELKRAIIEL 162 (653)
T ss_pred ecCCCHHHHHHHHHHh
Confidence 9999999999998764
No 219
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.72 E-value=2.2e-16 Score=142.31 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=104.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+||||++|++++...... ..+.++.+.....+... ....+.+|||||+..+. ...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------------~~~ 66 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR--------------SIT 66 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH--------------HHH
Confidence 689999999999999999998754332 33333333333333321 23578999999985532 123
Q ss_pred HHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|++++-+.+. ..++..+... +.|+++|+||+|+....... .+.+.+.... ...+++
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-----~~~~~~~~~~-~~~~~~ 140 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS-----TEEAQQFAKE-NGLLFF 140 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc-----HHHHHHHHHH-cCCeEE
Confidence 446789999999999987433222 3355566664 49999999999996332222 2233333333 356899
Q ss_pred EEccccCCCHHHHHHHHHh
Q 008909 528 YSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~ 546 (549)
++||++|.|+++++++|.+
T Consensus 141 ~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 141 ETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEecCCCCCHHHHHHHHhC
Confidence 9999999999999999863
No 220
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.72 E-value=1.4e-16 Score=172.54 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=114.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCee--------ec------CCCCceeeeeEEEEecc--CC--CeEEEEeCCCccc
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTI--------VS------PISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIRK 432 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~--------~~------~~~gtt~~~~~~~~~~~--~~--~~i~l~DTpG~~~ 432 (549)
.++++++|+.++|||||+++++...... .. ...|+|.......+.+. ++ .+++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642211 11 12367776554444332 22 5789999999977
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
|.. .+.++++.||++|+|+|++++.+.++...+..+...++|+++|+||+|+..... ....+
T Consensus 83 F~~--------------~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~----~~~~~ 144 (595)
T TIGR01393 83 FSY--------------EVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADP----ERVKK 144 (595)
T ss_pred HHH--------------HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCH----HHHHH
Confidence 632 244578999999999999998888888777666677899999999999864321 12233
Q ss_pred HHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 513 DVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++.+.+. .....++++||++|.|+++|+++|.+.+
T Consensus 145 el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 145 EIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 3444333 2223589999999999999999997653
No 221
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.72 E-value=2.1e-16 Score=149.06 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=102.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
+|+++|.+|+|||||++++++.... .....++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~-------------- 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAM-------------- 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEE-CCEEEEEEEEECCCchhhhHH--------------
Confidence 4789999999999999999986532 22233333333333332 33 47889999998654211
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+... ++..+.+ .++|+++|+||+|+........ .....+........+
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~----~~~~~~~~~~~~~~~ 139 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP----AKDALSTVELDWNCG 139 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc----HHHHHHHHHhhcCCc
Confidence 123678999999999998865545443 3334443 4799999999999865322111 111122222122357
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|+++.+.+
T Consensus 140 ~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 140 FVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998753
No 222
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=1.4e-16 Score=149.43 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=101.6
Q ss_pred ceEEEeCCCCCChhHHHH-HHhcCCC----eeecCCCCce-eeeeEEE---------EeccCCCeEEEEeCCCccchhhh
Q 008909 372 PAIAIVGRPNVGKSSILN-ALVGEDR----TIVSPISGTT-RDAIDTE---------FTGPEGQKFRLIDTAGIRKRAAI 436 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n-~ll~~~~----~~~~~~~gtt-~~~~~~~---------~~~~~~~~i~l~DTpG~~~~~~~ 436 (549)
.+|+++|..|+|||+|+. ++++... +.....|++. .+..... ........+.||||||+.+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 479999999999999996 5554321 2222333321 1221111 11112347899999999531
Q ss_pred ccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHH--HHHHHHHh--CCcEEEEEecccCCCCC----------
Q 008909 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQE--GKGCLIVVNKWDTIPNK---------- 502 (549)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~l~~l~~~--~~p~ivv~NK~Dl~~~~---------- 502 (549)
. ...+++++|++|+|+|++++.+.+... |+..+... +.|+++|+||+|+....
T Consensus 80 -----------~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~ 146 (195)
T cd01873 80 -----------D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred -----------h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccc
Confidence 0 112579999999999999877766653 66666653 68999999999986421
Q ss_pred -------chhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 503 -------NQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 503 -------~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
...+. .++..+..+ ..++++++|||++|.||+++|+.++++
T Consensus 147 ~~~~~~~~~~V~---~~e~~~~a~-~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 147 LARPIKNADILP---PETGRAVAK-ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccCCccC---HHHHHHHHH-HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 11111 222333333 334699999999999999999999875
No 223
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=6.9e-17 Score=173.92 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=115.0
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc-eEEEEEcccccccCCCCcchhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
..+.|+|+++|++|+|||||+++|++... .....+|+|.+.....+.+.+. .+.+|||||+..+..
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~------------ 150 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS------------ 150 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh------------
Confidence 34679999999999999999999998753 3455678888887777777554 899999999976432
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
...+++..+|++++|+|+.++...+..+.+..+... +.|+++++||+|+...
T Consensus 151 --------------------------~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~--~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 151 --------------------------MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA--NVPIIVAINKIDKPEA 202 (587)
T ss_pred --------------------------HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcccccC
Confidence 122567789999999999988877777776665544 7899999999998642
Q ss_pred hHHhHHHHH-H-------c--CCCceEeeccCCCChhhhHHHHHH
Q 008909 319 GIMQVSEFW-S-------L--GFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 319 ~~~~~~~~~-~-------~--~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
......... . + ..+++++||++|.|+.++++.+..
T Consensus 203 ~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 203 NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 211111111 1 1 236899999999999999988854
No 224
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.71 E-value=2e-16 Score=144.96 Aligned_cols=152 Identities=21% Similarity=0.217 Sum_probs=101.0
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
.|+++|.+|+|||||++++.+.......+..|.++ ..+.. ++..+.+|||||+.++.. ...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~----~~~~~-~~~~~~i~D~~G~~~~~~--------------~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP----TKLRL-DKYEVCIFDLGGGANFRG--------------IWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE----EEEEE-CCEEEEEEECCCcHHHHH--------------HHH
Confidence 37899999999999999998752222223333322 23332 567899999999855321 133
Q ss_pred HHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHH--HHHHHhcCC-CC
Q 008909 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQD--VREKLRALD-WA 524 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~--~~~~l~~~~-~~ 524 (549)
.+++.+|++++|||+++..+.+.. .++..+.. .++|++||+||+|+........ +.+. +.+..+... ..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~---i~~~~~l~~~~~~~~~~~ 138 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD---VIEYLSLEKLVNENKSLC 138 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH---HHHhcCcccccCCCCceE
Confidence 578999999999999986444433 34555543 3689999999999976543221 1221 112221222 23
Q ss_pred CEEEEccccC------CCHHHHHHHHHh
Q 008909 525 PIVYSTAIAG------QSVDKYVLYLAT 546 (549)
Q Consensus 525 ~~i~iSA~~g------~~v~~L~~~l~~ 546 (549)
+++++||++| .|+.+.|+||.+
T Consensus 139 ~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 6888999998 899999999975
No 225
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=8.6e-17 Score=154.01 Aligned_cols=200 Identities=27% Similarity=0.277 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhhHHhhcccccchhhhhhhhccccc-cccCCCCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCc
Q 008909 119 DAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKT-TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV 197 (549)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~ 197 (549)
+++.....++.+++.+-++..... ..+..-. ........+..+|+++|.|++|||||+|+|++.+ ..+.+++++
T Consensus 22 KaTe~hig~lKaklA~Lr~El~~~----~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FT 96 (365)
T COG1163 22 KATEHHIGLLKAKLAELREELEKR----KSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFT 96 (365)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhh----hhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCce
Confidence 446666666666655433322221 1111111 2333455678999999999999999999999987 778999999
Q ss_pred cccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEE
Q 008909 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (549)
Q Consensus 198 t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~il 277 (549)
|..+..+.+.++|..++++|+||+......... .++++...+++||+++
T Consensus 97 Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g-------------------------------rG~~vlsv~R~ADlIi 145 (365)
T COG1163 97 TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG-------------------------------RGRQVLSVARNADLII 145 (365)
T ss_pred ecccccceEeecCceEEEEcCcccccCcccCCC-------------------------------CcceeeeeeccCCEEE
Confidence 999999999999999999999998764332211 0134456678888888
Q ss_pred EEEeCCCC------------------------------------------CCcchHHHHHH-HHH---------------
Q 008909 278 FLVDGQAG------------------------------------------LTAADEEIADW-LRK--------------- 299 (549)
Q Consensus 278 lVvD~~~~------------------------------------------~~~~~~~~~~~-l~~--------------- 299 (549)
+|+|...+ ++..+...++. |.+
T Consensus 146 iVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvT 225 (365)
T COG1163 146 IVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVT 225 (365)
T ss_pred EEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCc
Confidence 88884322 22222222211 111
Q ss_pred ----------ccCCCeEEEEeccCCCChhhHHhHHHHHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 300 ----------NYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 300 ----------~~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...-+|.++|+||+|+...+... ........+++||..+.|+++|.+.+++.+.-
T Consensus 226 lDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~---~l~~~~~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 226 LDDLIDALEGNRVYKPALYVVNKIDLPGLEELE---RLARKPNSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred HHHHHHHHhhcceeeeeEEEEecccccCHHHHH---HHHhccceEEEecccCCCHHHHHHHHHHhhCe
Confidence 11235889999999998743322 22233378999999999999999999988753
No 226
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=1.5e-16 Score=149.53 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=99.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeee---------------cCCCccccceeeeeeeCCceEEEEEcccccccCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 227 (549)
..+|+++|++|+|||||+++|++....+.. ...++|.......+.+++..+.+|||||+.++.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~-- 79 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG-- 79 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH--
Confidence 457999999999999999999863211111 124556666556667778889999999986522
Q ss_pred CcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEE
Q 008909 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (549)
Q Consensus 228 ~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (549)
.....++..+|++++|+|++.+.......++..+... +.|++
T Consensus 80 ------------------------------------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~--~~p~i 121 (194)
T cd01891 80 ------------------------------------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPI 121 (194)
T ss_pred ------------------------------------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEE
Confidence 2334567889999999999876544444444444433 78999
Q ss_pred EEeccCCCChhhHH----hHHHHH--------HcCCCceEeeccCCCChhhh
Q 008909 308 LAVNKCESPRKGIM----QVSEFW--------SLGFSPLPISAISGTGTGEL 347 (549)
Q Consensus 308 vv~NK~D~~~~~~~----~~~~~~--------~~~~~~v~vSA~~g~gi~~L 347 (549)
+|+||+|+...... ....++ ..+++++++||++|.|+.++
T Consensus 122 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 122 VVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 99999998643221 112222 12568899999999887544
No 227
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.71 E-value=2.2e-16 Score=148.47 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=104.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+|+|.+|||||||++++++..... ...|.++.......+.++| ..+.+|||||...++.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~----------- 68 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQ----------- 68 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchh-----------
Confidence 379999999999999999999775322 2233333344334456667 45789999998654321100
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc----cCCCeEEEEeccCCCC
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESP 316 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ivv~NK~D~~ 316 (549)
+ ........+..+|++|+|+|++.+.+.... .+...+... ..+.|+++|+||+|+.
T Consensus 69 ---------------e----~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 69 ---------------E----WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred ---------------H----HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 0 001223456889999999999875443322 223333322 2468999999999995
Q ss_pred hhhHHh---HHHHH--HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 317 RKGIMQ---VSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 317 ~~~~~~---~~~~~--~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
...... ...+. ..+.+++++||++|.|+.++++.+...+-
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 130 RHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred ccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 532211 11121 24668899999999999999988876554
No 228
>PLN03108 Rab family protein; Provisional
Probab=99.71 E-value=3.3e-16 Score=148.98 Aligned_cols=156 Identities=17% Similarity=0.079 Sum_probs=105.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++... .....+..+.+.....+...+ ...+.+|||||+.++..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~-~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------------- 70 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------------- 70 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------------
Confidence 35899999999999999999997643 333334333333333333222 23688999999865321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
....+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+...+... .+...+..... +.+
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 144 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-----TEEGEQFAKEH-GLI 144 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC-----HHHHHHHHHHc-CCE
Confidence 123467899999999999886555544 355444433 68999999999997643322 12223333333 458
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++||++|.||+++|.++.+.
T Consensus 145 ~~e~Sa~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 145 FMEASAKTAQNVEEAFIKTAAK 166 (210)
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999888754
No 229
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=9.9e-17 Score=144.32 Aligned_cols=151 Identities=30% Similarity=0.388 Sum_probs=106.7
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+|+++|.+|+|||||++++++.. +.....++++.+.....+.. ++ ..+.+|||||+.++...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~------------- 66 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAI------------- 66 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHH-------------
Confidence 479999999999999999999887 66777788888877655543 44 57889999998654211
Q ss_pred HHHHHHhcCCcEEEEEEcccc-CCHhHH--HHHHHH---HHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMAC-ITEQDC--RIAERI---EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~-~~~~~~--~~l~~l---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
.....+.++.++.++|.... .+..+. .+...+ ...+.|+++|+||+|+.... ........+.....
T Consensus 67 -~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 67 -RRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------LKTHVAFLFAKLNG 138 (161)
T ss_pred -HHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------hhHHHHHHHhhccC
Confidence 11234566777777776553 111111 222222 22278999999999997543 13444555666667
Q ss_pred CCEEEEccccCCCHHHHHHHHH
Q 008909 524 APIVYSTAIAGQSVDKYVLYLA 545 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~ 545 (549)
.+++++||++|.|+.+++++|.
T Consensus 139 ~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 139 EPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CceEEeecCCCCCHHHHHHHhh
Confidence 7899999999999999999875
No 230
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=4.2e-18 Score=140.79 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=109.9
Q ss_pred EEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHH
Q 008909 375 AIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFR 453 (549)
Q Consensus 375 ~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~ 453 (549)
+++|.+++||+.|+-++-......-.-+....+|+....+...+ ..++++|||+|+++|.+++ ..
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt--------------~a 66 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT--------------HA 66 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh--------------Hh
Confidence 36799999999987665433222222233344454433333211 3578999999999987653 34
Q ss_pred HHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEE
Q 008909 454 AIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (549)
Q Consensus 454 ~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 529 (549)
+++.||++++++|+++..+.+.++ |+.+|.++ ...+++++||||+.+.+.... .-.+.+++..+.|++++
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~------ddg~kla~~y~ipfmet 140 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKR------DDGEKLAEAYGIPFMET 140 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcccc------chHHHHHHHHCCCceec
Confidence 789999999999999988888876 77888876 467889999999976544322 12455555667899999
Q ss_pred ccccCCCHHHHHHHHHhh
Q 008909 530 TAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 530 SA~~g~~v~~L~~~l~~~ 547 (549)
|||+|-||+-.|-.|++-
T Consensus 141 saktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred cccccccHhHHHHHHHHH
Confidence 999999999999888764
No 231
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=1.2e-16 Score=147.35 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=100.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..++|+++|.+|+|||||+++|.+.......+ |.......+.+++..+.+|||||...+.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~~---------------- 72 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISP----TLGFQIKTLEYEGYKLNIWDVGGQKTLR---------------- 72 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCC----ccccceEEEEECCEEEEEEECCCCHHHH----------------
Confidence 35789999999999999999999874322222 2233344556677889999999985421
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
.....++..+|++++|+|++.+.+... ..+..++.. ...+.|+++|+||+|+...
T Consensus 73 ----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 73 ----------------------PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 123355778999999999877532221 122222221 2247899999999998653
Q ss_pred hH-HhHHHHH------HcCCCceEeeccCCCChhhhHHHHH
Q 008909 319 GI-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 319 ~~-~~~~~~~------~~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
.. ....... ..+++++++||++|.|+.++++++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 131 LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 21 1122222 1244789999999999999988874
No 232
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.71 E-value=3.9e-16 Score=146.11 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=101.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+++++|.+|+|||||++++.+..... ..+ |.......+. .++..+.+|||||+.++. ..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~--~~~--T~~~~~~~i~-~~~~~~~l~D~~G~~~~~--------------~~ 79 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQ--HVP--TLHPTSEELT-IGNIKFKTFDLGGHEQAR--------------RL 79 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcc--cCC--ccCcceEEEE-ECCEEEEEEECCCCHHHH--------------HH
Confidence 4689999999999999999999765322 222 2222222333 256789999999985431 12
Q ss_pred HHHHHhcCCcEEEEEEccccCCHh-HHHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc-----
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQ-DCRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~-~~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~----- 520 (549)
...+++.+|++++|+|+++.-+.. ...++..+.. .+.|+++|+||+|+..... .+++...+..
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~ 152 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS-------EEELRQALGLYGTTT 152 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcC-------HHHHHHHhCcccccc
Confidence 234678999999999998743222 2234433332 3689999999999864222 1223333321
Q ss_pred ----------CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 ----------LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ----------~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....++++|||++|.|++++|++|.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 153 GKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1224689999999999999999998753
No 233
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.4e-16 Score=134.87 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=108.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..++.++|..|.|||+|+.++...+ +.-.....+.++.-...+.. ....+++||||+|+++|.++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~k-fkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV------------- 74 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENK-FKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV------------- 74 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhh-hcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH-------------
Confidence 3478999999999999999998764 33333333333332222211 12357899999999998764
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
+..+|++|-++++|||++.+.+...+. |+..++.. ++-+|+++||.||...+++... .. ..+.+.+...
T Consensus 75 -tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtfl-----EA-s~FaqEnel~ 147 (214)
T KOG0086|consen 75 -TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFL-----EA-SRFAQENELM 147 (214)
T ss_pred -HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHH-----HH-Hhhhccccee
Confidence 334789999999999999877665554 66555554 5667888999999877665432 12 2334445557
Q ss_pred EEEEccccCCCHHHHHHHHHh
Q 008909 526 IVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~ 546 (549)
++++||++|+||++.|-...+
T Consensus 148 flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred eeeecccccccHHHHHHHHHH
Confidence 899999999999999876654
No 234
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.71 E-value=3.3e-16 Score=145.51 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=98.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++....... ..|++..+.. .+. .++..+.+|||||+.++.. .
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~T~~~~~~--~~~-~~~~~~~l~D~~G~~~~~~--------------~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT--TIPTIGFNVE--TVE-YKNLKFTMWDVGGQDKLRP--------------L 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCccccceE--EEE-ECCEEEEEEECCCCHhHHH--------------H
Confidence 3589999999999999999997554332 2333332221 222 2567899999999955321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHH-H---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc--C--
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIE-Q---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--L-- 521 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~-~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~--~-- 521 (549)
...+++.+|++|+|+|++++-+..+. ..+..+. . ..+|++||+||+|+...... .++...+.. .
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~i~~~l~~~~~~~ 150 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST-------TEVTEKLGLHSVRQ 150 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH-------HHHHHHhCCCcccC
Confidence 23468999999999999874322222 2333332 2 25899999999998643221 112222221 1
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....++++||++|.|++++|++|.+.+
T Consensus 151 ~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 151 RNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 112466899999999999999998653
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=2.9e-16 Score=163.28 Aligned_cols=162 Identities=18% Similarity=0.252 Sum_probs=121.9
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcC------CCe---------eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~------~~~---------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+++++|++++|||||+++|++. ..+ ......|+|++.....+. .++.++.++||||+.+|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHADY 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHHHH
Confidence 44568999999999999999999862 111 011245899988766655 36678999999999543
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEE-EEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
+..+...+..+|++++|+|+.++...++.+.+..+...++|.+ +|+||+|+.... ...+.+..
T Consensus 89 --------------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~~ 152 (396)
T PRK12735 89 --------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM 152 (396)
T ss_pred --------------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHHH
Confidence 3455667889999999999999888888888888888899966 579999997532 22233445
Q ss_pred HHHHHHhcCCC----CCEEEEccccCC----------CHHHHHHHHHhh
Q 008909 513 DVREKLRALDW----APIVYSTAIAGQ----------SVDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~~~~----~~~i~iSA~~g~----------~v~~L~~~l~~~ 547 (549)
++...++..++ .+++++||++|. ++.+|++.|...
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 66667766543 689999999984 678888888754
No 236
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.4e-16 Score=167.56 Aligned_cols=157 Identities=29% Similarity=0.356 Sum_probs=119.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.||||||||+|+|+|.+ ..++++||+|.+...+...+.|..+.++|.||..+......+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------------ 69 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------------ 69 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------------
Confidence 4569999999999999999999987 789999999999999999999999999999999876543211
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhh--hccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~--~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
++.+++++. ..|+++.|+|++. + ..+..+.-.+.+. +.|+++++|++|..++.-
T Consensus 70 --------------------E~Var~~ll~~~~D~ivnVvDAtn-L-eRnLyltlQLlE~--g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 70 --------------------EKVARDFLLEGKPDLIVNVVDATN-L-ERNLYLTLQLLEL--GIPMILALNMIDEAKKRG 125 (653)
T ss_pred --------------------HHHHHHHHhcCCCCEEEEEcccch-H-HHHHHHHHHHHHc--CCCeEEEeccHhhHHhcC
Confidence 123344443 4799999999875 1 1222222233443 899999999999876532
Q ss_pred H---hHHHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 M---QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ~---~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. ...-....|.|++++||++|.|+++++..+.....
T Consensus 126 i~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 126 IRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred CcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 2 12223457899999999999999999998876544
No 237
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=2.4e-16 Score=169.40 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=109.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec--cC---------------CCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--PE---------------GQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~--~~---------------~~~i~l~DTpG~~~ 432 (549)
+.+.|+++|++++|||||+|++++.... .....|+|++.-...+.. .. ...+.+|||||+..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~-~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA-KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc-cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 4568999999999999999999987432 222233454321111110 00 12488999999976
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCch----h---
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ----Q--- 505 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~----~--- 505 (549)
|.. ...++++.+|++++|+|++++...++...+..+...++|+++|+||+|+...... .
T Consensus 82 f~~--------------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 82 FTN--------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred HHH--------------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHH
Confidence 532 1233678999999999999988888888888888889999999999999742110 0
Q ss_pred --------hhHHH---HHHHHHHHhc--------------CCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 506 --------TATYY---EQDVREKLRA--------------LDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 506 --------~~~~~---~~~~~~~l~~--------------~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
+...+ ...+...+.. .+..+++|+||++|.|+++|+.++..
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 00000 0001111221 23468999999999999999998854
No 238
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=4.2e-16 Score=145.11 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=100.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+||||+++++.+.....+. | |.......+. .++.++.+|||||+.++.. .
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~--~--t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~--------------~ 77 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQ--P--TQHPTSEELA-IGNIKFTTFDLGGHQQARR--------------L 77 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccC--C--ccccceEEEE-ECCEEEEEEECCCCHHHHH--------------H
Confidence 468999999999999999999986432222 2 2222222222 2567899999999854321 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc-----
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~----- 520 (549)
...+++.+|++++|+|++++..... ...+..+.+ .++|+++|+||+|+...... +++.+.+.-
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~-------~~i~~~l~l~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE-------DELRYALGLTNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH-------HHHHHHcCCCcccc
Confidence 2346799999999999987532222 223333322 47899999999998643221 222333311
Q ss_pred ------CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 521 ------LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 521 ------~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.....+++|||++|.|+++++++|...
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 123459999999999999999999753
No 239
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=3e-16 Score=149.98 Aligned_cols=158 Identities=22% Similarity=0.252 Sum_probs=110.2
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCee------e-------cCCCCceeeeeE-----------------------EEEec
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTI------V-------SPISGTTRDAID-----------------------TEFTG 416 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~------~-------~~~~gtt~~~~~-----------------------~~~~~ 416 (549)
+++++|+.++|||||++++....... . .-..|.|..... .....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 47899999999999999998532110 0 000122221100 01111
Q ss_pred cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHH--hcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEe
Q 008909 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI--RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVN 494 (549)
Q Consensus 417 ~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~--~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~N 494 (549)
..+..+.++||||++++. ..+...+ +.+|++++|+|+.++.+.++..++.++...++|+++|+|
T Consensus 81 ~~~~~i~liDtpG~~~~~--------------~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvN 146 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL--------------KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVT 146 (224)
T ss_pred eCCcEEEEEECCCcHHHH--------------HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEE
Confidence 246789999999997652 2334445 379999999999999999999999999999999999999
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHhc-------------------------CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 495 KWDTIPNKNQQTATYYEQDVREKLRA-------------------------LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~~~~~l~~-------------------------~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
|+|+..... .......+.+.++. ...+|++++||.+|.|+++|...|..+
T Consensus 147 K~D~~~~~~---~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 147 KIDLAPANI---LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred CccccCHHH---HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 999865322 22334445555542 234589999999999999999988653
No 240
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.70 E-value=2.1e-16 Score=144.29 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=100.9
Q ss_pred EEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHH
Q 008909 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFR 453 (549)
Q Consensus 374 v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~ 453 (549)
|+++|.+|+|||||++++++.. +.....|....+.. .+. ..+.++.+|||||+.++.. ....
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~-~~~~~~pt~g~~~~--~i~-~~~~~l~i~Dt~G~~~~~~--------------~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFNSV--AIP-TQDAIMELLEIGGSQNLRK--------------YWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CcccccccCCcceE--EEe-eCCeEEEEEECCCCcchhH--------------HHHH
Confidence 7899999999999999999764 33333333333222 222 3467899999999966432 1224
Q ss_pred HHhcCCcEEEEEEccccCCHhH-HHHHHHHHH--hCCcEEEEEecccCCCCCchhhhHHHHHHH-HHHHhcCCCCCEEEE
Q 008909 454 AIRRSDVVALVIEAMACITEQD-CRIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDV-REKLRALDWAPIVYS 529 (549)
Q Consensus 454 ~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~i 529 (549)
+++++|++++|+|++++.+... ..++..+.. .++|+++|+||+|+....... .+...+ ...+....+.+++++
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQ---EIHKELELEPIARGRRWILQGT 140 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH---HHHHHhCChhhcCCCceEEEEe
Confidence 6899999999999988543222 234444432 479999999999987654322 111111 122322334578999
Q ss_pred cccc------CCCHHHHHHHHHh
Q 008909 530 TAIA------GQSVDKYVLYLAT 546 (549)
Q Consensus 530 SA~~------g~~v~~L~~~l~~ 546 (549)
||++ ++||+++|+.+..
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHhc
Confidence 9998 9999999998764
No 241
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.70 E-value=3.4e-16 Score=168.18 Aligned_cols=154 Identities=21% Similarity=0.281 Sum_probs=107.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC------------------CceEEEEEcccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------------EHEFMLVDTGGVLN 223 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~liDTpG~~~ 223 (549)
+.|.|+++|++|+|||||+|+|++... ......++|++.....+... ..++.+|||||+..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v-~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV-AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc-ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 578999999999999999999998753 22223345554333222211 12488999999865
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+.. ....++..+|++++|+|++.+...++.+.+..+... +
T Consensus 82 f~~--------------------------------------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~--~ 121 (590)
T TIGR00491 82 FTN--------------------------------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--K 121 (590)
T ss_pred HHH--------------------------------------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc--C
Confidence 322 223466789999999999988888877777777655 7
Q ss_pred CeEEEEeccCCCChhh------------------HHhH---------HHHHH---------------cCCCceEeeccCC
Q 008909 304 KFIILAVNKCESPRKG------------------IMQV---------SEFWS---------------LGFSPLPISAISG 341 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~------------------~~~~---------~~~~~---------------~~~~~v~vSA~~g 341 (549)
.|+++++||+|+.... .... ..+.. ...+++++||++|
T Consensus 122 vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG 201 (590)
T TIGR00491 122 TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG 201 (590)
T ss_pred CCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC
Confidence 8999999999986310 0000 00111 1247899999999
Q ss_pred CChhhhHHHHHHHhh
Q 008909 342 TGTGELLDLVCSELK 356 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~ 356 (549)
+|+++|+.++....+
T Consensus 202 eGideLl~~l~~l~~ 216 (590)
T TIGR00491 202 EGIPELLTMLAGLAQ 216 (590)
T ss_pred CChhHHHHHHHHHHH
Confidence 999999988765443
No 242
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.70 E-value=3.1e-16 Score=143.34 Aligned_cols=145 Identities=23% Similarity=0.335 Sum_probs=96.4
Q ss_pred cEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hHHHHHHcCCCceEe-eccC-----------
Q 008909 274 CVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFWSLGFSPLPI-SAIS----------- 340 (549)
Q Consensus 274 d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~~~~~~~v~v-SA~~----------- 340 (549)
|++++|+|++.++...+..+.+.+.-...++|+++|+||+|+.++... ....++...+..+.+ |+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 789999999999888887877774211137899999999999865432 233344333333332 2221
Q ss_pred --------------CCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCce
Q 008909 341 --------------GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT 406 (549)
Q Consensus 341 --------------g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt 406 (549)
+.|.+.++..+.++.. ........+++++|.+|+||||++|++++...+.+++.||+|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T 152 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSR--------NKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT 152 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhh--------ccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence 1122222222211111 011123468999999999999999999999888999999999
Q ss_pred eeeeEEEEeccCCCeEEEEeCCCc
Q 008909 407 RDAIDTEFTGPEGQKFRLIDTAGI 430 (549)
Q Consensus 407 ~~~~~~~~~~~~~~~i~l~DTpG~ 430 (549)
++...... +.++.++||||+
T Consensus 153 ~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 153 KSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred cceEEEEe----CCCEEEEECcCC
Confidence 98765443 246899999996
No 243
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-16 Score=160.85 Aligned_cols=166 Identities=33% Similarity=0.372 Sum_probs=125.3
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.-+.|+|+|+||||||||+|+|......++++.+|+|++.....+.++|.++.|+||+|+.+.+. ...+.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~~------ 337 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEAL------ 337 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHHH------
Confidence 35899999999999999999999999999999999999999999999999999999999976221 112211
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc----------CCCeEEEEec
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----------MDKFIILAVN 311 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~----------~~~p~ivv~N 311 (549)
| ..++.+.+..+|++++|+|+....+..+..+.+.+.... ...+++++.|
T Consensus 338 ---g-----------------I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~n 397 (531)
T KOG1191|consen 338 ---G-----------------IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVAN 397 (531)
T ss_pred ---h-----------------HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEec
Confidence 1 146677889999999999997767777777666655421 2368899999
Q ss_pred cCCCChhh-HHhH--HHHHH----cCCCc-eEeeccCCCChhhhHHHHHHHhh
Q 008909 312 KCESPRKG-IMQV--SEFWS----LGFSP-LPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 312 K~D~~~~~-~~~~--~~~~~----~~~~~-v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
|.|+...- .... ..+.. ..+++ +.+|+++++|+..|.+.+.+.+.
T Consensus 398 k~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 398 KSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred hhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 99987641 1110 11111 12344 45999999999999988876654
No 244
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.70 E-value=5.5e-16 Score=140.41 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=104.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+|||||++++++.. + ......++.+.....+...+ ...+.+||+||+.++.. ..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-F-VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA--------------MR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-C-CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH--------------HH
Confidence 47899999999999999999865 3 23334444454444444322 35788999999855321 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+....... .+.+.+.....+ .++
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-----~~~~~~~~~~~~-~~~ 138 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS-----KEEGKALAKEWG-CPF 138 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec-----HHHHHHHHHHcC-CcE
Confidence 34578999999999998754433332 3444433 369999999999997633322 223333444333 689
Q ss_pred EEEccccCCCHHHHHHHHHhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++||++|.|+++++++|.+.
T Consensus 139 ~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 139 IETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEeccCCCCCHHHHHHHHHhh
Confidence 999999999999999999864
No 245
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.70 E-value=3.7e-16 Score=141.98 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=104.6
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|++|+|||||+++|++.+.. ....++.+.+.....+.+++. .+.+|||||...+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------------- 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR----------------- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-----------------
Confidence 7999999999999999999987633 345566666666666666663 58899999964321
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~ 320 (549)
......+..+|++++|+|...+.+.... .++..+.. ...+.|+++++||+|+.....
T Consensus 64 ---------------------~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 64 ---------------------SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred ---------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc
Confidence 1233557889999999998765333322 22333322 223589999999999843221
Q ss_pred ---HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 321 ---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 321 ---~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
..... ....+.+++++||+++.|++++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 123 VSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 11111 22345788999999999999999998754
No 246
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=4.3e-16 Score=146.59 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=120.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecC-CCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSP-ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~-~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+||||++|+++|.+.+.+.. .+++|+........ +++.++.++||||+.+... .............
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~---~~~~~~~~i~~~~ 77 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSV---SPEQLSKEIVRCL 77 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccC---ChHHHHHHHHHHH
Confidence 68999999999999999999987765553 45777776665554 3788999999999977431 0011222333333
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh-----CCcEEEEEecccCCCCCchhhh-HHHHHHHHHHHhcCCCCC
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTA-TYYEQDVREKLRALDWAP 525 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 525 (549)
....+++|++|+|+|+.+ ++..+...++.+++. ..++|+|+|++|.+........ ......++..++.+++ .
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-r 155 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-R 155 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-e
Confidence 444578999999999988 899999998888775 3689999999998765432211 1112345666666554 5
Q ss_pred EEEEc-----cccCCCHHHHHHHHHhhh
Q 008909 526 IVYST-----AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iS-----A~~g~~v~~L~~~l~~~~ 548 (549)
++.++ +..+.++++|++.|.+++
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 55554 456889999999998865
No 247
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=1.3e-16 Score=145.97 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=100.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCce---eeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
+|+++|++|+|||||+++|.+.... ........|.....+.+.+++..+.+|||||+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------------- 64 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR---------------- 64 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH----------------
Confidence 4889999999999999999864321 112233445555666777888999999999985421
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHH-HHHHH-ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIA-DWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~-~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++++|+|+..+...... ..+ ..+.. ...+.|+++++||+|+...
T Consensus 65 ----------------------~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 65 ----------------------SLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 1233567889999999998764221111 111 22221 1247899999999998653
Q ss_pred hHH-hHHHHHH--------cCCCceEeeccCCCChhhhHHHHHH
Q 008909 319 GIM-QVSEFWS--------LGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 319 ~~~-~~~~~~~--------~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
... ....+.. .+.+++++||++|.|++++++++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 211 1111111 2346899999999999999988753
No 248
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.70 E-value=4.6e-16 Score=144.27 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=101.8
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||++++++.. +.....| ++.+.....+... .+..+.+|||||+.++.. .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------~ 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-FVESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI--------------L 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CccccCc-chhhhEEEEEEECCEEEEEEEEECCChHhhHH--------------H
Confidence 478999999999999999999764 3222333 3333222223221 134578999999965421 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...++..+|++++|+|+++....+... ++..+.+ .+.|+|+|+||+|+...+... ........... +.+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 139 (180)
T cd04137 66 PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVS-----TEEGKELAESW-GAA 139 (180)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccC-----HHHHHHHHHHc-CCe
Confidence 223578999999999999854444433 3344433 367999999999986533222 11122222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+.++++++.+.+
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 140 FLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998653
No 249
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.69 E-value=3e-16 Score=171.21 Aligned_cols=154 Identities=20% Similarity=0.308 Sum_probs=114.2
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee----CCceEEEEEcccccccCCCCcchhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW----GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~i~ 236 (549)
.+.|.|+|+|++|+|||||+++|++.... ....+++|.+.....+.+ .+..+.+|||||+..+.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~----------- 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS----------- 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH-----------
Confidence 46799999999999999999999977533 344567777665544443 24789999999986532
Q ss_pred hhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCC
Q 008909 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 237 ~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
....+++..+|++|+|+|+..+...+..+.+..+... +.|+++++||+|+.
T Consensus 310 ---------------------------~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~--~iPiIVViNKiDl~ 360 (742)
T CHL00189 310 ---------------------------SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA--NVPIIVAINKIDKA 360 (742)
T ss_pred ---------------------------HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc--CceEEEEEECCCcc
Confidence 2333677889999999999988877777777766554 78999999999987
Q ss_pred hhhHHhHHHHH--------HcC--CCceEeeccCCCChhhhHHHHHHHh
Q 008909 317 RKGIMQVSEFW--------SLG--FSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 317 ~~~~~~~~~~~--------~~~--~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
..........+ ..+ ++++++||++|.|+.+|++.+....
T Consensus 361 ~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 361 NANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 53322111111 112 5789999999999999999887653
No 250
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.69 E-value=2.3e-16 Score=144.20 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=102.3
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++.+.... ....+..+.+.....+.+.+. .+.+|||||...+.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------------- 65 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---------------- 65 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH----------------
Confidence 57999999999999999999976532 222333333444444555553 57899999975421
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~~ 319 (549)
......+..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+....
T Consensus 66 ----------------------~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 66 ----------------------TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred ----------------------HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 1223556789999999998764322221 1222233222 368999999999986432
Q ss_pred HH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. .... ....+.+++++||++|.|+.+++..+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 124 VVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 11 1111 1234678999999999999999999877653
No 251
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=1.5e-16 Score=151.09 Aligned_cols=144 Identities=26% Similarity=0.322 Sum_probs=100.5
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeee------------------------------cCCCccccceeeeeeeCCceEE
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV------------------------------DEPGVTRDRMYGRSFWGEHEFM 214 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~ 214 (549)
+|+|+|++|+|||||+++|++....... ...|+|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999765333221 1267788888888888899999
Q ss_pred EEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHH
Q 008909 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (549)
Q Consensus 215 liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~ 294 (549)
+|||||+.++. ..+...+..+|++|+|+|++.+...+.....
T Consensus 81 liDTpG~~~~~--------------------------------------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~ 122 (208)
T cd04166 81 IADTPGHEQYT--------------------------------------RNMVTGASTADLAILLVDARKGVLEQTRRHS 122 (208)
T ss_pred EEECCcHHHHH--------------------------------------HHHHHhhhhCCEEEEEEECCCCccHhHHHHH
Confidence 99999985321 1233567889999999999887766665555
Q ss_pred HHHHHccCCCeEEEEeccCCCChhhH---Hh----HHHH-HHcCC---CceEeeccCCCChhhh
Q 008909 295 DWLRKNYMDKFIILAVNKCESPRKGI---MQ----VSEF-WSLGF---SPLPISAISGTGTGEL 347 (549)
Q Consensus 295 ~~l~~~~~~~p~ivv~NK~D~~~~~~---~~----~~~~-~~~~~---~~v~vSA~~g~gi~~L 347 (549)
.++... ...++++|+||+|+..... .. ...+ ...++ +++++||++|.|+.+.
T Consensus 123 ~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 123 YILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 555443 1245778999999864211 11 1111 12333 4899999999998753
No 252
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=5e-16 Score=167.77 Aligned_cols=158 Identities=23% Similarity=0.269 Sum_probs=119.8
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCee-----e----------cCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhh
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTI-----V----------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~-----~----------~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~ 436 (549)
++|+++|+.++|||||+++++...... + ....|+|+......+. +++.++++|||||+.+|.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~DF~-- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHADFG-- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHHHH--
Confidence 479999999999999999998632111 0 1123677776655555 478899999999997763
Q ss_pred ccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHH
Q 008909 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (549)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 516 (549)
..+.++++.+|++++|||+.++...+...++..+...++|+|+|+||+|+....... +..++..
T Consensus 79 ------------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~----v~~ei~~ 142 (594)
T TIGR01394 79 ------------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDE----VVDEVFD 142 (594)
T ss_pred ------------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHH----HHHHHHH
Confidence 234567899999999999999888999999999999999999999999986543222 2344444
Q ss_pred HHhc------CCCCCEEEEccccCC----------CHHHHHHHHHhhh
Q 008909 517 KLRA------LDWAPIVYSTAIAGQ----------SVDKYVLYLATSF 548 (549)
Q Consensus 517 ~l~~------~~~~~~i~iSA~~g~----------~v~~L~~~l~~~~ 548 (549)
.+.. ....|++++||++|. |+..||+.|...+
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 4432 123589999999996 7999999987653
No 253
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.69 E-value=1.9e-16 Score=148.98 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=105.1
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.|+++|..|||||||++++....+. ....+..+.+.....+.+++ ..+.+|||+|...+..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~---------------- 64 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS---------------- 64 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH----------------
Confidence 5899999999999999999976421 11223333444455566776 4578999999865322
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc-cCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~-~~~~p~ivv~NK~D~~~~~~ 320 (549)
....+++.+|++|+|+|.+++.+..... +...+... ..+.|+++|+||+|+.....
T Consensus 65 ----------------------l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 65 ----------------------ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred ----------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 2336678999999999998765444332 33334332 24689999999999864322
Q ss_pred H---hHHHHH-H-cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 M---QVSEFW-S-LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ~---~~~~~~-~-~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. ....+. . .++.++++||++|.|+.+++..+...+.
T Consensus 123 v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 123 ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 112222 2 2567899999999999999999887664
No 254
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=3.4e-16 Score=142.62 Aligned_cols=152 Identities=15% Similarity=0.115 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||++++++... ...+.+++.........+++. .+.+|||||..++..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA--------------- 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH---------------
Confidence 5899999999999999999997642 334444444433444455554 578899999865321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++++|+|.+.+.+.... .+...+.+ ...+.|+++++||+|+...
T Consensus 66 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 66 -----------------------MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred -----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 223556789999999998764332221 12222222 1236799999999998653
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.. .....+ ...+.+++++||++|.|+.++++.+...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 123 RKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 21 111122 23467899999999999999999887654
No 255
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.6e-16 Score=141.12 Aligned_cols=158 Identities=19% Similarity=0.174 Sum_probs=110.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|..|||||||+-++....+.. ...+.+-.......+.+++ .++.+|||+|++++..+-+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap----------- 72 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP----------- 72 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcccc-ccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccc-----------
Confidence 5689999999999999999998665221 1122222333344455555 5678999999998665443
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~ 318 (549)
.+++.++.+|+|+|+++.-+.... .++..|.+.. .+.-+.+|+||+|+...
T Consensus 73 ---------------------------MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 73 ---------------------------MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred ---------------------------ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 567899999999999875444332 2344444432 34556779999999874
Q ss_pred hHHhHH---H-HHHcCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 319 GIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 319 ~~~~~~---~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
...... . ....++.++++||++|.|+.+++..|.+.++...
T Consensus 126 R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 126 REVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred ccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 433322 2 2346889999999999999999999999887644
No 256
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=2.5e-16 Score=142.97 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+|+|++... ...+.+++.......+.+++. .+.+|||||...+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------------- 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH---------------
Confidence 4799999999999999999997652 223333333333444555554 367899999754221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
....++..++++++|+|..+..+..... +...+.+. ..+.|+++|+||+|+...
T Consensus 65 -----------------------l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 65 -----------------------MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred -----------------------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2235677899999999987643322221 22223221 247899999999998653
Q ss_pred hHH--hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIM--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~--~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... ....+ ...+.+++++||++|.|++++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 122 TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 211 11112 23466899999999999999999887543
No 257
>PRK00049 elongation factor Tu; Reviewed
Probab=99.69 E-value=5.5e-16 Score=161.01 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=122.9
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC------Ce---------eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED------RT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~------~~---------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+++++|+.++|||||+++|++.. .. ......|+|++.....+. .++.++.++||||+.+|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHHHH
Confidence 345689999999999999999998731 00 011246899998766654 36778999999999553
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEE-EEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
...+...+..+|++++|+|+..+...++.+++..+...++|.+ +++||+|+.... ...+.+..
T Consensus 89 --------------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~--~~~~~~~~ 152 (396)
T PRK00049 89 --------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM 152 (396)
T ss_pred --------------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH--HHHHHHHH
Confidence 3345566789999999999999999999999999999999976 579999997522 22233455
Q ss_pred HHHHHHhcCCC----CCEEEEccccCC----------CHHHHHHHHHhh
Q 008909 513 DVREKLRALDW----APIVYSTAIAGQ----------SVDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~~~~----~~~i~iSA~~g~----------~v~~L~~~l~~~ 547 (549)
++...++..++ .+++++||++|. ++..|++.|...
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 67777776543 689999999875 577888888753
No 258
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=5.1e-16 Score=140.05 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=99.9
Q ss_pred EEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHH
Q 008909 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFR 453 (549)
Q Consensus 374 v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~ 453 (549)
|+++|.+|+|||||+|++.+.. +.....|++..+... .. .++..+.+|||||+.++.. ....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~--~~-~~~~~~~~~D~~g~~~~~~--------------~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMRK--VT-KGNVTLKVWDLGGQPRFRS--------------MWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceEE--EE-ECCEEEEEEECCCCHhHHH--------------HHHH
Confidence 7899999999999999999875 334444544444332 22 2456899999999855321 2334
Q ss_pred HHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 454 AIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 454 ~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+....... .....+..........++++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD---ELIEQMNLKSITDREVSCYS 140 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH---HHHHHhCcccccCCceEEEE
Confidence 6789999999999987432221 223333322 478999999999987543221 11111110001112357899
Q ss_pred EccccCCCHHHHHHHHHhh
Q 008909 529 STAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~ 547 (549)
+||++|.|+++++++|.++
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~ 159 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIKH 159 (159)
T ss_pred EEeccCCChHHHHHHHhhC
Confidence 9999999999999999763
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.69 E-value=2.4e-16 Score=148.33 Aligned_cols=168 Identities=19% Similarity=0.225 Sum_probs=116.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeec-CCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVD-EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.+|+++|.+|+|||||+|+|+|...+.... .+++|..++.+...+.|..+.+|||||+.+.......+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~----------- 69 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQL----------- 69 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHH-----------
Confidence 479999999999999999999987554443 45889999998888899999999999998754322111
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccC---CCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~---~~p~ivv~NK~D~~~~~ 319 (549)
...+.+.+.......|++|+|+++.. ++..+...++.+.+.+. -.++++++|++|.....
T Consensus 70 ----------------~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 70 ----------------SKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred ----------------HHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 11222333344566899999999887 78788888888876432 25788999999876432
Q ss_pred H-H--------hHHHHHH-cCCCceEe-----eccCCCChhhhHHHHHHHhhhhc
Q 008909 320 I-M--------QVSEFWS-LGFSPLPI-----SAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 320 ~-~--------~~~~~~~-~~~~~v~v-----SA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
. . ....... .+-.++.+ ++..+.++.+|++.+.+.++.+.
T Consensus 133 ~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 133 TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 1 0 1111111 12223233 35667888999999988887643
No 260
>PRK12289 GTPase RsgA; Reviewed
Probab=99.69 E-value=3e-16 Score=158.70 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=118.7
Q ss_pred HHhhhccEEEEEEeCCCCCCcchHHHHHHHHH-ccCCCeEEEEeccCCCChhhH-HhHH-HHHHcCCCceEeeccCCCCh
Q 008909 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI-MQVS-EFWSLGFSPLPISAISGTGT 344 (549)
Q Consensus 268 ~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~-~~~~-~~~~~~~~~v~vSA~~g~gi 344 (549)
..+.++|.+++|+|+..+.. ....+.+++.. ...+.|+++|+||+|+..... .... .+...++.++++||+++.|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 85 PPVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 45789999999999875432 22233333332 124789999999999975432 2222 23456888999999999999
Q ss_pred hhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCC-------ceeeeeEEEEecc
Q 008909 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTGP 417 (549)
Q Consensus 345 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~g-------tt~~~~~~~~~~~ 417 (549)
++|++.+.. ..++++|.+|+|||||+|+|++.....+...++ ||++.....+ .
T Consensus 164 ~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~ 223 (352)
T PRK12289 164 EALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--P 223 (352)
T ss_pred HHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--C
Confidence 998887732 136999999999999999999988788888887 8888754433 2
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcC--CcEEEEEEccc
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRS--DVVALVIEAMA 469 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~a--d~~llVvD~~~ 469 (549)
+|. .|+||||+..+... .....+...+..++.. ..-|-+-|+.|
T Consensus 224 ~g~--~liDTPG~~~~~l~------~~~~~l~~~F~e~~~~~~~~~CrF~dC~H 269 (352)
T PRK12289 224 NGG--LLADTPGFNQPDLD------CSPRELAHYFPEARQRLAQGNCQFNDCLH 269 (352)
T ss_pred CCc--EEEeCCCccccccc------cCHHHHHhhHHHHHHhHhhCceEccCCcc
Confidence 332 89999999887652 1122234444444331 23456667776
No 261
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.69 E-value=8.2e-16 Score=148.37 Aligned_cols=114 Identities=25% Similarity=0.241 Sum_probs=88.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeee-----c------------CCCCceeeeeEEEEeccCCCeEEEEeCCCccchhh
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIV-----S------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~-----~------------~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~ 435 (549)
+|+++|+.|+|||||.++++....... . ...|+|.......+. +++.++++|||||+.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccchH-
Confidence 478999999999999999986432211 0 112444444444444 467899999999997652
Q ss_pred hccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
..+..+++.+|++++|+|++++...+...++..+...++|+++++||+|+...
T Consensus 79 -------------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a 131 (237)
T cd04168 79 -------------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA 131 (237)
T ss_pred -------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC
Confidence 23456789999999999999998888888999998899999999999998753
No 262
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=8.6e-16 Score=161.00 Aligned_cols=162 Identities=18% Similarity=0.239 Sum_probs=119.9
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcC------CCee---------ecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRTI---------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~------~~~~---------~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+|+++|+.++|||||+++|++. .... .....|+|++.....+.. ++.++.++||||+.+|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY 137 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch
Confidence 34568999999999999999999732 1111 112369999987777653 6678999999999664
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
+..+...+..+|++++|+|+.++...++.+.+..+...++| +|+|+||+|+..... ..+.+..
T Consensus 138 --------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~--~~~~i~~ 201 (447)
T PLN03127 138 --------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE--LLELVEM 201 (447)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH--HHHHHHH
Confidence 33445566789999999999999999999999999999999 577899999975322 2233444
Q ss_pred HHHHHHhcCCC----CCEEEEccc---cCCC-------HHHHHHHHHhh
Q 008909 513 DVREKLRALDW----APIVYSTAI---AGQS-------VDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~~~~----~~~i~iSA~---~g~~-------v~~L~~~l~~~ 547 (549)
++.+.+...++ .+++++||+ +|.| +.+|++.+...
T Consensus 202 ~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 202 ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 56666655433 689999876 4555 78888887754
No 263
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.69 E-value=3.1e-16 Score=143.52 Aligned_cols=152 Identities=16% Similarity=0.099 Sum_probs=100.2
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeee--eeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGR--SFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
+|+++|.+|||||||+++++..... ..+ ..|....... +..++ ..+.+|||||...+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE--KKY-VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR------------ 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCC-CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc------------
Confidence 7999999999999999999854321 111 1222222222 22233 467899999986543321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
...+..+|++|+|+|.+.+.+.... .+...+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 67 --------------------------DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred --------------------------HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc
Confidence 1345679999999998875444332 2334444443479999999999986433
Q ss_pred HHh-HHHHH-HcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IMQ-VSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~~-~~~~~-~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ...+. ..+.+++++||++|.|++++++.+.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 121 VKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 211 11222 345578999999999999999999877654
No 264
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.69 E-value=3.4e-16 Score=142.44 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=101.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++.+... ...+..++.......+.+++. .+.+|||||...+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA--------------- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch---------------
Confidence 5799999999999999999997642 233344444444445556664 467899999865332
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
....++..+|++++|+|...+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 65 -----------------------MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred -----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 122456789999999998764433222 223333321 246899999999998643
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
... ....+ ...+.+++++||++|.|+.+++..+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 122 RVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 211 11111 2335678999999999999999988754
No 265
>PRK12288 GTPase RsgA; Reviewed
Probab=99.69 E-value=3.5e-16 Score=158.24 Aligned_cols=186 Identities=23% Similarity=0.286 Sum_probs=125.9
Q ss_pred hhhccEEEEEEeCCCCCCcchHHHHHHHHH-ccCCCeEEEEeccCCCChhhH----HhH-HHHHHcCCCceEeeccCCCC
Q 008909 270 IEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI----MQV-SEFWSLGFSPLPISAISGTG 343 (549)
Q Consensus 270 i~~~d~illVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~----~~~-~~~~~~~~~~v~vSA~~g~g 343 (549)
++++|.+++|++....++... +-+|+.. ...+.|+++|+||+|+.+... ... ..+...+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~--Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNI--IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHH--HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 578999999998764444332 2223221 124789999999999976431 111 22335678999999999999
Q ss_pred hhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCC-------ceeeeeEEEEec
Q 008909 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (549)
Q Consensus 344 i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~g-------tt~~~~~~~~~~ 416 (549)
+++|++.+... .++++|.+|+|||||+|+|++.....+...++ ||+......+.
T Consensus 196 ideL~~~L~~k------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~- 256 (347)
T PRK12288 196 LEELEAALTGR------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP- 256 (347)
T ss_pred HHHHHHHHhhC------------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec-
Confidence 99988887421 36899999999999999999987777776663 66665544442
Q ss_pred cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh
Q 008909 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE 485 (549)
Q Consensus 417 ~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~ 485 (549)
.| ..|+||||+..+.++. .....+..++..+...-.-|-+-|++|. .+-.+.+...+...
T Consensus 257 -~~--~~liDTPGir~~~l~~-----~~~~~l~~~F~ei~~~~~~CrF~dC~H~-~EpgCaV~~Av~~g 316 (347)
T PRK12288 257 -HG--GDLIDSPGVREFGLWH-----LEPEQVTQGFVEFRDYLGTCKFRDCKHD-DDPGCALREAVEEG 316 (347)
T ss_pred -CC--CEEEECCCCCcccCCC-----CCHHHHHHhhHHHHHHhcCCCCCCCccC-CCCCChHHHHHHcC
Confidence 22 2699999999987642 2233466677666544344666788873 34456666555443
No 266
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=2.7e-16 Score=144.14 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=97.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.+|||||||+++|........ .| |.......+...+..+.+|||||...+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~--t~g~~~~~~~~~~~~~~l~Dt~G~~~~~----------------- 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT--IP--TVGFNVETVTYKNVKFNVWDVGGQDKIR----------------- 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc--cC--CcccceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 57899999999999999999986543222 22 2222233445567789999999985421
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....++..+|++|+|+|++.+.+... ..+...+.. ...+.|+++|+||+|+....
T Consensus 68 ---------------------~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (168)
T cd04149 68 ---------------------PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126 (168)
T ss_pred ---------------------HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence 123356788999999999887533221 122223322 12468999999999986421
Q ss_pred -HHhHHHHHH------cCCCceEeeccCCCChhhhHHHHH
Q 008909 320 -IMQVSEFWS------LGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 320 -~~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
..+...+.. ..+.++++||++|.|+.++++++.
T Consensus 127 ~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 127 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 111222211 123578999999999999998875
No 267
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.69 E-value=1.7e-16 Score=144.39 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=98.7
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC----CceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG----EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
+|+++|.+|+|||||++++++.... ....+....+.....+.+. ...+.+|||||...+..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------------- 66 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA-------------- 66 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH--------------
Confidence 6999999999999999999976421 1112222223222333443 34689999999754221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....++.+|++++|+|...+.+.... .+...+.+...+.|+++|+||+|+....
T Consensus 67 ------------------------~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 67 ------------------------ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred ------------------------hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc
Confidence 233567889999999998764332221 1223333334578999999999986532
Q ss_pred HH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHH
Q 008909 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 320 ~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
.. .... ....+++++++||++|.|+++++..+..
T Consensus 123 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 123 VITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 21 1111 2235678999999999999999988864
No 268
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=146.74 Aligned_cols=164 Identities=22% Similarity=0.298 Sum_probs=121.7
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+.+++.|.||+|||||++.+.+.+ ..+.++|+||.....+.+.+ ++.+++++||||+.+...-. .+.+|..
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~E--rN~IE~q-- 239 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEE--RNEIERQ-- 239 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHH--hcHHHHH--
Confidence 456789999999999999999999886 78999999999998888875 67799999999998865421 1233332
Q ss_pred HHHHHHH-hcCCcEEEEEEccc--cCC-HhHHHHHHHHHHh-CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAI-RRSDVVALVIEAMA--CIT-EQDCRIAERIEQE-GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~-~~ad~~llVvD~~~--~~~-~~~~~~l~~l~~~-~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
+..++ .-.++++|++|.+. +++ +.+..+++.+... ..|+++|+||+|...... .+++...+...++
T Consensus 240 --Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~-------~~~~~~~~~~~~~ 310 (346)
T COG1084 240 --AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEK-------LEEIEASVLEEGG 310 (346)
T ss_pred --HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhH-------HHHHHHHHHhhcc
Confidence 22233 34567999999986 444 5556678888876 579999999999875332 2333344555555
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.....+++..+.+++.+.+.+...
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHH
Confidence 557888999999999888766543
No 269
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=5e-16 Score=161.61 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=118.8
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcC------CCee---------ecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRTI---------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~------~~~~---------~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+|+++|+.++|||||+++|++. ..+. .....|+|++.....+. .++.++.+|||||+++|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHHH
Confidence 34568999999999999999999842 1111 11235899998766664 35678999999999664
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEE-EEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
...+...+..+|++++|+|+.++...++.+.+..+...++|.+ +|+||+|+..... ..+.+.+
T Consensus 89 --------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~--~~~~~~~ 152 (394)
T TIGR00485 89 --------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE--LLELVEM 152 (394)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHH--HHHHHHH
Confidence 2345566789999999999999888999999999988899866 5899999975322 2233345
Q ss_pred HHHHHHhcCCC----CCEEEEccccCC--------CHHHHHHHHHh
Q 008909 513 DVREKLRALDW----APIVYSTAIAGQ--------SVDKYVLYLAT 546 (549)
Q Consensus 513 ~~~~~l~~~~~----~~~i~iSA~~g~--------~v~~L~~~l~~ 546 (549)
++.+.++..++ .+++++||++|. ++.+|++.+..
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred HHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 66677766543 789999999875 34566666543
No 270
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.69 E-value=6.9e-16 Score=148.70 Aligned_cols=157 Identities=23% Similarity=0.228 Sum_probs=112.4
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|.+|+|||||+|+|++.. ..+..++++|.++..+.+.+++..+.+|||||+.+......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~--------------- 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK--------------- 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch---------------
Confidence 68999999999999999999876 45778899999999998889999999999999865322110
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCc------------------------------------
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA------------------------------------ 288 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~------------------------------------ 288 (549)
.+.+++...+.++|++++|+|++.+...
T Consensus 66 ----------------~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~ 129 (233)
T cd01896 66 ----------------GRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITS 129 (233)
T ss_pred ----------------hHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEec
Confidence 0123445667889999999987543210
Q ss_pred ------chHHHHH-HHHHc-------------------------cCCCeEEEEeccCCCChhhHHhHHHHHHcCCCceEe
Q 008909 289 ------ADEEIAD-WLRKN-------------------------YMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPI 336 (549)
Q Consensus 289 ------~~~~~~~-~l~~~-------------------------~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~v 336 (549)
.+.+.++ .|.+. ....|+++|+||+|+....... .+....+++++
T Consensus 130 ~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~---~~~~~~~~~~~ 206 (233)
T cd01896 130 TVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD---LLARQPNSVVI 206 (233)
T ss_pred cCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---HHhcCCCEEEE
Confidence 1111111 11111 1235889999999997654333 23334568999
Q ss_pred eccCCCChhhhHHHHHHHhh
Q 008909 337 SAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 337 SA~~g~gi~~L~~~i~~~l~ 356 (549)
||++|.|++++++.+++.+.
T Consensus 207 SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 207 SAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999987664
No 271
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.69 E-value=4.1e-16 Score=145.33 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=107.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|..|||||||+.++...... ....+..+.+.....+.+++ ..+.+|||+|...+..
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------------- 70 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT-------------- 70 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH--------------
Confidence 578999999999999999999975421 11112233344444556666 4578899999865322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
....++..+|++|+|+|.+.+.+..... +...+.....+.|+++|+||+|+....
T Consensus 71 ------------------------l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~ 126 (189)
T cd04121 71 ------------------------IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126 (189)
T ss_pred ------------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc
Confidence 2335668899999999998765544432 344454444688999999999986432
Q ss_pred H---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
. .+...+ ...+++++++||++|.|+++++..+.+.+..
T Consensus 127 ~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred CCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1 122222 2356789999999999999999999876643
No 272
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.69 E-value=5.7e-16 Score=144.65 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=102.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+++++|.+|+|||||+++++.... .....+ ++.+.....+...+ ...+.+|||||+.++... .
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~------------~-- 66 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHP-TVFENYVTDCRVDGKPVQLALWDTAGQEEYERL------------R-- 66 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCC-cccceEEEEEEECCEEEEEEEEECCCChhcccc------------c--
Confidence 789999999999999999985432 222223 33333333333211 235789999998654211 0
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCch-------hhhHHHHHHHHHHHhc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQ-------QTATYYEQDVREKLRA 520 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~-------~~~~~~~~~~~~~l~~ 520 (549)
...++.+|++++|+|+++..+.+.. .|+..+... +.|+++|+||+|+...... .... .+......+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 144 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP--IQQGKRVAKE 144 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCC--HHHHHHHHHH
Confidence 1146899999999999876555444 366666543 6999999999998542110 0000 1222233333
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+..+++++||++|.||+++|+.+.+.
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 444579999999999999999999754
No 273
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.68 E-value=3.8e-16 Score=142.70 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=100.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+|+|++.... ....+..+.+.....+.+.+ ..+.+|||||...+..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE--------------- 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH---------------
Confidence 37999999999999999999987632 12222223333333444544 4578999999854211
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc------CCCeEEEEeccCC
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY------MDKFIILAVNKCE 314 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~------~~~p~ivv~NK~D 314 (549)
.....+..+|++|+|+|.+.+.+.... .+...+.+.. .+.|+++|+||+|
T Consensus 65 -----------------------~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 65 -----------------------VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred -----------------------HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 222456789999999998865332221 2333333221 3589999999999
Q ss_pred CChhh---HHhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 315 SPRKG---IMQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 315 ~~~~~---~~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+.+.. ...... ....+.+++++||++|.|+.++++.+.+.+
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred cccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 86321 111111 223467889999999999999999987654
No 274
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=5.1e-16 Score=141.64 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=102.1
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+++++... ....+++++.......+.+++. .+.+|||||...+..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA--------------- 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh---------------
Confidence 479999999999999999998553 2333444444444445566654 457899999865332
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++++|+|.+...+.... .+...+.. ...+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 65 -----------------------MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred -----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 122456789999999998754333222 22233322 2247899999999998653
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... ....+ ...+.+++++||++|.|+.+++.++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 211 11122 23456899999999999999999987654
No 275
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.68 E-value=4.1e-16 Score=142.51 Aligned_cols=154 Identities=17% Similarity=0.185 Sum_probs=99.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+++|.+.... ....+..+.......+..++ ..+.+|||||...+..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~--------------- 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT--------------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH---------------
Confidence 57999999999999999999977532 11122222222222333444 4588999999754221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~~ 319 (549)
.....+..+|++++|+|...+.+.... .+...+.... .+.|+++|+||+|+.+..
T Consensus 66 -----------------------~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 66 -----------------------ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred -----------------------HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 223567889999999998764322211 1233333322 367899999999986543
Q ss_pred HH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. .... ....+++++++||++|.|+.++++.+...+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 123 VVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 21 1111 2235678999999999999999999876553
No 276
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=5e-16 Score=152.48 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=111.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCee-----e------------cCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhh
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTI-----V------------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~-----~------------~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~ 435 (549)
+|+++|++|+|||||.++++...... + ....|+|++.....+. +++.++++|||||+.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df~- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDFT- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHHH-
Confidence 47999999999999999997421110 1 1234788887777776 478899999999996642
Q ss_pred hccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHH
Q 008909 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR 515 (549)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 515 (549)
..+..+++.+|++++|+|+..+...++..+++.+...++|+++++||+|+..... +....+++
T Consensus 79 -------------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~----~~~~~~l~ 141 (270)
T cd01886 79 -------------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADF----FRVVEQIR 141 (270)
T ss_pred -------------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH----HHHHHHHH
Confidence 3456688999999999999999999999999999999999999999999875432 23456677
Q ss_pred HHHhcCCCCCEEEEccccC
Q 008909 516 EKLRALDWAPIVYSTAIAG 534 (549)
Q Consensus 516 ~~l~~~~~~~~i~iSA~~g 534 (549)
+.+.......++|+||..+
T Consensus 142 ~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 142 EKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHhCCCceEEEeccccCCC
Confidence 7777666666889998743
No 277
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.68 E-value=8.1e-17 Score=153.44 Aligned_cols=188 Identities=21% Similarity=0.230 Sum_probs=137.7
Q ss_pred hHHhhcccccchhhhhhhhccccccccCCCCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-
Q 008909 130 RQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW- 208 (549)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~- 208 (549)
+|+.+.++...++++...++++ ..+..+.....|.|+++||+|+|||||+++|++.. ....+..+.|.++......+
T Consensus 146 ~rllr~kea~lrKeL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 146 RRLLRIKEAQLRKELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAHLP 223 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhccCC
Confidence 3566667777777777777766 34344555678999999999999999999999654 55667778888888776655
Q ss_pred CCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCc
Q 008909 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (549)
Q Consensus 209 ~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~ 288 (549)
.|..+++.||.||.+ .++..++..| +.++..+..+|++++|+|+++|...
T Consensus 224 sg~~vlltDTvGFis--dLP~~LvaAF----------------------------~ATLeeVaeadlllHvvDiShP~ae 273 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFIS--DLPIQLVAAF----------------------------QATLEEVAEADLLLHVVDISHPNAE 273 (410)
T ss_pred CCcEEEEeechhhhh--hCcHHHHHHH----------------------------HHHHHHHhhcceEEEEeecCCccHH
Confidence 567899999999986 5555555444 4677888999999999999998776
Q ss_pred chHHHH-HHHHHccCCC-------eEEEEeccCCCChhhHHhHHHHHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 289 ADEEIA-DWLRKNYMDK-------FIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 289 ~~~~~~-~~l~~~~~~~-------p~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...+.+ ..+... +. .++-|-||+|..+..... .....+.+||++|.|++++.+.+...+..
T Consensus 274 ~q~e~Vl~vL~~i--gv~~~pkl~~mieVdnkiD~e~~~~e~------E~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 274 EQRETVLHVLNQI--GVPSEPKLQNMIEVDNKIDYEEDEVEE------EKNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHhHHHhhccccccccccCcc------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence 665544 344443 33 256778888876532211 11236889999999999999998876653
No 278
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.68 E-value=3.8e-16 Score=149.19 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=103.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC---ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.+|+++|.+|||||||+++|++... .....+..+.+.....+.+.+ ..+.+|||||...+..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~-------------- 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK-------------- 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH--------------
Confidence 3799999999999999999997652 222233333444444555543 4678999999743211
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHcc----CCCeEEEEeccCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNY----MDKFIILAVNKCES 315 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~~----~~~p~ivv~NK~D~ 315 (549)
.....+..+|++|+|+|.+.+.+..... +...+.+.. .+.|+++|+||+|+
T Consensus 66 ------------------------l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 66 ------------------------MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred ------------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 2235578899999999988754433322 333343321 24578999999998
Q ss_pred ChhhHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 316 PRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 316 ~~~~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...... ....+ ...+++++++||++|.|+.++++.+...+..
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 122 EHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 643211 11111 2245678999999999999999999877654
No 279
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=4.8e-16 Score=145.69 Aligned_cols=157 Identities=18% Similarity=0.127 Sum_probs=102.5
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++.+.........+..........+.+++ ..+.||||||...+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 64 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR---------------- 64 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH----------------
Confidence 37999999999999999999876532111222222233333345555 467899999964321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~~ 319 (549)
......+..+|++|+|+|.+...+.... .+...+.... .+.|+++|+||+|+....
T Consensus 65 ----------------------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 65 ----------------------SVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred ----------------------HhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 1223556789999999998765333221 2333343322 367999999999986322
Q ss_pred H---HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 320 I---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 320 ~---~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
. ..... ....+.+++++||++|.|+.+++..+.+.+...
T Consensus 123 ~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1 11111 123466899999999999999999998877644
No 280
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.3e-16 Score=157.97 Aligned_cols=160 Identities=23% Similarity=0.241 Sum_probs=129.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCee--------------ecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccc
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI--------------VSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRK 432 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~--------------~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~ 432 (549)
.+.+++.++.+...|||||..+++....+. +.-.-|+|+......+.+.+| ..++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 345689999999999999999998643321 223348888887776665443 5789999999999
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
|+- +..+.+..||++|||||++++...|....+....+.+..+|.|+||+|+..++.. .+..
T Consensus 138 Fs~--------------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe----~V~~ 199 (650)
T KOG0462|consen 138 FSG--------------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPE----RVEN 199 (650)
T ss_pred ccc--------------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHH----HHHH
Confidence 853 2345788999999999999999999999999999999999999999999876543 4466
Q ss_pred HHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 513 DVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++.+.|... ..+++.+|||+|.|+++|++.|.+.
T Consensus 200 q~~~lF~~~-~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 200 QLFELFDIP-PAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred HHHHHhcCC-ccceEEEEeccCccHHHHHHHHHhh
Confidence 777777744 4589999999999999999998763
No 281
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=3.2e-16 Score=146.80 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=101.9
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||+++|++... ...+.+++.......+.+++.. +.+|||||...+..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------------- 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA---------------- 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----------------
Confidence 489999999999999999986643 2333444433333444566644 78899999754322
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc----cCCCeEEEEeccCCCCh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESPR 317 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ivv~NK~D~~~ 317 (549)
....++..+|++|+|+|.+.+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 63 ----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 63 ----------------------LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred ----------------------HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 222567889999999998765433322 233333321 24689999999999854
Q ss_pred hhHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... ....+ ...+.+++++||++|.|+.+++..+.+.+..
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2211 11111 2346678999999999999999999876643
No 282
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.68 E-value=8.6e-16 Score=166.54 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=114.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee--------e------cCCCCceeeeeEEEEecc--C--CCeEEEEeCCCcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI--------V------SPISGTTRDAIDTEFTGP--E--GQKFRLIDTAGIR 431 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~--------~------~~~~gtt~~~~~~~~~~~--~--~~~i~l~DTpG~~ 431 (549)
..++++++|+.++|||||+.+++...... . ....|.|.......+.+. + +..++||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 35689999999999999999998632111 0 112366666544444321 2 4579999999997
Q ss_pred chhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHH
Q 008909 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (549)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 511 (549)
+|.. .+.++++.+|++|+|||++++...++...+..+...++|+|+|+||+|+...... ...
T Consensus 86 dF~~--------------~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~----~v~ 147 (600)
T PRK05433 86 DFSY--------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPE----RVK 147 (600)
T ss_pred HHHH--------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHH----HHH
Confidence 7632 2445788999999999999998888888777777789999999999998643221 122
Q ss_pred HHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 512 QDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 512 ~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++.+.+. .....++++||++|.|+++|+++|...+
T Consensus 148 ~ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 148 QEIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred HHHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 33333332 1223589999999999999999997653
No 283
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.68 E-value=4.9e-16 Score=141.86 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=102.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||++++++.... ....+..+.......+.+++. .+.+|||||...+..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------------- 67 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA-------------- 67 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH--------------
Confidence 468999999999999999999977532 223344444444455556664 578999999754221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~ 318 (549)
.....+..++++|+|+|.+++.+.... .++..+.... .+.|+++|+||+|+...
T Consensus 68 ------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 68 ------------------------ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred ------------------------HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 223456789999999998764433322 1223333322 25899999999998643
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.. .....+ ...+.+++++||++|.|+.++++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 21 111222 2345678999999999999999988654
No 284
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.68 E-value=6.5e-16 Score=140.88 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=101.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||++++++... .....+++.+.....+.+++ ..+.+|||||..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---------------- 63 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA---------------- 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH----------------
Confidence 799999999999999999997653 22333344444444455555 3577899999865322
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~~ 319 (549)
.....+..+|.+++|+|+..+.+.... .+...+... ..+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 64 ----------------------MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred ----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 122456779999999998764332221 122223221 2368999999999986532
Q ss_pred H---HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 I---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~---~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. ..... ....+.+++++||++|.|+.++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 122 VVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred eEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 1 11111 1234568899999999999999999887654
No 285
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=5.3e-16 Score=141.25 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=103.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||++++++... .....+..+.+.....+.+++ ..+.+|||||...+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------------- 63 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR---------------- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH----------------
Confidence 3799999999999999999997753 222233333333344455655 467899999974321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc-cCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~-~~~~p~ivv~NK~D~~~~~ 319 (549)
......+..+|++++|+|.+++.+..... +...+... ..+.|+++++||+|+....
T Consensus 64 ----------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 64 ----------------------SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 12335567899999999987754433221 22222222 1478999999999986522
Q ss_pred H---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. .....+ ...+++++++||++|.|++++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 122 QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1 111112 235678999999999999999999987664
No 286
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.68 E-value=2e-15 Score=137.63 Aligned_cols=164 Identities=24% Similarity=0.318 Sum_probs=111.2
Q ss_pred EEEeCCCCCChhHHHHHHhcC-CCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhh---hHHH
Q 008909 374 IAIVGRPNVGKSSILNALVGE-DRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA---LSVN 449 (549)
Q Consensus 374 v~~~G~~~~GKssl~n~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~---~~~~ 449 (549)
|+++|.+|+|||||+|.+++. .....+..+++|........ ...+.+|||||+..... ...... ....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~D~~g~~~~~~----~~~~~~~~~~~~~ 73 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV----NDKFRLVDLPGYGYAKV----SKEVKEKWGKLIE 73 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc----cCeEEEecCCCcccccc----CHHHHHHHHHHHH
Confidence 789999999999999999943 23335555566655432221 23889999999844211 000111 1122
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh-cCCCCCEEE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-ALDWAPIVY 528 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~ 528 (549)
..+......+++++|+|..+..+......++++...+.|+++|+||+|+....... .....+...++ .....++++
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELA---KALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHH---HHHHHHHHHHHhccCCCceEE
Confidence 22333346788999999988777777778888888889999999999996543221 12233344443 345578999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||+++.|+.+++++|.+++
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 151 FSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998764
No 287
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.68 E-value=5e-16 Score=140.87 Aligned_cols=147 Identities=23% Similarity=0.278 Sum_probs=97.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|++|+|||||+++|....... .. .|.......+.+.+..+.+|||||...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------------- 57 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TI--PTIGFNVETVTYKNLKFQVWDLGGQTSIR------------------- 57 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cC--CccCcCeEEEEECCEEEEEEECCCCHHHH-------------------
Confidence 58999999999999999997664322 11 23333334455667889999999986421
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcc--hHHHHHHHHH-ccCCCeEEEEeccCCCChhh-H
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG-I 320 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~-~ 320 (549)
.....++..+|++|+|+|++.+.+.. ...+...+.. ...+.|+++|+||+|+.+.. .
T Consensus 58 -------------------~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 58 -------------------PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred -------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 13345678899999999987642211 1222222322 22478999999999986432 1
Q ss_pred HhHHHHHH------cCCCceEeeccCCCChhhhHHHHHH
Q 008909 321 MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 321 ~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
........ .+++++++||++|.|+.++++++.+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 11111111 1235899999999999999988753
No 288
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=4.6e-16 Score=133.40 Aligned_cols=116 Identities=41% Similarity=0.581 Sum_probs=90.8
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+|+|.+|+|||||+|+|++.+...++..+++|.....+.+.+++..+.++||||+........
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~--------------- 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN--------------- 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH---------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH---------------
Confidence 58999999999999999999977778999999999998888888999999999999865321100
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEecc
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK 312 (549)
.. .....+.+.+..+|++++|+|+..+.......++++++ .++|+++|+||
T Consensus 66 ---------~~-----~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 66 ---------DG-----KEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ---------HH-----HHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred ---------HH-----HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 00 11234556678899999999987744445556667775 38999999998
No 289
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.68 E-value=4.8e-16 Score=142.73 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=100.3
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|.+|||||||+++|.+.... . ...|.......+.+.+..+.+|||||...+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~------------------ 58 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP------------------ 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhcch------------------
Confidence 5899999999999999999976421 2 23344444445667778899999999854221
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChhh-H
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG-I 320 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~-~ 320 (549)
.+...+..+|++++|+|.+.+.+... ..+...+.. ...+.|+++|+||+|+.... .
T Consensus 59 --------------------~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 59 --------------------LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred --------------------HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 23355678999999999876432221 122222221 12357999999999986431 1
Q ss_pred HhHHHHHHc-------CCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 321 MQVSEFWSL-------GFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 321 ~~~~~~~~~-------~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.....+... .+.++++||++|.|+.++++++.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 112222211 1246789999999999999999876654
No 290
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.68 E-value=5.7e-16 Score=141.12 Aligned_cols=152 Identities=21% Similarity=0.162 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||++++++.... .....+........+.+++. .+.+|||||...+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM-------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccch--------------
Confidence 47999999999999999999876432 22233333344445566664 4678999998664332
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
...++..+|++++|+|.+++-+.... .+...+... ..+.|+++|+||+|+...
T Consensus 66 ------------------------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 66 ------------------------RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred ------------------------HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 22456789999999998774433222 233333332 247899999999998643
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... ....+ ...+.+++++||++|.|+.+++..+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 211 11111 23456789999999999999998887543
No 291
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=5.1e-17 Score=138.46 Aligned_cols=156 Identities=19% Similarity=0.123 Sum_probs=108.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+++++|..-+|||+|+-+++..+ |.-......-..+....+... ....+.||||+|+++|..+.+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP----------- 80 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP----------- 80 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-----------
Confidence 4589999999999999999998653 332222111111111122111 234689999999999864321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
.+|++++++++|||++++.+++..+ |+.+++.. .+-++||+||+||...+.+.. +.. +..+..-++.
T Consensus 81 ---IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~-----qeA-e~YAesvGA~ 151 (218)
T KOG0088|consen 81 ---IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTR-----QEA-EAYAESVGAL 151 (218)
T ss_pred ---eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhH-----HHH-HHHHHhhchh
Confidence 1689999999999999987766654 66777664 578999999999977655432 222 2233344578
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++||+.+.||.+||+.+.+.
T Consensus 152 y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 152 YMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred heecccccccCHHHHHHHHHHH
Confidence 9999999999999999988653
No 292
>PTZ00369 Ras-like protein; Provisional
Probab=99.68 E-value=9.9e-16 Score=143.30 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||++++.+.... ..+..+........+.+++. .+.+|||||..++...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l------------- 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAM------------- 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhh-------------
Confidence 578999999999999999999976532 22222222222334445554 4678999998664332
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
...++..+|++++|+|.+++.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 70 -------------------------~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 70 -------------------------RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred -------------------------HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 22456789999999998875432222 222333222 23679999999999854
Q ss_pred hhHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.... ....+ ...+.+++++||++|.|+.+++..+.+.+.+.
T Consensus 125 ~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 3211 11112 23456889999999999999999998766543
No 293
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.68 E-value=4.2e-16 Score=142.42 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC--CceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++++.... ..+..+........+... ...+.+|||||...+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA--------------- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH---------------
Confidence 47999999999999999999976532 111121111122222233 34678999999865332
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc----cCCCeEEEEeccCCCC
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESP 316 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ivv~NK~D~~ 316 (549)
.....+..++++|+|+|.+.+.+.... .+...+... ..+.|+++|+||+|+.
T Consensus 65 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 65 -----------------------MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred -----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 112446678999999998775443322 233444332 1468999999999986
Q ss_pred hhhHH---hHH-HHHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 317 RKGIM---QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 317 ~~~~~---~~~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
+.... ... .....+..++++||++|.|+.++++.+..+
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 122 HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 52211 111 122345678999999999999999988643
No 294
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=6e-16 Score=149.56 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=125.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
...|.++|.||+|||||++.+...+ .++.++|+||..+....+....+..+++.|.||+.+- ++.....-.+
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG-------As~G~GLG~~ 230 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG-------ASEGVGLGLR 230 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccc-------cccCCCccHH
Confidence 4468999999999999999999775 7899999999999888887656778999999999763 3344455677
Q ss_pred HHHHHhcCCcEEEEEEccccC---CHhHHH-HHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh-c
Q 008909 451 AFRAIRRSDVVALVIEAMACI---TEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-A 520 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~---~~~~~~-~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~-~ 520 (549)
.++++.++-++++|+|++..- ..++.. +..++..+ ++|.+||+||+|+..+.+. .+.+.+.+. .
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~------~~~~~~~l~~~ 304 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE------LEELKKALAEA 304 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH------HHHHHHHHHHh
Confidence 899999999999999998532 134444 44556665 7999999999997654321 233334444 3
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+...+++||.+++|+++|...+.+++
T Consensus 305 ~~~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 305 LGWEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred cCCCcceeeehhcccCHHHHHHHHHHHH
Confidence 4454455599999999999999988764
No 295
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.67 E-value=6.7e-16 Score=162.52 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=110.4
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCee------------------------------ecCCCCceeeeeEEEEeccC
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPE 418 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 418 (549)
....+|+++|+.++|||||+++|+...... .....|+|++.....+.. +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 345689999999999999999998532111 012348899988777764 6
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc---CCHhHHHHHHHHHHhC-CcEEEEEe
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC---ITEQDCRIAERIEQEG-KGCLIVVN 494 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~---~~~~~~~~l~~l~~~~-~p~ivv~N 494 (549)
+..+.+|||||+.+| ...+...++.+|++++|||++++ ...+....+..+...+ .|+|||+|
T Consensus 84 ~~~i~iiDtpGh~~f--------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviN 149 (426)
T TIGR00483 84 KYEVTIVDCPGHRDF--------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAIN 149 (426)
T ss_pred CeEEEEEECCCHHHH--------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEE
Confidence 779999999999654 23455567899999999999987 4444444444444445 46889999
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHhcCC----CCCEEEEccccCCCHHH
Q 008909 495 KWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDK 539 (549)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~~~~~l~~~~----~~~~i~iSA~~g~~v~~ 539 (549)
|+|+..... ...+...+++.+.++..+ ..+++++||++|.|+++
T Consensus 150 K~Dl~~~~~-~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 150 KMDSVNYDE-EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ChhccCccH-HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 999975322 222334556666666554 25799999999999986
No 296
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=1.9e-15 Score=139.18 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=98.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+++++|.+|+|||||++++.+.......+..|.+.. .+. .++..+.+|||||+.++. ..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~----~i~-~~~~~~~~~D~~G~~~~~--------------~~ 74 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK----TVQ-SDGFKLNVWDIGGQRAIR--------------PY 74 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE----EEE-ECCEEEEEEECCCCHHHH--------------HH
Confidence 56899999999999999999998643333333343322 222 246789999999985432 11
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHH----HHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC----
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERI----EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL---- 521 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~---- 521 (549)
...+++.+|++++|+|+++...... ..++..+ ...++|+++++||+|+...... +.+.+.+...
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~i~~~l~~~~~~~ 147 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA-------EEIAEALNLHDLRD 147 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH-------HHHHHHcCCcccCC
Confidence 2335689999999999986432222 2233222 2346999999999998654321 1122222211
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
...+++++||++|.|++++|++|++
T Consensus 148 ~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 148 RTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1124789999999999999999975
No 297
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=5.3e-16 Score=140.56 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=95.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|++|+|||||+|+|.|.... .. ....+.+.+. .+|||||+..... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~-----~~~~v~~~~~--~~iDtpG~~~~~~--~--------------- 53 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----AR-----KTQAVEFNDK--GDIDTPGEYFSHP--R--------------- 53 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----Cc-----cceEEEECCC--CcccCCccccCCH--H---------------
Confidence 6999999999999999999976411 01 1122233333 2699999753211 0
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHH
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~ 324 (549)
+.+.....+..+|++++|+|++.+.+.....+. ....++|+++++||+|+.........
T Consensus 54 -----------------~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~----~~~~~~~ii~v~nK~Dl~~~~~~~~~ 112 (158)
T PRK15467 54 -----------------WYHALITTLQDVDMLIYVHGANDPESRLPAGLL----DIGVSKRQIAVISKTDMPDADVAATR 112 (158)
T ss_pred -----------------HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHH----hccCCCCeEEEEEccccCcccHHHHH
Confidence 112233457889999999999876544333222 22236799999999998654332222
Q ss_pred HH-HHcC--CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 325 EF-WSLG--FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 325 ~~-~~~~--~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.+ ...+ .+++++||++|.|++++++.+.+.+..
T Consensus 113 ~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 113 KLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 22 2334 389999999999999999999876643
No 298
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.67 E-value=2.7e-15 Score=144.54 Aligned_cols=153 Identities=24% Similarity=0.278 Sum_probs=108.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+++++|.+|+|||||+|++++.. ..+...+++|.+.....+.+ ++..+++|||||+.+... .......+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~-------~~~~~~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAA-------DGKGRGRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEE-CCeEEEEEECCCcccccc-------cchhHHHHHH
Confidence 68999999999999999999875 45677889998887766654 678999999999865321 0111233455
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHH-------------------------------------------H-H----
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERI-------------------------------------------E-Q---- 484 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l-------------------------------------------~-~---- 484 (549)
..++.+|++++|+|++++.. +-..+...+ . +
T Consensus 73 ~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~ 151 (233)
T cd01896 73 AVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIH 151 (233)
T ss_pred HhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCee
Confidence 67899999999999976321 111111111 1 1
Q ss_pred -----------------------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHH
Q 008909 485 -----------------------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYV 541 (549)
Q Consensus 485 -----------------------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~ 541 (549)
..+|+++|+||+|+..... ... +.. ..+++++||++|.|+++|+
T Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~----------~~~-~~~--~~~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 152 NADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE----------LDL-LAR--QPNSVVISAEKGLNLDELK 218 (233)
T ss_pred eEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH----------HHH-Hhc--CCCEEEEcCCCCCCHHHHH
Confidence 1369999999999864311 111 222 2468999999999999999
Q ss_pred HHHHhhh
Q 008909 542 LYLATSF 548 (549)
Q Consensus 542 ~~l~~~~ 548 (549)
+.+.+.+
T Consensus 219 ~~i~~~L 225 (233)
T cd01896 219 ERIWDKL 225 (233)
T ss_pred HHHHHHh
Confidence 9998865
No 299
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.6e-15 Score=159.66 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=116.6
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCe---------------eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT---------------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+++++|+.++|||||+++|++.... ......|+|++.....+.. ++.++.++||||+.+|
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH
Confidence 34568999999999999999999962111 1123358888887766653 6789999999999664
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
+..+...+..+|++++|+|+..+...++.+++..+...++| +|+++||+|+.... ...+.+.+
T Consensus 158 --------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~i~~ 221 (478)
T PLN03126 158 --------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE--ELLELVEL 221 (478)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHH--HHHHHHHH
Confidence 34566778899999999999999999999999999999998 77889999997532 22344556
Q ss_pred HHHHHHhcCC----CCCEEEEccccCC
Q 008909 513 DVREKLRALD----WAPIVYSTAIAGQ 535 (549)
Q Consensus 513 ~~~~~l~~~~----~~~~i~iSA~~g~ 535 (549)
++.+.++..+ ..+++++||.+|.
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccc
Confidence 7777777653 4689999999885
No 300
>PRK10218 GTP-binding protein; Provisional
Probab=99.67 E-value=1.8e-15 Score=163.16 Aligned_cols=158 Identities=22% Similarity=0.252 Sum_probs=119.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeee---------------cCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhh
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV---------------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~---------------~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~ 435 (549)
..+|+++|+.++|||||++++++...... ....|+|.......+. +++.++++|||||+.+|..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhHH
Confidence 46899999999999999999996321111 1234777776665665 4778999999999977632
Q ss_pred hccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHH
Q 008909 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR 515 (549)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 515 (549)
.+..+++.+|++|+|||++++...++..++..+...++|.++|+||+|+........ .+++.
T Consensus 84 --------------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~v----l~ei~ 145 (607)
T PRK10218 84 --------------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWV----VDQVF 145 (607)
T ss_pred --------------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHH----HHHHH
Confidence 244578999999999999998888898999999999999999999999876543332 34444
Q ss_pred HHHhcC------CCCCEEEEccccCC----------CHHHHHHHHHhh
Q 008909 516 EKLRAL------DWAPIVYSTAIAGQ----------SVDKYVLYLATS 547 (549)
Q Consensus 516 ~~l~~~------~~~~~i~iSA~~g~----------~v~~L~~~l~~~ 547 (549)
+.+..+ ...|++++||++|. |+..|++.|...
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 444221 23589999999998 588998887764
No 301
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.67 E-value=9.3e-16 Score=143.99 Aligned_cols=155 Identities=18% Similarity=0.140 Sum_probs=101.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcccc-ceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD-RMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
++|+++|.+|||||||+++|++.... ...+.++... .....+.+++.. +.+|||||...+...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------------- 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM------------- 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh-------------
Confidence 47999999999999999999976532 2223322222 222345566644 569999997653221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
....+..+|++++|+|...+.+... ..++..+.....+.|+++|+||+|+....
T Consensus 67 -------------------------~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 121 (193)
T cd04118 67 -------------------------SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121 (193)
T ss_pred -------------------------hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccc
Confidence 1134568999999999876533322 12344444443478999999999985421
Q ss_pred ----H---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 ----I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ----~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
. .....+ ...+.+++++||++|.|+.++++.+.+.+.+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred cccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1 111122 2345678999999999999999999877643
No 302
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=1.1e-15 Score=140.07 Aligned_cols=155 Identities=19% Similarity=0.130 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||++++.+... .....+....+.....+.+++ ..+.+|||||...+..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------------- 67 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------------- 67 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH--------------
Confidence 46899999999999999999997752 222222222333334445555 3578999999754221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 68 ------------------------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 68 ------------------------ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred ------------------------HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 223557889999999998765433221 122223322 246899999999998743
Q ss_pred hH---HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~---~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. ..... ....+.+++++||++|.|+.+++..+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 124 RVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 21 11111 2234668899999999999999999887653
No 303
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=7.2e-16 Score=144.17 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=102.4
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCc------e---------eeecCCCccccceeeeeeeCCceEEEEEcccccccCCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 228 (549)
.+|+++||+|+|||||+++|++... . ......|+|.+.....+..++.++.++||||+.++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 5799999999999999999985410 0 11124567777766666677888999999998531
Q ss_pred cchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-EE
Q 008909 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (549)
Q Consensus 229 ~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p-~i 307 (549)
...+...+..+|++++|+|+..+...++.+++..+... +.| ++
T Consensus 79 ----------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iI 122 (195)
T cd01884 79 ----------------------------------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIV 122 (195)
T ss_pred ----------------------------------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEE
Confidence 13445778889999999999988888888888877765 666 77
Q ss_pred EEeccCCCChhh-HHh-----HHHHH-Hc-----CCCceEeeccCCCChh
Q 008909 308 LAVNKCESPRKG-IMQ-----VSEFW-SL-----GFSPLPISAISGTGTG 345 (549)
Q Consensus 308 vv~NK~D~~~~~-~~~-----~~~~~-~~-----~~~~v~vSA~~g~gi~ 345 (549)
+++||+|+.... ... ...++ .. +.+++++||++|.++.
T Consensus 123 vviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 123 VFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 899999986322 111 11111 12 3478999999998853
No 304
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.67 E-value=7.1e-16 Score=142.38 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=100.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++....+ ...+..+........+.+++ ..+.+|||+|...+....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------- 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR------------- 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhh-------------
Confidence 4799999999999999999997653 22333333222233455666 457899999987643322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..++..+|++|+|+|.+++.+.... .+...+.....+.|+++|+||+|+....
T Consensus 67 -------------------------~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 67 -------------------------PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred -------------------------hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 1356789999999998876544433 2444454444578999999999985431
Q ss_pred HH---------------hHHHHH-HcC-CCceEeeccCCCChhhhHHHHHH
Q 008909 320 IM---------------QVSEFW-SLG-FSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 320 ~~---------------~~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
.. ....+. ..+ ..++++||++|.|+.++++.+..
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 10 001111 233 47899999999999999988764
No 305
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=9.2e-16 Score=144.74 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=104.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||++++.+.... ....+....+.....+.+.+ ..+.+|||||...+..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------------- 70 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-------------- 70 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH--------------
Confidence 578999999999999999999976532 11122222222233444445 3578999999754321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
....++..++++++|+|++.+.+.... .++..+.......|+++|+||+|+.+..
T Consensus 71 ------------------------~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 71 ------------------------ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred ------------------------HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 233567789999999998775433322 2334444444568999999999986532
Q ss_pred H---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
. .....+ ...+.+++++||++|.|+.++++.+...+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 2 111222 2346789999999999999999999887653
No 306
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.67 E-value=7e-16 Score=160.75 Aligned_cols=151 Identities=21% Similarity=0.258 Sum_probs=110.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeec--------------------------------CCCCceeeeeEEEEeccCCC
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVS--------------------------------PISGTTRDAIDTEFTGPEGQ 420 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~--------------------------------~~~gtt~~~~~~~~~~~~~~ 420 (549)
+++++|+.++|||||+++|+........ ..-|+|++.....+. +++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCCe
Confidence 6899999999999999999854322110 112677887766665 4677
Q ss_pred eEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCC-cEEEEEecccCC
Q 008909 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDTI 499 (549)
Q Consensus 421 ~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~-p~ivv~NK~Dl~ 499 (549)
++.++||||+.+|. ..+...+..+|++++|+|+..++..++.+.+..+...+. ++|+|+||+|+.
T Consensus 81 ~~~liDtPGh~~f~--------------~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQYT--------------RNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHHHH--------------HHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence 99999999996652 234457889999999999999988888888877777665 478899999997
Q ss_pred CCCchhhhHHHHHHHHHHHhcCC--CCCEEEEccccCCCHHH
Q 008909 500 PNKNQQTATYYEQDVREKLRALD--WAPIVYSTAIAGQSVDK 539 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~iSA~~g~~v~~ 539 (549)
... ....+.+.+.+...++..+ ..+++++||++|.|+++
T Consensus 147 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 147 DYD-EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cch-HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 533 2223334445555554433 35799999999999986
No 307
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.67 E-value=9.8e-16 Score=165.91 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=116.8
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCc--eeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.|+++|++|+|||||+++|+|... ......+|+|.+.....+.+.+..+.+|||||+..+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f------------------ 63 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF------------------ 63 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH------------------
Confidence 689999999999999999997531 222335688888877778888888999999998542
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-EEEEeccCCCChhhHH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGIM 321 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ivv~NK~D~~~~~~~ 321 (549)
.+.+..++..+|++++|+|+..+...+..+++..+... +.| +++|+||+|+.+....
T Consensus 64 --------------------~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 64 --------------------ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred --------------------HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCCHHHH
Confidence 12345677889999999999988777777777666554 677 9999999999764422
Q ss_pred h-----HHHHH-Hc----CCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 322 Q-----VSEFW-SL----GFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 322 ~-----~~~~~-~~----~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
. ...+. .. +.+++++||++|.|+.+++..+...+...
T Consensus 122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 1 11111 11 46899999999999999999887766544
No 308
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1.1e-15 Score=144.54 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-C--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.+|+++|.+|||||||+++|++.... ....+....+.....+.++ + ..+.+|||||...+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~-------------- 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG-------------- 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh--------------
Confidence 37999999999999999999976421 1112222223333344554 4 4578999999865322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc-----cCCCeEEEEeccCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-----YMDKFIILAVNKCE 314 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~-----~~~~p~ivv~NK~D 314 (549)
....++..++++|+|+|.+.+.+..... +...+... ..+.|+++|+||+|
T Consensus 66 ------------------------~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D 121 (201)
T cd04107 66 ------------------------MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD 121 (201)
T ss_pred ------------------------hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence 2235678899999999988754433321 22222221 24679999999999
Q ss_pred CChhh---HHhHHHHH-HcC-CCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 315 SPRKG---IMQVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 315 ~~~~~---~~~~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
+.+.. ......+. ..+ ..++++||++|.|+.+++..+.+.+...
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 122 LKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred cccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 86321 11112222 234 4789999999999999999998876543
No 309
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=1.4e-15 Score=143.74 Aligned_cols=154 Identities=19% Similarity=0.142 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhhHHHhhhCCC--ceeeecCCCccccceeeeeeeC---------------------------C-----
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGN--RAIVVDEPGVTRDRMYGRSFWG---------------------------E----- 210 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~--~~~~~~~~~~t~~~~~~~~~~~---------------------------~----- 210 (549)
+|+++||.|+|||||+.+|.+.. ........+.|..+......+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999997651 1111111222222221111111 2
Q ss_pred -ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-CCc
Q 008909 211 -HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTA 288 (549)
Q Consensus 211 -~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~-~~~ 288 (549)
..+.+|||||+.. +...+...+..+|++++|+|+..+ ...
T Consensus 82 ~~~i~~iDtPG~~~--------------------------------------~~~~~~~~~~~~D~~llVvd~~~~~~~~ 123 (203)
T cd01888 82 VRHVSFVDCPGHEI--------------------------------------LMATMLSGAAVMDGALLLIAANEPCPQP 123 (203)
T ss_pred ccEEEEEECCChHH--------------------------------------HHHHHHHhhhcCCEEEEEEECCCCCCCc
Confidence 6789999999743 123455677889999999999874 344
Q ss_pred chHHHHHHHHHccCCCeEEEEeccCCCChhhHH-h----HHHHHH----cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q----VSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~----~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+....+..+... ...|+++|+||+|+...... . ...+.. .+++++++||++|.|+++|++.+...++.
T Consensus 124 ~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 124 QTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 444555444432 23578999999999753221 1 111221 24578999999999999999999876653
No 310
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.67 E-value=8.3e-16 Score=141.50 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++.+.... ..+..+........+.+++ ..+.+|||||...+..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA--------------- 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH---------------
Confidence 57999999999999999999976532 2222222223333455666 3578899999865322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
....++..+|++++|+|.+++.+..... +...+... ..+.|+++|+||+|+...
T Consensus 66 -----------------------l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 66 -----------------------MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred -----------------------HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 2224567899999999998766555433 33334331 246899999999998543
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ....+ ...+++++++||++|.|++++++.+...+.+
T Consensus 123 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 123 RQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 211 11112 2346789999999999999999999876543
No 311
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.67 E-value=1.2e-15 Score=138.83 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=109.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|..++|||||++++.+.. +.....+....+.....+...+ ...+.+|||+|+.++.. . .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------------~--~ 65 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS------------L--R 65 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH------------H--H
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccccccccccccccccccccccccc------------c--c
Confidence 58999999999999999999864 3333444333555555554422 34689999999865422 1 1
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
...++.+|++++|+|.+++-+.+... |+..+... +.|++||+||.|+...+... .++..+.....+ .+++
T Consensus 66 ~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~-----~~~~~~~~~~~~-~~~~ 139 (162)
T PF00071_consen 66 DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS-----VEEAQEFAKELG-VPYF 139 (162)
T ss_dssp HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC-----HHHHHHHHHHTT-SEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeeeccccccccccch-----hhHHHHHHHHhC-CEEE
Confidence 23579999999999998865444443 55555554 47999999999987644333 233445555555 7999
Q ss_pred EEccccCCCHHHHHHHHHhh
Q 008909 528 YSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~ 547 (549)
++||+++.||.++|..+.+.
T Consensus 140 e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp EEBTTTTTTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 99999999999999998764
No 312
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=1.4e-15 Score=138.94 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=100.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||++++.+..... ...+..+.+.....+.+++ ..+.+|||||...+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------------- 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE-RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR--------------- 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc-cCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH---------------
Confidence 4689999999999999999998654221 1112222233344555666 467899999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++++|+|.+.+.+... ..++..+.. ...+.|+++|+||+|+...
T Consensus 67 -----------------------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 67 -----------------------TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 123355678999999999987543332 123333333 2246899999999998653
Q ss_pred hH---HhHHHHH-HcCC-CceEeeccCCCChhhhHHHHHHH
Q 008909 319 GI---MQVSEFW-SLGF-SPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 319 ~~---~~~~~~~-~~~~-~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.. .....+. ..+. .++++||++|.|++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 124 REVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 21 1112222 2333 57999999999999999988653
No 313
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-15 Score=135.66 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=115.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|..+||||||+++++... +.....+.+-.+.....+.+.|+. +++|||+|+++|+..
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl------------- 87 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------- 87 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh-------------
Confidence 4789999999999999999999654 222333344456666777777754 689999999886653
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHH-HHccC-CCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWL-RKNYM-DKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l-~~~~~-~~p~ivv~NK~D~~~ 317 (549)
+..+++++.++|+|+|.++..+... ..+++-+ .+... +..+++|+||.||.+
T Consensus 88 -------------------------ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 88 -------------------------IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred -------------------------hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 3378899999999999887544432 2334333 33433 366789999999988
Q ss_pred hhHHhHH----HHHHcCCCceEeeccCCCChhhhHHHHHHHhhhhcc
Q 008909 318 KGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEG 360 (549)
Q Consensus 318 ~~~~~~~----~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~~ 360 (549)
++..... .....+..++.+||+.|.|+..++..|...++....
T Consensus 143 krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 143 KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 7543322 233456678999999999999999998888776544
No 314
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=5.8e-16 Score=140.97 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=99.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCcee-eecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.+|+++|++|+|||||+|++++..... ..+..+. ......+.+++ ..+.+|||||...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~v~~~~~~~~~~i~D~~G~~~~~~-------------- 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGA--AFLTQTVNLDDTTVKFEIWDTAGQERYRS-------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEeCCchHHHHH--------------
Confidence 479999999999999999999876332 1222221 12223344444 4578999999754211
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHcc-CCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++++|+|++.+.+... ..++..+.... ...|+++++||+|+...
T Consensus 66 ------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 66 ------------------------LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred ------------------------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 12245677999999999876432222 22333343332 46789999999998632
Q ss_pred h---HHhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 G---IMQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~---~~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
. ...... ....+.+++++||++|.|+.++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 122 RQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1 111111 223457899999999999999999987654
No 315
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=1.1e-15 Score=160.50 Aligned_cols=162 Identities=20% Similarity=0.235 Sum_probs=121.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe------------------------------eecCCCCceeeeeEEEEeccCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPEG 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~------------------------------~~~~~~gtt~~~~~~~~~~~~~ 419 (549)
...+++++|+.++|||||+.+|+..... ...-..|+|++.....+. +++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCC
Confidence 3458999999999999999999852111 001123788887766665 467
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-------CHhHHHHHHHHHHhCCc-EEE
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-------TEQDCRIAERIEQEGKG-CLI 491 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-------~~~~~~~l~~l~~~~~p-~iv 491 (549)
..+.|+||||+.+| ...+...+..+|++++|+|+..+. ..+..+.+..+...++| +||
T Consensus 85 ~~i~lIDtPGh~~f--------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv 150 (446)
T PTZ00141 85 YYFTIIDAPGHRDF--------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIV 150 (446)
T ss_pred eEEEEEECCChHHH--------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEE
Confidence 89999999999765 345666789999999999999875 36888889999999987 568
Q ss_pred EEecccCCC-CCchhhhHHHHHHHHHHHhcCCC----CCEEEEccccCCCHHH------------HHHHHHh
Q 008909 492 VVNKWDTIP-NKNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVDK------------YVLYLAT 546 (549)
Q Consensus 492 v~NK~Dl~~-~~~~~~~~~~~~~~~~~l~~~~~----~~~i~iSA~~g~~v~~------------L~~~l~~ 546 (549)
++||+|... .......+++.+++.+.+...++ .+++|+||++|.|+.+ |++.|..
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~ 222 (446)
T PTZ00141 151 CINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT 222 (446)
T ss_pred EEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC
Confidence 999999532 12223345667778888776554 6799999999999964 7777654
No 316
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.67 E-value=1.2e-15 Score=140.49 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+.+++...+ ...+..+........+.+++ ..+.+|||+|...+.....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~------------ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP------------ 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccch------------
Confidence 4799999999999999999997653 22222222222233445555 4578999999876554332
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
.++..++++|+|+|.+++.+.... .+...+.....+.|+++|+||+|+.+..
T Consensus 68 --------------------------~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 68 --------------------------LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred --------------------------hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 457889999999999876665543 3445454444578999999999985432
Q ss_pred -----------H--HhHHHHH-HcCC-CceEeeccCCCChhhhHHHHHHHh
Q 008909 320 -----------I--MQVSEFW-SLGF-SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 320 -----------~--~~~~~~~-~~~~-~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
. .+...+. ..+. .++++||++|.|+++++..+.+.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 1 1111222 2355 489999999999999999988755
No 317
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.66 E-value=1e-15 Score=139.20 Aligned_cols=146 Identities=20% Similarity=0.223 Sum_probs=94.7
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCc--eeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||+++|.+... ....++.+ .....+...+..+.+|||||..++..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g----~~~~~~~~~~~~~~l~Dt~G~~~~~~---------------- 60 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG----FNVESFEKGNLSFTAFDMSGQGKYRG---------------- 60 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc----cceEEEEECCEEEEEEECCCCHhhHH----------------
Confidence 488999999999999999997642 12222333 22233445677899999999864221
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc----cCCCeEEEEeccCCCCh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESPR 317 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ivv~NK~D~~~ 317 (549)
....++..+|++|+|+|++.+.+.... ..+..+... ..+.|+++|+||+|+..
T Consensus 61 ----------------------~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 61 ----------------------LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred ----------------------HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 223456789999999998875432211 122222111 13689999999999865
Q ss_pred hhH-HhHHHHHH------cCCCceEeeccCCCChhhhHHHHH
Q 008909 318 KGI-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 318 ~~~-~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
... ........ ..+.++++||++|.|++++++++.
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 119 ALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred CCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 321 11111111 122478999999999999999875
No 318
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=1.5e-15 Score=139.21 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||++++++..... ...+..+.+.....+.+++ ..+.+|||||...+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR--------------- 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 4689999999999999999999765322 2222222333333444554 468899999964321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++++|+|++.+.+..+.. ++..++. ...+.|+++|+||+|+...
T Consensus 68 -----------------------~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 68 -----------------------SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 12345678899999999988643332221 2222222 2246899999999998743
Q ss_pred hH---HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~---~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.. ..... ....+..++++||+++.|+.+++..+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 125 REVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 21 11111 233567899999999999999998887665
No 319
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.66 E-value=9.3e-16 Score=157.04 Aligned_cols=208 Identities=22% Similarity=0.262 Sum_probs=138.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH--HhHHH-----HHHcCC---Cce
Q 008909 265 QATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSE-----FWSLGF---SPL 334 (549)
Q Consensus 265 ~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~--~~~~~-----~~~~~~---~~v 334 (549)
.+......++++++|+|+.+.......++.+.+ .++|+++|+||+|+.+... ..... ....++ .++
T Consensus 56 ~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~ 131 (360)
T TIGR03597 56 LLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDII 131 (360)
T ss_pred HHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEE
Confidence 333445678999999998765544444444433 3689999999999875421 11111 223454 478
Q ss_pred EeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCC-----CeeecCCCCceeee
Q 008909 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED-----RTIVSPISGTTRDA 409 (549)
Q Consensus 335 ~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~-----~~~~~~~~gtt~~~ 409 (549)
.+||++|.|+++++..+.+... ...++++|.+|+|||||+|++++.. ...++..||||++.
T Consensus 132 ~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~ 197 (360)
T TIGR03597 132 LVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL 197 (360)
T ss_pred EecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE
Confidence 9999999999999998865421 2489999999999999999999843 35788999999997
Q ss_pred eEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHH---HhcCCcEEEEEEccccCCHhHHHHHHHHHHhC
Q 008909 410 IDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA---IRRSDVVALVIEAMACITEQDCRIAERIEQEG 486 (549)
Q Consensus 410 ~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~---~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~ 486 (549)
..... +..+.++||||+.....+.. ... .+.++. -+......+.+|..+.+....+..+..+....
T Consensus 198 ~~~~~----~~~~~l~DtPG~~~~~~~~~---~l~----~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~ 266 (360)
T TIGR03597 198 IEIPL----DDGHSLYDTPGIINSHQMAH---YLD----KKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEK 266 (360)
T ss_pred EEEEe----CCCCEEEECCCCCChhHhhh---hcC----HHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCc
Confidence 65443 23468999999975432111 111 111112 24567788888877655555554444454455
Q ss_pred CcEEEEEecccCCCC
Q 008909 487 KGCLIVVNKWDTIPN 501 (549)
Q Consensus 487 ~p~ivv~NK~Dl~~~ 501 (549)
..+.+.++|.+....
T Consensus 267 ~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 267 TSFTFYVSNELNIHR 281 (360)
T ss_pred eEEEEEccCCceeEe
Confidence 667778888776654
No 320
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.66 E-value=9.8e-16 Score=142.65 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=101.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
+..+|+++|.+|||||||++++.+.....+ ..|.......+.+++..+.++||||...+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~---------------- 75 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQAR---------------- 75 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHHH----------------
Confidence 358899999999999999999998653222 223444455666778889999999985421
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcc--hHHHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
.....++..+|++++|+|++.+.... ...+...+.. ...+.|+++|+||+|+...
T Consensus 76 ----------------------~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 76 ----------------------RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 12335678899999999987642221 1122222221 1247899999999998532
Q ss_pred h-HHhHHHHHH-------------cCCCceEeeccCCCChhhhHHHHHHH
Q 008909 319 G-IMQVSEFWS-------------LGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 319 ~-~~~~~~~~~-------------~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
. ..+...... ....++++||++|.|+.++++++...
T Consensus 134 ~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 134 ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 1 111111111 12247999999999999999998643
No 321
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.66 E-value=1.2e-15 Score=169.11 Aligned_cols=160 Identities=23% Similarity=0.275 Sum_probs=116.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|++|||||||+|+|+|.+ ..+++.+|+|.+...+.+.+++.++.++||||+.++.......
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~----------- 70 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT----------- 70 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccc-----------
Confidence 4579999999999999999999986 4688999999999888888888999999999998754321100
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHH--hhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~--i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
...+ +.+..+ ...+|++++|+|++.. .....+...+.+. +.|+++++||+|+.++..
T Consensus 71 --------------s~~E---~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~--giPvIvVlNK~Dl~~~~~ 129 (772)
T PRK09554 71 --------------SLDE---QIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLEL--GIPCIVALNMLDIAEKQN 129 (772)
T ss_pred --------------cHHH---HHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHc--CCCEEEEEEchhhhhccC
Confidence 0000 011122 2468999999998763 2233344445554 899999999999864322
Q ss_pred H-h-HHH-HHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 321 M-Q-VSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 321 ~-~-~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
. . ... ....+.+++++||++|.|++++.+.+....
T Consensus 130 i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 130 IRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred cHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 1 1 111 234678999999999999999999887654
No 322
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.66 E-value=1.5e-15 Score=140.77 Aligned_cols=154 Identities=17% Similarity=0.158 Sum_probs=99.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC------------CceEEEEEcccccccCCCCcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQPN 230 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~ 230 (549)
..+|+++|.+|||||||++++.+... .....+....+.....+.+. ...+.+|||||...+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----- 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR----- 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH-----
Confidence 46899999999999999999987642 11112222222222223322 2468899999975421
Q ss_pred hhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEE
Q 008909 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFII 307 (549)
Q Consensus 231 ~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~i 307 (549)
......+..+|++++|+|.+.+.+.... .+...+... ..+.|++
T Consensus 78 ---------------------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 124 (180)
T cd04127 78 ---------------------------------SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV 124 (180)
T ss_pred ---------------------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 1233567889999999998764333322 122233321 2367899
Q ss_pred EEeccCCCChhhHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 308 LAVNKCESPRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 308 vv~NK~D~~~~~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+|+||+|+.+.... ....+ ...+++++++||++|.|++++++.+.+.+
T Consensus 125 iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 125 LCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998653211 11112 23467899999999999999999987655
No 323
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.66 E-value=2.9e-15 Score=161.82 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=108.4
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-CceeeeeEE--EEecc--------C-------CCeEEEEeCCCc
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDT--EFTGP--------E-------GQKFRLIDTAGI 430 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~-gtt~~~~~~--~~~~~--------~-------~~~i~l~DTpG~ 430 (549)
.+.+.|+++|++++|||||++++.+.... ...+ +.|.+.-.. +.... . -..+.+|||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 35678999999999999999999876422 2233 333332110 00000 0 013789999999
Q ss_pred cchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCc-------
Q 008909 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKN------- 503 (549)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~------- 503 (549)
.+|.. ...+.++.+|++++|+|+++++..+....+..+...++|+++|+||+|+.....
T Consensus 82 e~f~~--------------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 82 EAFTN--------------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred HHHHH--------------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchH
Confidence 77632 122457889999999999998888888888888888999999999999863211
Q ss_pred --------hhhhHHH---HHHHHHHHhcC--------------CCCCEEEEccccCCCHHHHHHHHHh
Q 008909 504 --------QQTATYY---EQDVREKLRAL--------------DWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 504 --------~~~~~~~---~~~~~~~l~~~--------------~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
....+.+ ..++...+... +..+++++||++|.|+++|++.+..
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0001111 11122233322 2467999999999999999988753
No 324
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=9.9e-16 Score=143.02 Aligned_cols=155 Identities=16% Similarity=0.080 Sum_probs=101.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-C--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.+|+++|.+|+|||||+++|++.... ..+..++.......+... + ..+.+|||||...+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------------- 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-------------- 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH--------------
Confidence 37999999999999999999976532 222222222222233343 3 3578999999754322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH--HHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~--~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++++|+|.+++.+..... +...+.....+.|+++|+||+|+...
T Consensus 65 ------------------------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 65 ------------------------LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred ------------------------HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 1123567899999999988754443321 23333333357899999999998653
Q ss_pred h-------HHhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 G-------IMQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~-------~~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
. ......+ ...+. +++++||++|.|+.+++..+...+...
T Consensus 121 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 121 KNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred ccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 2 1111122 23455 789999999999999999888776543
No 325
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.66 E-value=1.5e-15 Score=160.71 Aligned_cols=156 Identities=22% Similarity=0.246 Sum_probs=111.9
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeec--------------------------------CCCCceeeeeEEEEec
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVS--------------------------------PISGTTRDAIDTEFTG 416 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~--------------------------------~~~gtt~~~~~~~~~~ 416 (549)
....+++++|+.++|||||+++|+........ ...|+|++.....+.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~- 103 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS- 103 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-
Confidence 34568999999999999999999865332211 012566776655554
Q ss_pred cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhC-CcEEEEEec
Q 008909 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNK 495 (549)
Q Consensus 417 ~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~-~p~ivv~NK 495 (549)
+++.++.++||||+.+| ...+...+..+|++++|+|+..++..++.+.+..+...+ .|+|+|+||
T Consensus 104 ~~~~~i~~iDTPGh~~f--------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNK 169 (474)
T PRK05124 104 TEKRKFIIADTPGHEQY--------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNK 169 (474)
T ss_pred cCCcEEEEEECCCcHHH--------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEe
Confidence 46779999999998654 223455679999999999999988877777666666665 468889999
Q ss_pred ccCCCCCchhhhHHHHHHHHHHHhcCC---CCCEEEEccccCCCHHHH
Q 008909 496 WDTIPNKNQQTATYYEQDVREKLRALD---WAPIVYSTAIAGQSVDKY 540 (549)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~~~~~l~~~~---~~~~i~iSA~~g~~v~~L 540 (549)
+|+.... ......+.+++...++..+ ..+++|+||++|.|++++
T Consensus 170 iD~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 170 MDLVDYS-EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred eccccch-hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 9997532 2223344455555454433 478999999999999764
No 326
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.66 E-value=1.6e-15 Score=139.34 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=99.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|++|+|||||+|++++.... ....+....+.....+.+.+. .+.+|||||...+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------------- 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS--------------- 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh---------------
Confidence 37999999999999999999977522 222222222333334455554 457899999754211
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-----CCCeEEEEeccCCC
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKCES 315 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ivv~NK~D~ 315 (549)
.....++.+|++|+|+|+..+.+.... .+...+.... .+.|+++|+||+|+
T Consensus 65 -----------------------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (172)
T cd01862 65 -----------------------LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred -----------------------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence 233567889999999998765432222 1222222222 26899999999999
Q ss_pred Chhh---HHhHHHH-HHcC-CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 316 PRKG---IMQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 316 ~~~~---~~~~~~~-~~~~-~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
..+. ......+ ...+ .+++++||++|.|+.++++.+.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 122 EEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred ccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7321 1111222 2233 579999999999999999998876543
No 327
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=4.1e-15 Score=141.47 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=85.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecC---------------CCCceeeeeEEEEecc---------CCCeEEEEeCC
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSP---------------ISGTTRDAIDTEFTGP---------EGQKFRLIDTA 428 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~---------~~~~i~l~DTp 428 (549)
+|+++|+.++|||||+.+|+......... ..|.|+......+.+. .+..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 78999999999999999998643221111 1144444332222221 15678999999
Q ss_pred CccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCC
Q 008909 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (549)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~ 499 (549)
|+.+|. ..+..+++.+|++++|||+..+...++..+++.+...++|+|+|+||+|+.
T Consensus 82 G~~~f~--------------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS--------------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccH--------------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 997753 245668899999999999999999999999988888889999999999986
No 328
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=8.6e-16 Score=147.19 Aligned_cols=156 Identities=24% Similarity=0.275 Sum_probs=117.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
-.+++++|.|++|||||+|.+++.+ ..+..+++||...+.+.+.+ +|.+|+++|+||+..-. .......++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~ga-------s~g~grG~~ 133 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGA-------SSGRGRGRQ 133 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEee-cCceEEEEcCcccccCc-------ccCCCCcce
Confidence 3589999999999999999999875 67899999999999999886 88999999999997632 222222345
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh---------------------------------------------
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE--------------------------------------------- 485 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~--------------------------------------------- 485 (549)
.+..+|.||++++|+|+...... -..+.+++.+.
T Consensus 134 vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~ 212 (365)
T COG1163 134 VLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYR 212 (365)
T ss_pred eeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhC
Confidence 66678999999999999853211 01112222221
Q ss_pred --------------------------CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHH
Q 008909 486 --------------------------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (549)
Q Consensus 486 --------------------------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~ 539 (549)
.+|+++|+||+|+..... ...+.+. ..++++||+.++|+++
T Consensus 213 I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~-------~~~l~~~------~~~v~isa~~~~nld~ 279 (365)
T COG1163 213 IHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE-------LERLARK------PNSVPISAKKGINLDE 279 (365)
T ss_pred cccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH-------HHHHHhc------cceEEEecccCCCHHH
Confidence 589999999999986321 1222222 2789999999999999
Q ss_pred HHHHHHhhhC
Q 008909 540 YVLYLATSFT 549 (549)
Q Consensus 540 L~~~l~~~~~ 549 (549)
|.+.|...|+
T Consensus 280 L~e~i~~~L~ 289 (365)
T COG1163 280 LKERIWDVLG 289 (365)
T ss_pred HHHHHHHhhC
Confidence 9999988763
No 329
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=1.3e-15 Score=142.56 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=102.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++.+..... .+..+........+.+++ ..+.+|||||...+.....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~------------ 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRS------------ 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccc------------
Confidence 379999999999999999999765321 111111111222334444 4678999999866433221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
.++..+|++++|+|.+.+.+.... .++..+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 67 --------------------------LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred --------------------------ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence 345779999999998876444433 2444555444578999999999986532
Q ss_pred HHh---------------HHHHH-HcC-CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IMQ---------------VSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~~---------------~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ...+. ..+ .+++++||++|.|+.+++..+.+.+..
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 121 NERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 111 11111 223 468999999999999999999876653
No 330
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=9.7e-16 Score=145.92 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
.+|+++|.+|||||||+++|++..+.. .. .|.........+....+.+|||||...+..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~--~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~----------------- 59 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TV--STVGGAFYLKQWGPYNISIWDTAGREQFHG----------------- 59 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CC--CccceEEEEEEeeEEEEEEEeCCCcccchh-----------------
Confidence 378999999999999999999776422 11 232222223334556789999999865332
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH--HHHHHHHccCCCeEEEEeccCCCCh----
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPR---- 317 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~--~~~~l~~~~~~~p~ivv~NK~D~~~---- 317 (549)
....++..+|++|+|+|.+...+..... +.........+.|+++|+||+|+..
T Consensus 60 ---------------------l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~ 118 (220)
T cd04126 60 ---------------------LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGAL 118 (220)
T ss_pred ---------------------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc
Confidence 1224567899999999988754444332 2222222234689999999999864
Q ss_pred ---------------hhH---HhHHHHH-HcC--------------CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 ---------------KGI---MQVSEFW-SLG--------------FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ---------------~~~---~~~~~~~-~~~--------------~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... .+...+. ..+ .+++++||++|.|+.+++..+.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 119 AGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 111 1111121 112 468999999999999999988876653
No 331
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.65 E-value=1.7e-15 Score=137.65 Aligned_cols=146 Identities=22% Similarity=0.271 Sum_probs=94.5
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|.+|||||||++++...... ...| |.......+.+....+.+|||||...+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~~~------------------- 58 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------------------- 58 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCC--CCCcceEEEEECCEEEEEEECCCCHhHH-------------------
Confidence 7999999999999999999654432 2222 2223333455667789999999985421
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChhhH-
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGI- 320 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~- 320 (549)
.....++..+|++|+|+|++...+... ..+...+.. ...+.|+++++||+|+.+...
T Consensus 59 -------------------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 119 (159)
T cd04150 59 -------------------PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119 (159)
T ss_pred -------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH
Confidence 123356788999999999876432221 112222221 123589999999999864311
Q ss_pred HhHHHHHH------cCCCceEeeccCCCChhhhHHHHH
Q 008909 321 MQVSEFWS------LGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 321 ~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
.+....+. ..+.++++||++|.|+.++++++.
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 11111111 122467899999999999998875
No 332
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.1e-15 Score=156.56 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=122.3
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc--CCCeEEEEeCCCccchhhhccCCChhhhh
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
.+.+.|+++|+...|||||+..+-+.+ +......|.|.+.-...+... +...+.++|||||+-|..+-
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mR--------- 72 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMR--------- 72 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHH---------
Confidence 356789999999999999999998775 445566688888776666654 34789999999997764321
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHH--Hhc--CC
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK--LRA--LD 522 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~--l~~--~~ 522 (549)
.+...-+|+++||||+.+++.+|+.+.++.++..+.|++|++||+|+......... .++.+. ... -+
T Consensus 73 -----aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~----~el~~~gl~~E~~gg 143 (509)
T COG0532 73 -----ARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVK----QELQEYGLVPEEWGG 143 (509)
T ss_pred -----hcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHH----HHHHHcCCCHhhcCC
Confidence 12456789999999999999999999999999999999999999999865433222 221111 000 12
Q ss_pred CCCEEEEccccCCCHHHHHHHHHh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
...++|+||++|.|+++|++.+.-
T Consensus 144 ~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 144 DVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred ceEEEEeeccCCCCHHHHHHHHHH
Confidence 246999999999999999998753
No 333
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.65 E-value=1.2e-15 Score=140.81 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|++|+|||||+++|.+...... ..|.......+.+++..+.+|||||...+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~----------------- 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESLR----------------- 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHHH-----------------
Confidence 46899999999999999999987653322 223334445566778889999999985422
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcc--hHHHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....++..+|++++|+|++.+.... ...+...+.. ...+.|+++++||+|+....
T Consensus 74 ---------------------~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~ 132 (174)
T cd04153 74 ---------------------SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132 (174)
T ss_pred ---------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC
Confidence 12335577899999999987643221 1122222222 12368999999999986421
Q ss_pred -HHhHHHHH------HcCCCceEeeccCCCChhhhHHHHHH
Q 008909 320 -IMQVSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 320 -~~~~~~~~------~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
........ ..+++++++||++|.|++++++++.+
T Consensus 133 ~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 133 TPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 11111111 12346799999999999999988753
No 334
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.65 E-value=1.6e-15 Score=138.03 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=101.1
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|+|||||++++++... .....+++.........+++ ..+.+|||||...+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------------- 63 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA---------------- 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH----------------
Confidence 799999999999999999997642 23444444444444445554 4588999999754321
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....+..++.+++|+|...+-+... .....++.. ...+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 121 (164)
T cd04139 64 ----------------------IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR 121 (164)
T ss_pred ----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc
Confidence 22245677899999999876432211 112222222 12478999999999986521
Q ss_pred ---HHhH-HHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 ---IMQV-SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ---~~~~-~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... ......+.+++++||++|.|+.++++.+.+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 122 QVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111 112235678999999999999999999876653
No 335
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=1.5e-15 Score=138.97 Aligned_cols=150 Identities=19% Similarity=0.104 Sum_probs=98.7
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee--CCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||+++|.+.... ...+.+.... .....+ .+..+.+|||||......
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~---------------- 62 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRA---------------- 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhH----------------
Confidence 7999999999999999999976532 2233322211 122223 335688999999864211
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
.+...+..+|++++|+|...+.+.... .+...++....+.|+++|+||+|+.+...
T Consensus 63 ----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 63 ----------------------NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred ----------------------HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 223446789999999998876554442 24444554445789999999999865432
Q ss_pred H----hHHHHH--Hc-C-CCceEeeccCCCChhhhHHHHHHHh
Q 008909 321 M----QVSEFW--SL-G-FSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 321 ~----~~~~~~--~~-~-~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
. ...... .. . .+++++||++|.|+.+++..+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 121 QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 1 111111 11 2 2688999999999999998886654
No 336
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.65 E-value=1e-15 Score=139.54 Aligned_cols=153 Identities=19% Similarity=0.166 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcc-ccceeeeeeeC-C--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
.+|+++|.+|||||||+++|.+........+..++ .+.....+.+. + ..+.+|||||...+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------- 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS-------------- 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH--------------
Confidence 37999999999999999999854212222232222 22222233332 2 568999999974321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++++|+|.+.+.+.... .+...+.....+.|+++|+||+|+.+.
T Consensus 67 ------------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 67 ------------------------DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK 122 (164)
T ss_pred ------------------------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 1223556889999999998764332211 233333333246899999999998654
Q ss_pred hHHh---HHH-HHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 319 GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 319 ~~~~---~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.... ... ....+.+++++||++|.|+.++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 123 AEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 2111 111 22345678999999999999999988764
No 337
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.65 E-value=1.6e-15 Score=141.18 Aligned_cols=154 Identities=17% Similarity=0.167 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee---CCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+|+++|.+|||||||++++.+.... ...+..........+.. .+..+.+|||||...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------------- 66 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------------- 66 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH--------------
Confidence 468999999999999999999876532 22222222222222222 34678999999975421
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~ 316 (549)
......+..+|++++|+|++.+.+.... .....+.. ...+.|+++|+||+|+.
T Consensus 67 ------------------------~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 67 ------------------------PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred ------------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 1233456789999999998764222211 11111211 12368999999999986
Q ss_pred hhh-HHhHHHHHH---c----CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 317 RKG-IMQVSEFWS---L----GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 317 ~~~-~~~~~~~~~---~----~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ......+.. . +.+++++||++|.|+.++++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 123 NALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 421 111111111 1 234789999999999999999987774
No 338
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.65 E-value=2.4e-15 Score=137.57 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=99.4
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcc-ccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.+|+++|.+|||||||++++.+... ....+.++ .+.....+.+++. .+.+|||||...+.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 65 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR--------------- 65 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 5799999999999999999997642 22222222 2222233445553 57899999975422
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++|+|+|.+.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 66 -----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 66 -----------------------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred -----------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 1233567889999999998875433222 122222221 246799999999998654
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... ....+ ...+++++++||++|.|+.+++..+...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 221 11222 23466889999999999999988887654
No 339
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65 E-value=1.2e-15 Score=140.21 Aligned_cols=154 Identities=19% Similarity=0.119 Sum_probs=100.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||++++++.... ....+....+.....+.++| ..+.+|||||...+..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------------- 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC---------------- 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh----------------
Confidence 6899999999999999999986521 12222222333334445555 4589999999865322
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHH-cc-CCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NY-MDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~-~~-~~~p~ivv~NK~D~~~~~ 319 (549)
.....++.+|++++|+|+....+... ..++..+.+ .. ...|+++|+||+|+.+..
T Consensus 65 ----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 65 ----------------------IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred ----------------------hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 22355788999999999876322221 123333322 21 235789999999986432
Q ss_pred HH-----hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IM-----QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~-----~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ....+ ...+.+++++||++|.|+.+++..+...+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 123 QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11 11112 2345678999999999999999998877654
No 340
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=1.6e-15 Score=130.06 Aligned_cols=116 Identities=38% Similarity=0.610 Sum_probs=93.0
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||+|+|++.+...++..+++|+......+.+ ++..+.++||||+.+.... .........++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~-----~~~~~~~~~~~ 74 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQ-----DNDGKEIRKFL 74 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHH-----HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchh-----hHHHHHHHHHH
Confidence 48999999999999999999977778999999999986555543 6778899999999653211 01012355677
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEec
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNK 495 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK 495 (549)
+.+..+|++++|+|+.++.+..+..++++++ .++|+++|+||
T Consensus 75 ~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 8889999999999988866667778888886 88999999998
No 341
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.65 E-value=1.4e-15 Score=140.08 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=99.1
Q ss_pred EEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 166 I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
|+++|.+|||||||++++++.... ..+..+........+.+++. .+.+|||||...+....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------------- 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR--------------- 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhc---------------
Confidence 579999999999999999986532 22222222222334455554 47899999986543322
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhhH-
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~~- 320 (549)
...+..+|++|+|+|.+.+.+.... .+...+.....+.|+++|+||+|+.....
T Consensus 64 -----------------------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 120 (174)
T smart00174 64 -----------------------PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST 120 (174)
T ss_pred -----------------------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh
Confidence 1346779999999998865433322 23444444446899999999999865221
Q ss_pred --------------HhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHh
Q 008909 321 --------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 321 --------------~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.....+ ...+. .++++||++|.|+++++..+.+.+
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 000111 22343 789999999999999999887654
No 342
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.65 E-value=1.6e-15 Score=139.95 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+.++++... ...+..+........+.+++ ..+.+|||||...+....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------- 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR------------- 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh-------------
Confidence 4799999999999999999987542 22232322222223344555 457899999986543221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..++..+|++|+|+|.+++.+.... .+...+.....+.|+++|+||+|+.+..
T Consensus 67 -------------------------~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 67 -------------------------PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121 (174)
T ss_pred -------------------------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccCh
Confidence 2456789999999999875444433 2344444444578999999999985421
Q ss_pred H------------H---hHHHHH-HcC-CCceEeeccCCCChhhhHHHHHH
Q 008909 320 I------------M---QVSEFW-SLG-FSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 320 ~------------~---~~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
. . ....+. ..+ .+++++||++|.|++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 1 0 011111 233 36799999999999999988764
No 343
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=1.1e-15 Score=146.19 Aligned_cols=156 Identities=19% Similarity=0.114 Sum_probs=103.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce-eeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...+|+++|.+|||||||+++++..... ...++.+.+. ....+..++ ..+.+|||||...+...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 78 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKFGGL----------- 78 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeE--EEEEEEECCeEEEEEEEECCCchhhhhh-----------
Confidence 4578999999999999999998755421 1122222222 222233333 57899999998764321
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
...++..++++|+|+|.+.+.+.... .++..+.+...+.|+++|+||+|+..
T Consensus 79 ---------------------------~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 79 ---------------------------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred ---------------------------hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 12456789999999998875443332 23344444445789999999999864
Q ss_pred hhHH-hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIM-QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~-~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... ....+ ...+++++++||++|.|+.+++.++...+..
T Consensus 132 ~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred ccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 3211 11122 2346678999999999999999999876643
No 344
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.65 E-value=9.5e-15 Score=149.72 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=93.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCC----CCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhh
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI----SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~----~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~ 445 (549)
....+.++|..++|||.+++.++|..... +.. +..+.+.+... .....+.+-|.+-. .... ..+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~---g~~k~LiL~ei~~~-~~~~------l~~- 491 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK---GQQKYLILREIGED-DQDF------LTS- 491 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeec---cccceEEEeecCcc-cccc------ccC-
Confidence 34578899999999999999999975433 221 12222222211 11223444444422 1100 000
Q ss_pred hHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHH--hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 446 ~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
+. ..||+++++||++++-..+-+..+..... ...|+++|+.|+|+....+.... +..+.+.+.+.
T Consensus 492 -------ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~i-----qpde~~~~~~i 558 (625)
T KOG1707|consen 492 -------KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSI-----QPDEFCRQLGL 558 (625)
T ss_pred -------cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCC-----ChHHHHHhcCC
Confidence 01 67999999999997665555554433322 47999999999999765443211 12455666677
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+.+.+|.++... .++|..|+.+
T Consensus 559 ~~P~~~S~~~~~s-~~lf~kL~~~ 581 (625)
T KOG1707|consen 559 PPPIHISSKTLSS-NELFIKLATM 581 (625)
T ss_pred CCCeeeccCCCCC-chHHHHHHHh
Confidence 7788899885333 8899888764
No 345
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=1.1e-15 Score=138.72 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=94.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
+|+++|.+|||||||+++|.+.......+ |.......+.+. ...+.+|||||...+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------------ 58 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIP----TVGFNVEMLQLEKHLSLTVWDVGGQEKMR------------------ 58 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccC----ccCcceEEEEeCCceEEEEEECCCCHhHH------------------
Confidence 58999999999999999999876432222 222223333333 3579999999975321
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChhh-
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG- 319 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~- 319 (549)
......+..+|++++|+|++.+.+... ..+...+.. ...+.|+++|+||+|+....
T Consensus 59 --------------------~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (160)
T cd04156 59 --------------------TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118 (160)
T ss_pred --------------------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC
Confidence 123345778999999999887542221 122222222 12478999999999985421
Q ss_pred HHhHHHHHH-------cCCCceEeeccCCCChhhhHHHHH
Q 008909 320 IMQVSEFWS-------LGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 320 ~~~~~~~~~-------~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
......... .+++++++||++|.|++++++.+.
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 111111111 123578999999999999998875
No 346
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.2e-15 Score=145.73 Aligned_cols=165 Identities=24% Similarity=0.321 Sum_probs=119.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..-|+++|.||+|||||++++...+ +.+.++|+||..+..+.+.+. +..+.+.|.||+......-..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G----------- 226 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG----------- 226 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC-----------
Confidence 5679999999999999999999876 789999999999999999874 456999999999874432211
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC---cchHH-HHHHHHH---ccCCCeEEEEeccCC
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT---AADEE-IADWLRK---NYMDKFIILAVNKCE 314 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~---~~~~~-~~~~l~~---~~~~~p~ivv~NK~D 314 (549)
+...+++++.+|-++++|+|.+.... ..+.. +...|.+ .+.++|.++|+||+|
T Consensus 227 --------------------LG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 227 --------------------LGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred --------------------ccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 24578899999999999999874322 12222 2222322 346899999999999
Q ss_pred CChh--hHHhHHHHHH--cCCCc-eEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 315 SPRK--GIMQVSEFWS--LGFSP-LPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 315 ~~~~--~~~~~~~~~~--~~~~~-v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
+... .......... .++.. +++||.++.|++.|+..+.+.+.+..
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 5432 2222222222 23332 23999999999999999988877543
No 347
>PLN03118 Rab family protein; Provisional
Probab=99.65 E-value=9e-16 Score=146.20 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=103.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+++|++....... +..+.......+.+++ ..+.+|||||...+..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT------------- 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhHH-------------
Confidence 3578999999999999999999977532222 2222222233344554 4678999999865322
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH--HHHHHHHc--cCCCeEEEEeccCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKN--YMDKFIILAVNKCES 315 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~--~~~~l~~~--~~~~p~ivv~NK~D~ 315 (549)
....++..+|++|+|+|...+.+..... +...+... ..+.|+++|+||+|+
T Consensus 78 -------------------------~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 78 -------------------------LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred -------------------------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 2235677899999999988654333322 22222211 235789999999998
Q ss_pred ChhhHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 316 PRKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 316 ~~~~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...... .... ....+.+++++||++|.|+++++..+...+..
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 643211 1111 22345678999999999999999999887754
No 348
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=2.8e-15 Score=137.63 Aligned_cols=152 Identities=17% Similarity=0.158 Sum_probs=100.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcc-ccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+|+++|.+|||||||++++++.... +..+.+++ .......+.++| ..+.+|||+|...+....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~----------- 71 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN----------- 71 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc-----------
Confidence 568999999999999999999987532 13333333 223334455666 457889999986543221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
..++..+|++++|+|++.+.+.. .+..++... ..+.|+++|+||+|+.+
T Consensus 72 ---------------------------~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 72 ---------------------------DAELAACDVACLVYDSSDPKSFS--YCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred ---------------------------hhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 24568899999999987653222 222333321 23689999999999864
Q ss_pred hhHH---hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHh
Q 008909 318 KGIM---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 318 ~~~~---~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.... ....+ ...+. .++++||++|.|+.++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 123 QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred cccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 3211 11122 22344 469999999999999999887654
No 349
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=3.3e-15 Score=137.93 Aligned_cols=151 Identities=23% Similarity=0.260 Sum_probs=97.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.+|+|||||++++...... ...| |.......+.+.+..+.+|||||...+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~----------------- 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIP--TIGFNVETVTYKNISFTVWDVGGQDKIR----------------- 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccccceEEEEECCEEEEEEECCCChhhH-----------------
Confidence 578999999999999999999644322 2222 2233333455667789999999975421
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcc--hHHHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....++..+|++|+|+|++.+.+.. ...+...+.. ...+.|+++|+||+|+....
T Consensus 72 ---------------------~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 72 ---------------------PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred ---------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 12335678899999999987643222 1122222222 12468999999999986431
Q ss_pred H-HhHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 320 I-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 320 ~-~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
. .+...... ..+.++++||++|.|+.++++++...+
T Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 131 KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1 11111111 122466899999999999999987654
No 350
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.65 E-value=3.7e-15 Score=135.46 Aligned_cols=152 Identities=16% Similarity=0.099 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+++|++..... ...+..+.......+.+++ ..+.+|||||...+..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------------- 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS--------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH---------------
Confidence 379999999999999999999765321 2222222333333444555 4578999999854221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....+..+|++++|+|.+.+.+.... .++..+.. ...+.|+++|+||+|+....
T Consensus 65 -----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 65 -----------------------VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred -----------------------hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 233556789999999998875443322 22222222 22478999999999986532
Q ss_pred HH---hHH-HHHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 320 IM---QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 320 ~~---~~~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.. ... .....++.++++||+++.|+.++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 122 EVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 11 111 123456789999999999999999988654
No 351
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.64 E-value=2.5e-15 Score=140.70 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=100.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.+|+|||||+++|.+..... ...|.....+.+.+++..+.+|||||...+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~----~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~----------------- 77 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQ----HVPTLHPTSEELTIGNIKFKTFDLGGHEQAR----------------- 77 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcc----cCCccCcceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 6789999999999999999999765322 1224444556677788899999999975421
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcc--hHHHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....++..+|.+++|+|++..-+.. ...+...+.. ...+.|+++++||+|+....
T Consensus 78 ---------------------~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~ 136 (190)
T cd00879 78 ---------------------RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV 136 (190)
T ss_pred ---------------------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc
Confidence 12335667899999999987542211 1112222221 12468999999999986421
Q ss_pred -HHhHHHHHH-----------------cCCCceEeeccCCCChhhhHHHHHHH
Q 008909 320 -IMQVSEFWS-----------------LGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 320 -~~~~~~~~~-----------------~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
......+.. ....++++||++|.|+.++++++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 137 SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 111122211 11357999999999999999998654
No 352
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=166.74 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=109.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeec----------CCC----------------------CceeeeeEEEEeccC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS----------PIS----------------------GTTRDAIDTEFTGPE 418 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~----------~~~----------------------gtt~~~~~~~~~~~~ 418 (549)
..+|+++|++++|||||+++|+........ ... |+|++.....+. ++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~-~~ 102 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA-TP 102 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc-cC
Confidence 357999999999999999999975433221 122 455555544554 46
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhC-CcEEEEEeccc
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKWD 497 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~-~p~ivv~NK~D 497 (549)
+.++.++||||+.+| ...+...+..+|++++|+|+..+...++.+.+..+...+ .++|||+||+|
T Consensus 103 ~~~~~liDtPG~~~f--------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 103 KRKFIVADTPGHEQY--------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CceEEEEECCChHHH--------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 778999999999654 223445688999999999999988888877777777666 56888999999
Q ss_pred CCCCCchhhhHHHHHHHHHHHhcCCC--CCEEEEccccCCCHHH
Q 008909 498 TIPNKNQQTATYYEQDVREKLRALDW--APIVYSTAIAGQSVDK 539 (549)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~iSA~~g~~v~~ 539 (549)
+..... ...+.+..++.+.++..++ .+++|+||++|.|+++
T Consensus 169 ~~~~~~-~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQ-EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchh-HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 975222 2223344555555554443 5799999999999874
No 353
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.64 E-value=2.6e-15 Score=139.44 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=99.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|..|||||||++++++.... ....+....+.....+.+++ ..+.+|||+|...+..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~--------------- 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN--------------- 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH---------------
Confidence 37999999999999999999876532 11222222233334556666 4578999999865322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCCh--
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR-- 317 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~-- 317 (549)
....++..+|++++|+|.+++.+.... .+...+.+.. ...| ++|+||+|+..
T Consensus 65 -----------------------~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 65 -----------------------MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred -----------------------hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 122457889999999998875443332 2333333321 2345 68899999852
Q ss_pred --hh---HHh-HHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 --KG---IMQ-VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 --~~---~~~-~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ... ...+ ...+.+++++||++|.|+++++..+.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred cchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11 111 1112 2345678999999999999999999876654
No 354
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3.4e-15 Score=151.37 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=126.2
Q ss_pred cccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhh
Q 008909 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 367 ~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
.+.+.+.|.++|+...|||||+..+.+..+. .....|+|.+.-...+.++.|..+.++|||||.-|..+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aM---------- 217 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAM---------- 217 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHH----------
Confidence 3457789999999999999999999887643 45556888887666777778999999999999554321
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC-CCCC
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-DWAP 525 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 525 (549)
..+..+.+|++++||-+.+++.+|..+.++.++..+.|+||++||||.........+.++..+ .-.+..+ +..+
T Consensus 218 ----RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 218 ----RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GIVVEDLGGDVQ 292 (683)
T ss_pred ----HhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-CccHHHcCCcee
Confidence 123567889999999999999999999999999999999999999998765443332222111 0011222 4468
Q ss_pred EEEEccccCCCHHHHHHHHHh
Q 008909 526 IVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~ 546 (549)
++|+||++|.|++.|-+.+.-
T Consensus 293 vipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILL 313 (683)
T ss_pred EEEeecccCCChHHHHHHHHH
Confidence 999999999999999987743
No 355
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=2.3e-15 Score=136.78 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=97.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+++|++..... ...+..+.+.....+.+.+ ..+.+|||||...+..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------- 64 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT--------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh---------------
Confidence 379999999999999999999775322 1222222222223334444 4689999999754322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
.....++.+|++++|+|...+.+..... +...+... ..+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 65 -----------------------LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred -----------------------hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 1224567899999999987644333221 22333332 246889999999998732
Q ss_pred hHH--hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 319 GIM--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 319 ~~~--~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
... .... ....+++++++||++|.|+.++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 122 EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 211 1111 12346789999999999999999887654
No 356
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=1.4e-15 Score=143.38 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=101.8
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||++++++.... ..+..++.......+.+.+ ..+.+|||||...+..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------------- 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA---------------- 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----------------
Confidence 5899999999999999999976532 2333444444444556666 4678999999865322
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc--cCCCeEEEEeccCCCChh-
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPRK- 318 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ivv~NK~D~~~~- 318 (549)
....++..+|++|+|+|..++.+..... +...+... ..+.|+++|+||+|+...
T Consensus 63 ----------------------~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 63 ----------------------MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred ----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 1124567899999999987643333221 22222221 136899999999998652
Q ss_pred hHH---hHHHHH--HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIM---QVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~---~~~~~~--~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ...... ..+.+++++||++|.|+.++++.+.+.+.
T Consensus 121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 211 111111 23457899999999999999999987664
No 357
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=4.8e-15 Score=133.43 Aligned_cols=154 Identities=29% Similarity=0.395 Sum_probs=111.7
Q ss_pred EEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhcccccCC
Q 008909 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (549)
Q Consensus 168 i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi 246 (549)
++|++|+|||||+|+|++.........+++|.........+. +..+.+|||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---------------- 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---------------- 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh----------------
Confidence 579999999999999998875556777788877777666655 678999999999765443221
Q ss_pred chhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHH--
Q 008909 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-- 324 (549)
Q Consensus 247 ~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~-- 324 (549)
....+...+..+|++++|+|+..+.......+...... .+.|+++|+||+|+.........
T Consensus 65 ---------------~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 65 ---------------REELARRVLERADLILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred ---------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHH
Confidence 01234456788999999999988766655543333333 38999999999998765332221
Q ss_pred -----HHHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 325 -----EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 325 -----~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.....+.+++++||+++.|+.++++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 128 LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 112234578999999999999999887653
No 358
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=2.6e-15 Score=138.81 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=100.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++.+... ...+..+........+.+++ ..+.+|||+|...+....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~------------- 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVR------------- 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcc-------------
Confidence 4799999999999999999997642 22222222222223445555 357899999986543322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh-
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK- 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~- 318 (549)
..++..+|++|+|+|.+.+.+.... .+...+.+...+.|+++|+||+|+.+.
T Consensus 67 -------------------------~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 67 -------------------------PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL 121 (178)
T ss_pred -------------------------hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh
Confidence 1456789999999999876555542 344555555567899999999998531
Q ss_pred -----------h-H--HhHHHH-HHcCC-CceEeeccCCCC-hhhhHHHHHH
Q 008909 319 -----------G-I--MQVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCS 353 (549)
Q Consensus 319 -----------~-~--~~~~~~-~~~~~-~~v~vSA~~g~g-i~~L~~~i~~ 353 (549)
. . .+...+ ...+. +++++||++|.+ +.+++..+..
T Consensus 122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 122 STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 0 1 111122 23454 689999999995 9999988766
No 359
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.64 E-value=3.3e-15 Score=135.98 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=98.7
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|+|||||++++++.... ....+....+.....+.+++ ..+.+|||||...+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---------------- 64 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT---------------- 64 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh----------------
Confidence 6899999999999999999976532 12222222333334455555 3578999999754322
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~~~ 320 (549)
.....+..+|++++|+|...+-+.... .+...+.... .+.|+++|.||+|+.....
T Consensus 65 ----------------------~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 65 ----------------------ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred ----------------------hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 222456789999999998764333221 1222222222 3689999999999865331
Q ss_pred ---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 321 ---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 321 ---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.....+ ...+.+++++||++|.|+.+++..+.+.
T Consensus 123 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 111122 2345678999999999999999988653
No 360
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.64 E-value=3.1e-15 Score=142.70 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=106.9
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeee------------------cCCCCceeeeeEEEEec----cCCCeEEEEeCCCc
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIV------------------SPISGTTRDAIDTEFTG----PEGQKFRLIDTAGI 430 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~------------------~~~~gtt~~~~~~~~~~----~~~~~i~l~DTpG~ 430 (549)
+|+++|+.++|||||++++++...... ....|++.......+.+ .....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987432211 01123444333323222 12357899999999
Q ss_pred cchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC-------Cc
Q 008909 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN-------KN 503 (549)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~-------~~ 503 (549)
.++. ..+..+++.+|++++|+|++++...+...+++.+...++|+++|+||+|+... ..
T Consensus 82 ~~f~--------------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~ 147 (213)
T cd04167 82 VNFM--------------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA 147 (213)
T ss_pred cchH--------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence 7652 23455789999999999999888777777777777778999999999998621 11
Q ss_pred hhhhHHHHHHHHHHHhcCCC------C----CEEEEccccCCCHH--------HHHHHHHh
Q 008909 504 QQTATYYEQDVREKLRALDW------A----PIVYSTAIAGQSVD--------KYVLYLAT 546 (549)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~~~------~----~~i~iSA~~g~~v~--------~L~~~l~~ 546 (549)
.....+..+.+...++.... . .+++.||+.+++++ +|++.|..
T Consensus 148 ~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~ 208 (213)
T cd04167 148 YFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVS 208 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHh
Confidence 12222333444444443322 2 37889999998876 66666654
No 361
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.64 E-value=2.4e-15 Score=140.91 Aligned_cols=153 Identities=15% Similarity=0.083 Sum_probs=101.6
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|..|||||||+.++....+. ..+..+........+.+++ ..+.+|||+|...+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l-------------- 67 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRL-------------- 67 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhh--------------
Confidence 58999999999999999999976421 1222222122222334555 45788999998764332
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH--HHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~--~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
...++..+|++|+|+|.+++.+..... +...+.....+.|+++|+||.|+.+..
T Consensus 68 ------------------------~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 68 ------------------------RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred ------------------------hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 124567899999999998765544332 333344334578999999999986431
Q ss_pred H---------------HhHHHHH-HcC-CCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 I---------------MQVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~---------------~~~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. .+...+. ..+ .+++++||++|.|+.+++..+.+.+.
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 1 0111121 234 47899999999999999999987654
No 362
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=3.6e-15 Score=136.19 Aligned_cols=152 Identities=17% Similarity=0.202 Sum_probs=100.3
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||+++++.... ...++.++.......+.+++. .+.+|||||.......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------------- 63 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------------- 63 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc---------------
Confidence 489999999999999999986532 333444443333444556664 4789999998641110
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc---cCCCeEEEEeccCCCChh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~---~~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++|+|+|.+.+.+.... .+..++... ..+.|+++|+||+|+...
T Consensus 64 ----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 64 ----------------------QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred ----------------------hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 123556789999999998875433322 233334332 237899999999998543
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCC-CChhhhHHHHHHHh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISG-TGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g-~gi~~L~~~i~~~l 355 (549)
... ....+ ...+.+++++||++| .|+.+++..+.+.+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 122 RQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 211 11112 234667899999999 49999999887654
No 363
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.63 E-value=2.7e-15 Score=139.07 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||++++++... ...+..+........+.+++. .+.+|||+|...+...
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~------------ 69 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV------------ 69 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhh------------
Confidence 356899999999999999999997642 222322222222334455553 5789999998654321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
...++..+|++|+|+|.+.+.+.... .+...+.....+.|+++|+||+|+.+
T Consensus 70 --------------------------~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 70 --------------------------RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred --------------------------hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 12457889999999999876555442 34445555445789999999999853
Q ss_pred h------------h-H--HhHHHHH-HcCC-CceEeeccCCCC-hhhhHHHHHH
Q 008909 318 K------------G-I--MQVSEFW-SLGF-SPLPISAISGTG-TGELLDLVCS 353 (549)
Q Consensus 318 ~------------~-~--~~~~~~~-~~~~-~~v~vSA~~g~g-i~~L~~~i~~ 353 (549)
. . . .+...+. ..+. +++++||++|.| +.+++..+..
T Consensus 124 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 124 DLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred ChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 1 0 1 1112222 3453 789999999998 9999987765
No 364
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.63 E-value=3.5e-15 Score=137.47 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||++++.+.. ....+..++.+.....+.+++ ..+.+|||||...+.....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRP------------ 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccc------------
Confidence 368999999999999999998654 233444444444444455655 3578899999865433221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..+..+|++|+|+|.+++.+.... .+...+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 120 (173)
T cd04130 67 --------------------------LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120 (173)
T ss_pred --------------------------cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccCh
Confidence 345789999999998875444332 2444444433478999999999986421
Q ss_pred ------------H---HhHHHHH-HcCC-CceEeeccCCCChhhhHHHHH
Q 008909 320 ------------I---MQVSEFW-SLGF-SPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 320 ------------~---~~~~~~~-~~~~-~~v~vSA~~g~gi~~L~~~i~ 352 (549)
. .....+. ..+. .++++||++|.|++++++.+.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 0 0111121 2344 789999999999999988764
No 365
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=4.3e-15 Score=137.87 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|..|+|||||++++........ . .|.......+.+.+..+.+|||||...+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~--~--pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~----------------- 75 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT--I--PTIGFNVETVEYKNISFTVWDVGGQDKIR----------------- 75 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccc--c--CCcceeEEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 56899999999999999999986543222 1 22233334456677889999999975321
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....++..+|++|+|+|++++.+... .++...+.. ...+.|+++++||+|+....
T Consensus 76 ---------------------~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 76 ---------------------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred ---------------------HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 233456788999999999886433221 112222221 22478999999999986532
Q ss_pred HHh-HHHHHHc------CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 IMQ-VSEFWSL------GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~~~-~~~~~~~------~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ....... .+.++++||++|+|+.++++++.+.+.
T Consensus 135 ~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 211 1112211 113568999999999999999977654
No 366
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.63 E-value=4.6e-15 Score=134.64 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=99.1
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+|+|++..... ...+.++.......+.+.+. .+.+|||||...+..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------------- 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA--------------- 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH---------------
Confidence 379999999999999999999775322 22223333333444444443 578999999643221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~~ 319 (549)
.....+..+|++++|+|..++.+.... .+...+.... .+.|+++|+||+|+....
T Consensus 65 -----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 65 -----------------------LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred -----------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 122345679999999998765333222 1222233221 268999999999987432
Q ss_pred H---HhHH-HHHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 320 I---MQVS-EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 320 ~---~~~~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
. .... .....+.+++++||+++.|+.++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 122 VVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 1 1111 1233567789999999999999999987653
No 367
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.63 E-value=4.4e-15 Score=134.51 Aligned_cols=147 Identities=22% Similarity=0.231 Sum_probs=97.3
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|.+|+|||||++++++..... ...|.......+.+.+..+.+|||||...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------------ 58 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT----TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP------------------ 58 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCcCcceEEEEECCEEEEEEECCCChhhHH------------------
Confidence 58999999999999999999876222 22233334445566778899999999764211
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHH-HHHH-ccCCCeEEEEeccCCCChhhHH
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIAD-WLRK-NYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~-~l~~-~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
.....+..+|++++|+|+..+...... ..+. .+.. ...+.|+++++||+|+......
T Consensus 59 --------------------~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 118 (158)
T cd00878 59 --------------------LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV 118 (158)
T ss_pred --------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH
Confidence 223556788999999998864222211 1222 2221 1247899999999998753311
Q ss_pred h-HHHHHH------cCCCceEeeccCCCChhhhHHHHHH
Q 008909 322 Q-VSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 322 ~-~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
. ...... ...+++++||++|.|+.++++.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 1 111111 2236899999999999999888753
No 368
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.63 E-value=2.4e-15 Score=137.96 Aligned_cols=150 Identities=16% Similarity=0.160 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+++|++.... .....+..+.........+ ..+.+|||||+..+.....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~------------ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP------------ 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccch------------
Confidence 37999999999999999999977531 1122222222223333333 4589999999875432211
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..+..+|++++|+|.+.+.+... ..+...+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 67 --------------------------LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred --------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 23467999999999876433322 22334444444479999999999986543
Q ss_pred HH--------------hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHH
Q 008909 320 IM--------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 320 ~~--------------~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
.. ....+ ...+. +++++||++|.|+.+++..+.+
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 121 NTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 21 11111 22344 7899999999999999988753
No 369
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.8e-15 Score=153.38 Aligned_cols=154 Identities=21% Similarity=0.277 Sum_probs=122.4
Q ss_pred CCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-CCceEEEEEcccccccCCCCcchhhhhhh
Q 008909 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 159 ~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
...+.|.|-|+||.+.|||||+++|++.. .-.....|+|++.....+.+ .|..+.+.||||+.-|..
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~-VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a----------- 216 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSS-VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA----------- 216 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCc-eehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH-----------
Confidence 34578999999999999999999999887 34566789999998777655 678899999999965432
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
.-.+...-+|++++||.+.++..++..+.+...+.. +.|+++++||||...
T Consensus 217 ---------------------------MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A--~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 217 ---------------------------MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA--NVPIVVAINKIDKPG 267 (683)
T ss_pred ---------------------------HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhc--CCCEEEEEeccCCCC
Confidence 112556778999999999999999999999888876 999999999999875
Q ss_pred hhHHhH-HHHHHc---------CCCceEeeccCCCChhhhHHHHHH
Q 008909 318 KGIMQV-SEFWSL---------GFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 318 ~~~~~~-~~~~~~---------~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
...... .++... +..++|+||++|.|++.|.+.+.-
T Consensus 268 a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 268 ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 443322 222222 346899999999999998877654
No 370
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=4.7e-15 Score=142.08 Aligned_cols=154 Identities=16% Similarity=0.067 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||+|++++++..+ ...+..+........+.+++ ..+.||||+|...+..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~-------------- 76 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN-------------- 76 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH--------------
Confidence 46899999999999999999997642 22222222222223345555 4578999999765322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
....++..+|++|+|+|.+.+.+... ..+...+.....+.|+++|+||+|+...
T Consensus 77 ------------------------~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 132 (232)
T cd04174 77 ------------------------VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD 132 (232)
T ss_pred ------------------------HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 22246788999999999987655543 2344555544457899999999998531
Q ss_pred ------------h-H--HhHHHHH-HcCC-CceEeeccCCC-ChhhhHHHHHHHhh
Q 008909 319 ------------G-I--MQVSEFW-SLGF-SPLPISAISGT-GTGELLDLVCSELK 356 (549)
Q Consensus 319 ------------~-~--~~~~~~~-~~~~-~~v~vSA~~g~-gi~~L~~~i~~~l~ 356 (549)
. + .+...+. ..+. .++++||++|. |+.+++..+...+.
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 1 1 1112222 3465 47899999998 89999998876654
No 371
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.63 E-value=2.4e-15 Score=158.34 Aligned_cols=147 Identities=24% Similarity=0.260 Sum_probs=105.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceee------------------------------ecCCCccccceeeeeeeCCc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWGEH 211 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 211 (549)
...+|+++||+|+|||||+++|+....... ...+|+|.+.....+.+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 357899999999999999999985432211 11578999998888888899
Q ss_pred eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCC--CCCcc
Q 008909 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA--GLTAA 289 (549)
Q Consensus 212 ~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~--~~~~~ 289 (549)
.+.+|||||+.++.. .+...+..+|++|+|+|+.. +...+
T Consensus 85 ~i~liDtpG~~~~~~--------------------------------------~~~~~~~~aD~~ilVvDa~~~~~~~~~ 126 (425)
T PRK12317 85 YFTIVDCPGHRDFVK--------------------------------------NMITGASQADAAVLVVAADDAGGVMPQ 126 (425)
T ss_pred EEEEEECCCcccchh--------------------------------------hHhhchhcCCEEEEEEEcccCCCCCcc
Confidence 999999999854221 22244678999999999988 66666
Q ss_pred hHHHHHHHHHccCCCeEEEEeccCCCChhhH---H----hHHHHH-HcC-----CCceEeeccCCCChhhh
Q 008909 290 DEEIADWLRKNYMDKFIILAVNKCESPRKGI---M----QVSEFW-SLG-----FSPLPISAISGTGTGEL 347 (549)
Q Consensus 290 ~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~---~----~~~~~~-~~~-----~~~v~vSA~~g~gi~~L 347 (549)
..++..++... ...++++++||+|+..... . +...+. ..+ .+++++||++|.|+.++
T Consensus 127 ~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 127 TREHVFLARTL-GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred hHHHHHHHHHc-CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 66666665543 2246899999999874211 1 111121 223 36899999999999863
No 372
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.63 E-value=4.5e-15 Score=154.85 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=108.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCC--eeecCCCCceeeeeEEEEe--------------c-----------cCCCeEE
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFT--------------G-----------PEGQKFR 423 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~--~~~~~~~gtt~~~~~~~~~--------------~-----------~~~~~i~ 423 (549)
..+|+++|+.++|||||+++|.+... .......|.|.+.-...+. . ..+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 35899999999999999999976311 0011122444432211100 0 0146799
Q ss_pred EEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-CHhHHHHHHHHHHhC-CcEEEEEecccCCCC
Q 008909 424 LIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPN 501 (549)
Q Consensus 424 l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~l~~l~~~~-~p~ivv~NK~Dl~~~ 501 (549)
+|||||+.+| ...+...+..+|++++|+|++++. ..+..+.+..+...+ .|+++|+||+|+...
T Consensus 84 liDtPGh~~f--------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 84 FVDAPGHETL--------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEECCCHHHH--------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 9999999654 334566778999999999999876 667777777776665 468999999999753
Q ss_pred CchhhhHHHHHHHHHHHhcC--CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 502 KNQQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~--~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.... ....++.+.+... ...+++++||++|.|+++|+++|...
T Consensus 150 ~~~~---~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 150 EKAL---ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHH---HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 2211 1123334444322 24689999999999999999999864
No 373
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=3.1e-15 Score=139.83 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=101.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||+++|.+..... ...+..+.+.....+.+++. .+.+|||||...+..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------------- 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS--------------- 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh---------------
Confidence 479999999999999999999775321 11222222333334455553 568899999754221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc-cCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~-~~~~p~ivv~NK~D~~~~~ 319 (549)
.....+..+|++++|+|.+.+.+..... ++..+... ..+.|+++++||+|+.+..
T Consensus 65 -----------------------~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 65 -----------------------LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred -----------------------hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 2235677899999999987653322211 22223322 2357899999999987432
Q ss_pred HH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ....+ ...+++++++||++|.|+.+++..+.+.+..
T Consensus 122 ~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 122 VVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11 11112 2346689999999999999999988877654
No 374
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=4.5e-15 Score=136.37 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=99.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|++|+|||||++++++.... ....+....+.....+.+++ ..+.+|||||...+..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 66 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK-------------- 66 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH--------------
Confidence 468999999999999999999876421 11222222233334455555 5688999999754221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
......+..+|++++|+|.+.+.+..... +...+... ..+.|+++|+||+|+..
T Consensus 67 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 67 -----------------------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred -----------------------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 01224567899999999998754444332 23333332 14689999999999864
Q ss_pred hhHH---hHHHH-HHcCCCceEeeccC---CCChhhhHHHHHHHh
Q 008909 318 KGIM---QVSEF-WSLGFSPLPISAIS---GTGTGELLDLVCSEL 355 (549)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~v~vSA~~---g~gi~~L~~~i~~~l 355 (549)
.... ....+ ...+.+++++||++ +.++.+++..+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 3221 11112 23456899999999 778888887776544
No 375
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.63 E-value=4.8e-15 Score=136.59 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||++++++.... ..+.++........+.+++. .+.+|||||...+.....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------------ 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccccc------------
Confidence 37999999999999999999976532 22223332333334455554 367899999866433221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..+..+|++++|+|..++-+.... .+...+.....+.|+++|+||+|+.+..
T Consensus 67 --------------------------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~ 120 (174)
T cd04135 67 --------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDP 120 (174)
T ss_pred --------------------------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcCh
Confidence 335678999999998765443332 2344454444579999999999985432
Q ss_pred HH---------------hHHH-HHHcCC-CceEeeccCCCChhhhHHHHHHH
Q 008909 320 IM---------------QVSE-FWSLGF-SPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 320 ~~---------------~~~~-~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.. .... ....+. +++++||++|.|++++++.+...
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 121 KTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 10 0111 122343 57899999999999999887654
No 376
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.63 E-value=6.7e-15 Score=153.41 Aligned_cols=160 Identities=21% Similarity=0.216 Sum_probs=109.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCC--CeeecCCCCceeeeeEEEEec------------------c--C-----CCeEE
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTG------------------P--E-----GQKFR 423 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~--~~~~~~~~gtt~~~~~~~~~~------------------~--~-----~~~i~ 423 (549)
..+++++|+.++|||||+.+|.+.. ........|.|.+.....+.+ . + ..++.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 4689999999999999999997631 111111235665532111110 0 0 25799
Q ss_pred EEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-CHhHHHHHHHHHHhCC-cEEEEEecccCCCC
Q 008909 424 LIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEGK-GCLIVVNKWDTIPN 501 (549)
Q Consensus 424 l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~l~~l~~~~~-p~ivv~NK~Dl~~~ 501 (549)
+|||||+.+| ...++..+..+|++++|+|++++. ..+....+..+...+. |+++|+||+|+...
T Consensus 89 liDtPG~~~f--------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 89 FVDAPGHETL--------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred EEECCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc
Confidence 9999999654 334566778899999999999876 6777777777766664 68999999999754
Q ss_pred CchhhhHHHHHHHHHHHhcC--CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 502 KNQQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~--~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.... ...+++.+.+... .+.+++++||++|.|+++|+++|...
T Consensus 155 ~~~~---~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 155 ERAL---ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred hhHH---HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 2211 1123344444332 24689999999999999999999874
No 377
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.62 E-value=7.5e-15 Score=136.41 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.+|||||||++++....... ..| |.......+.+.+..+.+|||||...+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~~----------------- 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT--TIP--TIGFNVETVEYKNLKFTMWDVGGQDKLR----------------- 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--ccccceEEEEECCEEEEEEECCCCHhHH-----------------
Confidence 4689999999999999999997544322 112 3333344556677889999999985421
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcc--hHHHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
.....++..+|++|+|+|++.+.+.. ...+...+.. ...+.|+++|+||.|+.+..
T Consensus 76 ---------------------~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 134 (182)
T PTZ00133 76 ---------------------PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134 (182)
T ss_pred ---------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC
Confidence 23345678899999999987642221 1122222222 12368999999999986421
Q ss_pred H-HhHHHHHHc------CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 I-MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~-~~~~~~~~~------~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. ......... .+.++++||++|.|+.++++++.+.+.
T Consensus 135 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 135 STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 1 111122111 123568999999999999999987664
No 378
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.8e-15 Score=134.41 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=114.3
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
....+|+++|.+|||||.++.++....+ ........-.+.....+.++|.. +++|||+|.+.+.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~------------- 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR------------- 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH-------------
Confidence 3467899999999999999999986642 22222223345555667777754 6899999997643
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESP 316 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~ 316 (549)
..+..+++.|+.+++|+|.+..-+..+. .+++.+.+.. .+.+.++|+||+|+.
T Consensus 76 -------------------------ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 76 -------------------------TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred -------------------------HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 3566888999999999999875444432 2555666543 378999999999987
Q ss_pred hhhHHhHH----HHHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 317 RKGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 317 ~~~~~~~~----~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.++..... -....|+.++++||++|.+|.+.+-.+.+.+.+
T Consensus 131 ~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 131 EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 64433221 123468899999999999999998888777664
No 379
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.62 E-value=1.4e-14 Score=156.49 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=103.9
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee------------------CCceEEEEEcccc
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------GEHEFMLVDTGGV 221 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~liDTpG~ 221 (549)
..+.|.|+++||+|+|||||+|+|++.... .....+.|++........ .-..+.+|||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA-AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc-cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 346899999999999999999999977422 122223333322111111 1123789999999
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~ 301 (549)
..+.. ...+.+..+|++++|+|++.+...+..+.+..+...
T Consensus 82 e~f~~--------------------------------------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~- 122 (586)
T PRK04004 82 EAFTN--------------------------------------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRR- 122 (586)
T ss_pred HHHHH--------------------------------------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-
Confidence 75422 222456789999999999988878877777777654
Q ss_pred CCCeEEEEeccCCCChhhH------------------Hh--------HH-HHHH---------------cCCCceEeecc
Q 008909 302 MDKFIILAVNKCESPRKGI------------------MQ--------VS-EFWS---------------LGFSPLPISAI 339 (549)
Q Consensus 302 ~~~p~ivv~NK~D~~~~~~------------------~~--------~~-~~~~---------------~~~~~v~vSA~ 339 (549)
+.|+++++||+|+..... .. .. .+.. ...+++++||+
T Consensus 123 -~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~ 201 (586)
T PRK04004 123 -KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAK 201 (586)
T ss_pred -CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCC
Confidence 889999999999852100 00 00 0111 12468999999
Q ss_pred CCCChhhhHHHHHHHh
Q 008909 340 SGTGTGELLDLVCSEL 355 (549)
Q Consensus 340 ~g~gi~~L~~~i~~~l 355 (549)
+|.|+.+|+..+....
T Consensus 202 tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 202 TGEGIPDLLMVLAGLA 217 (586)
T ss_pred CCCChHHHHHHHHHHH
Confidence 9999999988875433
No 380
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.62 E-value=6.1e-15 Score=131.12 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=89.2
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|.+|||||||+|+|++.... .. .|. .+.+.+ .+|||||... ..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~--~~~---------------- 50 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV--ENR---------------- 50 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh--hhH----------------
Confidence 6999999999999999999987521 11 111 122322 6899999731 000
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH--Hh
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ 322 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~--~~ 322 (549)
.++ +.....+.++|++++|+|++.+.+.....+... . ..|+++|+||+|+.+... ..
T Consensus 51 ---------------~~~-~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~--~~p~ilv~NK~Dl~~~~~~~~~ 109 (142)
T TIGR02528 51 ---------------RLY-SALIVTAADADVIALVQSATDPESRFPPGFASI---F--VKPVIGLVTKIDLAEADVDIER 109 (142)
T ss_pred ---------------HHH-HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---c--cCCeEEEEEeeccCCcccCHHH
Confidence 001 122235789999999999988776655433322 1 359999999999865321 11
Q ss_pred HHHHH-HcCC-CceEeeccCCCChhhhHHHHH
Q 008909 323 VSEFW-SLGF-SPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 323 ~~~~~-~~~~-~~v~vSA~~g~gi~~L~~~i~ 352 (549)
...+. ..+. +++++||++|.|++++++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 110 AKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 12222 2344 689999999999999988763
No 381
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.62 E-value=8.8e-15 Score=132.44 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=101.2
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|+|||||++++++.. .......++.+.......+.+ ..+.+||+||.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------------- 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS----------------- 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-----------------
Confidence 58999999999999999999765 334445555555555555554 467899999975421
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~~~~ 319 (549)
......+..+|++++|+|...+.+.... .+...+.... .+.|+++|+||+|+....
T Consensus 62 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 62 ---------------------AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred ---------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 1223456789999999998764322221 2222333222 378999999999987522
Q ss_pred H---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 320 ~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
. .....+ ...+.+++++||+++.|+.++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 121 QVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred eecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 1 111122 2345689999999999999999988654
No 382
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.62 E-value=3.5e-15 Score=144.89 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=101.4
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||++++++.... ..+.+++.+.....+.+++ ..+.+|||+|...+...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~--------------- 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAM--------------- 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHH---------------
Confidence 6999999999999999999876432 2334444455555566666 45789999998653221
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH----------ccCCCeEEEEec
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK----------NYMDKFIILAVN 311 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~----------~~~~~p~ivv~N 311 (549)
...++..+|++|+|+|.....+.... .+...+.. ...+.|+++|+|
T Consensus 65 -----------------------~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 65 -----------------------RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred -----------------------HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 11345789999999998865433322 22333322 124689999999
Q ss_pred cCCCChhhH---HhHHHHHH--cCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 312 KCESPRKGI---MQVSEFWS--LGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 312 K~D~~~~~~---~~~~~~~~--~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
|+|+..... .+...+.. .+..++++||++|.|+++++..+....
T Consensus 122 K~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 122 KADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999864221 11222222 245789999999999999999998754
No 383
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=8.7e-15 Score=134.10 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=101.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..++|+++|.+|||||||++++++... .....+..+.+.....+.+.+. .+.+|||||...+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------------- 70 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------------- 70 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH--------------
Confidence 357899999999999999999986542 1122233333444555666663 47889999975422
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~ 317 (549)
......+..+|++++|+|.+.+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 71 ------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 71 ------------------------SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred ------------------------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 1223567889999999998764332211 2222233322 3688999999999864
Q ss_pred hhHH--h-HHHHH-HcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 318 KGIM--Q-VSEFW-SLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 318 ~~~~--~-~~~~~-~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.... . ...+. ....+++++||++|.|+.++++.+.+.
T Consensus 127 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 3211 1 11122 223578999999999999999988754
No 384
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.62 E-value=5.6e-15 Score=133.14 Aligned_cols=150 Identities=18% Similarity=0.168 Sum_probs=97.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee--CCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+|+|.+...... ..+..........+.. ....+.+|||||...+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------------- 63 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR---------------- 63 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH----------------
Confidence 4799999999999999999997763332 1222222222233333 33678899999985321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHcc-CCCeEEEEeccCCCC-hh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESP-RK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivv~NK~D~~-~~ 318 (549)
......+..+|++++|+|..++.+... ..+...+.... .+.|+++++||+|+. ..
T Consensus 64 ----------------------~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 64 ----------------------SITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred ----------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 123456778999999999876322221 12333333332 368999999999995 21
Q ss_pred h-H-HhHHHHH-HcCCCceEeeccCCCChhhhHHHHH
Q 008909 319 G-I-MQVSEFW-SLGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 319 ~-~-~~~~~~~-~~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
. . .....+. ..+.+++++||+++.|+.+++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 122 QVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 1 1 1112222 2467899999999999999998874
No 385
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=8.2e-15 Score=147.37 Aligned_cols=162 Identities=24% Similarity=0.330 Sum_probs=118.9
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhH-HHHHH-c-CCCceEeeccC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SEFWS-L-GFSPLPISAIS 340 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~-~~~~~-~-~~~~v~vSA~~ 340 (549)
++....+...|+++.|+|++.|.......+.+++. +++.++|+||+|+.+...... ..++. . +...+.+++..
T Consensus 26 ~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~ 101 (322)
T COG1161 26 RQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKS 101 (322)
T ss_pred HHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeec
Confidence 45667788899999999999999888888877776 456699999999998655332 22222 2 45678899999
Q ss_pred CCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC
Q 008909 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (549)
Q Consensus 341 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~ 420 (549)
+.+...+...+.....................+++++|.||+||||++|+|++.....++..||+|......... .
T Consensus 102 ~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~----~ 177 (322)
T COG1161 102 RQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD----D 177 (322)
T ss_pred ccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC----C
Confidence 988887775444332111000000111123457999999999999999999999999999999999998776654 3
Q ss_pred eEEEEeCCCccch
Q 008909 421 KFRLIDTAGIRKR 433 (549)
Q Consensus 421 ~i~l~DTpG~~~~ 433 (549)
.+.|+||||+.-.
T Consensus 178 ~i~LlDtPGii~~ 190 (322)
T COG1161 178 GIYLLDTPGIIPP 190 (322)
T ss_pred CeEEecCCCcCCC
Confidence 4899999999643
No 386
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.62 E-value=7.1e-15 Score=135.57 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=97.3
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++.+.... ..+..+........+.+++. .+.+|||||...+.....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------------ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP------------ 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc------------
Confidence 57999999999999999999976422 22222222222344555554 578999999865332211
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..+..+|++++|+|.....+.... .+...+.....+.|+++|+||+|+.+..
T Consensus 68 --------------------------~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 68 --------------------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred --------------------------cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 345778999999998764332222 2333344433578999999999986432
Q ss_pred HH---------------hHHHHH-HcC-CCceEeeccCCCChhhhHHHHHHH
Q 008909 320 IM---------------QVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 320 ~~---------------~~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.. ....+. ..+ .+++++||++|.|+++++..+.+.
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 10 001111 123 368999999999999999988653
No 387
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.62 E-value=8.7e-15 Score=158.96 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=112.8
Q ss_pred eEEEEcCCCCchhhHHHhhhCCC--ceeeecCCCccccceeeeeee-CCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGN--RAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~--~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.|+++|++|+|||||+++|+|.. ........|+|.+.....+.. ++..+.+|||||+.++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f----------------- 64 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF----------------- 64 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH-----------------
Confidence 68999999999999999999853 122334457887776555543 4677899999998642
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-EEEEeccCCCChhhH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGI 320 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ivv~NK~D~~~~~~ 320 (549)
.+.....+..+|++++|+|+..+...++.+++..+... +.| +++|+||+|+.++..
T Consensus 65 ---------------------i~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~ 121 (614)
T PRK10512 65 ---------------------LSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEAR 121 (614)
T ss_pred ---------------------HHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHH
Confidence 12344667889999999999998888888888777654 555 579999999975422
Q ss_pred Hh-----HHHHH-HcC---CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 321 MQ-----VSEFW-SLG---FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 321 ~~-----~~~~~-~~~---~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ...+. ..+ .+++++||++|.|+++|++.+......
T Consensus 122 ~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 11 11222 122 578999999999999999999876543
No 388
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.62 E-value=2.9e-15 Score=134.72 Aligned_cols=150 Identities=26% Similarity=0.265 Sum_probs=96.5
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
++|+++|++|+|||||+|+|.+.. ......++++.+.....+.+++ ..+.+|||||...+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------------- 66 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI-------------- 66 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH--------------
Confidence 589999999999999999999887 5666677888887776677777 67899999996542211
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-CCcch--HHHHHHHHHccC-CCeEEEEeccCCCCh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAAD--EEIADWLRKNYM-DKFIILAVNKCESPR 317 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~-~~~~~--~~~~~~l~~~~~-~~p~ivv~NK~D~~~ 317 (549)
.......++.++.++|.... ..... ......+..... +.|+++++||+|+..
T Consensus 67 ------------------------~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 67 ------------------------RRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred ------------------------HHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 01122334444444443322 11111 112222222222 789999999999976
Q ss_pred hhHHhHH--HHHH-cCCCceEeeccCCCChhhhHHHHH
Q 008909 318 KGIMQVS--EFWS-LGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 318 ~~~~~~~--~~~~-~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
....... .+.. ...+++++||++|.|+.++++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred chhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 4322111 1111 234789999999999999988763
No 389
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.3e-15 Score=131.54 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=111.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+|+|.+|||||-|+.++.+..+ ........-.+.....+.++|. .+.||||+|+++++.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt------------- 73 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT------------- 73 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh-------------
Confidence 367899999999999999999997752 2222223334555556677775 479999999977542
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~ 317 (549)
.+..+++.|+.||+|+|.+..-+.... .++..+.+ ...+.|.++|+||+|+.+
T Consensus 74 -------------------------it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 74 -------------------------ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred -------------------------hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 345788999999999999874333322 12233333 234679999999999987
Q ss_pred hhHHhHH---HH-HHcCCC-ceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 318 KGIMQVS---EF-WSLGFS-PLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 318 ~~~~~~~---~~-~~~~~~-~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
....... .+ ...+.+ ++++||+.+.++++.+..+...+....
T Consensus 129 ~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 129 KRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred heecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 6443321 22 234666 899999999999999888877776543
No 390
>PLN03110 Rab GTPase; Provisional
Probab=99.61 E-value=1.1e-14 Score=139.14 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+++|.+.... ....+....+.....+.+++ ..+.+|||||...+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~--------------- 75 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR--------------- 75 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 568999999999999999999976532 22223333333444555655 467899999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
......+..++++|+|+|.+.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 76 -----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 76 -----------------------AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred -----------------------HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 1233567789999999998765443322 233333332 236899999999998543
Q ss_pred hHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... .... ....+++++++||++|.|+.++++.+...+..
T Consensus 133 ~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 211 1111 12356789999999999999999999877754
No 391
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.7e-16 Score=132.70 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=109.1
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC--------C--CeEEEEeCCCccchhhhccCCCh
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--------G--QKFRLIDTAGIRKRAAIASSGST 442 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--------~--~~i~l~DTpG~~~~~~~~~~~~~ 442 (549)
+...+|.+|+||++++-++...+ +...-+....+|.....+.+.. + ..+++|||+|+++|.++++
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~-F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT---- 85 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGK-FNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT---- 85 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCc-ccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH----
Confidence 45678999999999998887543 4444455556666555554421 1 2588999999999876432
Q ss_pred hhhhHHHHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHH
Q 008909 443 TEALSVNRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREK 517 (549)
Q Consensus 443 ~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 517 (549)
..++.|-++++++|.++.-+.-. ..|+.+++-+ +.-+|+++||+|+...+.+. ..+..+.
T Consensus 86 ----------AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs-----~~qa~~L 150 (219)
T KOG0081|consen 86 ----------AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS-----EDQAAAL 150 (219)
T ss_pred ----------HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh-----HHHHHHH
Confidence 35789999999999987444333 3477777654 45688999999998755433 2334444
Q ss_pred HhcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 518 LRALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 518 l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
..++ +.|+|++||-+|.||++.++.+..+
T Consensus 151 a~ky-glPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 151 ADKY-GLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred HHHh-CCCeeeeccccCcCHHHHHHHHHHH
Confidence 4444 4699999999999999999887654
No 392
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=2.6e-15 Score=166.63 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=116.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe-----eec------------CCCCceeeeeEEEEeccCCCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~-----~~~------------~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
+.++|+++|++++|||||+++|+..... .+. ...|+|++.....+. +.+.+++++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCCcHH
Confidence 4569999999999999999999742111 011 245889988777775 4788999999999966
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
|. ..+.+.++.+|++++|+|+..+.+.++..++..+.+.++|+|+++||||+.... .....+
T Consensus 88 f~--------------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~----~~~~~~ 149 (693)
T PRK00007 88 FT--------------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD----FYRVVE 149 (693)
T ss_pred HH--------------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHH
Confidence 42 246678899999999999999999999999999999999999999999998643 223456
Q ss_pred HHHHHHhcCCCCCEEEEccccC
Q 008909 513 DVREKLRALDWAPIVYSTAIAG 534 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g 534 (549)
++++.+.......++|+||.++
T Consensus 150 ~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 150 QIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHhCCCeeeEEecCccCCc
Confidence 7777777766677899999876
No 393
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=1e-14 Score=134.30 Aligned_cols=150 Identities=19% Similarity=0.269 Sum_probs=98.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
+..+|+++|++|+|||||+++|.+.......+ |.......+.+.+..+.+|||||...+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~~~---------------- 72 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRAIR---------------- 72 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHHHH----------------
Confidence 36789999999999999999999875322222 3333344566778889999999974311
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcc--hHHHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++++|+|+....... ...+...+.. ...+.|+++++||+|+...
T Consensus 73 ----------------------~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 73 ----------------------PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred ----------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 12335567899999999987532111 1111122211 1236899999999998653
Q ss_pred hH-HhHHHHHHc------CCCceEeeccCCCChhhhHHHHHH
Q 008909 319 GI-MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 319 ~~-~~~~~~~~~------~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
.. ......... .++++++||++|.|++++++++.+
T Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 131 APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 21 112221111 124679999999999999998853
No 394
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.61 E-value=8.6e-15 Score=128.73 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=112.7
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...++|.|+|.+|||||||+|.+...++.. .....+..+.....+.++++. +++|||+|.++|..+.-
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~--------- 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV--------- 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc---------
Confidence 457899999999999999999998765322 222233345556666777754 68999999998765432
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHHccC----CCeEEEEecc
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYM----DKFIILAVNK 312 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~~----~~p~ivv~NK 312 (549)
..++.+|+.++|+|...+-+... ...-++|.+... .=|+||++||
T Consensus 77 -----------------------------aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 77 -----------------------------AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred -----------------------------ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 45678999999999876544443 334456665432 3489999999
Q ss_pred CCCChhh-----HHhHHHHHH--cCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 313 CESPRKG-----IMQVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 313 ~D~~~~~-----~~~~~~~~~--~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
+|+.... ....+.+.. .+++++++||+.+.++.+.+..+.......+
T Consensus 128 iD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 128 IDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 9986521 122334443 4679999999999999999988877665444
No 395
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=1.3e-14 Score=133.01 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=99.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||++++.+... ...+..++.......+.+++ ..+.+|||||..++....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR------------- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhh-------------
Confidence 4799999999999999999996652 22233333333333444555 467899999987643322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHH--ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRK--NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~--~~~~~p~ivv~NK~D~~~~ 318 (549)
...+..++.+++|+|...+.+..... +...+.. ...+.|+++++||+|+...
T Consensus 67 -------------------------~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 67 -------------------------ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred -------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 24456789999999987643332221 2222322 1247899999999998653
Q ss_pred hHH---hHHHH-HHcC-CCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIM---QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~---~~~~~-~~~~-~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... ....+ ...+ .+++++||++|.|+.++++.+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 211 11111 2234 5789999999999999999987654
No 396
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=8.9e-15 Score=158.60 Aligned_cols=151 Identities=28% Similarity=0.361 Sum_probs=108.1
Q ss_pred cCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchh
Q 008909 170 GRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLA 249 (549)
Q Consensus 170 G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~ 249 (549)
|.+|||||||+|+|+|.+ ..+++++|+|.+...+.+.+++.++.+|||||+.++...... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~--e---------------- 61 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE--E---------------- 61 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH--H----------------
Confidence 899999999999999986 578899999999998888888999999999999765432110 0
Q ss_pred hHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh--HHH-H
Q 008909 250 TREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--VSE-F 326 (549)
Q Consensus 250 ~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~--~~~-~ 326 (549)
.+.+.. .....+|++++|+|++.. . ........+.+. +.|+++|+||+|+.++.... ... .
T Consensus 62 -----------~v~~~~-l~~~~aDvvI~VvDat~l-e-r~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~d~~~L~ 125 (591)
T TIGR00437 62 -----------EVARDY-LLNEKPDLVVNVVDASNL-E-RNLYLTLQLLEL--GIPMILALNLVDEAEKKGIRIDEEKLE 125 (591)
T ss_pred -----------HHHHHH-HhhcCCCEEEEEecCCcc-h-hhHHHHHHHHhc--CCCEEEEEehhHHHHhCCChhhHHHHH
Confidence 011111 112468999999998762 1 222333333333 79999999999986533211 111 2
Q ss_pred HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 327 WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 327 ~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
...+.+++++||++|.|++++++.+.+..
T Consensus 126 ~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 126 ERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 23577899999999999999999887653
No 397
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.60 E-value=8.8e-15 Score=158.13 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=115.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCcee---------------eecCCCccccceeeeeeeCCceEEEEEcccccccCCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAI---------------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 228 (549)
..|+|+||.++|||||+++|+.....+ .....|+|.......+.+++..+.+|||||+.++.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~--- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG--- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---
Confidence 479999999999999999998532111 11234677777777788899999999999997632
Q ss_pred cchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEE
Q 008909 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (549)
Q Consensus 229 ~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~iv 308 (549)
..+.+++..+|.+++|+|+..+...+...++..+... +.|+++
T Consensus 79 -----------------------------------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~--~ip~IV 121 (594)
T TIGR01394 79 -----------------------------------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIV 121 (594)
T ss_pred -----------------------------------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC--CCCEEE
Confidence 2345778889999999999988777777777777665 789999
Q ss_pred EeccCCCChhhHH----hHHHHH--------HcCCCceEeeccCCC----------ChhhhHHHHHHHhhhh
Q 008909 309 AVNKCESPRKGIM----QVSEFW--------SLGFSPLPISAISGT----------GTGELLDLVCSELKKV 358 (549)
Q Consensus 309 v~NK~D~~~~~~~----~~~~~~--------~~~~~~v~vSA~~g~----------gi~~L~~~i~~~l~~~ 358 (549)
|+||+|+...... +...++ ...++++++||++|. |+..|++.+.+.++..
T Consensus 122 viNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 122 VINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999998643221 111222 124678999999996 7889999998887644
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=99.60 E-value=1.1e-14 Score=145.55 Aligned_cols=184 Identities=21% Similarity=0.234 Sum_probs=114.6
Q ss_pred hhhccEEEEEEeCCCCCCcch--HHHHHHHHHccCCCeEEEEeccCCCChh-hH-HhHHH-HHHcCCCceEeeccCCCCh
Q 008909 270 IEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK-GI-MQVSE-FWSLGFSPLPISAISGTGT 344 (549)
Q Consensus 270 i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivv~NK~D~~~~-~~-~~~~~-~~~~~~~~v~vSA~~g~gi 344 (549)
+.++|.+++|+|+..+..... ..++..+.. .+.|+++|+||+|+... .. ..... +...+++++++||+++.|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 688999999999976543222 122222333 37899999999999632 21 11222 2346788999999999999
Q ss_pred hhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCC-------ceeeeeEEEEecc
Q 008909 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTGP 417 (549)
Q Consensus 345 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~g-------tt~~~~~~~~~~~ 417 (549)
++|+..+. ...++++|.+|+|||||+|.+++.....+...++ ||+......+.
T Consensus 156 ~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-- 215 (298)
T PRK00098 156 DELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-- 215 (298)
T ss_pred HHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC--
Confidence 98887652 1367999999999999999999876655554442 66655443332
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHH
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~ 483 (549)
.+ ..|+||||+..+.... .....+...+..+...-.-+.+-|+++. .+-.+.+...+.
T Consensus 216 ~~--~~~~DtpG~~~~~~~~-----~~~~~~~~~f~~~~~~~~~c~f~~c~h~-~ep~c~v~~a~~ 273 (298)
T PRK00098 216 GG--GLLIDTPGFSSFGLHD-----LEAEELEHYFPEFRPLSGDCKFRNCTHL-HEPGCAVKAAVE 273 (298)
T ss_pred CC--cEEEECCCcCccCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCCcCC-CCCCChHHHHHH
Confidence 22 4899999998765421 1122344444444222222344566662 233444444433
No 399
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.60 E-value=9.3e-15 Score=158.39 Aligned_cols=156 Identities=25% Similarity=0.312 Sum_probs=108.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCce--------eee------cCCCccccceeeeeee---CC--ceEEEEEcccccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--------IVV------DEPGVTRDRMYGRSFW---GE--HEFMLVDTGGVLN 223 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~--------~~~------~~~~~t~~~~~~~~~~---~~--~~~~liDTpG~~~ 223 (549)
..+|+|+||+|+|||||+++|+..... ... ...|+|.......+.+ ++ ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 567999999999999999999864211 111 1235665554444444 23 5689999999976
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+. ....+++..+|++|+|+|++.+.+.++...+..+... +
T Consensus 83 F~--------------------------------------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--~ 122 (595)
T TIGR01393 83 FS--------------------------------------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--D 122 (595)
T ss_pred HH--------------------------------------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--C
Confidence 32 1334678889999999999988777766554444433 7
Q ss_pred CeEEEEeccCCCChhhHHhH-HHH-HHcCC---CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 304 KFIILAVNKCESPRKGIMQV-SEF-WSLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~-~~~-~~~~~---~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.|+++|+||+|+........ ... ...++ .++++||++|.|+.++++.+.+.++..
T Consensus 123 ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 123 LEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 89999999999864322111 111 11233 379999999999999999998887643
No 400
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.60 E-value=9.3e-15 Score=147.74 Aligned_cols=168 Identities=26% Similarity=0.300 Sum_probs=119.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHH--HHHHcCCCceEeecc
Q 008909 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS--EFWSLGFSPLPISAI 339 (549)
Q Consensus 262 i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~--~~~~~~~~~v~vSA~ 339 (549)
+.+++++.+..+|+||.+||+++|+-.....+..++......+..++++||+|+.+....... +|...+++++..||.
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~ 243 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSAL 243 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 458999999999999999999999888888888888876556778999999999987654432 344566788999987
Q ss_pred CC----------------CChhhhHH---------HHHHHh------hhhccchh--------hhhcccccceEEEeCCC
Q 008909 340 SG----------------TGTGELLD---------LVCSEL------KKVEGTED--------LVEEENRIPAIAIVGRP 380 (549)
Q Consensus 340 ~g----------------~gi~~L~~---------~i~~~l------~~~~~~~~--------~~~~~~~~~~v~~~G~~ 380 (549)
.. .++..... .+.+.. ........ ..........|+++|.|
T Consensus 244 ~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYP 323 (562)
T KOG1424|consen 244 AATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYP 323 (562)
T ss_pred cccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCC
Confidence 51 11111111 000000 00000000 00001113589999999
Q ss_pred CCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 381 NVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 381 ~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
||||||++|+|.|.+.+.|+..||-|.++.+..+. ..+.|||+||+.-+
T Consensus 324 NVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 324 NVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGLVFP 372 (562)
T ss_pred CCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCcccc
Confidence 99999999999999999999999999998876654 35799999999644
No 401
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.60 E-value=1.2e-14 Score=144.39 Aligned_cols=185 Identities=19% Similarity=0.213 Sum_probs=120.9
Q ss_pred hhhccEEEEEEeCCCCC-CcchHH-HHHHHHHccCCCeEEEEeccCCCChhhHH-h-HHHHHHcCCCceEeeccCCCChh
Q 008909 270 IEESCVIIFLVDGQAGL-TAADEE-IADWLRKNYMDKFIILAVNKCESPRKGIM-Q-VSEFWSLGFSPLPISAISGTGTG 345 (549)
Q Consensus 270 i~~~d~illVvD~~~~~-~~~~~~-~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~-~~~~~~~~~~~v~vSA~~g~gi~ 345 (549)
+.++|.+++|+|+..+. +....+ ++..+.. .++|+++|+||+|+.+.... . ...+...+++++++||+++.|++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 153 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLD 153 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHH
Confidence 67899999999998775 322211 2222232 37899999999999754221 1 12233467889999999999998
Q ss_pred hhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecC-------CCCceeeeeEEEEeccC
Q 008909 346 ELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP-------ISGTTRDAIDTEFTGPE 418 (549)
Q Consensus 346 ~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~-------~~gtt~~~~~~~~~~~~ 418 (549)
+|...+.. ..++++|.+|+|||||+|.+++.....+.. ..+||++.....+. .
T Consensus 154 ~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~ 213 (287)
T cd01854 154 ELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--G 213 (287)
T ss_pred HHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--C
Confidence 88776631 268999999999999999999865544332 22467665444432 1
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHH
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ 484 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~ 484 (549)
+ ..++||||+.++... ......+...+..+...-.-|-+-|++|. .+-.+.+...+.+
T Consensus 214 ~--~~liDtPG~~~~~~~-----~~~~~~~~~~f~~~~~~~~~C~F~~C~H~-~Ep~Cav~~av~~ 271 (287)
T cd01854 214 G--GLLIDTPGFREFGLL-----HIDPEELAHYFPEFRELAGQCKFRDCTHT-NEPGCAVKAAVEA 271 (287)
T ss_pred C--CEEEECCCCCccCCc-----cCCHHHHHHHhHHHHHHhCCCCCCCCcCC-CCCCCHHHHHHHc
Confidence 2 379999999887532 12233355555555444344666688873 3445666655544
No 402
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.60 E-value=1.1e-14 Score=133.71 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=97.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||++++++.... ....+..+.......+.+++. .+.+|||||...+..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------------- 69 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS-------------- 69 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH--------------
Confidence 568999999999999999999876422 112222222222334455554 568899999754321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-----cCCCeEEEEeccCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-----YMDKFIILAVNKCE 314 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-----~~~~p~ivv~NK~D 314 (549)
.....+..+|++++|+|...+.+.... .+...+... ..+.|+++|+||+|
T Consensus 70 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 70 ------------------------LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred ------------------------hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 223456789999999998765333222 122222221 13579999999999
Q ss_pred CChhhH--HhHHHHH-HcC-CCceEeeccCCCChhhhHHHHHHH
Q 008909 315 SPRKGI--MQVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 315 ~~~~~~--~~~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
+..... .....+. ..+ .+++++||++|.|+.+++..+.+.
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 126 IPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 864321 1122222 234 368999999999999999887653
No 403
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.2e-14 Score=147.62 Aligned_cols=160 Identities=22% Similarity=0.285 Sum_probs=121.8
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCC--------------ceeeecCCCccccceeeeeeeCC---ceEEEEEcccccc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGN--------------RAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLN 223 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDTpG~~~ 223 (549)
.+...++|+-|.+.|||||.++|+... ...+....|+|...+...+.+.+ +-+.+|||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 446778999999999999999987432 12344556889888888888877 7789999999998
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
|+.. ..+.+..|+.+|||||+.++...+....+-...+. +
T Consensus 138 Fs~E--------------------------------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--~ 177 (650)
T KOG0462|consen 138 FSGE--------------------------------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--G 177 (650)
T ss_pred ccce--------------------------------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--C
Confidence 7652 23778889999999999999888765544333333 8
Q ss_pred CeEEEEeccCCCChhhHHhHH----HHHHc-CCCceEeeccCCCChhhhHHHHHHHhhhhcc
Q 008909 304 KFIILAVNKCESPRKGIMQVS----EFWSL-GFSPLPISAISGTGTGELLDLVCSELKKVEG 360 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~~----~~~~~-~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~~ 360 (549)
..+|.|+||+|+...+..... ..+.. .-+++.+||++|.|+.++++.|.+.++....
T Consensus 178 L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 178 LAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred CeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 899999999999764432222 22222 2268999999999999999999999886554
No 404
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.59 E-value=7.8e-15 Score=140.56 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=99.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcc-ccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.+|+++|.+|||||||++++++.... ...+..+. .+.....+.+++ ..+.+|||||... ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~------------ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTE------------ 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHH------------
Confidence 37999999999999999999765432 11121111 133334445544 5688999999861 000
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhh-hccEEEEEEeCCCCCCcch-HHHHHHHHHc--cCCCeEEEEeccCCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIE-ESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESP 316 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~-~~d~illVvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivv~NK~D~~ 316 (549)
...+. .+|++++|+|++++.+... ..+...+... ..+.|+++|+||+|+.
T Consensus 66 --------------------------~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 66 --------------------------DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred --------------------------hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 02234 7999999999887543332 2233334332 2468999999999986
Q ss_pred hhhHHh---HHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 317 RKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 317 ~~~~~~---~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...... ...+ ...+.+++++||++|.|+.++++.+...+..
T Consensus 120 ~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 120 RSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 542211 1111 2346678999999999999999999887753
No 405
>PRK13796 GTPase YqeH; Provisional
Probab=99.59 E-value=1.8e-14 Score=147.65 Aligned_cols=145 Identities=28% Similarity=0.305 Sum_probs=102.3
Q ss_pred HHHHhhhcc-EEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH-----HhHHH--HHHcCC---Cce
Q 008909 266 ATAAIEESC-VIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSE--FWSLGF---SPL 334 (549)
Q Consensus 266 ~~~~i~~~d-~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~-----~~~~~--~~~~~~---~~v 334 (549)
.+..+...+ ++++|+|+.+........ +.+...++|+++|+||+|+.+... ..... ....++ .++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~----L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPG----LHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHH----HHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 345566555 999999987744333323 332223789999999999975321 11111 122354 578
Q ss_pred EeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcC-----CCeeecCCCCceeee
Q 008909 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDA 409 (549)
Q Consensus 335 ~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~-----~~~~~~~~~gtt~~~ 409 (549)
.+||+++.|+.++++.+.+... ...++++|.+|+|||||+|++++. +...++..||||++.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 9999999999999998865432 237899999999999999999853 245588999999998
Q ss_pred eEEEEeccCCCeEEEEeCCCccc
Q 008909 410 IDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 410 ~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
+...+. ++ ..++||||+..
T Consensus 204 ~~~~l~--~~--~~l~DTPGi~~ 222 (365)
T PRK13796 204 IEIPLD--DG--SFLYDTPGIIH 222 (365)
T ss_pred EEEEcC--CC--cEEEECCCccc
Confidence 765542 23 48999999954
No 406
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=1.4e-14 Score=137.85 Aligned_cols=157 Identities=21% Similarity=0.254 Sum_probs=101.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-CC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+|+++|.+|||||||+++|++...... ..+..+.+.....+.+ .+ ..+.+|||||...+..
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~------------- 67 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS------------- 67 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH-------------
Confidence 36899999999999999999997653222 1222223333334444 23 3578999999754221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~ 316 (549)
.....+..+|++++|+|.+++.+.... .+...+... ....|+++|+||+|+.
T Consensus 68 -------------------------~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 68 -------------------------ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred -------------------------HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 233567889999999998775333222 122222222 1246789999999986
Q ss_pred hhhHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 317 RKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 317 ~~~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
..... ....+ ...+.+++++||++|.|+.++++.+.+.+.+.
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 123 SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 53211 11111 23457899999999999999999998776543
No 407
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.59 E-value=1.4e-14 Score=132.69 Aligned_cols=146 Identities=24% Similarity=0.167 Sum_probs=96.4
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|.+|||||||+++|.+....... .|.......+.+.+..+.+|||||...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~g~~~~~~~~~~~~~~i~D~~G~~~~~------------------- 57 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA----PTVGFTPTKLRLDKYEVCIFDLGGGANFR------------------- 57 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc----CcccceEEEEEECCEEEEEEECCCcHHHH-------------------
Confidence 4789999999999999999976222222 23333344566778889999999975321
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCChhh-H
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKG-I 320 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~~~-~ 320 (549)
.....++..+|++++|+|++...+.... .++..+.. ...+.|+++|+||+|+.... .
T Consensus 58 -------------------~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 58 -------------------GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred -------------------HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 2334677899999999998875332221 12222222 12478999999999986543 1
Q ss_pred HhHHHH---HH----c--CCCceEeeccCC------CChhhhHHHHH
Q 008909 321 MQVSEF---WS----L--GFSPLPISAISG------TGTGELLDLVC 352 (549)
Q Consensus 321 ~~~~~~---~~----~--~~~~v~vSA~~g------~gi~~L~~~i~ 352 (549)
...... .. . .+.++++||++| .|+.+.++++.
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 111111 11 1 235778999998 88999998875
No 408
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.7e-14 Score=120.68 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=106.1
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC--CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
.+..++|.-|+|||+|+..+...+.+ .+.|.|.-...-..+.... ..++++|||+|+++|..+
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqerfrav------------- 76 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV------------- 76 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH-------------
Confidence 46788999999999999999876543 3344332211111111122 347899999999887543
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
+..+++++-.+++|+|++.+-+...+. |+...+.. +.-+++++||.|+...+.+. .+. ...++..++..
T Consensus 77 -trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~-----yee-ak~faeengl~ 149 (215)
T KOG0097|consen 77 -TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVT-----YEE-AKEFAEENGLM 149 (215)
T ss_pred -HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCc-----HHH-HHHHHhhcCeE
Confidence 334789999999999999877666655 44444443 45578889999998765543 222 33455567779
Q ss_pred EEEEccccCCCHHHHHHHHHh
Q 008909 526 IVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~ 546 (549)
++++|||+|.||++.|-..++
T Consensus 150 fle~saktg~nvedafle~ak 170 (215)
T KOG0097|consen 150 FLEASAKTGQNVEDAFLETAK 170 (215)
T ss_pred EEEecccccCcHHHHHHHHHH
Confidence 999999999999998865443
No 409
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.59 E-value=1.8e-14 Score=137.90 Aligned_cols=142 Identities=21% Similarity=0.227 Sum_probs=96.2
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCce------------------------------eeecCCCccccceeeeeeeCCceEE
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEHEFM 214 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 214 (549)
.|+++||+|+|||||+.+|+..... ......|+|.+.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999998632110 0112347788887888888999999
Q ss_pred EEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-------CC
Q 008909 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-------LT 287 (549)
Q Consensus 215 liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~-------~~ 287 (549)
+|||||+.++. ..+...+..+|++|+|+|+..+ ..
T Consensus 81 liDtpG~~~~~--------------------------------------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 81 ILDAPGHRDFV--------------------------------------PNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred EEECCChHHHH--------------------------------------HHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 99999985421 1333567789999999999874 33
Q ss_pred cchHHHHHHHHHccCCCeEEEEeccCCCCh-----hhHHhHHH-----HHHc-----CCCceEeeccCCCChh
Q 008909 288 AADEEIADWLRKNYMDKFIILAVNKCESPR-----KGIMQVSE-----FWSL-----GFSPLPISAISGTGTG 345 (549)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~-----~~~~~~~~-----~~~~-----~~~~v~vSA~~g~gi~ 345 (549)
.+.......+... ..+|+++++||+|+.. ........ +... ..+++++||++|.|+.
T Consensus 123 ~~~~~~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 123 GQTREHALLARTL-GVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cchHHHHHHHHHc-CCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3444444444332 2368899999999972 11111111 1122 2468999999999986
No 410
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.59 E-value=1.3e-14 Score=134.57 Aligned_cols=155 Identities=21% Similarity=0.137 Sum_probs=101.4
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||||++++++... .....+++.......+.+.+ ..+.+|||||..++..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------- 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI--------------- 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH---------------
Confidence 4799999999999999999997642 23233333333344455554 4568999999864321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
........++.+++|+|.....+.... .+...+.+. ..+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 65 -----------------------LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred -----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 122456678999999998764322221 122222221 136799999999998642
Q ss_pred hHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
... .... ....+.+++++||+++.|+.+++..+.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 122 RQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 211 1111 123456789999999999999999998877644
No 411
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.59 E-value=3.5e-14 Score=151.52 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=88.5
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-----e----------cC------CCCceeeeeEEEEeccCCCeEEEEeCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----V----------SP------ISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~----------~~------~~gtt~~~~~~~~~~~~~~~i~l~DTp 428 (549)
+..+++++|+.++|||||.++++...... + .+ ..|.+.......+. +++.++++||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-~~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-YRDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-ECCEEEEEEECC
Confidence 45689999999999999999997421110 0 00 11333333334444 467889999999
Q ss_pred CccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
|+.+|. ..+.++++.+|++|+|+|++++...+...++......++|+++++||+|+...
T Consensus 88 G~~df~--------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFS--------------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhH--------------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 997653 23566789999999999999998888888898888899999999999998653
No 412
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.59 E-value=1.1e-14 Score=132.94 Aligned_cols=146 Identities=18% Similarity=0.123 Sum_probs=93.9
Q ss_pred EEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccC
Q 008909 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (549)
Q Consensus 166 I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~G 245 (549)
|+++|.+|||||||++++.+.... ....| |.......+...+..+.+|||||...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~p--t~g~~~~~i~~~~~~l~i~Dt~G~~~~~~------------------- 59 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVVP--TTGFNSVAIPTQDAIMELLEIGGSQNLRK------------------- 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-ccccc--cCCcceEEEeeCCeEEEEEECCCCcchhH-------------------
Confidence 789999999999999999976421 11111 22222334455667899999999865321
Q ss_pred CchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhhHHhH-
Q 008909 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQV- 323 (549)
Q Consensus 246 i~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~- 323 (549)
....++..+|++++|+|++.+.+.... .++..+.....+.|+++|+||+|+........
T Consensus 60 -------------------~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i 120 (164)
T cd04162 60 -------------------YWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEI 120 (164)
T ss_pred -------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHH
Confidence 233568889999999998764322211 11222222225799999999999865332111
Q ss_pred ------HHH-HHcCCCceEeeccC------CCChhhhHHHHH
Q 008909 324 ------SEF-WSLGFSPLPISAIS------GTGTGELLDLVC 352 (549)
Q Consensus 324 ------~~~-~~~~~~~v~vSA~~------g~gi~~L~~~i~ 352 (549)
..+ ...++.++++||++ ++|+.++++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 121 HKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 111 12345678888887 899999887764
No 413
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=2.5e-14 Score=155.26 Aligned_cols=157 Identities=24% Similarity=0.287 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce--------ee------ecCCCccccceeeeeeeC-----CceEEEEEccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA--------IV------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVL 222 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~--------~~------~~~~~~t~~~~~~~~~~~-----~~~~~liDTpG~~ 222 (549)
...+|+|+||.++|||||+++|+..... .. ....|+|.......+.|. +..+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4668999999999999999999753211 11 112366666555445443 4678999999997
Q ss_pred ccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccC
Q 008909 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (549)
Q Consensus 223 ~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~ 302 (549)
++. ....+++..+|.+|+|+|++.+...++...+.++...
T Consensus 86 dF~--------------------------------------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~-- 125 (600)
T PRK05433 86 DFS--------------------------------------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-- 125 (600)
T ss_pred HHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--
Confidence 632 1234667889999999999988777766555544443
Q ss_pred CCeEEEEeccCCCChhhHHhHH-HHH-HcCC---CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 303 DKFIILAVNKCESPRKGIMQVS-EFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 303 ~~p~ivv~NK~D~~~~~~~~~~-~~~-~~~~---~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
+.|+++|+||+|+......... ... ..++ .++++||++|.|+.++++.+...++..
T Consensus 126 ~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 126 DLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 7899999999998643221111 111 1333 379999999999999999998887643
No 414
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.59 E-value=1.8e-14 Score=125.08 Aligned_cols=137 Identities=20% Similarity=0.299 Sum_probs=95.4
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
.+|+++|.+|+|||||+++|.+... ....|+... +.+ .+|||||-+- ..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~-----~~~---~~IDTPGEyi--E~~--------------- 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIE-----YYD---NTIDTPGEYI--ENP--------------- 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeE-----ecc---cEEECChhhe--eCH---------------
Confidence 4799999999999999999998752 222333332 222 3499999532 111
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCC--hhhHH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP--RKGIM 321 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~--~~~~~ 321 (549)
++.+.+.....+||+|++|.|++.+.......+...+ ++|+|=|+||+|+. +....
T Consensus 52 -----------------~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~ 109 (143)
T PF10662_consen 52 -----------------RFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIE 109 (143)
T ss_pred -----------------HHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHH
Confidence 1334556677899999999999887655555554433 68999999999998 44333
Q ss_pred hHHHHH-HcCC-CceEeeccCCCChhhhHHHHH
Q 008909 322 QVSEFW-SLGF-SPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 322 ~~~~~~-~~~~-~~v~vSA~~g~gi~~L~~~i~ 352 (549)
....++ .-|. .++++|+.+|+|+++|.+++.
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 333333 3344 579999999999999998874
No 415
>PLN03108 Rab family protein; Provisional
Probab=99.59 E-value=2.1e-14 Score=136.61 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=101.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+|+|.+|+|||||+++|++..... ...+....+.....+.+++. .+.+|||||...+..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------------- 70 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------------- 70 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------------
Confidence 4689999999999999999999765322 22222223333344556553 478999999754221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++|+|+|...+.+.... .+...+.. .....|+++|+||+|+...
T Consensus 71 ------------------------~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 71 ------------------------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred ------------------------HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 223556789999999998764333322 22222222 2246899999999998653
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ....+ ...+++++++||+++.|+.+++..+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 211 11122 235678999999999999999887776554
No 416
>CHL00071 tufA elongation factor Tu
Probab=99.58 E-value=1.6e-14 Score=150.95 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=102.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce---------------eeecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++||+|+|||||+++|++.... ......|+|.+.....+..++.++.++||||+.++
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~-- 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY-- 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH--
Confidence 3578999999999999999999865211 11223677777766566667788999999997531
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (549)
...+.+.+..+|++++|+|+..++..++.+++..+... +.|
T Consensus 89 ------------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~ 130 (409)
T CHL00071 89 ------------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPN 130 (409)
T ss_pred ------------------------------------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCE
Confidence 12345677889999999999998888888888877765 677
Q ss_pred EEEEeccCCCChhhH-H-----hHHHHH-HcC-----CCceEeeccCCCC
Q 008909 306 IILAVNKCESPRKGI-M-----QVSEFW-SLG-----FSPLPISAISGTG 343 (549)
Q Consensus 306 ~ivv~NK~D~~~~~~-~-----~~~~~~-~~~-----~~~v~vSA~~g~g 343 (549)
+++++||+|+.+... . +...++ ..+ .+++++||.+|.+
T Consensus 131 iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 131 IVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 678999999975322 1 111121 122 5789999998863
No 417
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.58 E-value=5.8e-14 Score=127.99 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=103.6
Q ss_pred EEEEcCCCCchhhHHHhhhCC-CceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 166 VAIVGRPNVGKSALFNRLVGG-NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 166 I~i~G~~~~GKSsl~n~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
|+++|.+|+|||||+|.|++. .....+..+++|..... ...+ ..+.+|||||+........ .
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~-~------------- 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKE-V------------- 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHH-H-------------
Confidence 789999999999999999943 33445566666655433 2232 3899999999854322100 0
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh--
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-- 322 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~-- 322 (549)
. ..+.. +..........++.+++|+|...+.......+.+++... +.|+++++||+|+.......
T Consensus 65 -------~---~~~~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~ 131 (170)
T cd01876 65 -------K---EKWGK-LIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAKA 131 (170)
T ss_pred -------H---HHHHH-HHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHHH
Confidence 0 00111 111222333567889999998877666666677777765 68999999999986432211
Q ss_pred ---HHHHH---HcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 323 ---VSEFW---SLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 323 ---~~~~~---~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
..... ....+++++||+++.|+.++++.+.+.
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 132 LKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 11111 223478899999999999999988754
No 418
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.58 E-value=3.7e-14 Score=135.60 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCcee------e--e-----cCCCcccc------------------------ceeeeee
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAI------V--V-----DEPGVTRD------------------------RMYGRSF 207 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~------~--~-----~~~~~t~~------------------------~~~~~~~ 207 (549)
+|+++|+.++|||||+++|....... . . ...|.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999998532100 0 0 00111110 0001233
Q ss_pred eCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhh--hccEEEEEEeCCCC
Q 008909 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAG 285 (549)
Q Consensus 208 ~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~--~~d~illVvD~~~~ 285 (549)
..++.+.++||||+..+. +.+...+. .+|++++|+|+..+
T Consensus 81 ~~~~~i~liDtpG~~~~~--------------------------------------~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL--------------------------------------KTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHHH--------------------------------------HHHHHhhcccCCCEEEEEEECCCC
Confidence 456789999999986421 12234443 68999999999999
Q ss_pred CCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hH----HHHHH---------------------------cCCCc
Q 008909 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QV----SEFWS---------------------------LGFSP 333 (549)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~----~~~~~---------------------------~~~~~ 333 (549)
+..++..++.++... +.|+++|+||+|+.+.... .. ..... ...++
T Consensus 123 ~~~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi 200 (224)
T cd04165 123 IIGMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPI 200 (224)
T ss_pred CcHHHHHHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcE
Confidence 998888898888876 7899999999998654321 11 11111 02278
Q ss_pred eEeeccCCCChhhhHHHHH
Q 008909 334 LPISAISGTGTGELLDLVC 352 (549)
Q Consensus 334 v~vSA~~g~gi~~L~~~i~ 352 (549)
+++||.+|.|+++|+..+.
T Consensus 201 ~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 201 FQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred EEeeCCCccCHHHHHHHHH
Confidence 8999999999999888774
No 419
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=9.9e-15 Score=137.15 Aligned_cols=148 Identities=18% Similarity=0.089 Sum_probs=99.4
Q ss_pred EcCCCCchhhHHHhhhCCCceeeecCCCccc--cceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 169 VGRPNVGKSALFNRLVGGNRAIVVDEPGVTR--DRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 169 ~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~--~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|.+|||||||+++++.... ...+. .|. ......+.+++ ..+.+|||+|...+...
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~~~~~-~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l----------------- 60 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYV-ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL----------------- 60 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--CCCCC-CceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh-----------------
Confidence 69999999999999986542 11121 222 22233344444 56899999998764332
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhhHH-h
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM-Q 322 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~ 322 (549)
...++..+|++|+|+|.+.+.+.... .+...+.+...+.|+++|+||+|+...... .
T Consensus 61 ---------------------~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~ 119 (200)
T smart00176 61 ---------------------RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAK 119 (200)
T ss_pred ---------------------hHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHH
Confidence 22567889999999999876444332 234445544457899999999998543211 1
Q ss_pred HHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 323 VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 323 ~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...+ ...++.++++||++|.|+.+++.++...+.+
T Consensus 120 ~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 120 SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1122 2356789999999999999999999876643
No 420
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.58 E-value=3e-14 Score=126.76 Aligned_cols=151 Identities=23% Similarity=0.214 Sum_probs=100.5
Q ss_pred EeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHH
Q 008909 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454 (549)
Q Consensus 376 ~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~ 454 (549)
++|.+|+|||||+|++++......... .+..+......... .+..+.+|||||+.... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYE-TTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR--------------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccc-cchhheeeEEEEECCEEEEEEEEecCChHHHH--------------hHHHHH
Confidence 479999999999999998654211222 22233333333221 25679999999985431 112446
Q ss_pred HhcCCcEEEEEEccccCCHhHHHHH-----HHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEE
Q 008909 455 IRRSDVVALVIEAMACITEQDCRIA-----ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (549)
Q Consensus 455 ~~~ad~~llVvD~~~~~~~~~~~~l-----~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 529 (549)
++.+|++++|+|++++........+ ......++|+++|+||+|+........ .............+++++
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 140 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSE-----EELAEQLAKELGVPYFET 140 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHH-----HHHHHHHHhhcCCcEEEE
Confidence 7899999999999986555544432 223345899999999999876543221 101223333456799999
Q ss_pred ccccCCCHHHHHHHHHh
Q 008909 530 TAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 530 SA~~g~~v~~L~~~l~~ 546 (549)
|++++.|+.+++++|.+
T Consensus 141 s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 141 SAKTGENVEELFEELAE 157 (157)
T ss_pred ecCCCCChHHHHHHHhC
Confidence 99999999999999863
No 421
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.58 E-value=5.4e-14 Score=138.94 Aligned_cols=114 Identities=25% Similarity=0.313 Sum_probs=85.0
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCee-----ecC------------CCCceeeeeEEEEeccCCCeEEEEeCCCccchhh
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTI-----VSP------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~-----~~~------------~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~ 435 (549)
+|+++|++|+|||||++++++..... +.. ..+.+.......+. +++.++++|||||+.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~f~- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYADFV- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHHHH-
Confidence 47899999999999999998643221 110 01233333333443 367789999999996542
Q ss_pred hccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
..+..+++.+|++++|+|++.+...+....++.+...++|+++|+||+|+...
T Consensus 79 -------------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 -------------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred -------------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 24556789999999999999988888888888888889999999999998753
No 422
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.58 E-value=2.5e-14 Score=150.17 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=114.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe------------------------------eecCCCCceeeeeEEEEeccCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPEG 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~------------------------------~~~~~~gtt~~~~~~~~~~~~~ 419 (549)
...+++++|+.++|||||+-+|+..... ...-.-|+|++.....+. +++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TTK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CCC
Confidence 3468999999999999999998742110 001122788887666665 467
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-C------HhHHHHHHHHHHhCCc-EEE
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-T------EQDCRIAERIEQEGKG-CLI 491 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-~------~~~~~~l~~l~~~~~p-~iv 491 (549)
..+.++||||+.+| ...+...++.+|++|+|+|+..+. . .+..+.+..+...++| +||
T Consensus 85 ~~i~liDtPGh~df--------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV 150 (447)
T PLN00043 85 YYCTVIDAPGHRDF--------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMIC 150 (447)
T ss_pred EEEEEEECCCHHHH--------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEE
Confidence 89999999999775 345666789999999999999862 1 5677778888888885 688
Q ss_pred EEecccCCCC-CchhhhHHHHHHHHHHHhcCC----CCCEEEEccccCCCHHH
Q 008909 492 VVNKWDTIPN-KNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDK 539 (549)
Q Consensus 492 v~NK~Dl~~~-~~~~~~~~~~~~~~~~l~~~~----~~~~i~iSA~~g~~v~~ 539 (549)
++||+|+... ......+++.+++...+++.+ ..+++|+||++|.|+.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 151 CCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 8999998621 112334455677778887665 35799999999999853
No 423
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.58 E-value=1.9e-14 Score=137.21 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=99.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|||||+|++++.+..+ ...+..+........+.+++. .+.+|||+|...+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l-------------- 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNV-------------- 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHH--------------
Confidence 4799999999999999999997642 222333322222334555554 5788999998653321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
...++..+|++|+|+|.+.+.+.... .+...+.....+.|+++|+||+|+....
T Consensus 66 ------------------------~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 66 ------------------------RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred ------------------------hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 12457889999999998876444332 2333344444678999999999985421
Q ss_pred -------------H--HhHHHHH-HcCC-CceEeeccCCCC-hhhhHHHHHHHh
Q 008909 320 -------------I--MQVSEFW-SLGF-SPLPISAISGTG-TGELLDLVCSEL 355 (549)
Q Consensus 320 -------------~--~~~~~~~-~~~~-~~v~vSA~~g~g-i~~L~~~i~~~l 355 (549)
. .+...+. ..+. +++++||+++.+ +.+++.......
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 0 0111111 2353 789999999884 999998876643
No 424
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.58 E-value=1.6e-14 Score=134.71 Aligned_cols=155 Identities=20% Similarity=0.198 Sum_probs=112.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+++++|.+|+|||++..++++.. + +..+.+|.-+.........+ ...+.|+||+|+.++...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~-f-~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~------------- 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR-F-VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAM------------- 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc-c-ccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHH-------------
Confidence 3589999999999999999999874 3 33345556566665655432 236789999997665321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
--.+++.+|++++||+++++.+.++.. ++..|.+ ...|+++|+||+|+...+.... ++ .+.++....+
T Consensus 68 -~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~-----ee-g~~la~~~~~ 140 (196)
T KOG0395|consen 68 -RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSE-----EE-GKALARSWGC 140 (196)
T ss_pred -HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCH-----HH-HHHHHHhcCC
Confidence 112679999999999999987777766 4445533 2579999999999987554432 22 2333445556
Q ss_pred CEEEEccccCCCHHHHHHHHHhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++++||+.+.||+++|..|.+.
T Consensus 141 ~f~E~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 141 AFIETSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred cEEEeeccCCcCHHHHHHHHHHH
Confidence 79999999999999999998764
No 425
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.58 E-value=2.8e-14 Score=131.62 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=104.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.+..+|+++|..|+||||+++++.......+.+..|.... .+.+ ++..+.+||.+|...+....
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~----~i~~-~~~~~~~~d~gG~~~~~~~w----------- 75 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE----EIKY-KGYSLTIWDLGGQESFRPLW----------- 75 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE----EEEE-TTEEEEEEEESSSGGGGGGG-----------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc----eeee-CcEEEEEEeccccccccccc-----------
Confidence 3456899999999999999999987654443333333222 2332 67789999999996543211
Q ss_pred HHHHHHHhcCCcEEEEEEccccCC-HhHHHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHH-HHHhcCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACIT-EQDCRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALD 522 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~l~~~~ 522 (549)
..+++.+|++|||+|+++.-. .+....+..+.. .++|++|++||+|+....... ++...+. ..+....
T Consensus 76 ---~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~---~i~~~l~l~~l~~~~ 149 (175)
T PF00025_consen 76 ---KSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEE---EIKEYLGLEKLKNKR 149 (175)
T ss_dssp ---GGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHH---HHHHHTTGGGTTSSS
T ss_pred ---eeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhh---HHHhhhhhhhcccCC
Confidence 125789999999999997432 223334444333 379999999999987643321 1121111 1122122
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
...++.|||++|.|+.+.++||.+.
T Consensus 150 ~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 150 PWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp CEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ceEEEeeeccCCcCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 426
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=3e-14 Score=158.34 Aligned_cols=146 Identities=19% Similarity=0.167 Sum_probs=113.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-----ecC------------CCCceeeeeEEEEeccCCCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----VSP------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~~~------------~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
..++|+++|++|+|||||+|+|++..... +.+ ..|+|++.....+. +++.++++|||||+.+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCCCcc
Confidence 45699999999999999999997532211 111 34788888777776 4788999999999976
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
|. ..+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+..... ....+
T Consensus 88 ~~--------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~----~~~~~ 149 (689)
T TIGR00484 88 FT--------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANF----LRVVN 149 (689)
T ss_pred hh--------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCH----HHHHH
Confidence 52 1355678999999999999999899999999999999999999999999986432 23456
Q ss_pred HHHHHHhcCCCCCEEEEccccC
Q 008909 513 DVREKLRALDWAPIVYSTAIAG 534 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g 534 (549)
++.+.+.......++|+||..+
T Consensus 150 ~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 150 QIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHhCCCceeEEeccccCCC
Confidence 6667766555455788888776
No 427
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.57 E-value=4.6e-14 Score=138.50 Aligned_cols=130 Identities=20% Similarity=0.296 Sum_probs=92.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecC--------CC-------------CceeeeeEEEEeccCCCeEEEEeCCCc
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSP--------IS-------------GTTRDAIDTEFTGPEGQKFRLIDTAGI 430 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~--------~~-------------gtt~~~~~~~~~~~~~~~i~l~DTpG~ 430 (549)
++|+++|++|+|||||.++++......... .. |.+.......+. +++.++++|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCCc
Confidence 589999999999999999998632221110 01 223223333444 46789999999999
Q ss_pred cchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHH
Q 008909 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYY 510 (549)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 510 (549)
.+|. ..+..+++.+|++++|+|++.+...+...+++.+...++|+++++||+|+....... .
T Consensus 82 ~df~--------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~----~ 143 (267)
T cd04169 82 EDFS--------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLE----L 143 (267)
T ss_pred hHHH--------------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHH----H
Confidence 7652 235567899999999999999888777788888888899999999999986643322 2
Q ss_pred HHHHHHHHhc
Q 008909 511 EQDVREKLRA 520 (549)
Q Consensus 511 ~~~~~~~l~~ 520 (549)
.+++++.+..
T Consensus 144 ~~~l~~~l~~ 153 (267)
T cd04169 144 LDEIEEELGI 153 (267)
T ss_pred HHHHHHHHCC
Confidence 3455555543
No 428
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.57 E-value=4.8e-14 Score=136.07 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=84.5
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceee-----------------ecCCCccccceeeeeeeCCceEEEEEcccccccCCC
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIV-----------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 227 (549)
.|+++|++|+|||||+++|+....... ....+.|.......+.+++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 489999999999999999975421110 1122344445556677888999999999996532
Q ss_pred CcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEE
Q 008909 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (549)
Q Consensus 228 ~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (549)
..+..++..+|.+++|+|+..+...+...+.+.+... +.|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~--~~P~i 120 (237)
T cd04168 79 ------------------------------------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL--NIPTI 120 (237)
T ss_pred ------------------------------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2344677889999999999988877666777777655 78999
Q ss_pred EEeccCCCCh
Q 008909 308 LAVNKCESPR 317 (549)
Q Consensus 308 vv~NK~D~~~ 317 (549)
+++||+|+..
T Consensus 121 ivvNK~D~~~ 130 (237)
T cd04168 121 IFVNKIDRAG 130 (237)
T ss_pred EEEECccccC
Confidence 9999999764
No 429
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.57 E-value=5.3e-14 Score=126.81 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=94.8
Q ss_pred EEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccC
Q 008909 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (549)
Q Consensus 166 I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~G 245 (549)
|+++|++|||||||+|+|.+.... ....+ |.......+..++..+.+|||||...+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------------------- 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPRFR-------------------- 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccC--CCCcceEEEEECCEEEEEEECCCCHhHH--------------------
Confidence 789999999999999999987532 22222 2223333445566789999999975421
Q ss_pred CchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHH-ccCCCeEEEEeccCCCChhhHH-
Q 008909 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGIM- 321 (549)
Q Consensus 246 i~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~~- 321 (549)
......+..+|++++|+|++....... ..+..++.. ...+.|+++|+||+|+......
T Consensus 59 ------------------~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 120 (159)
T cd04159 59 ------------------SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120 (159)
T ss_pred ------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH
Confidence 123356788999999999875322111 111222211 1246899999999998654321
Q ss_pred hHHHHHH------cCCCceEeeccCCCChhhhHHHHHH
Q 008909 322 QVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 322 ~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
....... ...+++++||++|.|+.++++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 1111111 2246799999999999999988754
No 430
>PRK10218 GTP-binding protein; Provisional
Probab=99.57 E-value=2.7e-14 Score=154.08 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=116.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceee---------------ecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+|+||.++|||||+++|+.....+. ....++|.......+.+++..+.+|||||+.++..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 367899999999999999999986322111 12346676666677788889999999999876321
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeE
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (549)
.+..++..+|.+|+|+|+..+...+...++..+... +.|+
T Consensus 84 --------------------------------------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--gip~ 123 (607)
T PRK10218 84 --------------------------------------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--GLKP 123 (607)
T ss_pred --------------------------------------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--CCCE
Confidence 344677889999999999988777777777666554 7899
Q ss_pred EEEeccCCCChhhHH----hHHHHH--------HcCCCceEeeccCCC----------ChhhhHHHHHHHhhhh
Q 008909 307 ILAVNKCESPRKGIM----QVSEFW--------SLGFSPLPISAISGT----------GTGELLDLVCSELKKV 358 (549)
Q Consensus 307 ivv~NK~D~~~~~~~----~~~~~~--------~~~~~~v~vSA~~g~----------gi~~L~~~i~~~l~~~ 358 (549)
++++||+|....... +....+ ...++++++||++|. |+..|++.+...++..
T Consensus 124 IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 124 IVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred EEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 999999998643221 112221 124678999999998 5788888888877643
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.57 E-value=9e-14 Score=132.84 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=102.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+++++|.+|+|||||+++++... +.....++...+.....+.. .+...+.+|||||+.++..+
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~------------- 74 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGE-FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL------------- 74 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh-------------
Confidence 4689999999999999998876543 32233333333333333321 23457899999998654221
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH--hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.+|++++|+|++++.+..... |+..+.. .+.|+++|+||+|+.... .. . + ...... ..+..+
T Consensus 75 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~~--~---~-~~~~~~-~~~~~~ 145 (215)
T PTZ00132 75 -RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQ-VK--A---R-QITFHR-KKNLQY 145 (215)
T ss_pred -hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc-CC--H---H-HHHHHH-HcCCEE
Confidence 123567899999999999866655543 4444443 368999999999985422 11 1 1 112222 234579
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|++++|.+|++.+
T Consensus 146 ~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 146 YDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 432
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.57 E-value=1.9e-14 Score=141.26 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=89.4
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCce-----------------eeecCCCccccceeeeeeeCCceEEEEEcccccccCCC
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRA-----------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~-----------------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 227 (549)
.|+|+||+|+|||||+++|+..... ......++|.+.....+.+.+.++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 4899999999999999999632110 111244777777778888999999999999986421
Q ss_pred CcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEE
Q 008909 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (549)
Q Consensus 228 ~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (549)
..+..++..+|++++|+|+..+...++..+++.+... ++|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~--~~p~i 120 (270)
T cd01886 79 ------------------------------------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY--NVPRI 120 (270)
T ss_pred ------------------------------------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2345778889999999999988888777777777665 78999
Q ss_pred EEeccCCCChh
Q 008909 308 LAVNKCESPRK 318 (549)
Q Consensus 308 vv~NK~D~~~~ 318 (549)
+++||+|+...
T Consensus 121 vviNK~D~~~a 131 (270)
T cd01886 121 AFVNKMDRTGA 131 (270)
T ss_pred EEEECCCCCCC
Confidence 99999998753
No 433
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.57 E-value=1.1e-13 Score=138.33 Aligned_cols=88 Identities=28% Similarity=0.272 Sum_probs=66.6
Q ss_pred EEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-----------------------cCCCeEEEEeCCCc
Q 008909 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-----------------------PEGQKFRLIDTAGI 430 (549)
Q Consensus 374 v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-----------------------~~~~~i~l~DTpG~ 430 (549)
++++|.+|+|||||+|++++.. +.+.++|++|++........ ..+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 4789999999999999999876 57888999998876654332 12357999999999
Q ss_pred cchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc
Q 008909 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (549)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~ 469 (549)
.... ........+.+..++.||++++|+|++.
T Consensus 80 v~ga-------~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGA-------HEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCc-------cchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5421 1112234567788999999999999973
No 434
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=3e-14 Score=134.29 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=122.6
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.....|.|+|.+|+|||||||+|++.....+...+-+|.........+++..+.+|||||+++.......
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~---------- 106 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE---------- 106 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH----------
Confidence 3456777999999999999999998776677766666666666666778889999999999875443321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh-
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG- 319 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~- 319 (549)
..+..+..+...|++++++|+.++.-..+..+++-+.....+.++++++|.+|...+.
T Consensus 107 ---------------------~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 107 ---------------------HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ---------------------HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 2344557778899999999999887777877777666655679999999999965331
Q ss_pred ------------HHh--------HHHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 ------------IMQ--------VSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ------------~~~--------~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
..+ ...++..-.|++.+++..++|++.|...+...++
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111 1122233347788888999999999988887765
No 435
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.56 E-value=4.7e-14 Score=127.84 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=96.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|||||||+.+++...... ..+. +.......+.++| ..+.+|||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~------------------ 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ--LESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA------------------ 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--CCCC-CccceEEEEEECCEEEEEEEEECCCCCch------------------
Confidence 69999999999999999988654221 1221 2222234566777 44789999998430
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCCh--
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR-- 317 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~~-- 317 (549)
.....+|++++|+|.++..+.+.. .+...+.... .+.|+++|+||+|+..
T Consensus 61 -------------------------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 61 -------------------------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred -------------------------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 234678999999999886555542 3344444322 4679999999999742
Q ss_pred hhHHh---HHHHH-Hc-CCCceEeeccCCCChhhhHHHHHH
Q 008909 318 KGIMQ---VSEFW-SL-GFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 318 ~~~~~---~~~~~-~~-~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
..... ...+. .. ++.++++||++|.|+++++..+.+
T Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 116 PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 11111 11222 22 468999999999999999988764
No 436
>PRK12739 elongation factor G; Reviewed
Probab=99.56 E-value=3.7e-14 Score=157.54 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=114.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe-----eec------------CCCCceeeeeEEEEeccCCCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~-----~~~------------~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
+.++|+++|+.++|||||+++|+..... .+. ...|+|++.....+. +++.+++++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHHH
Confidence 4678999999999999999999753111 111 245888888777776 4788999999999965
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
|. ..+.++++.+|++++|+|+..+...++..++..+...++|+|+++||+|+.... .....+
T Consensus 86 f~--------------~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~----~~~~~~ 147 (691)
T PRK12739 86 FT--------------IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD----FFRSVE 147 (691)
T ss_pred HH--------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHH
Confidence 42 246778899999999999999999999999999999999999999999998643 223456
Q ss_pred HHHHHHhcCCCCCEEEEccccC
Q 008909 513 DVREKLRALDWAPIVYSTAIAG 534 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g 534 (549)
++.+.+........+|+|+..+
T Consensus 148 ~i~~~l~~~~~~~~iPis~~~~ 169 (691)
T PRK12739 148 QIKDRLGANAVPIQLPIGAEDD 169 (691)
T ss_pred HHHHHhCCCceeEEeccccccc
Confidence 6777776544445778888655
No 437
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.56 E-value=4.5e-14 Score=132.63 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=95.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc------CCCeEEEEeCCCccchhhhccCCChhhhh
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP------EGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~------~~~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
+|+++|.+++|||||++++++.. +...+.+.+..+.....+.+. ....+.+|||+|+.++..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~-f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~----------- 69 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ-VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS----------- 69 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH-----------
Confidence 68999999999999999999865 333333433333322233322 123689999999966432
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----------------------hCCcEEEEEecccCCCCCc
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----------------------EGKGCLIVVNKWDTIPNKN 503 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----------------------~~~p~ivv~NK~Dl~~~~~ 503 (549)
+ ...+++++|++|+|+|++++.+.+... |+..+.. .+.|++||+||+|+...+.
T Consensus 70 -l--~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 70 -T--RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred -H--HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 1 223689999999999999987766664 6666654 2589999999999976432
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCEEEEccccCC
Q 008909 504 QQTATYYEQDVREKLRALDWAPIVYSTAIAGQ 535 (549)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~ 535 (549)
... .....-...+++..+++.+..+++++.
T Consensus 147 ~~~--~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 147 SSG--NLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred cch--HHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 221 111111234455556788888888653
No 438
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=3.3e-14 Score=137.50 Aligned_cols=172 Identities=22% Similarity=0.237 Sum_probs=118.2
Q ss_pred hhhccEEEEEEeCCCCCCcchHHHHHHHHH-ccCCCeEEEEeccCCCChhhHHh---H-HHHHHcCCCceEeeccCCCCh
Q 008909 270 IEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIMQ---V-SEFWSLGFSPLPISAISGTGT 344 (549)
Q Consensus 270 i~~~d~illVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~~~---~-~~~~~~~~~~v~vSA~~g~gi 344 (549)
+.+.|-+++|+.+-.|.... ..+-++|.. ...+...++++||+|+.+..... . ..+...|++++.+|++++.|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred ccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 45567777777765543222 223333322 22477778889999998654433 2 234458999999999999999
Q ss_pred hhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-------CceeeeeEEEEecc
Q 008909 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFTGP 417 (549)
Q Consensus 345 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~-------gtt~~~~~~~~~~~ 417 (549)
.+|...+.. ...+++|.+|+|||||+|+|.+.....+.+.. .||+......+. .
T Consensus 156 ~~l~~~l~~------------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~ 216 (301)
T COG1162 156 EELAELLAG------------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-G 216 (301)
T ss_pred HHHHHHhcC------------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-C
Confidence 888777632 25689999999999999999986555544333 577766554442 1
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~ 469 (549)
+| .|+||||+..+..+ +.....+..++..++..-.-|-.-|++|
T Consensus 217 gG---~iiDTPGf~~~~l~-----~~~~e~l~~~F~ef~~~~~~CkFr~C~H 260 (301)
T COG1162 217 GG---WIIDTPGFRSLGLA-----HLEPEDLVQAFPEFAELARQCKFRDCTH 260 (301)
T ss_pred CC---EEEeCCCCCccCcc-----cCCHHHHHHHhHHHHHHhcCCCCCCCCC
Confidence 23 79999999988652 3456667778888877666676777776
No 439
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5.7e-14 Score=139.45 Aligned_cols=153 Identities=21% Similarity=0.315 Sum_probs=116.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCe---------------------e---------ecCCCCceeeeeEEEEeccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRT---------------------I---------VSPISGTTRDAIDTEFTGPEGQ 420 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~---------------------~---------~~~~~gtt~~~~~~~~~~~~~~ 420 (549)
..+++++|+..+||||++-+|+..... . ..-.-|.|++.....+.. +..
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k~ 85 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DKY 85 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CCc
Confidence 458999999999999999999853211 0 111238999998888875 566
Q ss_pred eEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-------CCHhHHHHHHHHHHhCC-cEEEE
Q 008909 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGK-GCLIV 492 (549)
Q Consensus 421 ~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-------~~~~~~~~l~~l~~~~~-p~ivv 492 (549)
.+.|+|+||+++| +..+.-.+.+||+++||||+..+ ...|..+.+-.++-.++ .+||+
T Consensus 86 ~~tIiDaPGHrdF--------------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 86 NFTIIDAPGHRDF--------------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred eEEEeeCCchHHH--------------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 8999999999876 44566678899999999999987 56677777666666665 58889
Q ss_pred EecccCCCCCchhhhHHHHHHHHHHHhcCCC----CCEEEEccccCCCHHH
Q 008909 493 VNKWDTIPNKNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVDK 539 (549)
Q Consensus 493 ~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~----~~~i~iSA~~g~~v~~ 539 (549)
+||||+.+ ......+++...+..+++..++ .+|+||||.+|.|+.+
T Consensus 152 vNKMD~v~-wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 152 VNKMDLVS-WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEcccccc-cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 99999987 4445556666666666655554 4699999999999865
No 440
>PRK12736 elongation factor Tu; Reviewed
Probab=99.56 E-value=4.6e-14 Score=146.68 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCc------e---------eeecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++||+++|||||+++|++... . ......|+|.+.....+..++..+.++||||+.++
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH--
Confidence 357899999999999999999986310 0 01124577777755555556788999999998542
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (549)
.....+.+..+|++++|+|+..+...++.+++.++... +.|
T Consensus 89 ------------------------------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~ 130 (394)
T PRK12736 89 ------------------------------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPY 130 (394)
T ss_pred ------------------------------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCE
Confidence 12334667789999999999988888888888877765 677
Q ss_pred EEEEeccCCCChhh-HHh-----HHHHH-HcC-----CCceEeeccCCC--------ChhhhHHHHHHHhh
Q 008909 306 IILAVNKCESPRKG-IMQ-----VSEFW-SLG-----FSPLPISAISGT--------GTGELLDLVCSELK 356 (549)
Q Consensus 306 ~ivv~NK~D~~~~~-~~~-----~~~~~-~~~-----~~~v~vSA~~g~--------gi~~L~~~i~~~l~ 356 (549)
+++++||+|+.... ... ...++ ..+ .+++++||++|. ++..|++.+...++
T Consensus 131 ~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 131 LVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 67889999987422 111 11111 122 478999999983 56777777776654
No 441
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=2e-14 Score=143.68 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=122.5
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe--------------eecCCCCceeeeeEEEEeccC--C--CeEEEEeCCCcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT--------------IVSPISGTTRDAIDTEFTGPE--G--QKFRLIDTAGIR 431 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~--------------~~~~~~gtt~~~~~~~~~~~~--~--~~i~l~DTpG~~ 431 (549)
..+++.++.+...|||||..+++..... ...-.-|+|+....+.+.+.. | ..++++|||||.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 3568899999999999999999853221 122344888887777666542 2 368899999999
Q ss_pred chhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHH
Q 008909 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (549)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 511 (549)
+|... ..+++..|.++++|||+++++..|...-.-...+.+.-+|-|+||+||..+.... +.
T Consensus 88 DFsYE--------------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adper----vk 149 (603)
T COG0481 88 DFSYE--------------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPER----VK 149 (603)
T ss_pred ceEEE--------------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHH----HH
Confidence 98542 3356788999999999999999999988888889999999999999998765433 34
Q ss_pred HHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 512 QDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 512 ~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++.+.+. +.-...+.+|||+|.||+++++.|.+.
T Consensus 150 ~eIe~~iG-id~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 150 QEIEDIIG-IDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHHHHhC-CCcchheeEecccCCCHHHHHHHHHhh
Confidence 44545444 333468999999999999999998764
No 442
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.55 E-value=6.7e-14 Score=146.43 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=111.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCee--ecCCCCceeeeeEEEE---------------eccC---------------
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEF---------------TGPE--------------- 418 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~--~~~~~gtt~~~~~~~~---------------~~~~--------------- 418 (549)
..+|+++|+...|||||+.+|++..... ..-..|.|++.-...+ .+..
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 4589999999999999999999753322 1122244433211111 0111
Q ss_pred --CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-CCHhHHHHHHHHHHhCC-cEEEEEe
Q 008909 419 --GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-ITEQDCRIAERIEQEGK-GCLIVVN 494 (549)
Q Consensus 419 --~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-~~~~~~~~l~~l~~~~~-p~ivv~N 494 (549)
..++.++||||+.+| +..+...+..+|++++|+|+.++ ...+..+.+..+...++ ++|+|+|
T Consensus 114 ~~~~~i~~IDtPGH~~f--------------i~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDIL--------------MATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccceEeeeeCCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 247899999999554 45667788999999999999986 56777777776766666 5888999
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHhc--CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 495 KWDTIPNKNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
|+|+..... .++..+++.+.++. ..+.+++++||++|.|++.|++.|.+.
T Consensus 180 KiDlv~~~~---~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 180 KIDLVKEAQ---AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred cccccCHHH---HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 999975322 12233445555443 245689999999999999999999853
No 443
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.55 E-value=1.3e-13 Score=129.74 Aligned_cols=164 Identities=21% Similarity=0.278 Sum_probs=107.6
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeec-CCCC---ceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS-PISG---TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~-~~~g---tt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
.+|+++|.+|+||||++|++++....... ...+ +|+... .+.......+.+|||||+.+... ..+.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~------~~~~~- 72 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF------PPDDY- 72 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccC------CHHHH-
Confidence 46899999999999999999985422111 1112 222211 12212245789999999965321 11222
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCc----------hhhhHHHHHHHHHH
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKN----------QQTATYYEQDVREK 517 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~~~~ 517 (549)
+.. ..+..+|++++|.+ .+++..+..+++.+...+.|+++|+||+|+..... ....+.+.+.+.+.
T Consensus 73 l~~--~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 73 LEE--MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred HHH--hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 111 12568898888754 45888999999999999999999999999853211 12233344445555
Q ss_pred Hhc--CCCCCEEEEccc--cCCCHHHHHHHHHhhh
Q 008909 518 LRA--LDWAPIVYSTAI--AGQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~--~~~~~~i~iSA~--~g~~v~~L~~~l~~~~ 548 (549)
++. ....+++.+|+. .++|+..|.+.+...|
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 553 234679999998 6799999999887654
No 444
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.55 E-value=2e-13 Score=117.86 Aligned_cols=154 Identities=21% Similarity=0.366 Sum_probs=108.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|.++|..|+||||+++++++...-.+++..|.-+. ... .++.++++||..|+... +.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik----tl~-~~~~~L~iwDvGGq~~l---------------r~ 75 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK----TLE-YKGYTLNIWDVGGQKTL---------------RS 75 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE----EEE-ecceEEEEEEcCCcchh---------------HH
Confidence 56899999999999999999999764444444443333 233 36789999999999542 33
Q ss_pred HHH-HHhcCCcEEEEEEccccCCHhHHH-HHHHHH-H---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 451 AFR-AIRRSDVVALVIEAMACITEQDCR-IAERIE-Q---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 451 ~~~-~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~-~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
+++ |+..+|++|+|+|++++...++.. .+..+. + .+.|++|++||.|+.+.-...... ..-.+.+.++...+
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~-~~~~L~~l~ks~~~- 153 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEIS-KALDLEELAKSHHW- 153 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHH-HhhCHHHhccccCc-
Confidence 333 679999999999999876555443 333322 2 378999999999997543222111 12335555566555
Q ss_pred CEEEEccccCCCHHHHHHHHHh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
+++-|||.+|.++.+-|+|+..
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred eEEEEeccccccHHHHHHHHHH
Confidence 8999999999999888888864
No 445
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=2e-13 Score=121.07 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=119.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeec------CCCC---ceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS------PISG---TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGS 441 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~------~~~g---tt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~ 441 (549)
..+|++.|..++||+|++.++.......+. ..-+ ||.-.-.....+.++..+.|+|||||.+|.-+.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~---- 85 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW---- 85 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH----
Confidence 468999999999999999999876533221 1112 444444455555566899999999998875321
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhC-CcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc
Q 008909 442 TTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (549)
Q Consensus 442 ~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~ 520 (549)
--..+++..+++++|++.+.+.....++..+...+ +|++|++||.|+...... +++++.+..
T Consensus 86 ----------~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp-------e~i~e~l~~ 148 (187)
T COG2229 86 ----------EILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP-------EKIREALKL 148 (187)
T ss_pred ----------HHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH-------HHHHHHHHh
Confidence 11468999999999999998887888888888877 999999999999876553 445566665
Q ss_pred C-CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 521 L-DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 521 ~-~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
. ...++|+++|..+++..+.++.+...
T Consensus 149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 149 ELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ccCCCceeeeecccchhHHHHHHHHHhh
Confidence 5 36799999999999999988877543
No 446
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.54 E-value=9.8e-14 Score=129.57 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=98.3
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+++|...... .....+........+.+++. .+.+|||+|...+.....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~------------ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP------------ 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccch------------
Confidence 37999999999999999999854322 11112222222334455553 468999999865332111
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..+..++++++++|.....+.... .+...+.....+.|+++|+||+|+....
T Consensus 68 --------------------------~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (187)
T cd04129 68 --------------------------LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDA 121 (187)
T ss_pred --------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCc
Confidence 235678999999998764433322 2444454444579999999999985311
Q ss_pred ----------HH---hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 ----------IM---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ----------~~---~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. ....+ ...+. +++++||++|.|++++++.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 122 VAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred ccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 00 11111 22343 6899999999999999999986654
No 447
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.54 E-value=6.5e-14 Score=146.17 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCce--eeecCCCccccceeeee--------------------e------eCCceEE
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRS--------------------F------WGEHEFM 214 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~--------------------~------~~~~~~~ 214 (549)
..+|+++|++|+|||||+++|.+.... ......+.|........ . ..+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 468999999999999999999864210 01111233322221110 0 0146789
Q ss_pred EEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC-CcchHHH
Q 008909 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEI 293 (549)
Q Consensus 215 liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~-~~~~~~~ 293 (549)
+|||||+.++. ..+...+..+|++++|+|++.+. ..+..++
T Consensus 84 liDtPGh~~f~--------------------------------------~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~ 125 (406)
T TIGR03680 84 FVDAPGHETLM--------------------------------------ATMLSGAALMDGALLVIAANEPCPQPQTKEH 125 (406)
T ss_pred EEECCCHHHHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCccccchHHH
Confidence 99999986521 23446677899999999999876 5666666
Q ss_pred HHHHHHccCCCeEEEEeccCCCChhhHH-----hHHHHHH----cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 294 ADWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 294 ~~~l~~~~~~~p~ivv~NK~D~~~~~~~-----~~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+..+... ..+++++++||+|+.+.... ....+.. .+++++++||++|.|+++|++.+...++
T Consensus 126 l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 126 LMALEII-GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHc-CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 6655433 23578999999999754221 1111211 1457899999999999999999987664
No 448
>PLN03127 Elongation factor Tu; Provisional
Probab=99.54 E-value=1.4e-13 Score=144.29 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=108.3
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCC------Ccee---------eecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGG------NRAI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++||+|+|||||+++|++. .... .....|+|.+.....+..++.++.++||||+.++
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f-- 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY-- 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch--
Confidence 3578999999999999999999732 1111 1223688888877777777789999999998531
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (549)
...+...+..+|++++|+|+..+...++.+++.++... +.|
T Consensus 138 ------------------------------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~ 179 (447)
T PLN03127 138 ------------------------------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPS 179 (447)
T ss_pred ------------------------------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCe
Confidence 12333556679999999999988888888888888765 778
Q ss_pred EEEEeccCCCChhhH-HhH-----HHHHH-c-----CCCceEeecc---CCCC-------hhhhHHHHHHHhh
Q 008909 306 IILAVNKCESPRKGI-MQV-----SEFWS-L-----GFSPLPISAI---SGTG-------TGELLDLVCSELK 356 (549)
Q Consensus 306 ~ivv~NK~D~~~~~~-~~~-----~~~~~-~-----~~~~v~vSA~---~g~g-------i~~L~~~i~~~l~ 356 (549)
+++++||+|+.+... ... ..+.. . ..+++++||. +|.| +..|++.+...++
T Consensus 180 iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 180 LVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 578899999974221 111 11111 1 2467888876 4444 5677777766654
No 449
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.54 E-value=4.7e-14 Score=137.66 Aligned_cols=163 Identities=23% Similarity=0.324 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh-HHHHHHcCCCce--E
Q 008909 259 PSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFWSLGFSPL--P 335 (549)
Q Consensus 259 ~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~-~~~~~~~~~~~v--~ 335 (549)
++.|...+...+..+|++|.|+|+++|+......+..+|++....+.+|+|+||||+++..... ....+...+|.+ .
T Consensus 200 SkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfH 279 (572)
T KOG2423|consen 200 SKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFH 279 (572)
T ss_pred hhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeee
Confidence 3455666777888899999999999999888888889999877788899999999999864432 334444555543 3
Q ss_pred eeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEe
Q 008909 336 ISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT 415 (549)
Q Consensus 336 vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~ 415 (549)
.|-.+..|-..|++++.+.-+-.. ......|+++|.||+||||++|+|...+++.+.++||-|.-+....+.
T Consensus 280 Asi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm 351 (572)
T KOG2423|consen 280 ASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM 351 (572)
T ss_pred hhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH
Confidence 455566777778877765543221 123467999999999999999999999999999999988766544332
Q ss_pred ccCCCeEEEEeCCCccch
Q 008909 416 GPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 416 ~~~~~~i~l~DTpG~~~~ 433 (549)
.+|.|+|+||+.-.
T Consensus 352 ----krIfLIDcPGvVyp 365 (572)
T KOG2423|consen 352 ----KRIFLIDCPGVVYP 365 (572)
T ss_pred ----hceeEecCCCccCC
Confidence 57899999999654
No 450
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.53 E-value=1e-13 Score=138.63 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=108.2
Q ss_pred EEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee------------------------CCceEEEEEcccc
Q 008909 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------------GEHEFMLVDTGGV 221 (549)
Q Consensus 166 I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~liDTpG~ 221 (549)
|+|+|.||||||||+|+|++.. ..++++|++|.++..+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999876 57889999998888776553 2246899999999
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC------------C-c
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------------T-A 288 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~------------~-~ 288 (549)
....... .-+..+++..++.||++++|+|+.... . .
T Consensus 80 v~ga~~~-------------------------------~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~ 128 (318)
T cd01899 80 VPGAHEG-------------------------------KGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPL 128 (318)
T ss_pred CCCccch-------------------------------hhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHH
Confidence 6422111 013456677889999999999986310 0 0
Q ss_pred chHHH-----HH--------------------------------------------HHHH--------------------
Q 008909 289 ADEEI-----AD--------------------------------------------WLRK-------------------- 299 (549)
Q Consensus 289 ~~~~~-----~~--------------------------------------------~l~~-------------------- 299 (549)
.+.++ .. .|..
T Consensus 129 ~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~ 208 (318)
T cd01899 129 EDIEFLENEIDMWIYGILEKNWEKIVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLAR 208 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHH
Confidence 11110 00 0000
Q ss_pred --ccCCCeEEEEeccCCCChhhHH-hHHHHHHcCCCceEeeccCCCChhhhHH-HHHHHhhhh
Q 008909 300 --NYMDKFIILAVNKCESPRKGIM-QVSEFWSLGFSPLPISAISGTGTGELLD-LVCSELKKV 358 (549)
Q Consensus 300 --~~~~~p~ivv~NK~D~~~~~~~-~~~~~~~~~~~~v~vSA~~g~gi~~L~~-~i~~~l~~~ 358 (549)
....+|+++|+||+|+...... ...........++++||+.+.++.+|.+ .+.++++..
T Consensus 209 ~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 209 ALRKRSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred HHHhcCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 0124699999999997643221 1111111234689999999999999997 588888653
No 451
>PRK12735 elongation factor Tu; Reviewed
Probab=99.53 E-value=5.8e-14 Score=146.01 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCC------Cce---------eeecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGG------NRA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++||+|+|||||+++|++. ... ......|+|.+.....+..++.++.++||||+.++
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY-- 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH--
Confidence 3568999999999999999999862 100 11124577777655555567788999999998531
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeE
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (549)
...+...+..+|++++|+|+..+...+..+++..+... +.|.
T Consensus 89 ------------------------------------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~--gi~~ 130 (396)
T PRK12735 89 ------------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPY 130 (396)
T ss_pred ------------------------------------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCe
Confidence 12344667889999999999988777777777766654 6775
Q ss_pred E-EEeccCCCChhh-HH-----hHHHHH-Hc-----CCCceEeeccCCC----------ChhhhHHHHHHHhh
Q 008909 307 I-LAVNKCESPRKG-IM-----QVSEFW-SL-----GFSPLPISAISGT----------GTGELLDLVCSELK 356 (549)
Q Consensus 307 i-vv~NK~D~~~~~-~~-----~~~~~~-~~-----~~~~v~vSA~~g~----------gi~~L~~~i~~~l~ 356 (549)
+ +++||+|+.... .. +...+. .. .++++++||++|. ++..|++.+...++
T Consensus 131 iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 131 IVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 5 579999997422 11 111122 12 2578999999984 56777777776554
No 452
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=7.8e-14 Score=130.75 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=94.7
Q ss_pred CeEEEEcCCCCchhhHHH-hhhCCCce---eeecCCCccc--ccee-e-------eeeeCC--ceEEEEEcccccccCCC
Q 008909 164 PRVAIVGRPNVGKSALFN-RLVGGNRA---IVVDEPGVTR--DRMY-G-------RSFWGE--HEFMLVDTGGVLNVSKS 227 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n-~l~~~~~~---~~~~~~~~t~--~~~~-~-------~~~~~~--~~~~liDTpG~~~~~~~ 227 (549)
.+|+++|.+|||||||+. ++.+.... ....+..+.. +... . .+.++| ..+.+|||+|.... .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 589999999999999996 55543211 1111222110 1111 0 113344 45789999998531 1
Q ss_pred CcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCe
Q 008909 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKF 305 (549)
Q Consensus 228 ~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p 305 (549)
. ..++..+|++|+|+|.+.+.+.... .+...+.....+.|
T Consensus 81 ~--------------------------------------~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p 122 (195)
T cd01873 81 R--------------------------------------RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP 122 (195)
T ss_pred h--------------------------------------cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC
Confidence 1 1246789999999999876555443 24455554445789
Q ss_pred EEEEeccCCCChh-------------------hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHH
Q 008909 306 IILAVNKCESPRK-------------------GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 306 ~ivv~NK~D~~~~-------------------~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
+++|+||+|+... ... +...+ ...+.+++++||++|.|+.+++..+.+
T Consensus 123 iilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 123 VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred EEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 9999999998531 111 11111 235678999999999999999987764
No 453
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.53 E-value=8.6e-14 Score=145.15 Aligned_cols=144 Identities=24% Similarity=0.320 Sum_probs=101.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceee--------------------------------ecCCCccccceeeeeeeCCc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIV--------------------------------VDEPGVTRDRMYGRSFWGEH 211 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~~~ 211 (549)
++|+++||+|+|||||+++|+....... ....|.|.+.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 4799999999999999999964321110 11235667777777778888
Q ss_pred eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH
Q 008909 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (549)
Q Consensus 212 ~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~ 291 (549)
++.++||||+.++. +.....+..+|++|+|+|+..+...++.
T Consensus 81 ~~~liDtPGh~~f~--------------------------------------~~~~~~~~~aD~allVVda~~G~~~qt~ 122 (406)
T TIGR02034 81 KFIVADTPGHEQYT--------------------------------------RNMATGASTADLAVLLVDARKGVLEQTR 122 (406)
T ss_pred EEEEEeCCCHHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCccccH
Confidence 99999999986421 1233567889999999999999888887
Q ss_pred HHHHHHHHccCCCeEEEEeccCCCChhhHH---hHH----HH-HHcC---CCceEeeccCCCChhh
Q 008909 292 EIADWLRKNYMDKFIILAVNKCESPRKGIM---QVS----EF-WSLG---FSPLPISAISGTGTGE 346 (549)
Q Consensus 292 ~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~---~~~----~~-~~~~---~~~v~vSA~~g~gi~~ 346 (549)
++...+... ...++++++||+|+...... ... .+ ...+ .+++++||++|.|+.+
T Consensus 123 ~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 123 RHSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 777666554 23468889999998642211 111 11 1223 3689999999999875
No 454
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-13 Score=122.12 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=105.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..++.++|.+|||||.|+-+++...+..+.+ ...-.+.....+.++++ ++.+|||+|++.+..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs-------------- 70 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS-------------- 70 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH--------------
Confidence 4578899999999999999999875333222 22223333445666775 478999999976432
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.+..+++.+-.+|||+|.+...+..... ++.-+++. ..+..++++.||+|+...
T Consensus 71 ------------------------v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 71 ------------------------VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred ------------------------HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 4557788899999999987644333222 22333333 367889999999999765
Q ss_pred hHHhHH---HH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIMQVS---EF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~~~~---~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+.+... .+ ...|+..+++||++++|+++.+..+...+
T Consensus 127 R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 127 REVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHH
Confidence 433221 12 23577888999999999999887665544
No 455
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.52 E-value=8.2e-14 Score=147.54 Aligned_cols=148 Identities=24% Similarity=0.285 Sum_probs=101.8
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeee--------------------------------cCCCccccceeeeeee
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFW 208 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~ 208 (549)
...++|+++||+|+|||||+++|+........ ...|.|.+.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34689999999999999999999754322111 1124555666666667
Q ss_pred CCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCc
Q 008909 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (549)
Q Consensus 209 ~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~ 288 (549)
++.++.+|||||+.++ .+.....+..+|++++|+|+..+...
T Consensus 105 ~~~~i~~iDTPGh~~f--------------------------------------~~~~~~~l~~aD~allVVDa~~G~~~ 146 (474)
T PRK05124 105 EKRKFIIADTPGHEQY--------------------------------------TRNMATGASTCDLAILLIDARKGVLD 146 (474)
T ss_pred CCcEEEEEECCCcHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCccc
Confidence 7889999999997531 11233456889999999999988877
Q ss_pred chHHHHHHHHHccCCCeEEEEeccCCCChhhH---HhHH----HHH-Hc----CCCceEeeccCCCChhhh
Q 008909 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGI---MQVS----EFW-SL----GFSPLPISAISGTGTGEL 347 (549)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~---~~~~----~~~-~~----~~~~v~vSA~~g~gi~~L 347 (549)
++.+....+... ..+++++++||+|+..... .... .+. .. ..+++++||++|.|+..+
T Consensus 147 qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 147 QTRRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cchHHHHHHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 776666555443 1357889999999874211 1111 111 12 356899999999999764
No 456
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.52 E-value=1.1e-13 Score=144.38 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCC--ceeeecCCCccccceeeeeee------------------C--------CceE
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGN--RAIVVDEPGVTRDRMYGRSFW------------------G--------EHEF 213 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~--~~~~~~~~~~t~~~~~~~~~~------------------~--------~~~~ 213 (549)
...+|+++|+.++|||||+.+|.+.. ........|.|.........+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 35789999999999999999997641 111111234554433211111 0 2578
Q ss_pred EEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC-CcchHH
Q 008909 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEE 292 (549)
Q Consensus 214 ~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~-~~~~~~ 292 (549)
.+|||||+.++ ...+...+..+|++++|+|++.+. ..+..+
T Consensus 88 ~liDtPG~~~f--------------------------------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~ 129 (411)
T PRK04000 88 SFVDAPGHETL--------------------------------------MATMLSGAALMDGAILVIAANEPCPQPQTKE 129 (411)
T ss_pred EEEECCCHHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHH
Confidence 99999997542 123446667889999999999876 555556
Q ss_pred HHHHHHHccCCCeEEEEeccCCCChhhHH-----hHHHHHH----cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 293 IADWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 293 ~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-----~~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.+..+... ...|+++|+||+|+.+.... ....+.. .+.+++++||++|.|+++|++.+...++
T Consensus 130 ~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 130 HLMALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 66555443 23468999999998753221 1112221 1457899999999999999999987664
No 457
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=2.8e-13 Score=144.71 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=88.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-----ec----------------CCCCceeeeeEEEEeccCCCeEEEEeCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----VS----------------PISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~~----------------~~~gtt~~~~~~~~~~~~~~~i~l~DTp 428 (549)
+..+++++|++++|||||.++++...... +. ...|.+.......+. +++.++++||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEECC
Confidence 45689999999999999999986421111 10 011444444444454 467899999999
Q ss_pred CccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCC
Q 008909 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (549)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~ 500 (549)
|+.+|. ..++++++.+|++|+|+|++.++..+...+++.+...++|+++++||+|+..
T Consensus 89 G~~df~--------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFS--------------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHH--------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 996642 2456678999999999999998888888888888888999999999999863
No 458
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=4.6e-14 Score=120.94 Aligned_cols=156 Identities=18% Similarity=0.132 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCc--cccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV--TRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~--t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
..+|.|+|.+|||||||+-+++...+ .+...+ -.+.....+.++|. ++.+|||+|.++|+.+..
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~f---d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTp--------- 78 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTF---DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTP--------- 78 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhccc---CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCH---------
Confidence 47899999999999999999996542 222233 34455556677774 578999999998776543
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHH-HHHHHHcc--CCCeEEEEeccCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI-ADWLRKNY--MDKFIILAVNKCES 315 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~-~~~l~~~~--~~~p~ivv~NK~D~ 315 (549)
.+++.+..+|+|+|.+...+.....+ .+.+.-.. .+...++|.||+|.
T Consensus 79 -----------------------------SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 79 -----------------------------SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred -----------------------------hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence 66788999999999877655544432 22222211 24456899999997
Q ss_pred ChhhHHhHHH---H-HHcCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 316 PRKGIMQVSE---F-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 316 ~~~~~~~~~~---~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
...+.....+ + ...+.-++++||++..|+...++.+...+-+.+
T Consensus 130 es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 130 ESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 6544333222 2 223446789999999999999988887765433
No 459
>PRK13351 elongation factor G; Reviewed
Probab=99.52 E-value=2.3e-13 Score=151.59 Aligned_cols=117 Identities=23% Similarity=0.304 Sum_probs=89.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-----ec------C------CCCceeeeeEEEEeccCCCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----VS------P------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~~------~------~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
...+|+++|+.++|||||+++++...... +. + ..+.|+......+. +++.++++|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcHH
Confidence 35689999999999999999998532110 00 0 12445544444444 4678999999999976
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
|. ..+..+++.+|++++|+|++++...+...++..+...++|+++|+||+|+...
T Consensus 86 f~--------------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FT--------------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 52 23456789999999999999988888888888888889999999999998754
No 460
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=116.54 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=111.4
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+.+|+|.+|||||+|+-++.... +.-+....+..+.....+.++|. .+.||||+|.+.++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFr---------------- 71 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFR---------------- 71 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHH----------------
Confidence 345689999999999999998653 22222222334555556667674 57899999987643
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
..+..+.+..+.+++|+|.+.+-+..+. .+++.++..+...|-++|.||.|..+...
T Consensus 72 ----------------------titstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv 129 (198)
T KOG0079|consen 72 ----------------------TITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRV 129 (198)
T ss_pred ----------------------HHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcccee
Confidence 2344667888999999999876554432 35556666777788999999999987654
Q ss_pred HhHHH----HHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 321 MQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 321 ~~~~~----~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
....+ ....|+.++++||+.+.+++..+.-|.+.+...
T Consensus 130 V~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 130 VDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred eehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHH
Confidence 33222 234678899999999999999998887765543
No 461
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.52 E-value=2.1e-13 Score=129.71 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=110.0
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecC-CCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSP-ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~-~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
+|+++|.+|+||||++|.++|...+.... ....|........ ..+|..+.|+||||+.+.... ...... .+.++
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~---~~~~~~-~i~~~ 76 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGS---DEEIIR-EIKRC 76 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEE---HHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCccc---HHHHHH-HHHHH
Confidence 68999999999999999999998776653 2344555544444 358899999999999764210 000111 12222
Q ss_pred -HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh-----CCcEEEEEecccCCCCCchhhhHH-H-HHHHHHHHhcCCC
Q 008909 452 -FRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATY-Y-EQDVREKLRALDW 523 (549)
Q Consensus 452 -~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~-~-~~~~~~~l~~~~~ 523 (549)
.....+.|++|||++.. +++..+...++.+.+. -..+|||++.+|..........-. - ...+.+.++.+++
T Consensus 77 l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp HHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC
Confidence 22346899999999999 7999999999888864 356999999999877654221111 1 1236677777776
Q ss_pred CCEEEEccc------cCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAI------AGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~------~g~~v~~L~~~l~~~~ 548 (549)
.++.++.+ ....+.+|++.|.++.
T Consensus 156 -R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 156 -RYHVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp -CEEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 77777766 3457899998887764
No 462
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.51 E-value=2.7e-13 Score=125.06 Aligned_cols=152 Identities=23% Similarity=0.282 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
....+|+++|..|+||||++++|.......+.+ |.......+.+.+..+.+||.+|....+...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~p----T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w------------ 75 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIP----TIGFNIEEIKYKGYSLTIWDLGGQESFRPLW------------ 75 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEE----ESSEEEEEEEETTEEEEEEEESSSGGGGGGG------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCc----ccccccceeeeCcEEEEEEeccccccccccc------------
Confidence 345689999999999999999999765333332 4455666778889999999999986543322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC--cchHHHHHHHHH-ccCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRK-NYMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~--~~~~~~~~~l~~-~~~~~p~ivv~NK~D~~~ 317 (549)
..++..+|++|||+|+++.-. ....++...+.. ...+.|+++++||.|+..
T Consensus 76 --------------------------~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 76 --------------------------KSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp --------------------------GGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred --------------------------eeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC
Confidence 245678999999999876321 111122222321 235799999999999865
Q ss_pred hhH-HhHHHHH-------HcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 318 KGI-MQVSEFW-------SLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 318 ~~~-~~~~~~~-------~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
... ......+ ...+.++.+||.+|.|+.+.++++.+.
T Consensus 130 ~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 130 AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 321 1111111 123357899999999999999998764
No 463
>PRK00049 elongation factor Tu; Reviewed
Probab=99.51 E-value=1.4e-13 Score=143.10 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCc------e---------eeecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++||+|+|||||+++|++... . ......|+|.+.....+..++.++.++||||+.++
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f-- 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH--
Confidence 356899999999999999999986310 0 11124577777766565667788999999998531
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeE
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (549)
...+...+..+|++++|+|+..+...++.+++.++... +.|+
T Consensus 89 ------------------------------------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~ 130 (396)
T PRK00049 89 ------------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPY 130 (396)
T ss_pred ------------------------------------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCE
Confidence 12344667889999999999988888888888877765 7787
Q ss_pred E-EEeccCCCChhhH-Hh-----HHHHH-Hc-----CCCceEeeccCCC----------ChhhhHHHHHHHhh
Q 008909 307 I-LAVNKCESPRKGI-MQ-----VSEFW-SL-----GFSPLPISAISGT----------GTGELLDLVCSELK 356 (549)
Q Consensus 307 i-vv~NK~D~~~~~~-~~-----~~~~~-~~-----~~~~v~vSA~~g~----------gi~~L~~~i~~~l~ 356 (549)
+ +++||+|+..... .. ...++ .. ..+++++||++|. |+..|++.+...++
T Consensus 131 iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 131 IVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred EEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 5 5899999974221 11 11121 12 2478999999875 45677777766543
No 464
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=138.81 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=126.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+.++++|.+|+||||++|.+...+ ..+.++++||.....+.+.+ ...+++++||||+.+..... .+.+|...
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEd--rN~IEmqs- 240 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEED--RNIIEMQI- 240 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhh--hhHHHHHH-
Confidence 345689999999999999999888664 67899999999888777765 56789999999998754322 12333322
Q ss_pred HHHHHHHhcCCcEEEEEEccc--cCC-HhHHHHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMA--CIT-EQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~--~~~-~~~~~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
-.++.+++.| |||+.|.+. +.+ +++..+.+.|+.. ++|+|+|+||+|.......... .+.+.+.+...++
T Consensus 241 ITALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~---~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 241 ITALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQK---NQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHH---HHHHHHHHHhccC
Confidence 2345566665 999999987 333 5555677777764 8999999999999876654321 3345566666777
Q ss_pred CCEEEEccccCCCHHHHHHHHHhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++.+|+.+.+||.++....+..
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHH
Confidence 899999999999999988776553
No 465
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.51 E-value=1.6e-13 Score=142.95 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCC------Cce---------eeecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGG------NRA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++||.|+|||||+++|++. ... ......|+|.+.....+..++..+.+|||||+.++.
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~- 89 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV- 89 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH-
Confidence 3578999999999999999999743 101 111236788777665555567789999999986421
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeE
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (549)
......+..+|++++|+|+..+...++.+++.++... +.|.
T Consensus 90 -------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~ 130 (394)
T TIGR00485 90 -------------------------------------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPY 130 (394)
T ss_pred -------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCE
Confidence 2334566789999999999988888888888777665 6665
Q ss_pred E-EEeccCCCChhhH-Hh-----HHHHH-HcC-----CCceEeeccCCC
Q 008909 307 I-LAVNKCESPRKGI-MQ-----VSEFW-SLG-----FSPLPISAISGT 342 (549)
Q Consensus 307 i-vv~NK~D~~~~~~-~~-----~~~~~-~~~-----~~~v~vSA~~g~ 342 (549)
+ +++||+|+.+... .. ...++ ..+ ++++++||++|.
T Consensus 131 iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 131 IVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 5 6899999875321 11 11122 122 578999999875
No 466
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.51 E-value=1.7e-13 Score=150.94 Aligned_cols=145 Identities=26% Similarity=0.339 Sum_probs=102.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeee--------------------------------cCCCccccceeeeeeeCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFWGE 210 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~ 210 (549)
..+|+++||+|+|||||+++|+........ ...|+|.+.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 467999999999999999999865322221 113556666666777788
Q ss_pred ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch
Q 008909 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (549)
Q Consensus 211 ~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~ 290 (549)
.++.++||||+.++. ......+..+|++++|+|+..+...++
T Consensus 104 ~~~~liDtPG~~~f~--------------------------------------~~~~~~~~~aD~~llVvda~~g~~~~t 145 (632)
T PRK05506 104 RKFIVADTPGHEQYT--------------------------------------RNMVTGASTADLAIILVDARKGVLTQT 145 (632)
T ss_pred ceEEEEECCChHHHH--------------------------------------HHHHHHHHhCCEEEEEEECCCCccccC
Confidence 899999999985421 123346788999999999998888877
Q ss_pred HHHHHHHHHccCCCeEEEEeccCCCCh--hh-HHhH----HHH-HHcCC---CceEeeccCCCChhh
Q 008909 291 EEIADWLRKNYMDKFIILAVNKCESPR--KG-IMQV----SEF-WSLGF---SPLPISAISGTGTGE 346 (549)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivv~NK~D~~~--~~-~~~~----~~~-~~~~~---~~v~vSA~~g~gi~~ 346 (549)
.++...+... ..+++++++||+|+.. +. .... ..+ ...++ +++++||++|.|+.+
T Consensus 146 ~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 146 RRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 7777666544 2367889999999874 21 1111 111 12333 589999999999874
No 467
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.50 E-value=8.1e-14 Score=126.69 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=101.3
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
+|+++|.+|+|||||+++|.+.... ....+....+.....+.+++. .+.+|||+|...+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---------------- 63 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS---------------- 63 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH----------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-cccccccccccccccccccccccccccccccccccccc----------------
Confidence 5899999999999999999976522 111122113444455566564 478999999754211
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccC-CCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYM-DKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~-~~p~ivv~NK~D~~~~~~ 320 (549)
.....+..+|++|+|+|..++-+.... .+...+..... +.|+++++||.|+.....
T Consensus 64 ----------------------~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 64 ----------------------LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp ----------------------HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred ----------------------cccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 122457789999999998764333222 23344444434 589999999999876322
Q ss_pred Hh---HHH-HHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 321 MQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 321 ~~---~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.. ... ....+.+++++||+++.|+.+++..+.+.+
T Consensus 122 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 122 VSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 111 234567899999999999999998887655
No 468
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=9.3e-14 Score=132.10 Aligned_cols=169 Identities=16% Similarity=0.210 Sum_probs=108.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeee-cCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV-DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
++|+|+|.+|+||||++|.|+|...+... ....+|..+......++|+.+.||||||+.+.......+...+..|+..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 37999999999999999999999865544 34577888988888999999999999999876554444444444444444
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccC---CCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~---~~p~ivv~NK~D~~~~~ 319 (549)
.+ ..+++|||+... .++..+...++.+...+. -..++||++..|.....
T Consensus 81 ~~---------------------------g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 81 SP---------------------------GPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp TT----------------------------ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred cC---------------------------CCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 33 358999999987 788888888887776432 24678889988765432
Q ss_pred H-HhH---------HHHH-HcCCCceEeecc------CCCChhhhHHHHHHHhhhhcc
Q 008909 320 I-MQV---------SEFW-SLGFSPLPISAI------SGTGTGELLDLVCSELKKVEG 360 (549)
Q Consensus 320 ~-~~~---------~~~~-~~~~~~v~vSA~------~g~gi~~L~~~i~~~l~~~~~ 360 (549)
. ... .... ..+-.++.+... ....+.+|+..+...+.++..
T Consensus 133 ~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 133 SLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 1 111 1111 123344444444 234577888888887776553
No 469
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.50 E-value=2.8e-13 Score=135.14 Aligned_cols=161 Identities=24% Similarity=0.274 Sum_probs=122.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCee-----e----------cCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhh
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----V----------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~----------~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~ 435 (549)
..+|+++.+...|||||+..++.+.... + ...-|+|+-.....+. |++.+|+++|||||.+|+=
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCccc
Confidence 4589999999999999999999653221 1 1123788766555554 5889999999999999842
Q ss_pred hccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHH
Q 008909 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR 515 (549)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 515 (549)
...+-+...|.++++||+.++...|.+.+++...+.+.+-|||+||+|...++...+.++....+.
T Consensus 84 --------------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~ 149 (603)
T COG1217 84 --------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV 149 (603)
T ss_pred --------------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 233567899999999999999999999999999999988889999999988766544433333222
Q ss_pred HH---HhcCCCCCEEEEccccCC----------CHHHHHHHHHhh
Q 008909 516 EK---LRALDWAPIVYSTAIAGQ----------SVDKYVLYLATS 547 (549)
Q Consensus 516 ~~---l~~~~~~~~i~iSA~~g~----------~v~~L~~~l~~~ 547 (549)
+. ..++. .|+++.||+.|+ ++.-||+.|.+.
T Consensus 150 ~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~h 193 (603)
T COG1217 150 ELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILDH 193 (603)
T ss_pred HhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHHHHHh
Confidence 21 22333 489999999884 788899988765
No 470
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=3.5e-13 Score=127.09 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=115.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...++.++|.+|+||||++|++++.....+...+-++..... .....++..++||||||+.+-.- -......
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~~~l~lwDtPG~gdg~~-------~D~~~r~ 109 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDGENLVLWDTPGLGDGKD-------KDAEHRQ 109 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhccccceEEecCCCcccchh-------hhHHHHH
Confidence 345788999999999999999997665555544433322222 22234668899999999976321 1122233
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh--CCcEEEEEecccCCCC----------CchhhhHHHHH---HH
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE--GKGCLIVVNKWDTIPN----------KNQQTATYYEQ---DV 514 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~--~~p~ivv~NK~Dl~~~----------~~~~~~~~~~~---~~ 514 (549)
.+..++...|++++++|+.++.-.-+.+.++.+.-. +.++++++|.+|...+ ......+.+.+ .+
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 455567999999999999998777777777665543 5899999999997543 11222222222 23
Q ss_pred HHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 515 REKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 515 ~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++.. -.|++..|+..++|+++|...+.+++
T Consensus 190 ~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 190 GRLFQE--VKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HHHHhh--cCCeEEeccccCccHHHHHHHHHHhC
Confidence 444444 24788889999999999999988764
No 471
>PLN03126 Elongation factor Tu; Provisional
Probab=99.50 E-value=2.3e-13 Score=143.43 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=101.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce---------------eeecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++||+|+|||||+++|++.... ......|+|.+.....+..++..+.+|||||+.++
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f-- 157 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY-- 157 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH--
Confidence 3578999999999999999999853111 11233466766666666677889999999998652
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (549)
...+...+..+|++++|+|+..+...+..+++..+... +.|
T Consensus 158 ------------------------------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~ 199 (478)
T PLN03126 158 ------------------------------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPN 199 (478)
T ss_pred ------------------------------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCe
Confidence 12345667789999999999998888888888777655 677
Q ss_pred EEEEeccCCCChhhH-Hh-----HHHHH-Hc-----CCCceEeeccCCC
Q 008909 306 IILAVNKCESPRKGI-MQ-----VSEFW-SL-----GFSPLPISAISGT 342 (549)
Q Consensus 306 ~ivv~NK~D~~~~~~-~~-----~~~~~-~~-----~~~~v~vSA~~g~ 342 (549)
+++++||+|+.+... .. ...++ .. ..+++++||.+|.
T Consensus 200 iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 200 MVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 778999999975321 11 11122 12 3468999998874
No 472
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.9e-13 Score=123.38 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=107.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.++||||-|+.+++...+. ......+-.+.....+.++|+ ..++|||+|+++++.
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~-~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA-------------- 78 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFS-LESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA-------------- 78 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccC-cccccceeEEEEeeceeecCcEEEEeeecccchhhhcc--------------
Confidence 567999999999999999999976532 233333334444455666775 469999999987543
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~~ 318 (549)
.+..+++.+..+++|+|++...+.... .++..|+... .+.++++|.||+|+...
T Consensus 79 ------------------------itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 79 ------------------------ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred ------------------------ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 233677889999999999776555432 2333444432 57899999999998763
Q ss_pred hHHh----HHHHHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIMQ----VSEFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~~----~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+... ..-....++.++++||..+.+++..+..+...+
T Consensus 135 raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 135 RAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred cccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHH
Confidence 2211 112234577899999999999998887665544
No 473
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.50 E-value=4.3e-13 Score=131.67 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=82.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee-----e----------ecC------CCccccceeeeeeeCCceEEEEEcccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----V----------VDE------PGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~-----~----------~~~------~~~t~~~~~~~~~~~~~~~~liDTpG~ 221 (549)
...|+|+||+|+|||||+++|+...... + .++ .+.+.......+.+.+..+.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3579999999999999999997532111 1 111 122222333466778899999999998
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~ 301 (549)
.++. ..+...+..+|++|+|+|+..+.......+++.+...
T Consensus 82 ~df~--------------------------------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~- 122 (267)
T cd04169 82 EDFS--------------------------------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR- 122 (267)
T ss_pred hHHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-
Confidence 6522 1234667889999999999887766655566555544
Q ss_pred CCCeEEEEeccCCCChh
Q 008909 302 MDKFIILAVNKCESPRK 318 (549)
Q Consensus 302 ~~~p~ivv~NK~D~~~~ 318 (549)
+.|+++++||+|+...
T Consensus 123 -~~P~iivvNK~D~~~a 138 (267)
T cd04169 123 -GIPIITFINKLDREGR 138 (267)
T ss_pred -CCCEEEEEECCccCCC
Confidence 7899999999997654
No 474
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.49 E-value=2.6e-13 Score=142.95 Aligned_cols=146 Identities=25% Similarity=0.223 Sum_probs=99.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCcee------------------------------eecCCCccccceeeeeeeCCc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWGEH 211 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 211 (549)
...+|+++||+|+|||||+++|+...... .....|+|.+.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 45789999999999999999998421110 112347788887777888888
Q ss_pred eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC---CCc
Q 008909 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTA 288 (549)
Q Consensus 212 ~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~---~~~ 288 (549)
.+.+|||||+.++ .......+..+|++++|+|++.+ ...
T Consensus 86 ~i~iiDtpGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~ 127 (426)
T TIGR00483 86 EVTIVDCPGHRDF--------------------------------------IKNMITGASQADAAVLVVAVGDGEFEVQP 127 (426)
T ss_pred EEEEEECCCHHHH--------------------------------------HHHHHhhhhhCCEEEEEEECCCCCcccCC
Confidence 9999999998542 12233556789999999999887 333
Q ss_pred chHHHHHHHHHccCCCeEEEEeccCCCChh--h-H----HhHHHHH-HcC-----CCceEeeccCCCChhh
Q 008909 289 ADEEIADWLRKNYMDKFIILAVNKCESPRK--G-I----MQVSEFW-SLG-----FSPLPISAISGTGTGE 346 (549)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~--~-~----~~~~~~~-~~~-----~~~v~vSA~~g~gi~~ 346 (549)
+..+...++... ...++++++||+|+... . . .+...+. ..+ ++++++||++|.|+.+
T Consensus 128 ~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 128 QTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred chHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 333433333332 24578999999998631 1 1 1111222 122 4689999999999976
No 475
>PTZ00099 rab6; Provisional
Probab=99.49 E-value=3.6e-13 Score=124.14 Aligned_cols=128 Identities=18% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHH-HH
Q 008909 401 PISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDC-RI 478 (549)
Q Consensus 401 ~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~ 478 (549)
..|+...+.....+...+ ..++.||||||+.++..+ ...++++||++|+|+|++++.+.+.. .|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~--------------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w 74 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL--------------IPSYIRDSAAAIVVYDITNRQSFENTTKW 74 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhc--------------cHHHhCCCcEEEEEEECCCHHHHHHHHHH
Confidence 344444555444443322 357899999999765321 22367999999999999986554444 35
Q ss_pred HHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 479 AERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 479 l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+..+... +.|++||+||+|+...+.... .+........ ...++++||++|.||+++|++|.+.+
T Consensus 75 ~~~i~~~~~~~~piilVgNK~DL~~~~~v~~-----~e~~~~~~~~-~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 75 IQDILNERGKDVIIALVGNKTDLGDLRKVTY-----EEGMQKAQEY-NTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred HHHHHHhcCCCCeEEEEEECcccccccCCCH-----HHHHHHHHHc-CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5555442 578899999999965433221 1222333333 34789999999999999999998754
No 476
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.49 E-value=1e-12 Score=135.50 Aligned_cols=89 Identities=29% Similarity=0.280 Sum_probs=68.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec--------------------cC---CCeEEEEeCC
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------PE---GQKFRLIDTA 428 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~--------------------~~---~~~i~l~DTp 428 (549)
.+|+++|.+|+|||||+|++++.. +.+.++|++|++........ .+ ..++.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 378999999999999999999875 56788899998887754331 11 2468899999
Q ss_pred CccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcc
Q 008909 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (549)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~ 468 (549)
|+.+.. ........+.+..++.||++++|+|+.
T Consensus 81 Gl~~ga-------~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGA-------HEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCc-------cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 996521 111233456778899999999999997
No 477
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.49 E-value=4.3e-13 Score=116.54 Aligned_cols=139 Identities=22% Similarity=0.224 Sum_probs=95.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH-
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA- 451 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~- 451 (549)
+++++|.+++|||||.++|.+.... .. -|.. +.+.+ .++||||-. .|...+.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~---~~--KTq~-----i~~~~----~~IDTPGEy-----------iE~~~~y~aL 57 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR---YK--KTQA-----IEYYD----NTIDTPGEY-----------IENPRFYHAL 57 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC---cC--ccce-----eEecc----cEEECChhh-----------eeCHHHHHHH
Confidence 7899999999999999999886421 11 1111 11211 459999962 222222223
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
......||++++|.|++++....--. ...-.++|+|=|+||+|+..... -.++.++.|+..+...+|++|+
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~pP~---fa~~f~~pvIGVITK~Dl~~~~~------~i~~a~~~L~~aG~~~if~vS~ 128 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFPPG---FASMFNKPVIGVITKIDLPSDDA------NIERAKKWLKNAGVKEIFEVSA 128 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCCch---hhcccCCCEEEEEECccCccchh------hHHHHHHHHHHcCCCCeEEEEC
Confidence 33457999999999999853211111 12234689999999999983221 1455667788888888999999
Q ss_pred ccCCCHHHHHHHHH
Q 008909 532 IAGQSVDKYVLYLA 545 (549)
Q Consensus 532 ~~g~~v~~L~~~l~ 545 (549)
.+|+||++|.++|.
T Consensus 129 ~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 129 VTGEGIEELKDYLE 142 (143)
T ss_pred CCCcCHHHHHHHHh
Confidence 99999999999985
No 478
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.49 E-value=4.9e-13 Score=115.47 Aligned_cols=152 Identities=20% Similarity=0.284 Sum_probs=111.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|.|+|..|+||||++++|.+.... ....|...+...+.+++..+.+||.+|....
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~----~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~l------------------ 73 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTD----TISPTLGFQIKTLEYKGYTLNIWDVGGQKTL------------------ 73 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCcc----ccCCccceeeEEEEecceEEEEEEcCCcchh------------------
Confidence 678999999999999999999988632 3344666777788899999999999998542
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHH-HHccCCCeEEEEeccCCCChh-
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWL-RKNYMDKFIILAVNKCESPRK- 318 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l-~~~~~~~p~ivv~NK~D~~~~- 318 (549)
......++..+|.+|+|+|.+++...+.. ++...| .+...+.|++++.||.|+...
T Consensus 74 --------------------r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l 133 (185)
T KOG0073|consen 74 --------------------RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL 133 (185)
T ss_pred --------------------HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc
Confidence 23556888999999999998765433321 222233 234568999999999998732
Q ss_pred ---hHHhH---HHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 ---GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ---~~~~~---~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
..... ... ...+++++-+||.+|+++.+-++++...+.
T Consensus 134 ~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 134 SLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred CHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence 11111 112 234568899999999999998888887664
No 479
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.4e-13 Score=114.05 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=106.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|..|||||-|+.+++..- ++.+....+..+.+...+.++| .++.+|||+|.++++.
T Consensus 7 lfkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs-------------- 71 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS-------------- 71 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH--------------
Confidence 5689999999999999999999653 3333333344556667777777 4579999999987543
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHcc-CCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivv~NK~D~~~~ 318 (549)
.+..+++.++.+|+|+|.+...+... .+++..+.... .+.--|+|.||+|+.+.
T Consensus 72 ------------------------itqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 72 ------------------------ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred ------------------------HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 34477888999999999987555443 34555454432 23445899999999876
Q ss_pred hHHhHH---HHHH-cCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIMQVS---EFWS-LGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~~~~---~~~~-~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
...... ++.. ...-+.++||+...+++.|+..+...+
T Consensus 128 revp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 128 REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 433221 1111 223467899999999999987776544
No 480
>PTZ00258 GTP-binding protein; Provisional
Probab=99.48 E-value=1.5e-12 Score=132.74 Aligned_cols=92 Identities=28% Similarity=0.320 Sum_probs=73.0
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC----------------CCeEEEEeCCCccc
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRK 432 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~----------------~~~i~l~DTpG~~~ 432 (549)
....+|+++|.||+|||||+|++++.. ..+.++|+||++.....+...+ +.++.++||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 345689999999999999999998875 6888999999998887776543 23599999999975
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcc
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~ 468 (549)
.. ........+.+..++.+|++++|+|+.
T Consensus 98 ga-------~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GA-------SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CC-------cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 32 122234557788899999999999984
No 481
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.47 E-value=1.6e-12 Score=124.76 Aligned_cols=142 Identities=19% Similarity=0.300 Sum_probs=101.1
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
.....|+++|.+|+||||++|.+++.. ........|+. . ... ..+.++.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i----~-i~~-~~~~~i~~vDtPg~~---------------- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI----T-VVT-GKKRRLTFIECPNDI---------------- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE----E-EEe-cCCceEEEEeCCchH----------------
Confidence 345679999999999999999998752 12222333431 1 111 357889999999862
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEE-EEecccCCCCCchhhhHHHHHHHHHHHh--cCCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLI-VVNKWDTIPNKNQQTATYYEQDVREKLR--ALDWA 524 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~iv-v~NK~Dl~~~~~~~~~~~~~~~~~~~l~--~~~~~ 524 (549)
..+...++.+|++++|+|++.++..++..++..+...+.|.++ |+||+|+..... ..+.+.+.+++.+. ...+.
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNK--TLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHH--HHHHHHHHHHHHHHHhhCCCC
Confidence 2344457899999999999998888888899999888888655 999999875322 12334455555443 34578
Q ss_pred CEEEEccccCC
Q 008909 525 PIVYSTAIAGQ 535 (549)
Q Consensus 525 ~~i~iSA~~g~ 535 (549)
+++++||+++.
T Consensus 172 ki~~iSa~~~~ 182 (225)
T cd01882 172 KLFYLSGIVHG 182 (225)
T ss_pred cEEEEeeccCC
Confidence 99999999874
No 482
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=9.4e-13 Score=125.82 Aligned_cols=154 Identities=16% Similarity=0.077 Sum_probs=96.9
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceee--eeeeC--CceEEEEEcccccccCCCCcchhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG--RSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
...+|+++|.+|||||||+++++..... .. ...|...... .+..+ ...+.+|||+|...+..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~--~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~----------- 73 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE-KK--YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG----------- 73 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC-CC--CCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh-----------
Confidence 4578999999999999999876643311 11 1122222222 22222 35678999999754322
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCC
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
.....+..++++++|+|.+...+.... .+...+.....+.|+++++||+|+.
T Consensus 74 ---------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 74 ---------------------------LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred ---------------------------hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 112445678999999998765443322 1223333333578999999999986
Q ss_pred hhhHH-hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 317 RKGIM-QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 317 ~~~~~-~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+.... .... ....++.++++||++|.|+++++..+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 127 DRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred cccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 43211 1112 2234567899999999999999988877664
No 483
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.47 E-value=4.7e-13 Score=131.67 Aligned_cols=157 Identities=23% Similarity=0.340 Sum_probs=114.5
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh-HHHHHHcCCCceEeeccCCC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFWSLGFSPLPISAISGT 342 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~-~~~~~~~~~~~v~vSA~~g~ 342 (549)
+.+...+..+|+||.|+|+++|+.....+.-+++.....++..|+|+||+|+.+.+... ...++...++.++.-|-++.
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~ 217 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQM 217 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccc
Confidence 45667788999999999999999998888888887654568999999999999876554 55566655554443332221
Q ss_pred --------------ChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceee
Q 008909 343 --------------GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRD 408 (549)
Q Consensus 343 --------------gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~ 408 (549)
|.+.++..+..+.. ........+++++|.+|+||||++|+|.......++..||.|+.
T Consensus 218 ~~~~~~~~~~s~c~gae~l~~~lgny~~--------~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s 289 (435)
T KOG2484|consen 218 QNSNSKNLQSSVCFGAETLMKVLGNYCR--------KGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS 289 (435)
T ss_pred ccccccccccchhhhHHHHHHHhcCccc--------ccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh
Confidence 22222222222111 11224567899999999999999999999988999999999987
Q ss_pred eeEEEEeccCCCeEEEEeCCCccc
Q 008909 409 AIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 409 ~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
...+.+ +..|.|+|.||+.-
T Consensus 290 mqeV~L----dk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 290 MQEVKL----DKKIRLLDSPGIVP 309 (435)
T ss_pred hhheec----cCCceeccCCceee
Confidence 654433 45789999999954
No 484
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.46 E-value=2.5e-13 Score=120.76 Aligned_cols=146 Identities=22% Similarity=0.196 Sum_probs=94.2
Q ss_pred EEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee--CCceEEEEEcccccccCCCCcchhhhhhhhhcccccC
Q 008909 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (549)
Q Consensus 168 i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~G 245 (549)
++|++|+|||||+|+|.+.... ......+........... .+..+.+|||||......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------------- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS------------------- 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-------------------
Confidence 5799999999999999987532 111112222222222222 256789999999865221
Q ss_pred CchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHH---HHHHHccCCCeEEEEeccCCCChhhHHh
Q 008909 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA---DWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (549)
Q Consensus 246 i~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~---~~l~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (549)
.....+..+|++++|+|...+......... ........+.|+++++||+|+.......
T Consensus 61 -------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 61 -------------------LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred -------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 113456789999999998875444333321 1122233588999999999987543322
Q ss_pred HH-----HHHHcCCCceEeeccCCCChhhhHHHHH
Q 008909 323 VS-----EFWSLGFSPLPISAISGTGTGELLDLVC 352 (549)
Q Consensus 323 ~~-----~~~~~~~~~v~vSA~~g~gi~~L~~~i~ 352 (549)
.. .......+++++|+.++.|+.++++++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 21 1223456899999999999999988764
No 485
>PLN00023 GTP-binding protein; Provisional
Probab=99.46 E-value=6.6e-13 Score=130.87 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=82.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc--------------CCCeEEEEeCCCccchhh
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--------------EGQKFRLIDTAGIRKRAA 435 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~--------------~~~~i~l~DTpG~~~~~~ 435 (549)
...+|+++|..|+|||||++++++.. +.....+++..+.....+.+. ....+.||||+|+.++..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~-F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGS-SIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC-cccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 34689999999999999999999764 333334443333332223221 123589999999977643
Q ss_pred hccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---------------CCcEEEEEecccCC
Q 008909 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---------------GKGCLIVVNKWDTI 499 (549)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---------------~~p~ivv~NK~Dl~ 499 (549)
+ ...+++++|++|+|+|+++..+.+.+. |+..+... ++|++||+||+|+.
T Consensus 99 L--------------~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 99 C--------------RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred h--------------hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 1 122589999999999999876665554 66666653 37899999999996
Q ss_pred CC
Q 008909 500 PN 501 (549)
Q Consensus 500 ~~ 501 (549)
..
T Consensus 165 ~~ 166 (334)
T PLN00023 165 PK 166 (334)
T ss_pred cc
Confidence 54
No 486
>PRK00007 elongation factor G; Reviewed
Probab=99.45 E-value=3.5e-13 Score=149.70 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=103.5
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCc-----eeee------------cCCCccccceeeeeeeCCceEEEEEccccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~ 224 (549)
+..+|+|+|++|+|||||+|+|+.... ..+. ...++|.+.....+.+.+..+.++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 467999999999999999999973211 0111 35678888888888899999999999998542
Q ss_pred CCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCC
Q 008909 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (549)
Q Consensus 225 ~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (549)
. ..+.+.+..+|++++|+|+..+...++..++..+.+. ++
T Consensus 89 ~--------------------------------------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~ 128 (693)
T PRK00007 89 T--------------------------------------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KV 128 (693)
T ss_pred H--------------------------------------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CC
Confidence 1 1345677889999999999999999998888888776 78
Q ss_pred eEEEEeccCCCChhhHHhHHHHHH--cCC----CceEeeccCC
Q 008909 305 FIILAVNKCESPRKGIMQVSEFWS--LGF----SPLPISAISG 341 (549)
Q Consensus 305 p~ivv~NK~D~~~~~~~~~~~~~~--~~~----~~v~vSA~~g 341 (549)
|+++++||+|+............. .+. ..+|+|+..+
T Consensus 129 p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 129 PRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 999999999987644332222211 121 3467777665
No 487
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.45 E-value=9.7e-13 Score=123.79 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=98.5
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeee-cCCC---ccccceeeeeee-CCceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV-DEPG---VTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~-~~~~---~t~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
++|+++|.+|+|||||+|+|+|....... ...+ +|..... +.. ....+.+|||||+.........+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~------- 72 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDY------- 72 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHH-------
Confidence 57999999999999999999985422111 1111 2222211 111 13478999999987532211110
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
+. ...+..+|++++|.+ .+++..+..+.+.+... +.|+++|+||+|+...
T Consensus 73 -----------------------l~---~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 73 -----------------------LE---EMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLS 122 (197)
T ss_pred -----------------------HH---HhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhh
Confidence 00 112456898888865 35677777788888775 7899999999998432
Q ss_pred hH----------HhHH--------HHH-HcC---CCceEeecc--CCCChhhhHHHHHHHhhhhc
Q 008909 319 GI----------MQVS--------EFW-SLG---FSPLPISAI--SGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 319 ~~----------~~~~--------~~~-~~~---~~~v~vSA~--~g~gi~~L~~~i~~~l~~~~ 359 (549)
.. .+.. ... ..+ .+++.+|+. .+.++..|.+.+...+++..
T Consensus 123 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 123 NEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 11 1111 011 112 267889998 67899999999888877543
No 488
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.45 E-value=4.5e-13 Score=132.37 Aligned_cols=144 Identities=21% Similarity=0.321 Sum_probs=95.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCcee-----eec------------CCCccccceeeeeeeCCceEEEEEcccccccCCC
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAI-----VVD------------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 227 (549)
+|+|+|++|+|||||+++|++..... +.. ..+.|.......+.+++..+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 48999999999999999997532111 100 11334444455667788899999999986421
Q ss_pred CcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEE
Q 008909 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (549)
Q Consensus 228 ~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (549)
..+...+..+|.+++|+|+..+.......+++.+... +.|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~--~~p~i 120 (268)
T cd04170 79 ------------------------------------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA--GIPRI 120 (268)
T ss_pred ------------------------------------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2345677889999999999987776666666666654 78999
Q ss_pred EEeccCCCChhhHHhHHHHH--HcCCCceEee--ccCCCChhhhH
Q 008909 308 LAVNKCESPRKGIMQVSEFW--SLGFSPLPIS--AISGTGTGELL 348 (549)
Q Consensus 308 vv~NK~D~~~~~~~~~~~~~--~~~~~~v~vS--A~~g~gi~~L~ 348 (549)
+++||+|............. ..+.++++++ ..+|.++..+.
T Consensus 121 ivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 121 IFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred EEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEE
Confidence 99999998765332222221 1344555443 45555554433
No 489
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.45 E-value=7.7e-13 Score=139.08 Aligned_cols=145 Identities=20% Similarity=0.204 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce------------------------------eeecCCCccccceeeeeeeCCc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEH 211 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 211 (549)
...+|+++||.++|||||+.+|+..... ......|.|.+.....+.++++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3568999999999999999998742100 0112346677766667778888
Q ss_pred eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC-----
Q 008909 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----- 286 (549)
Q Consensus 212 ~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~----- 286 (549)
.+.++||||+.++ .+.+...+..+|++++|+|+..+.
T Consensus 86 ~i~lIDtPGh~~f--------------------------------------~~~~~~g~~~aD~ailVVda~~G~~e~~~ 127 (446)
T PTZ00141 86 YFTIIDAPGHRDF--------------------------------------IKNMITGTSQADVAILVVASTAGEFEAGI 127 (446)
T ss_pred EEEEEECCChHHH--------------------------------------HHHHHHhhhhcCEEEEEEEcCCCceeccc
Confidence 9999999998652 124456778899999999998875
Q ss_pred --CcchHHHHHHHHHccCCCe-EEEEeccCCCC--h---hhHHh----HHHHH-Hc-----CCCceEeeccCCCChhh
Q 008909 287 --TAADEEIADWLRKNYMDKF-IILAVNKCESP--R---KGIMQ----VSEFW-SL-----GFSPLPISAISGTGTGE 346 (549)
Q Consensus 287 --~~~~~~~~~~l~~~~~~~p-~ivv~NK~D~~--~---~~~~~----~~~~~-~~-----~~~~v~vSA~~g~gi~~ 346 (549)
..+..+++..+... +.| +++++||+|.. + ..... ....+ .. .++++|+||.+|.|+.+
T Consensus 128 ~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 128 SKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCccHHHHHHHHHHc--CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 35677777766654 655 67899999943 2 11111 11111 12 34689999999999864
No 490
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.45 E-value=1.1e-12 Score=137.37 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=105.8
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCce--eeecCCCccccceeeeee---------------e---------------
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSF---------------W--------------- 208 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~~---------------~--------------- 208 (549)
+...+|+++||.+.|||||+.+|+|.... ......|.|.+..+.... +
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 34578999999999999999999975321 112223444333222110 0
Q ss_pred ---CCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC
Q 008909 209 ---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285 (549)
Q Consensus 209 ---~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~ 285 (549)
-.+.+.++||||+.++ .+.+...+..+|.+++|+|+..+
T Consensus 112 ~~~~~~~i~~IDtPGH~~f--------------------------------------i~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDIL--------------------------------------MATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred cccccceEeeeeCCCHHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCC
Confidence 0246899999998542 23445777889999999999875
Q ss_pred -CCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-h----HHHHHH----cCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 286 -LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q----VSEFWS----LGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 286 -~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~----~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
...+..+++..+... .-.++++|+||+|+.+.... . ...+.. ...+++++||++|.|++.|++.+...+
T Consensus 154 ~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 154 CPQPQTSEHLAAVEIM-KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred ccchhhHHHHHHHHHc-CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 566666665544433 23568899999999753221 1 111111 356899999999999999999998766
Q ss_pred hh
Q 008909 356 KK 357 (549)
Q Consensus 356 ~~ 357 (549)
+.
T Consensus 233 p~ 234 (460)
T PTZ00327 233 PI 234 (460)
T ss_pred CC
Confidence 53
No 491
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=5.7e-13 Score=133.39 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=115.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCC--------------ceeeecCCCccccceeeeeeeCC-----ceEEEEEccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGN--------------RAIVVDEPGVTRDRMYGRSFWGE-----HEFMLVDTGGVL 222 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~-----~~~~liDTpG~~ 222 (549)
+....+|+-|-+.|||||.++|+... ........|+|...+...+.+.. +.+.+|||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 35667899999999999999987431 11233456788877777665532 568999999999
Q ss_pred ccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccC
Q 008909 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (549)
Q Consensus 223 ~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~ 302 (549)
+|+.. ..+.++.|...|||||++.+...+...-. ......
T Consensus 88 DFsYE--------------------------------------VSRSLAACEGalLvVDAsQGveAQTlAN~--YlAle~ 127 (603)
T COG0481 88 DFSYE--------------------------------------VSRSLAACEGALLVVDASQGVEAQTLANV--YLALEN 127 (603)
T ss_pred ceEEE--------------------------------------ehhhHhhCCCcEEEEECccchHHHHHHHH--HHHHHc
Confidence 87542 23778889999999999999887754432 222223
Q ss_pred CCeEEEEeccCCCChhhHHhHHHHH--HcCC---CceEeeccCCCChhhhHHHHHHHhhhhcc
Q 008909 303 DKFIILAVNKCESPRKGIMQVSEFW--SLGF---SPLPISAISGTGTGELLDLVCSELKKVEG 360 (549)
Q Consensus 303 ~~p~ivv~NK~D~~~~~~~~~~~~~--~~~~---~~v~vSA~~g~gi~~L~~~i~~~l~~~~~ 360 (549)
+.-++-|+||+|+...+........ -.|+ ..+.+||++|.|++++++.|.+.++....
T Consensus 128 ~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 128 NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 8889999999999765433322221 2344 47899999999999999999999875543
No 492
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.44 E-value=1.5e-12 Score=124.20 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=75.8
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceee------------e------cCCCccccceeeeeeeC-----CceEEEEEcccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIV------------V------DEPGVTRDRMYGRSFWG-----EHEFMLVDTGGV 221 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~------------~------~~~~~t~~~~~~~~~~~-----~~~~~liDTpG~ 221 (549)
+|+++|++|+|||||+++|++...... . ...++|.......+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432211 0 11223333222222222 256899999998
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~ 301 (549)
.++. ..+..++..+|++++|+|+..+.......+.+.+...
T Consensus 82 ~~f~--------------------------------------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~- 122 (213)
T cd04167 82 VNFM--------------------------------------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE- 122 (213)
T ss_pred cchH--------------------------------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-
Confidence 7531 2344677889999999999887766555555544433
Q ss_pred CCCeEEEEeccCCCC
Q 008909 302 MDKFIILAVNKCESP 316 (549)
Q Consensus 302 ~~~p~ivv~NK~D~~ 316 (549)
+.|+++|+||+|+.
T Consensus 123 -~~p~iiviNK~D~~ 136 (213)
T cd04167 123 -GLPIVLVINKIDRL 136 (213)
T ss_pred -CCCEEEEEECcccC
Confidence 68999999999975
No 493
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.44 E-value=7.7e-13 Score=147.14 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCcee-----ee------------cCCCccccceeeeeeeCCceEEEEEcccccc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAI-----VV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~ 223 (549)
.+..+|+|+||+|+|||||+|+|+...... +. ...|+|.+.....+.+++..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 346799999999999999999997432111 11 1357788888888899999999999999965
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+.. .+..++..+|++++|+|+..+...++..++.++... +
T Consensus 88 ~~~--------------------------------------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~ 127 (689)
T TIGR00484 88 FTV--------------------------------------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY--E 127 (689)
T ss_pred hhH--------------------------------------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc--C
Confidence 321 234677889999999999988888777777777665 7
Q ss_pred CeEEEEeccCCCChhh
Q 008909 304 KFIILAVNKCESPRKG 319 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~ 319 (549)
.|+++++||+|+....
T Consensus 128 ~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 128 VPRIAFVNKMDKTGAN 143 (689)
T ss_pred CCEEEEEECCCCCCCC
Confidence 8999999999987543
No 494
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=2.6e-13 Score=115.92 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=106.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccc--eeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR--MYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
..+|+++|..-||||||+-+++..++ ....-.|.+. ....+.+.+ .++.||||+|.+.+..+-+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF---n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP--------- 80 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKF---NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP--------- 80 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhc---chhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc---------
Confidence 57899999999999999999886542 1122222222 223344444 3578999999998766543
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESP 316 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~ 316 (549)
-+++..+.+|+|+|+++..+.+.. .++..|+... ....++||.||+|+.
T Consensus 81 -----------------------------IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 81 -----------------------------IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred -----------------------------eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 456778999999999876555432 2334444432 346689999999998
Q ss_pred hhhHHhHHH----HHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 317 RKGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 317 ~~~~~~~~~----~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
++......+ ....|..++.+||+.+.|+.+++..+...+-+.
T Consensus 132 eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 132 EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHH
Confidence 765433322 233466789999999999999999887766543
No 495
>PRK12740 elongation factor G; Reviewed
Probab=99.44 E-value=2e-12 Score=143.88 Aligned_cols=110 Identities=26% Similarity=0.291 Sum_probs=85.1
Q ss_pred eCCCCCChhHHHHHHhcCCCeeec-----------------CCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccC
Q 008909 377 VGRPNVGKSSILNALVGEDRTIVS-----------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASS 439 (549)
Q Consensus 377 ~G~~~~GKssl~n~ll~~~~~~~~-----------------~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~ 439 (549)
+|+.++|||||.++|+........ ...|.|.......+. +++..+++|||||+.++.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~~~----- 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVDFT----- 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHHHH-----
Confidence 589999999999999754322111 123566665555555 467899999999996532
Q ss_pred CChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 440 ~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
..+...++.+|++++|+|++.+...+...++..+...++|+++|+||+|+...
T Consensus 75 ---------~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 75 ---------GEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred ---------HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 23455788999999999999988888888888888889999999999998754
No 496
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.1e-12 Score=127.08 Aligned_cols=152 Identities=21% Similarity=0.242 Sum_probs=114.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeee--------------------------------cCCCCceeeeeEEEEeccC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV--------------------------------SPISGTTRDAIDTEFTGPE 418 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~--------------------------------~~~~gtt~~~~~~~~~~~~ 418 (549)
..+++.+|...-|||||+-+|+....... .-.-|+|+|+....|. .+
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs-T~ 84 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS-TE 84 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc-cc
Confidence 45788999999999999999996432110 0112899998777665 37
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEeccc
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWD 497 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~D 497 (549)
.+++.+.|||||+.+ .+.+.-...-||++|++||+..++.+|.++..-...-.+++ +++++||||
T Consensus 85 KRkFIiADTPGHeQY--------------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmD 150 (431)
T COG2895 85 KRKFIIADTPGHEQY--------------TRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMD 150 (431)
T ss_pred cceEEEecCCcHHHH--------------hhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeec
Confidence 889999999999653 23344456789999999999999999999877666666765 777889999
Q ss_pred CCCCCchhhhHHHHHHHHHHHhcCCCC--CEEEEccccCCCHH
Q 008909 498 TIPNKNQQTATYYEQDVREKLRALDWA--PIVYSTAIAGQSVD 538 (549)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~i~iSA~~g~~v~ 538 (549)
|.+-.+ ..++.+..++..+.++++.. .++|+||+.|.||-
T Consensus 151 Lvdy~e-~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 151 LVDYSE-EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ccccCH-HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 987544 44556666666666666543 68999999999874
No 497
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=4.6e-14 Score=123.04 Aligned_cols=158 Identities=20% Similarity=0.170 Sum_probs=111.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEe-ccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT-GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~-~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+++++|..++||||++.++|.. .+...+.-.+..|....... ..+...+.+|||+|+++|-.+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaI------------ 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI------------ 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHH------------
Confidence 3568899999999999999999964 34333333333333222111 123457789999999876432
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
+..++|+|.+.+||+.-+++.+++-. .|-+.+.+. .+|+++|-||+|++.+...... ..+-+.+.....
T Consensus 86 --tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~------evE~lak~l~~R 157 (246)
T KOG4252|consen 86 --TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKG------EVEGLAKKLHKR 157 (246)
T ss_pred --HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchH------HHHHHHHHhhhh
Confidence 33578999999999999987665443 455666654 7999999999999876554321 122233333457
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++-+|++...||..+|.+|++.+
T Consensus 158 lyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 158 LYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 89999999999999999998754
No 498
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.43 E-value=2.3e-12 Score=132.87 Aligned_cols=88 Identities=24% Similarity=0.360 Sum_probs=68.1
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee---------------------CC---ceEEEEEcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------GE---HEFMLVDTG 219 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~---~~~~liDTp 219 (549)
++|+|+|.||||||||+|+|++.. +.+++++++|.++..+.+.+ ++ .++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 579999999999999999999886 46688999999888876542 11 457899999
Q ss_pred cccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCC
Q 008909 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (549)
Q Consensus 220 G~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~ 283 (549)
|+........ -+..+++..++.+|++++|+|+.
T Consensus 81 Gl~~ga~~g~-------------------------------glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGR-------------------------------GLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchh-------------------------------hHHHHHHHHHHHCCEEEEEEeCC
Confidence 9865322111 13456778899999999999986
No 499
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.43 E-value=5.1e-12 Score=121.01 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=102.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|..|+|||||++++.+.... ....++.+........... ...++.+|||+|+.++.. .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~--------------~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS--------------L 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc-ccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH--------------H
Confidence 58999999999999999999987533 2233333333333222221 145689999999976432 1
Q ss_pred HHHHHhcCCcEEEEEEcccc--CCHhHHHHHHHHHHh---CCcEEEEEecccCCCCCchhhh---------HHHHHHHHH
Q 008909 451 AFRAIRRSDVVALVIEAMAC--ITEQDCRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTA---------TYYEQDVRE 516 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~--~~~~~~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~---------~~~~~~~~~ 516 (549)
.-.++++++++++|+|.+.. ..+-...|...+... ..|+++|+||+|+......... .........
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence 22367999999999999862 223333466666664 4899999999999875431100 000011111
Q ss_pred HHhcCCCCCEEEEccc--cCCCHHHHHHHHHhh
Q 008909 517 KLRALDWAPIVYSTAI--AGQSVDKYVLYLATS 547 (549)
Q Consensus 517 ~l~~~~~~~~i~iSA~--~g~~v~~L~~~l~~~ 547 (549)
.........++.+|++ .+.||.++|..+...
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~ 183 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGPNVNELFKELLRK 183 (219)
T ss_pred hhhhhcccceeEeecccCCCcCHHHHHHHHHHH
Confidence 1111122348999999 999999999987664
No 500
>PRK12739 elongation factor G; Reviewed
Probab=99.43 E-value=1.1e-12 Score=145.71 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce-----eee------------cCCCccccceeeeeeeCCceEEEEEccccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~-----~~~------------~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~ 224 (549)
...+|+|+||+|+|||||+++|+..... .+. ...++|.+.....+.+++..+.++||||+.++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4678999999999999999999743111 111 25678888888888899999999999998542
Q ss_pred CCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCC
Q 008909 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (549)
Q Consensus 225 ~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (549)
. ..+.+++..+|++|+|+|+..+...++..++..+... ++
T Consensus 87 ~--------------------------------------~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--~~ 126 (691)
T PRK12739 87 T--------------------------------------IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--GV 126 (691)
T ss_pred H--------------------------------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CC
Confidence 1 2355778889999999999999888888888877765 78
Q ss_pred eEEEEeccCCCChhh
Q 008909 305 FIILAVNKCESPRKG 319 (549)
Q Consensus 305 p~ivv~NK~D~~~~~ 319 (549)
|+++++||+|+....
T Consensus 127 p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 127 PRIVFVNKMDRIGAD 141 (691)
T ss_pred CEEEEEECCCCCCCC
Confidence 999999999988643
Done!