Query 008909
Match_columns 549
No_of_seqs 584 out of 4386
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mky_A Probable GTP-binding pr 100.0 8.3E-47 2.8E-51 397.9 34.2 350 164-548 2-353 (439)
2 2hjg_A GTP-binding protein ENG 100.0 7.7E-48 2.6E-52 405.5 25.2 344 163-548 3-347 (436)
3 4dcu_A GTP-binding protein ENG 100.0 3.2E-46 1.1E-50 395.4 26.2 345 162-548 22-367 (456)
4 3iev_A GTP-binding protein ERA 99.9 1.5E-21 5.1E-26 195.5 19.6 171 370-548 9-180 (308)
5 2gj8_A MNME, tRNA modification 99.9 5.5E-22 1.9E-26 181.4 14.5 158 371-548 4-164 (172)
6 1wf3_A GTP-binding protein; GT 99.9 7.6E-22 2.6E-26 196.5 16.1 163 371-548 7-171 (301)
7 4dhe_A Probable GTP-binding pr 99.9 2.6E-21 8.9E-26 184.4 14.9 173 370-548 28-209 (223)
8 1xzp_A Probable tRNA modificat 99.9 2.9E-21 9.9E-26 203.6 15.4 161 370-548 242-403 (482)
9 3gee_A MNME, tRNA modification 99.8 1.5E-21 5E-26 205.7 11.5 161 370-548 232-396 (476)
10 2dyk_A GTP-binding protein; GT 99.8 1E-20 3.5E-25 170.2 15.4 159 372-548 2-160 (161)
11 3pqc_A Probable GTP-binding pr 99.8 3.1E-20 1.1E-24 172.5 18.5 167 370-548 22-192 (195)
12 1svi_A GTP-binding protein YSX 99.8 2.4E-20 8.2E-25 173.6 17.5 167 370-548 22-193 (195)
13 1mky_A Probable GTP-binding pr 99.8 9E-21 3.1E-25 199.3 16.0 162 372-548 2-164 (439)
14 4dkx_A RAS-related protein RAB 99.8 1.3E-20 4.3E-25 178.6 14.6 157 371-548 13-174 (216)
15 2dyk_A GTP-binding protein; GT 99.8 2.8E-20 9.4E-25 167.3 14.7 158 164-355 2-160 (161)
16 3i8s_A Ferrous iron transport 99.8 1.8E-20 6.1E-25 184.5 14.6 165 371-548 3-167 (274)
17 2wji_A Ferrous iron transport 99.8 3.2E-20 1.1E-24 168.3 15.1 160 372-548 4-163 (165)
18 2lkc_A Translation initiation 99.8 2.1E-20 7.1E-25 171.2 13.5 156 369-548 6-169 (178)
19 3ec1_A YQEH GTPase; atnos1, at 99.8 4.4E-22 1.5E-26 203.9 2.1 235 268-538 67-319 (369)
20 3iby_A Ferrous iron transport 99.8 2.2E-20 7.6E-25 181.7 13.9 163 372-547 2-164 (256)
21 2qu8_A Putative nucleolar GTP- 99.8 1.2E-19 4E-24 173.8 18.0 170 370-548 28-203 (228)
22 1wf3_A GTP-binding protein; GT 99.8 3.6E-20 1.2E-24 184.4 14.0 164 163-357 7-173 (301)
23 2e87_A Hypothetical protein PH 99.8 1.8E-20 6E-25 191.8 11.6 232 302-548 87-334 (357)
24 3h2y_A GTPase family protein; 99.8 1.5E-21 5E-26 199.8 3.3 207 267-502 64-289 (368)
25 3a1s_A Iron(II) transport prot 99.8 1.1E-19 3.7E-24 177.1 16.1 160 371-547 5-164 (258)
26 3geh_A MNME, tRNA modification 99.8 8.5E-21 2.9E-25 199.1 8.4 159 370-548 223-382 (462)
27 1c1y_A RAS-related protein RAP 99.8 1.7E-19 5.8E-24 163.1 15.8 156 372-548 4-165 (167)
28 3iev_A GTP-binding protein ERA 99.8 1.3E-19 4.6E-24 181.3 16.6 166 163-358 10-183 (308)
29 3q72_A GTP-binding protein RAD 99.8 8.1E-20 2.8E-24 165.2 13.6 156 371-548 2-162 (166)
30 2il1_A RAB12; G-protein, GDP, 99.8 1.4E-19 4.9E-24 168.3 15.3 159 370-548 25-188 (192)
31 2g6b_A RAS-related protein RAB 99.8 1.8E-19 6E-24 165.3 14.9 158 370-548 9-172 (180)
32 4bas_A ADP-ribosylation factor 99.8 2.6E-19 8.9E-24 167.0 16.3 160 369-548 15-187 (199)
33 3b1v_A Ferrous iron uptake tra 99.8 1.2E-19 4.2E-24 177.8 14.7 160 371-548 3-162 (272)
34 4dhe_A Probable GTP-binding pr 99.8 1.9E-19 6.4E-24 171.4 15.6 173 159-358 25-212 (223)
35 2hjg_A GTP-binding protein ENG 99.8 4.7E-20 1.6E-24 193.7 12.3 160 372-548 4-163 (436)
36 3tkl_A RAS-related protein RAB 99.8 4.2E-19 1.5E-23 165.2 17.3 158 370-548 15-177 (196)
37 3tw8_B RAS-related protein RAB 99.8 1.9E-19 6.6E-24 164.9 14.6 157 370-548 8-169 (181)
38 3qq5_A Small GTP-binding prote 99.8 2.8E-20 9.5E-25 192.7 9.8 162 370-548 33-194 (423)
39 3reg_A RHO-like small GTPase; 99.8 1.9E-19 6.5E-24 167.6 14.3 160 370-548 22-186 (194)
40 2efe_B Small GTP-binding prote 99.8 4.7E-19 1.6E-23 162.6 16.6 157 371-548 12-173 (181)
41 2hup_A RAS-related protein RAB 99.8 2.5E-19 8.6E-24 168.0 15.0 158 370-548 28-191 (201)
42 1ega_A Protein (GTP-binding pr 99.8 8.9E-20 3E-24 181.9 12.4 164 371-547 8-172 (301)
43 2fg5_A RAB-22B, RAS-related pr 99.8 3.2E-19 1.1E-23 165.9 15.3 158 370-548 22-184 (192)
44 2nzj_A GTP-binding protein REM 99.8 2.6E-19 8.8E-24 163.3 14.3 158 371-548 4-167 (175)
45 2lkc_A Translation initiation 99.8 2.1E-19 7.2E-24 164.4 13.7 157 160-357 5-171 (178)
46 1z08_A RAS-related protein RAB 99.8 3.8E-19 1.3E-23 161.3 15.2 157 371-548 6-167 (170)
47 2gj8_A MNME, tRNA modification 99.8 8.7E-20 3E-24 166.7 10.7 161 163-356 4-165 (172)
48 2iwr_A Centaurin gamma 1; ANK 99.8 3.2E-19 1.1E-23 163.4 14.4 152 371-547 7-166 (178)
49 1r2q_A RAS-related protein RAB 99.8 5.9E-19 2E-23 159.8 15.8 157 371-548 6-167 (170)
50 1wms_A RAB-9, RAB9, RAS-relate 99.8 5.6E-19 1.9E-23 161.4 15.7 157 371-548 7-172 (177)
51 3kkq_A RAS-related protein M-R 99.8 8.1E-19 2.8E-23 161.5 16.6 156 370-548 17-180 (183)
52 1f6b_A SAR1; gtpases, N-termin 99.8 5E-19 1.7E-23 165.6 15.2 152 371-548 25-197 (198)
53 2fu5_C RAS-related protein RAB 99.8 1.2E-19 4E-24 167.1 10.8 156 371-548 8-169 (183)
54 4gzl_A RAS-related C3 botulinu 99.8 2.7E-19 9.1E-24 168.2 13.3 162 370-548 29-203 (204)
55 2hxs_A RAB-26, RAS-related pro 99.8 2.1E-19 7.3E-24 164.4 12.3 158 370-548 5-171 (178)
56 1upt_A ARL1, ADP-ribosylation 99.8 6.8E-19 2.3E-23 159.8 15.5 156 371-548 7-167 (171)
57 3k53_A Ferrous iron transport 99.8 3.7E-19 1.3E-23 174.9 14.8 161 371-548 3-164 (271)
58 3clv_A RAB5 protein, putative; 99.8 1.5E-18 5E-23 162.3 18.2 157 370-548 6-202 (208)
59 1ky3_A GTP-binding protein YPT 99.8 4.7E-19 1.6E-23 162.5 14.4 160 370-548 7-176 (182)
60 3iby_A Ferrous iron transport 99.8 1.6E-19 5.6E-24 175.6 11.8 158 164-354 2-164 (256)
61 1fzq_A ADP-ribosylation factor 99.8 6E-19 2.1E-23 162.5 15.0 157 370-548 15-176 (181)
62 1r8s_A ADP-ribosylation factor 99.8 1.1E-18 3.6E-23 157.5 16.2 154 373-548 2-160 (164)
63 2erx_A GTP-binding protein DI- 99.8 7E-19 2.4E-23 159.7 15.1 156 372-548 4-165 (172)
64 1vg8_A RAS-related protein RAB 99.8 8.4E-19 2.9E-23 164.7 16.1 158 370-548 7-173 (207)
65 1z0f_A RAB14, member RAS oncog 99.8 7.1E-19 2.4E-23 160.8 15.2 158 370-548 14-176 (179)
66 1z0j_A RAB-22, RAS-related pro 99.8 6.4E-19 2.2E-23 159.7 14.7 157 371-548 6-167 (170)
67 1puj_A YLQF, conserved hypothe 99.8 8.2E-19 2.8E-23 172.8 16.4 162 264-433 15-178 (282)
68 1u8z_A RAS-related protein RAL 99.8 9E-19 3.1E-23 158.2 15.5 156 371-548 4-165 (168)
69 2gco_A H9, RHO-related GTP-bin 99.8 5.6E-19 1.9E-23 165.5 14.5 161 371-547 25-197 (201)
70 3bc1_A RAS-related protein RAB 99.8 8.6E-19 2.9E-23 162.5 15.6 158 370-548 10-183 (195)
71 1z2a_A RAS-related protein RAB 99.8 3.8E-19 1.3E-23 160.9 12.8 157 371-548 5-165 (168)
72 1zj6_A ADP-ribosylation factor 99.8 1.6E-18 5.4E-23 160.3 17.2 153 370-548 15-176 (187)
73 2h17_A ADP-ribosylation factor 99.8 7.1E-19 2.4E-23 161.9 14.8 152 370-547 20-180 (181)
74 1g16_A RAS-related protein SEC 99.8 4.5E-19 1.5E-23 160.7 13.3 156 371-548 3-163 (170)
75 1m2o_B GTP-binding protein SAR 99.8 1.2E-18 4E-23 161.9 16.3 152 371-548 23-190 (190)
76 1mh1_A RAC1; GTP-binding, GTPa 99.8 5.2E-19 1.8E-23 162.9 13.9 162 371-548 5-178 (186)
77 1ek0_A Protein (GTP-binding pr 99.8 6.4E-19 2.2E-23 159.6 14.2 158 372-548 4-167 (170)
78 2y8e_A RAB-protein 6, GH09086P 99.8 5.6E-19 1.9E-23 161.5 13.8 157 371-548 14-175 (179)
79 3ihw_A Centg3; RAS, centaurin, 99.8 1.3E-18 4.5E-23 160.7 16.4 154 369-548 18-178 (184)
80 1xzp_A Probable tRNA modificat 99.8 2.9E-19 9.9E-24 188.3 13.4 160 163-356 243-404 (482)
81 2gf9_A RAS-related protein RAB 99.8 5.5E-19 1.9E-23 163.7 13.8 158 370-548 21-183 (189)
82 2bcg_Y Protein YP2, GTP-bindin 99.8 9.1E-19 3.1E-23 164.6 15.4 158 370-548 7-169 (206)
83 3gee_A MNME, tRNA modification 99.8 9.1E-19 3.1E-23 184.4 17.1 163 163-356 233-397 (476)
84 2wjg_A FEOB, ferrous iron tran 99.8 1.2E-18 4E-23 161.1 15.8 161 371-548 7-167 (188)
85 3cbq_A GTP-binding protein REM 99.8 9E-19 3.1E-23 163.4 15.1 159 370-548 22-186 (195)
86 2ew1_A RAS-related protein RAB 99.8 4.6E-19 1.6E-23 166.2 13.1 157 370-547 25-186 (201)
87 3q85_A GTP-binding protein REM 99.8 6.3E-19 2.2E-23 159.8 13.6 157 372-548 3-165 (169)
88 2q3h_A RAS homolog gene family 99.8 7E-19 2.4E-23 164.6 14.2 160 369-548 18-193 (201)
89 1zbd_A Rabphilin-3A; G protein 99.8 1.1E-18 3.8E-23 163.5 15.5 157 371-548 8-169 (203)
90 1kao_A RAP2A; GTP-binding prot 99.8 1E-18 3.4E-23 157.7 14.5 155 372-548 4-164 (167)
91 3llu_A RAS-related GTP-binding 99.8 1.3E-18 4.5E-23 162.3 15.8 168 369-548 18-195 (196)
92 1zd9_A ADP-ribosylation factor 99.8 1.4E-18 4.9E-23 160.9 15.8 158 370-548 21-183 (188)
93 2oil_A CATX-8, RAS-related pro 99.8 1.2E-18 4.2E-23 161.9 15.3 158 370-548 24-186 (193)
94 2atx_A Small GTP binding prote 99.8 9.3E-19 3.2E-23 162.8 14.5 158 370-547 17-190 (194)
95 2bme_A RAB4A, RAS-related prot 99.8 8.3E-19 2.8E-23 161.8 14.0 157 370-547 9-170 (186)
96 3j2k_7 ERF3, eukaryotic polype 99.8 1.2E-18 4.2E-23 182.5 17.0 158 370-542 16-217 (439)
97 3q3j_B RHO-related GTP-binding 99.8 5.5E-19 1.9E-23 167.4 13.0 158 370-548 26-201 (214)
98 2a9k_A RAS-related protein RAL 99.8 2.1E-18 7.2E-23 158.8 16.5 156 371-548 18-179 (187)
99 3t1o_A Gliding protein MGLA; G 99.8 7.6E-19 2.6E-23 163.4 13.6 158 370-548 13-190 (198)
100 1ksh_A ARF-like protein 2; sma 99.8 1.1E-18 3.6E-23 161.2 14.5 153 370-548 17-178 (186)
101 3cph_A RAS-related protein SEC 99.8 1.1E-18 3.9E-23 164.6 14.8 156 370-548 19-180 (213)
102 2a5j_A RAS-related protein RAB 99.8 6.4E-19 2.2E-23 163.6 12.9 157 370-547 20-181 (191)
103 2p5s_A RAS and EF-hand domain 99.8 2.3E-19 8E-24 167.8 9.8 158 370-548 27-195 (199)
104 2bov_A RAla, RAS-related prote 99.8 2.2E-18 7.7E-23 161.6 16.5 157 370-548 13-175 (206)
105 3t5g_A GTP-binding protein RHE 99.8 8.5E-19 2.9E-23 161.0 13.3 155 371-548 6-167 (181)
106 3tw8_B RAS-related protein RAB 99.8 1.9E-18 6.7E-23 158.2 15.6 158 162-358 8-172 (181)
107 2h57_A ADP-ribosylation factor 99.8 2.3E-18 7.7E-23 159.7 16.0 155 370-548 20-185 (190)
108 2qtf_A Protein HFLX, GTP-bindi 99.8 9.5E-19 3.3E-23 178.4 14.6 169 158-357 174-354 (364)
109 2fh5_B SR-beta, signal recogni 99.8 3.3E-18 1.1E-22 161.7 17.3 159 370-548 6-214 (214)
110 2b6h_A ADP-ribosylation factor 99.8 2.2E-18 7.6E-23 160.3 15.8 157 370-548 28-189 (192)
111 3pqc_A Probable GTP-binding pr 99.8 5.4E-18 1.8E-22 157.3 18.3 168 159-356 19-193 (195)
112 1svi_A GTP-binding protein YSX 99.8 3.4E-18 1.2E-22 159.0 16.9 167 160-356 20-194 (195)
113 2o52_A RAS-related protein RAB 99.8 8E-19 2.7E-23 164.4 12.7 158 370-548 24-186 (200)
114 3oes_A GTPase rhebl1; small GT 99.8 5.5E-19 1.9E-23 165.5 11.3 157 370-548 23-185 (201)
115 3bwd_D RAC-like GTP-binding pr 99.8 3.7E-19 1.3E-23 163.4 10.0 163 370-548 7-179 (182)
116 3c5c_A RAS-like protein 12; GD 99.8 1.1E-18 3.9E-23 161.5 13.3 157 369-548 19-184 (187)
117 4dcu_A GTP-binding protein ENG 99.8 5.2E-19 1.8E-23 186.8 12.4 161 371-548 23-183 (456)
118 2wji_A Ferrous iron transport 99.8 1.4E-18 4.8E-23 157.4 13.5 155 164-355 4-163 (165)
119 2fv8_A H6, RHO-related GTP-bin 99.8 1.3E-18 4.5E-23 163.8 13.7 161 371-547 25-197 (207)
120 2j1l_A RHO-related GTP-binding 99.8 1.4E-18 4.7E-23 164.6 13.8 163 370-548 33-207 (214)
121 2x77_A ADP-ribosylation factor 99.8 1.9E-18 6.4E-23 160.0 14.3 157 370-548 21-182 (189)
122 4djt_A GTP-binding nuclear pro 99.8 7.8E-19 2.7E-23 166.6 12.0 157 370-548 10-173 (218)
123 2fn4_A P23, RAS-related protei 99.8 2.4E-18 8.1E-23 157.6 14.8 156 370-548 8-170 (181)
124 3cpj_B GTP-binding protein YPT 99.8 1.3E-18 4.3E-23 166.0 13.4 157 370-548 12-174 (223)
125 4dsu_A GTPase KRAS, isoform 2B 99.8 4.3E-18 1.5E-22 157.1 16.6 154 371-548 4-164 (189)
126 2xtp_A GTPase IMAP family memb 99.8 1.5E-18 5.1E-23 169.5 14.1 167 370-548 21-206 (260)
127 2j0v_A RAC-like GTP-binding pr 99.8 8.3E-19 2.9E-23 165.6 11.9 160 370-548 8-178 (212)
128 2qu8_A Putative nucleolar GTP- 99.8 3.1E-18 1.1E-22 163.9 15.9 168 161-358 27-206 (228)
129 1z06_A RAS-related protein RAB 99.8 2.6E-18 8.7E-23 159.2 14.8 159 370-548 19-186 (189)
130 3lxw_A GTPase IMAP family memb 99.8 2.2E-18 7.6E-23 166.9 14.8 170 370-548 20-206 (247)
131 1m7b_A RND3/RHOE small GTP-bin 99.8 1.2E-18 3.9E-23 160.9 12.0 159 370-547 6-180 (184)
132 2f7s_A C25KG, RAS-related prot 99.8 1.1E-18 3.8E-23 165.4 12.2 158 370-548 24-197 (217)
133 1x3s_A RAS-related protein RAB 99.8 3.6E-18 1.2E-22 158.6 15.3 156 371-548 15-176 (195)
134 2g3y_A GTP-binding protein GEM 99.8 1.1E-18 3.8E-23 164.7 11.8 158 371-548 37-201 (211)
135 3dz8_A RAS-related protein RAB 99.8 5.9E-19 2E-23 163.9 9.7 159 369-548 21-184 (191)
136 1wb1_A Translation elongation 99.8 2.3E-18 8E-23 182.3 15.3 159 371-547 19-186 (482)
137 3i8s_A Ferrous iron transport 99.8 6.9E-19 2.4E-23 173.1 10.4 163 163-356 3-168 (274)
138 2yc2_C IFT27, small RAB-relate 99.8 6.3E-19 2.1E-23 165.5 9.3 159 370-548 19-190 (208)
139 3tr5_A RF-3, peptide chain rel 99.8 9.3E-19 3.2E-23 186.7 11.8 118 370-502 12-150 (528)
140 1moz_A ARL1, ADP-ribosylation 99.8 4.5E-18 1.5E-22 156.3 14.5 153 370-548 17-178 (183)
141 3a1s_A Iron(II) transport prot 99.8 5.4E-18 1.8E-22 165.1 15.6 157 163-356 5-166 (258)
142 2cxx_A Probable GTP-binding pr 99.8 6.6E-18 2.3E-22 156.1 15.4 164 372-548 2-182 (190)
143 2cjw_A GTP-binding protein GEM 99.8 2.7E-18 9.3E-23 159.7 12.7 158 371-548 6-170 (192)
144 3r7w_A Gtpase1, GTP-binding pr 99.8 4.5E-18 1.5E-22 170.2 15.1 167 371-547 3-178 (307)
145 3izy_P Translation initiation 99.8 8.2E-20 2.8E-24 193.9 2.6 163 370-548 3-166 (537)
146 2atv_A RERG, RAS-like estrogen 99.8 5.6E-18 1.9E-22 157.9 14.7 155 371-548 28-189 (196)
147 1x3s_A RAS-related protein RAB 99.8 2.4E-18 8.1E-23 159.9 12.1 156 163-357 15-178 (195)
148 2ce2_X GTPase HRAS; signaling 99.8 1.2E-17 4.2E-22 150.2 16.4 154 372-548 4-163 (166)
149 1gwn_A RHO-related GTP-binding 99.8 2.1E-18 7.2E-23 162.3 11.7 159 370-547 27-201 (205)
150 2c78_A Elongation factor TU-A; 99.8 3.9E-18 1.3E-22 177.3 14.8 161 370-547 10-209 (405)
151 2gf0_A GTP-binding protein DI- 99.8 7.6E-18 2.6E-22 157.0 15.2 156 370-548 7-169 (199)
152 1ega_A Protein (GTP-binding pr 99.8 4.3E-18 1.5E-22 169.6 14.2 162 163-357 8-175 (301)
153 1lnz_A SPO0B-associated GTP-bi 99.8 1.8E-18 6.3E-23 174.5 11.2 162 371-548 158-328 (342)
154 3qq5_A Small GTP-binding prote 99.8 5.3E-18 1.8E-22 175.6 14.9 164 160-358 31-197 (423)
155 3tkl_A RAS-related protein RAB 99.8 1.1E-17 3.9E-22 155.4 15.5 157 163-358 16-180 (196)
156 3cph_A RAS-related protein SEC 99.8 8.5E-18 2.9E-22 158.6 14.7 157 162-357 19-182 (213)
157 3gj0_A GTP-binding nuclear pro 99.8 2.3E-18 8E-23 163.8 10.9 157 369-548 13-173 (221)
158 3t5g_A GTP-binding protein RHE 99.8 2.4E-18 8.3E-23 158.0 10.5 155 163-357 6-169 (181)
159 2xtp_A GTPase IMAP family memb 99.8 3.6E-18 1.2E-22 166.8 12.1 169 162-358 21-209 (260)
160 3geh_A MNME, tRNA modification 99.7 4.8E-19 1.7E-23 185.8 6.2 161 163-357 224-384 (462)
161 3con_A GTPase NRAS; structural 99.7 1.4E-17 4.8E-22 154.2 15.3 155 371-548 21-181 (190)
162 1upt_A ARL1, ADP-ribosylation 99.7 9.4E-18 3.2E-22 152.2 13.6 152 163-356 7-168 (171)
163 2h57_A ADP-ribosylation factor 99.7 4.9E-18 1.7E-22 157.4 11.7 156 162-357 20-187 (190)
164 1d2e_A Elongation factor TU (E 99.7 1E-17 3.5E-22 173.6 15.3 159 372-547 4-192 (397)
165 2g6b_A RAS-related protein RAB 99.7 1.1E-17 3.9E-22 153.1 13.9 158 162-357 9-174 (180)
166 1zj6_A ADP-ribosylation factor 99.7 1.8E-17 6E-22 153.3 15.1 154 162-357 15-178 (187)
167 2elf_A Protein translation elo 99.7 1.9E-17 6.4E-22 169.3 16.8 147 373-548 23-178 (370)
168 3l0i_B RAS-related protein RAB 99.7 1.6E-19 5.4E-24 169.0 1.3 158 370-548 32-194 (199)
169 3t5d_A Septin-7; GTP-binding p 99.7 1.1E-17 3.6E-22 164.8 14.3 172 371-548 8-202 (274)
170 1lnz_A SPO0B-associated GTP-bi 99.7 8.3E-18 2.9E-22 169.7 13.7 163 163-358 158-331 (342)
171 3b1v_A Ferrous iron uptake tra 99.7 5.2E-18 1.8E-22 166.2 11.8 156 163-356 3-163 (272)
172 2h17_A ADP-ribosylation factor 99.7 1.5E-17 5E-22 153.0 13.9 151 161-353 19-179 (181)
173 2q3h_A RAS homolog gene family 99.7 1.5E-17 5.1E-22 155.5 13.8 157 162-358 19-196 (201)
174 1ksh_A ARF-like protein 2; sma 99.7 1.9E-17 6.4E-22 152.8 14.1 155 161-357 16-180 (186)
175 1r8s_A ADP-ribosylation factor 99.7 1.3E-17 4.6E-22 150.2 12.8 151 164-356 1-161 (164)
176 3q72_A GTP-binding protein RAD 99.7 8E-18 2.7E-22 152.0 11.1 154 163-357 2-164 (166)
177 1moz_A ARL1, ADP-ribosylation 99.7 2.2E-17 7.5E-22 151.7 14.1 154 162-357 17-180 (183)
178 4bas_A ADP-ribosylation factor 99.7 1.4E-17 4.8E-22 155.2 12.8 158 161-358 15-190 (199)
179 1z0j_A RAB-22, RAS-related pro 99.7 1.3E-17 4.4E-22 151.0 12.2 154 163-356 6-168 (170)
180 3o47_A ADP-ribosylation factor 99.7 1.9E-17 6.4E-22 167.1 14.6 156 371-548 165-325 (329)
181 3sjy_A Translation initiation 99.7 3.3E-17 1.1E-21 170.2 16.8 162 370-548 7-190 (403)
182 1f6b_A SAR1; gtpases, N-termin 99.7 9.7E-18 3.3E-22 156.8 11.5 150 163-354 25-196 (198)
183 3cb4_D GTP-binding protein LEP 99.7 2.7E-17 9.2E-22 177.3 16.5 159 371-548 4-180 (599)
184 3p26_A Elongation factor 1 alp 99.7 1.8E-17 6.3E-22 176.0 15.1 153 371-539 33-227 (483)
185 2wjg_A FEOB, ferrous iron tran 99.7 2.2E-17 7.4E-22 152.5 13.7 159 163-358 7-170 (188)
186 2aka_B Dynamin-1; fusion prote 99.7 1.3E-17 4.4E-22 166.2 12.8 171 370-546 25-249 (299)
187 2x77_A ADP-ribosylation factor 99.7 2E-17 6.8E-22 153.1 13.1 155 161-357 20-184 (189)
188 2y8e_A RAB-protein 6, GH09086P 99.7 2.2E-17 7.5E-22 150.9 13.2 155 163-356 14-176 (179)
189 2nzj_A GTP-binding protein REM 99.7 9.3E-18 3.2E-22 152.9 10.7 157 163-357 4-169 (175)
190 1z2a_A RAS-related protein RAB 99.7 2.6E-17 8.7E-22 148.8 13.5 155 163-356 5-166 (168)
191 1fzq_A ADP-ribosylation factor 99.7 1.9E-17 6.7E-22 152.3 12.8 153 162-356 15-177 (181)
192 3k53_A Ferrous iron transport 99.7 1.8E-17 6.2E-22 162.8 13.3 158 163-357 3-166 (271)
193 3q85_A GTP-binding protein REM 99.7 2.1E-17 7.2E-22 149.7 12.7 156 163-356 2-166 (169)
194 2il1_A RAB12; G-protein, GDP, 99.7 3.3E-17 1.1E-21 152.2 14.3 156 162-356 25-189 (192)
195 1zun_B Sulfate adenylate trans 99.7 3.4E-17 1.2E-21 171.7 16.0 154 371-540 24-214 (434)
196 3reg_A RHO-like small GTPase; 99.7 2.6E-17 8.9E-22 153.0 13.5 156 162-357 22-188 (194)
197 1s0u_A EIF-2-gamma, translatio 99.7 5.4E-17 1.9E-21 168.8 17.2 161 370-547 7-195 (408)
198 1kk1_A EIF2gamma; initiation o 99.7 5.2E-17 1.8E-21 169.1 17.1 160 371-547 10-197 (410)
199 2b6h_A ADP-ribosylation factor 99.7 3.2E-17 1.1E-21 152.4 13.9 155 160-356 26-190 (192)
200 3lvq_E ARF-GAP with SH3 domain 99.7 2.6E-17 8.8E-22 176.0 15.0 157 370-548 321-482 (497)
201 3clv_A RAB5 protein, putative; 99.7 5E-17 1.7E-21 151.8 15.2 156 162-357 6-204 (208)
202 2zej_A Dardarin, leucine-rich 99.7 2.2E-17 7.7E-22 152.3 12.5 160 372-548 3-176 (184)
203 4dkx_A RAS-related protein RAB 99.7 1.6E-17 5.4E-22 157.2 11.7 157 163-358 13-177 (216)
204 1g16_A RAS-related protein SEC 99.7 3.4E-17 1.1E-21 148.3 13.4 156 163-357 3-165 (170)
205 2e87_A Hypothetical protein PH 99.7 1.9E-16 6.5E-21 161.8 20.5 166 161-357 165-336 (357)
206 2qtf_A Protein HFLX, GTP-bindi 99.7 1.2E-16 4E-21 162.9 18.7 168 371-548 179-352 (364)
207 2ywe_A GTP-binding protein LEP 99.7 3.8E-17 1.3E-21 175.7 15.9 160 370-548 5-182 (600)
208 2bcg_Y Protein YP2, GTP-bindin 99.7 5E-17 1.7E-21 152.6 14.7 158 163-359 8-173 (206)
209 1m2o_B GTP-binding protein SAR 99.7 2.9E-17 1E-21 152.4 12.9 149 163-353 23-188 (190)
210 2atx_A Small GTP binding prote 99.7 3.6E-17 1.2E-21 152.0 13.5 153 163-355 18-191 (194)
211 1r2q_A RAS-related protein RAB 99.7 1.8E-17 6.2E-22 150.0 11.0 154 163-356 6-168 (170)
212 3th5_A RAS-related C3 botulinu 99.6 4.1E-19 1.4E-23 166.7 0.0 163 370-548 29-203 (204)
213 2j0v_A RAC-like GTP-binding pr 99.7 1.6E-17 5.3E-22 156.8 10.8 158 162-359 8-182 (212)
214 2fg5_A RAB-22B, RAS-related pr 99.7 2.2E-17 7.7E-22 153.3 11.5 157 163-357 23-186 (192)
215 2fn4_A P23, RAS-related protei 99.7 4.3E-17 1.5E-21 149.2 13.1 157 162-358 8-173 (181)
216 1u8z_A RAS-related protein RAL 99.7 5.5E-17 1.9E-21 146.3 13.5 154 163-356 4-166 (168)
217 3bc1_A RAS-related protein RAB 99.7 7.5E-17 2.6E-21 149.3 14.7 156 163-357 11-185 (195)
218 3gj0_A GTP-binding nuclear pro 99.7 1.4E-17 4.8E-22 158.4 9.9 160 161-358 13-176 (221)
219 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.9E-17 1E-21 151.1 11.8 155 163-357 5-180 (186)
220 2hxs_A RAB-26, RAS-related pro 99.7 2.6E-17 9E-22 150.4 11.3 156 163-357 6-173 (178)
221 1z0f_A RAB14, member RAS oncog 99.7 6.1E-17 2.1E-21 147.9 13.8 155 163-356 15-177 (179)
222 2gf9_A RAS-related protein RAB 99.7 8.9E-17 3E-21 148.7 15.0 156 163-357 22-185 (189)
223 1ek0_A Protein (GTP-binding pr 99.7 3.2E-17 1.1E-21 148.3 11.7 153 164-355 4-167 (170)
224 2wkq_A NPH1-1, RAS-related C3 99.7 4.7E-17 1.6E-21 164.4 14.2 163 369-548 153-328 (332)
225 3lxx_A GTPase IMAP family memb 99.7 5E-17 1.7E-21 156.6 13.7 172 370-548 28-212 (239)
226 2efe_B Small GTP-binding prote 99.7 6.6E-17 2.2E-21 148.1 13.8 156 163-357 12-175 (181)
227 1z08_A RAS-related protein RAB 99.7 3.8E-17 1.3E-21 148.0 12.1 155 163-356 6-168 (170)
228 1c1y_A RAS-related protein RAP 99.7 7.1E-17 2.4E-21 145.7 13.8 153 163-355 3-165 (167)
229 3izq_1 HBS1P, elongation facto 99.7 2.1E-17 7.2E-22 179.4 12.1 148 161-347 165-362 (611)
230 2fu5_C RAS-related protein RAB 99.7 1.9E-17 6.4E-22 152.3 10.0 156 163-357 8-171 (183)
231 3mca_A HBS1, elongation factor 99.7 5.3E-18 1.8E-22 183.6 7.3 163 369-547 175-394 (592)
232 2o52_A RAS-related protein RAB 99.7 5.9E-17 2E-21 151.6 13.4 156 163-357 25-188 (200)
233 3bwd_D RAC-like GTP-binding pr 99.7 1.6E-17 5.3E-22 152.5 9.2 154 162-355 7-179 (182)
234 4gzl_A RAS-related C3 botulinu 99.7 2.3E-17 7.7E-22 155.0 10.5 154 161-354 28-202 (204)
235 1vg8_A RAS-related protein RAB 99.7 5.6E-17 1.9E-21 152.2 13.2 158 162-358 7-176 (207)
236 2a5j_A RAS-related protein RAB 99.7 1.1E-16 3.9E-21 148.3 15.1 157 162-357 20-184 (191)
237 2hup_A RAS-related protein RAB 99.7 8E-17 2.7E-21 150.8 14.2 156 163-357 29-193 (201)
238 4dsu_A GTPase KRAS, isoform 2B 99.7 9.1E-17 3.1E-21 148.2 14.3 157 163-359 4-168 (189)
239 3izq_1 HBS1P, elongation facto 99.7 1.9E-17 6.6E-22 179.7 11.3 155 370-540 166-362 (611)
240 2bov_A RAla, RAS-related prote 99.7 6E-17 2.1E-21 151.8 13.3 156 162-357 13-177 (206)
241 1zd9_A ADP-ribosylation factor 99.7 4.8E-17 1.6E-21 150.6 12.2 154 162-356 21-184 (188)
242 1ky3_A GTP-binding protein YPT 99.7 4.4E-17 1.5E-21 149.3 11.8 157 162-357 7-178 (182)
243 2j1l_A RHO-related GTP-binding 99.7 5.2E-17 1.8E-21 153.7 12.7 155 163-357 34-209 (214)
244 3kkq_A RAS-related protein M-R 99.7 6.7E-17 2.3E-21 148.5 13.1 155 162-356 17-181 (183)
245 1g7s_A Translation initiation 99.7 5.7E-17 1.9E-21 175.0 14.2 162 370-547 4-215 (594)
246 3lxw_A GTPase IMAP family memb 99.7 3.2E-17 1.1E-21 158.7 11.2 171 162-359 20-210 (247)
247 1kao_A RAP2A; GTP-binding prot 99.7 7E-17 2.4E-21 145.5 12.7 153 164-356 4-165 (167)
248 2a9k_A RAS-related protein RAL 99.7 8.6E-17 3E-21 148.0 13.4 155 163-357 18-181 (187)
249 1zo1_I IF2, translation initia 99.7 2.1E-18 7.1E-23 181.7 2.7 159 370-546 3-163 (501)
250 2oil_A CATX-8, RAS-related pro 99.7 5.8E-17 2E-21 150.5 12.1 156 163-357 25-188 (193)
251 3izy_P Translation initiation 99.7 2.2E-18 7.5E-23 183.0 2.7 154 162-356 3-167 (537)
252 1f60_A Elongation factor EEF1A 99.7 1E-17 3.5E-22 176.5 7.7 153 371-539 7-201 (458)
253 3avx_A Elongation factor TS, e 99.7 1.1E-16 3.8E-21 179.7 16.3 162 369-547 294-483 (1289)
254 3j2k_7 ERF3, eukaryotic polype 99.7 1.3E-16 4.3E-21 167.3 15.7 149 161-349 15-217 (439)
255 2bme_A RAB4A, RAS-related prot 99.7 7.1E-17 2.4E-21 148.7 12.3 156 163-357 10-173 (186)
256 2ew1_A RAS-related protein RAB 99.7 1.1E-16 3.7E-21 150.1 13.6 156 163-357 26-189 (201)
257 4a9a_A Ribosome-interacting GT 99.7 6.7E-17 2.3E-21 164.1 13.1 125 158-315 67-194 (376)
258 3con_A GTPase NRAS; structural 99.7 1.3E-16 4.4E-21 147.6 13.9 156 163-358 21-184 (190)
259 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.3E-16 4.4E-21 145.6 13.7 155 163-356 7-173 (177)
260 3cbq_A GTP-binding protein REM 99.7 8.5E-17 2.9E-21 150.0 12.6 159 161-357 21-188 (195)
261 1z06_A RAS-related protein RAB 99.7 7.6E-17 2.6E-21 149.2 12.2 156 162-355 19-186 (189)
262 2p5s_A RAS and EF-hand domain 99.7 5.3E-17 1.8E-21 151.7 11.1 156 161-356 26-196 (199)
263 3t1o_A Gliding protein MGLA; G 99.7 4.9E-17 1.7E-21 151.1 10.7 157 163-357 14-192 (198)
264 3q3j_B RHO-related GTP-binding 99.7 7.1E-17 2.4E-21 152.8 12.0 156 162-357 26-203 (214)
265 2gco_A H9, RHO-related GTP-bin 99.7 9.6E-17 3.3E-21 150.2 12.7 153 163-355 25-198 (201)
266 1zbd_A Rabphilin-3A; G protein 99.7 7.4E-17 2.5E-21 151.0 11.9 156 163-357 8-171 (203)
267 1zo1_I IF2, translation initia 99.7 5.1E-18 1.8E-22 178.7 4.2 151 162-353 3-163 (501)
268 3vqt_A RF-3, peptide chain rel 99.7 2E-16 6.8E-21 169.6 16.5 121 369-504 29-170 (548)
269 3t5d_A Septin-7; GTP-binding p 99.7 1.5E-16 5.1E-21 156.5 14.2 166 163-355 8-202 (274)
270 4djt_A GTP-binding nuclear pro 99.7 1.2E-16 4.1E-21 151.4 12.9 159 162-359 10-177 (218)
271 3cpj_B GTP-binding protein YPT 99.7 1.1E-16 3.9E-21 152.3 12.8 157 163-358 13-177 (223)
272 3mca_A HBS1, elongation factor 99.7 4.8E-18 1.7E-22 183.9 3.6 157 160-356 174-396 (592)
273 1jny_A EF-1-alpha, elongation 99.7 5.5E-17 1.9E-21 170.1 11.5 154 371-539 6-202 (435)
274 2cxx_A Probable GTP-binding pr 99.7 7.5E-16 2.6E-20 142.2 17.8 165 164-358 2-185 (190)
275 3oes_A GTPase rhebl1; small GT 99.7 4E-17 1.4E-21 152.8 9.2 158 162-359 23-189 (201)
276 3dz8_A RAS-related protein RAB 99.7 4.3E-17 1.5E-21 151.2 9.3 158 162-357 22-186 (191)
277 2fv8_A H6, RHO-related GTP-bin 99.7 1.1E-16 3.6E-21 150.7 12.0 154 163-356 25-199 (207)
278 3llu_A RAS-related GTP-binding 99.7 2.5E-16 8.6E-21 146.7 14.3 159 159-355 16-195 (196)
279 1wb1_A Translation elongation 99.7 1.4E-16 4.6E-21 168.8 14.0 154 163-356 19-188 (482)
280 1jwy_B Dynamin A GTPase domain 99.7 1.8E-16 6.2E-21 159.2 14.1 174 369-548 22-260 (315)
281 2ce2_X GTPase HRAS; signaling 99.7 3.8E-16 1.3E-20 140.3 14.8 153 164-356 4-164 (166)
282 2f7s_A C25KG, RAS-related prot 99.7 3E-16 1E-20 148.6 14.5 155 162-357 24-199 (217)
283 2iwr_A Centaurin gamma 1; ANK 99.7 3.3E-16 1.1E-20 143.2 13.7 149 163-357 7-169 (178)
284 2erx_A GTP-binding protein DI- 99.7 6.4E-17 2.2E-21 146.6 8.9 154 163-356 3-166 (172)
285 3cnl_A YLQF, putative uncharac 99.7 4E-17 1.4E-21 158.9 7.6 143 264-433 13-157 (262)
286 3l0i_B RAS-related protein RAB 99.7 1.2E-17 4.1E-22 156.1 3.7 156 162-356 32-195 (199)
287 3o47_A ADP-ribosylation factor 99.7 5.4E-16 1.9E-20 156.4 15.9 153 162-356 164-326 (329)
288 2yc2_C IFT27, small RAB-relate 99.7 1E-16 3.5E-21 150.4 9.7 157 163-357 20-192 (208)
289 2fh5_B SR-beta, signal recogni 99.7 4.1E-16 1.4E-20 147.3 13.8 151 162-354 6-213 (214)
290 3tr5_A RF-3, peptide chain rel 99.7 6.4E-17 2.2E-21 172.5 8.9 115 163-317 13-148 (528)
291 3c5c_A RAS-like protein 12; GD 99.7 2.1E-16 7.1E-21 146.2 11.3 154 162-356 20-185 (187)
292 1g7s_A Translation initiation 99.7 9.2E-16 3.1E-20 165.5 17.7 155 162-357 4-218 (594)
293 3ihw_A Centg3; RAS, centaurin, 99.7 6.2E-16 2.1E-20 142.7 14.1 151 161-357 18-180 (184)
294 3lxx_A GTPase IMAP family memb 99.7 2.9E-16 9.9E-21 151.2 12.2 169 161-358 27-215 (239)
295 1r5b_A Eukaryotic peptide chai 99.7 1.2E-16 4.1E-21 168.8 9.9 156 371-541 43-243 (467)
296 3r7w_B Gtpase2, GTP-binding pr 99.7 4.3E-16 1.5E-20 154.4 13.3 160 373-547 1-171 (331)
297 3dpu_A RAB family protein; roc 99.7 3.3E-16 1.1E-20 168.7 13.5 183 341-548 13-206 (535)
298 2atv_A RERG, RAS-like estrogen 99.7 4.7E-16 1.6E-20 144.8 12.6 155 162-357 27-191 (196)
299 3c5h_A Glucocorticoid receptor 99.7 1.3E-16 4.6E-21 155.2 9.2 167 369-548 17-253 (255)
300 2j69_A Bacterial dynamin-like 99.7 1.5E-15 5.2E-20 167.5 18.6 168 370-548 68-323 (695)
301 2cjw_A GTP-binding protein GEM 99.7 4.3E-16 1.5E-20 144.8 12.0 158 163-357 6-172 (192)
302 1m7b_A RND3/RHOE small GTP-bin 99.7 3.9E-16 1.3E-20 143.8 11.3 153 163-355 7-181 (184)
303 2g3y_A GTP-binding protein GEM 99.7 1.9E-16 6.4E-21 149.4 9.2 158 163-357 37-203 (211)
304 2h5e_A Peptide chain release f 99.7 7.2E-16 2.5E-20 164.6 14.6 118 370-502 12-150 (529)
305 3r7w_A Gtpase1, GTP-binding pr 99.6 7.1E-16 2.4E-20 154.1 13.6 159 163-355 3-179 (307)
306 2gf0_A GTP-binding protein DI- 99.6 6.1E-16 2.1E-20 144.0 12.3 156 162-357 7-171 (199)
307 1gwn_A RHO-related GTP-binding 99.6 4.4E-16 1.5E-20 146.3 10.8 153 163-355 28-202 (205)
308 1kk1_A EIF2gamma; initiation o 99.6 1E-15 3.6E-20 159.3 14.4 156 163-357 10-200 (410)
309 3sjy_A Translation initiation 99.6 1.1E-15 3.7E-20 158.8 13.5 158 161-357 6-192 (403)
310 1pui_A ENGB, probable GTP-bind 99.6 2.4E-15 8.4E-20 141.4 14.8 170 369-548 24-197 (210)
311 3cb4_D GTP-binding protein LEP 99.6 1.1E-15 3.9E-20 164.6 14.1 156 163-358 4-183 (599)
312 3th5_A RAS-related C3 botulinu 99.4 1.8E-17 6.1E-22 155.5 0.0 154 161-354 28-202 (204)
313 3lvq_E ARF-GAP with SH3 domain 99.6 9.7E-16 3.3E-20 163.8 13.1 155 163-359 322-486 (497)
314 2zej_A Dardarin, leucine-rich 99.6 1.1E-15 3.7E-20 140.9 11.5 157 163-357 2-178 (184)
315 1s0u_A EIF-2-gamma, translatio 99.6 2.1E-15 7.3E-20 156.8 15.0 157 162-357 7-198 (408)
316 2elf_A Protein translation elo 99.6 1.6E-15 5.5E-20 155.0 13.6 143 165-358 23-181 (370)
317 2ywe_A GTP-binding protein LEP 99.6 1.5E-15 5.1E-20 163.4 13.8 156 163-358 6-185 (600)
318 2f9l_A RAB11B, member RAS onco 99.6 2.9E-15 1E-19 139.8 14.1 156 371-548 5-166 (199)
319 3j25_A Tetracycline resistance 99.6 3.7E-16 1.3E-20 170.9 8.9 162 371-547 2-236 (638)
320 1dar_A EF-G, elongation factor 99.6 4.4E-15 1.5E-19 163.8 17.2 117 370-501 11-144 (691)
321 1zun_B Sulfate adenylate trans 99.6 2.4E-15 8.1E-20 157.6 14.4 146 163-347 24-214 (434)
322 2xex_A Elongation factor G; GT 99.6 4.5E-15 1.5E-19 163.7 16.9 117 370-501 9-142 (693)
323 3p26_A Elongation factor 1 alp 99.6 1.6E-15 5.3E-20 161.2 12.7 145 163-346 33-227 (483)
324 2wkq_A NPH1-1, RAS-related C3 99.6 1.2E-15 4.2E-20 154.0 11.4 154 163-356 155-329 (332)
325 2rdo_7 EF-G, elongation factor 99.6 9.7E-15 3.3E-19 161.2 19.4 117 370-501 9-149 (704)
326 3def_A T7I23.11 protein; chlor 99.6 4.9E-15 1.7E-19 144.7 14.7 124 370-501 35-166 (262)
327 2dy1_A Elongation factor G; tr 99.6 8.6E-15 3E-19 160.9 17.9 115 370-499 8-139 (665)
328 2x2e_A Dynamin-1; nitration, h 99.6 1.3E-15 4.4E-20 155.4 10.3 172 369-546 29-254 (353)
329 2aka_B Dynamin-1; fusion prote 99.6 8.8E-16 3E-20 152.9 8.7 166 161-355 24-251 (299)
330 3zvr_A Dynamin-1; hydrolase, D 99.6 3.7E-15 1.3E-19 163.2 13.3 204 335-546 17-274 (772)
331 1nrj_B SR-beta, signal recogni 99.6 1.4E-15 4.9E-20 144.0 8.7 115 370-503 11-137 (218)
332 2c78_A Elongation factor TU-A; 99.6 1.4E-15 4.8E-20 158.1 9.5 154 163-356 11-211 (405)
333 1d2e_A Elongation factor TU (E 99.6 2E-15 6.9E-20 156.3 10.4 155 163-357 3-195 (397)
334 4a9a_A Ribosome-interacting GT 99.6 2.2E-14 7.6E-19 145.6 16.9 117 371-498 72-194 (376)
335 1wxq_A GTP-binding protein; st 99.6 1.5E-15 5.2E-20 156.4 8.4 90 373-470 2-114 (397)
336 1oix_A RAS-related protein RAB 99.6 1.6E-14 5.4E-19 134.0 14.1 156 371-548 29-190 (191)
337 1jwy_B Dynamin A GTPase domain 99.6 5E-15 1.7E-19 148.6 11.3 170 161-357 22-262 (315)
338 1h65_A Chloroplast outer envel 99.6 4.2E-14 1.4E-18 138.7 16.1 125 370-502 38-170 (270)
339 2f9l_A RAB11B, member RAS onco 99.6 3.6E-14 1.2E-18 132.4 14.6 156 163-357 5-168 (199)
340 1wxq_A GTP-binding protein; st 99.6 2.5E-15 8.6E-20 154.8 7.3 90 164-285 1-114 (397)
341 3dpu_A RAB family protein; roc 99.6 1.2E-14 4.2E-19 156.5 12.4 156 162-357 40-208 (535)
342 1f60_A Elongation factor EEF1A 99.6 3E-15 1E-19 157.7 7.1 145 163-347 7-202 (458)
343 3t34_A Dynamin-related protein 99.5 1.4E-14 4.8E-19 148.2 11.8 167 370-543 33-254 (360)
344 2h5e_A Peptide chain release f 99.5 2.1E-14 7.2E-19 153.2 13.6 115 163-317 13-148 (529)
345 3vqt_A RF-3, peptide chain rel 99.5 1.7E-14 5.8E-19 154.6 12.7 114 163-316 31-165 (548)
346 1h65_A Chloroplast outer envel 99.5 2.2E-14 7.4E-19 140.7 12.4 126 163-319 39-170 (270)
347 3def_A T7I23.11 protein; chlor 99.5 2E-14 6.7E-19 140.4 12.0 124 163-317 36-165 (262)
348 2j69_A Bacterial dynamin-like 99.5 6.3E-15 2.2E-19 162.6 9.4 158 162-356 68-324 (695)
349 1r5b_A Eukaryotic peptide chai 99.5 4.5E-15 1.5E-19 156.7 7.6 146 163-348 43-243 (467)
350 4fn5_A EF-G 1, elongation fact 99.5 5.5E-14 1.9E-18 155.8 16.1 119 370-502 12-153 (709)
351 3avx_A Elongation factor TS, e 99.5 1.9E-14 6.5E-19 161.7 12.0 155 162-356 295-485 (1289)
352 1udx_A The GTP-binding protein 99.5 7.9E-14 2.7E-18 143.9 15.8 162 370-548 156-323 (416)
353 1jny_A EF-1-alpha, elongation 99.5 1.1E-14 3.8E-19 152.5 9.6 146 163-347 6-203 (435)
354 2www_A Methylmalonic aciduria 99.5 1.5E-14 5.1E-19 146.9 10.2 151 160-357 71-279 (349)
355 2xex_A Elongation factor G; GT 99.5 2.7E-14 9.4E-19 157.5 12.2 117 161-317 8-141 (693)
356 2qag_A Septin-2, protein NEDD5 99.5 2.9E-14 9.8E-19 145.5 11.1 169 371-546 37-229 (361)
357 1jal_A YCHF protein; nucleotid 99.5 8.1E-14 2.8E-18 140.7 13.7 91 371-469 2-108 (363)
358 1pui_A ENGB, probable GTP-bind 99.5 1.7E-13 5.8E-18 128.7 14.8 167 161-357 24-199 (210)
359 1dar_A EF-G, elongation factor 99.5 5.7E-14 2E-18 154.9 13.2 116 162-317 11-143 (691)
360 3c5h_A Glucocorticoid receptor 99.5 3.4E-14 1.2E-18 138.1 10.1 84 272-355 162-253 (255)
361 1udx_A The GTP-binding protein 99.5 2.2E-13 7.7E-18 140.5 16.4 163 163-358 157-326 (416)
362 2rdo_7 EF-G, elongation factor 99.5 1.1E-13 3.8E-18 152.8 14.8 117 161-317 8-148 (704)
363 1oix_A RAS-related protein RAB 99.5 2.5E-13 8.4E-18 125.9 14.5 154 163-355 29-190 (191)
364 2www_A Methylmalonic aciduria 99.5 5.4E-14 1.9E-18 142.7 10.8 155 370-548 73-277 (349)
365 1u0l_A Probable GTPase ENGC; p 99.5 2.3E-13 8E-18 135.3 14.5 143 268-434 80-235 (301)
366 3zvr_A Dynamin-1; hydrolase, D 99.5 1.3E-13 4.3E-18 151.1 13.4 164 162-353 50-274 (772)
367 2x2e_A Dynamin-1; nitration, h 99.5 6.2E-14 2.1E-18 142.9 10.3 165 162-353 30-254 (353)
368 3p32_A Probable GTPase RV1496/ 99.5 5.9E-14 2E-18 143.1 8.5 155 370-548 78-282 (355)
369 3j25_A Tetracycline resistance 99.5 3.9E-14 1.3E-18 154.9 7.4 114 163-316 2-132 (638)
370 2ged_A SR-beta, signal recogni 99.5 4.3E-13 1.5E-17 124.0 13.3 141 341-504 23-174 (193)
371 1nrj_B SR-beta, signal recogni 99.5 9.1E-14 3.1E-18 131.4 8.8 142 161-343 10-170 (218)
372 3p32_A Probable GTPase RV1496/ 99.5 1.5E-13 5.1E-18 140.1 10.8 149 162-357 78-284 (355)
373 1n0u_A EF-2, elongation factor 99.4 6.4E-14 2.2E-18 157.6 7.7 153 370-536 18-219 (842)
374 2p67_A LAO/AO transport system 99.4 1.9E-13 6.4E-18 138.5 10.4 155 369-547 54-258 (341)
375 3r7w_B Gtpase2, GTP-binding pr 99.4 1.8E-13 6.3E-18 135.6 10.0 154 165-355 1-172 (331)
376 2yv5_A YJEQ protein; hydrolase 99.4 6.1E-13 2.1E-17 132.3 13.4 142 268-434 75-230 (302)
377 2qag_A Septin-2, protein NEDD5 99.4 2.5E-13 8.6E-18 138.5 10.8 166 163-356 37-232 (361)
378 2dy1_A Elongation factor G; tr 99.4 4.6E-13 1.6E-17 147.1 13.5 115 162-316 8-139 (665)
379 3t34_A Dynamin-related protein 99.4 3.9E-13 1.3E-17 137.4 10.7 164 161-351 32-255 (360)
380 2dby_A GTP-binding protein; GD 99.4 6.3E-13 2.2E-17 135.0 11.8 90 372-469 2-111 (368)
381 1yrb_A ATP(GTP)binding protein 99.4 3.2E-13 1.1E-17 131.5 8.9 170 370-548 13-255 (262)
382 2p67_A LAO/AO transport system 99.4 6.9E-13 2.3E-17 134.4 9.9 149 161-356 54-260 (341)
383 2wsm_A Hydrogenase expression/ 99.4 2.2E-13 7.5E-18 129.1 5.5 154 370-548 29-212 (221)
384 1jal_A YCHF protein; nucleotid 99.4 3.1E-12 1.1E-16 129.1 13.3 89 164-284 3-108 (363)
385 1t9h_A YLOQ, probable GTPase E 99.4 6.6E-13 2.3E-17 131.3 7.3 142 269-434 83-238 (307)
386 2qag_C Septin-7; cell cycle, c 99.3 2.9E-12 9.8E-17 132.3 11.5 170 371-546 31-223 (418)
387 2ged_A SR-beta, signal recogni 99.3 2.9E-12 9.8E-17 118.5 10.2 117 161-318 46-171 (193)
388 2qpt_A EH domain-containing pr 99.3 3.1E-12 1.1E-16 137.3 11.6 127 370-501 64-233 (550)
389 4fn5_A EF-G 1, elongation fact 99.3 4.7E-12 1.6E-16 140.4 12.4 115 162-316 12-150 (709)
390 2dby_A GTP-binding protein; GD 99.3 4.4E-12 1.5E-16 128.9 11.2 89 164-284 2-111 (368)
391 2qnr_A Septin-2, protein NEDD5 99.3 4.8E-12 1.6E-16 125.8 10.9 171 371-547 18-211 (301)
392 2wsm_A Hydrogenase expression/ 99.3 2.5E-13 8.6E-18 128.7 1.4 148 163-357 30-214 (221)
393 2qpt_A EH domain-containing pr 99.3 5.5E-12 1.9E-16 135.3 10.5 130 161-319 63-234 (550)
394 1yrb_A ATP(GTP)binding protein 99.3 6.6E-12 2.2E-16 122.2 9.8 161 162-357 13-257 (262)
395 1n0u_A EF-2, elongation factor 99.3 2.7E-12 9.1E-17 144.5 7.7 114 163-316 19-163 (842)
396 2qm8_A GTPase/ATPase; G protei 99.2 3E-11 1E-15 121.9 12.0 156 369-548 53-259 (337)
397 2qm8_A GTPase/ATPase; G protei 99.2 6.4E-12 2.2E-16 126.8 6.0 148 162-356 54-260 (337)
398 2qnr_A Septin-2, protein NEDD5 99.2 5.5E-11 1.9E-15 118.0 12.7 170 163-356 18-213 (301)
399 2rcn_A Probable GTPase ENGC; Y 99.2 2.4E-11 8.2E-16 122.4 9.8 141 270-434 128-282 (358)
400 2qag_C Septin-7; cell cycle, c 99.2 7E-11 2.4E-15 121.9 12.2 163 163-353 31-223 (418)
401 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.9E-10 6.5E-15 117.5 12.7 94 369-469 18-127 (392)
402 3ec1_A YQEH GTPase; atnos1, at 99.1 1.8E-11 6.3E-16 125.0 2.6 146 164-345 163-319 (369)
403 2ohf_A Protein OLA1, GTP-bindi 99.0 3.2E-10 1.1E-14 115.5 9.0 93 369-469 20-128 (396)
404 2hf9_A Probable hydrogenase ni 99.0 2.7E-10 9.3E-15 108.0 7.7 82 458-548 140-222 (226)
405 2hf9_A Probable hydrogenase ni 99.0 2.2E-10 7.7E-15 108.6 6.6 54 303-356 164-223 (226)
406 2ohf_A Protein OLA1, GTP-bindi 99.0 2.6E-10 9E-15 116.1 6.7 90 163-284 22-128 (396)
407 1cip_A Protein (guanine nucleo 99.0 3.3E-10 1.1E-14 114.5 6.9 116 418-547 191-341 (353)
408 3h2y_A GTPase family protein; 99.0 2.6E-11 8.8E-16 123.8 -1.2 142 164-340 161-313 (368)
409 1u0l_A Probable GTPase ENGC; p 99.0 1.3E-09 4.4E-14 108.2 10.9 105 420-546 63-169 (301)
410 2j37_W Signal recognition part 98.9 2.4E-09 8.2E-14 112.8 9.6 161 370-547 100-310 (504)
411 2j37_W Signal recognition part 98.9 5.1E-09 1.7E-13 110.3 12.0 156 162-354 100-310 (504)
412 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.1E-09 1.1E-13 108.5 9.5 91 163-284 20-127 (392)
413 1zcb_A G alpha I/13; GTP-bindi 98.9 1.4E-09 4.7E-14 110.4 6.4 116 418-547 199-350 (362)
414 2qag_B Septin-6, protein NEDD5 98.9 6.9E-09 2.4E-13 106.6 11.5 153 373-531 44-217 (427)
415 1azs_C GS-alpha; complex (lyas 98.9 1.9E-09 6.5E-14 110.3 6.8 116 418-547 215-382 (402)
416 2qag_B Septin-6, protein NEDD5 98.9 6.2E-09 2.1E-13 106.9 10.4 153 163-338 42-217 (427)
417 2xtz_A Guanine nucleotide-bind 98.9 1.7E-09 5.8E-14 109.3 6.1 115 419-547 182-342 (354)
418 1tq4_A IIGP1, interferon-induc 98.8 1.1E-07 3.8E-12 97.7 18.7 163 371-548 69-251 (413)
419 3sop_A Neuronal-specific septi 98.8 3.3E-08 1.1E-12 96.2 12.6 146 372-522 3-173 (270)
420 3ohm_A Guanine nucleotide-bind 98.8 7.1E-09 2.4E-13 103.2 7.4 116 418-547 165-315 (327)
421 1tq4_A IIGP1, interferon-induc 98.7 6.7E-08 2.3E-12 99.3 13.5 158 163-359 69-255 (413)
422 4fid_A G protein alpha subunit 98.7 7.7E-09 2.6E-13 103.4 5.8 116 418-547 159-325 (340)
423 3sop_A Neuronal-specific septi 98.7 7.5E-08 2.6E-12 93.7 11.6 133 164-319 3-156 (270)
424 1f5n_A Interferon-induced guan 98.6 4E-08 1.4E-12 105.2 8.3 62 162-225 37-105 (592)
425 3dm5_A SRP54, signal recogniti 98.6 4.1E-07 1.4E-11 93.9 14.0 147 163-347 100-281 (443)
426 1puj_A YLQF, conserved hypothe 98.6 8.9E-08 3E-12 93.8 8.2 91 448-548 14-104 (282)
427 2yv5_A YJEQ protein; hydrolase 98.6 7.5E-08 2.6E-12 95.4 7.1 88 454-546 76-165 (302)
428 3dm5_A SRP54, signal recogniti 98.5 2.1E-06 7.2E-11 88.6 17.6 149 370-540 99-281 (443)
429 2v3c_C SRP54, signal recogniti 98.5 9.8E-08 3.3E-12 99.0 6.7 23 163-185 99-121 (432)
430 2v3c_C SRP54, signal recogniti 98.5 2.1E-07 7.3E-12 96.4 8.0 117 371-500 99-252 (432)
431 1cip_A Protein (guanine nucleo 98.5 1.9E-07 6.5E-12 94.3 7.4 121 198-356 180-343 (353)
432 3cnl_A YLQF, putative uncharac 98.4 9.2E-08 3.1E-12 92.7 4.1 58 164-224 100-157 (262)
433 1f5n_A Interferon-induced guan 98.4 4.8E-07 1.7E-11 96.8 9.7 104 370-483 37-146 (592)
434 1zcb_A G alpha I/13; GTP-bindi 98.4 5.1E-07 1.7E-11 91.5 8.6 121 198-356 188-352 (362)
435 3kl4_A SRP54, signal recogniti 98.4 1.4E-06 4.8E-11 89.9 11.7 149 163-347 97-280 (433)
436 3l82_B F-box only protein 4; T 98.3 2.9E-06 9.8E-11 77.7 9.1 96 448-548 115-221 (227)
437 1j8m_F SRP54, signal recogniti 98.1 7.5E-06 2.6E-10 80.6 10.2 148 163-347 98-281 (297)
438 1azs_C GS-alpha; complex (lyas 98.1 2.9E-06 1E-10 86.7 7.3 121 198-356 204-384 (402)
439 3kl4_A SRP54, signal recogniti 98.1 1.9E-05 6.5E-10 81.4 13.4 149 370-538 96-278 (433)
440 3ohm_A Guanine nucleotide-bind 98.1 4.8E-06 1.6E-10 82.8 7.6 122 198-357 154-318 (327)
441 2xtz_A Guanine nucleotide-bind 98.1 4.5E-06 1.5E-10 84.2 7.3 109 210-356 182-344 (354)
442 3szr_A Interferon-induced GTP- 98.0 1.9E-05 6.5E-10 85.7 11.7 27 161-187 43-69 (608)
443 3l82_B F-box only protein 4; T 98.0 5.2E-05 1.8E-09 69.5 12.0 95 262-356 115-222 (227)
444 1j8m_F SRP54, signal recogniti 98.0 8.8E-05 3E-09 72.9 14.3 147 371-540 98-281 (297)
445 3l2o_B F-box only protein 4; s 98.0 1.6E-05 5.4E-10 76.5 8.0 96 448-548 200-306 (312)
446 3szr_A Interferon-induced GTP- 97.9 8E-05 2.7E-09 80.8 13.6 80 420-501 147-229 (608)
447 4fid_A G protein alpha subunit 97.9 3E-05 1E-09 77.4 8.5 122 198-357 148-328 (340)
448 3e70_C DPA, signal recognition 97.8 1.4E-05 4.8E-10 79.7 5.6 70 272-347 241-310 (328)
449 2xxa_A Signal recognition part 97.7 0.00014 4.6E-09 75.4 10.7 22 163-184 100-121 (433)
450 3q5d_A Atlastin-1; G protein, 97.6 3.2E-05 1.1E-09 80.0 4.5 61 162-223 66-152 (447)
451 1t9h_A YLOQ, probable GTPase E 97.6 2.1E-05 7.1E-10 77.5 2.8 87 454-544 83-171 (307)
452 2xxa_A Signal recognition part 97.6 0.0013 4.5E-08 68.0 15.7 120 370-500 99-254 (433)
453 1rj9_A FTSY, signal recognitio 97.5 0.00098 3.3E-08 65.6 12.9 23 163-185 102-124 (304)
454 2yhs_A FTSY, cell division pro 97.4 0.00042 1.4E-08 72.2 10.1 23 163-185 293-315 (503)
455 1vma_A Cell division protein F 97.4 0.00031 1.1E-08 69.2 8.6 23 163-185 104-126 (306)
456 2ffh_A Protein (FFH); SRP54, s 97.4 0.00037 1.3E-08 71.7 8.8 23 163-185 98-120 (425)
457 3e70_C DPA, signal recognition 97.3 0.00053 1.8E-08 68.2 9.2 150 369-540 127-310 (328)
458 3fvq_A Fe(3+) IONS import ATP- 97.3 0.0012 4E-08 66.4 11.5 114 163-292 30-172 (359)
459 2rcn_A Probable GTPase ENGC; Y 97.3 0.00064 2.2E-08 68.2 9.2 84 455-544 128-213 (358)
460 3q5d_A Atlastin-1; G protein, 97.3 0.0004 1.4E-08 71.8 7.7 103 370-484 66-195 (447)
461 2px0_A Flagellar biosynthesis 97.3 0.0012 4.2E-08 64.7 10.5 22 163-184 105-126 (296)
462 1zu4_A FTSY; GTPase, signal re 97.2 0.0018 6E-08 64.2 11.6 23 163-185 105-127 (320)
463 3gfo_A Cobalt import ATP-bindi 97.2 0.0003 1E-08 68.2 5.7 24 164-187 35-58 (275)
464 1g29_1 MALK, maltose transport 97.2 0.0013 4.4E-08 66.6 10.5 24 164-187 30-53 (372)
465 3rlf_A Maltose/maltodextrin im 97.2 0.00082 2.8E-08 68.0 9.0 113 164-292 30-167 (381)
466 1v43_A Sugar-binding transport 97.2 0.0016 5.6E-08 65.7 10.5 25 163-187 37-61 (372)
467 3tui_C Methionine import ATP-b 97.2 0.0013 4.3E-08 66.2 9.6 25 163-187 54-78 (366)
468 1z47_A CYSA, putative ABC-tran 97.1 0.0013 4.6E-08 65.9 9.2 24 164-187 42-65 (355)
469 2yhs_A FTSY, cell division pro 97.1 0.0055 1.9E-07 63.8 14.0 122 369-499 291-451 (503)
470 2yyz_A Sugar ABC transporter, 97.1 0.0018 6.1E-08 65.1 9.6 25 163-187 29-53 (359)
471 3l2o_B F-box only protein 4; s 97.0 0.00078 2.7E-08 64.8 6.3 94 264-357 202-308 (312)
472 2og2_A Putative signal recogni 97.0 0.006 2.1E-07 61.2 12.4 23 164-186 158-180 (359)
473 2it1_A 362AA long hypothetical 96.9 0.0017 5.8E-08 65.4 8.3 25 163-187 29-53 (362)
474 1oxx_K GLCV, glucose, ABC tran 96.9 0.0015 5.1E-08 65.6 7.8 24 164-187 32-55 (353)
475 2olj_A Amino acid ABC transpor 96.9 0.0037 1.3E-07 60.1 10.2 25 163-187 50-74 (263)
476 2pcj_A ABC transporter, lipopr 96.9 0.0027 9.2E-08 59.5 8.9 24 164-187 31-54 (224)
477 1vma_A Cell division protein F 96.9 0.0025 8.4E-08 62.7 8.7 24 370-393 103-126 (306)
478 1vpl_A ABC transporter, ATP-bi 96.9 0.0038 1.3E-07 59.7 9.8 25 163-187 41-65 (256)
479 4dzz_A Plasmid partitioning pr 96.9 0.006 2.1E-07 55.8 10.9 49 267-316 92-143 (206)
480 3ney_A 55 kDa erythrocyte memb 96.8 0.00032 1.1E-08 64.3 1.7 59 163-223 19-78 (197)
481 3nh6_A ATP-binding cassette SU 96.7 0.0033 1.1E-07 61.7 8.4 24 163-186 80-103 (306)
482 1rj9_A FTSY, signal recognitio 96.7 0.0033 1.1E-07 61.8 8.2 122 370-500 101-261 (304)
483 1ls1_A Signal recognition part 96.7 0.0025 8.5E-08 62.5 7.4 23 163-185 98-120 (295)
484 1g6h_A High-affinity branched- 96.7 0.012 3.9E-07 56.4 11.6 25 163-187 33-57 (257)
485 1ji0_A ABC transporter; ATP bi 96.7 0.0046 1.6E-07 58.5 8.7 24 164-187 33-56 (240)
486 3b9q_A Chloroplast SRP recepto 96.6 0.0028 9.5E-08 62.3 6.9 23 164-186 101-123 (302)
487 4g1u_C Hemin import ATP-bindin 96.5 0.0072 2.5E-07 58.1 8.7 25 163-187 37-61 (266)
488 3d31_A Sulfate/molybdate ABC t 96.5 0.0054 1.9E-07 61.4 8.0 24 164-187 27-50 (348)
489 1zu4_A FTSY; GTPase, signal re 96.4 0.011 3.8E-07 58.5 9.8 25 369-393 103-127 (320)
490 2ffh_A Protein (FFH); SRP54, s 96.4 0.015 5.1E-07 59.7 10.8 73 418-500 179-251 (425)
491 2px0_A Flagellar biosynthesis 96.2 0.0032 1.1E-07 61.7 4.6 24 370-393 104-127 (296)
492 3b5x_A Lipid A export ATP-bind 96.0 0.027 9.1E-07 60.7 10.9 23 164-186 370-392 (582)
493 3cwq_A Para family chromosome 96.0 0.013 4.4E-07 54.1 7.2 49 268-317 86-134 (209)
494 4f4c_A Multidrug resistance pr 95.9 0.014 4.7E-07 69.0 8.8 37 163-211 444-480 (1321)
495 3qf4_B Uncharacterized ABC tra 95.9 0.018 6.1E-07 62.2 9.0 25 163-187 381-405 (598)
496 4a82_A Cystic fibrosis transme 95.9 0.022 7.4E-07 61.3 9.3 25 163-187 367-391 (578)
497 4dzz_A Plasmid partitioning pr 95.8 0.11 3.9E-06 47.0 12.9 64 419-499 75-143 (206)
498 3qf4_A ABC transporter, ATP-bi 95.8 0.023 8E-07 61.2 9.1 24 163-186 369-392 (587)
499 3tif_A Uncharacterized ABC tra 95.7 0.0075 2.6E-07 56.9 4.4 25 163-187 31-55 (235)
500 3b60_A Lipid A export ATP-bind 95.6 0.03 1E-06 60.3 9.3 24 164-187 370-393 (582)
No 1
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=8.3e-47 Score=397.94 Aligned_cols=350 Identities=38% Similarity=0.627 Sum_probs=254.3
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
|+|+|+|.+|||||||+|+|++.....+.+.+|+|++...+.+.++|..+.+|||||+..... .
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~-------------- 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ--D-------------- 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGG--G--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc--c--------------
Confidence 689999999999999999999988777899999999999999999999999999999865211 0
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (549)
.+...+..++..++..+|++|+|+|++.+++..+..+..++++. ++|+++|+||+|+........
T Consensus 66 -------------~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~~~~~~ 130 (439)
T 1mky_A 66 -------------IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFEREV 130 (439)
T ss_dssp -------------CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHT
T ss_pred -------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccccHHHH
Confidence 11223445677889999999999999998888887888888765 899999999999865411122
Q ss_pred -HHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecC
Q 008909 324 -SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (549)
Q Consensus 324 -~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~ 401 (549)
..++..++ +++++||++|.|+.+|++.+...++................+++++|.+|+|||||+|++++.....+++
T Consensus 131 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~ 210 (439)
T 1mky_A 131 KPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP 210 (439)
T ss_dssp HHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECC
T ss_pred HHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCC
Confidence 34455676 7899999999999999999988876432110000012345799999999999999999999988778999
Q ss_pred CCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHH
Q 008909 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (549)
Q Consensus 402 ~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~ 481 (549)
.+|+|++.....+.. +|..+.+|||||+.++..+.. ...+.+...+...+++.+|++++|+|++++.+.++..+...
T Consensus 211 ~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~--~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~ 287 (439)
T 1mky_A 211 IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEP--RTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGL 287 (439)
T ss_dssp CC------CCEEEEE-TTEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred CCCCcCCceEEEEEE-CCEEEEEEECCCCccccccch--hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999988777764 677899999999976533210 11233333455678899999999999999888888888888
Q ss_pred HHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 482 l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+...++|+++|+||||+...... ..+++...+.+.+....+.+++++||++|.|+++||+.+.+.+
T Consensus 288 l~~~~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 288 MERRGRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp HHHTTCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEECccCCCchhh-HHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 88889999999999999764322 2233445566667777788999999999999999999998754
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=7.7e-48 Score=405.47 Aligned_cols=344 Identities=45% Similarity=0.738 Sum_probs=253.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+|+|.+|||||||+|+|++.....+.+.+|+|++...+.+.+.+..+.+|||||+.....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---------------- 66 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---------------- 66 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC-------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch----------------
Confidence 4789999999999999999999987777899999999999999999999999999999863211
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (549)
.+...+..++..++..+|++|+|+|++.+.+..+.++..+++.. ++|+++|+||+|+..... .
T Consensus 67 --------------~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~--~~pvilv~NK~D~~~~~~-~ 129 (436)
T 2hjg_A 67 --------------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRA-N 129 (436)
T ss_dssp --------------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC--CSCEEEEEECCCC------C
T ss_pred --------------hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCccchh-h
Confidence 01223445667788999999999999999888887777777654 899999999999875421 1
Q ss_pred HHHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecC
Q 008909 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (549)
Q Consensus 323 ~~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~ 401 (549)
...++..++ +++++||++|.|+.+|++.+...+++.... .......+|+++|.+|+|||||+|++++.....+++
T Consensus 130 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~----~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~ 205 (436)
T 2hjg_A 130 IYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET----KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN 205 (436)
T ss_dssp CCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS----CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-
T ss_pred HHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc----cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecC
Confidence 122334555 789999999999999999998887643211 112345799999999999999999999988777899
Q ss_pred CCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHH
Q 008909 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (549)
Q Consensus 402 ~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~ 481 (549)
.+|+|++.....+.. ++..+.||||||+.++..+. ...+.+...++..+++.+|++++|+|++++.+.++..++..
T Consensus 206 ~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~ 281 (436)
T 2hjg_A 206 VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGY 281 (436)
T ss_dssp --------CCEEEEE-TTEEEEETTHHHHTCBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred CCCceeeeeEEEEEE-CCeEEEEEECCCcCcCcccc---chHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHH
Confidence 999999988777764 67789999999997765432 23466666677788999999999999999999999999999
Q ss_pred HHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 482 l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+...++|+|+|+||||+...... ..+++.+.+.+.+....+++++++||++|.||++||+.+.+.+
T Consensus 282 ~~~~~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 282 AHEAGKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp HHHTTCEEEEEEECGGGSCCCTT-HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHcCCcEEEEEECccCCCcchH-HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 99999999999999999865432 2234556677777777788999999999999999999887654
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=3.2e-46 Score=395.40 Aligned_cols=345 Identities=44% Similarity=0.729 Sum_probs=258.3
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..++|+|+|.+|||||||+|+|++.....+.+.+|+|.+.....+.+.+..+.+|||||+.....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~--------------- 86 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--------------- 86 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch---------------
Confidence 46899999999999999999999988777889999999999999999999999999999863111
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
.+...+..++..++..+|++|+|+|++.+++..+.++.+++++. ++|+++|+||+|+.....
T Consensus 87 ---------------~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~--~~pvilV~NK~D~~~~~~- 148 (456)
T 4dcu_A 87 ---------------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRA- 148 (456)
T ss_dssp ---------------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC--CSCEEEEEECC--------
T ss_pred ---------------HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc--CCCEEEEEECccchhhhh-
Confidence 12233445677888999999999999999999888888888764 899999999999865321
Q ss_pred hHHHHHHcCC-CceEeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeec
Q 008909 322 QVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVS 400 (549)
Q Consensus 322 ~~~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~ 400 (549)
....++..++ .++++||++|.|+.+|++.+...+..... ........+++++|.+|+|||||+|++++.....+.
T Consensus 149 ~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~----~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~ 224 (456)
T 4dcu_A 149 NIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPE----TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS 224 (456)
T ss_dssp --CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCS----SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC
T ss_pred hHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccc----cccccccceeEEecCCCCCHHHHHHHHhCCCccccC
Confidence 1122334444 57899999999999999999877654221 112234678999999999999999999998878899
Q ss_pred CCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHH
Q 008909 401 PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAE 480 (549)
Q Consensus 401 ~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~ 480 (549)
+.+|+|++.....+.. ++..+.||||||+.+...+. ...+.+...++..+++.+|++|+|+|+++++++++..++.
T Consensus 225 ~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~ 300 (456)
T 4dcu_A 225 NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAG 300 (456)
T ss_dssp C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHH
T ss_pred CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccc---hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHH
Confidence 9999999988777764 67799999999987654322 2345666677778899999999999999999999999999
Q ss_pred HHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 481 RIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 481 ~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+.+.++|+|+|+||||+...... ..+++.+.+.+.+....+++++++||++|.||++||+.+.+.+
T Consensus 301 ~~~~~~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 301 YAHEAGKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp HHHHTTCEEEEEEECGGGSCCCSS-HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHcCCCEEEEEEChhcCCCchH-HHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999865442 2345566677777777889999999999999999999998754
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=1.5e-21 Score=195.47 Aligned_cols=171 Identities=28% Similarity=0.400 Sum_probs=133.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
....|+++|.+|+|||||+|++++.+...++..+++|++..........+.++.+|||||+.++.. ..........
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~----~~~l~~~~~~ 84 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK----SDVLGHSMVE 84 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT----TCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc----chhHHHHHHH
Confidence 345899999999999999999999887778899999999887777653278999999999976431 1223444556
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHH-HHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRI-AERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~-l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
.+..+++.+|++++|+|++++.+.++... +..+...+.|+++|+||+|+...... .....+.+.+.+. ...++++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~i~~ 160 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKN--VLPLIDEIHKKHP--ELTEIVP 160 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGG--GHHHHHHHHHHCT--TCCCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHH--HHHHHHHHHHhcc--CCCeEEE
Confidence 67778899999999999999988888887 78888889999999999999732221 1122233333321 3468999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++|.|+++|+++|.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHS
T ss_pred EeCCCCCCHHHHHHHHHHhC
Confidence 99999999999999998765
No 5
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=5.5e-22 Score=181.41 Aligned_cols=158 Identities=29% Similarity=0.422 Sum_probs=122.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.....+.+.+++|++.....+.. ++..+.+|||||+.++. ...+...+.+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~ 76 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREAS------DEVERIGIER 76 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCS------SHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccch------hHHHHHHHHH
Confidence 4589999999999999999999876555677889999887766664 56789999999997532 1223333455
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
++.+++.+|++++|+|++++.+.+...++..+.+. ++|+++|+||+|+...... +....+.+++
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------------~~~~~~~~~~ 143 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-------------MSEVNGHALI 143 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------EEEETTEEEE
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh-------------hhhccCCceE
Confidence 66788999999999999987776677777766654 6899999999998543211 0112345899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.||++||++|.+.+
T Consensus 144 ~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 144 RLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp ECCTTTCTTHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998764
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=7.6e-22 Score=196.55 Aligned_cols=163 Identities=25% Similarity=0.294 Sum_probs=129.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
...|+++|.+|+|||||+|++++.+...+++.++||++.+..... .++.++++|||||+.++. ..........
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~-~~~~~l~l~DTpG~~~~~------~~l~~~~~~~ 79 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPM------DALGEFMDQE 79 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCC------SHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE-eCCcEEEEecCccccchh------hHHHHHHHHH
Confidence 457999999999999999999998877778889999987766554 467899999999997642 2334445566
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
+..+++.+|++++|+|++++++..+..++..+... +.|+++|+||+|+...... +.+.+.+. ..+.++++
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~---~~~~~~~~ 151 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-----AMKAYHEL---LPEAEPRM 151 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-----HHHHHHHT---STTSEEEE
T ss_pred HHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-----HHHHHHHh---cCcCcEEE
Confidence 67788999999999999998888887777888877 8999999999999754220 12222222 34567999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++|.|+++|++.|.+.+
T Consensus 152 iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 152 LSALDERQVAELKADLLALM 171 (301)
T ss_dssp CCTTCHHHHHHHHHHHHTTC
T ss_pred EeCCCCCCHHHHHHHHHHhc
Confidence 99999999999999998753
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=2.6e-21 Score=184.37 Aligned_cols=173 Identities=19% Similarity=0.219 Sum_probs=128.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhh--hh
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE--AL 446 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e--~~ 446 (549)
..++|+++|.+|+|||||+|++++.. ...+...+|+|++.........++..+.||||||+.+.... ....+ ..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~~~~~~~~~ 104 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVP---GAAKAHWEQ 104 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCC---STHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCC---hhhHHHHHH
Confidence 45689999999999999999999986 34677888999887665555456789999999998543110 00001 11
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc------
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA------ 520 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~------ 520 (549)
....+++....+|++|+|+|++++++..+..++..+...++|+++|+||+|+...... ......+.+.+..
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQES---INALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhH---HHHHHHHHHHHHhhhhccc
Confidence 2223333445588899999999988988999999999899999999999999764322 1223334444443
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....+++++||++|.||++|+++|.+.+
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 2567899999999999999999998765
No 8
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=2.9e-21 Score=203.56 Aligned_cols=161 Identities=39% Similarity=0.613 Sum_probs=128.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCcc-chhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIR-KRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~-~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.+...+.+.+|||++.....+.. ++..+.+|||||+. ++. ...+...+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~------~~ve~~gi 314 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETN------DLVERLGI 314 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCC------TTCCCCCH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccch------hhHHHHHH
Confidence 34689999999999999999999987677889999999998877775 68899999999997 532 22344456
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEE
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 528 (549)
..++.+++.+|++|+|+|++++.+.++..++..+ .++|+++|+||+|+..... .+.+.+.+. ...++++
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~-------~~~~~~~~~--~~~~~i~ 383 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN-------EEEIKNKLG--TDRHMVK 383 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC-------HHHHHHHHT--CSTTEEE
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC-------HHHHHHHhc--CCCcEEE
Confidence 6778899999999999999998888887777655 4789999999999965311 122233332 2358999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++|.|+++|+++|.+.+
T Consensus 384 iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 384 ISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EEGGGTCCHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998753
No 9
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.85 E-value=1.5e-21 Score=205.73 Aligned_cols=161 Identities=26% Similarity=0.397 Sum_probs=98.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.....+.+.+|||++.....+.. ++..+.+|||||+.++.. ..+...+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~------~ve~~gi~ 304 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGE------EIEHEGIR 304 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchh------HHHHHHHH
Confidence 35689999999999999999999987777889999999988777764 778999999999976432 23444456
Q ss_pred HHHHHHhcCCcEEEEEEccccCCH----hHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITE----QDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~----~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
++..+++.+|++|+|+|++++.+. ....++..+. ++|+++|+||+|+....... .+.+.+. ++.+
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~-----~~~l~~~----~~~~ 373 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL-----IRAIADG----TGTE 373 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH-----HHHHHHH----HTSC
T ss_pred HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh-----HHHHHhc----CCCc
Confidence 677788999999999999998877 4445555444 79999999999997654321 1112221 2368
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||++|+++|.+.+
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 10
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=1e-20 Score=170.15 Aligned_cols=159 Identities=25% Similarity=0.392 Sum_probs=114.4
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
++|+++|.+|+|||||+|++++.........+++|.+.....+.. ++..+.+|||||+.++.. .........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 73 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK-------WEKKIQEKV 73 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSSS-------CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCccc-------hHHHHHHHH
Confidence 479999999999999999999876555677788888877666654 567899999999965321 111123334
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
..+++.+|++++|+|++++++..+..+...+...+.|+++|+||+|+...... +.+. ...+..+++++||
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---------~~~~-~~~~~~~~~~~Sa 143 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELY---------LGPL-YGLGFGDPIPTSS 143 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGG---------CGGG-GGGSSCSCEECBT
T ss_pred HHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHh---------HHHH-HhCCCCCeEEEec
Confidence 55679999999999999988888777888888889999999999999754211 1111 2334448999999
Q ss_pred ccCCCHHHHHHHHHhhh
Q 008909 532 IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~~ 548 (549)
++|.|++++|++|.+.+
T Consensus 144 ~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 144 EHARGLEELLEAIWERL 160 (161)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred ccCCChHHHHHHHHHhC
Confidence 99999999999998765
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.85 E-value=3.1e-20 Score=172.52 Aligned_cols=167 Identities=23% Similarity=0.287 Sum_probs=125.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH--
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS-- 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~-- 447 (549)
..++|+++|.+|+|||||+|++++.......+.+|+|.+...... +.++.+|||||+.... ....+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~i~Dt~G~~~~~-----~~~~~~~~~~ 92 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----NSKYYFVDLPGYGYAK-----VSKKERMLWK 92 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE----TTTEEEEECCCBSSSC-----CCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE----CCcEEEEECCCCcccc-----CChhhHHHHH
Confidence 456899999999999999999999876666777787776543322 4578999999964321 01111111
Q ss_pred --HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 448 --VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 448 --~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++....+|++++|+|++++....+..++.++...+.|+++|+||+|+...... ....+.+.+.+...+..+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSER---AKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH---HHHHHHHHHHHHSSCCSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHH---HHHHHHHHHHHhhcCCCc
Confidence 222333334559999999999888888888888999889999999999999754332 233455667777667779
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||++||++|.+.+
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998865
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=2.4e-20 Score=173.63 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=115.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.. ...+.+.+|+|++...... +.++.+|||||+.+... ........
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~-----~~~~~~~~ 92 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKV-----SKSEREAW 92 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSS-----CHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCcccc-----CHHHHHHH
Confidence 45789999999999999999999875 3445667777776544332 34799999999754311 11111111
Q ss_pred HH-HHHHHhcC---CcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NR-AFRAIRRS---DVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~-~~~~~~~a---d~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
.. ...+++.+ |++++|+|++++.+..+..++.++...+.|+++|+||+|+...... ....+.+.+.+....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCCC
Confidence 11 22234444 9999999999988988888888888889999999999999765432 22344555656655567
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|+++||++|.+.+
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHHHh
Confidence 899999999999999999998765
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=9e-21 Score=199.32 Aligned_cols=162 Identities=27% Similarity=0.439 Sum_probs=115.6
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
++|+++|.+|+|||||+|++++.....+.+.||+|++.....+. +++..+.+|||||+..... ...+......+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~-----~~~~~~~~~~~ 75 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVE-WYGKTFKLVDTCGVFDNPQ-----DIISQKMKEVT 75 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEE-ETTEEEEEEECTTTTSSGG-----GCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEE-ECCeEEEEEECCCcccccc-----chHHHHHHHHH
Confidence 47999999999999999999998766788999999998887776 4778999999999965311 11122334556
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHH-HHHHhcCCCCCEEEEc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDV-REKLRALDWAPIVYST 530 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~iS 530 (549)
..+++.||++|+|+|++.+++..+..+..+++..++|+++|+||+|+... . ...+ .+ +..++..+++++|
T Consensus 76 ~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~------~~~~~~~-~~~lg~~~~~~iS 146 (439)
T 1mky_A 76 LNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--F------EREVKPE-LYSLGFGEPIPVS 146 (439)
T ss_dssp HHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--H------HHHTHHH-HGGGSSCSCEECB
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--c------HHHHHHH-HHhcCCCCEEEEe
Confidence 77889999999999999999988888888888889999999999997421 0 1112 22 2234444789999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|+++|++.+.+.+
T Consensus 147 A~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 147 AEHNINLDTMLETIIKKL 164 (439)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhc
Confidence 999999999999997653
No 14
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.84 E-value=1.3e-20 Score=178.57 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=108.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+++++... +.....|++..+.........+ ..++.||||+|++++..+
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l------------- 78 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL------------- 78 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTTTCGGG-------------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH-------------
Confidence 4689999999999999999999764 4455556556666555554322 246889999999886542
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+... |+..+.. .+.|+|||+||+|+...+.+.. ++..+..... +++
T Consensus 79 -~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~-----~e~~~~a~~~-~~~ 151 (216)
T 4dkx_A 79 -IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI-----EEGERKAKEL-NVM 151 (216)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCH-----HHHHHHHHHH-TCE
T ss_pred -HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccH-----HHHhhHHHHh-CCe
Confidence 123689999999999999865554443 5555554 3689999999999976544432 2222333333 468
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||+++|+.|++.+
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 15
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=2.8e-20 Score=167.31 Aligned_cols=158 Identities=42% Similarity=0.694 Sum_probs=115.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
++|+++|.+|+|||||+|+|++.........+++|.+.....+.+.+..+.+|||||+.......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------------- 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE--------------- 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCC---------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH---------------
Confidence 68999999999999999999988755677788888888888888889999999999987643211
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (549)
..+...+...+..+|++++|+|++.+.+.....+..++... +.|+++|+||+|+..... ..
T Consensus 67 ----------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~-~~ 127 (161)
T 2dyk_A 67 ----------------KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRK--GKPVILVATKVDDPKHEL-YL 127 (161)
T ss_dssp ----------------HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH--TCCEEEEEECCCSGGGGG-GC
T ss_pred ----------------HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhc--CCCEEEEEECcccccchH-hH
Confidence 11223455678899999999999988777766677777664 789999999999976522 11
Q ss_pred HHHHHcCC-CceEeeccCCCChhhhHHHHHHHh
Q 008909 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 324 ~~~~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
..+...+. +++++||++|.|++++++.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 128 GPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 22334566 789999999999999999987654
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.84 E-value=1.8e-20 Score=184.50 Aligned_cols=165 Identities=19% Similarity=0.336 Sum_probs=124.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.. +.+++.+|+|++.....+.. .+..+.+|||||+.++........ . ...+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~-~-~e~i~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTS-L-DEQIAC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CC-H-HHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCC-H-HHHHHH
Confidence 3589999999999999999999986 78889999999988888775 567899999999987643211111 1 112334
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
.+...+.+|++++|+|+++ .+....+..++.+.++|+++|+||+|+......... .+.+.+.+ +.+++++|
T Consensus 79 ~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~---~~~l~~~l----g~~~i~~S 149 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIE---IDALSARL----GCPVIPLV 149 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEEC---HHHHHHHH----TSCEEECC
T ss_pred HHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHH---HHHHHHhc----CCCEEEEE
Confidence 4445689999999999997 355666778888889999999999998653332211 22233333 36999999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|+++|+++|.+.+
T Consensus 150 A~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYK 167 (274)
T ss_dssp CGGGHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 17
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.84 E-value=3.2e-20 Score=168.31 Aligned_cols=160 Identities=24% Similarity=0.383 Sum_probs=109.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
.+++++|.+|+|||||+|++++.. +.+...+|+|++.....+.. ++..+.+|||||+.++.. ......+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~------~~~~~~~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTA------NSIDEIIARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSS------SSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCC------cchhHHHHHH
Confidence 579999999999999999999864 44567788888776666553 567899999999977531 1111122222
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
+.....+|++++|+|+++. .....++..+.+.++|+++|+||+|+........ . .+.+.+.+ +.+++++||
T Consensus 76 ~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~-~~~~~~~~----~~~~~~~SA 146 (165)
T 2wji_A 76 YIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI--D-VDKLEKIL----GVKVVPLSA 146 (165)
T ss_dssp HHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCC--C-HHHHHHHH----TSCEEECBG
T ss_pred HHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhh--H-HHHHHHHh----CCCEEEEEc
Confidence 2222489999999999862 3344567777778999999999999854322211 0 12222222 358999999
Q ss_pred ccCCCHHHHHHHHHhhh
Q 008909 532 IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~~ 548 (549)
++|.|++++|++|.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 18
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=2.1e-20 Score=171.18 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=117.5
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.+..+|+++|.+|+|||||++++++.. +.....+++|.+.....+.. ++..+.+|||||+.++....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~----------- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR----------- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH-----------
Confidence 345789999999999999999999875 44455666666655544443 56789999999997764321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC------
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD------ 522 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~------ 522 (549)
..+++.+|++++|+|++++...+....+..+...++|+++|+||+|+...... .+.+.+....
T Consensus 73 ---~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 141 (178)
T 2lkc_A 73 ---ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPD--------RVMQELMEYNLVPEEW 141 (178)
T ss_dssp ---CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHH--------HHHHHHTTTTCCBTTT
T ss_pred ---HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHH--------HHHHHHHhcCcChhHc
Confidence 12468899999999999888888888888887789999999999999764211 1122222211
Q ss_pred --CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 --WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 --~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+++++||++|.|+++||++|.+.+
T Consensus 142 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 142 GGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp TSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 14799999999999999999998753
No 19
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.83 E-value=4.4e-22 Score=203.86 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=155.5
Q ss_pred HHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH-----HhHHH--HHHcCC---CceEee
Q 008909 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSE--FWSLGF---SPLPIS 337 (549)
Q Consensus 268 ~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~-----~~~~~--~~~~~~---~~v~vS 337 (549)
.....++++++|+|++++......++.++ ..++|+++|+||+|+.+... ..... +...++ +++.+|
T Consensus 67 ~~~~~~~lil~VvD~~d~~~s~~~~l~~~----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 67 RIGESKALVVNIVDIFDFNGSFIPGLPRF----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp HHHHHCCEEEEEEETTCSGGGCCSSHHHH----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred HhhccCcEEEEEEECCCCCCchhhHHHHH----hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 44477899999999988654333333333 34789999999999976421 11111 233455 578999
Q ss_pred ccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcC-----CCeeecCCCCceeeeeEE
Q 008909 338 AISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDAIDT 412 (549)
Q Consensus 338 A~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~-----~~~~~~~~~gtt~~~~~~ 412 (549)
|++|.|+.++++.+..... ..+++++|.+|+||||++|++++. ....++..||||++....
T Consensus 143 A~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~ 208 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI 208 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE
T ss_pred CCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE
Confidence 9999999999998876543 237899999999999999999986 557788999999987654
Q ss_pred EEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHH---hcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcE
Q 008909 413 EFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI---RRSDVVALVIEAMACITEQDCRIAERIEQEGKGC 489 (549)
Q Consensus 413 ~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~---~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ 489 (549)
.+ +..+.++||||+.+..... .......+..+ +..|.+++++++.+.........+..+...+.|+
T Consensus 209 ~~----~~~~~liDtPG~~~~~~~~-------~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~ 277 (369)
T 3ec1_A 209 PL----ESGATLYDTPGIINHHQMA-------HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSF 277 (369)
T ss_dssp EC----STTCEEEECCSCCCCSSGG-------GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEE
T ss_pred Ee----CCCeEEEeCCCcCcHHHHH-------HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceE
Confidence 43 2347999999997643211 11111223344 7899999999985432222222234444567899
Q ss_pred EEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHH
Q 008909 490 LIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVD 538 (549)
Q Consensus 490 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~ 538 (549)
++++||+|......... ..+.+.+.+ +..++|.++....++.
T Consensus 278 ~~v~~k~d~~~~~~~~~---~~~~~~~~~----g~~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 278 VCYMANELTVHRTKLEK---ADSLYANQL----GELLSPPSKRYAAEFP 319 (369)
T ss_dssp EEEECTTSCEEEEEGGG---HHHHHHHHB----TTTBCSSCGGGTTTCC
T ss_pred EEEecCCcccccccHHH---HHHHHHHhc----CCccCCCCchhhhhcc
Confidence 99999999876443322 223333332 2356666665554443
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.83 E-value=2.2e-20 Score=181.70 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=121.1
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
++|+++|.+|+|||||+|+++|.. +.+...||+|++.....+.. ++..+.+|||||+.++...... ......+.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~--~~~~e~i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEG--ISQDEQIAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC--------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccC--CCHHHHHHHH
Confidence 479999999999999999999875 67888999999988877764 5678999999999775321000 0111223333
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
+...+.+|++++|+|+++ .+....+..++.+.++|+++|+||+|+......... .+.+.+.+ +.+++++||
T Consensus 78 ~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~l----g~~vi~~SA 148 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISID---TEKLESLL----GCSVIPIQA 148 (256)
T ss_dssp HHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEEC---HHHHHHHH----CSCEEECBG
T ss_pred HHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHH---HHHHHHHc----CCCEEEEEC
Confidence 333389999999999997 355666778888889999999999998654332211 22233333 469999999
Q ss_pred ccCCCHHHHHHHHHhh
Q 008909 532 IAGQSVDKYVLYLATS 547 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~ 547 (549)
++|.|+++|+++|.++
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999764
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.83 E-value=1.2e-19 Score=173.79 Aligned_cols=170 Identities=21% Similarity=0.231 Sum_probs=113.5
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.. +.+.+.+++|++.....+.. ++..+.+|||||+.+..... ....+ ..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~--~~~~~---~~ 100 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFEN--RNTIE---MT 100 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGG--CCHHH---HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccch--hhhHH---HH
Confidence 45789999999999999999999876 44677788888876655543 56789999999995432100 00000 11
Q ss_pred HHHHHHhcCCcEEEEEEccccCC---HhHHHHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC-C
Q 008909 450 RAFRAIRRSDVVALVIEAMACIT---EQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD-W 523 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~---~~~~~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~-~ 523 (549)
.....++.+|++|+|+|++++.+ .....++..+... ++|+++|+||+|+........ .....+.+.....+ .
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSI--DNKLLIKQILDNVKNP 178 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCH--HHHHHHHHHHHHCCSC
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHH--HHHHHHHHHHHhcCCC
Confidence 12234688999999999998654 2344566767665 899999999999976544321 11222333333332 2
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||++||++|.+.+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEecccCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 22
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=3.6e-20 Score=184.41 Aligned_cols=164 Identities=27% Similarity=0.336 Sum_probs=126.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+|+|++|||||||+|+|++.+...+++.+++|.....+....++.++.+|||||+.+... .
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~---~------------ 71 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD---A------------ 71 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS---H------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh---H------------
Confidence 4579999999999999999999998777788889999887777777888999999999875321 0
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH--
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-- 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~-- 320 (549)
+...+...+..++..+|++++|+|++.+++..+..+.+.+.....+.|+++|+||+|+.....
T Consensus 72 ---------------l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 136 (301)
T 1wf3_A 72 ---------------LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEA 136 (301)
T ss_dssp ---------------HHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHH
T ss_pred ---------------HHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHH
Confidence 112234456678899999999999998877776666666665434789999999999875432
Q ss_pred HhHHHHHHcC-CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 321 MQVSEFWSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 321 ~~~~~~~~~~-~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
......+ .+ .+++++||++|.|++++++.+...++.
T Consensus 137 ~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 137 MKAYHEL-LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 2222222 22 257999999999999999999876653
No 23
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.82 E-value=1.8e-20 Score=191.77 Aligned_cols=232 Identities=18% Similarity=0.244 Sum_probs=144.5
Q ss_pred CCCeEEEEeccCCCChhhHHhHHH-HHH---cCCCceEeeccCCCChhhhHHHHHHHhhhh---ccc----hhhhhcccc
Q 008909 302 MDKFIILAVNKCESPRKGIMQVSE-FWS---LGFSPLPISAISGTGTGELLDLVCSELKKV---EGT----EDLVEEENR 370 (549)
Q Consensus 302 ~~~p~ivv~NK~D~~~~~~~~~~~-~~~---~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~---~~~----~~~~~~~~~ 370 (549)
..++.++++||+|+.......... +.. .+.....+++..+.+...+...+....... ... .........
T Consensus 87 ~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 166 (357)
T 2e87_A 87 DRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLE 166 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 356778999999998765543322 222 243344444444444444333322111111 000 000111235
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
...++++|.+|+|||||+|++++.. ..+...+++|.+.....+.. ++..+.+|||||+.++.... .+..+ ...
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~---~~~ 239 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISE--RNEIE---KQA 239 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTT--SCHHH---HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhh--hhHHH---HHH
Confidence 6789999999999999999999876 55677788888776655543 46789999999997643211 01111 111
Q ss_pred HHHHHhcCCcEEEEEEccccC--CHhH-HHHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACI--TEQD-CRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~--~~~~-~~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
.......+|++++|+|++.+. +.+. ..++..+... ++|+++|+||+|+...... ..+.+.+.. .+.+
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~-------~~~~~~~~~-~~~~ 311 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI-------KRLEKFVKE-KGLN 311 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHH-------HHHHHHHHH-TTCC
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHH-------HHHHHHHHh-cCCC
Confidence 222235799999999988743 4333 4566666652 7999999999999753221 122233333 3468
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||++|+++|.+.+
T Consensus 312 ~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 312 PIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp CEECBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 24
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.82 E-value=1.5e-21 Score=199.77 Aligned_cols=207 Identities=20% Similarity=0.181 Sum_probs=136.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH-----HhHHH--HHHcCC---CceEe
Q 008909 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSE--FWSLGF---SPLPI 336 (549)
Q Consensus 267 ~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~-----~~~~~--~~~~~~---~~v~v 336 (549)
......++++++|+|++++. ..+...+.+...++|+++|+||+|+.+... ..... ....++ +++.+
T Consensus 64 ~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~i 139 (368)
T 3h2y_A 64 NGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLI 139 (368)
T ss_dssp HHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred HHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 34455678999999997632 222233444344889999999999975431 11111 234566 68899
Q ss_pred eccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCC------CeeecCCCCceeeee
Q 008909 337 SAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED------RTIVSPISGTTRDAI 410 (549)
Q Consensus 337 SA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~------~~~~~~~~gtt~~~~ 410 (549)
||++|.|++++++.+..... ..+++++|.+|+||||++|++++.. ...++..||||++..
T Consensus 140 SA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~ 205 (368)
T 3h2y_A 140 SAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI 205 (368)
T ss_dssp CTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE
T ss_pred eCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE
Confidence 99999999999998876542 2478999999999999999999852 455788999999876
Q ss_pred EEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHH---HhcCCcEEEEEEccccCCHhHHHHHHHHHHhCC
Q 008909 411 DTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA---IRRSDVVALVIEAMACITEQDCRIAERIEQEGK 487 (549)
Q Consensus 411 ~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~---~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~ 487 (549)
...+ . ..+.++||||+.+..... .+.....+.. .+..+.++++++............+..+...+.
T Consensus 206 ~~~~--~--~~~~liDtPG~~~~~~~~-------~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~ 274 (368)
T 3h2y_A 206 DIPL--D--EESSLYDTPGIINHHQMA-------HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRR 274 (368)
T ss_dssp EEES--S--SSCEEEECCCBCCTTSGG-------GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSE
T ss_pred EEEe--c--CCeEEEeCCCcCcHHHHH-------HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCc
Confidence 5443 2 237999999997643211 1111122222 367899999999854322223323344455678
Q ss_pred cEEEEEecccCCCCC
Q 008909 488 GCLIVVNKWDTIPNK 502 (549)
Q Consensus 488 p~ivv~NK~Dl~~~~ 502 (549)
|+++++||+|.....
T Consensus 275 ~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 275 AFTCHFSNRLTIHRT 289 (368)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred eEEEEecCccccccc
Confidence 999999999987643
No 25
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=1.1e-19 Score=177.13 Aligned_cols=160 Identities=23% Similarity=0.363 Sum_probs=119.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.. +.+...||+|.+.....+.. ++..+.+|||||+.++... .. ...+.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~-----~~-~e~v~~ 76 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYS-----SI-DEKIAR 76 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSS-----SH-HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCC-----CH-HHHHHH
Confidence 4689999999999999999999875 55788899999887777664 5678999999999775321 11 112222
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
.+.....+|++++|+|+++. +....++.++.+.++|+++|+||+|+......... ...+.+.+ +.+++++|
T Consensus 77 ~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~---~~~l~~~l----g~~vi~~S 147 (258)
T 3a1s_A 77 DYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKID---RYELQKHL----GIPVVFTS 147 (258)
T ss_dssp HHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBC---HHHHHHHH----CSCEEECC
T ss_pred HHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHH---HHHHHHHc----CCCEEEEE
Confidence 22223689999999999873 45566778888889999999999998643332211 22233332 36999999
Q ss_pred cccCCCHHHHHHHHHhh
Q 008909 531 AIAGQSVDKYVLYLATS 547 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~ 547 (549)
|++|.|+++||+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEY 164 (258)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHH
Confidence 99999999999998764
No 26
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.82 E-value=8.5e-21 Score=199.14 Aligned_cols=159 Identities=34% Similarity=0.478 Sum_probs=114.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.....+.+.+|+|++.....+.. ++..+.+|||||+.++. ...+...+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~------~~ve~~gi~ 295 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETS------DQVEKIGVE 295 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccch------hHHHHHHHH
Confidence 45689999999999999999999876666888899999987666654 77899999999997642 223444556
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc-CCCCCEEE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA-LDWAPIVY 528 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~ 528 (549)
++..+++.+|++|+|+|++++.+.++..++..+.. +|+++|+||+|+....... .+.. ....++++
T Consensus 296 ~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~-----------~~~~~~~~~~~i~ 362 (462)
T 3geh_A 296 RSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLIT-----------SLEYPENITQIVH 362 (462)
T ss_dssp ---CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGST-----------TCCCCTTCCCEEE
T ss_pred HHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhH-----------HHHHhccCCcEEE
Confidence 67777899999999999999999888888777654 7999999999997643321 0111 13468999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++|.|+++|+++|.+.+
T Consensus 363 iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 27
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=1.7e-19 Score=163.06 Aligned_cols=156 Identities=20% Similarity=0.152 Sum_probs=107.3
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||+|++++... .... ..++.+.....+...+ ...+.+|||||+.++.. .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------------~ 67 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKY-DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------------M 67 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSC-CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------------H
Confidence 5899999999999999999998643 2222 2333333333333322 34689999999976432 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+. ..++..+.. .+.|+++|+||+|+...+... .+.+.+......+.+
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~ 142 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG-----KEQGQNLARQWCNCA 142 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC-----HHHHHHHHHHTTSCE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC-----HHHHHHHHHHccCCc
Confidence 2235788999999999987543333 234455544 379999999999997543322 223334444444678
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++|+++|.+.+
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 143 FLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 28
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=1.3e-19 Score=181.26 Aligned_cols=166 Identities=30% Similarity=0.471 Sum_probs=129.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
...|+++|.+|||||||+|+|+|.+...++..+++|.....+..... +.++.+|||||+.+... ...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~----------- 77 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDV----------- 77 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCH-----------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chh-----------
Confidence 45899999999999999999999987778899999999998888888 89999999999976431 111
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHH-HHHHHHccCCCeEEEEeccCCCC-hhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI-ADWLRKNYMDKFIILAVNKCESP-RKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~-~~~l~~~~~~~p~ivv~NK~D~~-~~~ 319 (549)
+...+...+..++..+|++++|+|++.+.+..+..+ ...+... +.|+++|+||+|+. ...
T Consensus 78 ----------------l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~ 139 (308)
T 3iev_A 78 ----------------LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAK 139 (308)
T ss_dssp ----------------HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGG
T ss_pred ----------------HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHH
Confidence 112234556678889999999999998887777666 6666654 78999999999987 332
Q ss_pred H-HhHHH-HH-HcC--CCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 320 I-MQVSE-FW-SLG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 320 ~-~~~~~-~~-~~~--~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
. ..... +. ..+ .+++++||++|.|++++++.+...+...
T Consensus 140 ~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 140 NVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 2 22222 21 222 5789999999999999999999888643
No 29
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.82 E-value=8.1e-20 Score=165.23 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=96.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.......+.+|++..... ........+.+|||||+.++..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~-------------- 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI--VVDGEEASLMVYDIWEQDGGRWL-------------- 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE--EETTEEEEEEEEECC----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE--EECCEEEEEEEEECCCCccchhh--------------
Confidence 35899999999999999999998765556666677664221 11223457899999999764321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+.. .++..+... ++|+++|+||+|+........ ....+... ..+.+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~-~~~~~ 139 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV-----DEGRACAV-VFDCK 139 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH-----HHHHHHHH-HTTCE
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH-----HHHHHHHH-HhCCc
Confidence 12357899999999999976443333 355555543 789999999999976544331 11222222 23468
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 140 ~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 140 FIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 30
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=168.32 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=108.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++... .....++.+.+.....+...+ ...+.+|||||+.++..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 90 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS------------- 90 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH-------------
Confidence 346899999999999999999998653 233344445554444444322 24789999999865421
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++|+|+|++++.+.++. .|+..+... +.|++||+||+|+...+... .+...+......+.
T Consensus 91 -~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~-----~~~~~~~~~~~~~~ 164 (192)
T 2il1_A 91 -ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT-----RQQGEKFAQQITGM 164 (192)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHTSTTC
T ss_pred -HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC-----HHHHHHHHHhcCCC
Confidence 234467899999999999986554443 344555543 78999999999997543322 12233444444567
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 165 ~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 165 RFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=165.29 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=109.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++.........++++.+.....+.. ++ ..+.+|||||+.++...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----------- 76 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSV----------- 76 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-----------
Confidence 34689999999999999999999876544455566666655444433 33 37899999998664321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++++|+|++++.+.+. ..++..+.. .+.|+++|+||+|+........ +...+..... +
T Consensus 77 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~ 147 (180)
T 2g6b_A 77 ---THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR-----EDGEKLAKEY-G 147 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH-----HHHHHHHHHH-T
T ss_pred ---HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCH-----HHHHHHHHHc-C
Confidence 2235789999999999988644333 235555555 4789999999999986543321 1122222222 3
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 32
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.81 E-value=2.6e-19 Score=167.05 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=109.0
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
....+|+++|.+|+|||||++++++.....+...+.+... ...+. ..+..+.+|||||+.++....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~-~~~~~~~i~Dt~G~~~~~~~~----------- 80 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFE-KGRVAFTVFDMGGAKKFRGLW----------- 80 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEE-ETTEEEEEEEECCSGGGGGGG-----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEE-eCCEEEEEEECCCCHhHHHHH-----------
Confidence 3456899999999999999999998764443323322211 22222 356789999999997754321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh-----------CCcEEEEEecccCCCCCchhhhHHHHHHHH-
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE-----------GKGCLIVVNKWDTIPNKNQQTATYYEQDVR- 515 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~-----------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~- 515 (549)
..+++.+|++|+|+|++++.+.... .++..+... ++|++||+||+|+....... ++...+.
T Consensus 81 ---~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---~~~~~~~~ 154 (199)
T 4bas_A 81 ---ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAA---ELVEILDL 154 (199)
T ss_dssp ---GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHH---HHHHHHTH
T ss_pred ---HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHH---HHHHHhcc
Confidence 1247899999999999987654444 455555543 89999999999998654322 2222222
Q ss_pred HHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 516 EKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 516 ~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+......+++++||++|.||+++|++|.+.+
T Consensus 155 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 155 TTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 112123456899999999999999999998754
No 33
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.81 E-value=1.2e-19 Score=177.80 Aligned_cols=160 Identities=22% Similarity=0.348 Sum_probs=116.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.. ..+...||+|.+.....+.. +..+.+|||||+.++... . ....+.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~-----~-~~e~v~~ 73 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPY-----S-PEAKVAR 73 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCS-----S-HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCC-----C-hHHHHHH
Confidence 3579999999999999999999875 55788899999877666643 678999999999775321 1 1112222
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
.+-....+|++++|+|+++. +....+..++.+.++|+++|+||+|+......... ...+.+.+ +.+++++|
T Consensus 74 ~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~l----g~~vi~~S 144 (272)
T 3b1v_A 74 DYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKIN---VDKLSYHL----GVPVVATS 144 (272)
T ss_dssp HHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCC---HHHHHHHH----TSCEEECB
T ss_pred HHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHH---HHHHHHHc----CCCEEEEE
Confidence 22112479999999999873 44556777788889999999999998643222111 12233332 36899999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|+++||++|.+.+
T Consensus 145 A~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TTTTBSHHHHHHHHHHSC
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 999999999999998753
No 34
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=1.9e-19 Score=171.44 Aligned_cols=173 Identities=23% Similarity=0.272 Sum_probs=124.4
Q ss_pred CCCCCCeEEEEcCCCCchhhHHHhhhCCC-ceeeecCCCccccceeeeee-eCCceEEEEEcccccccCCCCcchhhhhh
Q 008909 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (549)
Q Consensus 159 ~~~~~~~I~i~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~i~ 236 (549)
.....++|+++|.+|+|||||+|+|++.. ...+...+++|.......+. ..+..+.+|||||+........ ..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~---- 99 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGA-AK---- 99 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCST-HH----
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChh-hH----
Confidence 34567899999999999999999999886 45677888989887766665 5678899999999865322211 00
Q ss_pred hhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCC
Q 008909 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 237 ~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
..+.. +...+.+....+|++++|+|++.++...+..+..++... +.|+++|+||+|+.
T Consensus 100 -------------------~~~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 100 -------------------AHWEQ-LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT--GKPIHSLLTKCDKL 157 (223)
T ss_dssp -------------------HHHHH-HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG--CCCEEEEEECGGGS
T ss_pred -------------------HHHHH-HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEeccccC
Confidence 00111 112233345558999999999988887777777877764 78999999999987
Q ss_pred hhhHHh-----HHH-HHH-------cCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 317 RKGIMQ-----VSE-FWS-------LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 317 ~~~~~~-----~~~-~~~-------~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
...... ... ... .+.+++++||++|.|+.++++.+.+.+...
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 158 TRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 643211 111 111 345789999999999999999998887643
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=4.7e-20 Score=193.67 Aligned_cols=160 Identities=29% Similarity=0.390 Sum_probs=109.4
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
++|+++|.+|+|||||+|++++.....+.+.+|+|++....... +++..+.+|||||+.... ..........+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~------~~~~~~~~~~~ 76 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGD------EPFLAQIRQQA 76 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECT-TCSSCCEEEC---------------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEE-ECCceEEEEECCCCCCcc------hhHHHHHHHHH
Confidence 58999999999999999999998766788999999998876665 467899999999995311 11223334556
Q ss_pred HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
..+++.||++|+|+|++++.+..+..+...++..++|+++|+||+|+....... .+ +..++..+++++||
T Consensus 77 ~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~---------~~-~~~lg~~~~~~iSA 146 (436)
T 2hjg_A 77 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANI---------YD-FYSLGFGEPYPISG 146 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CC---------CS-SGGGSSCCCEECBT
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhH---------HH-HHHcCCCCeEEEeC
Confidence 678899999999999999999988888888888899999999999987532110 01 11233347899999
Q ss_pred ccCCCHHHHHHHHHhhh
Q 008909 532 IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~~~ 548 (549)
++|.|+++|++++.+.+
T Consensus 147 ~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHF 163 (436)
T ss_dssp TTTBTHHHHHHHHHHTG
T ss_pred cCCCChHHHHHHHHHhc
Confidence 99999999999998754
No 36
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=165.17 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=113.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 81 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI------------ 81 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh------------
Confidence 35689999999999999999999865 4445566666666555555422 247899999998664321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+. ..|+..+... +.|+++|+||+|+...+.... ....+..... +.
T Consensus 82 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~ 153 (196)
T 3tkl_A 82 --TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY-----TTAKEFADSL-GI 153 (196)
T ss_dssp --HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH-----HHHHHHHHHT-TC
T ss_pred --HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH-----HHHHHHHHHc-CC
Confidence 2346799999999999998544333 3355555554 789999999999976554331 2222333333 46
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 154 ~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 154 PFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998754
No 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=164.93 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=111.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+.. ++ ..+.+|||||+.++....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------- 75 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTIT---------- 75 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhH----------
Confidence 45689999999999999999999875 33556667777766555554 44 578999999987653221
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
..+++.+|++++|+|++++.+..... |+..+... +.|+++|+||+|+........ ....+..... +.
T Consensus 76 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~ 145 (181)
T 3tw8_B 76 ----STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET-----EDAYKFAGQM-GI 145 (181)
T ss_dssp ----GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH-----HHHHHHHHHH-TC
T ss_pred ----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH-----HHHHHHHHHc-CC
Confidence 12578999999999999865444433 55556554 589999999999875443221 1122222222 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|++++|++|.+.+
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 146 QLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998754
No 38
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.81 E-value=2.8e-20 Score=192.71 Aligned_cols=162 Identities=27% Similarity=0.338 Sum_probs=122.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.....+...+|+|.+.....+.+.+..++.+|||||+.++..+ ......
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l-------~~~~~~ 105 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL-------GRLRVE 105 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT-------CCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch-------hHHHHH
Confidence 3568999999999999999999998766678889999998888877644448999999999876432 123355
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 529 (549)
++..+++.+|++|+|+|+ +....+..++.++.+.++|+++|+||+|+...... ...+.+....+.+++++
T Consensus 106 ~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--------~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--------ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--------HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--------HHHHHHHHHcCCCEEEE
Confidence 677788999999999999 56788899999999999999999999999876543 12334444455799999
Q ss_pred ccccCCCHHHHHHHHHhhh
Q 008909 530 TAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 530 SA~~g~~v~~L~~~l~~~~ 548 (549)
||++|.|+++||++|.+.+
T Consensus 176 SAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 9999999999999998765
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=1.9e-19 Score=167.59 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=109.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.. +. .....|+.+.....+...+ ...+.+|||||+.++....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 88 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE-IP-TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR----------- 88 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG-----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC-CC-CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHh-----------
Confidence 45689999999999999999999875 22 2233333333333333211 3356999999997754321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
..+++.+|++++|+|++++.+..+. .|+..+... +.|+++|+||+|+......... .+.+.+.....+..
T Consensus 89 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 89 ---PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVT---KQEGDDLCQKLGCV 162 (194)
T ss_dssp ---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCC---HHHHHHHHHHHTCS
T ss_pred ---HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCccc---HHHHHHHHHhcCCC
Confidence 1257899999999999986555553 456666655 6899999999999754222211 22333344444444
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.++++||++|.||+++|++|.+.+
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 163 AYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeecCCCCCHHHHHHHHHHHH
Confidence 499999999999999999998753
No 40
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.81 E-value=4.7e-19 Score=162.58 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=109.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.... ....++.+.+.....+...+ ...+.+|||||+.++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 77 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------------- 77 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh-------------
Confidence 468999999999999999999987532 23333333333333333222 357999999998764321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+. ..++..+... +.|+++|+||+|+....... .+++.+.+... +.+
T Consensus 78 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 150 (181)
T 2efe_B 78 -APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT-----AEDAQTYAQEN-GLF 150 (181)
T ss_dssp -THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC-----HHHHHHHHHHT-TCE
T ss_pred -hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC-----HHHHHHHHHHc-CCE
Confidence 2236789999999999988654333 3466666664 68899999999997654332 12233333333 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 151 FMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 41
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=168.01 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=107.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||++++++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~------------ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRT------------ 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHH------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHH------------
Confidence 35689999999999999999999865 33333444445554444443 33 4899999999966422
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
....+++.+|++|+|+|++++.+.+.. .|+..+.. .++|++||+||+|+...+... .+++.+.+...+.
T Consensus 94 --~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~-----~~~~~~~~~~~~~ 166 (201)
T 2hup_A 94 --ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS-----LAEAQSLAEHYDI 166 (201)
T ss_dssp --HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-----HHHHHHHHHHTTC
T ss_pred --HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC-----HHHHHHHHHHcCC
Confidence 233467999999999999875443333 45566665 368999999999997543322 2233344444443
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|.+.+
T Consensus 167 ~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 167 LCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999997653
No 42
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.81 E-value=8.9e-20 Score=181.88 Aligned_cols=164 Identities=27% Similarity=0.345 Sum_probs=123.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCcc-chhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIR-KRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~-~~~~~~~~~~~~e~~~~~ 449 (549)
...|+++|++|+|||||+|++++.....+++.+++|++.....+. .++.++.+|||||+. .... ........
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~~~~~~------~l~~~~~~ 80 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEEKR------AINRLMNK 80 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHHHH------HHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE-ECCeeEEEEECcCCCccchh------hHHHHHHH
Confidence 457999999999999999999998766677888999887665554 467789999999996 3211 01111112
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 529 (549)
.+..+++.+|++++|+|+++ ++..+..+++.+...+.|+++|+||+|+..... .+...+.+.....++..++++
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~-----~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKA-----DLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHH-----HHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHH-----HHHHHHHHHHHhcCcCceEEE
Confidence 23345789999999999988 888888888888777899999999999875211 122333334344455579999
Q ss_pred ccccCCCHHHHHHHHHhh
Q 008909 530 TAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 530 SA~~g~~v~~L~~~l~~~ 547 (549)
||++|.|+++|++.+.+.
T Consensus 155 SA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp CTTTTTTHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999865
No 43
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.2e-19 Score=165.92 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=111.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe-eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.... ...+..|++.......+. ..+..+.+|||||+.++...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~------------ 88 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHSL------------ 88 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGGG------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHhh------------
Confidence 3468999999999999999999987532 234444555443332221 23457999999998765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+.. .|+..+... ++|+++|+||+|+...+... .+++.+.+... +.
T Consensus 89 --~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~-----~~~~~~~~~~~-~~ 160 (192)
T 2fg5_A 89 --APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP-----LKDAKEYAESI-GA 160 (192)
T ss_dssp --THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHTT-TC
T ss_pred --hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-----HHHHHHHHHHc-CC
Confidence 22367899999999999886543433 355666554 78999999999996533322 22334444444 46
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|+++||++|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999998754
No 44
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=163.28 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=101.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.......+.+|++.... .+...+ ...+.+|||||+..+. ...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~----------~~~~- 70 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYER--TLTVDGEDTTLVVVDTWEAEKLD----------KSWS- 70 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEE--EEEETTEEEEEEEECCC-----------------CHH-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEE--EEEECCEEEEEEEEecCCCCccc----------hhhh-
Confidence 4589999999999999999999876555555556554332 232222 2478999999996520 0011
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+.. .++..+... ++|+++|+||+|+...+.... +......... +.
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~-----~~~~~~~~~~-~~ 143 (175)
T 2nzj_A 71 -QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV-----EEGRACAVVF-DC 143 (175)
T ss_dssp -HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH-----HHHHHHHHHH-TS
T ss_pred -HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH-----HHHHHHHHHc-CC
Confidence 12346889999999999875443333 355556553 799999999999976544321 1111222222 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||++||++|.+.+
T Consensus 144 ~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 144 KFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 45
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=2.1e-19 Score=164.43 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=117.4
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+.++|+++|.+|||||||+|+|++.. ......+++|.+.....+.+++..+.+|||||+..+.....
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------- 73 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA---------- 73 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC----------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH----------
Confidence 3457899999999999999999999875 33445667777777777888899999999999876544321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
..+..+|++++|+|++.+......+.+..+... +.|+++|+||+|+....
T Consensus 74 ----------------------------~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~--~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 74 ----------------------------RGAQVTDIVILVVAADDGVMPQTVEAINHAKAA--NVPIIVAINKMDKPEAN 123 (178)
T ss_dssp ----------------------------SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGG--SCCEEEEEETTTSSCSC
T ss_pred ----------------------------HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhC--CCCEEEEEECccCCcCC
Confidence 345678999999999887666655555555443 78999999999997642
Q ss_pred HHhHHHHHH-c-------C--CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IMQVSEFWS-L-------G--FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~~~~~~~~-~-------~--~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
......... . + .+++++||++|.|++++++.+.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 124 PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 222222211 1 1 368999999999999999999877654
No 46
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=3.8e-19 Score=161.35 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=106.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------- 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL------------- 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh-------------
Confidence 4689999999999999999999865 3334445555555444444322 236889999998664321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+...+... .++..+..... +.+
T Consensus 72 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 144 (170)
T 1z08_A 72 -GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS-----IQEAESYAESV-GAK 144 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC-----HHHHHHHHHHT-TCE
T ss_pred -HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC-----HHHHHHHHHHc-CCe
Confidence 112468999999999998854433333 4455544 478999999999997643332 12233333333 368
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998653
No 47
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.80 E-value=8.7e-20 Score=166.74 Aligned_cols=161 Identities=27% Similarity=0.324 Sum_probs=117.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+|+|.+|||||||+|+|++.....+.+.+++|.+...+.+.+++..+.+|||||+..... .+ +.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~-~~-------- 71 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD---EV-ER-------- 71 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS---HH-HH--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh---HH-HH--------
Confidence 3579999999999999999999876556778889999988888889998999999999865321 00 00
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHc-cCCCeEEEEeccCCCChhhHH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN-YMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~-~~~~p~ivv~NK~D~~~~~~~ 321 (549)
.-...+..++..+|++++|+|++.+.+.....+...+... ..+.|+++|+||+|+......
T Consensus 72 ------------------~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~ 133 (172)
T 2gj8_A 72 ------------------IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 133 (172)
T ss_dssp ------------------HHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE
T ss_pred ------------------HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh
Confidence 0001233567889999999999887766655555555443 236899999999997532110
Q ss_pred hHHHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 322 ~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. ....+.+++++||++|.|++++++.+.+.+.
T Consensus 134 ~---~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 134 M---SEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp E---EEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred h---hhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0 0012447899999999999999999987654
No 48
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.80 E-value=3.2e-19 Score=163.41 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=103.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++..... ..+ |+.+.....+...+ ...+.+|||||+.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------------- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESEQYKKEMLVDGQTHLVLIREEAGAPD----------------- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSSEEEEEEEETTEEEEEEEEECSSSCC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-CcceeEEEEEEECCEEEEEEEEECCCCch-----------------
Confidence 4689999999999999999999875432 223 22232333333222 24688999999853
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
..+++.+|++++|+|++++.+.+... |+.++.. .+.|+++|+||+|+......... .+++.+......
T Consensus 67 --~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~---~~~~~~~~~~~~ 141 (178)
T 2iwr_A 67 --AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG---DARARALXADMK 141 (178)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC---HHHHHHHHHHHS
T ss_pred --hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC---HHHHHHHHHhhc
Confidence 13578899999999999865544444 3334443 26899999999998532111111 122333333334
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+.+++++||++|.|++++|++|.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 142 RCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp SEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CCeEEEEeccccCCHHHHHHHHHHH
Confidence 5689999999999999999999764
No 49
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=5.9e-19 Score=159.83 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=106.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++..... ...+..+.+.....+... .+..+.+|||||+.++..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------------- 70 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS-------------- 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh--------------
Confidence 4689999999999999999999765322 222222222222222222 245789999999966432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
....+++.+|++++|+|++++.+.+.. .++..+... +.|+++|+||+|+....... .++..+.... .+.+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~-----~~~~~~~~~~-~~~~ 144 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD-----FQEAQSYADD-NSLL 144 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHH-TTCE
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC-----HHHHHHHHHH-cCCe
Confidence 123467899999999999876443333 355555554 68999999999986543322 1222333333 3468
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++||++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=5.6e-19 Score=161.44 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=108.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 71 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS-------------- 71 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH--------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhh--------------
Confidence 4689999999999999999999865 3334445555555444444322 24799999999865432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~ 521 (549)
....+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+... ... .+.+.+.+...
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~-----~~~~~~~~~~~ 145 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-QVS-----TEEAQAWCRDN 145 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-SSC-----HHHHHHHHHHT
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc-ccC-----HHHHHHHHHhc
Confidence 122357899999999999886443333 34444443 46899999999999732 221 22333444435
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
...+++++||++|.|++++|++|.+.+
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 146 GDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp TCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 567999999999999999999997653
No 51
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.80 E-value=8.1e-19 Score=161.47 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=105.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++.. +.....+.++.. ....... ++. .+.+|||||+.++...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----------- 82 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI-FVDDYDPTIEDS-YLKHTEI-DNQWAILDVLDTAGQEEFSAM----------- 82 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEE-EEEEEEE-TTEEEEEEEEECCSCGGGCSS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccce-eEEEEEe-CCcEEEEEEEECCCchhhHHH-----------
Confidence 45689999999999999999999764 322333333333 3333332 333 4667999999765321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+...+.... +...+.....+
T Consensus 83 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~-----~~~~~~~~~~~ 154 (183)
T 3kkq_A 83 ---REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR-----DQGKEMATKYN 154 (183)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH-----HHHHHHHHHHT
T ss_pred ---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCH-----HHHHHHHHHhC
Confidence 12357899999999999985433332 34444433 4789999999999976444321 22233333333
Q ss_pred CCCEEEEccc-cCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAI-AGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~-~g~~v~~L~~~l~~~~ 548 (549)
.+++++||+ +|.|++++|++|.+.+
T Consensus 155 -~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 155 -IPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp -CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred -CeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 689999999 9999999999998754
No 52
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.80 E-value=5e-19 Score=165.58 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=101.4
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++++.......+..+.+ ...+. .++..+.+|||||+.++..+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~-~~~~~l~i~Dt~G~~~~~~~~------------- 86 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELT-IAGMTFTTFDLGGHIQARRVW------------- 86 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEE-ETTEEEEEEEECC----CCGG-------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEE-ECCEEEEEEECCCcHhhHHHH-------------
Confidence 458999999999999999999986543333322332 22333 256889999999997654311
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc-----
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~----- 520 (549)
..+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+..... .+++.+.+..
T Consensus 87 -~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~ 158 (198)
T 1f6b_A 87 -KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS-------EERLREMFGLYGQTT 158 (198)
T ss_dssp -GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC-------HHHHHHHHTCTTTCC
T ss_pred -HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC-------HHHHHHHhCcccccc
Confidence 1257899999999999986544433 35555543 4799999999999975221 1233344332
Q ss_pred -----------CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 -----------LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 -----------~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....++++|||++|.||+++|++|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 159 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1345799999999999999999998765
No 53
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.80 E-value=1.2e-19 Score=167.12 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=87.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+|+++|.+|+|||||++++++.. +.....++++.+.....+.. ++ ..+.+|||||+.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~------------ 73 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTI------------ 73 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhh------------
Confidence 4689999999999999999999754 33444555666655544443 33 57999999999765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+...+... .+.+.+..... +.
T Consensus 74 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-----~~~~~~~~~~~-~~ 145 (183)
T 2fu5_C 74 --TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS-----KERGEKLALDY-GI 145 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC-----HHHHHHHHHHH-TC
T ss_pred --HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCC-----HHHHHHHHHHc-CC
Confidence 11257899999999999986543333 355666654 68999999999997654332 12222333323 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|.+|.+.+
T Consensus 146 ~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 146 KFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EEEECCC---CCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 54
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.80 E-value=2.7e-19 Score=168.23 Aligned_cols=162 Identities=13% Similarity=0.133 Sum_probs=113.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||++++++... .....+++.+.....+.. ++. .+.+|||||+.++....
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~---------- 95 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLR---------- 95 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTTTG----------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhhHHHH----------
Confidence 356899999999999999999997643 233445555555545443 444 45599999997754321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhhH-------HHHHHHHH
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTAT-------YYEQDVRE 516 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~-------~~~~~~~~ 516 (549)
..+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+.......... ....+...
T Consensus 96 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 96 ----PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp ----GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred ----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 1257899999999999986655554 366667666 89999999999997643211000 00123344
Q ss_pred HHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 517 KLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 517 ~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.....+..+++++||++|.||+++|++|.+.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 45555656799999999999999999998764
No 55
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.80 E-value=2.1e-19 Score=164.39 Aligned_cols=158 Identities=16% Similarity=0.075 Sum_probs=107.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC--CCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++... .....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~----------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM----------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch-----------
Confidence 346899999999999999999997643 222233444455444554433 258999999999764321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh-----CCc-EEEEEecccCCCCCchhhhHHHHHHHHHHHhc
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE-----GKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~-----~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~ 520 (549)
...+++.+|++++|+|++++.+.+.. .|+..+... +.| +++|+||+|+...+.... +...+....
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~-----~~~~~~~~~ 144 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP-----EKHLRFCQE 144 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH-----HHHHHHHHH
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH-----HHHHHHHHH
Confidence 22367999999999999886544333 355555542 566 789999999975433221 122222222
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
. +.+++++||++|.||+++|++|.+.+
T Consensus 145 ~-~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 145 N-GFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp H-TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred c-CCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 35899999999999999999998754
No 56
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.80 E-value=6.8e-19 Score=159.83 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=106.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++..... ..|.+ ......+.+ ++..+.+|||||+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-------------- 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT--TIPTI--GFNVETVTY-KNLKFQVWDLGGLTSIRPY-------------- 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC--CCCCS--SEEEEEEEE-TTEEEEEEEECCCGGGGGG--------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC--cCCcC--ccceEEEEE-CCEEEEEEECCCChhhhHH--------------
Confidence 4689999999999999999999875432 22222 222223332 4778999999999765321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+....... ++...+........+.+
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS---EMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---HHHHHHTGGGCTTSCEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHH---HHHHHhCchhccCCceE
Confidence 11256899999999999987554433 34444433 479999999999997653321 12222221111223347
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 57
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=3.7e-19 Score=174.94 Aligned_cols=161 Identities=24% Similarity=0.366 Sum_probs=121.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.. +.+...+|+|.+.....+.. ++..+.+|||||+.++.. ......+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~------~~~~~~~~~ 74 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTA------HSIDELIAR 74 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCS------SCHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCcccccc------CCHHHHHHH
Confidence 4589999999999999999999875 57888999999987777764 667899999999987532 111222333
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhC-CcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEE
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 529 (549)
.+...+.+|++++|+|+++. .....++..+.+.+ +|+++|+||+|+......... ...+.+.+ +.+++++
T Consensus 75 ~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~l----g~~~~~~ 145 (271)
T 3k53_A 75 NFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKID---IKKMRKEL----GVPVIPT 145 (271)
T ss_dssp HHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCC---HHHHHHHH----SSCEEEC
T ss_pred HhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHH---HHHHHHHc----CCcEEEE
Confidence 33234789999999999984 45666777777777 999999999998643222211 23333333 3689999
Q ss_pred ccccCCCHHHHHHHHHhhh
Q 008909 530 TAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 530 SA~~g~~v~~L~~~l~~~~ 548 (549)
||++|.|+++|++.+.+.+
T Consensus 146 Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 9999999999999997753
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.80 E-value=1.5e-18 Score=162.30 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=109.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-C-----------------------------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-G----------------------------- 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~----------------------------- 419 (549)
...+|+++|.+|+|||||+|++++... .....++++.+.....+...+ .
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 356899999999999999999998753 333344444444444443322 1
Q ss_pred --------CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-hCCcE
Q 008909 420 --------QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-EGKGC 489 (549)
Q Consensus 420 --------~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-~~~p~ 489 (549)
..+.+|||||+.++.. ....+++.+|++++|+|++++.+.++. .|+..+.. .+.|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pi 150 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS--------------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYII 150 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT--------------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred cccCccceeEEEEEECCCcHHHHH--------------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 5789999999866432 133467899999999999986554443 35555655 46899
Q ss_pred EEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 490 LIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 490 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++|+||+| ....... .+.+.+.+... +.+++++||++|.|++++|++|.+.+
T Consensus 151 ilv~NK~D-~~~~~~~-----~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 151 ILVANKID-KNKFQVD-----ILEVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EEEEECTT-CC-CCSC-----HHHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEECCC-cccccCC-----HHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999 3322222 23334444444 35999999999999999999997653
No 59
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.80 E-value=4.7e-19 Score=162.48 Aligned_cols=160 Identities=21% Similarity=0.230 Sum_probs=104.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC--CCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL----------- 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh-----------
Confidence 35689999999999999999999865 3333344444555554554432 347899999998664321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~ 519 (549)
...+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+........ ...+.+...
T Consensus 75 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~----~~~~~~~~~ 147 (182)
T 1ky3_A 75 ---GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVS----EKSAQELAK 147 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSC----HHHHHHHHH
T ss_pred ---hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCC----HHHHHHHHH
Confidence 22356899999999999886443333 34444443 4689999999999964322111 122333333
Q ss_pred cCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 520 ALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 520 ~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.....+++++||++|.||+++|++|.+.+
T Consensus 148 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 148 SLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999997653
No 60
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.80 E-value=1.6e-19 Score=175.56 Aligned_cols=158 Identities=25% Similarity=0.312 Sum_probs=115.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
++|+++|.+|||||||+|+|+|.. ..+++.+++|.+...+.+.+++..+.+|||||+.++.......
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~------------ 68 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGI------------ 68 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCC------------
Confidence 689999999999999999999986 6788999999999999999999999999999998754321000
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
.... .....++ ..+|++|+|+|++. ......+..++... +.|+++|+||+|+......
T Consensus 69 -------------~~~e---~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~~~~ 128 (256)
T 3iby_A 69 -------------SQDE---QIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFEL--GKPVVVALNMMDIAEHRGI 128 (256)
T ss_dssp -------------CHHH---HHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTS--CSCEEEEEECHHHHHHTTC
T ss_pred -------------CHHH---HHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHc--CCCEEEEEEChhcCCcCCc
Confidence 0000 1122333 67999999999876 22233344455544 8999999999998654311
Q ss_pred --hH-HHHHHcCCCceEeeccCCCChhhhHHHHHHH
Q 008909 322 --QV-SEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 322 --~~-~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.. .-....+++++++||++|.|++++++.+.+.
T Consensus 129 ~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 129 SIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 11 1122357899999999999999999998654
No 61
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=6e-19 Score=162.47 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=107.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||++++++.......+..|.+.. .+. .++..+.+|||||+.++..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~-~~~~~l~i~Dt~G~~~~~~-------------- 75 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQ-SQGFKLNVWDIGGQRKIRP-------------- 75 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEE-ETTEEEEEEECSSCGGGHH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEE-ECCEEEEEEECCCCHHHHH--------------
Confidence 356899999999999999999998765444444454322 222 2467899999999965421
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+....... ++.+.+..........
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~ 152 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS---EIAEGLNLHTIRDRVW 152 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHH---HHHHHTTGGGCCSSCE
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHH---HHHHHhCchhccCCce
Confidence 233467999999999999986544433 34444432 478999999999997653321 1111111111112234
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 153 QIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998754
No 62
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.80 E-value=1.1e-18 Score=157.50 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=104.4
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+|||||+|++++..... ..| |.......+. .++..+.+|||||+.++.. ...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~--------------~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVE-YKNISFTVWDVGGQDKIRP--------------LWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEE-CSSCEEEEEECCCCGGGHH--------------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEE-ECCEEEEEEEcCCChhhHH--------------HHH
Confidence 68999999999999999998765332 233 2222233343 3568899999999965321 123
Q ss_pred HHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+...... .++...+..........+++
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~ 139 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQ 139 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccEEEE
Confidence 367999999999999986443333 34554443 27899999999999764321 11222211111112234799
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|++++|++|.+.+
T Consensus 140 ~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 140 ATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC
T ss_pred EcccCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
No 63
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=7e-19 Score=159.66 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=103.1
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (549)
.+|+++|.+|+|||||+|++++... .....+..................+.+|||||+.++.. ..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------------~~ 68 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA--------------MQ 68 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC-CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH--------------HH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHH--------------HH
Confidence 5899999999999999999998643 22222322222111111111234689999999966421 12
Q ss_pred HHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 452 FRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 452 ~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
..+++.+|++++|+|++++.+.+. ..++..+.+. +.|+++|+||+|+...+.... .......... +.+
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~-----~~~~~~~~~~-~~~ 142 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS-----SEAEALARTW-KCA 142 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH-----HHHHHHHHHH-TCE
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH-----HHHHHHHHHh-CCe
Confidence 336788999999999987543332 3355555542 689999999999975443321 1111222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 143 FMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp EEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 64
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.80 E-value=8.4e-19 Score=164.72 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=111.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++... .....++++.+.....+...+ ...+.+|||||+.++....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------- 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH-----------
Confidence 356899999999999999999998753 334455555666555555422 2478999999997654321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~ 520 (549)
..+++.+|++|+|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+... ... .+.+.+....
T Consensus 75 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~-----~~~~~~~~~~ 145 (207)
T 1vg8_A 75 ---VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVA-----TKRAQAWCYS 145 (207)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSC-----HHHHHHHHHH
T ss_pred ---HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccC-----HHHHHHHHHh
Confidence 1257899999999999876443333 34444433 36899999999999732 221 1223333333
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+.+++++||++|.|++++|++|.+.+
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999997653
No 65
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.80 E-value=7.1e-19 Score=160.85 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=107.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.... ....+.++.+.....+... ....+.+|||||+.++..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 79 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA------------- 79 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH-------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh-------------
Confidence 3568999999999999999999987532 2222222323222233222 234789999999865421
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+....... .+.+.+.+... +.
T Consensus 80 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~ 152 (179)
T 1z0f_A 80 -VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT-----YEEAKQFAEEN-GL 152 (179)
T ss_dssp -HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-----HHHHHHHHHHT-TC
T ss_pred -hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC-----HHHHHHHHHHc-CC
Confidence 234467999999999999986443333 35555554 478999999999996543322 12233344433 36
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|++++|++|.+.+
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 153 LFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998754
No 66
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=6.4e-19 Score=159.72 Aligned_cols=157 Identities=21% Similarity=0.246 Sum_probs=108.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCe-eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.... ...+..|++.......+. .....+.+|||||+.++...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~------------- 71 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRAL------------- 71 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGG-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhhcc-------------
Confidence 468999999999999999999987532 123334444433332221 12457899999999664321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+.. .|+..+... ..|+++|+||+|+....... .+......... +.+
T Consensus 72 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~-----~~~~~~~~~~~-~~~ 144 (170)
T 1z0j_A 72 -APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM-----ERDAKDYADSI-HAI 144 (170)
T ss_dssp -THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSC-----HHHHHHHHHHT-TCE
T ss_pred -cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccC-----HHHHHHHHHHc-CCE
Confidence 22367899999999999886554443 455666654 57899999999997543322 12222333333 368
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++||++|.+.+
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 67
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.79 E-value=8.2e-19 Score=172.77 Aligned_cols=162 Identities=24% Similarity=0.340 Sum_probs=113.4
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hHHHHH-HcCCCceEeeccCC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAISG 341 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~-~~~~~~v~vSA~~g 341 (549)
+++.+.+.++|++++|+|++.|.+..+..+.+++ .++|.++|+||+|+.+.... ....++ ..+++++++||+++
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNG 90 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCc
Confidence 5777889999999999999998887765555554 37999999999999875432 233444 35788999999999
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCe
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~ 421 (549)
.|+.++++.+.+.+.................+++++|.+|+||||++|++++.....++..||+|++...... +..
T Consensus 91 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 166 (282)
T 1puj_A 91 QGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GKE 166 (282)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----TTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----CCC
Confidence 9999999988777653321100011123456899999999999999999999888889999999998753322 457
Q ss_pred EEEEeCCCccch
Q 008909 422 FRLIDTAGIRKR 433 (549)
Q Consensus 422 i~l~DTpG~~~~ 433 (549)
+.++||||+...
T Consensus 167 ~~l~DtpG~~~~ 178 (282)
T 1puj_A 167 LELLDTPGILWP 178 (282)
T ss_dssp EEEEECCCCCCS
T ss_pred EEEEECcCcCCC
Confidence 999999999754
No 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=9e-19 Score=158.16 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=104.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++... .....+++.+.....+...+ ...+.+|||||+.++..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------------- 67 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-------------- 67 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH--------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHH--------------
Confidence 35899999999999999999998753 22333344444433333322 24789999999865421
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.... .++..+... ++|+++|+||+|+....... .+++.+.+... +.
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~ 141 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-----VEEAKNRADQW-NV 141 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC-----HHHHHHHHHHH-TC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC-----HHHHHHHHHHc-CC
Confidence 223467899999999999975443333 344555442 78999999999997543322 12222333322 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|++++|++|.+.+
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 142 NYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998753
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.79 E-value=5.6e-19 Score=165.52 Aligned_cols=161 Identities=13% Similarity=0.117 Sum_probs=109.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++... .....++++.+... .+...+ ...+.+|||||+.++....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~------------ 90 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLR------------ 90 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTG------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHH------------
Confidence 45899999999999999999998653 33334444444332 233222 2478999999997653211
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh-------HHHHHHHHHHH
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-------TYYEQDVREKL 518 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-------~~~~~~~~~~l 518 (549)
..+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+......... ....++..+..
T Consensus 91 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 91 --PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred --HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 1257899999999999875444443 466666665 8999999999999764211000 00012233444
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
...+..+++++||++|.||++||++|.+.
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 169 NRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 44444589999999999999999999875
No 70
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.79 E-value=8.6e-19 Score=162.51 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=108.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeee-EEEEeccC----------CCeEEEEeCCCccchhhhcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAI-DTEFTGPE----------GQKFRLIDTAGIRKRAAIAS 438 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~-~~~~~~~~----------~~~i~l~DTpG~~~~~~~~~ 438 (549)
...+|+++|.+|+|||||+|++++... .....+..+.+.. ...+...+ ...+.+|||||+.++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--- 85 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS--- 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH---
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH---
Confidence 346899999999999999999998653 2333444444443 22333222 24799999999965421
Q ss_pred CCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHH
Q 008909 439 SGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQD 513 (549)
Q Consensus 439 ~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 513 (549)
....+++.+|++++|+|++++.+.+. ..++..+.. .++|+++|+||+|+....... .+.
T Consensus 86 -----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~ 149 (195)
T 3bc1_A 86 -----------LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK-----EEE 149 (195)
T ss_dssp -----------HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC-----HHH
T ss_pred -----------HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-----HHH
Confidence 23446789999999999988654444 345555555 478999999999997543322 122
Q ss_pred HHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 514 VREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 514 ~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.+..... +.+++++||++|.|++++|++|.+.+
T Consensus 150 ~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKY-GIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 22333322 35899999999999999999997653
No 71
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.79 E-value=3.8e-19 Score=160.87 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=108.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------- 70 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI------------- 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-------------
Confidence 4689999999999999999999864 3334444444555444444322 347999999998664321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (549)
...+++.+|++++|+|++++.+.+.. .++..+... +.|+++|+||+|+...+... .+.+.+..... +.++
T Consensus 71 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~~ 143 (168)
T 1z2a_A 71 -TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK-----NEEAEGLAKRL-KLRF 143 (168)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC-----HHHHHHHHHHH-TCEE
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC-----HHHHHHHHHHc-CCeE
Confidence 22367899999999999875433332 355555443 79999999999997543322 12222233322 3589
Q ss_pred EEEccccCCCHHHHHHHHHhhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++||++|.|+++++++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998653
No 72
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.6e-18 Score=160.35 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=105.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.......+..|.+. ..+.. ++..+.+|||||+.++...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~-~~~~~~i~Dt~G~~~~~~~------------- 76 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVI-NNTRFLMWDIGGQESLRSS------------- 76 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEE-TTEEEEEEECCC----CGG-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEE-CCEEEEEEECCCCHhHHHH-------------
Confidence 35689999999999999999999776544433333222 22322 5688999999999765321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh----c
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR----A 520 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~----~ 520 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...... .++.+.+. .
T Consensus 77 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~i~~~~~~~~~~ 148 (187)
T 1zj6_A 77 -WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-------AEISQFLKLTSIK 148 (187)
T ss_dssp -GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHHTGGGCC
T ss_pred -HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCH-------HHHHHHhChhhhc
Confidence 12357899999999999987554443 35555554 47999999999999754321 11222222 1
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+.+++++||++|.|+++++++|.+.+
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 149 DHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp SSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 2234899999999999999999998764
No 73
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.79 E-value=7.1e-19 Score=161.87 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=108.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.......+..|.+.. .+.. ++..+.+|||||+.++...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~-~~~~~~i~Dt~G~~~~~~~------------- 81 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVI-NNTRFLMWDIGGQESLRSS------------- 81 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEE-TTEEEEEEEESSSGGGTCG-------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEE-CCEEEEEEECCCCHhHHHH-------------
Confidence 456899999999999999999998765444555554332 2222 5688999999999765321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh----c
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR----A 520 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~----~ 520 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+...... .++.+.+. .
T Consensus 82 -~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~i~~~~~~~~~~ 153 (181)
T 2h17_A 82 -WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-------AEISQFLKLTSIK 153 (181)
T ss_dssp -GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCC
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH-------HHHHHHhCccccc
Confidence 12257899999999999987554443 34555543 57999999999999764322 12222221 1
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
..+.+++++||++|.|++++|++|.+.
T Consensus 154 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 154 DHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp SSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 223479999999999999999999864
No 74
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.79 E-value=4.5e-19 Score=160.72 Aligned_cols=156 Identities=22% Similarity=0.171 Sum_probs=104.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI------------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-------------
Confidence 3589999999999999999999875 3344555666665555555422 247899999998764321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+... ..++..+... +.|+++|+||+|+... ... .+...+..... +.+
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~-----~~~~~~~~~~~-~~~ 140 (170)
T 1g16_A 69 -TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVT-----ADQGEALAKEL-GIP 140 (170)
T ss_dssp -CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-CSC-----HHHHHHHHHHH-TCC
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC-ccC-----HHHHHHHHHHc-CCe
Confidence 2236789999999999987544333 2455555553 7899999999999432 221 11222222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 141 ~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 141 FIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998753
No 75
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.79 E-value=1.2e-18 Score=161.92 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=106.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++++.......+..+. ....+.. ++..+.+|||||+.++...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~~-~~~~~~i~Dt~G~~~~~~~-------------- 83 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELAI-GNIKFTTFDLGGHIQARRL-------------- 83 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEEE-TTEEEEEEECCCSGGGTTS--------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEEE-CCEEEEEEECCCCHHHHHH--------------
Confidence 45899999999999999999998754333222232 2333433 5688999999999765321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc-----
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~----- 520 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+..... .+++.+.+..
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~ 156 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS-------EAELRSALGLLNTTG 156 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-------HHHHHHHTTCSSCCC
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCC-------HHHHHHHhCCccccc
Confidence 11246899999999999986554443 34555443 4799999999999975221 1233344332
Q ss_pred ------CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 ------LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ------~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....+++++||++|.||+++|++|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 157 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp ---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 2345799999999999999999998753
No 76
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.79 E-value=5.2e-19 Score=162.91 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=108.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++... . .....++.+.....+...+ ...+.+|||||+.++....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------ 70 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR------------ 70 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-C-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTG------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-C-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHH------------
Confidence 46899999999999999999997642 2 2223344343333333211 3467799999997653211
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh-------HHHHHHHHHHH
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-------TYYEQDVREKL 518 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-------~~~~~~~~~~l 518 (549)
..+++.+|++++|+|++++.+.++. .|+..+... +.|+++|+||+|+......... ........+..
T Consensus 71 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 71 --PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred --HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 1246899999999999986555554 366666665 8999999999999754210000 00012223333
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
...+..+++++||++|.|+++||++|.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 149 KEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 334444899999999999999999998754
No 77
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=6.4e-19 Score=159.59 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=106.5
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||+|++++... .....+..+.+.....+... ....+.+|||||+.++.. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------------~ 68 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS--------------L 68 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------------G
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh--------------h
Confidence 5799999999999999999998653 22333444444333333322 234789999999866432 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCc-hhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKN-QQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.... .++..+... +.|+++|+||+|+..... .... .+...+.... .+.+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~-~~~~ 144 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVA---REEGEKLAEE-KGLL 144 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSC---HHHHHHHHHH-HTCE
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCC---HHHHHHHHHH-cCCE
Confidence 23467999999999999986444443 355555543 789999999999975421 1111 1112222222 2358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 145 FFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 78
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.79 E-value=5.6e-19 Score=161.53 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=110.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------- 79 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------- 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH-------------
Confidence 3689999999999999999999765 3344556666666555554322 247899999998765321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...+.... ....+..... +.+
T Consensus 80 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~~ 152 (179)
T 2y8e_A 80 -IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST-----EEGERKAKEL-NVM 152 (179)
T ss_dssp -SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH-----HHHHHHHHHH-TCE
T ss_pred -HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH-----HHHHHHHHHc-CCe
Confidence 12357899999999999875433322 35555544 3789999999999975433221 1122222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|++|.+.+
T Consensus 153 ~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 153 FIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 79
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.79 E-value=1.3e-18 Score=160.70 Aligned_cols=154 Identities=15% Similarity=0.106 Sum_probs=108.6
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhh
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
....+|+++|.+|+|||||++++++.... ....+ + .+.....+.. ++ ..+.+|||||+.++.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~-t-~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~------------ 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP-E-GGRFKKEIVV-DGQSYLLLIRDEGGPPELQ------------ 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT-T-CEEEEEEEEE-TTEEEEEEEEECSSSCCHH------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC-C-cceEEEEEEE-CCEEEEEEEEECCCChhhh------------
Confidence 34569999999999999999999986532 22223 2 2222233333 34 467789999996531
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~ 521 (549)
+++.+|++++|+|++++.+.+. ..|+..+... +.|+++|+||+|+......... .+.+.+.....
T Consensus 82 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~---~~~~~~~~~~~ 151 (184)
T 3ihw_A 82 -------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVID---DSRARKLSTDL 151 (184)
T ss_dssp -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSC---HHHHHHHHHHT
T ss_pred -------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccC---HHHHHHHHHHc
Confidence 5788999999999998765555 4466666653 6899999999998532221111 23344455555
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+..+++++||++|.||+++|++|.+.+
T Consensus 152 ~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 152 KRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 557899999999999999999998753
No 80
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.79 E-value=2.9e-19 Score=188.32 Aligned_cols=160 Identities=31% Similarity=0.459 Sum_probs=123.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEccccc-ccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~i~~~~~~ 241 (549)
.++|+|+|++|||||||+|+|++.....+.+++++|.+.....+.++|.++.+|||||+. .+...-+.+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~---------- 312 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERL---------- 312 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCC----------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHH----------
Confidence 368999999999999999999998777889999999999999999999999999999997 433211110
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChh-hH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-GI 320 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~-~~ 320 (549)
| .+.+..++..+|++|+|+|++.+.+..+.++.+.+ .++|+++|+||+|+... ..
T Consensus 313 ---g-----------------i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~ 368 (482)
T 1xzp_A 313 ---G-----------------IERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINE 368 (482)
T ss_dssp ---C-----------------HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCH
T ss_pred ---H-----------------HHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCH
Confidence 0 02345678899999999999887776665555444 37899999999999653 11
Q ss_pred HhHHHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 MQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ~~~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.....+...+.+++++||++|.|++++++.+.+.+.
T Consensus 369 ~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 369 EEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 122222233458899999999999999999987654
No 81
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.79 E-value=5.5e-19 Score=163.71 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=107.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.... ....++.+.+.....+.. ..+..+.+|||||+.++...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------ 87 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI------------ 87 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh------------
Confidence 3568999999999999999999987532 222333333332222222 12457899999999765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+...+.... +.+.+..... +.
T Consensus 88 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~ 159 (189)
T 2gf9_A 88 --TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPA-----EDGRRLADDL-GF 159 (189)
T ss_dssp --GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-----HHHHHHHHHH-TC
T ss_pred --HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCH-----HHHHHHHHHc-CC
Confidence 12257899999999999875443333 466666664 789999999999975433221 1222222222 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|+++||++|.+.+
T Consensus 160 ~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 160 EFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998753
No 82
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.79 E-value=9.1e-19 Score=164.60 Aligned_cols=158 Identities=20% Similarity=0.165 Sum_probs=111.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 74 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT----------- 74 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH-----------
Confidence 34689999999999999999999875 3344455555555444444322 2479999999997754321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
..+++.+|++++|+|++++.+.+... |+..+... +.|++||+||+|+...+... .+...+..... +.
T Consensus 75 ---~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~ 145 (206)
T 2bcg_Y 75 ---SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE-----YDVAKEFADAN-KM 145 (206)
T ss_dssp ---GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC-----HHHHHHHHHHT-TC
T ss_pred ---HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC-----HHHHHHHHHHc-CC
Confidence 12578999999999998865444433 55555543 58999999999997654332 12222333333 46
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 146 ~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 146 PFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 83
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=9.1e-19 Score=184.42 Aligned_cols=163 Identities=25% Similarity=0.305 Sum_probs=98.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+|+|++|||||||+|+|++.....+++.+++|.+.....+.++|.++.+|||||+.++....+ .+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve----~~------- 301 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIE----HE------- 301 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHH----HH-------
Confidence 3569999999999999999999987778899999999999999999999999999999976332111 00
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
..+.+..++..+|++|+|+|++.+.+..... ...++.. ..+.|+++|+||+|+......
T Consensus 302 -------------------gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 302 -------------------GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADA 361 (476)
T ss_dssp -------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHH
T ss_pred -------------------HHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccch
Confidence 0123345678899999999999877664322 2233333 237999999999999765443
Q ss_pred hHHHHHHc-CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 322 QVSEFWSL-GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 322 ~~~~~~~~-~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
....+... ..+++++||++|.|++++++.+.+.+.
T Consensus 362 ~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 362 LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 32222222 257899999999999999999988775
No 84
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=1.2e-18 Score=161.15 Aligned_cols=161 Identities=24% Similarity=0.371 Sum_probs=115.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.. +.+...+++|.+.....+.. ++..+.+|||||+.++... .....+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~------~~~~~~~~ 78 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTAN------SIDEIIAR 78 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSS------SHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCccccc------cHHHHHHH
Confidence 4589999999999999999999865 56677888888877666654 5788999999999775311 01111222
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
.+-....+|++++|+|+++ ......++..+...+.|+++|+||+|+........ ....+.+.+ +.+++++|
T Consensus 79 ~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~----~~~~~~~S 149 (188)
T 2wjg_A 79 DYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI---DVDKLEKIL----GVKVVPLS 149 (188)
T ss_dssp HHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCC---CHHHHHHHH----TSCEEECB
T ss_pred HHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchH---HHHHHHHHh----CCCeEEEE
Confidence 2211246999999999986 23445577777778899999999999864322211 012222222 35899999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|+++||+++.+.+
T Consensus 150 a~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAV 167 (188)
T ss_dssp GGGTBSHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHH
Confidence 999999999999998764
No 85
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=163.42 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=109.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||++++++.. ......++++.+.....+...+ ...+.+|||||+.++.. . +
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----------~-~ 89 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG----------W-L 89 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH----------H-H
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh----------h-h
Confidence 45689999999999999999998643 2234456666666555554322 23678999999965321 0 1
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++++|+|++++.+.... .|+..+.. .++|+++|+||+|+...+.... +...+..... +
T Consensus 90 --~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-----~~~~~~a~~~-~ 161 (195)
T 3cbq_A 90 --RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL-----EEGRHLAGTL-S 161 (195)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH-----HHHHHHHHHT-T
T ss_pred --HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH-----HHHHHHHHHh-C
Confidence 12357899999999999875443333 35555655 2789999999999976544321 1222233333 3
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|.+.+
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998653
No 86
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=4.6e-19 Score=166.24 Aligned_cols=157 Identities=18% Similarity=0.113 Sum_probs=109.5
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||++++++.. +.....++++.+.....+...+ ...+.+|||||+.++..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS------------- 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-------------
Confidence 35689999999999999999999864 3344555556665554554322 24789999999966432
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+...+.... +...+.... .+.
T Consensus 91 -~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~-----~~~~~~~~~-~~~ 163 (201)
T 2ew1_A 91 -ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQ-----QRAEEFSEA-QDM 163 (201)
T ss_dssp -HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCH-----HHHHHHHHH-HTC
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH-----HHHHHHHHH-cCC
Confidence 122357899999999999875443332 355555543 689999999999975433221 112222222 236
Q ss_pred CEEEEccccCCCHHHHHHHHHhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++++||++|.||+++|++|.+.
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 164 YYLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998764
No 87
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.79 E-value=6.3e-19 Score=159.79 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=100.3
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||++++++..... ...+.++.+.....+...+ ...+.+|||||+.++... .
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------------~ 68 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW-------------L 68 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------------h
Confidence 579999999999999999998754332 2233344555444444322 347889999999764310 0
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+.. .++..+... ++|+++|+||+|+...+... .+...+..... +.+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~~ 142 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS-----LEEGRHLAGTL-SCK 142 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC-----HHHHHHHHHHT-TCE
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC-----HHHHHHHHHHc-CCc
Confidence 11246789999999999885433333 355555553 78999999999997544332 12223333333 459
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|++++|+++.+.+
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 143 HIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCccCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 88
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=164.63 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=106.5
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhh
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
....+|+++|.+|+|||||++++++.. + .....+|+.+.....+.. ++ ..+.+|||||+.++..+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------- 85 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG-Y-PTEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLR--------- 85 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSG---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHh---------
Confidence 345689999999999999999999865 3 233444555555444443 34 367799999997754311
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCc----------hhhhHHHHH
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKN----------QQTATYYEQ 512 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~ 512 (549)
..+++.+|++++|+|++++.+..+. .|+..+... +.|+++|+||+|+..... .... .+
T Consensus 86 -----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~---~~ 157 (201)
T 2q3h_A 86 -----PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVP---EE 157 (201)
T ss_dssp -----GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCC---HH
T ss_pred -----HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCC---HH
Confidence 1257899999999999986555554 366666664 799999999999975311 0111 12
Q ss_pred HHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 513 DVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.........+..+++++||++|.||+++|++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 158 AAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 222333333434899999999999999999987653
No 89
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=163.51 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=107.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.... ....+..+.+.....+... .+..+.+|||||+.++..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------------- 72 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT-------------- 72 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH--------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc--------------
Confidence 468999999999999999999987532 2223333333322233222 245789999999966432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
....+++.+|++|+|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+........ ..+.+..... +.+
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~~ 146 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS-----ERGRQLADHL-GFE 146 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH-----HHHHHHHHHH-TCE
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCH-----HHHHHHHHHC-CCe
Confidence 133467899999999999876443333 35566655 3789999999999976443321 1222222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||+++|++|.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997653
No 90
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.79 E-value=1e-18 Score=157.69 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=104.3
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||+|++++.... .....++.+.....+...+ ...+.+|||||+.++.. .
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------------~ 67 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS--------------M 67 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH--------------H
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH--------------H
Confidence 58999999999999999999986532 2222333333333333322 23589999999866422 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...+.... ....+..... +.+
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~~~ 141 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS-----SEGRALAEEW-GCP 141 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH-----HHHHHHHHHH-TSC
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCH-----HHHHHHHHHh-CCC
Confidence 23357899999999999875443333 34444443 3799999999999865433221 1122222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++|+++|.+.+
T Consensus 142 ~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 142 FMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 91
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=1.3e-18 Score=162.30 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=106.5
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
.+..+|+++|.+|+|||||++++.+............+.......+.......+.+|||||+.++.... .
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~----- 87 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----F----- 87 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----C-----
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----h-----
Confidence 345799999999999999999988752221111112222222222222345689999999997753210 0
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHH-----hCCcEEEEEecccCCCCCch-hhhHHHHHHHHHHHhc--
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ-----EGKGCLIVVNKWDTIPNKNQ-QTATYYEQDVREKLRA-- 520 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~-----~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~l~~-- 520 (549)
....+++.+|++|+|+|+++++......+..++.+ .+.|+++|+||+|+...... .....+.....+.+..
T Consensus 88 -~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 88 -DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp -CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 00246789999999999998733333444444443 27999999999998753211 1111122223333443
Q ss_pred --CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 --LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 --~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+.+++++||++ .||+++|..|.+.+
T Consensus 167 ~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 3456899999999 99999999998754
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=1.4e-18 Score=160.86 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=107.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.... ....+.+..+.. .+. ..+..+.+|||||+.++..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~--~~~-~~~~~~~l~Dt~G~~~~~~-------------- 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGFNMR--KIT-KGNVTIKLWDIGGQPRFRS-------------- 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEE--EEE-ETTEEEEEEEECCSHHHHT--------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCceeEE--EEE-eCCEEEEEEECCCCHhHHH--------------
Confidence 3568999999999999999999986532 222332222222 222 3577899999999965432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...... .++.+.+........+.
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREI 159 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCE
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCe
Confidence 123457999999999999876444433 34544443 47999999999999764321 11222221111122345
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||++||++|.+.+
T Consensus 160 ~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 160 CCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
No 93
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=161.86 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=107.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++..... ...+..+.+.....+.. ..+..+.+|||||+.++...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 90 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI------------ 90 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh------------
Confidence 35689999999999999999999875332 22232223322222222 23457899999999764321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++|+|+|++++.+... ..++..+... +.|+++|+||+|+...+... ........... +.
T Consensus 91 --~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~ 162 (193)
T 2oil_A 91 --TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP-----TEEARMFAENN-GL 162 (193)
T ss_dssp --HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHHT-TC
T ss_pred --hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC-----HHHHHHHHHHc-CC
Confidence 2336789999999999987544333 2355555543 68999999999997543322 12223333333 45
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|++++|++|.+.+
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 163 LFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987653
No 94
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=9.3e-19 Score=162.84 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=110.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||++++++.. +. ....+|+.+.....+.. ++ ..+.+|||||+.++....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~-~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---------- 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA-FP-EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLR---------- 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS-CC-CSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTTTG----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhHHH----------
Confidence 34689999999999999999999864 22 23334444444444443 33 478899999997754211
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCch----------hhhHHHHHH
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQ----------QTATYYEQD 513 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~----------~~~~~~~~~ 513 (549)
..+++.+|++++|+|++++.+.+.. .|+..+... ++|+++|+||+|+...... ... .++
T Consensus 84 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~ 156 (194)
T 2atx_A 84 ----PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPIC---VEQ 156 (194)
T ss_dssp ----GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCC---HHH
T ss_pred ----HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccC---HHH
Confidence 1257899999999999886544443 466777766 8999999999999764210 010 122
Q ss_pred HHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 514 VREKLRALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 514 ~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
..+.....+..+++++||++|.||+++|++|.+.
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 2333333343489999999999999999999765
No 95
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.79 E-value=8.3e-19 Score=161.75 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=109.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 74 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS------------- 74 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH-------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------------
Confidence 34689999999999999999999865 3334455556555444444322 24789999999865422
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+....... ..+..+..... +.
T Consensus 75 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~~ 147 (186)
T 2bme_A 75 -VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT-----FLEASRFAQEN-EL 147 (186)
T ss_dssp -HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHHT-TC
T ss_pred -HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC-----HHHHHHHHHHc-CC
Confidence 133457899999999999885443333 34444443 478999999999996543322 12223333333 46
Q ss_pred CEEEEccccCCCHHHHHHHHHhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++++||++|.|++++|++|.+.
T Consensus 148 ~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 148 MFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998764
No 96
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.79 E-value=1.2e-18 Score=182.52 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=118.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee------------------------------ecCCCCceeeeeEEEEeccCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPEG 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~~ 419 (549)
...+|+++|++|+|||||+++|++..... .....|+|++.....+.. ++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CC
Confidence 45689999999999999999997642211 112358899887777764 56
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCC-------HhHHHHHHHHHHhCCc-EEE
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACIT-------EQDCRIAERIEQEGKG-CLI 491 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~~l~~l~~~~~p-~iv 491 (549)
.++.+|||||+++| ...+..+++.+|++|+|||++++.. .+..+.+..+...++| +|+
T Consensus 95 ~~~~iiDTPGh~~f--------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 95 KHFTILDAPGHKSF--------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred eEEEEEECCChHHH--------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence 79999999999765 3345667899999999999998765 5788888888888888 999
Q ss_pred EEecccCCCCC-chhhhHHHHHHHHHHHhcCC-----CCCEEEEccccCCCHHHHHH
Q 008909 492 VVNKWDTIPNK-NQQTATYYEQDVREKLRALD-----WAPIVYSTAIAGQSVDKYVL 542 (549)
Q Consensus 492 v~NK~Dl~~~~-~~~~~~~~~~~~~~~l~~~~-----~~~~i~iSA~~g~~v~~L~~ 542 (549)
|+||+|+.... .....+.+.+++...++..+ ..+++++||++|.|++++.+
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999996422 12223344555666665544 35799999999999999544
No 97
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.79 E-value=5.5e-19 Score=167.42 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=109.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||++++++... .....+.+..+ ....+... ....+.+|||||+.++..+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------- 92 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFEN-YTACLETEEQRVELSLWDTSGSPYYDNVR----------- 92 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEE-EEEEEEC--CEEEEEEEEECCSGGGTTTG-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeee-EEEEEEECCEEEEEEEEECCCCHhHHHHH-----------
Confidence 456899999999999999999998753 23333333333 33333322 23478999999997754321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhH--HHHHHHHHHh--CCcEEEEEecccCCCC------------CchhhhHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQD--CRIAERIEQE--GKGCLIVVNKWDTIPN------------KNQQTATYYEQ 512 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~l~~l~~~--~~p~ivv~NK~Dl~~~------------~~~~~~~~~~~ 512 (549)
..+++.+|++|+|+|++++.+.+. ..|+..+... +.|+++|+||+|+... +... .+
T Consensus 93 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~-----~~ 164 (214)
T 3q3j_B 93 ---PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPIS-----YE 164 (214)
T ss_dssp ---GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCC-----HH
T ss_pred ---HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccC-----HH
Confidence 125789999999999998655555 3466777765 7899999999999653 1111 12
Q ss_pred HHHHHHhcCCCCCEEEEccccCCC-HHHHHHHHHhhh
Q 008909 513 DVREKLRALDWAPIVYSTAIAGQS-VDKYVLYLATSF 548 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g~~-v~~L~~~l~~~~ 548 (549)
...+.....+..++++|||++|.| |++||+.|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 165 QGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 233333333434899999999998 999999998753
No 98
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.79 E-value=2.1e-18 Score=158.84 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=108.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++... .....+++.+.....+...+ ...+.+|||||+.++..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------------- 81 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-------------- 81 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHH--------------
Confidence 46899999999999999999998753 23334444444444443322 24789999999866422
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+.. .++..+... ++|+++|+||+|+....... ..++.+.+...+ .
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~-~ 155 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-----VEEAKNRAEQWN-V 155 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC-----HHHHHHHHHHTT-C
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-----HHHHHHHHHHcC-C
Confidence 123467899999999999875443333 344444442 78999999999997543322 223334444443 5
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 156 NYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 99
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.79 E-value=7.6e-19 Score=163.43 Aligned_cols=158 Identities=15% Similarity=0.077 Sum_probs=104.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecC---------CCCceeeeeEEEEeccC--CCeEEEEeCCCccchhhhcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSP---------ISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIAS 438 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~---------~~gtt~~~~~~~~~~~~--~~~i~l~DTpG~~~~~~~~~ 438 (549)
...+|+++|.+|+|||||++.+.+........ .+....+.....+...+ ...+.+|||||+.++..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 35689999999999999998877643211110 11111121111110112 34689999999976532
Q ss_pred CCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHH----HHHH-----hCCcEEEEEecccCCCCCchhhhHH
Q 008909 439 SGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAE----RIEQ-----EGKGCLIVVNKWDTIPNKNQQTATY 509 (549)
Q Consensus 439 ~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~----~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 509 (549)
....+++.+|++|+|+|++++...++...+. ++.. .+.|+++|+||+|+.....
T Consensus 90 -----------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~------ 152 (198)
T 3t1o_A 90 -----------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP------ 152 (198)
T ss_dssp -----------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC------
T ss_pred -----------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC------
Confidence 1223679999999999999765444444333 3333 4789999999999976422
Q ss_pred HHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 510 YEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 510 ~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++.+.+...+..+++++||++|.||+++|++|.+.+
T Consensus 153 -~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 153 -VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 23445555555544999999999999999999998753
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.79 E-value=1.1e-18 Score=161.20 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=106.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.. .....|.+. .....+.. ++..+.+|||||+.++...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~--~~~~~~~~-~~~~~~~~Dt~G~~~~~~~------------- 78 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISPTLG--FNIKTLEH-RGFKLNIWDVGGQKSLRSY------------- 78 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCCSS--EEEEEEEE-TTEEEEEEEECCSHHHHTT-------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccccCc--cceEEEEE-CCEEEEEEECCCCHhHHHH-------------
Confidence 35689999999999999999999876 222222211 22223332 5778999999999664321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh----c
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR----A 520 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~----~ 520 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...... ..+.+.+. .
T Consensus 79 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~ 150 (186)
T 1ksh_A 79 -WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC-------NAIQEALELDSIR 150 (186)
T ss_dssp -GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCC
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH-------HHHHHHhChhhcc
Confidence 12256899999999999986554443 35555543 37999999999999765332 12222222 1
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+.+++++||++|.|++++|++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 151 SHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2345899999999999999999998754
No 101
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=164.63 Aligned_cols=156 Identities=23% Similarity=0.202 Sum_probs=109.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+.. ++ ..+.+|||||+.++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~----------- 85 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI----------- 85 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-----------
Confidence 35689999999999999999999865 33455566666665555543 34 57899999999765321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++++|+|++++.+.+. ..|+..+... +.|+++|+||+|+.. .... .....+..... +
T Consensus 86 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~-----~~~~~~~~~~~-~ 155 (213)
T 3cph_A 86 ---TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVT-----ADQGEALAKEL-G 155 (213)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS-CCSC-----HHHHHHHHHHH-T
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-cccC-----HHHHHHHHHHc-C
Confidence 2336789999999999987544333 2455555553 689999999999943 2221 11122222222 3
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|.+.+
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999997653
No 102
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.78 E-value=6.4e-19 Score=163.61 Aligned_cols=157 Identities=17% Similarity=0.073 Sum_probs=106.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.... ....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 86 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI------------ 86 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh------------
Confidence 4568999999999999999999987533 22333334343333333322 247899999999765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+.. .++..+... +.|+++|+||+|+...+... .+...+..... +.
T Consensus 87 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~-----~~~~~~~~~~~-~~ 158 (191)
T 2a5j_A 87 --TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK-----REEGEAFAREH-GL 158 (191)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-----HHHHHHHHHHH-TC
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccC-----HHHHHHHHHHc-CC
Confidence 22367899999999999875443333 355666553 78999999999996543322 11222222222 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++++||++|.||+++|++|.+.
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 159 IFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998764
No 103
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=167.81 Aligned_cols=158 Identities=22% Similarity=0.144 Sum_probs=101.5
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.... ....+..+.+.....+... ....+.+|||||+.++..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------- 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS------------- 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCHH-------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh-------------
Confidence 4579999999999999999999986532 2222222222222223221 234689999999865421
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCC------CCchhhhHHHHHHHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIP------NKNQQTATYYEQDVREKL 518 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~------~~~~~~~~~~~~~~~~~l 518 (549)
....+++.+|++|+|+|++++.+.+.. .|+..+... ++|++||+||+|+.. ..... .+...+..
T Consensus 93 -~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~-----~~~~~~~~ 166 (199)
T 2p5s_A 93 -IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVP-----GHFGEKLA 166 (199)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCC-----HHHHHHHH
T ss_pred -hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccC-----HHHHHHHH
Confidence 234467899999999999876544433 355555543 789999999999862 11111 11122222
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
... +.+++++||++|.||+++|.+|.+.+
T Consensus 167 ~~~-~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 167 MTY-GALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HHH-TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHc-CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 222 45899999999999999999998754
No 104
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=161.57 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=108.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++... .....+++.+.....+...+ ...+.+|||||+.++..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 77 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA------------- 77 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHH-------------
Confidence 356899999999999999999998752 23344455444444444322 23789999999866432
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
....+++.+|++++|+|++++.+.... .|+..+... ++|+++|+||+|+....... .+.+.+.+...+
T Consensus 78 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~- 150 (206)
T 2bov_A 78 -IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-----VEEAKNRAEQWN- 150 (206)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC-----HHHHHHHHHHHT-
T ss_pred -HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc-----HHHHHHHHHHhC-
Confidence 123467899999999999875443333 344555543 78999999999997643322 122233333333
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||++||++|.+.+
T Consensus 151 ~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 151 VNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999997653
No 105
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.78 E-value=8.5e-19 Score=161.03 Aligned_cols=155 Identities=19% Similarity=0.134 Sum_probs=106.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+|+++|.+|+|||||+|++++... .....+++.+........ ++ ..+.+|||||+.++....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~----------- 71 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFP----------- 71 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCC-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHH-----------
Confidence 46899999999999999999997642 233334444433333332 43 467899999997754221
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
..+++.+|++++|+|++++.+.+... ++..+.. .++|+++|+||+|+...+... .+...+..... +
T Consensus 72 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~-~ 142 (181)
T 3t5g_A 72 ---QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS-----YEEGKALAESW-N 142 (181)
T ss_dssp ---GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC-----HHHHHHHHHHT-T
T ss_pred ---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec-----HHHHHHHHHHh-C
Confidence 12468999999999998754444433 4444433 378999999999997654432 12233333433 4
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.|++++|+.|.+.+
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 143 AAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp CEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998753
No 106
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=158.20 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=113.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||...+.....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 76 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS---------- 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH----------
Confidence 3578999999999999999999987633 44556666666667777777 5689999999876544322
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
.++..+|++++|+|++.+.+.... .++..+.....+.|+++|+||+|+...
T Consensus 77 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 77 ----------------------------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred ----------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 446789999999998874333221 133334444457899999999998754
Q ss_pred hHHh---H-HHHHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 GIMQ---V-SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~~~~---~-~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.... . ......+++++++||++|.|+.++++.+.+.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3211 1 11233577899999999999999999998877543
No 107
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=159.71 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=107.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++...+.....+ |.......+.. ++..+.+|||||+.++...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~------------- 83 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP--TIGFSIEKFKS-SSLSFTVFDMSGQGRYRNL------------- 83 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC--CSSEEEEEEEC-SSCEEEEEEECCSTTTGGG-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC--ccceeEEEEEE-CCEEEEEEECCCCHHHHHH-------------
Confidence 3568999999999999999999986533322222 33333334443 5789999999999765431
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh--c
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR--A 520 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~--~ 520 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+...... +++.+.+. .
T Consensus 84 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~ 155 (190)
T 2h57_A 84 -WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS-------VKVSQLLCLEN 155 (190)
T ss_dssp -GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH-------HHHHHHHTGGG
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH-------HHHHHHhChhh
Confidence 11257899999999999875433332 34444443 47899999999999754321 22223332 2
Q ss_pred C--CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 L--DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~--~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
. .+.+++++||++|.||++||++|.+.+
T Consensus 156 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 156 IKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1 245899999999999999999998765
No 108
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.78 E-value=9.5e-19 Score=178.41 Aligned_cols=169 Identities=24% Similarity=0.258 Sum_probs=109.1
Q ss_pred CCCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhh
Q 008909 158 VPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 158 ~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
+.....++|+|+|++|||||||+|+|++.. ..+.+.+++|.+...+.+.++|..+.++||||+.. ..+..+.+.+
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~--~lp~~lve~f-- 248 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR--GIPPQIVDAF-- 248 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCS--SCCGGGHHHH--
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchh--cCCHHHHHHH--
Confidence 334456779999999999999999999886 46778889999999999999999999999999854 2222222211
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC--CcchH-HHHHHHHHc-cCCCeEEEEeccC
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADE-EIADWLRKN-YMDKFIILAVNKC 313 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~--~~~~~-~~~~~l~~~-~~~~p~ivv~NK~ 313 (549)
+.+...+..+|++++|+|++.+. ..... .+...+... ..+.|+++|+||+
T Consensus 249 --------------------------~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~ 302 (364)
T 2qtf_A 249 --------------------------FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKI 302 (364)
T ss_dssp --------------------------HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECG
T ss_pred --------------------------HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECC
Confidence 23445678899999999987653 11111 123334332 2478999999999
Q ss_pred CCChhhHHhHHH----H-HHc---CCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 314 ESPRKGIMQVSE----F-WSL---GFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 314 D~~~~~~~~~~~----~-~~~---~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
|+.......... + ... +.+++++||++|.|++++++.+.+.+..
T Consensus 303 Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 303 DKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 987543211111 1 112 2357999999999999999999887654
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.78 E-value=3.3e-18 Score=161.72 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=103.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC--CCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||++++++... ....++++.+... +...+ +..+.+|||||+.++..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~------------ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRF------------ 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHH------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHH------------
Confidence 356899999999999999999998753 2333444544433 33322 56899999999965421
Q ss_pred HHHHHHHHhcCCcEEEEEEccccC--CHhHHHHHH-HHHH-----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACI--TEQDCRIAE-RIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~--~~~~~~~l~-~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~ 519 (549)
.....+++.+|++|+|+|+++.. ......++. .+.. .++|+++|+||+|+....... ...+.+.+.+.
T Consensus 70 -~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~l~~~l~ 145 (214)
T 2fh5_B 70 -QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAK---LIQQQLEKELN 145 (214)
T ss_dssp -HHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHH---HHHHHHHHHHH
T ss_pred -HHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHH---HHHHHHHHHHH
Confidence 01223579999999999998621 111222232 2222 368999999999998654432 22333333333
Q ss_pred ---------------------cCC-------------CCCEEEEccccC------CCHHHHHHHHHhhh
Q 008909 520 ---------------------ALD-------------WAPIVYSTAIAG------QSVDKYVLYLATSF 548 (549)
Q Consensus 520 ---------------------~~~-------------~~~~i~iSA~~g------~~v~~L~~~l~~~~ 548 (549)
... ..+|++|||++| .||+++|++|.+.+
T Consensus 146 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 146 TLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred HHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 111 457999999999 99999999998753
No 110
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.78 E-value=2.2e-18 Score=160.28 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=103.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||++++++...... .| |+......+. .++..+.+|||||+.++...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~------------- 89 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVE-YKNICFTVWDVGGQDKIRPL------------- 89 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEE-ETTEEEEEEECC-----CTT-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEE-ECCEEEEEEECCCCHhHHHH-------------
Confidence 356899999999999999999987764432 22 2222223333 25678999999999664321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+...... .++.+.+..........
T Consensus 90 -~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~ 165 (192)
T 2b6h_A 90 -WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTW 165 (192)
T ss_dssp -HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCE
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCce
Confidence 22367899999999999886544433 34444443 37999999999999764321 11222221111112334
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|++++|++|.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHH
Confidence 799999999999999999998764
No 111
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.78 E-value=5.4e-18 Score=157.34 Aligned_cols=168 Identities=27% Similarity=0.383 Sum_probs=118.2
Q ss_pred CCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 159 ~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
.....++|+++|.+|+|||||+|+|++.......+.+++|....... .+.++.+|||||+........
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~--------- 86 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKK--------- 86 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHH---------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChh---------
Confidence 34567899999999999999999999887666677777777665432 245789999999754211100
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
.. ..+ ..+.....+....+|++++|+|++.+.......+..++... +.|+++|+||+|+...
T Consensus 87 -----------~~----~~~-~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 87 -----------ER----MLW-KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKVKM 148 (195)
T ss_dssp -----------HH----HHH-HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCG
T ss_pred -----------hH----HHH-HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChhcCCh
Confidence 00 000 11122333444567999999999887777777777777765 8999999999998754
Q ss_pred hHHh-----HHHHHHc--CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIMQ-----VSEFWSL--GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~~-----~~~~~~~--~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... ...+... .++++++||++|.|+.++++.+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 149 SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 3211 1222222 358999999999999999999987765
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=3.4e-18 Score=159.00 Aligned_cols=167 Identities=22% Similarity=0.238 Sum_probs=108.2
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCC-ceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
....++|+++|.+|+|||||+|+|++.. .......+++|........ +..+.+|||||+........ ..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~-~~------ 89 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKS-ER------ 89 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHH-HH------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHH-HH------
Confidence 3457899999999999999999999875 3456677777777655432 44799999999765322110 00
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
..+. .+..........+|++++|+|++.+.+..+..+..++... +.|+++|+||+|+...
T Consensus 90 -----------------~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 90 -----------------EAWG-RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY--GIPVIVIATKADKIPK 149 (195)
T ss_dssp -----------------HHHH-HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCG
T ss_pred -----------------HHHH-HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCCh
Confidence 0000 1112222333445999999999988887777777777664 7899999999999764
Q ss_pred hHHh-----HHHHHH--cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIMQ-----VSEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~~-----~~~~~~--~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... ....+. .+.+++++||++|.|+.++++.+.+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 150 GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3221 111122 2457899999999999999999987654
No 113
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=164.40 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=103.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------------ 90 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV------------ 90 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH------------
Confidence 35689999999999999999999765 3334445555454444443322 257999999998654321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++|+|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+........ .+..+..... +.
T Consensus 91 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----~~~~~~~~~~-~~ 162 (200)
T 2o52_A 91 --TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF-----LEASRFAQEN-EL 162 (200)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH-----HHHHHHHHHT-TC
T ss_pred --HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH-----HHHHHHHHHc-CC
Confidence 22367899999999999885443333 35555554 3789999999999965433221 2222333333 46
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 163 ~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 163 MFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 114
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=5.5e-19 Score=165.53 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=105.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.... .... .++.+........ ..+..+.+|||||+.++....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 89 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYD-PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP----------- 89 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCC-CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC-----------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCC-CccceEEEEEEEECCEEEEEEEEECCCccchHHHH-----------
Confidence 3568999999999999999999987533 2222 3333333333322 134578999999997754321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
..+++.+|++++|+|++++.+.+... ++..+... ++|+++|+||+|+........ ....+.... .+
T Consensus 90 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-----~~~~~~~~~-~~ 160 (201)
T 3oes_A 90 ---YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQA-----VEGKKLAES-WG 160 (201)
T ss_dssp ---GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCH-----HHHHHHHHH-HT
T ss_pred ---HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCH-----HHHHHHHHH-hC
Confidence 12578999999999999754433333 44555443 789999999999975443321 112222222 23
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|.+.+
T Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 161 ATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 115
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=3.7e-19 Score=163.39 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=101.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||++++++.. +. ....+|+.+.....+... ....+.+|||||+.++....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT-FP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR----------- 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC-CC-----------CBCCCC-------CEEECCCC-CTTTTTG-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhH-----------
Confidence 34689999999999999999999765 22 222333333322222211 13456799999997754211
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhh-----hHHHHHHHHHHHh
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQT-----ATYYEQDVREKLR 519 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~-----~~~~~~~~~~~l~ 519 (549)
..+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+........ ......+..+...
T Consensus 74 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 74 ---PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp ---GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred ---HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 1257899999999999886554444 366666664 799999999999875432100 0000122223333
Q ss_pred cCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 520 ALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 520 ~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+..+++++||++|.|++++|++|.+.+
T Consensus 151 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 151 LIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33335899999999999999999998753
No 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=161.48 Aligned_cols=157 Identities=16% Similarity=0.114 Sum_probs=104.9
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
....+|+++|.+|+|||||++++++.. +. .....|+.+......... ....+.+|||||+.++..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------ 84 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR-FI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN------------ 84 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS-CC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC-CC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh------------
Confidence 345689999999999999999999875 22 333344444333333321 234788999999976421
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH------hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~ 520 (549)
+ ..+++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+...+.... ++..+....
T Consensus 85 ~---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----~~~~~~~~~ 156 (187)
T 3c5c_A 85 C---ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK-----AEGVALAGR 156 (187)
T ss_dssp T---HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCH-----HHHHHHHHH
T ss_pred H---HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCH-----HHHHHHHHH
Confidence 1 13678999999999999755444433 5555554 3799999999999965433321 222223332
Q ss_pred CCCCCEEEEcc-ccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTA-IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA-~~g~~v~~L~~~l~~~~ 548 (549)
. +.+++++|| ++|.||+++|+.|.+.+
T Consensus 157 ~-~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 157 F-GCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp H-TCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred c-CCcEEEEeecCccccHHHHHHHHHHHH
Confidence 2 358999999 89999999999998753
No 117
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=5.2e-19 Score=186.78 Aligned_cols=161 Identities=29% Similarity=0.390 Sum_probs=111.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.++|+++|.+|+|||||+|++++.....+...+|+|++....... +.+..+.+|||||+... ...........
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~-~~~~~~~liDT~G~~~~------~~~~~~~~~~~ 95 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIG------DEPFLAQIRQQ 95 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECT-TCSSCCEEECCCC------------CCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEE-ECCceEEEEECCCCCCc------chHHHHHHHHH
Confidence 468999999999999999999998766688899999998877665 46789999999998531 11223334556
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEc
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iS 530 (549)
+..+++.+|++|+|+|+.++++..+..++..+.+.++|+++|+||+|+..... ...+.. ..+...++++|
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~---------~~~e~~-~lg~~~~~~iS 165 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA---------NIYDFY-SLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------------------CCSG-GGSSSSEEECC
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh---------hHHHHH-HcCCCceEEee
Confidence 66788999999999999999999999999999989999999999999864321 111111 23344678999
Q ss_pred cccCCCHHHHHHHHHhhh
Q 008909 531 AIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 531 A~~g~~v~~L~~~l~~~~ 548 (549)
|++|.|+.+|++.+.+.+
T Consensus 166 A~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp TTTCTTHHHHHHHHHTTG
T ss_pred cccccchHHHHHHHHhhc
Confidence 999999999999987653
No 118
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=1.4e-18 Score=157.45 Aligned_cols=155 Identities=28% Similarity=0.389 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
.+|+++|++|||||||+|+|++.. ..++..+++|.+...+.+.+++..+.+|||||+..+..... .+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--~~---------- 70 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DE---------- 70 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH--HH----------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch--hH----------
Confidence 579999999999999999999865 34566778888887888888888999999999876532210 00
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
.....++ ..+|++++|+|++.. .....+...+.+. +.|+++|+||+|+......
T Consensus 71 --------------------~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~ 126 (165)
T 2wji_A 71 --------------------IIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEM--GANLLLALNKMDLAKSLGI 126 (165)
T ss_dssp --------------------HHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHT--TCCEEEEEECHHHHHHTTC
T ss_pred --------------------HHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhc--CCCEEEEEEchHhccccCh
Confidence 0111222 378999999998752 1122233344443 7899999999998643211
Q ss_pred --hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 322 --QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 322 --~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
....+ ...+.+++++||++|.|++++++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 127 EIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 11112 23467899999999999999999987655
No 119
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.3e-18 Score=163.81 Aligned_cols=161 Identities=13% Similarity=0.119 Sum_probs=104.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.... ....+.++.+ ....+...+ ...+.+|||||+.++....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------ 90 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFEN-YVADIEVDGKQVELALWDTAGQEDYDRLR------------ 90 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCE-EEEEEEETTEEEEEEEEECTTCTTCTTTG------------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccce-EEEEEEECCEEEEEEEEECCCcHHHHHHH------------
Confidence 458999999999999999999987532 2222333332 222333222 2478999999997653211
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh-H------HHHHHHHHHH
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-T------YYEQDVREKL 518 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-~------~~~~~~~~~l 518 (549)
..+++.+|++++|+|++++.+.+.. .|+..+... ++|+++|+||+|+......... . ...+...+..
T Consensus 91 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (207)
T 2fv8_A 91 --PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMA 168 (207)
T ss_dssp --GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred --HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHH
Confidence 1256899999999999875443333 466666665 8999999999999754211000 0 0011222333
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
...+..+++++||++|.||++||++|.+.
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 169 VRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 33443489999999999999999999765
No 120
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=164.61 Aligned_cols=163 Identities=15% Similarity=0.073 Sum_probs=98.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
+..+|+++|.+|+|||||++++++... ... ..+++.+.....+...+ ...+.+|||||+.++...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~-~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------------ 98 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF-PES-YTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRL------------ 98 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCC-CCCccceeEEEEEEECCEEEEEEEEECCCchhhhHH------------
Confidence 356899999999999999999998653 222 22333333333333222 237899999999764321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh-------HHHHHHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-------TYYEQDVREK 517 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-------~~~~~~~~~~ 517 (549)
...+++.+|++++|+|++++.+.+.. .|+..+... ++|+++|+||+|+......... ....++..+.
T Consensus 99 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 99 --RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred --HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 12357899999999999886554444 355666554 7899999999999764321000 0001223344
Q ss_pred HhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 518 LRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....+..+++++||++|.||+++|++|.+.+
T Consensus 177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 4444445899999999999999999997753
No 121
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.78 E-value=1.9e-18 Score=160.05 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=106.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.......+..+.+ ...+.. ++..+.+|||||+.++....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~-~~~~~~~~Dt~G~~~~~~~~------------ 83 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQY-KNISFEVWDLGGQTGVRPYW------------ 83 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEE-TTEEEEEEEECCSSSSCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEE-CCEEEEEEECCCCHhHHHHH------------
Confidence 3568999999999999999999877654433322322 222332 56789999999997654321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+....... ++...+........+.
T Consensus 84 --~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~ 158 (189)
T 2x77_A 84 --RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA---EIAEQLGVSSIMNRTW 158 (189)
T ss_dssp --SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH---HHHHHTTGGGCCSSCE
T ss_pred --HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHH---HHHHHhChhhccCCce
Confidence 1146899999999999987554433 34444443 378999999999997653321 1122211111112234
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|+++++++|.+.+
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 159 TIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCccCHHHHHHHHHHHH
Confidence 799999999999999999998754
No 122
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=7.8e-19 Score=166.57 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=106.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-ecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhh
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
...+|+++|.+|+|||||+|++++..... .....+++... ..+...++ ..+.+|||||+.++...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 77 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQGNVIKFNVWDTAGQEKKAVL---------- 77 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTTSCEEEEEEEEECSGGGTSCC----------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCCCcEEEEEEEecCCchhhchH----------
Confidence 35689999999999999999999764321 22333333322 22222223 46899999999765321
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
...+++.+|++|+|+|++++.+.++. .|+..+... +.|+++|+||+|+....... ..... .+....
T Consensus 78 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~~-~~~~~~ 147 (218)
T 4djt_A 78 ----KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS-----KKLVM-EVLKGK 147 (218)
T ss_dssp ----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC-----HHHHH-HHTTTC
T ss_pred ----HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC-----HHHHH-HHHHHc
Confidence 11257899999999999986554444 344555443 68999999999997643322 12222 333345
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.+++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998754
No 123
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.78 E-value=2.4e-18 Score=157.64 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=107.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++... .....+++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----------- 73 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAM----------- 73 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHH-----------
Confidence 346899999999999999999998742 233445555544444433 33 47889999999765321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHH----HhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIE----QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
...+++.+|++++|+|++++.+.... .++..+. ..++|+++|+||+|+...+.... ......... .
T Consensus 74 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----~~~~~~~~~-~ 144 (181)
T 2fn4_A 74 ---REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR-----SEASAFGAS-H 144 (181)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH-----HHHHHHHHH-T
T ss_pred ---HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH-----HHHHHHHHH-c
Confidence 12357889999999999885433333 3444442 23789999999999976433321 112222222 3
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.+++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 145 HVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 124
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.3e-18 Score=165.96 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=105.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||++++++.... ....++++.+.....+.. ++ ..+.+|||||+.++..+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------- 79 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAIT---------- 79 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhH----------
Confidence 3468999999999999999999987532 333344444444444433 33 478999999997754321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
..+++.+|++|+|+|++++.+.+.. .|+..+... ++|++||+||+|+....... .....+..... +
T Consensus 80 ----~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~-----~~~~~~~~~~~-~ 149 (223)
T 3cpj_B 80 ----SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP-----TEESKTFAQEN-Q 149 (223)
T ss_dssp ----GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC-----HHHHHHHHHHT-T
T ss_pred ----HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC-----HHHHHHHHHHc-C
Confidence 1257899999999999986554443 355666654 78999999999997543322 12222333333 4
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|.+.+
T Consensus 150 ~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 150 LLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp CEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997654
No 125
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.78 E-value=4.3e-18 Score=157.12 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=104.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+|+++|.+|+|||||+|++++... ....++++.+.....+.. ++. .+.+|||||+.++..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~------------ 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM------------ 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH------------
Confidence 45899999999999999999998653 334445555554444443 333 4778999998765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...... .+.+.+..... +
T Consensus 69 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~------~~~~~~~~~~~-~ 139 (189)
T 4dsu_A 69 --RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVD------TKQAQDLARSY-G 139 (189)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSC------HHHHHHHHHHH-T
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccC------HHHHHHHHHHc-C
Confidence 12357889999999999975443333 34455544 37899999999999743221 11222222222 3
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.|++++|++|.+.+
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 126
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=1.5e-18 Score=169.53 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=118.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCC-ceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhh---
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA--- 445 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~g-tt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~--- 445 (549)
...+|+++|.+|+|||||+|++++...+.....++ +|++.....+. +++.++.||||||+.++.. ..+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~iiDTpG~~~~~~------~~~~~~~ 93 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS-WGNREIVIIDTPDMFSWKD------HCEALYK 93 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE-ETTEEEEEEECCGGGGSSC------CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE-eCCCEEEEEECcCCCCCCC------CHHHHHH
Confidence 35689999999999999999999987666666665 77776665554 4778999999999976532 1111
Q ss_pred hHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh-----CCcEEEEEe-cccCCCCCchhhhHHHH----HHHH
Q 008909 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-----GKGCLIVVN-KWDTIPNKNQQTATYYE----QDVR 515 (549)
Q Consensus 446 ~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~-----~~p~ivv~N-K~Dl~~~~~~~~~~~~~----~~~~ 515 (549)
.....+..+++.+|++|+|+|+++ ++..+..++.++.+. ..|.++|+| |+|+.... .. ..+. ..+.
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~--~~i~~~~~~~~~ 169 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LM--DYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HH--HHHHHCCCHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HH--HHHHhcchHHHH
Confidence 113344456799999999999986 777887777777775 678888887 99997432 11 1010 1122
Q ss_pred HHHhcCC-----CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 516 EKLRALD-----WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 516 ~~l~~~~-----~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.+..+. +.+ +++||++|.|+++||+.|.+++
T Consensus 170 ~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 170 KLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHH
Confidence 2333332 222 8899999999999999998754
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.77 E-value=8.3e-19 Score=165.63 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=110.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||++++++... . ....+|+.+.....+...+ ...+.+|||||+.++..+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-P-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR----------- 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHH-----------
Confidence 346899999999999999999997653 2 3333444444444444322 2478999999997754321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCch------hhhHHHHHHHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQ------QTATYYEQDVREKL 518 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~------~~~~~~~~~~~~~l 518 (549)
..+++.+|++++|+|++++.+.+.. .|+..+... +.|++||+||+|+...... .+. ..+..+..
T Consensus 75 ---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~---~~~~~~~~ 148 (212)
T 2j0v_A 75 ---PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT---STQGEELR 148 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCC---HHHHHHHH
T ss_pred ---HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCC---HHHHHHHH
Confidence 1257899999999999886554443 466677665 7999999999998654321 000 12223333
Q ss_pred hcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 519 RALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 519 ~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
...+..+++++||++|.||+++|++|.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 149 KQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 333445899999999999999999997653
No 128
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=3.1e-18 Score=163.87 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=113.1
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
...++|+++|.+|||||||+|+|++... .+...+++|.........+.+..+.+|||||+.+.........
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~-------- 97 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTI-------- 97 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHH--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhH--------
Confidence 3468999999999999999999998864 3677888888888887788888999999999965321110000
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH---HHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE---EIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~---~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
...........+|++|+|+|++.+.+.... .++..+.....+.|+++|+||+|+..
T Consensus 98 ---------------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 98 ---------------------EMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp ---------------------HHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred ---------------------HHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 001122335678999999999876554322 33444444334789999999999865
Q ss_pred hhHH------hHHHHHH-cC--CCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 318 KGIM------QVSEFWS-LG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 318 ~~~~------~~~~~~~-~~--~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.... ....+.. .+ .+++++||++|.|+.++++.+.+.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 157 MDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp --CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 3211 1122222 33 6789999999999999999998877543
No 129
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.77 E-value=2.6e-18 Score=159.20 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=106.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++... .....++++.+.....+...+ ...+.+|||||+.++..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------------- 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh-------------
Confidence 346899999999999999999997653 233344444444444443322 35799999999865420
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
.....+++.+|++|+|+|++++.+.+. ..|+..+.. .++|+++|+||+|+....... .+...+..... +
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-----~~~~~~~~~~~-~ 158 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP-----TDLAQKFADTH-S 158 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC-----HHHHHHHHHHT-T
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC-----HHHHHHHHHHc-C
Confidence 112346789999999999987544333 235555554 368999999999996543322 12222333333 4
Q ss_pred CCEEEEccccC---CCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAG---QSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g---~~v~~L~~~l~~~~ 548 (549)
.+++++||++| .||+++|++|.+.+
T Consensus 159 ~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 MPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 58999999999 99999999997654
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.77 E-value=2.2e-18 Score=166.88 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=115.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-CceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~-gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++...+.....+ ++|+......+. +++..+.||||||+.+... .......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~liDTPG~~~~~~------~~~~~~~ 92 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR-WDKCHVEVVDTPDIFSSQV------SKTDPGC 92 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE-ETTEEEEEEECCSCSSTTH------HHHSTTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE-ECCcEEEEEECCCCCCCCC------CcHHHHH
Confidence 4568999999999999999999998766555443 577777666555 4688999999999965322 1101112
Q ss_pred HHH----HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh------CCcEEEEEecccCCCCCchhhhHHH-HHHHHHH
Q 008909 449 NRA----FRAIRRSDVVALVIEAMACITEQDCRIAERIEQE------GKGCLIVVNKWDTIPNKNQQTATYY-EQDVREK 517 (549)
Q Consensus 449 ~~~----~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~ 517 (549)
... ..+++++|++|+|+|+++ ++..+..+++.+.+. +.|+|||.||+|+............ ...+...
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l 171 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL 171 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH
Confidence 223 234499999999999985 888888888888774 7899999999999653211111000 0235566
Q ss_pred HhcCCCCCEEEEcccc-----CCCHHHHHHHHHhhh
Q 008909 518 LRALDWAPIVYSTAIA-----GQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~~~~~~~i~iSA~~-----g~~v~~L~~~l~~~~ 548 (549)
+..+++ .++++++.. +.|+++|++.|.+++
T Consensus 172 ~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 172 VAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp HHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 666654 677776554 689999999998765
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.77 E-value=1.2e-18 Score=160.88 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=106.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||++++++... .....+.+... ....+... ....+.+|||||+.++..+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 72 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDNVR----------- 72 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEE-EEEEEECSSCEEEEEEEEECCSGGGTTTG-----------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccee-EEEEEEECCEEEEEEEEECCCChhhhhhH-----------
Confidence 346899999999999999999998653 22233333322 23333322 23478999999997654321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCc----------hhhhHHHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKN----------QQTATYYEQDV 514 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~ 514 (549)
..+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+..... ..+. .++.
T Consensus 73 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~~ 146 (184)
T 1m7b_A 73 ---PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS---YDQG 146 (184)
T ss_dssp ---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCC---HHHH
T ss_pred ---HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCC---HHHH
Confidence 1146899999999999986555543 355666653 789999999999974210 0010 1223
Q ss_pred HHHHhcCCCCCEEEEccc-cCCCHHHHHHHHHhh
Q 008909 515 REKLRALDWAPIVYSTAI-AGQSVDKYVLYLATS 547 (549)
Q Consensus 515 ~~~l~~~~~~~~i~iSA~-~g~~v~~L~~~l~~~ 547 (549)
.+.....+..+++++||+ +|.||+++|+.|.+.
T Consensus 147 ~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 147 ANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp HHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 333333444689999999 689999999999775
No 132
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.77 E-value=1.1e-18 Score=165.42 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=107.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-----------CCeEEEEeCCCccchhhhcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-----------GQKFRLIDTAGIRKRAAIAS 438 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-----------~~~i~l~DTpG~~~~~~~~~ 438 (549)
...+|+++|.+|+|||||+|++++... .....++++.+.....+.+.+ ...+.||||||+.++.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR---- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH----
Confidence 356899999999999999999998643 222333333443333333222 3579999999985532
Q ss_pred CCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHH
Q 008909 439 SGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQD 513 (549)
Q Consensus 439 ~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 513 (549)
.....+++.+|++|+|+|++++.+.+... |+..+.. .++|++||+||+|+....... ...
T Consensus 99 ----------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~-----~~~ 163 (217)
T 2f7s_A 99 ----------SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN-----ERQ 163 (217)
T ss_dssp ----------HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC-----HHH
T ss_pred ----------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC-----HHH
Confidence 12345689999999999998754433332 3443433 468999999999996543322 122
Q ss_pred HHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 514 VREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 514 ~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.+..... +.+++++||++|.||++||++|.+.+
T Consensus 164 ~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 164 ARELADKY-GIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHT-TCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 23333333 46899999999999999999998753
No 133
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=3.6e-18 Score=158.63 Aligned_cols=156 Identities=19% Similarity=0.100 Sum_probs=106.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++... .....+..+.+.....+... .+..+.+|||||+.++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 80 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL------------- 80 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-------------
Confidence 46899999999999999999998653 23333333333333333322 2457999999999764321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++|+|+|++++.+.... .|+..+.. .++|+++|+||+|+... ... .+...+.+... +.
T Consensus 81 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~-----~~~~~~~~~~~-~~ 152 (195)
T 1x3s_A 81 -TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR-EVD-----RNEGLKFARKH-SM 152 (195)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC-CSC-----HHHHHHHHHHT-TC
T ss_pred -hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccc-ccC-----HHHHHHHHHHc-CC
Confidence 23467899999999999876443333 35555554 36899999999999542 221 12223333333 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 153 LFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997753
No 134
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-18 Score=164.70 Aligned_cols=158 Identities=13% Similarity=0.157 Sum_probs=104.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+|+++|.+|+|||||+|++++.........++++.+.....+.. ++. ++.+|||+|+... ...+
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~-----------~~~l 104 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGE-----------NEWL 104 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHH-----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcch-----------hhhH
Confidence 4689999999999999999999754322333444555554444443 443 5688999998431 0011
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++++|||++++.+.+... |+..+.. .++|+|+|+||+|+...+..... .. +.+....+
T Consensus 105 --~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~-----e~-~~~a~~~~ 176 (211)
T 2g3y_A 105 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS-----EG-RACAVVFD 176 (211)
T ss_dssp --HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHH-----HH-HHHHHHHT
T ss_pred --HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHH-----HH-HHHHHHcC
Confidence 122468899999999998754444433 4455553 26899999999999754333211 11 11121223
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|.+.+
T Consensus 177 ~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 CKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999997643
No 135
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=5.9e-19 Score=163.89 Aligned_cols=159 Identities=18% Similarity=0.117 Sum_probs=107.4
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCee-ecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
....+|+++|.+|+|||||+|++++..... ..+..|++......... ..+..+.+|||||+.++.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~------------- 86 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQERYR------------- 86 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHHHCH-------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChHHHH-------------
Confidence 446799999999999999999999754221 11222333333222222 245679999999985532
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
.....+++.+|++++|+|++++.+.+. ..|+..+.. .+.|+++|+||+|+...+.... ....+..... +
T Consensus 87 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~-~ 159 (191)
T 3dz8_A 87 -TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT-----EKGQLLAEQL-G 159 (191)
T ss_dssp -HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-----HHHHHHHHHH-T
T ss_pred -HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH-----HHHHHHHHHc-C
Confidence 123446899999999999987544333 335566665 4789999999999865433221 1222222222 3
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|++|.+.+
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 136
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.77 E-value=2.3e-18 Score=182.32 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=118.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCC------eeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhh
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDR------TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~------~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e 444 (549)
..+|+++|+.++|||||+++|++... ......+|+|++.....+.+ ++..+.+|||||+.++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~~----------- 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADL----------- 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHH-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHHH-----------
Confidence 46899999999999999999998651 23445668888776555554 6678999999999654
Q ss_pred hhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC---
Q 008909 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--- 521 (549)
Q Consensus 445 ~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~--- 521 (549)
...+...++.+|++|+|+|++++...+..+.+..+...++|.|+|+||+|+.... ..+...+++.+.+...
T Consensus 87 ---~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~---~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 87 ---IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE---EIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp ---HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH---HHHHHHHHHHHHHHHSSSG
T ss_pred ---HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccch---hHHHHHHHHHHHHhhhccc
Confidence 3445667899999999999999989999999988888999999999999997522 2233445566666544
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
...+++++||++|.|+++|+++|.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHh
Confidence 24689999999999999999999874
No 137
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=6.9e-19 Score=173.11 Aligned_cols=163 Identities=22% Similarity=0.270 Sum_probs=117.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|.+|||||||+|+|+|.. ..+++.+|+|.+...+.+.+.+..+.+|||||+.++.......
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~----------- 70 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT----------- 70 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----C-----------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccC-----------
Confidence 4689999999999999999999987 6789999999999999998889999999999998754311000
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM- 321 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~- 321 (549)
.+...+.+ .......+|++++|+|++. ......+..++... +.|+++|+||+|+......
T Consensus 71 --------------~~~e~i~~-~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~ 131 (274)
T 3i8s_A 71 --------------SLDEQIAC-HYILSGDADLLINVVDASN--LERNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIR 131 (274)
T ss_dssp --------------CHHHHHHH-HHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHH--TCCEEEEEECHHHHHHTTEE
T ss_pred --------------CHHHHHHH-HHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhc--CCCEEEEEECccchhhhhHH
Confidence 00000111 1112368999999999876 22333444555555 8999999999998653211
Q ss_pred -hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 322 -QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 322 -~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... ....+++++++||++|.|++++++.+.+.+.
T Consensus 132 ~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 132 IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 1111 2235789999999999999999999876654
No 138
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.77 E-value=6.3e-19 Score=165.54 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=78.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCce-eeeeEEEEeccC---CCeEEEEeCCCccchhhhccCCChhhh
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT-RDAIDTEFTGPE---GQKFRLIDTAGIRKRAAIASSGSTTEA 445 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt-~~~~~~~~~~~~---~~~i~l~DTpG~~~~~~~~~~~~~~e~ 445 (549)
...+|+++|.+|+|||||+|++++..........+|+ .+.....+...+ ...+.+|||||+.++..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 88 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKE---------- 88 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHH----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHH----------
Confidence 3468999999999999999999986222222333333 355444555433 34799999999965432
Q ss_pred hHHHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH------hCCcEEEEEecccCCC-CCchhhhHHHHHHHHHH
Q 008909 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIP-NKNQQTATYYEQDVREK 517 (549)
Q Consensus 446 ~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~------~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~ 517 (549)
....+++.+|++++|+|++++.+.+.. .|+..+.. .++|+++|+||+|+.. ..... .+.+.+.
T Consensus 89 ----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~-----~~~~~~~ 159 (208)
T 2yc2_C 89 ----QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR-----LDMAQDW 159 (208)
T ss_dssp ----HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC-----HHHHHHH
T ss_pred ----HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC-----HHHHHHH
Confidence 122357899999999999886543333 46666665 4789999999999976 33322 1233344
Q ss_pred HhcCCCCCEEEEcccc-CCCHHHHHHHHHhhh
Q 008909 518 LRALDWAPIVYSTAIA-GQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~~~~~~~i~iSA~~-g~~v~~L~~~l~~~~ 548 (549)
+...+ .+++++||++ |.|++++|++|.+.+
T Consensus 160 ~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 160 ATTNT-LDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHHTT-CEEEECCC-------CHHHHHHHHHH
T ss_pred HHHcC-CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 44443 6899999999 999999999997743
No 139
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.77 E-value=9.3e-19 Score=186.67 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=93.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee---------------------ecCCCCceeeeeEEEEeccCCCeEEEEeCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI---------------------VSPISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~---------------------~~~~~gtt~~~~~~~~~~~~~~~i~l~DTp 428 (549)
+.++|+++|++|+|||||+|+|++..... .....|+|.......+.+ ++..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 35689999999999999999997321111 011246666665555553 67899999999
Q ss_pred CccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCC
Q 008909 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNK 502 (549)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~ 502 (549)
|+.+|.. .+.++++.+|++|+|+|++++...++..++..+...++|+++|+||+|+....
T Consensus 91 G~~df~~--------------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFTE--------------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCCH--------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred CchhHHH--------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 9987632 35567899999999999999999999999999999999999999999997543
No 140
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=4.5e-18 Score=156.34 Aligned_cols=153 Identities=19% Similarity=0.173 Sum_probs=103.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.......+..|... ..+.+ ++..+.+|||||+.++...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~-~~~~~~i~Dt~G~~~~~~~------------- 78 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSY-KNLKLNVWDLGGQTSIRPY------------- 78 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEE-TTEEEEEEEEC----CCTT-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEE-CCEEEEEEECCCCHhHHHH-------------
Confidence 35689999999999999999999765433444444322 22332 5678999999999764321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc----
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA---- 520 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~---- 520 (549)
...+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...... ..+.+.+..
T Consensus 79 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~i~~~~~~~~~~ 150 (183)
T 1moz_A 79 -WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA-------SEVSKELNLVELK 150 (183)
T ss_dssp -GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH-------HHHHHHTTTTTCC
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCH-------HHHHHHhCccccc
Confidence 11256899999999999887554443 34555443 47899999999999764321 222233321
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....+++++||++|.|+++++++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1234799999999999999999998754
No 141
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=5.4e-18 Score=165.12 Aligned_cols=157 Identities=25% Similarity=0.348 Sum_probs=116.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|.+|||||||+|+|+|.. ..++..+|+|.+...+.+.+.+..+.+|||||+.++......
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------ 71 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID------------ 71 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH------------
Confidence 4689999999999999999999976 457889999999988888888899999999999875432210
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
. .....++ ..+|++++|+|++.. .....+...+... +.|+++|+||+|+.....
T Consensus 72 -----------------e---~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~--~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 72 -----------------E---KIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEM--EKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp -----------------H---HHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTT--TCCEEEEEECHHHHHHTT
T ss_pred -----------------H---HHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhc--CCCEEEEEECcCCCCccc
Confidence 0 0111222 579999999998763 2223344444443 899999999999865321
Q ss_pred H--hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 M--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ~--~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. .... ....+++++++||++|.|+.++++.+.+..+
T Consensus 128 i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 128 MKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 1 1111 2235789999999999999999999987664
No 142
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.76 E-value=6.6e-18 Score=156.12 Aligned_cols=164 Identities=21% Similarity=0.286 Sum_probs=102.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhh--HHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL--SVN 449 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~--~~~ 449 (549)
.+|+++|.+|+|||||+|++++.. +.....+|+|.+.....+. .+.+|||||+.....+... ..+.+ ...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-----~~~l~Dt~G~~~~~~~~~~--~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-----NHKIIDMPGFGFMMGLPKE--VQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-----TEEEEECCCBSCCTTSCHH--HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-----CEEEEECCCccccccCCHH--HHHHHHHHHH
Confidence 478999999999999999999875 6667778888776544331 6899999997543211100 01111 111
Q ss_pred HHHHH-HhcCCcEEEEEEcccc-----------CCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHH
Q 008909 450 RAFRA-IRRSDVVALVIEAMAC-----------ITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK 517 (549)
Q Consensus 450 ~~~~~-~~~ad~~llVvD~~~~-----------~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 517 (549)
..++. ...++++++|+|.... ....+..++..+...++|+++|+||+|+.... ....+.+.+.
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~ 148 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEK 148 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHH
Confidence 12222 3445566666665431 01112233445556689999999999997653 1112333333
Q ss_pred HhcCC---CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 518 LRALD---WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~~~---~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.... ..+++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 149 FEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 33100 12579999999999999999998754
No 143
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.76 E-value=2.7e-18 Score=159.72 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=102.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+|+++|.+|+|||||+|++++.........++++.+.....+.. ++. .+.+|||+|..... .. +
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~----------~~-~ 73 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGEN----------EW-L 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC--------------CT-T
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchh----------hh-H
Confidence 4689999999999999999999743322334444555554444443 443 56789999985411 00 1
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
...+++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+...+.... ... +.++...+
T Consensus 74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~-----~~~-~~~a~~~~ 145 (192)
T 2cjw_A 74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV-----SEG-RAXAVVFD 145 (192)
T ss_dssp --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH-----HHH-HHHHHHTT
T ss_pred --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH-----HHH-HHHHHHhC
Confidence 112568899999999998855444433 4444543 2689999999999865333221 111 12222234
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||++|.||+++|+.+.+.+
T Consensus 146 ~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CceEEeccccCCCHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.76 E-value=4.5e-18 Score=170.16 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=118.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||+|++++.....+...+++|++.........++.++.+|||||+.++. +.+....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~ 73 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM---------ENYFTKQ 73 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH---------HHHHTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh---------hhhhhhH
Confidence 3589999999999999999999875445556778888877766665457789999999997641 1111122
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHH---HHh--CCcEEEEEecccCCCCCchh-hhHHHHHHHHHHHhcCC-
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERI---EQE--GKGCLIVVNKWDTIPNKNQQ-TATYYEQDVREKLRALD- 522 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l---~~~--~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~l~~~~- 522 (549)
...+++++|++|+|+|++++.+.++.. |..++ ... ++|+++|+||+|+....... ........+.+.....+
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 334678999999999999876666653 33333 332 79999999999997632221 11122344555556555
Q ss_pred -CCCEEEEccccCCCHHHHHHHHHhh
Q 008909 523 -WAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 523 -~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
..+++++||++ .|+.++|..+.+.
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 37899999999 7899999887653
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.76 E-value=8.2e-20 Score=193.93 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=123.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
+.++|+++|++|+|||||+++|++.. +.....+|+|.+.....+...++.++.+|||||+.+|.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------- 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------- 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------
Confidence 35689999999999999999999764 344567888888766666555677899999999988754321
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC-CCCCEEE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-DWAPIVY 528 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~ 528 (549)
++++.+|++|+|+|++++...++...+..+...++|+++|+||+|+...........+. .....+... ...++++
T Consensus 71 ---~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~-~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 71 ---RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELL-AYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp ---SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHH-HTTSCCCCSSSSEEECC
T ss_pred ---HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHH-hhhhhHHhcCCCceEEE
Confidence 24688999999999999999999999999999999999999999997543322211111 000001111 2347999
Q ss_pred EccccCCCHHHHHHHHHhhh
Q 008909 529 STAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 529 iSA~~g~~v~~L~~~l~~~~ 548 (549)
+||++|.|+++|+++|..++
T Consensus 147 vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 147 VSALTGENMMALAEATIALA 166 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHH
T ss_pred EECCCCCCchhHHHHHHHhh
Confidence 99999999999999997653
No 146
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.6e-18 Score=157.89 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=103.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||++++++.... ....+ ++.+.....+... ....+.+|||||+.+ . .
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~--------------~ 90 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDP-TLESTYRHQATIDDEVVSMEILDTAGQED-T--------------I 90 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCT-TCCEEEEEEEEETTEEEEEEEEECCCCCC-C--------------H
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-cccCC-CCCceEEEEEEECCEEEEEEEEECCCCCc-c--------------c
Confidence 468999999999999999999987532 22222 2222223223322 235789999999954 1 1
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...+.... .+..+..... +.
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~-----~~~~~~~~~~-~~ 164 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST-----EEGEKLATEL-AC 164 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCH-----HHHHHHHHHH-TS
T ss_pred chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCH-----HHHHHHHHHh-CC
Confidence 133467899999999999875443332 34444444 3789999999999976433221 1122222222 35
Q ss_pred CEEEEccccCC-CHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQ-SVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~-~v~~L~~~l~~~~ 548 (549)
+++++||++|. ||+++|++|.+.+
T Consensus 165 ~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 165 AFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp EEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred eEEEECCCcCCcCHHHHHHHHHHHH
Confidence 89999999999 9999999997653
No 147
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.4e-18 Score=159.87 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++.... ....+..+.......+.+++ ..+.+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 80 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL------------- 80 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-------------
Confidence 468999999999999999999976522 12222222333334445544 56899999998654331
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~~ 317 (549)
....+..+|++|+|+|++.+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 81 -------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 81 -------------------------TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp -------------------------HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred -------------------------hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 22557889999999998764332221 2223333321 3689999999999854
Q ss_pred hhH--HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGI--MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~--~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ..... ....+++++++||++|.|+.++++.+.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 321 11122 22356789999999999999999999887764
No 148
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.76 E-value=1.2e-17 Score=150.22 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=104.0
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+|+++|.+|+|||||+|++++.... ....+++.+.....+...+ ...+.+|||||+.++.. .
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------------~ 67 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------------M 67 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH--------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH--------------H
Confidence 47999999999999999999986432 2233344443333333322 34578999999865421 1
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhH-HHHHHHHHHh----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~l~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++++|+|++++.+... ..++..+... +.|+++|+||+|+..... . .....+..... +.+
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~-~-----~~~~~~~~~~~-~~~ 140 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV-E-----SRQAQDLARSY-GIP 140 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS-C-----HHHHHHHHHHH-TCC
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhccc-C-----HHHHHHHHHHc-CCe
Confidence 2235789999999999987544333 3355555443 799999999999876321 1 11222222222 358
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.|+++++++|.+.+
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 141 YIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998753
No 149
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.76 E-value=2.1e-18 Score=162.27 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=107.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||++++++... .....+.+..+. ...+...+ ...+.+|||||+.++..+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------- 93 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR----------- 93 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTG-----------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHH-----------
Confidence 346899999999999999999998653 233333333332 33333222 3478999999997653311
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCc----------hhhhHHHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKN----------QQTATYYEQDV 514 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~ 514 (549)
..+++.+|++|+|+|++++.+.+.. .|+..+... +.|+++|+||+|+..... ..+. .++.
T Consensus 94 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~~ 167 (205)
T 1gwn_A 94 ---PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS---YDQG 167 (205)
T ss_dssp ---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCC---HHHH
T ss_pred ---HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCC---HHHH
Confidence 1146899999999999986554544 355666653 789999999999964210 0011 1223
Q ss_pred HHHHhcCCCCCEEEEccc-cCCCHHHHHHHHHhh
Q 008909 515 REKLRALDWAPIVYSTAI-AGQSVDKYVLYLATS 547 (549)
Q Consensus 515 ~~~l~~~~~~~~i~iSA~-~g~~v~~L~~~l~~~ 547 (549)
.+.....+..++++|||+ +|.||+++|+.|.+.
T Consensus 168 ~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 168 ANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 333333344689999999 689999999999875
No 150
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.76 E-value=3.9e-18 Score=177.33 Aligned_cols=161 Identities=16% Similarity=0.227 Sum_probs=122.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcC---C----Cee---e------cCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGE---D----RTI---V------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~---~----~~~---~------~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
...+|+++|++++|||||+++|++. . .+. . ....|+|++.....+. .++..+.+|||||+.+|
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChHHH
Confidence 3468999999999999999999873 1 010 0 0134777777655554 35688999999999765
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
...+..+++.+|++|+|+|++++...+..+++..+...++| +++|+||+|+.... ...+.+..
T Consensus 89 --------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~--~~~~~~~~ 152 (405)
T 2c78_A 89 --------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP--ELLDLVEM 152 (405)
T ss_dssp --------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH--HHHHHHHH
T ss_pred --------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH--HHHHHHHH
Confidence 23456678999999999999999899999999988888999 88999999997521 22223344
Q ss_pred HHHHHHhcCCC----CCEEEEccccCCC------------------HHHHHHHHHhh
Q 008909 513 DVREKLRALDW----APIVYSTAIAGQS------------------VDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~~~~----~~~i~iSA~~g~~------------------v~~L~~~l~~~ 547 (549)
++.+.+...+. .+++++||++|.| +.+|++.|...
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 209 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY 209 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence 56666665553 6899999999987 88899888764
No 151
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=7.6e-18 Score=157.02 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=102.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec-cCCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++... .....+...... ...... .....+.+|||||+.++..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPA------------- 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC-CCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHH-------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC-CCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHH-------------
Confidence 346899999999999999999998643 222222222221 112221 1234789999999865421
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH-----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
....+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+.... .. ...........
T Consensus 72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~-----~~~~~~~~~~~- 143 (199)
T 2gf0_A 72 -MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VD-----TREAQAVAQEW- 143 (199)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SC-----HHHHHHHHHHH-
T ss_pred -HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cC-----HHHHHHHHHHh-
Confidence 123357899999999999875433322 24444443 268999999999997532 11 11112222222
Q ss_pred CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 523 WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.+++++||++|.||++||++|.+.+
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 144 KCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999998754
No 152
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=4.3e-18 Score=169.64 Aligned_cols=162 Identities=31% Similarity=0.511 Sum_probs=120.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEccccc-ccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~i~~~~~~ 241 (549)
..+|+|+|++|||||||+|+|++.....+++.+++|+....+.+..++.++.++||||+. .... .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~---~----------- 73 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR---A----------- 73 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH---H-----------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh---h-----------
Confidence 457999999999999999999999877778888999888777777888899999999986 2100 0
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCCh--hh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR--KG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~--~~ 319 (549)
+...+...+..++..+|++++|+|++. ++..+..+.+.+... +.|+++++||+|+.. ..
T Consensus 74 ----------------l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~~ 134 (301)
T 1ega_A 74 ----------------INRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG--KAPVILAVNKVDNVQEKAD 134 (301)
T ss_dssp ----------------HHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS--SSCEEEEEESTTTCCCHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc--CCCEEEEEECcccCccHHH
Confidence 000111122355678999999999987 777776666666543 789999999999976 22
Q ss_pred HHhHHHHHH--cCC-CceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IMQVSEFWS--LGF-SPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~~~~~~~~--~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.......+. .++ .++++||++|.|+.++++.+...++.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 222222222 344 58999999999999999999877653
No 153
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.76 E-value=1.8e-18 Score=174.53 Aligned_cols=162 Identities=21% Similarity=0.269 Sum_probs=119.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
...|+++|.+|+|||||+|++++.. ..+..++++|.+.....+.+.++..+.||||||+.+... ........
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~-------~~~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH-------QGVGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT-------CTTTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCccccc-------ccchhHHH
Confidence 4579999999999999999999865 456788889988877777665558899999999865321 01112345
Q ss_pred HHHHHhcCCcEEEEEEccc---cCCHhHH-HHHHHHHHh-----CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC
Q 008909 451 AFRAIRRSDVVALVIEAMA---CITEQDC-RIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~---~~~~~~~-~~l~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~ 521 (549)
.+++++.+|++|+|||+++ +...++. .++.++... ++|+++|+||+|+.... +..+.+.+.+...
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~l~~~ 303 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA------ENLEAFKEKLTDD 303 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH------HHHHHHHHHCCSC
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH------HHHHHHHHHhhcC
Confidence 6777889999999999986 3333443 355666653 68999999999997531 1123333333321
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||+++.|+++|+.+|.+.+
T Consensus 304 --~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 304 --YPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp --CCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred --CCEEEEECCCCcCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 154
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=5.3e-18 Score=175.63 Aligned_cols=164 Identities=23% Similarity=0.284 Sum_probs=118.5
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc-eEEEEEcccccccCCCCcchhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
....++|+++|++|+|||||+|+|++.....++..+++|.+.....+.+.+. .+.+|||||+.++.......
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~------- 103 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLR------- 103 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCC-------
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHH-------
Confidence 3456799999999999999999999987667788999999999888888776 89999999998765433211
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
.+.+...+..+|++|+|+|+ +.......+..++.+. +.|+++|+||+|+...
T Consensus 104 ------------------------~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 104 ------------------------VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM--EIPFVVVVNKIDVLGE 155 (423)
T ss_dssp ------------------------HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT--TCCEEEECCCCTTTTC
T ss_pred ------------------------HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc--CCCEEEEEeCcCCCCc
Confidence 12345677889999999998 5566666777777766 8999999999999765
Q ss_pred hHHhHHHHH--HcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 GIMQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~~~~~~~~~--~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
........+ ..+++++++||++|.|++++++.+.+.++..
T Consensus 156 ~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 156 KAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 433222222 2366899999999999999999999888543
No 155
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=155.41 Aligned_cols=157 Identities=20% Similarity=0.170 Sum_probs=111.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+++|.+|||||||+|+|++.. ......++.+.+.....+.+++ ..+.+|||||...+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 80 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------------- 80 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh--------------
Confidence 5789999999999999999999765 2334455666666666677777 4689999999765432
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
....++..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 81 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 81 ------------------------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp ------------------------THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred ------------------------hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 123567889999999998864332221 223333332 237899999999998754
Q ss_pred hHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
... .... ....+++++++||++|.|+.+++..+.+.+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp CCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 321 1112 234577999999999999999999998877653
No 156
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=8.5e-18 Score=158.56 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=109.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||...+....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 86 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT----------- 86 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH-----------
Confidence 367999999999999999999997652 233445555566666667777 568999999987643321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~ 317 (549)
..++..+|++|+|+|+..+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 87 ---------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 87 ---------------------------TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred ---------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 2556889999999998764332221 233333332 23689999999999853
Q ss_pred hhH--HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~--~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... .....+ ...+++++++||++|.|+.+++..+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 221 111112 2346789999999999999999999887754
No 157
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.75 E-value=2.3e-18 Score=163.77 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=110.7
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
....+|+++|.+|+|||||+|+++... .....+..|++.......+. ..+..+.+|||||+.++..+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~----------- 80 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGL----------- 80 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCC-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHH-----------
Confidence 345689999999999999999965432 23456677777776554443 23567999999998765321
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|++++.+.+.. .|+..+... ++|+++|+||+|+.......... ..... .+.
T Consensus 81 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-------~~~~~-~~~ 149 (221)
T 3gj0_A 81 ---RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI-------VFHRK-KNL 149 (221)
T ss_dssp ---CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGC-------CHHHH-HTC
T ss_pred ---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHH-------HHHHH-cCC
Confidence 12367899999999999986544443 355555554 78999999999997543322111 11111 235
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 150 ~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 150 QYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp EEEECBGGGTBTTTHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998753
No 158
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=2.4e-18 Score=157.98 Aligned_cols=155 Identities=19% Similarity=0.082 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+++|.+|||||||+|+|++.. ....+.+++.......+.+++ ..+.+|||||...+.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 72 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ----------- 72 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH-----------
Confidence 5689999999999999999999654 233444444444455566666 4568999999876543322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
..+..+|++++|+|.+.+.+..... +...+... ..+.|+++|+||+|+..
T Consensus 73 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 73 ---------------------------TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp ---------------------------GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred ---------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 3456799999999987643222211 22222221 23689999999999864
Q ss_pred hhHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... .... ....+.+++++||++|.|+.+++..+.+.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3211 1111 23457789999999999999999999887764
No 159
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=3.6e-18 Score=166.82 Aligned_cols=169 Identities=16% Similarity=0.189 Sum_probs=119.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCC-ccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..++|+|+|++|||||||+|+|++.........+. +|..+..+.+.+.+..+.+|||||+.++......+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~-------- 92 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALY-------- 92 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHH--------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHH--------
Confidence 46789999999999999999999887555555555 788888888888999999999999987544322111
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccC---CCeEEEEec-cCCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVN-KCESP 316 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~---~~p~ivv~N-K~D~~ 316 (549)
..+.+.+..++..+|++|+|+|+.. +......+..++.+... ..|+++++| |+|+.
T Consensus 93 -------------------~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 93 -------------------KEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp -------------------HHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred -------------------HHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 1123344556788999999999975 66665566666655321 356666666 99987
Q ss_pred hhhHHh------------HHHHHHcC---CCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 317 RKGIMQ------------VSEFWSLG---FSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 317 ~~~~~~------------~~~~~~~~---~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
...... ........ +..+++||++|.|+.+++..+...+...
T Consensus 153 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 153 GGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 543222 11111111 3338899999999999999998887653
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=4.8e-19 Score=185.83 Aligned_cols=161 Identities=28% Similarity=0.381 Sum_probs=114.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+|+|++|||||||+|+|++.....+.+.+++|.+.....+.++|.++.+|||||+.++....+ .+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve----~~------- 292 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVE----KI------- 292 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHH----HH-------
Confidence 4579999999999999999999887677888999999998888899999999999999965332111 00
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (549)
-.+.+...+..+|++|+|+|++.+....+..+...+. .+|+++|+||+|+.......
T Consensus 293 -------------------gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~Dl~~~~~~~ 349 (462)
T 3geh_A 293 -------------------GVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKIDLVEKQLIT 349 (462)
T ss_dssp -------------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTTSSCGGGST
T ss_pred -------------------HHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCCCCcchhhH
Confidence 0123345678899999999999887776655555543 57999999999997654322
Q ss_pred HHHHHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 323 ~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
....+..+.+++++||++|.|++++++.+.+.+..
T Consensus 350 ~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 350 SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 11111134578999999999999999999887653
No 161
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.75 E-value=1.4e-17 Score=154.21 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=101.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
..+|+++|.+|+|||||+|++++.... ....+++.+.....+...+ ...+.+|||||+.++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------------- 84 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------------- 84 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH--------------
Confidence 468999999999999999999986432 2333444444443443322 24589999999865422
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
....+++.+|++++|+|++++.+..+.. |+..+.. .++|+++|+||+|+.... .. .+.+.+.....+ .
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~-----~~~~~~~~~~~~-~ 157 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-VD-----TKQAHELAKSYG-I 157 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SC-----HHHHHHHHHHHT-C
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-CC-----HHHHHHHHHHcC-C
Confidence 1223578999999999998764434433 4445544 278999999999987622 11 122223333323 5
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|+++++++|.+.+
T Consensus 158 ~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 158 PFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 162
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=9.4e-18 Score=152.22 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=106.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|.+|+|||||+|+|++..... ...|.......+.+++..+.+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------------- 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY--------------- 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC----CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGG---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC----cCCcCccceEEEEECCEEEEEEECCCChhhhHH---------------
Confidence 5789999999999999999998765322 122344555667778889999999998653321
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
...++..+|++++|+|++.+.+.... .+...+.. ...+.|+++|+||+|+....
T Consensus 68 -----------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 68 -----------------------WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp -----------------------GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred -----------------------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 11456789999999999876443322 22222222 12478999999999997642
Q ss_pred H-HhHHHHH------HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 I-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~-~~~~~~~------~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. ....... ..+++++++||++|.|+.++++.+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 125 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 1 1111111 12446899999999999999999987765
No 163
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=157.41 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=106.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..++|+++|.+|||||||+|+|++....... ...|.......+.+++..+.+|||||...+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------------- 83 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNL-------------- 83 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGG--------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHHH--------------
Confidence 4679999999999999999999987522211 234555666677788899999999997653321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHHcc---CCCeEEEEeccCCCC
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNY---MDKFIILAVNKCESP 316 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~---~~~p~ivv~NK~D~~ 316 (549)
....+..+|++|+|+|++.+.+... ..+...+.... .+.|+++|+||+|+.
T Consensus 84 ------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 84 ------------------------WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp ------------------------GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred ------------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 1145678999999999876422222 11222222211 378999999999997
Q ss_pred hhhH-HhHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 317 RKGI-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 317 ~~~~-~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... ........ .+++++++||++|.|+.++++.+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 5421 12222221 24578999999999999999999877653
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=1e-17 Score=173.64 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=120.4
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCC------Ce---------eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhh
Q 008909 372 PAIAIVGRPNVGKSSILNALVGED------RT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~------~~---------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~ 436 (549)
.+|+++|++++|||||+++|++.. .+ ......|+|++.....+. .++..+.+|||||+.+|.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~~f~-- 80 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHADYV-- 80 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHHHHH--
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChHHHH--
Confidence 589999999999999999998731 00 011245778877555554 356789999999996642
Q ss_pred ccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHHHHH
Q 008909 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVR 515 (549)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 515 (549)
..+..+++.+|++|+|||++++...+..+.+..+...++| +++|+||+|+.... ...+.+.+++.
T Consensus 81 ------------~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~--~~~~~~~~~~~ 146 (397)
T 1d2e_A 81 ------------KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS--EMVELVELEIR 146 (397)
T ss_dssp ------------HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH--HHHHHHHHHHH
T ss_pred ------------HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH--HHHHHHHHHHH
Confidence 2445568899999999999999999999988888888999 68999999997521 22223345566
Q ss_pred HHHhcCC----CCCEEEEccccCCC----------HHHHHHHHHhh
Q 008909 516 EKLRALD----WAPIVYSTAIAGQS----------VDKYVLYLATS 547 (549)
Q Consensus 516 ~~l~~~~----~~~~i~iSA~~g~~----------v~~L~~~l~~~ 547 (549)
+.++..+ ..+++++||++|.| +.+|++.|.+.
T Consensus 147 ~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 6666655 36899999999775 89999998764
No 165
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=153.14 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=106.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|+|||||+|+|++.........+.++.......+.+++. .+.+|||||...+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------- 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS------------- 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------------
Confidence 35689999999999999999999876433333444555554445566664 689999999765322
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-CCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ivv~NK~D~~~ 317 (549)
.....+..+|++++|+|++.+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 76 -------------------------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 76 -------------------------VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ----------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred -------------------------HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 122456789999999998864332221 2333333322 4789999999999875
Q ss_pred hhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... .....+ ...+++++++||++|.|+.++++.+.+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 321 111122 2357789999999999999999999887753
No 166
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.8e-17 Score=153.26 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
...+|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------------- 76 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSS-------------- 76 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CGG--------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHHH--------------
Confidence 35789999999999999999999776544433333 334556678899999999998653321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
....+..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 77 ------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 77 ------------------------WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp ------------------------GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred ------------------------HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 12456789999999999876443322 122222221 257899999999999753
Q ss_pred hH-HhHHHHH------HcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~-~~~~~~~------~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ....... ..+++++++||++|.|++++++.+.+.+..
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 133 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 21 1122222 124578999999999999999999887654
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.74 E-value=1.9e-17 Score=169.33 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=117.7
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|++++|||||+++|+ ..|+|++.....+. +++.++.+|||||+.+| ...+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f--------------~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT--------------LKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC--------------HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH--------------HHHHH
Confidence 89999999999999999998 34667776665555 36778999999999775 23455
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcE-EEEEe-cccCCCCCchhhhHHHHHHHHHHHhcCC--CCCEEE
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGC-LIVVN-KWDTIPNKNQQTATYYEQDVREKLRALD--WAPIVY 528 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~-ivv~N-K~Dl~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~ 528 (549)
..++.+|++|+||| +.+...+..+++..+...++|. |+|+| |+|+ ... ..+...+++.+.++... ..++++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~---~~~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMH---AIDELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHH---HHHHHHHHHHHHTTTSTTTTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHH---HHHHHHHHHHHHHHhcCCCceEEEe
Confidence 67899999999999 8888889999998888889998 99999 9999 421 12233456666666543 468999
Q ss_pred --Ecccc---CCCHHHHHHHHHhhh
Q 008909 529 --STAIA---GQSVDKYVLYLATSF 548 (549)
Q Consensus 529 --iSA~~---g~~v~~L~~~l~~~~ 548 (549)
+||++ |.|+++|++.|.+.+
T Consensus 154 ~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 154 LNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred cccccccCcCCCCHHHHHHHHHhhc
Confidence 99999 999999999987653
No 168
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.74 E-value=1.6e-19 Score=168.98 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=103.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
...+|+++|.+|+|||||+|++++.. +.....++++.+.....+...+ ...+.+|||||+.++....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 99 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT----------- 99 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH-----------
Confidence 35689999999999999999999764 3333345555555554554322 2478999999997754321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
..+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+...+..... ...+... ..+.
T Consensus 100 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~-----~~~~~~~-~~~~ 170 (199)
T 3l0i_B 100 ---SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT-----TAKEFAD-SLGI 170 (199)
T ss_dssp ---CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC-----C-CHHHH-TTTC
T ss_pred ---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH-----HHHHHHH-HcCC
Confidence 1257899999999999986554443 355555544 7899999999999765432211 1112222 3346
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||+++|++|.+.+
T Consensus 171 ~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 171 PFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CBCCCCC---HHHHHHHHHHTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998764
No 169
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=1.1e-17 Score=164.76 Aligned_cols=172 Identities=12% Similarity=0.156 Sum_probs=102.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecC-------CCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP-------ISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGS 441 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~-------~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~ 441 (549)
..+|+++|.+|+|||||+|++++...+.... .++++.+.....+. .++. ++.||||||+.++........
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK-EGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEEC-C--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEe-cCCeEEEEEEEECCCccccccchhhHH
Confidence 4689999999999999999999887665543 44555555444443 2443 899999999965421100001
Q ss_pred hhhhhHHHHHHHHHhc-------------CCcEEEEEEccc-cCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhh
Q 008909 442 TTEALSVNRAFRAIRR-------------SDVVALVIEAMA-CITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTA 507 (549)
Q Consensus 442 ~~e~~~~~~~~~~~~~-------------ad~~llVvD~~~-~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~ 507 (549)
....+...+...+++. +|+++++++.+. ++...+..+++.+.. ++|+|+|+||+|+..... .
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e---~ 162 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEE---C 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHH---H
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHH---H
Confidence 1111112222333343 789999997654 788999999988888 899999999999975432 2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 508 TYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....+.+.+.+...+ .+++++||+++.|+++|+++|.+.+
T Consensus 163 ~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 233445666666544 5789999999999999999997753
No 170
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.74 E-value=8.3e-18 Score=169.72 Aligned_cols=163 Identities=25% Similarity=0.322 Sum_probs=119.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC-ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+.|+|+|.+|||||||+|+|++.. ..+.+++++|.....+.+.+.+ ..+.+|||||+.........
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~----------- 225 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG----------- 225 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-----------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-----------
Confidence 5789999999999999999999875 4568899999999988888876 88999999998653221110
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCC---CCCcchH-HHHHHHHHc---cCCCeEEEEeccCC
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA---GLTAADE-EIADWLRKN---YMDKFIILAVNKCE 314 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~---~~~~~~~-~~~~~l~~~---~~~~p~ivv~NK~D 314 (549)
+...+++.+..++++|+|+|++. .....+. .+...+... ..++|+++|+||+|
T Consensus 226 --------------------l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 226 --------------------LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp --------------------THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred --------------------hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 12345567788999999999875 2222222 233344442 24789999999999
Q ss_pred CChhhHHhHHHH-HHcC--CCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 315 SPRKGIMQVSEF-WSLG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 315 ~~~~~~~~~~~~-~~~~--~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
+...... ...+ .... .+++++||+++.|+++|+..+.+.+...
T Consensus 286 l~~~~e~-~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 286 MPEAAEN-LEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp STTHHHH-HHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred CCCCHHH-HHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 9764321 1112 1222 5789999999999999999999888653
No 171
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=5.2e-18 Score=166.23 Aligned_cols=156 Identities=23% Similarity=0.327 Sum_probs=112.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|.+|||||||+|+|+|.. ..+++++|+|.+...+.+.. +..+.+|||||+.++..... .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~--~e--------- 69 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSP--EA--------- 69 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSH--HH---------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCCh--HH---------
Confidence 4689999999999999999999875 56788899999888777766 78899999999987543211 00
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
.....++ ..+|++++|+|++.. .....+...+... +.|+++|+||+|+.....
T Consensus 70 ---------------------~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 70 ---------------------KVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIET--GIPVTIALNMIDVLDGQG 124 (272)
T ss_dssp ---------------------HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT--CSCEEEEEECHHHHHHTT
T ss_pred ---------------------HHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhc--CCCEEEEEEChhhCCcCC
Confidence 1112233 369999999998752 1222333444443 899999999999864321
Q ss_pred H--hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 M--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ~--~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. .... ....+++++++||++|.|++++++.+.+.+.
T Consensus 125 ~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 125 KKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 1 1111 1234789999999999999999999977553
No 172
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=1.5e-17 Score=152.98 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=104.8
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
....+|+++|.+|||||||+|+|++.......+..+.+ ...+.+++..+.+|||||...+....
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~------------ 82 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSSW------------ 82 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGGTCGG------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhHHHHH------------
Confidence 34679999999999999999999988764455555433 34566788899999999987643321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
..++..+|++++|+|++.+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 83 --------------------------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 83 --------------------------NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp --------------------------GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred --------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 1456789999999999876443322 122222221 35789999999999875
Q ss_pred hhH-HhHHHHH------HcCCCceEeeccCCCChhhhHHHHHH
Q 008909 318 KGI-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 318 ~~~-~~~~~~~------~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
... ....... ..+++++++||++|.|+.++++.+.+
T Consensus 137 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 137 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 321 1112221 12346899999999999999988864
No 173
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=155.52 Aligned_cols=157 Identities=14% Similarity=0.075 Sum_probs=106.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+++|++.. ....+.+++.......+.+++. .+.+|||||...+.....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 86 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP---------- 86 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH----------
Confidence 46789999999999999999999765 3344555555555556667775 567999999976543221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
.++..+|++|+|+|++.+.+.... .+...+.....+.|+++|+||+|+..
T Consensus 87 ----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 87 ----------------------------LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred ----------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 346789999999998865433332 23444544445889999999999865
Q ss_pred hh---------------HHhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 318 KG---------------IMQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 318 ~~---------------~~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.. ......+ ...+. +++++||++|.|+.++++.+.+.+...
T Consensus 139 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 21 0111112 12355 789999999999999999998776543
No 174
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=1.9e-17 Score=152.76 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=106.6
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
....+|+++|.+|||||||+|+|++... ... ..|.......+.+++..+.+|||||+..+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------- 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV---DTI-SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSY------------- 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC---SSC-CCCSSEEEEEEEETTEEEEEEEECCSHHHHTT-------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC---Ccc-cccCccceEEEEECCEEEEEEECCCCHhHHHH-------------
Confidence 3467899999999999999999998751 111 22344555666778889999999998653321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
....+..+|++++|+|++.+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 79 -------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 79 -------------------------WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp -------------------------GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred -------------------------HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 12456789999999998875433221 122222221 24789999999999875
Q ss_pred hhHH-hHHHHH------HcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIM-QVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~-~~~~~~------~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... ...... ..+++++++||++|.|++++++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 134 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 4221 112221 124468999999999999999999887753
No 175
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=1.3e-17 Score=150.21 Aligned_cols=151 Identities=20% Similarity=0.234 Sum_probs=102.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
.+|+++|.+|||||||+|+|++.... ...| |.......+.+.+..+.+|||||...+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------------ 58 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------------------ 58 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhhH------------------
Confidence 37999999999999999999876532 2222 4445555667778899999999985421
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCChhhH
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~~~~ 320 (549)
......+..+|++++|+|++.+.+.... .++..+.. ...+.|+++|+||+|+.....
T Consensus 59 --------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (164)
T 1r8s_A 59 --------------------PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118 (164)
T ss_dssp --------------------HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred --------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC
Confidence 1233567889999999999875332221 12222221 224789999999999975421
Q ss_pred -HhHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 -MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 -~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
........ .+++++++||++|.|+.++++.+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 11111111 2346899999999999999999987664
No 176
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=8e-18 Score=152.01 Aligned_cols=154 Identities=19% Similarity=0.118 Sum_probs=91.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++.......+.++++.. ..+.+++ ..+.+|||||...+...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~------------- 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWL------------- 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhh-------------
Confidence 46899999999999999999998765555555665543 2334444 45789999998654322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
...++..+|++++|+|.+.+.+.... .+...+... ..+.|+++|+||+|+.+
T Consensus 66 -------------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 66 -------------------------PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp --------------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred -------------------------hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 22456789999999998764322221 122233322 24789999999999875
Q ss_pred hhHH---hH-HHHHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIM---QV-SEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~---~~-~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... .. ......+.+++++||++|.|++++++.+.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 3211 11 1123456789999999999999999999887653
No 177
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=2.2e-17 Score=151.74 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=103.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
...+|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+..+....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 79 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYW------------- 79 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTTG-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHHH-------------
Confidence 46789999999999999999999776433333333 4445567778899999999997643321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
...+..+|++++|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 80 -------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 80 -------------------------RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp -------------------------GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred -------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 1446789999999998876443321 122222221 257899999999998753
Q ss_pred hH-HhHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~-~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ........ .+++++++||++|.|++++++.+.+.+.+
T Consensus 135 ~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 135 LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 21 11222211 13368999999999999999999887754
No 178
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.73 E-value=1.4e-17 Score=155.23 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=106.0
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
...++|+|+|.+|||||||+|+|++.....+.. ..|.......+...+..+.+|||||+..+....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------ 80 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI--TATVGYNVETFEKGRVAFTVFDMGGAKKFRGLW------------ 80 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CC--CCCSSEEEEEEEETTEEEEEEEECCSGGGGGGG------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccc--ccccceeEEEEEeCCEEEEEEECCCCHhHHHHH------------
Confidence 346799999999999999999999876433211 123334445566778899999999987643221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--c-------CCCeEEEEe
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--Y-------MDKFIILAV 310 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~-------~~~p~ivv~ 310 (549)
..++..+|++|+|+|++.+.+.... .++..+... . .+.|+++|+
T Consensus 81 --------------------------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 134 (199)
T 4bas_A 81 --------------------------ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134 (199)
T ss_dssp --------------------------GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEE
T ss_pred --------------------------HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEE
Confidence 1446789999999999875433222 122222211 0 278999999
Q ss_pred ccCCCChhhH----HhHHHH----HHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 311 NKCESPRKGI----MQVSEF----WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 311 NK~D~~~~~~----~~~~~~----~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
||+|+..... ...... ...+++++++||++|.|++++++.+.+.+...
T Consensus 135 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 135 NKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp ECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 9999876421 111111 12455789999999999999999998877643
No 179
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=1.3e-17 Score=151.03 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=103.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCce-eeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+|+++|.+|+|||||+|+|++.... ...+..+.+... ..+.+.+ ..+.+|||||+..+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~------------- 70 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFRA------------- 70 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGGG-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhhc-------------
Confidence 468999999999999999999977521 122333333322 2334444 5789999999865322
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~ 317 (549)
.....+..+|++++|+|++.+.+.... .+...+... ....|+++|+||+|+..
T Consensus 71 -------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 71 -------------------------LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp -------------------------GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred -------------------------ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 122557889999999998775433322 233334332 35789999999999975
Q ss_pred hhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... .....+ ...+.+++++||++|.|+.++++.+.+.+.
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 321 111222 235678999999999999999999887653
No 180
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=167.14 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=103.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.+|+|||||++++++...... .| |+......+. ..+..+.||||||+.++..+
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~-------------- 225 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVE-YKNISFTVWDVGGQDKIRPL-------------- 225 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEE-ETTEEEEEEECC-----CCS--------------
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEe-cCcEEEEEEECCCCHhHHHH--------------
Confidence 45899999999999999999998764332 23 3333333333 35678999999998765321
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHH-HHHHH-HHh---CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERI-EQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l-~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (549)
...+++.+|++|+|||++++.+..... ++..+ ... ++|++||+||+|+....... ++...+........+.+
T Consensus 226 ~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~ 302 (329)
T 3o47_A 226 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRHRNWY 302 (329)
T ss_dssp HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---HHHHHHTCTTCCSSCEE
T ss_pred HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHH---HHHHHhchhhhhcCCCE
Confidence 233678999999999998765544433 33333 322 78999999999997654321 12222221112223457
Q ss_pred EEEEccccCCCHHHHHHHHHhhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++++||++|.||++||++|.+.+
T Consensus 303 ~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 303 IQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 181
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=3.3e-17 Score=170.16 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=112.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCce--------------eeeeEEEEec----cCCCeEEEEeCCCcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT--------------RDAIDTEFTG----PEGQKFRLIDTAGIR 431 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt--------------~~~~~~~~~~----~~~~~i~l~DTpG~~ 431 (549)
...+|+++|++|+|||||+|+|++...........++ .+........ .....+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 3568999999999999999999984321111111111 0000000000 011578999999996
Q ss_pred chhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-CHhHHHHHHHHHHhC-CcEEEEEecccCCCCCchhhhHH
Q 008909 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQQTATY 509 (549)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~l~~l~~~~-~p~ivv~NK~Dl~~~~~~~~~~~ 509 (549)
++ ...+..+++.+|++|+|+|++++. ..+..+++..+...+ .|+++|+||+|+..... ...
T Consensus 87 ~~--------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~---~~~ 149 (403)
T 3sjy_A 87 VL--------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE---ALS 149 (403)
T ss_dssp GG--------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH---HHH
T ss_pred HH--------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHH---HHH
Confidence 64 334666789999999999999987 778888888777766 48999999999976422 122
Q ss_pred HHHHHHHHHhcC--CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 510 YEQDVREKLRAL--DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 510 ~~~~~~~~l~~~--~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+++.+.+... ...+++++||++|.|+++|+++|.+.+
T Consensus 150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 344555666543 256899999999999999999998743
No 182
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.73 E-value=9.7e-18 Score=156.77 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=97.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.+|||||||+++|.+.......+ |.....+.+.+++..+.+|||||...+....
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------------- 86 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARRVW-------------- 86 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CCGG--------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHhhHHHH--------------
Confidence 5689999999999999999999876433322 3333456677888999999999987644321
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~~~ 319 (549)
..++..+|++++|+|++.+.+.... .++..+.. ...+.|+++|+||+|+....
T Consensus 87 ------------------------~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 142 (198)
T 1f6b_A 87 ------------------------KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142 (198)
T ss_dssp ------------------------GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred ------------------------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC
Confidence 1446789999999999865332221 12222221 12478999999999986521
Q ss_pred -HHhHHHHHH------------------cCCCceEeeccCCCChhhhHHHHHHH
Q 008909 320 -IMQVSEFWS------------------LGFSPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 320 -~~~~~~~~~------------------~~~~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
......+.. .+.+++++||++|.|++++++++.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 111222222 22368999999999999999988654
No 183
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.73 E-value=2.7e-17 Score=177.29 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=109.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCee--------------ecCCCCceeeeeEEEEecc--C--CCeEEEEeCCCccc
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTI--------------VSPISGTTRDAIDTEFTGP--E--GQKFRLIDTAGIRK 432 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~--------------~~~~~gtt~~~~~~~~~~~--~--~~~i~l~DTpG~~~ 432 (549)
..+++++|+.++|||||++++++..... .....|+|+......+.+. + +..++||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4689999999999999999998632111 0112466666544444432 2 35789999999987
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
|.. .+.++++.+|++|+|||++++...++...|..+...++|+|+|+||+|+..... +...+
T Consensus 84 F~~--------------ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~----~~v~~ 145 (599)
T 3cb4_D 84 FSY--------------EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADP----ERVAE 145 (599)
T ss_dssp GHH--------------HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCH----HHHHH
T ss_pred HHH--------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccH----HHHHH
Confidence 632 345678999999999999999999999988888889999999999999976532 22234
Q ss_pred HHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 513 DVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 513 ~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++.+.+. ....+++++||++|.|+++|+++|.+.+
T Consensus 146 ei~~~lg-~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 146 EIEDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp HHHHHTC-CCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHhC-CCcceEEEeecccCCCchhHHHHHhhcC
Confidence 4444442 2223699999999999999999997754
No 184
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.73 E-value=1.8e-17 Score=176.02 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=112.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCC------------------------------eeecCCCCceeeeeEEEEeccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDR------------------------------TIVSPISGTTRDAIDTEFTGPEGQ 420 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~------------------------------~~~~~~~gtt~~~~~~~~~~~~~~ 420 (549)
..+|+++|.+|+|||||+|+|++... .......|+|++.....+.. ++.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 111 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCc
Confidence 46899999999999999999986411 11223458888887777764 678
Q ss_pred eEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-------CCHhHHHHHHHHHHhCC-cEEEE
Q 008909 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGK-GCLIV 492 (549)
Q Consensus 421 ~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-------~~~~~~~~l~~l~~~~~-p~ivv 492 (549)
++.||||||+.+| ...+..+++.+|++|+|||++++ +..+..+.+..+...+. |+|||
T Consensus 112 ~~~iiDTPG~~~f--------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvv 177 (483)
T 3p26_A 112 NFTIVDAPGHRDF--------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIA 177 (483)
T ss_dssp EEEEECCCCCGGG--------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCcHHH--------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEE
Confidence 9999999999765 33456688999999999999986 45677777777777774 59999
Q ss_pred EecccCCCCCchhhhHHHHHHHHHHHhcCC----CCCEEEEccccCCCHHH
Q 008909 493 VNKWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDK 539 (549)
Q Consensus 493 ~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~----~~~~i~iSA~~g~~v~~ 539 (549)
+||+|+..... ...+++.+.+.+.+...+ ..+++++||++|.|+++
T Consensus 178 iNK~Dl~~~~~-~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 178 MNKMDNVDWSQ-QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EECGGGGTTCH-HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EECcCcccchH-HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99999976332 223344555555555433 35799999999999985
No 185
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=2.2e-17 Score=152.54 Aligned_cols=159 Identities=29% Similarity=0.392 Sum_probs=113.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|.+|||||||+|+|++.. ..+...+++|.+...+.+.+++..+.+|||||+..+..... .+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~--------- 74 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DE--------- 74 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH--HH---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH--HH---------
Confidence 4689999999999999999999875 56777889898888888888899999999999876532210 00
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
.....++ ..++++++|+|.+.. .....+...+.. .+.|+++|+||+|+.....
T Consensus 75 ---------------------~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 75 ---------------------IIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLME--MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp ---------------------HHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTT
T ss_pred ---------------------HHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHh--cCCCEEEEEEhhhcccccc
Confidence 0111222 358999999997641 112223333433 3789999999999864321
Q ss_pred H--hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 321 M--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 321 ~--~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
. ....+ ...+.+++++||++|.|+.++++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 130 IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 1 11122 23467899999999999999999998877643
No 186
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.73 E-value=1.3e-17 Score=166.22 Aligned_cols=171 Identities=22% Similarity=0.310 Sum_probs=111.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe-----eecCCCC----------------------ceeee-------------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSPISG----------------------TTRDA------------- 409 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~-----~~~~~~g----------------------tt~~~------------- 409 (549)
..++|+++|.+|+|||||+|++++.... .+...|+ +|++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999997654 2333443 33331
Q ss_pred ----------eEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEE-EEEEccccCCHhHH-H
Q 008909 410 ----------IDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVA-LVIEAMACITEQDC-R 477 (549)
Q Consensus 410 ----------~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~l-lVvD~~~~~~~~~~-~ 477 (549)
....+...+...+.||||||+.+...-. .....+......+..+++.++.++ +|+|+++++..++. .
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGD-QPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSS-SCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCC-CCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 1111111224689999999996421000 001112233445566778888776 79999987776664 5
Q ss_pred HHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC--CCCCEEEEccccCCCHHHHHHHHHh
Q 008909 478 IAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 478 ~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~--~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
+++.+...+.|+++|+||+|+....... .+.+...+... ++.+++++||++|.|+++|++.|.+
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGTDA-----RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTCCC-----HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCchH-----HHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 7777777789999999999997653311 11121111111 3457889999999999999998764
No 187
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.73 E-value=2e-17 Score=153.11 Aligned_cols=155 Identities=20% Similarity=0.263 Sum_probs=107.4
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
....+|+++|.+|||||||+|+|++.......+ |.......+.+++..+.+|||||+..+.....
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~----------- 84 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP----TVGVNLETLQYKNISFEVWDLGGQTGVRPYWR----------- 84 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS----STTCCEEEEEETTEEEEEEEECCSSSSCCCCS-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC----CCceEEEEEEECCEEEEEEECCCCHhHHHHHH-----------
Confidence 346789999999999999999998776433222 33344556677888999999999876544322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHH-ccCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRK-NYMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~-~~~~~p~ivv~NK~D~~~ 317 (549)
..+..+|++++|+|++.+.+.... .+...+.. ...+.|+++|+||+|+..
T Consensus 85 ---------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 85 ---------------------------CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp ---------------------------SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred ---------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 345789999999999876443321 12222221 124789999999999975
Q ss_pred hhH-HhHHHHH------HcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGI-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~-~~~~~~~------~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ....... ..+++++++||++|.|++++++.+.+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 138 AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 421 1111111 123468999999999999999999887754
No 188
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=2.2e-17 Score=150.86 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=106.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++... .....+..+.+.....+.+++ ..+.+|||||...+...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------- 79 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------- 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH-------------
Confidence 36899999999999999999997652 223344555555556666666 46899999997653221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
....+..+|++++|+|++.+.+.... .++..+.. ...+.|+++|+||+|+...
T Consensus 80 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 80 -------------------------IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp -------------------------SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred -------------------------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 12456789999999998764322221 22222222 2247899999999998653
Q ss_pred hHH---hH-HHHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIM---QV-SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~---~~-~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... .. ......+++++++||++|.|++++++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 221 11 112345678999999999999999999877654
No 189
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=152.87 Aligned_cols=157 Identities=19% Similarity=0.179 Sum_probs=98.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+++|.+|||||||+|+|++.........++.+. ....+.+++. .+.+|||||...... .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~--~----------- 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLDK--S----------- 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC---------C-----------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccch--h-----------
Confidence 4689999999999999999999886554444444443 3344556664 678999999864210 0
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
......+..+|++++|+|.+.+.+.... .+...+... ..+.|+++|+||+|+.+
T Consensus 69 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 69 -----------------------WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -----------------------HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred -----------------------hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 0122456779999999998764332222 222333332 23789999999999975
Q ss_pred hhHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... .... ....+++++++||++|.|++++++.+.+.+..
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 126 CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3211 1111 22356789999999999999999999887754
No 190
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=2.6e-17 Score=148.76 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=106.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++... .....+..+.+.....+.+++ ..+.+|||||...+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT------------ 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH------------
Confidence 56899999999999999999997652 222233333444455555655 468999999986543322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
...+..+|++++|+|++.+.+.... .+...+.....+.|+++|+||+|+....
T Consensus 72 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 72 --------------------------KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS 125 (168)
T ss_dssp --------------------------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC
T ss_pred --------------------------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc
Confidence 2556789999999998764322221 2333333333578999999999987532
Q ss_pred H---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 320 ~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
. .....+ ...+++++++||++|.|+.++++.+.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 1 111222 235778999999999999999999887653
No 191
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.73 E-value=1.9e-17 Score=152.30 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..++|+++|.+|||||||+++|.+.......++.+ .....+.+++..+.+|||||...+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 74 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKIR---------------- 74 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGGH----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHHHH----------------
Confidence 46789999999999999999999876544444444 2334566778899999999986421
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHH-HHHH-ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIAD-WLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~-~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
.....++..+|++++|+|++.+.+.... .++. .+.. ...+.|+++|+||+|+...
T Consensus 75 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 75 ----------------------PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp ----------------------HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 1234567889999999998765332221 1222 2221 1247899999999998754
Q ss_pred hHH-hHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIM-QVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~-~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ....... .+++++++||++|.|++++++++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred CCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 221 1111111 2346899999999999999999987654
No 192
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=1.8e-17 Score=162.85 Aligned_cols=158 Identities=30% Similarity=0.385 Sum_probs=116.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|++|||||||+|+|+|.. ..++..+++|.+...+.+.+.+..+.+|||||+.++...... +
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~-------- 70 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID---E-------- 70 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH---H--------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH---H--------
Confidence 4689999999999999999999986 478899999999999999999999999999999875432110 0
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCCCCCcchHHHHHHHHHccCC-CeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMD-KFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~-~p~ivv~NK~D~~~~~ 319 (549)
.....++ ..+|++++|+|++.+ .....+...+... + .|+++|+||+|+....
T Consensus 71 ---------------------~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 71 ---------------------LIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEM--EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp ---------------------HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT--TCCSEEEEEECHHHHHHH
T ss_pred ---------------------HHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhc--CCCCEEEEEEChhcCccc
Confidence 0111222 579999999998763 2222333333333 5 9999999999976432
Q ss_pred HHh--HH-HHHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IMQ--VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~~--~~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... .. -....+++++++||++|.|+.++++.+...+..
T Consensus 126 ~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 126 GAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp TCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 111 11 122357899999999999999999999877653
No 193
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.73 E-value=2.1e-17 Score=149.70 Aligned_cols=156 Identities=18% Similarity=0.136 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||...+...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------- 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------------- 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------------
Confidence 3589999999999999999998765332 2233345555566666666 45789999998754321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~~ 317 (549)
.....+..+|++++|+|.+.+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 68 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 68 ------------------------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp --------------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred ------------------------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 011345679999999998764322221 2222233222 2789999999999874
Q ss_pred hhHH---hHH-HHHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGIM---QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~~---~~~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... ... .....+.+++++||++|.|+.++++.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 3221 111 12345778999999999999999999987765
No 194
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=152.24 Aligned_cols=156 Identities=19% Similarity=0.142 Sum_probs=104.5
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||...+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------------- 89 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------------- 89 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH--------------
Confidence 3568999999999999999999987532 22234444445555566666 468999999975421
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~ 317 (549)
......+..+|++|+|+|++.+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 90 ------------------------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 90 ------------------------SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ------------------------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 1234567889999999998875433332 223333332 23789999999999865
Q ss_pred hhH---HhHHHHHH--cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGI---MQVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~---~~~~~~~~--~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... .....+.. .+.+++++||++|.|+.++++.+.+.+.
T Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 321 12222333 2567899999999999999999987664
No 195
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=3.4e-17 Score=171.71 Aligned_cols=154 Identities=19% Similarity=0.216 Sum_probs=111.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeee----------cCC----------------------CCceeeeeEEEEeccC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV----------SPI----------------------SGTTRDAIDTEFTGPE 418 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~----------~~~----------------------~gtt~~~~~~~~~~~~ 418 (549)
..+|+++|++++|||||+++|++...... +.. .|+|++.....+. .+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~-~~ 102 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-TA 102 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-CS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-cC
Confidence 46899999999999999999986532111 111 2445554443443 35
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCC-cEEEEEeccc
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWD 497 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~-p~ivv~NK~D 497 (549)
+.++.+|||||+.+|. ..+..+++.+|++|+|||++++...+..+++..+...+. |+|+|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f~--------------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQYT--------------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGGH--------------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred CceEEEEECCChHHHH--------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCc
Confidence 6789999999997653 234457899999999999999988888888888877776 5899999999
Q ss_pred CCCCCchhhhHHHHHHHHHHHhcCC----CCCEEEEccccCCCHHHH
Q 008909 498 TIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKY 540 (549)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~l~~~~----~~~~i~iSA~~g~~v~~L 540 (549)
+..... ...+...+++.+.+...+ ..+++++||++|.|++++
T Consensus 169 l~~~~~-~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 169 LNGFDE-RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTSCH-HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CCcccH-HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 976321 222234455666666655 257999999999999873
No 196
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.73 E-value=2.6e-17 Score=153.05 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+|+|++... ...+.+++.......+.+++.. +.+|||||...+.....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 89 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP---------- 89 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH----------
Confidence 357899999999999999999997752 2333344434334455566644 59999999866543221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
.++..+|++++|+|++.+.+... ..+...+.....+.|+++|+||+|+..
T Consensus 90 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 90 ----------------------------LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred ----------------------------hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 45678999999999887543333 234445555556789999999999864
Q ss_pred hh-----HHhHHH-HHHcCCC-ceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KG-----IMQVSE-FWSLGFS-PLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~-----~~~~~~-~~~~~~~-~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ...... ....++. ++++||++|.|+.++++.+.+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 21 111111 2234666 9999999999999999999887754
No 197
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=5.4e-17 Score=168.83 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=107.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCC--eeecCCCCceeeeeEEEEec---------------c--C-----CCeEEEE
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTG---------------P--E-----GQKFRLI 425 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~--~~~~~~~gtt~~~~~~~~~~---------------~--~-----~~~i~l~ 425 (549)
...+|+++|+.++|||||+++|++... +.....+|+|++........ . + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 346899999999999999999997532 22333457777543222111 0 0 1579999
Q ss_pred eCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-CHhHHHHHHHHHHhC-CcEEEEEecccCCCCCc
Q 008909 426 DTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKN 503 (549)
Q Consensus 426 DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~l~~l~~~~-~p~ivv~NK~Dl~~~~~ 503 (549)
||||+.+|. ..+.+.+..+|++|+|+|++++. ..+..+.+..+...+ .|+++|+||+|+.....
T Consensus 87 DtPGh~~f~--------------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 87 DSPGHETLM--------------ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp ECSSHHHHH--------------HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred ECCCHHHHH--------------HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 999996642 23445567889999999999887 778888777776665 47999999999976543
Q ss_pred hhhhHHHHHHHHHHHhcC--CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 504 QQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~--~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.. ...+++.+.+... ...+++++||++|.|+++|+++|.+.
T Consensus 153 ~~---~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 153 AE---ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp TT---THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 21 1234455566542 35689999999999999999999864
No 198
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=5.2e-17 Score=169.15 Aligned_cols=160 Identities=21% Similarity=0.192 Sum_probs=115.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCC--eeecCCCCceeeeeEEEEecc-----------------C-----CCeEEEEe
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGP-----------------E-----GQKFRLID 426 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~--~~~~~~~gtt~~~~~~~~~~~-----------------~-----~~~i~l~D 426 (549)
..+|+++|+.++|||||+++|++... +.....+|+|++......... + ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 46899999999999999999997532 222334677775433222110 0 15799999
Q ss_pred CCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-CHhHHHHHHHHHHhC-CcEEEEEecccCCCCCch
Q 008909 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQ 504 (549)
Q Consensus 427 TpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~l~~l~~~~-~p~ivv~NK~Dl~~~~~~ 504 (549)
|||+.+| ...+.+.+..+|++|+|||++++. ..+..+.+..+...+ .|+++|+||+|+.....
T Consensus 90 tPGh~~f--------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~- 154 (410)
T 1kk1_A 90 APGHEAL--------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK- 154 (410)
T ss_dssp CSSHHHH--------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH-
T ss_pred CCChHHH--------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH-
Confidence 9999654 234556678999999999999887 778888777776665 47999999999976421
Q ss_pred hhhHHHHHHHHHHHhcC--CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 505 QTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 505 ~~~~~~~~~~~~~l~~~--~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.....+++.+++... ...+++++||++|.|+++|+++|.+.
T Consensus 155 --~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 155 --ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp --HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 112234556666542 45689999999999999999999864
No 199
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=3.2e-17 Score=152.37 Aligned_cols=155 Identities=18% Similarity=0.203 Sum_probs=102.8
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
.....+|+++|.+|||||||+|+|++....... .|.......+.+.+..+.+|||||...+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------- 88 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNICFTVWDVGGQDKIRP------------- 88 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEE----EETTEEEEEEEETTEEEEEEECC-----CT-------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccC----CcCceeEEEEEECCEEEEEEECCCCHhHHH-------------
Confidence 345679999999999999999999977643322 244455556677888999999999865432
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~ 316 (549)
.....+..+|++++|+|++.+.+.... .++..+.. ...+.|+++|+||+|+.
T Consensus 89 -------------------------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 89 -------------------------LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp -------------------------THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred -------------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 122456889999999999875332221 12222221 12478999999999986
Q ss_pred hhhH-HhHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 317 RKGI-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 317 ~~~~-~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... ........ .+++++++||++|.|++++++.+.+.+.
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 144 NAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 5421 11111111 2346899999999999999999987664
No 200
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.72 E-value=2.6e-17 Score=176.01 Aligned_cols=157 Identities=18% Similarity=0.126 Sum_probs=109.5
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.... ...+ |++.....+.. ++..+.+|||||+.++..+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~--T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~------------- 382 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTY-KNVKFNVWDVGGQDKIRPL------------- 382 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEES-SSCEEEEEEECCCGGGSGG-------------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccceeEEEEEe-CCEEEEEEECCCcHHHHHH-------------
Confidence 3468999999999999999999987633 2333 44444444443 6789999999999775432
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++|+|||++++.+.+... ++..+.. .++|+|||+||+|+....... ++...+........+.
T Consensus 383 -~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~ 458 (497)
T 3lvq_E 383 -WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH---EIQEKLGLTRIRDRNW 458 (497)
T ss_dssp -GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHH---HHHHHTTCTTCCSSCE
T ss_pred -HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHH---HHHHHhchhhhhcCCe
Confidence 123679999999999999865544443 4444433 379999999999997643221 1122111111122334
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.||++||++|.+.+
T Consensus 459 ~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 459 YVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999999998765
No 201
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.72 E-value=5e-17 Score=151.80 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=104.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC-------------------------------
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE------------------------------- 210 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 210 (549)
...+|+++|.+|+|||||+|+|++.... ....+.+..+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 3578999999999999999999987532 22222222333334444444
Q ss_pred --------ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeC
Q 008909 211 --------HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDG 282 (549)
Q Consensus 211 --------~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~ 282 (549)
..+.+|||||...+.. .....+..+|++|+|+|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~--------------------------------------~~~~~~~~~d~~i~v~D~ 126 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS--------------------------------------IVPLYYRGATCAIVVFDI 126 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT--------------------------------------THHHHHTTCSEEEEEEET
T ss_pred cccCccceeEEEEEECCCcHHHHH--------------------------------------HHHHHhcCCCEEEEEEEC
Confidence 6789999999765332 123567889999999998
Q ss_pred CCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhh--HHhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 283 QAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG--IMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 283 ~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~--~~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+.+.+.... .++..+... .+.|+++|+||+|..... ......+ ...+++++++||++|.|+.++++.+.+.+.+
T Consensus 127 ~~~~s~~~~~~~~~~i~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 127 SNSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHH-SCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh-CCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 875433322 223333332 258999999999942211 1122222 2357789999999999999999999877653
No 202
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.72 E-value=2.2e-17 Score=152.27 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=100.6
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEec----cCCCeEEEEeCCCccchhhhccCCChhhhh
Q 008909 372 PAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTG----PEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~----~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
.+|+++|.+|+|||||++++++.. .+.....++++.+.....+.. .....+.+|||||+.++..+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 72 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST---------- 72 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT----------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh----------
Confidence 479999999999999999999853 222223344445543333221 13558999999999765321
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccC-CHhH-HHHHHHHHHh--CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACI-TEQD-CRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~-~~~~-~~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~ 522 (549)
...+++++|++++|+|++++. +... ..|+..+... +.|+++|+||+|+....... .......+.+....
T Consensus 73 ----~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~ 145 (184)
T 2zej_A 73 ----HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRK---ACMSKITKELLNKR 145 (184)
T ss_dssp ----SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHH---HHHHHHHHHTTTCT
T ss_pred ----hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhH---HHHHHHHHHHHHhc
Confidence 112568899999999998853 2222 2455555543 78999999999996532211 11122333444333
Q ss_pred CCC----EEEEccccCC-CHHHHHHHHHhhh
Q 008909 523 WAP----IVYSTAIAGQ-SVDKYVLYLATSF 548 (549)
Q Consensus 523 ~~~----~i~iSA~~g~-~v~~L~~~l~~~~ 548 (549)
+.+ ++++||++|. |+++|++.|.+.+
T Consensus 146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 146 GFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp TSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 445 8999999997 9999999987653
No 203
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.72 E-value=1.6e-17 Score=157.23 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=103.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+|+|.+|||||||+++++...+ .....+.+..+.....+.+++. .+.||||+|.+++...
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l------------- 78 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL------------- 78 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCGGG-------------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH-------------
Confidence 46899999999999999999986642 2222233333444445556554 5789999998765432
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
...++..++++++|+|.+...+.... .++..+.. ...+.|+++|+||+|+...
T Consensus 79 -------------------------~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 79 -------------------------IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp -------------------------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred -------------------------HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 22567889999999998765433322 23333332 3357899999999998764
Q ss_pred hHHh---HHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~~~~---~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
+... ... ....+.+++++||++|.||++++..+.+.+...
T Consensus 134 r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred CcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 3221 111 234577899999999999999999998776543
No 204
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.72 E-value=3.4e-17 Score=148.28 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++... .....+..+.+.....+.+++ ..+.+|||||...+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~------------ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT------------ 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH------------
Confidence 46899999999999999999997753 223344445555555666665 468899999986644322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
...+..+|++++|+|++.+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 70 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 70 --------------------------TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123 (170)
T ss_dssp --------------------------HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred --------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC
Confidence 2556789999999998764332221 233333332 247899999999998532
Q ss_pred hH--HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~--~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...+++++++||++|.|+.+++..+.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 21 111112 2357789999999999999999999887754
No 205
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=1.9e-16 Score=161.82 Aligned_cols=166 Identities=25% Similarity=0.384 Sum_probs=119.2
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
...++|+++|++|||||||+|+|++.. ..+...+++|.......+...+..+.+|||||+......... .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~------ 234 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERN---E------ 234 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSC---H------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhh---H------
Confidence 457899999999999999999999886 567778899998888877778889999999998653221100 0
Q ss_pred ccccCCchhhHHHHHhhchHHHH-HHHHHHhhhccEEEEEEeCCCCC--Ccch-HHHHHHHHHccCCCeEEEEeccCCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIE-RQATAAIEESCVIIFLVDGQAGL--TAAD-EEIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~-~~~~~~i~~~d~illVvD~~~~~--~~~~-~~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
+. +........+|++++|+|++.+. .... ..++..+.....+.|+++|+||+|+.
T Consensus 235 ---------------------~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 235 ---------------------IEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp ---------------------HHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred ---------------------HHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 11 11222334589999999987643 2222 23444444433379999999999997
Q ss_pred hhhHHh-HHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 317 RKGIMQ-VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 317 ~~~~~~-~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...... ...+ ...+.+++++||++|.|++++++.+.+.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 294 DEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp CHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 653321 1222 2456789999999999999999999887754
No 206
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=1.2e-16 Score=162.94 Aligned_cols=168 Identities=21% Similarity=0.216 Sum_probs=107.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
.+.|+++|.+|+|||||+|++++.. +.+.+.+++|+|.....+.+ ++..+.+|||||+.+.. .......+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l------p~~lve~f~~ 250 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI------PPQIVDAFFV 250 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEE-TTEEEEEEECCCBCSSC------CGGGHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC------CHHHHHHHHH
Confidence 3459999999999999999999876 46678889999988777765 56789999999985421 0111122455
Q ss_pred HHHHHhcCCcEEEEEEccccC--CHhHHH-HHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 451 AFRAIRRSDVVALVIEAMACI--TEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~--~~~~~~-~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
++..+..+|++++|+|++++. ..+... +...+.. .++|+++|+||+|+......... .....+...+. ....
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~-~~~~~l~~~l~-~~~~ 328 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKL-DLVEKLSKELY-SPIF 328 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHH-HHHHHHHHHHC-SCEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHH-HHHHHHHHHhc-CCCC
Confidence 667789999999999998754 222222 2233333 46899999999999764311100 01111112221 1124
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++++||++|.|+++|+++|.+.+
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 207
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.72 E-value=3.8e-17 Score=175.71 Aligned_cols=160 Identities=21% Similarity=0.231 Sum_probs=110.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee--------------ecCCCCceeeeeEEEEecc--CC--CeEEEEeCCCcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI--------------VSPISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIR 431 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~--------------~~~~~gtt~~~~~~~~~~~--~~--~~i~l~DTpG~~ 431 (549)
...+++++|+.++|||||++++++..... .....|+|+......+.+. ++ ..++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 35689999999999999999998631110 0112355655433333322 23 478899999998
Q ss_pred chhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHH
Q 008909 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (549)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 511 (549)
+|.. .+.++++.+|++|+|||++++...++...|..+...++|+|+|+||+|+..... +...
T Consensus 85 dF~~--------------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~----~~v~ 146 (600)
T 2ywe_A 85 DFSY--------------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV----DRVK 146 (600)
T ss_dssp GGHH--------------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH----HHHH
T ss_pred hHHH--------------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH----HHHH
Confidence 7632 345578999999999999999999999988888889999999999999976432 1223
Q ss_pred HHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 512 QDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 512 ~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+++.+.+. ....+++++||++|.||++|+++|.+.+
T Consensus 147 ~el~~~lg-~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 147 KQIEEVLG-LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp HHHHHTSC-CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHhhC-CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 33333321 1112589999999999999999987653
No 208
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=5e-17 Score=152.63 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=109.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+++|.+|+|||||+|+|++... .....+..+.+.....+.+++. .+.+|||||...+.....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 75 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS----------- 75 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH-----------
Confidence 56899999999999999999997652 2233344455555556666664 689999999876543221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.++..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 76 ---------------------------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 76 ---------------------------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred ---------------------------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 456789999999998864332221 122333332 246899999999999753
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
.. .....+ ...+++++++||++|.|+++++..+.+.+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp CCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 21 111222 245778999999999999999999988776543
No 209
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=2.9e-17 Score=152.38 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+++|.+|||||||+++|.+...... ..|.......+.+++..+.+|||||+..+.....
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------- 85 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK------------- 85 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------------
Confidence 56899999999999999999997754322 2344445667788889999999999876443221
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~~~ 319 (549)
.++..+|++++|+|++.+.+.... .+...+.. ...+.|+++|+||+|+....
T Consensus 86 -------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (190)
T 1m2o_B 86 -------------------------DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140 (190)
T ss_dssp -------------------------GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred -------------------------HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC
Confidence 346789999999999875433221 12222221 12478999999999987521
Q ss_pred H-HhHHHHHH-------------cCCCceEeeccCCCChhhhHHHHHH
Q 008909 320 I-MQVSEFWS-------------LGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 320 ~-~~~~~~~~-------------~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
. ........ .+.+++++||++|.|++++++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 1 11222221 2336899999999999999998864
No 210
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.6e-17 Score=151.97 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=107.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+++|++... ...+.+++.......+.+++ ..+.+|||||..++.....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------- 84 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP----------- 84 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-----------
Confidence 46899999999999999999997642 23444444444445566666 5678999999876543221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
.++..+|++|+|+|++.+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 85 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 85 ---------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred ---------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 446789999999998765333222 244445544458899999999998753
Q ss_pred hH---------------HhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~---------------~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.. .....+ ...++ +++++||++|.|++++++.+.+.+
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 21 111112 22455 789999999999999999987655
No 211
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.72 E-value=1.8e-17 Score=149.95 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=101.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee-eecCCCccccceeeeeeeC--CceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+|+++|.+|+|||||+|+|++..... .....+.+ .....+.++ +..+.+|||||...+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~------------- 70 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA--FLTQTVCLDDTTVKFEIWDTAGQERYHS------------- 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGGGGG-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEeCCCcHHhhh-------------
Confidence 4689999999999999999999764221 11222222 222333444 35789999999765321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~ 317 (549)
.....+..+|++++|+|++.+.+.... .++..+.. ...+.|+++|+||+|+..
T Consensus 71 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 71 -------------------------LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp -------------------------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -------------------------hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 123567889999999998764322221 12222322 234789999999999865
Q ss_pred hhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... .....+ ...+++++++||++|.|+.++++.+.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 321 111222 235678899999999999999999877653
No 212
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.56 E-value=4.1e-19 Score=166.75 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=107.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc-CCCeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
+..+|+++|.+|+|||||++++++... ......++.+.....+... ....+.+|||||+.++..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------- 93 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR------------- 93 (204)
Confidence 356899999999999999999987542 2223334444433333221 234567999999976432
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh-------HHHHHHHHHH
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-------TYYEQDVREK 517 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-------~~~~~~~~~~ 517 (549)
....+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+......... ........+.
T Consensus 94 -~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 94 -LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 122357899999999999887655554 455666655 7999999999999754211000 0001222233
Q ss_pred HhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 518 LRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 518 l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
....+..+++++||++|.||++||++|.+.+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 3333333899999999999999999987653
No 213
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.72 E-value=1.6e-17 Score=156.85 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+++|++... ...+.+++.......+.+++ ..+.+|||||+..+.....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 75 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP---------- 75 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH----------
Confidence 357899999999999999999997642 23344444444444555665 4789999999976543221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
.++..+|++|+|+|.+.+.+.... .+...+.....+.|+++|+||+|+..
T Consensus 76 ----------------------------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 76 ----------------------------LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred ----------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 356789999999998764333322 23444444445789999999999865
Q ss_pred hhH-----------HhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 318 KGI-----------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 318 ~~~-----------~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
... .....+ ...+. +++++||++|.|++++++.+.+.+....
T Consensus 128 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 321 111122 23454 7899999999999999999988776443
No 214
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.2e-17 Score=153.33 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=104.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCce-eeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..+|+++|.+|+|||||+|+|++.... ...+..+.+.......+...+..+.+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------------- 88 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL-------------- 88 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh--------------
Confidence 578999999999999999999976522 23334444433332222223457899999997653221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChhh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~~ 319 (549)
....+..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+....
T Consensus 89 ------------------------~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 89 ------------------------APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp ------------------------THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred ------------------------hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 22556789999999998775332222 223333332 2378999999999986532
Q ss_pred H---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
. .....+ ...+++++++||++|.|++++++.+.+.+.+
T Consensus 145 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 1 122222 2356789999999999999999999876653
No 215
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=4.3e-17 Score=149.19 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=107.5
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..++|+++|.+|+|||||+|+|++.. ....+.+++.......+.+++. .+.+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------ 73 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM------------ 73 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH------------
Confidence 45789999999999999999999774 2344555555544455666664 6788999998654321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHH-HH-ccCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWL-RK-NYMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l-~~-~~~~~p~ivv~NK~D~~ 316 (549)
....+..+|++++|+|.+.+.+.... .+...+ .. ...+.|+++|+||+|+.
T Consensus 74 --------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 74 --------------------------REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp --------------------------HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred --------------------------HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 12456779999999998764322211 122222 22 12478999999999987
Q ss_pred hhhHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
..... .... ....+++++++||++|.|+.++++.+.+.+.+.
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 128 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 53211 1112 223567899999999999999999998877543
No 216
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=5.5e-17 Score=146.33 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=103.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++... .....+++.......+.+++ ..+.+|||||...+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------------- 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------------- 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH---------------
Confidence 46899999999999999999997652 23344444444444555666 368899999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~~ 317 (549)
.....++..+|++++|+|++.+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 67 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 67 -----------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred -----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 1233567789999999998764322221 2222333322 3789999999999865
Q ss_pred hhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... .....+ ...+++++++||++|.|+.++++.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 321 111222 235678999999999999999999987664
No 217
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=7.5e-17 Score=149.30 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccce-eeeeeeCC-----------ceEEEEEcccccccCCCCcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM-YGRSFWGE-----------HEFMLVDTGGVLNVSKSQPN 230 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~liDTpG~~~~~~~~~~ 230 (549)
..+|+++|.+|+|||||+|+|++.... ....+....+.. ...+.+.+ ..+.+|||||+..+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----- 84 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR----- 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH-----
Confidence 578999999999999999999976421 111222222222 22344443 378999999985421
Q ss_pred hhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHcc--CCCeEE
Q 008909 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFII 307 (549)
Q Consensus 231 ~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~~--~~~p~i 307 (549)
......+..+|++|+|+|++.+.+... ..++..+.... .+.|++
T Consensus 85 ---------------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 131 (195)
T 3bc1_A 85 ---------------------------------SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131 (195)
T ss_dssp ---------------------------------HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE
T ss_pred ---------------------------------HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 234466788999999999877543332 22333333322 478999
Q ss_pred EEeccCCCChhhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 308 LAVNKCESPRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 308 vv~NK~D~~~~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+|+||+|+..... .....+ ...+++++++||++|.|+.++++.+.+.+.+
T Consensus 132 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999875321 111222 2357789999999999999999999887654
No 218
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.71 E-value=1.4e-17 Score=158.36 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=112.4
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCC-CceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGG-NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
....+|+++|.+|||||||+|+|+.. ......+..+++.......+...+..+.+|||||...+.....
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 82 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD---------- 82 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCH----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHH----------
Confidence 34578999999999999999995533 2344566777776665554444456789999999876543221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
.++..+|++|+|+|++.+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 83 ----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 83 ----------------------------GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp ----------------------------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred ----------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 456789999999998875333322 233444444458899999999998653
Q ss_pred hHHh--HHHHHHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 GIMQ--VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~~~~--~~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.... .......+++++++||++|.|+.+++..+.+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp SSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2211 111223467899999999999999999998877543
No 219
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=2.9e-17 Score=151.09 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=106.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+++|++... ...+..++.......+.+++. .+.+|||||+..+.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP----------- 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-----------
Confidence 46899999999999999999997642 233344444444445556664 466999999976543221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
..+..+|++++|+|++.+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 72 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 72 ---------------------------LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred ---------------------------HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 346789999999998765433332 244445544458899999999998643
Q ss_pred hH---------------HhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---------------~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...+. +++++||++|.|++++++.+.+.+..
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred chhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 11 011111 22455 78999999999999999999887753
No 220
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=2.6e-17 Score=150.38 Aligned_cols=156 Identities=16% Similarity=0.090 Sum_probs=105.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC---ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+.+ ..+.+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------ 72 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM------------ 72 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch------------
Confidence 568999999999999999999976522 11122333445556666666 67899999998653321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc---cCCCe-EEEEeccCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKF-IILAVNKCE 314 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~---~~~~p-~ivv~NK~D 314 (549)
...++..+|++++|+|++.+.+.... .+...+... ..+.| +++|+||+|
T Consensus 73 --------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 73 --------------------------LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp --------------------------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred --------------------------hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 22557889999999998875433222 222333321 11445 799999999
Q ss_pred CChhhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 315 SPRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 315 ~~~~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+..... .....+ ...+++++++||++|.|+.++++.+.+.+.+
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 865321 111222 2356789999999999999999999887754
No 221
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=6.1e-17 Score=147.86 Aligned_cols=155 Identities=15% Similarity=0.065 Sum_probs=104.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+++|.+|+|||||+|+|++.... ....+..+.......+.+++ ..+.+|||||...+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 78 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR--------------- 78 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---------------
Confidence 578999999999999999999977532 11112222233333444554 468999999975422
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++++|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 79 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 79 -----------------------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp -----------------------HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred -----------------------hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 1234667889999999998875333222 222333332 247899999999999653
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. .....+ ...+++++++||++|.|+.++++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 21 112222 345778999999999999999999877653
No 222
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.71 E-value=8.9e-17 Score=148.75 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++..... ...+..+.......+.+.+ ..+.+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT------------ 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH------------
Confidence 5789999999999999999999775321 1122222223333344444 468999999986643322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
...+..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 89 --------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 89 --------------------------TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp --------------------------GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 1456789999999998764332221 233333332 247899999999998754
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ....+ ...+++++++||++|.|++++++.+.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 211 11222 2357789999999999999999999887653
No 223
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=3.2e-17 Score=148.31 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=101.6
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+|+|++.... ....+..+.......+.+++ ..+.+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------------- 67 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS--------------- 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh---------------
Confidence 57999999999999999999976522 12223333333334455555 4689999999764321
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChh-
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK- 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~- 318 (549)
.....+..+|++++|+|++.+.+.... .++..+.. ...+.|+++|+||+|+...
T Consensus 68 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 68 -----------------------LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp -----------------------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred -----------------------hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 223567889999999998864332222 12223332 2247899999999998653
Q ss_pred --h-H--HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 --G-I--MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 --~-~--~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
. . ..... ....+++++++||++|.|+.++++.+.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 1 11111 223567899999999999999999987654
No 224
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.71 E-value=4.7e-17 Score=164.43 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=112.4
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCChhhhh
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
....+|+++|.+|+|||||++++++... .....+|+.+.....+.. ++. .+.+|||||+.++....
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--------- 220 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLR--------- 220 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTG---------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHHH---------
Confidence 3456899999999999999999997642 334455666665555443 444 45599999997754211
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCHhHH--HHHHHHHHh--CCcEEEEEecccCCCCCchhhh-------HHHHHHHH
Q 008909 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-------TYYEQDVR 515 (549)
Q Consensus 447 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-------~~~~~~~~ 515 (549)
..+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+......... ........
T Consensus 221 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 221 -----PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp -----GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred -----HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 1257899999999999986555554 355666665 7999999999998653210000 00012233
Q ss_pred HHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 516 EKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 516 ~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
+.....+..+++++||++|.||++||+.|.+.+
T Consensus 296 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 296 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 344444444899999999999999999997653
No 225
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=156.64 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=108.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC--CceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS--GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~--gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||+|++++.... ....+ ++|++.....+. +++..+.||||||+.+...- ........
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~---~~~~~~~~ 102 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVP---NAETSKEI 102 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEE-ETTEEEEEEECCSCC--------CHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCC---HHHHHHHH
Confidence 3568999999999999999999997654 33333 677776665555 46789999999999764210 00111122
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHH-----hCCcEEEEEecccCCCCCchhh-hHHHHHHHHHHHhcC
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQT-ATYYEQDVREKLRAL 521 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~-----~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~l~~~ 521 (549)
......+++++|++|+|+|+++ ++..+..++..+.+ ...|++||+||+|+........ .....+.+.+.+..+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 2333344578899999999984 66667777666643 3569999999999976543221 111112345555555
Q ss_pred CCCCEEEEcccc-----CCCHHHHHHHHHhhh
Q 008909 522 DWAPIVYSTAIA-----GQSVDKYVLYLATSF 548 (549)
Q Consensus 522 ~~~~~i~iSA~~-----g~~v~~L~~~l~~~~ 548 (549)
+. .++++++.. +.|+.+|++.+.+++
T Consensus 182 ~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 182 GD-RYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp SS-SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CC-EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 44 678887664 369999999987764
No 226
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=6.6e-17 Score=148.14 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=104.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++..... ...+..+.......+.+.+ ..+.+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 77 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------------- 77 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh-------------
Confidence 4689999999999999999999765321 1223333333334445554 46899999997653221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
....+..+|++|+|+|++.+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 78 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 78 -------------------------APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp -------------------------THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred -------------------------hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 2255678999999999876433222 2233333332 247899999999998653
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...+++++++||++|.|+.++++.+.+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 133 RKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 21 112222 2457789999999999999999999877654
No 227
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=3.8e-17 Score=148.00 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++... .....+..+.......+.+++. .+.+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------ 72 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG------------ 72 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH------------
Confidence 46899999999999999999997652 2223334444444455566554 57889999976533221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
...+..+|++++|+|++.+.+.... .++..+... ..+.|+++|+||+|+.+.
T Consensus 73 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 73 --------------------------PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp --------------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred --------------------------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 1345789999999998764332221 122223221 137899999999998753
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. .....+ ...+.+++++||++|.|++++++.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 21 112222 235678999999999999999999987664
No 228
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.71 E-value=7.1e-17 Score=145.67 Aligned_cols=153 Identities=19% Similarity=0.150 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++... ...+..++.......+.+++ ..+.+|||||...+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------------- 66 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------------- 66 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------------
Confidence 35799999999999999999997642 22233333333333444544 4688999999865322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
.....+..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 67 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 67 ------------------------MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp ------------------------HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred ------------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 222556779999999998764322221 222333321 24789999999999975
Q ss_pred hhH---HhHHHHH-Hc-CCCceEeeccCCCChhhhHHHHHHHh
Q 008909 318 KGI---MQVSEFW-SL-GFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 318 ~~~---~~~~~~~-~~-~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... .....+. .. +.+++++||++|.|++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 422 1122222 23 66899999999999999999988765
No 229
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.1e-17 Score=179.41 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=105.8
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeec------------------------------CCCccccceeeeeeeCC
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD------------------------------EPGVTRDRMYGRSFWGE 210 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 210 (549)
....+|+++|++|+|||||+|+|++........ .+|+|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999999764322221 25788888888888888
Q ss_pred ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-----
Q 008909 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG----- 285 (549)
Q Consensus 211 ~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~----- 285 (549)
..+.+|||||+.++ .+.+..++..+|++|+|+|++.+
T Consensus 245 ~~~~iiDTPG~e~f--------------------------------------~~~~~~~~~~aD~~llVVDa~~g~~e~~ 286 (611)
T 3izq_1 245 ANFTIVDAPGHRDF--------------------------------------VPNAIMGISQADMAILCVDCSTNAFESG 286 (611)
T ss_dssp CEEEEEECCSSSCH--------------------------------------HHHHTTTSSCCSEEEEEEECSHHHHHTT
T ss_pred ceEEEEECCCCccc--------------------------------------HHHHHHHHhhcCceEEEEECCCCccccc
Confidence 99999999998652 12344667889999999999864
Q ss_pred --CCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH---H----hHHHHH-Hc-----CCCceEeeccCCCChhhh
Q 008909 286 --LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI---M----QVSEFW-SL-----GFSPLPISAISGTGTGEL 347 (549)
Q Consensus 286 --~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~---~----~~~~~~-~~-----~~~~v~vSA~~g~gi~~L 347 (549)
...+..++...+... ...++++|+||+|+.+... . ....+. .. +.+++++||++|.|+.++
T Consensus 287 ~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 287 FDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhhhHHHHHHHHHHHc-CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 334555555555443 2356999999999976211 1 111111 12 347899999999999865
No 230
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=1.9e-17 Score=152.29 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------------ 74 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH------------
Confidence 46899999999999999999997642 222233444445555566666 578999999986543321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
...+..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 75 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 75 --------------------------TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp --------------------------CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred --------------------------HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 1446789999999998874332221 122333332 247899999999998653
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...+++++++||++|.|+++++..+.+.+..
T Consensus 129 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 111222 2357789999999999999999999877654
No 231
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.71 E-value=5.3e-18 Score=183.61 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=100.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCee------------------------------ecCCCCceeeeeEEEEeccC
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPE 418 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 418 (549)
....+|+++|++|+|||||+|+|++..... ....+|+|++.....+.. +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 345689999999999999999997521111 112458888887766654 5
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-----C--CHhHHHHHHHHHHhCCc-EE
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-----I--TEQDCRIAERIEQEGKG-CL 490 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-----~--~~~~~~~l~~l~~~~~p-~i 490 (549)
+..+.||||||+.+|... +..+++.+|++|+|||++++ + ..+....+..+...++| +|
T Consensus 254 ~~~i~iiDTPGh~~f~~~--------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iI 319 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG--------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIV 319 (592)
T ss_dssp -----CCEEESSSEEEEE--------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEE
T ss_pred CeEEEEEECCChHHHHHH--------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEE
Confidence 678999999999887432 12357889999999999985 3 77888888888888887 99
Q ss_pred EEEecccCCCCCchhhhHHHHHHHHHHH-hcCCC----CCEEEEccccCCCHH--------------HHHHHHHhh
Q 008909 491 IVVNKWDTIPNKNQQTATYYEQDVREKL-RALDW----APIVYSTAIAGQSVD--------------KYVLYLATS 547 (549)
Q Consensus 491 vv~NK~Dl~~~~~~~~~~~~~~~~~~~l-~~~~~----~~~i~iSA~~g~~v~--------------~L~~~l~~~ 547 (549)
||+||+|+..... .....+..++.+.+ ...+. .+++++||++|.||. .|++.|..+
T Consensus 320 vviNKiDl~~~~~-~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 320 VSVNKLDLMSWSE-DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp EEEECGGGGTTCH-HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred EEEeccccccccH-HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 9999999975322 22334556677777 55444 379999999999998 788888654
No 232
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=151.57 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=103.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++... .....+..+.+.....+.+++ ..+.+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------------ 91 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKF-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT------------ 91 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH------------
Confidence 57899999999999999999997653 223334444445555566666 578999999986543321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
...+..+|++|+|+|++.+.+.... .++..+.. ...+.|+++|+||+|+...
T Consensus 92 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 92 --------------------------RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp --------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred --------------------------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 2557789999999998764332221 12222322 2247899999999998653
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...+++++++||++|.|+.+++..+.+.+..
T Consensus 146 ~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 112222 2456789999999999999999999877653
No 233
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.71 E-value=1.6e-17 Score=152.50 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|+|||||+++|++... ...+.+++.......+.+++. .+.+|||||...+.....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 74 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP---------- 74 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGG----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH----------
Confidence 467899999999999999999997642 223333333332233344443 456999999876443221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
..+..+|++++|+|++.+.+.... .+...+.....+.|+++|+||+|+.+
T Consensus 75 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 75 ----------------------------LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred ----------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 446789999999998764433332 24444554445789999999999865
Q ss_pred hhHH-------------hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHh
Q 008909 318 KGIM-------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 318 ~~~~-------------~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.... ....+ ...+. +++++||++|.|++++++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3221 11122 22454 789999999999999999987765
No 234
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=2.3e-17 Score=154.99 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
....+|+++|.+|||||||+++|++.. ....+.+++.......+.+++.. +.+|||||...+.....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------- 96 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP--------- 96 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG---------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH---------
Confidence 346799999999999999999999654 23445555555555556666655 45999999876543221
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
.++..+|++++|+|++.+.+.... .+...+.....+.|+++|+||+|+.
T Consensus 97 -----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 97 -----------------------------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp -----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred -----------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 356789999999998875444332 2444555544589999999999986
Q ss_pred hhhHH---------------hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHH
Q 008909 317 RKGIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 317 ~~~~~---------------~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
..... ....+ ...+. +++++||++|.|++++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 53210 11111 12343 58999999999999999988754
No 235
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.71 E-value=5.6e-17 Score=152.18 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||...+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------- 75 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV---------- 75 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH----------
Confidence 3578999999999999999999977532 22333444455555556655 4689999999876543321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-----CCCeEEEEeccC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKC 313 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ivv~NK~ 313 (549)
..+..+|++|+|+|++.+.+.... .+...+.... .+.|+++|+||+
T Consensus 76 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (207)
T 1vg8_A 76 ----------------------------AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127 (207)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred ----------------------------HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 346789999999998765332222 1222222211 368999999999
Q ss_pred CCChhhH--HhHHHHH--HcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 314 ESPRKGI--MQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 314 D~~~~~~--~~~~~~~--~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
|+..... .....+. ..+.+++++||++|.|+.++++.+.+.+...
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp TSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9874321 1122222 3466899999999999999999998877543
No 236
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=1.1e-16 Score=148.34 Aligned_cols=157 Identities=16% Similarity=0.098 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||...+....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 87 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT----------- 87 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH-----------
Confidence 35689999999999999999999765322 2223334444445556666 468999999987644322
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~ 317 (549)
...+..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 88 ---------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 88 ---------------------------RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ---------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 2556789999999998764332221 233333332 24789999999999965
Q ss_pred hhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... .....+ ...+++++++||++|.|++++++.+.+.+.+
T Consensus 141 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 141 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 321 111122 2356789999999999999999998877653
No 237
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=8e-17 Score=150.84 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=104.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||...+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 92 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR--------------- 92 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH---------------
Confidence 578999999999999999999976522 12223333444455566666 478999999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.....++..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 93 -----------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 93 -----------------------TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp -----------------------HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred -----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 1234667889999999998764332221 233333332 247899999999999753
Q ss_pred hH---HhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...++ +++++||++|.|+.+++..+.+.+..
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 112222 23567 78999999999999999999887754
No 238
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.71 E-value=9.1e-17 Score=148.19 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=107.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++.. ....+.+++.......+.+++.. +.+|||||...+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM------------- 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT-------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH-------------
Confidence 4689999999999999999999765 23445556655555666677755 677999997654331
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~ 317 (549)
...++..+|++++|+|+..+.+.... .+...+.. ...+.|+++|+||+|+..
T Consensus 69 -------------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 69 -------------------------RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp -------------------------HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred -------------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 22456779999999998764322221 12222322 124789999999999875
Q ss_pred hhHH--hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 318 KGIM--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 318 ~~~~--~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
.... .... ....+++++++||++|.|+.++++.+.+.+....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 3211 1111 2234678999999999999999999988776443
No 239
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=179.72 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=115.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecC------------------------------CCCceeeeeEEEEeccCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSP------------------------------ISGTTRDAIDTEFTGPEG 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~------------------------------~~gtt~~~~~~~~~~~~~ 419 (549)
...+|+++|++|+|||||+|+|++........ .+|+|++.....+.. .+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~ 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CC
Confidence 35689999999999999999999763322111 258888887777764 67
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-------CCHhHHHHHHHHHHhCCc-EEE
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGKG-CLI 491 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-------~~~~~~~~l~~l~~~~~p-~iv 491 (549)
.++.||||||+.++. ..+..+++.+|++|+|||++++ ...+..+.+..+...+.| +||
T Consensus 245 ~~~~iiDTPG~e~f~--------------~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 245 ANFTIVDAPGHRDFV--------------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp CEEEEEECCSSSCHH--------------HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEECCCCcccH--------------HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 899999999997752 3445568999999999999875 345677777777777755 999
Q ss_pred EEecccCCCCCchhhhHHHHHHHHHHHhcCC----CCCEEEEccccCCCHHHH
Q 008909 492 VVNKWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKY 540 (549)
Q Consensus 492 v~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~----~~~~i~iSA~~g~~v~~L 540 (549)
|+||+|+..... ...+.+...+...+...+ ..+++++||++|.||+++
T Consensus 311 VvNKiDl~~~~~-~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQ-QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCH-HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchhH-HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999999976322 223344555555555443 368999999999999865
No 240
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=151.75 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..++|+++|.+|+|||||+|+|++.. ....+.+++.......+.+++. .+.+|||||...+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 76 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------------- 76 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH--------------
Confidence 35789999999999999999999765 2344455555554555666664 68899999975421
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~ 316 (549)
.....++..+|++++|+|++.+.+.... .+...+.... .+.|+++|+||+|+.
T Consensus 77 ------------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 77 ------------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred ------------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 1233556789999999998764322221 2223333322 378999999999987
Q ss_pred hhhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 317 RKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 317 ~~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.... .....+ ...+++++++||++|.|+++++..+.+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5321 112222 2356789999999999999999999887654
No 241
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.71 E-value=4.8e-17 Score=150.56 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=103.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
...+|+++|.+|||||||+|+|++.... .....|.......+...+..+.+|||||...+..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------------- 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN---EDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS--------------- 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHT---------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC---CccCCCCceeEEEEEeCCEEEEEEECCCCHhHHH---------------
Confidence 3578999999999999999999976532 1112233344445667788999999999764322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHH-HHHHH-ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIA-DWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~-~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
....++..+|++|+|+|++.+.+.... .++ ..+.. ...+.|+++|+||+|+...
T Consensus 83 -----------------------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 83 -----------------------MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp -----------------------THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred -----------------------HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 223556889999999998764332221 122 22221 1257899999999998753
Q ss_pred hH-HhHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GI-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~-~~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. ........ .+++++++||++|.|++++++.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 140 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 21 11111111 2346799999999999999999987664
No 242
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=4.4e-17 Score=149.27 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=99.7
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC---CceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...+|+++|.+|+|||||+|+|++.... ....+..+.+.....+.++ ...+.+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------ 73 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS------------ 73 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh------------
Confidence 3578999999999999999999976522 2223333444555555555 24689999999755322
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-----CCCeEEEEecc
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNK 312 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ivv~NK 312 (549)
.....+..+|++|+|+|++.+.+.... .+...+.... .+.|+++|+||
T Consensus 74 --------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 74 --------------------------LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp -----------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred --------------------------hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 122456789999999998765332222 2222222211 47899999999
Q ss_pred CCCChhh----HHhHHHHHH--cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 313 CESPRKG----IMQVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 313 ~D~~~~~----~~~~~~~~~--~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+|+.... ......+.. .+.+++++||++|.|++++++.+.+.+.+
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9985431 112223332 45689999999999999999999876643
No 243
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=153.67 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=95.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++... ...+.+++.......+.+++. .+.+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------------- 98 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRL------------- 98 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHH-------------
Confidence 56899999999999999999997653 223333443333444556664 6889999998654321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
....+..+|++|+|+|++.+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 99 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 99 -------------------------RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -------------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred -------------------------HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 12456789999999998864333322 234444444457899999999998754
Q ss_pred hHH---------------hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~~---------------~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ....+ ...+. +++++||++|.|+.++++.+.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred chhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 211 11122 23455 78999999999999999999887654
No 244
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.71 E-value=6.7e-17 Score=148.53 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=104.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|+|||||+|+|++.. .......++.........+++.. +.+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------ 82 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM------------ 82 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH------------
Confidence 35789999999999999999999764 22333344434445555666654 556999998654332
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~ 316 (549)
...++..+|++++|+|++.+.+.... .+...+.. ...+.|+++|+||+|+.
T Consensus 83 --------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 83 --------------------------REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp --------------------------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred --------------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 12456789999999998864322221 22222322 22478999999999986
Q ss_pred hhhHH---hHHH-HHHcCCCceEeecc-CCCChhhhHHHHHHHhh
Q 008909 317 RKGIM---QVSE-FWSLGFSPLPISAI-SGTGTGELLDLVCSELK 356 (549)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~v~vSA~-~g~gi~~L~~~i~~~l~ 356 (549)
..... .... ....+.+++++||+ +|.|++++++.+.+.+.
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 137 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred hccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 52211 1111 22346789999999 99999999999987764
No 245
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=5.7e-17 Score=174.96 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=111.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-CceeeeeEEEEec-----------------cCCCeEEEEeCCCcc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDTEFTG-----------------PEGQKFRLIDTAGIR 431 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~-gtt~~~~~~~~~~-----------------~~~~~i~l~DTpG~~ 431 (549)
+.++|+++|++++|||||++++++.... ...+ |+|.+.-...+.. .....+++|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4568999999999999999999975321 2222 4443321111110 011259999999998
Q ss_pred chhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCc--------
Q 008909 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKN-------- 503 (549)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~-------- 503 (549)
+|..... ++++.+|++|+|||+++++..+....+..+...++|+++|+||+|+.....
T Consensus 82 ~F~~~~~--------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 82 AFTTLRK--------------RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp CCTTSBC--------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred HHHHHHH--------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 8754221 246889999999999999999999999999999999999999999975321
Q ss_pred -------hhhhHHHH---HHHHHHHhcC--------------CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 504 -------QQTATYYE---QDVREKLRAL--------------DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 504 -------~~~~~~~~---~~~~~~l~~~--------------~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
....+.+. ..+.+.+... ...+++++||++|.|+++|+++|...
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 01111111 1222333221 22479999999999999999998764
No 246
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=3.2e-17 Score=158.66 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=114.9
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCC-CccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
...+|+|+|.+|||||||+|+|++.........+ ++|..+....+.+++..+.+|||||+.+.....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~------------ 87 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK------------ 87 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc------------
Confidence 3578999999999999999999998755444333 588999888889999999999999997532211
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc----CCCeEEEEeccCCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----MDKFIILAVNKCESP 316 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~----~~~p~ivv~NK~D~~ 316 (549)
-+.+...+.+.+......+|++|+|+|++. ++..+..+++++.+.+ .+.|++++.||+|+.
T Consensus 88 --------------~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 88 --------------TDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp --------------HSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred --------------HHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 011122222333344588999999999874 6666666777766532 267999999999986
Q ss_pred hhhHHhH---------HHH-HHcCCCceEeeccC-----CCChhhhHHHHHHHhhhhc
Q 008909 317 RKGIMQV---------SEF-WSLGFSPLPISAIS-----GTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 317 ~~~~~~~---------~~~-~~~~~~~v~vSA~~-----g~gi~~L~~~i~~~l~~~~ 359 (549)
....... ... ...+..++.+++.. +.|+.+|+..+.+++.+..
T Consensus 153 ~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 153 GGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 5322211 111 12344555555443 6899999999998887643
No 247
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=7e-17 Score=145.47 Aligned_cols=153 Identities=20% Similarity=0.158 Sum_probs=102.5
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+|+|++.... .....++.......+.+++. .+.+|||||...+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------------- 65 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------------- 65 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----------------
Confidence 58999999999999999999976422 22333333333455566664 48899999975421
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 66 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 66 ----------------------SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp ----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred ----------------------HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 1233557789999999998764322211 122222221 247899999999998653
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ....+ ...+++++++||++|.|+.++++.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 211 11112 234778999999999999999999987664
No 248
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=8.6e-17 Score=147.96 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=106.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++... ...+.+++.......+.+++. .+.+|||||...+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 80 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------------- 80 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH---------------
Confidence 57899999999999999999997652 334445554444455566664 68999999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~~ 317 (549)
.....++..+|++++|+|+..+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 81 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 81 -----------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1233567789999999998764322221 1222233322 3789999999999865
Q ss_pred hhH---HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~---~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ..... ....+++++++||++|.|+.++++.+.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 321 11222 23456789999999999999999999887654
No 249
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.70 E-value=2.1e-18 Score=181.68 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=116.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
+.++|+++|++++|||||++++++.. +.....+|+|.+.....+. +++..+.+|||||+.+|....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~~~------------ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVE-TENGMITFLDTPGHAAFTSMR------------ 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTTSB------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHHHH------------
Confidence 45789999999999999999998753 3344556777776544444 356789999999998875421
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc-C-CCCCEE
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA-L-DWAPIV 527 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~i 527 (549)
.+.+..+|++++|||++++...+..+.+..+...+.|+|+|+||+|+...........+.+ . ..+.. . +..+++
T Consensus 69 --~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~-~-~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 69 --ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ-Y-GILPEEWGGESQFV 144 (501)
T ss_dssp --CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCC-C-CCCTTCCSSSCEEE
T ss_pred --HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHH-h-hhhHHHhCCCccEE
Confidence 1246889999999999998888899999888889999999999999975322111100000 0 00111 1 125899
Q ss_pred EEccccCCCHHHHHHHHHh
Q 008909 528 YSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~ 546 (549)
++||++|.|+++|+++|..
T Consensus 145 ~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 145 HVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp ECCTTTCTTCTTHHHHTTT
T ss_pred EEeeeeccCcchhhhhhhh
Confidence 9999999999999999864
No 250
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=150.48 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=103.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+|+|.+|||||||+|+|++...... ..+..........+.+.+ ..+.+|||||+..+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 89 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-------------- 89 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------------
Confidence 57899999999999999999998753221 112212222223333433 5689999999865432
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++|+|+|++.+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 90 ------------------------~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 90 ------------------------ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp ------------------------THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred ------------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 12256788999999999876433222 1223333322 247899999999998753
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...+++++++||++|.|+.+++..+.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 112222 2456789999999999999999998877653
No 251
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.70 E-value=2.2e-18 Score=183.01 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=119.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-CCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
+.|+|+++|++|+|||||+++|++... .....+++|.+.....+.+ .+..+.+|||||+..+.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------- 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------- 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------
Confidence 478999999999999999999997753 3346778898888777766 567899999999987655332
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~ 320 (549)
+++..+|++|+|+|++.+...+..+++..+... +.|+++|+||+|+.....
T Consensus 71 ---------------------------~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~--~vPiIVViNKiDl~~~~~ 121 (537)
T 3izy_P 71 ---------------------------RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA--HVPIVLAINKCDKAEADP 121 (537)
T ss_dssp ---------------------------SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT--TCCEEECCBSGGGTTTSC
T ss_pred ---------------------------HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEecccccccch
Confidence 446779999999999998888888887777665 789999999999864321
Q ss_pred ---HhHHHHHH-------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 ---MQVSEFWS-------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ---~~~~~~~~-------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
........ ..++++++||++|.|+.+|++.+.....
T Consensus 122 ~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 122 EKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 11111111 1236899999999999999999987765
No 252
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.70 E-value=1e-17 Score=176.55 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=111.1
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCC-Cee-----------------------------ecCCCCceeeeeEEEEeccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGED-RTI-----------------------------VSPISGTTRDAIDTEFTGPEGQ 420 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~-~~~-----------------------------~~~~~gtt~~~~~~~~~~~~~~ 420 (549)
..+|+++|++++|||||+|+|++.. .+. .....|+|++.....+.. ++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCc
Confidence 4689999999999999999998641 110 001257787776666653 567
Q ss_pred eEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCH-------hHHHHHHHHHHhCCc-EEEE
Q 008909 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE-------QDCRIAERIEQEGKG-CLIV 492 (549)
Q Consensus 421 ~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~-------~~~~~l~~l~~~~~p-~ivv 492 (549)
++.+|||||+.+|. ..+..+++.+|++|+|||++++..+ +..+.+..+...++| +|+|
T Consensus 86 ~~~iiDtPGh~~f~--------------~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivv 151 (458)
T 1f60_A 86 QVTVIDAPGHRDFI--------------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151 (458)
T ss_dssp EEEEEECCCCTTHH--------------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCcHHHH--------------HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEE
Confidence 89999999997652 3355678999999999999986544 667777777777876 8999
Q ss_pred EecccCCCCCchhhhHHHHHHHHHHHhcCCC----CCEEEEccccCCCHHH
Q 008909 493 VNKWDTIPNKNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVDK 539 (549)
Q Consensus 493 ~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~----~~~i~iSA~~g~~v~~ 539 (549)
+||+|+.... ....+.+.+++.+.+...++ .+++++||++|.|+.+
T Consensus 152 iNK~Dl~~~~-~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 152 VNKMDSVKWD-ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp EECGGGGTTC-HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred EEccccccCC-HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 9999997421 12223345556666665543 6899999999999874
No 253
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.70 E-value=1.1e-16 Score=179.68 Aligned_cols=162 Identities=19% Similarity=0.224 Sum_probs=117.3
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC------C---e------eecCCCCceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED------R---T------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~------~---~------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
....+|+++|++++|||||+++|++.. . + ......|+|++.....+. .++..+.+|||||+.+|
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChHHH
Confidence 345689999999999999999998631 0 0 111245777776555554 35689999999999765
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEEecccCCCCCchhhhHHHHH
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~ 512 (549)
...+..+++.+|++|+|||++++...+..+++..+...++| +|||+||+|+.... ...+.+.+
T Consensus 373 --------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~--e~le~i~e 436 (1289)
T 3avx_A 373 --------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE--ELLELVEM 436 (1289)
T ss_dssp --------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH--HHHHHHHH
T ss_pred --------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch--hhHHHHHH
Confidence 23455678999999999999999888999998888888999 78999999997532 22223345
Q ss_pred HHHHHHhcCC----CCCEEEEccccC--------CCHHHHHHHHHhh
Q 008909 513 DVREKLRALD----WAPIVYSTAIAG--------QSVDKYVLYLATS 547 (549)
Q Consensus 513 ~~~~~l~~~~----~~~~i~iSA~~g--------~~v~~L~~~l~~~ 547 (549)
++.+.+...+ ..+++++||++| .|+++|++.|.+.
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 5666666554 368999999999 4699999998764
No 254
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.70 E-value=1.3e-16 Score=167.26 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=107.0
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceee------------------------------ecCCCccccceeeeeeeCC
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWGE 210 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~ 210 (549)
....+|+++|++|+|||||+|+|++...... ...+|+|.+.....+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4567999999999999999999965422111 1225778888777788888
Q ss_pred ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC---
Q 008909 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--- 287 (549)
Q Consensus 211 ~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~--- 287 (549)
+.+.+|||||+.++ .+.+..++..+|++|+|+|++.+..
T Consensus 95 ~~~~iiDTPGh~~f--------------------------------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~ 136 (439)
T 3j2k_7 95 KHFTILDAPGHKSF--------------------------------------VPNMIGGASQADLAVLVISARKGEFETG 136 (439)
T ss_pred eEEEEEECCChHHH--------------------------------------HHHHHhhHhhCCEEEEEEECCCCccccc
Confidence 99999999998653 1244567788999999999988754
Q ss_pred ----cchHHHHHHHHHccCCCe-EEEEeccCCCChhh-----HH----hHHHHH-Hc------CCCceEeeccCCCChhh
Q 008909 288 ----AADEEIADWLRKNYMDKF-IILAVNKCESPRKG-----IM----QVSEFW-SL------GFSPLPISAISGTGTGE 346 (549)
Q Consensus 288 ----~~~~~~~~~l~~~~~~~p-~ivv~NK~D~~~~~-----~~----~~~~~~-~~------~~~~v~vSA~~g~gi~~ 346 (549)
.+..+++..+... +.| +++|+||+|+.... .. ....+. .. ..+++++||++|.|+.+
T Consensus 137 ~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 137 FEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred cCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccc
Confidence 4566666655544 666 89999999985311 11 111111 12 34689999999999998
Q ss_pred hHH
Q 008909 347 LLD 349 (549)
Q Consensus 347 L~~ 349 (549)
+.+
T Consensus 215 l~~ 217 (439)
T 3j2k_7 215 QSD 217 (439)
T ss_pred ccc
Confidence 654
No 255
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.70 E-value=7.1e-17 Score=148.72 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=107.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+++|.+|||||||+|+|++.... ....+..+.......+.+++ ..+.+|||||...+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR--------------- 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH---------------
Confidence 578999999999999999999976522 22334444445455566666 478999999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
.....++..+|++|+|+|++.+.+.... .+...+.. ...+.|+++|+||+|+...
T Consensus 74 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 74 -----------------------SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp -----------------------HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -----------------------HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 1234567889999999998864332222 12222332 2247899999999998643
Q ss_pred hHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... .... ....+++++++||++|.|+.++++.+.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 211 1122 23456789999999999999999998877654
No 256
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=150.05 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=106.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++... .....+..+.+.....+.+++. .+.+|||||...+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------------- 89 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR--------------- 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 57899999999999999999997652 2223334444455556666664 68999999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.....++..+|++|+|+|++.+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 90 -----------------------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 90 -----------------------SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp -----------------------HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -----------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 1233567889999999998764332221 233333332 246899999999998643
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...+++++++||++|.|+.+++..+.+.+..
T Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 111122 2356789999999999999999999877654
No 257
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.7e-17 Score=164.11 Aligned_cols=125 Identities=20% Similarity=0.218 Sum_probs=94.6
Q ss_pred CCCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhh
Q 008909 158 VPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 158 ~~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
....+..+|+|+|.||||||||+|+|++.. ..++++|++|.++..+.+.+.+.++.++||||+........
T Consensus 67 v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~-------- 137 (376)
T 4a9a_A 67 VARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGR-------- 137 (376)
T ss_dssp BCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------------
T ss_pred EeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhh--------
Confidence 345678899999999999999999999976 77899999999999999999999999999999975432211
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHH---ccCCCeEEEEeccCC
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NYMDKFIILAVNKCE 314 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~---~~~~~p~ivv~NK~D 314 (549)
.+.++++..++.||++++|+|+.+|..... .+...|.. ....+|.++++||+|
T Consensus 138 -----------------------~~g~~~l~~i~~ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~d 193 (376)
T 4a9a_A 138 -----------------------GRGKQVIAVARTCNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKKE 193 (376)
T ss_dssp -----------------------CHHHHHHHHHHHCSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEECS
T ss_pred -----------------------HHHHHHHHHHHhcCccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHhh
Confidence 123567788999999999999886532211 12222322 224677888899998
Q ss_pred C
Q 008909 315 S 315 (549)
Q Consensus 315 ~ 315 (549)
.
T Consensus 194 ~ 194 (376)
T 4a9a_A 194 K 194 (376)
T ss_dssp S
T ss_pred h
Confidence 4
No 258
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=1.3e-16 Score=147.64 Aligned_cols=156 Identities=20% Similarity=0.221 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++... .....+++.......+.+++. .+.+|||||...+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------------- 84 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------------- 84 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH--------------
Confidence 46899999999999999999997642 233444444444455566664 488999999765322
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~~~ 317 (549)
.....+..+|++++|+|+..+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 85 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 85 ------------------------MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred ------------------------HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 122556789999999998764332222 1222333221 3789999999999865
Q ss_pred hhH--HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 318 KGI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 318 ~~~--~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
... .....+ ...+++++++||++|.|+.++++.+.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 211 111222 23567899999999999999999998877643
No 259
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=1.3e-16 Score=145.62 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=103.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+++|.+|+|||||+|+|++... .....+..+.......+.+++ ..+.+|||||...+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 70 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR--------------- 70 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh---------------
Confidence 56899999999999999999997652 222233334444445556666 478999999975421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc-----CCCeEEEEeccCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKCE 314 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ivv~NK~D 314 (549)
......+..+|++++|+|+..+.+.... .+...+.... .+.|+++|+||+|
T Consensus 71 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 71 -----------------------SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp -----------------------HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred -----------------------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCc
Confidence 1223556789999999998764332222 2223332211 4789999999999
Q ss_pred CChhhH--HhHHHHH--HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 315 SPRKGI--MQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 315 ~~~~~~--~~~~~~~--~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+..... .....+. ..+.+++++||++|.|+.++++.+.+.+.
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 863221 1222222 34568999999999999999999987764
No 260
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=149.95 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||...+..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------------ 87 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG------------ 87 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh------------
Confidence 34579999999999999999999865322 234556666666666777775 467899999864211
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc--CCCeEEEEeccCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCES 315 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ivv~NK~D~ 315 (549)
.....++..+|++|+|+|.+.+.+.... .++..+.... .+.|+++|+||+|+
T Consensus 88 -------------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 88 -------------------------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp -------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred -------------------------hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 0112446789999999998764322221 2223333321 37899999999998
Q ss_pred ChhhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 316 PRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 316 ~~~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
..... .....+ ...+++++++||++|.|+++++..+.+.+..
T Consensus 143 ~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred cccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 75321 111222 2346789999999999999999999887754
No 261
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=7.6e-17 Score=149.23 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=103.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||...+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFP-DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------------- 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh-------------
Confidence 3578999999999999999999976532 22233344444455566666 4789999999754321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~ 316 (549)
.....++..+|++|+|+|++.+.+.... .+...+... ..+.|+++|+||+|+.
T Consensus 85 ------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 85 ------------------------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp ------------------------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred ------------------------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 0123557789999999998764332221 223333332 2478999999999996
Q ss_pred hhhH---HhHHHH-HHcCCCceEeeccCC---CChhhhHHHHHHHh
Q 008909 317 RKGI---MQVSEF-WSLGFSPLPISAISG---TGTGELLDLVCSEL 355 (549)
Q Consensus 317 ~~~~---~~~~~~-~~~~~~~v~vSA~~g---~gi~~L~~~i~~~l 355 (549)
.... .....+ ...+++++++||++| .|+.+++..+.+.+
T Consensus 141 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred ccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 5421 111222 235778999999999 99999988886654
No 262
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=151.70 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCce-eeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
....+|+++|.+|||||||+|+|++.... ...+..+. ......+.+++ ..+.+|||||...+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------ 91 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV--DFQMKTLIVDGERTVLQLWDTAGQERFR------------ 91 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCH------------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccc--eeEEEEEEECCEEEEEEEEECCCCcchh------------
Confidence 34689999999999999999999976532 12222232 23333445555 458999999975421
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCC
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCES 315 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~ 315 (549)
......+..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+
T Consensus 92 --------------------------~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 92 --------------------------SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145 (199)
T ss_dssp --------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGG
T ss_pred --------------------------hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 1334567889999999998765433322 223333332 236899999999998
Q ss_pred Chhh-------H--HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 316 PRKG-------I--MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 316 ~~~~-------~--~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... . ..... ....+++++++||++|.|+.+++..+.+.+.
T Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6321 0 11111 1234678999999999999999999987664
No 263
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.69 E-value=4.9e-17 Score=151.10 Aligned_cols=157 Identities=18% Similarity=0.093 Sum_probs=101.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeec-------CCCccccceeee--e-eeC--CceEEEEEcccccccCCCCcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-------EPGVTRDRMYGR--S-FWG--EHEFMLVDTGGVLNVSKSQPN 230 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~-------~~~~t~~~~~~~--~-~~~--~~~~~liDTpG~~~~~~~~~~ 230 (549)
..+|+++|.+|||||||++.+.+........ ....|....... + .++ ...+.+|||||...+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---- 89 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA---- 89 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH----
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH----
Confidence 5789999999999999999887653211100 011122221111 1 222 34689999999865322
Q ss_pred hhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHH----HHHHH---ccCC
Q 008909 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA----DWLRK---NYMD 303 (549)
Q Consensus 231 ~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~----~~l~~---~~~~ 303 (549)
....++..+|++|+|+|++.+....+...+ .++.. ...+
T Consensus 90 ----------------------------------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~ 135 (198)
T 3t1o_A 90 ----------------------------------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135 (198)
T ss_dssp ----------------------------------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTS
T ss_pred ----------------------------------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCC
Confidence 233567889999999998854333333333 33332 2257
Q ss_pred CeEEEEeccCCCChhhHHh-HHHHH-HcCC-CceEeeccCCCChhhhHHHHHHHhhh
Q 008909 304 KFIILAVNKCESPRKGIMQ-VSEFW-SLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~-~~~~~-~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.|+++|+||+|+....... ...+. ..++ +++++||++|.|+.++++.+.+.+.+
T Consensus 136 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 136 VPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp SCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 8999999999987542222 22222 3466 88999999999999999999887654
No 264
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.69 E-value=7.1e-17 Score=152.83 Aligned_cols=156 Identities=15% Similarity=0.043 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+++|++... ...+..++.......+.+++ ..+.+|||||...+.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------- 93 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP---------- 93 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH----------
Confidence 467999999999999999999997652 22223333222233344444 4688999999876543221
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
.++..+|++|+|+|++.+.+... ..+...+.....+.|+++|+||+|+..
T Consensus 94 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 94 ----------------------------LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred ----------------------------HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 44678999999999987544333 234455555556899999999999865
Q ss_pred hh---------------HHhHHH-HHHcCC-CceEeeccCCCC-hhhhHHHHHHHhhh
Q 008909 318 KG---------------IMQVSE-FWSLGF-SPLPISAISGTG-TGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~---------------~~~~~~-~~~~~~-~~v~vSA~~g~g-i~~L~~~i~~~l~~ 357 (549)
.. ...... ....++ +++++||++|.| +.++++.+.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred chhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 20 111111 223466 789999999998 99999999887653
No 265
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=9.6e-17 Score=150.22 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+++|++.... ....+.++... ...+.+++. .+.+|||||...+.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 91 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRP----------- 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTTGG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHHHH-----------
Confidence 468999999999999999999976532 11222222222 234556653 688999999866443221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
..+..+|++|+|+|+..+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 92 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 92 ---------------------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred ---------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 346789999999998764333222 344445544458899999999998753
Q ss_pred hHH---------------hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~~---------------~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
... ....+ ...+. +++++||++|.|++++++.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 210 11111 22355 689999999999999999987765
No 266
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.69 E-value=7.4e-17 Score=151.04 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++..... ...+..+.......+.+.+ ..+.+|||||+..+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 71 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR--------------- 71 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc---------------
Confidence 4689999999999999999999875321 1122222222233344444 478999999985421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.....++..+|++|+|+|++.+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 72 -----------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 72 -----------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp -----------------------HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred -----------------------chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 1233567889999999998764322211 222333332 247899999999998653
Q ss_pred hHH---hHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~~---~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ....+ ...+++++++||++|.|+.++++.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 211 11112 2346789999999999999999998877653
No 267
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.69 E-value=5.1e-18 Score=178.68 Aligned_cols=151 Identities=20% Similarity=0.262 Sum_probs=115.8
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
+.++|+++|++|+|||||+++|++.. ......+++|.+.....+.+++..+.+|||||+..+.....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~------------ 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA------------ 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH------------
Confidence 57899999999999999999998754 33344577888877777777888999999999987654322
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~ 321 (549)
+.+..+|++|+|+|+.++...+..+.+..+... +.|+++++||+|+......
T Consensus 70 --------------------------~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~--~vPiIVviNKiDl~~~~~~ 121 (501)
T 1zo1_I 70 --------------------------RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA--QVPVVVAVNKIDKPEADPD 121 (501)
T ss_dssp --------------------------SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT--TCCEEEEEECSSSSTTCCC
T ss_pred --------------------------HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc--CceEEEEEEeccccccCHH
Confidence 446779999999999998888888877776654 8899999999998643111
Q ss_pred hHHH------HH--Hc--CCCceEeeccCCCChhhhHHHHHH
Q 008909 322 QVSE------FW--SL--GFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 322 ~~~~------~~--~~--~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
.... .. .. .++++++||++|.|+.+|++.+..
T Consensus 122 ~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 122 RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 1000 00 01 247899999999999999998864
No 268
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=2e-16 Score=169.60 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=95.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCe---------------------eecCCCCceeeeeEEEEeccCCCeEEEEeC
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT---------------------IVSPISGTTRDAIDTEFTGPEGQKFRLIDT 427 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~---------------------~~~~~~gtt~~~~~~~~~~~~~~~i~l~DT 427 (549)
.+.++|+++|+.++|||||..+|+..... ...-.-|+|+......+. |++.+|+|+||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDT 107 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDT 107 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeC
Confidence 34579999999999999999999732111 011123777776666665 57899999999
Q ss_pred CCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCch
Q 008909 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ 504 (549)
Q Consensus 428 pG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~ 504 (549)
||+.+|.. .+.+.++.+|++|+|||+..++..+...+|+++.+.++|.|+++||+|+......
T Consensus 108 PGHvDF~~--------------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~ 170 (548)
T 3vqt_A 108 PGHQDFSE--------------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPL 170 (548)
T ss_dssp CCGGGCSH--------------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHH
T ss_pred CCcHHHHH--------------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchh
Confidence 99999842 4667899999999999999999999999999999999999999999999776543
No 269
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=1.5e-16 Score=156.54 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=95.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeec-------CCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-------EPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIME 233 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~ 233 (549)
..+|+++|++|+|||||+|+|++........ .++++.......+..+|. .+.+|||||+.++......+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~-- 85 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW-- 85 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT--
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH--
Confidence 4689999999999999999999876443332 233334444444444553 78999999997653322111
Q ss_pred hhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhh-------------ccEEEEEEeCC-CCCCcchHHHHHHHHH
Q 008909 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SCVIIFLVDGQ-AGLTAADEEIADWLRK 299 (549)
Q Consensus 234 ~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~-------------~d~illVvD~~-~~~~~~~~~~~~~l~~ 299 (549)
..+.+++..++..++.. +|+++++++.. +++...+..+.+.+..
T Consensus 86 ----------------------~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 86 ----------------------QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 143 (274)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 11222333333344433 67888888654 4677777777776654
Q ss_pred ccCCCeEEEEeccCCCChhhHHhH-----H-HHHHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 300 NYMDKFIILAVNKCESPRKGIMQV-----S-EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 300 ~~~~~p~ivv~NK~D~~~~~~~~~-----~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+.|+++|+||+|+........ . .....+++++++||.++.|+.++++.+.+.+
T Consensus 144 ---~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 144 ---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp ---TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred ---cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 789999999999875432211 1 1224577899999999999999988887654
No 270
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=1.2e-16 Score=151.43 Aligned_cols=159 Identities=15% Similarity=0.110 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce-eeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...+|+++|.+|||||||+|+|++.... ......+.+...... ....+ ..+.+|||||...+.....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~--------- 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF-LDDQGNVIKFNVWDTAGQEKKAVLKD--------- 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE-EBTTSCEEEEEEEEECSGGGTSCCCH---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE-EeCCCcEEEEEEEecCCchhhchHHH---------
Confidence 3568999999999999999999976532 222233322222111 11122 5689999999876543221
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESP 316 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~ 316 (549)
..+..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+.
T Consensus 80 -----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 80 -----------------------------VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp -----------------------------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred -----------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 456779999999999875433332 222333322 2358999999999987
Q ss_pred hhhHHhH---HHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 317 RKGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 317 ~~~~~~~---~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
....... ..+ ...+++++++||++|.|+.+++..+.+.+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp ----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 6422111 111 124668999999999999999999998876543
No 271
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-16 Score=152.33 Aligned_cols=157 Identities=14% Similarity=0.089 Sum_probs=103.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
.++|+|+|.+|||||||+|+|++..... ...+..+.......+.+++ ..+.+|||||...+.....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 80 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS----------- 80 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH-----------
Confidence 4689999999999999999999775322 2233444444455566666 5789999999876543221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
.++..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 81 ---------------------------~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 81 ---------------------------AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp ---------------------------GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred ---------------------------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 446789999999998765433221 123333332 237899999999998653
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.. .....+ ...+++++++||++|.|++++++.+.+.+...
T Consensus 134 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 21 111222 23567899999999999999999998877643
No 272
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.69 E-value=4.8e-18 Score=183.94 Aligned_cols=157 Identities=24% Similarity=0.255 Sum_probs=88.5
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCCCceee------------------------------ecCCCccccceeeeeeeC
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWG 209 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~ 209 (549)
....++|+++|++|+|||||+|+|++...... ...+|+|.+.....+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34567899999999999999999964321111 114578888888777888
Q ss_pred CceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC---
Q 008909 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--- 286 (549)
Q Consensus 210 ~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~--- 286 (549)
+..+.+|||||+.++.... ..++..+|++|||+|++.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~--------------------------------------~~~~~~aD~alLVVDa~~g~~e~ 295 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGM--------------------------------------IAGASSADFAVLVVDSSQNNFER 295 (592)
T ss_dssp -----CCEEESSSEEEEEC--------------------------------------CC-------CCSEEEEEECCSST
T ss_pred CeEEEEEECCChHHHHHHH--------------------------------------HHHHhhCCEEEEEEECCCCcccc
Confidence 8899999999998653321 13457799999999998753
Q ss_pred ----CcchHHHHHHHHHccCCCe-EEEEeccCCCCh--hhHH-----hHHHHH--HcCC-----CceEeeccCCCChh--
Q 008909 287 ----TAADEEIADWLRKNYMDKF-IILAVNKCESPR--KGIM-----QVSEFW--SLGF-----SPLPISAISGTGTG-- 345 (549)
Q Consensus 287 ----~~~~~~~~~~l~~~~~~~p-~ivv~NK~D~~~--~~~~-----~~~~~~--~~~~-----~~v~vSA~~g~gi~-- 345 (549)
..+..+++..+... +.| +|+|+||+|+.. .... ....+. ..++ +++++||++|.|+.
T Consensus 296 gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~ 373 (592)
T 3mca_A 296 GFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373 (592)
T ss_dssp TSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSC
T ss_pred ccccchHHHHHHHHHHHc--CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccc
Confidence 66777777666654 665 899999999875 2111 112222 1344 58999999999998
Q ss_pred ------------hhHHHHHHHhh
Q 008909 346 ------------ELLDLVCSELK 356 (549)
Q Consensus 346 ------------~L~~~i~~~l~ 356 (549)
.|++.+....+
T Consensus 374 ~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 374 DSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccccchHHHHHHHHhhcc
Confidence 67777765443
No 273
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.69 E-value=5.5e-17 Score=170.10 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=106.5
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCC-Cee-----------------------------ecCCCCceeeeeEEEEeccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGED-RTI-----------------------------VSPISGTTRDAIDTEFTGPEGQ 420 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~-~~~-----------------------------~~~~~gtt~~~~~~~~~~~~~~ 420 (549)
..+|+++|++++|||||+++|++.. .+. .....|+|++.....+. ..+.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~~ 84 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKKY 84 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSSC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCCe
Confidence 4689999999999999999998631 110 01145788877665555 3577
Q ss_pred eEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc-------CCHhHHHHHHHHHHhCC-cEEEE
Q 008909 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGK-GCLIV 492 (549)
Q Consensus 421 ~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~-------~~~~~~~~l~~l~~~~~-p~ivv 492 (549)
.+.+|||||+.+|. ..+..+++.+|++|+|||++++ +..+..+.+..+...+. |+|+|
T Consensus 85 ~~~iiDtpG~~~f~--------------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivv 150 (435)
T 1jny_A 85 FFTIIDAPGHRDFV--------------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVA 150 (435)
T ss_dssp EEEECCCSSSTTHH--------------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEE
T ss_pred EEEEEECCCcHHHH--------------HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEE
Confidence 89999999997753 2355578999999999999986 55567777777777776 58999
Q ss_pred EecccCCCCC-chhhhHHHHHHHHHHHhcCCC----CCEEEEccccCCCHHH
Q 008909 493 VNKWDTIPNK-NQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVDK 539 (549)
Q Consensus 493 ~NK~Dl~~~~-~~~~~~~~~~~~~~~l~~~~~----~~~i~iSA~~g~~v~~ 539 (549)
+||+|+.... .....+...+++.+.+...++ .+++++||++|.|+.+
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 9999997632 112223445667777776553 6799999999999974
No 274
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=7.5e-16 Score=142.22 Aligned_cols=165 Identities=25% Similarity=0.324 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~ 243 (549)
++|+++|.+|||||||+|+|++.. ......+++|....... +. .+.+|||||+........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~-------------- 62 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPK-------------- 62 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCH--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEe--cC--CEEEEECCCccccccCCH--------------
Confidence 689999999999999999999876 45566777776665433 22 789999999754322111
Q ss_pred cCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-----------CCcchHHHHHHHHHccCCCeEEEEecc
Q 008909 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-----------LTAADEEIADWLRKNYMDKFIILAVNK 312 (549)
Q Consensus 244 ~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~-----------~~~~~~~~~~~l~~~~~~~p~ivv~NK 312 (549)
.. .+.+...........+..++++++|+|.... ....+..+...+.. .+.|+++|+||
T Consensus 63 -----~~----~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK 131 (190)
T 2cxx_A 63 -----EV----QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNK 131 (190)
T ss_dssp -----HH----HHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred -----HH----HHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeeh
Confidence 00 0011111111111225667888899986531 11111223333333 37899999999
Q ss_pred CCCChhhHHhHHHH-HHcCC-------CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 313 CESPRKGIMQVSEF-WSLGF-------SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 313 ~D~~~~~~~~~~~~-~~~~~-------~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
+|+..........+ ...+. +++++||++|.|+.++++.+.+.+...
T Consensus 132 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 132 LDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 99876431111111 12333 359999999999999999998877643
No 275
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=152.75 Aligned_cols=158 Identities=20% Similarity=0.123 Sum_probs=103.7
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC--CceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
..++|+++|.+|||||||+|+|++.... ..+..++.......+.++ +..+.+|||||...+.....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------- 90 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPY---------- 90 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCG----------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHH----------
Confidence 4678999999999999999999987532 223333332223333433 35679999999876544322
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~ 316 (549)
.++..+|++++|+|++.+.+.... .+...+... ..+.|+++|+||+|+.
T Consensus 91 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 91 ----------------------------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ----------------------------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred ----------------------------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 446789999999998764322221 122222221 2367999999999987
Q ss_pred hhhHHh---HH-HHHHcCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 317 RKGIMQ---VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 317 ~~~~~~---~~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
...... .. .....+.+++++||++|.|+++++..+.+.+....
T Consensus 143 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 143 PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred cccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 543211 11 12245678999999999999999999988876543
No 276
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=4.3e-17 Score=151.23 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=104.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce-eeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
...+|+|+|.+|||||||+|+|++.... ......+.+.......+...+..+.+|||||...+.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 86 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR--------------- 86 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH---------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH---------------
Confidence 3679999999999999999999976421 112222333332222222344678999999965421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
......+..+|++|+|+|++.+.+... ..+...+... ..+.|+++|+||+|+...
T Consensus 87 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 87 -----------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp -----------------------HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred -----------------------HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 233466788999999999876432221 1233334332 247899999999998654
Q ss_pred hHH---hHH-HHHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GIM---QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~~---~~~-~~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
... ... .....+++++++||++|.|+.++++.+.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 221 111 123357789999999999999999999887654
No 277
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=150.68 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++.... ..+.+++.......+.+++ ..+.+|||||...+.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP----------- 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGG-----------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHH-----------
Confidence 458999999999999999999987532 2222233233333455666 4688999999876443221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch--HHHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
..+..+|++|+|+|++.+.+... ..+...+.....+.|+++|+||+|+...
T Consensus 92 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 92 ---------------------------LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp ---------------------------GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred ---------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 34678999999999876432222 2344455554458899999999998754
Q ss_pred hHH---------------hHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~---------------~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ....+ ...+. +++++||++|.|++++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 211 01111 12344 6899999999999999999987764
No 278
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.69 E-value=2.5e-16 Score=146.74 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=100.4
Q ss_pred CCCCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeee---eCCceEEEEEcccccccCCCCcchhhhh
Q 008909 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF---WGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (549)
Q Consensus 159 ~~~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~i 235 (549)
......+|+++|.+|||||||++++.+..... ...+.+......... .....+.+|||||...+.....
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------ 87 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF------ 87 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC------
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh------
Confidence 33457899999999999999999998753221 222222221111222 2336799999999876433210
Q ss_pred hhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHH---ccCCCeEEEEecc
Q 008909 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NYMDKFIILAVNK 312 (549)
Q Consensus 236 ~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~---~~~~~p~ivv~NK 312 (549)
....++..+|++|+|+|++.+.......+..++.. ...+.|+++|+||
T Consensus 88 -----------------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK 138 (196)
T 3llu_A 88 -----------------------------DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138 (196)
T ss_dssp -----------------------------CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred -----------------------------hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 00255678999999999987632333344445443 3458899999999
Q ss_pred CCCChhhH-------Hh---HHHHH-----HcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 313 CESPRKGI-------MQ---VSEFW-----SLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 313 ~D~~~~~~-------~~---~~~~~-----~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
+|+..... .. ...+. ..+.+++++||++ .|+.+++..+.+.+
T Consensus 139 ~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 139 VDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 99865321 10 11122 2345789999999 99999999887643
No 279
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.68 E-value=1.4e-16 Score=168.80 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=112.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCc------eeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNR------AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~ 236 (549)
.++|+++|++|+|||||+++|++... ......+|+|.+.....+.+++..+.+|||||+.++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~------------ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL------------ 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH------------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH------------
Confidence 46899999999999999999998651 233455678888877777888899999999998542
Q ss_pred hhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCC
Q 008909 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 237 ~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
.+.....+..+|++|+|+|++.+...+..+.+..+... +.|+++|+||+|+.
T Consensus 87 --------------------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 87 --------------------------IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPIIVVITKSDNA 138 (482)
T ss_dssp --------------------------HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCBCEEEECTTSS
T ss_pred --------------------------HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc--CCCEEEEEECCCcc
Confidence 13445778899999999999988888887777766654 78889999999997
Q ss_pred hhhHHh-----HHHHH-Hc----CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 317 RKGIMQ-----VSEFW-SL----GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 317 ~~~~~~-----~~~~~-~~----~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+..... ...+. .. +.+++++||++|.|+.+|++.+...+.
T Consensus 139 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 643211 11222 22 457899999999999999999988765
No 280
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.68 E-value=1.8e-16 Score=159.20 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=107.5
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCee-----ecCCC---Cceee--------------------------------
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI-----VSPIS---GTTRD-------------------------------- 408 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~~~~~---gtt~~-------------------------------- 408 (549)
...++|+++|.+|+|||||+|+++|..... +...| .++++
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 346789999999999999999999976522 22233 22221
Q ss_pred ------------------eeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEc-cc
Q 008909 409 ------------------AIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA-MA 469 (549)
Q Consensus 409 ------------------~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~-~~ 469 (549)
.....+...++.++.+|||||+.+..... ............+..+++.+|++++|+|+ +.
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGD-QPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC----------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCC-CchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 01111122345689999999996521100 00112334456677788999999999997 44
Q ss_pred cCCHhH-HHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc--CCCCCEEEEcccc---CCCHHHHHHH
Q 008909 470 CITEQD-CRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--LDWAPIVYSTAIA---GQSVDKYVLY 543 (549)
Q Consensus 470 ~~~~~~-~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~iSA~~---g~~v~~L~~~ 543 (549)
++...+ ..++..+...+.|+++|+||+|+...... . .+.+...+.. ..+.+++++||++ +.|+.++++.
T Consensus 181 ~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD-A----MEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC-C----HHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH-H----HHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 555344 46777787789999999999999865431 1 1222211112 2233444456666 7899999998
Q ss_pred HHhhh
Q 008909 544 LATSF 548 (549)
Q Consensus 544 l~~~~ 548 (549)
+.+.+
T Consensus 256 ~~~~~ 260 (315)
T 1jwy_B 256 EILYF 260 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.68 E-value=3.8e-16 Score=140.30 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=102.3
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
.+|+++|.+|+|||||+|+|++... .....+++.......+.+++. .+.+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------------- 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------------- 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH---------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH---------------
Confidence 4799999999999999999997642 223333333333444555554 478899999764221
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHcc--CCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivv~NK~D~~~~ 318 (549)
.....+..+|++++|+|+..+.+... ..+...+.... .+.|+++|+||+|+.+.
T Consensus 67 -----------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 67 -----------------------MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp -----------------------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred -----------------------HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 22345678999999999876432221 12223333322 27899999999998753
Q ss_pred hH--HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~--~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. .....+ ...+++++++||++|.|+.++++.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 21 111222 235778999999999999999999987664
No 282
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.68 E-value=3e-16 Score=148.57 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=103.7
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC------------CceEEEEEcccccccCCCCc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQP 229 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~ 229 (549)
...+|+|+|.+|||||||+|+|++.... ....+..+.+.....+.+. ...+.+|||||...+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----- 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----- 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence 3578999999999999999999976531 1111222222223334443 346899999997532
Q ss_pred chhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc-----CCC
Q 008909 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-----MDK 304 (549)
Q Consensus 230 ~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~-----~~~ 304 (549)
.......+..+|++|+|+|++.+.+.. .+..++.... .+.
T Consensus 98 ---------------------------------~~~~~~~~~~~d~iilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~~ 142 (217)
T 2f7s_A 98 ---------------------------------RSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENP 142 (217)
T ss_dssp ---------------------------------HHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCC
T ss_pred ---------------------------------HhHHHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCC
Confidence 123446678899999999987643222 2233443321 478
Q ss_pred eEEEEeccCCCChhhH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 305 FIILAVNKCESPRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 305 p~ivv~NK~D~~~~~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
|+++|+||+|+..... .....+ ...+++++++||++|.|+.++++.+.+.+.+
T Consensus 143 piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999875321 111222 2357789999999999999999999887654
No 283
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.68 E-value=3.3e-16 Score=143.23 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=100.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+++|++..... +..++.......+.+++. .+.+|||||... .
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~----------- 67 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A----------- 67 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h-----------
Confidence 4689999999999999999999875432 222222333445556663 578899999753 0
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHHc----cCCCeEEEEeccCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN----YMDKFIILAVNKCES 315 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~~----~~~~p~ivv~NK~D~ 315 (549)
.++..+|++|+|+|.+.+.+..... +..++... ..+.|+++|+||+|+
T Consensus 68 ---------------------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 68 ---------------------------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp ---------------------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred ---------------------------HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3457799999999988654333222 22233322 147899999999998
Q ss_pred Ch--h---hHHhHHHHHH--cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 316 PR--K---GIMQVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 316 ~~--~---~~~~~~~~~~--~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. . .......+.. .+++++++||++|.|++++++.+.+.+..
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred cccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 42 1 1111222222 25689999999999999999999877654
No 284
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=6.4e-17 Score=146.60 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=99.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||+|+|++.... .....+........+..++ ..+.+|||||..++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------------- 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------------- 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---------------
Confidence 468999999999999999999976422 1111111122222333444 468999999976421
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHc---cCCCeEEEEeccCCCC
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESP 316 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ivv~NK~D~~ 316 (549)
......+..+|++++|+|++.+.+... ..+...+.+. ..+.|+++|+||+|+.
T Consensus 66 -----------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 66 -----------------------AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred -----------------------HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 123355678999999999876432221 2233333332 1378999999999986
Q ss_pred hhhHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
..... .... ....+++++++||++|.|+.++++.+.+.+.
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 53221 1111 2234678899999999999999999987664
No 285
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.67 E-value=4e-17 Score=158.91 Aligned_cols=143 Identities=23% Similarity=0.286 Sum_probs=101.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH-hHHHHH-HcCCCceEeeccCC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAISG 341 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~-~~~~~~v~vSA~~g 341 (549)
+++...+.++|++++|+|++.|.......+. ++ ++|.++|+||+|+.+.... ....++ ..++++ .+||+++
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCC
Confidence 4667889999999999999998776543332 22 7899999999999875432 223333 457787 9999999
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCe
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~ 421 (549)
.|+.+|+..+...+ .+++++|.+|+||||++|++++.....+.+.+|+|+...... -+..
T Consensus 86 ~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~----~~~~ 145 (262)
T 3cnl_A 86 PRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS----LENG 145 (262)
T ss_dssp CHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE----CTTS
T ss_pred cCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE----eCCC
Confidence 99988777653221 479999999999999999999987777888999998764322 2357
Q ss_pred EEEEeCCCccch
Q 008909 422 FRLIDTAGIRKR 433 (549)
Q Consensus 422 i~l~DTpG~~~~ 433 (549)
+.+|||||+...
T Consensus 146 ~~l~DtpG~~~~ 157 (262)
T 3cnl_A 146 VKILDTPGILYK 157 (262)
T ss_dssp CEEESSCEECCC
T ss_pred EEEEECCCcccC
Confidence 899999999764
No 286
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=1.2e-17 Score=156.12 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+|+|++... .....++.+.+.....+.+++ ..+.+|||||...+.....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 100 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS---------- 100 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHH----------
Confidence 357899999999999999999997652 223334555556666667777 4689999999876544322
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCCh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~ 317 (549)
.++..+|++|+|+|++.+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 101 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 101 ----------------------------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp ----------------------------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred ----------------------------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 346789999999998874332221 122223322 23689999999999875
Q ss_pred hhHH---hHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.... .... ....+++++++||++|.|+.++++.+.+.+.
T Consensus 153 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4211 1111 2235678999999999999999999876654
No 287
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.67 E-value=5.4e-16 Score=156.43 Aligned_cols=153 Identities=21% Similarity=0.262 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
...+|+|+|.+|||||||+++|++...... .+ |.......+...+..+.+|||||...+...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 225 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-------------- 225 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----CCS--------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCHhHHHH--------------
Confidence 456899999999999999999998764322 22 556666677778889999999997654332
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
...++..+|++|+|+|++.+.+.... .+...+.. ...+.|+++|+||+|+...
T Consensus 226 ------------------------~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 226 ------------------------WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp ------------------------HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ------------------------HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 22567789999999999765443322 22233322 1247899999999998764
Q ss_pred hHH-hHHHHHHc------CCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GIM-QVSEFWSL------GFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~~-~~~~~~~~------~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
... ........ +++++++||++|.|++++++.+.+.+.
T Consensus 282 ~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 282 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred cCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 321 22222222 335899999999999999999988765
No 288
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=1e-16 Score=150.35 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcc-ccceeeeeeeCC----ceEEEEEcccccccCCCCcchhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
..+|+++|.+|||||||+|+|++........+.+++ .+.....+.+++ ..+.+|||||+..+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------ 87 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK------------ 87 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH------------
Confidence 468999999999999999999987322333333333 245555666765 468999999985421
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHcc----CCCeEEEEecc
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY----MDKFIILAVNK 312 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~----~~~p~ivv~NK 312 (549)
......+..+|++|+|+|++.+.+.... .++..+.... .+.|+++|+||
T Consensus 88 --------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 88 --------------------------EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp --------------------------HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred --------------------------HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 1233456789999999998765432221 2333333322 37899999999
Q ss_pred CCCCh-hhH---HhHHHH-HHcCCCceEeeccC-CCChhhhHHHHHHHhhh
Q 008909 313 CESPR-KGI---MQVSEF-WSLGFSPLPISAIS-GTGTGELLDLVCSELKK 357 (549)
Q Consensus 313 ~D~~~-~~~---~~~~~~-~~~~~~~v~vSA~~-g~gi~~L~~~i~~~l~~ 357 (549)
+|+.. ... .....+ ...+++++++||++ |.|+.++++.+.+.+.+
T Consensus 142 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp C-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 99976 221 112222 24567899999999 99999999999887654
No 289
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.67 E-value=4.1e-16 Score=147.28 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC---CceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
..++|+++|.+|||||||+++|++... ...++.++.. ...+.++ +..+.+|||||+..+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLRF------------ 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHHH------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCccee--eEEEEecCCCccEEEEEECCCChhHHH------------
Confidence 467999999999999999999997652 3334433333 2335555 56799999999864211
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHH----H---ccCCCeEEEEec
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR----K---NYMDKFIILAVN 311 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~----~---~~~~~p~ivv~N 311 (549)
.....++..+|++|+|+|++. ..........++. . ...+.|+++|+|
T Consensus 70 -------------------------~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 70 -------------------------QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp -------------------------HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred -------------------------HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 022345788999999999875 1111122222222 1 123689999999
Q ss_pred cCCCChhhHHh-H----HHHHH----------------------------------c--CCCceEeeccCC------CCh
Q 008909 312 KCESPRKGIMQ-V----SEFWS----------------------------------L--GFSPLPISAISG------TGT 344 (549)
Q Consensus 312 K~D~~~~~~~~-~----~~~~~----------------------------------~--~~~~v~vSA~~g------~gi 344 (549)
|+|+....... . ..... . +.+++++||++| .|+
T Consensus 124 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv 203 (214)
T 2fh5_B 124 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADI 203 (214)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBC
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccCh
Confidence 99987532111 0 00000 0 345789999999 999
Q ss_pred hhhHHHHHHH
Q 008909 345 GELLDLVCSE 354 (549)
Q Consensus 345 ~~L~~~i~~~ 354 (549)
+++++++.+.
T Consensus 204 ~~lf~~l~~~ 213 (214)
T 2fh5_B 204 QDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 290
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=6.4e-17 Score=172.49 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=90.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCce---------------------eeecCCCccccceeeeeeeCCceEEEEEcccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---------------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~---------------------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~ 221 (549)
.++|+|+|++|+|||||+|+|++.... .....+|+|.......+.+.+..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 568999999999999999999621100 01112566777777778888999999999999
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~ 301 (549)
.++.. .+.+++..+|++|+|+|+..+...+...++..+...
T Consensus 93 ~df~~--------------------------------------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~- 133 (528)
T 3tr5_A 93 ADFTE--------------------------------------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR- 133 (528)
T ss_dssp TTCCH--------------------------------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-
T ss_pred hhHHH--------------------------------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-
Confidence 76432 345778899999999999998888888777777665
Q ss_pred CCCeEEEEeccCCCCh
Q 008909 302 MDKFIILAVNKCESPR 317 (549)
Q Consensus 302 ~~~p~ivv~NK~D~~~ 317 (549)
+.|+++|+||+|+..
T Consensus 134 -~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 134 -HTPIMTFINKMDRDT 148 (528)
T ss_dssp -TCCEEEEEECTTSCC
T ss_pred -CCCEEEEEeCCCCcc
Confidence 889999999999864
No 291
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=146.18 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+|+|++... ...+..++.......+.+++ ..+.+|||||...+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------ 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC------------ 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH------------
Confidence 356899999999999999999997652 23334444333333445555 45788999998653321
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc----cCCCeEEEEeccCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCE 314 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ivv~NK~D 314 (549)
..++..+|++++|+|.+.+.+.... .++..+... ..+.|+++|+||+|
T Consensus 86 ---------------------------~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 138 (187)
T 3c5c_A 86 ---------------------------ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138 (187)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGG
T ss_pred ---------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcc
Confidence 1456789999999998764332221 122333322 14789999999999
Q ss_pred CChhhH---HhHHH-HHHcCCCceEeec-cCCCChhhhHHHHHHHhh
Q 008909 315 SPRKGI---MQVSE-FWSLGFSPLPISA-ISGTGTGELLDLVCSELK 356 (549)
Q Consensus 315 ~~~~~~---~~~~~-~~~~~~~~v~vSA-~~g~gi~~L~~~i~~~l~ 356 (549)
+..... ..... ....+++++++|| ++|.|+.++++.+.+.+.
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 139 MAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred hhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 865321 11112 2235778999999 899999999999887664
No 292
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.66 E-value=9.2e-16 Score=165.54 Aligned_cols=155 Identities=23% Similarity=0.297 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeee------------------eCCceEEEEEcccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF------------------WGEHEFMLVDTGGVLN 223 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~liDTpG~~~ 223 (549)
+.++|+|+|++|+|||||+++|++..... ....++|.+....... +....+.+|||||+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~-~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS-REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC-C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc-ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46899999999999999999999764211 1112444443222221 1223599999999987
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+..... +++..+|++|+|+|+++++..+..+.+..+... +
T Consensus 83 F~~~~~--------------------------------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~--~ 122 (594)
T 1g7s_A 83 FTTLRK--------------------------------------RGGALADLAILIVDINEGFKPQTQEALNILRMY--R 122 (594)
T ss_dssp CTTSBC--------------------------------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT--T
T ss_pred HHHHHH--------------------------------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc--C
Confidence 654332 345779999999999999888888888777765 8
Q ss_pred CeEEEEeccCCCChhh------------------HH--------hHH-HHHHcC---------------CCceEeeccCC
Q 008909 304 KFIILAVNKCESPRKG------------------IM--------QVS-EFWSLG---------------FSPLPISAISG 341 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~------------------~~--------~~~-~~~~~~---------------~~~v~vSA~~g 341 (549)
.|+++++||+|+.... .. ... .+...+ .+++++||++|
T Consensus 123 vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred CeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 8999999999986310 00 000 111112 26899999999
Q ss_pred CChhhhHHHHHHHhhh
Q 008909 342 TGTGELLDLVCSELKK 357 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~ 357 (549)
.|+.+|++++...++.
T Consensus 203 ~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 203 EGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHhhccc
Confidence 9999999999887753
No 293
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.66 E-value=6.2e-16 Score=142.67 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=102.0
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
....+|+++|.+|||||||+|+|++.... ..... |.......+.+++. .+.+|||||...+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------- 80 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV--QEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPEL-------------- 80 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCH--------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCC-CcceEEEEEEECCEEEEEEEEECCCChhh--------------
Confidence 34579999999999999999999976532 11222 33333456667774 4677999998541
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch-HHHHHHHHHc--cCCCeEEEEeccCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCES 315 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivv~NK~D~ 315 (549)
.++..+|++++|+|++.+.+... ..+...+... ..+.|+++|+||+|+
T Consensus 81 -----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 81 -----------------------------QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp -----------------------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred -----------------------------heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 14567999999999887543333 2233334332 136799999999998
Q ss_pred Ch--hh---HHhHHHHH-HcC-CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 316 PR--KG---IMQVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 316 ~~--~~---~~~~~~~~-~~~-~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .. ......+. ..+ .+++++||++|.|++++++.+.+.+..
T Consensus 132 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 132 SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp BTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 42 11 11112222 233 678999999999999999999877654
No 294
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=151.24 Aligned_cols=169 Identities=18% Similarity=0.267 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCC--CccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP--GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...++|+|+|.+|||||||+|+|++... .....+ ++|..+....+.+++..+.||||||+.+.........
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~------ 99 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS------ 99 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH------
Confidence 4467999999999999999999999864 333344 7888888888899999999999999976433222111
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc---CCCeEEEEeccCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY---MDKFIILAVNKCES 315 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~---~~~p~ivv~NK~D~ 315 (549)
..+.+.+......+|++|+|+|++. +...+..++..+.+.+ ...|+++|+||+|+
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 100 ---------------------KEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp ---------------------HHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred ---------------------HHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 1223344455567899999999874 4555555555554311 24689999999998
Q ss_pred ChhhHHh---------HHHH-HHcCCCceEeeccC-----CCChhhhHHHHHHHhhhh
Q 008909 316 PRKGIMQ---------VSEF-WSLGFSPLPISAIS-----GTGTGELLDLVCSELKKV 358 (549)
Q Consensus 316 ~~~~~~~---------~~~~-~~~~~~~v~vSA~~-----g~gi~~L~~~i~~~l~~~ 358 (549)
....... ...+ ...+..++.+++.. +.++.+|+..+...+.+.
T Consensus 158 ~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 158 LGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp C------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 6532111 1111 22344566666553 367888888887777543
No 295
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.66 E-value=1.2e-16 Score=168.78 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=99.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCee------------------------------ecCCCCceeeeeEEEEeccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPEGQ 420 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~~~ 420 (549)
..+|+++|+.++|||||+++|++..... .....|+|++.....+.. ++.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~ 121 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR 121 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCe
Confidence 4689999999999999999997521110 011346777765555553 577
Q ss_pred eEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-------CHhHHHHHHHHHHhCCc-EEEE
Q 008909 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-------TEQDCRIAERIEQEGKG-CLIV 492 (549)
Q Consensus 421 ~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-------~~~~~~~l~~l~~~~~p-~ivv 492 (549)
++.||||||+.+|. ..+...++.+|++|+|||++++. ..+..+.+..+...++| +|||
T Consensus 122 ~~~iiDtPGh~~f~--------------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivv 187 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV--------------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVV 187 (467)
T ss_dssp EEEECCCCC-------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEE
T ss_pred EEEEEECCCcHHHH--------------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 89999999997753 23455689999999999999864 24667777777778888 9999
Q ss_pred EecccCCCCC-chhhhHHHHHHHHHHHhcC-C-----CCCEEEEccccCCCHHHHH
Q 008909 493 VNKWDTIPNK-NQQTATYYEQDVREKLRAL-D-----WAPIVYSTAIAGQSVDKYV 541 (549)
Q Consensus 493 ~NK~Dl~~~~-~~~~~~~~~~~~~~~l~~~-~-----~~~~i~iSA~~g~~v~~L~ 541 (549)
+||+|+.... .....+....++.+.+... + ..+++++||++|.|+++++
T Consensus 188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999996422 1222233445556666544 2 3579999999999998754
No 296
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=4.3e-16 Score=154.38 Aligned_cols=160 Identities=12% Similarity=0.097 Sum_probs=102.5
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (549)
+|+++|.+|+||||+++++.+..........+.|.......+ ....+++||||||+++|.. ... ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~-----~~l------~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFE-----PSY------DSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCC-----CSH------HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccc-----hhh------hhh
Confidence 478999999999999998876422111111122222211222 2346899999999988631 000 123
Q ss_pred HHHhcCCcEEEEEEccccCCHhHHHHHH----HHHH--hCCcEEEEEecccCCCCCchh-hhHHHHHHHHHHHhcC----
Q 008909 453 RAIRRSDVVALVIEAMACITEQDCRIAE----RIEQ--EGKGCLIVVNKWDTIPNKNQQ-TATYYEQDVREKLRAL---- 521 (549)
Q Consensus 453 ~~~~~ad~~llVvD~~~~~~~~~~~~l~----~l~~--~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~l~~~---- 521 (549)
.++++++++|+|+|++++ ..+...+|. .+.. .+.|+++|+||+|+....... ....+..+..+.++..
T Consensus 68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~ 146 (331)
T 3r7w_B 68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG 146 (331)
T ss_dssp HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence 468999999999999987 444444442 2322 368999999999997643211 1112333444455553
Q ss_pred CCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 522 DWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 522 ~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+.+++++||++ .||.+.|..+++.
T Consensus 147 ~~i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 147 VQVSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp CCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred cCceEEEeccCC-CcHHHHHHHHHHH
Confidence 356899999998 5899999988764
No 297
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.66 E-value=3.3e-16 Score=168.71 Aligned_cols=183 Identities=17% Similarity=0.200 Sum_probs=111.9
Q ss_pred CCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEE------E
Q 008909 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTE------F 414 (549)
Q Consensus 341 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~------~ 414 (549)
..|+..+..++.......... .........+|+++|.+|+|||||+|++++... .....+.+..+..... +
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g--~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~t~g~~~~~~~~~~~~~v 89 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKG--EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQTHGLNVVTKQAPNIKGL 89 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTT--CCCBCCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGG
T ss_pred HhCHHHHHHHHHHHHHhhccC--cccccccceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEeccccccce
Confidence 356666666554433211000 001223456899999999999999999998652 2222232222222211 1
Q ss_pred ec---cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhC--CcE
Q 008909 415 TG---PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG--KGC 489 (549)
Q Consensus 415 ~~---~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~--~p~ 489 (549)
.. ..+..+.+|||||+..+... ....++.+|++|+|+|+++. +....|+..+.... .|+
T Consensus 90 ~~~~~~~~~~~~i~Dt~G~e~~~~~--------------~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pv 153 (535)
T 3dpu_A 90 ENDDELKECLFHFWDFGGQEIMHAS--------------HQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPV 153 (535)
T ss_dssp TTCSTTTTCEEEEECCCSCCTTTTT--------------CHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCE
T ss_pred eecCCCceEEEEEEECCcHHHHHHH--------------HHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCE
Confidence 11 12568999999998765431 11246889999999999874 45566888888765 999
Q ss_pred EEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 490 LIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 490 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
|+|+||+|+....... .+.+.+.+...+ .+++++||++|.||++|++.|.+.+
T Consensus 154 ilV~NK~Dl~~~~~v~-----~~~~~~~~~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 154 IVVMNKIDENPSYNIE-----QKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp EEEECCTTTCTTCCCC-----HHHHHHHCGGGT-TCEEECCC-----CTTHHHHHHHHH
T ss_pred EEEEECCCcccccccC-----HHHHHHHHHhcC-CceEEEecCcccCHHHHHHHHHHHH
Confidence 9999999997654432 233445555443 5899999999999999999998754
No 298
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=4.7e-16 Score=144.79 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+|+|++.... ..+..++.......+.+++ ..+.+|||||... .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~----------- 89 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----T----------- 89 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----C-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----c-----------
Confidence 4678999999999999999999976532 2222322222333445555 4589999999865 1
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESP 316 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~ 316 (549)
......+..+|++++|+|++.+.+.... .+...+... ..+.|+++|+||+|+.
T Consensus 90 ------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 90 ------------------------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred ------------------------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 1233567789999999998764332221 223333321 2478999999999987
Q ss_pred hhhH---HhHHHH-HHcCCCceEeeccCCC-ChhhhHHHHHHHhhh
Q 008909 317 RKGI---MQVSEF-WSLGFSPLPISAISGT-GTGELLDLVCSELKK 357 (549)
Q Consensus 317 ~~~~---~~~~~~-~~~~~~~v~vSA~~g~-gi~~L~~~i~~~l~~ 357 (549)
.... .....+ ...+++++++||++|. |+.++++.+.+.+.+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 5321 111122 2346789999999999 999999999887754
No 299
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=155.16 Aligned_cols=167 Identities=18% Similarity=0.128 Sum_probs=100.7
Q ss_pred cccceEEEeCCC---------CCChhHHHHHHhcC--CCeeecCCCCc-eeeeeEEEEe---------------ccCCCe
Q 008909 369 NRIPAIAIVGRP---------NVGKSSILNALVGE--DRTIVSPISGT-TRDAIDTEFT---------------GPEGQK 421 (549)
Q Consensus 369 ~~~~~v~~~G~~---------~~GKssl~n~ll~~--~~~~~~~~~gt-t~~~~~~~~~---------------~~~~~~ 421 (549)
....+|+++|.+ |+|||||+|++++. ..+.....+++ +.+.....+. ......
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 345799999999 99999999999984 22333334433 2332211110 012346
Q ss_pred EEEEe------CCCccchhhhccCCChhhhhHHHHH---------HHHH---------------------hcCCcEEEEE
Q 008909 422 FRLID------TAGIRKRAAIASSGSTTEALSVNRA---------FRAI---------------------RRSDVVALVI 465 (549)
Q Consensus 422 i~l~D------TpG~~~~~~~~~~~~~~e~~~~~~~---------~~~~---------------------~~ad~~llVv 465 (549)
+.||| |||...+..... ..+ ...+ ..++ ++||++|+|+
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~-----~~~-~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTAL-----QPY-IKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGC-----CCH-HHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred EEEEEcccccccccccccccccc-----ccc-cccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 78888 666544332110 000 0000 0011 2799999999
Q ss_pred Ecccc--CCHhHH-HHHHHHHH----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHH
Q 008909 466 EAMAC--ITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVD 538 (549)
Q Consensus 466 D~~~~--~~~~~~-~~l~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~ 538 (549)
|++++ .+.+.. .|+..+.. .++|++||+||+|+..... .+...+......+.+++++||++|.||+
T Consensus 171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-------v~~~~~~~~~~~~~~~~e~SAk~g~gv~ 243 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-------IRDAHTFALSKKNLQVVETSARSNVNVD 243 (255)
T ss_dssp ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-------HHHHHHHHHTSSSCCEEECBTTTTBSHH
T ss_pred ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-------HHHHHHHHHhcCCCeEEEEECCCCCCHH
Confidence 99986 555554 35555543 4799999999999854321 1233344443345689999999999999
Q ss_pred HHHHHHHhhh
Q 008909 539 KYVLYLATSF 548 (549)
Q Consensus 539 ~L~~~l~~~~ 548 (549)
++|++|.+.+
T Consensus 244 elf~~l~~~l 253 (255)
T 3c5h_A 244 LAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 300
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.66 E-value=1.5e-15 Score=167.51 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=116.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCc--------------eeeeeE------------------------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGT--------------TRDAID------------------------ 411 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gt--------------t~~~~~------------------------ 411 (549)
...+|+++|.+|+|||||+|+|+|.....++..|+| |++...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 356899999999999999999999887777777777 332200
Q ss_pred ---------------EEEeccC---CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCH
Q 008909 412 ---------------TEFTGPE---GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE 473 (549)
Q Consensus 412 ---------------~~~~~~~---~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~ 473 (549)
..+..+. ...+.||||||+.+.. .....+..+++.+|++|+|+|++++.+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-----------~~~~~~~~~i~~aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-----------ARNELSLGYVNNCHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-----------TCHHHHTHHHHSSSEEEEEEETTSTTCH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-----------hHHHHHHHHHHhCCEEEEEEeCCCccch
Confidence 0000000 0469999999996521 1234566788999999999999998888
Q ss_pred hHHHHHH-HHHHhCCcEEEEEecccCCCCCch--h---hhHH----HHHHHHHHHhcC--------CCCCEEEEccc---
Q 008909 474 QDCRIAE-RIEQEGKGCLIVVNKWDTIPNKNQ--Q---TATY----YEQDVREKLRAL--------DWAPIVYSTAI--- 532 (549)
Q Consensus 474 ~~~~~l~-~l~~~~~p~ivv~NK~Dl~~~~~~--~---~~~~----~~~~~~~~l~~~--------~~~~~i~iSA~--- 532 (549)
.+...+. .+...+.|+++|+||+|+...... . ..+. +...+...+... ...++++|||+
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al 296 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL 296 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence 8887664 555568899999999998653210 0 1111 122222233322 23479999999
Q ss_pred -----------cCCCHHHHHHHHHhhh
Q 008909 533 -----------AGQSVDKYVLYLATSF 548 (549)
Q Consensus 533 -----------~g~~v~~L~~~l~~~~ 548 (549)
+|.|+++|+..+.+.+
T Consensus 297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 297 RRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999999887643
No 301
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.66 E-value=4.3e-16 Score=144.76 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++....+....++++.+.....+.++|.. +.+|||+|...... .+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~----~~-------- 73 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE----WL-------- 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----C----TT--------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhh----hH--------
Confidence 46899999999999999999997543334444455555555666777754 57899999754111 00
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc--cCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~ 317 (549)
...++..+|++++|+|.+...+.... .+...+... ..+.|+++|+||+|+..
T Consensus 74 -------------------------~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 74 -------------------------HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp -------------------------GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred -------------------------HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 01335668999999998764332222 222333332 23689999999999865
Q ss_pred hhHHhH---HHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~~~---~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...... ..+ ...+.+++++||++|.|+.+++..+.+.+..
T Consensus 129 ~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 129 XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHh
Confidence 322111 111 2345678999999999999999999887653
No 302
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.65 E-value=3.9e-16 Score=143.83 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++.... ..+..+........+.+++ ..+.+|||||...+.....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 73 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP----------- 73 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-----------
Confidence 568999999999999999999976532 2222222222223344444 4689999999876433221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
..+..+|++|+|+|++.+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 74 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 74 ---------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred ---------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcc
Confidence 346789999999998864333322 233444444457899999999998742
Q ss_pred h---------------HHhHHHHH-HcC-CCceEeecc-CCCChhhhHHHHHHHh
Q 008909 319 G---------------IMQVSEFW-SLG-FSPLPISAI-SGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~---------------~~~~~~~~-~~~-~~~v~vSA~-~g~gi~~L~~~i~~~l 355 (549)
. ......+. ..+ .+++++||+ +|.|++++++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1 01112222 234 578999999 6899999999887654
No 303
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.9e-16 Score=149.37 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCce--EEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+|+|.+|||||||+|+|++....+....+.++.+.....+.+++.. +.+|||+|.... ..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----~~---------- 102 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----NE---------- 102 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----HH----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----hh----------
Confidence 46899999999999999999997653334444445555555566777754 578999996431 00
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH--ccCCCeEEEEeccCCCCh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPR 317 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ivv~NK~D~~~ 317 (549)
.....++..++++|+|+|.+...+.... .+...+.. ...+.|+++|+||+|+..
T Consensus 103 -----------------------~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 103 -----------------------WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp -----------------------HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred -----------------------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 0111234668999999998764332222 12233332 124789999999999965
Q ss_pred hhHHh---HHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 318 KGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 318 ~~~~~---~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
..... ... ....+++++++||++|.|++++++.+.+.+..
T Consensus 160 ~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 160 CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32111 111 12346788999999999999999999887643
No 304
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.65 E-value=7.2e-16 Score=164.57 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=88.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee---------------e------cCCCCceeeeeEEEEeccCCCeEEEEeCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI---------------V------SPISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~---------------~------~~~~gtt~~~~~~~~~~~~~~~i~l~DTp 428 (549)
+..+|+++|++|+|||||++++++..... + ....|+|+......+. +++..++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP-YHDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-ETTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-ECCeEEEEEECC
Confidence 34689999999999999999998632111 0 1133555554444454 367899999999
Q ss_pred CccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCC
Q 008909 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNK 502 (549)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~ 502 (549)
|+.+|.. .+.++++.+|++|+|+|++++...+...++..+...++|+++|+||+|+....
T Consensus 91 G~~df~~--------------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSE--------------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCH--------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred CChhHHH--------------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 9977632 34557899999999999999998888888888888899999999999997643
No 305
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.65 E-value=7.1e-16 Score=154.13 Aligned_cols=159 Identities=21% Similarity=0.210 Sum_probs=110.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-CCceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
..+|+++|.+|||||||+|+|++.....+...++.|.+...+.+.+ ++..+.+|||||...+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME--------------- 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh---------------
Confidence 3579999999999999999999875455667888899888887776 557899999999865300
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHH---HHccCCCeEEEEeccCCCCh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWL---RKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l---~~~~~~~p~ivv~NK~D~~~ 317 (549)
..+.......+..+|++|+|+|++.+.+..+.. +..++ .....+.|+++|+||+|+..
T Consensus 68 ------------------~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 68 ------------------NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp ------------------HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ------------------hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 000112335668899999999998765444432 22333 22345799999999999976
Q ss_pred hhHH---------hHHHHH-HcC---CCceEeeccCCCChhhhHHHHHHHh
Q 008909 318 KGIM---------QVSEFW-SLG---FSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 318 ~~~~---------~~~~~~-~~~---~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.... ....+. ..| .+++++||++ .|+.+++..+...+
T Consensus 130 ~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 130 LDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 2111 111222 234 5789999999 77877777665543
No 306
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=6.1e-16 Score=144.04 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=101.6
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
...+|+++|.+|||||||+|+|++.... ..+..+........+.+++ ..+.+|||||...+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 70 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------------- 70 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC--CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC--CcccCccccceeEEEEECCEEEEEEEEeCCChHHhH--------------
Confidence 4578999999999999999999976422 1111111122222333444 468999999976421
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc---cCCCeEEEEeccCCC
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCES 315 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~---~~~~p~ivv~NK~D~ 315 (549)
......+..+|++++|+|++.+.+.... .+...+... ..+.|+++|+||+|+
T Consensus 71 ------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl 126 (199)
T 2gf0_A 71 ------------------------AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126 (199)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred ------------------------HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 1233556789999999998764322211 233333331 236899999999998
Q ss_pred ChhhH--HhHHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 316 PRKGI--MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 316 ~~~~~--~~~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
..... ..... ....+++++++||++|.|+.++++.+.+.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 127 TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp SSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred CccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 75321 11111 22346789999999999999999999887653
No 307
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.64 E-value=4.4e-16 Score=146.33 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+|+|++.... ..+..++.......+.+++ ..+.+|||||...+.....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 94 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP----------- 94 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-----------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-----------
Confidence 568999999999999999999986532 2222222222233444444 4689999999876433221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
..+..+|++|+|+|++.+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 95 ---------------------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 95 ---------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred ---------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccc
Confidence 346789999999998864333322 233445544457899999999998642
Q ss_pred h---------------HHhHHHHH-HcC-CCceEeecc-CCCChhhhHHHHHHHh
Q 008909 319 G---------------IMQVSEFW-SLG-FSPLPISAI-SGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~---------------~~~~~~~~-~~~-~~~v~vSA~-~g~gi~~L~~~i~~~l 355 (549)
. ......+. ..+ .+++++||+ +|.|++++++.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 1 01112222 234 578999999 6899999999887654
No 308
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.64 E-value=1e-15 Score=159.28 Aligned_cols=156 Identities=21% Similarity=0.160 Sum_probs=110.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCc--eeeecCCCccccceeeeeee---------------C--------CceEEEEE
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFW---------------G--------EHEFMLVD 217 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~---------------~--------~~~~~liD 217 (549)
.++|+++|++|+|||||+++|+|... ......+|+|.+.......+ . ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 56899999999999999999997532 12223456677655433322 0 15789999
Q ss_pred cccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC-CcchHHHHHH
Q 008909 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADW 296 (549)
Q Consensus 218 TpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~-~~~~~~~~~~ 296 (549)
|||+.++. ....+.+..+|++|+|+|++.+. ..+..+.+..
T Consensus 90 tPGh~~f~--------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~ 131 (410)
T 1kk1_A 90 APGHEALM--------------------------------------TTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 131 (410)
T ss_dssp CSSHHHHH--------------------------------------HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred CCChHHHH--------------------------------------HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH
Confidence 99986421 23446678899999999999876 5666666665
Q ss_pred HHHccCCCeEEEEeccCCCChhhHH-----hHHHHHH----cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 297 LRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 297 l~~~~~~~p~ivv~NK~D~~~~~~~-----~~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+... ...|+++|+||+|+...... ....+.. .+++++++||++|.|+.+|++.+...++.
T Consensus 132 ~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 132 LQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 5543 24589999999999764321 1122222 25689999999999999999999887653
No 309
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.63 E-value=1.1e-15 Score=158.79 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCce----eeecCCCc----------ccccee-----eeeeeCCceEEEEEcccc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA----IVVDEPGV----------TRDRMY-----GRSFWGEHEFMLVDTGGV 221 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~----~~~~~~~~----------t~~~~~-----~~~~~~~~~~~liDTpG~ 221 (549)
....+|+++|++|+|||||+|+|++.... ......+. +..... .........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 44689999999999999999999984211 11110000 000000 000111267899999998
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC-CcchHHHHHHHHHc
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADWLRKN 300 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~-~~~~~~~~~~l~~~ 300 (549)
.++. .....++..+|++|+|+|++.+. ..+..++...+...
T Consensus 86 ~~~~--------------------------------------~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~ 127 (403)
T 3sjy_A 86 EVLM--------------------------------------ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127 (403)
T ss_dssp GGGH--------------------------------------HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH
T ss_pred HHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc
Confidence 6521 24456788899999999999876 55666666655543
Q ss_pred cCCCeEEEEeccCCCChhhHHh-----HHHHHH----cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 301 YMDKFIILAVNKCESPRKGIMQ-----VSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 301 ~~~~p~ivv~NK~D~~~~~~~~-----~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
..+|+++|+||+|+.+..... ...+.. .+.+++++||++|.|+.+|++.+.+.++.
T Consensus 128 -~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 128 -GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp -TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 246899999999997654221 111111 14579999999999999999999887653
No 310
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=2.4e-15 Score=141.39 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=106.5
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCC-CeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhh-
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL- 446 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~- 446 (549)
....+++++|.+|+|||||+|++++.. ...+.+.+|+|..... +.. ++ .+.+|||||+.....-. ...+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~---~~~~~~~ 96 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPE---EMKRKWQ 96 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC---------CCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCH---HHHHHHH
Confidence 345689999999999999999999875 3344666777765322 222 22 68899999985421100 000111
Q ss_pred -HHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC-CC
Q 008909 447 -SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD-WA 524 (549)
Q Consensus 447 -~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~-~~ 524 (549)
.+..+++..+.++++++|+|++.+.+..+..+..++...+.|+++|+||+|+....+.. .....+...+.... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~---~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK---AQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH---HHHHHHHHHHGGGCSCE
T ss_pred HHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH---HHHHHHHHHHHhcCCCC
Confidence 12222333367899999999998877766667777777899999999999987642211 11233444444332 35
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.++++||+++.|+++++++|.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 311
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.63 E-value=1.1e-15 Score=164.60 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=103.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee--------------eecCCCccccceeeeeeeC---C--ceEEEEEcccccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------------VVDEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLN 223 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---~--~~~~liDTpG~~~ 223 (549)
..+|+|+|++|+|||||+++|+...... .....|+|.......+.+. + ..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 5689999999999999999998532111 1113456666555555553 2 5789999999976
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+. ....+++..+|++|+|+|+..+...+....+..+... +
T Consensus 84 F~--------------------------------------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~--~ 123 (599)
T 3cb4_D 84 FS--------------------------------------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM--D 123 (599)
T ss_dssp GH--------------------------------------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT--T
T ss_pred HH--------------------------------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--C
Confidence 32 2344678889999999999998888777666555544 7
Q ss_pred CeEEEEeccCCCChhhHHhHH-HH-HHcCC---CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 304 KFIILAVNKCESPRKGIMQVS-EF-WSLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~~-~~-~~~~~---~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.|+++|+||+|+......... .+ ...++ +++++||++|.|+.++++.+.+.++..
T Consensus 124 ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 124 LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred CCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 899999999999764322211 11 12344 489999999999999999999887643
No 312
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=1.8e-17 Score=155.53 Aligned_cols=154 Identities=15% Similarity=0.090 Sum_probs=102.2
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
....+|+++|.+|||||||+++|++... ......++.......+.+++. .+.+|||||...+...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL----------- 94 (204)
Confidence 3467899999999999999999996542 233334444443444445554 4569999998653321
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
....+..+|++++|+|++.+.+.... .+...+.....+.|+++|+||+|+.
T Consensus 95 ---------------------------~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 95 ---------------------------RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 22456789999999998776444432 3344444433478999999999987
Q ss_pred hhhH------------Hh---HHHH-HHcCC-CceEeeccCCCChhhhHHHHHHH
Q 008909 317 RKGI------------MQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (549)
Q Consensus 317 ~~~~------------~~---~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~ 354 (549)
.... .. ...+ ...+. +++++||++|.|++++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 5321 00 0011 12244 78999999999999999887653
No 313
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.63 E-value=9.7e-16 Score=163.78 Aligned_cols=155 Identities=20% Similarity=0.194 Sum_probs=108.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
..+|+|+|.+|||||||+|+|++.... . ...|.+.....+.+.+..+.+|||||...+...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------------- 382 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV--T--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL--------------- 382 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--C--CCCCSSEEEEEEESSSCEEEEEEECCCGGGSGG---------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC--C--cCCccceeEEEEEeCCEEEEEEECCCcHHHHHH---------------
Confidence 469999999999999999999987632 2 233667777778888899999999997664332
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHH-ccCCCeEEEEeccCCCChhh
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRK-NYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~-~~~~~p~ivv~NK~D~~~~~ 319 (549)
+..++..+|++|+|+|++.+.+.... .+...+.. ...+.|+++|+||+|+....
T Consensus 383 -----------------------~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 439 (497)
T 3lvq_E 383 -----------------------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 439 (497)
T ss_dssp -----------------------GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC
T ss_pred -----------------------HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC
Confidence 12557889999999999875333222 12222221 12478999999999986532
Q ss_pred HH-hHHHHHH------cCCCceEeeccCCCChhhhHHHHHHHhhhhc
Q 008909 320 IM-QVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 320 ~~-~~~~~~~------~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~~ 359 (549)
.. ....... .+++++++||++|.|++++++++.+.+.+..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 440 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 21 1111111 1235899999999999999999988776443
No 314
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.63 E-value=1.1e-15 Score=140.94 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCC-Cccccceeeeeee-----CCceEEEEEcccccccCCCCcchhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFW-----GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~i~ 236 (549)
..+|+|+|.+|||||||+++|++........+. ....+.....+.+ ....+.+|||||...+....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------- 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-------- 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh--------
Confidence 368999999999999999999985322222222 2222222222222 24578999999986543321
Q ss_pred hhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC-cch-HHHHHHHHHccCCCeEEEEeccCC
Q 008909 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT-AAD-EEIADWLRKNYMDKFIILAVNKCE 314 (549)
Q Consensus 237 ~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~-~~~-~~~~~~l~~~~~~~p~ivv~NK~D 314 (549)
..++..++++++|+|.+.+.. ... ..++..+.....+.|+++|+||+|
T Consensus 74 ------------------------------~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 74 ------------------------------PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp ------------------------------HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred ------------------------------HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 134567899999999876421 111 122233333334789999999999
Q ss_pred CChhhHHh-----HHHHHH--cCCC----ceEeeccCCC-ChhhhHHHHHHHhhh
Q 008909 315 SPRKGIMQ-----VSEFWS--LGFS----PLPISAISGT-GTGELLDLVCSELKK 357 (549)
Q Consensus 315 ~~~~~~~~-----~~~~~~--~~~~----~v~vSA~~g~-gi~~L~~~i~~~l~~ 357 (549)
+....... ....+. .+++ ++++||++|. |+.+|++.+.+.+.+
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp GCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 87643321 111111 3455 7899999997 999999998877654
No 315
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=2.1e-15 Score=156.79 Aligned_cols=157 Identities=18% Similarity=0.104 Sum_probs=101.5
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCc--eeeecCCCccccceeeeeee---------------C--C------ceEEEE
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFW---------------G--E------HEFMLV 216 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~---------------~--~------~~~~li 216 (549)
...+|+++|++|+|||||+++|++... ......+|+|.+.......+ . + ..+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 457899999999999999999997532 22233456676654332221 1 1 578999
Q ss_pred EcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC-CcchHHHHH
Q 008909 217 DTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIAD 295 (549)
Q Consensus 217 DTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~-~~~~~~~~~ 295 (549)
||||+.++. ....+.+..+|++|+|+|++.+. ..+..+.+.
T Consensus 87 DtPGh~~f~--------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~ 128 (408)
T 1s0u_A 87 DSPGHETLM--------------------------------------ATMLSGASLMDGAILVIAANEPCPQPQTKEHLM 128 (408)
T ss_dssp ECSSHHHHH--------------------------------------HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred ECCCHHHHH--------------------------------------HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH
Confidence 999986421 23345567889999999999876 566666665
Q ss_pred HHHHccCCCeEEEEeccCCCChhhH-----HhHHHHHH----cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 296 WLRKNYMDKFIILAVNKCESPRKGI-----MQVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 296 ~l~~~~~~~p~ivv~NK~D~~~~~~-----~~~~~~~~----~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.+... ...|+++|+||+|+..... .+...+.. .+.+++++||++|.|+++|++.+...++.
T Consensus 129 ~~~~l-~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 129 ALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHT-TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHc-CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 55433 2358999999999875421 11222322 25689999999999999999999876653
No 316
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.63 E-value=1.6e-15 Score=155.00 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=109.3
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|++|+|||||+++|+ ..++|.+.....+.+.+..+.+|||||+.++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~------------------- 74 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL------------------- 74 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-------------------
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-------------------
Confidence 89999999999999999998 33566677677777788899999999997531
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeE-EEEec-cCCCChhhHHh
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI-ILAVN-KCESPRKGIMQ 322 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~-ivv~N-K~D~~~~~~~~ 322 (549)
......+..+|++|+|+| ..+...+..++...+... +.|. ++++| |+|+ +.....
T Consensus 75 -------------------~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~ 131 (370)
T 2elf_A 75 -------------------KSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAID 131 (370)
T ss_dssp -------------------HHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHH
T ss_pred -------------------HHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHH
Confidence 233466788999999999 877777777777666654 6676 88899 9999 543211
Q ss_pred -----HHHHHH----cCCCceE--eeccC---CCChhhhHHHHHHHhhhh
Q 008909 323 -----VSEFWS----LGFSPLP--ISAIS---GTGTGELLDLVCSELKKV 358 (549)
Q Consensus 323 -----~~~~~~----~~~~~v~--vSA~~---g~gi~~L~~~i~~~l~~~ 358 (549)
...+.. ..+++++ +||++ +.|+++|++.+.+.++..
T Consensus 132 ~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 132 ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 111211 1257899 99999 999999999998877643
No 317
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.63 E-value=1.5e-15 Score=163.35 Aligned_cols=156 Identities=26% Similarity=0.341 Sum_probs=107.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee--------------eecCCCccccceeeeeeeC---C--ceEEEEEcccccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------------VVDEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLN 223 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---~--~~~~liDTpG~~~ 223 (549)
.++|+|+|++|+|||||+++|++..... .....|+|.......+.+. + ..+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 5689999999999999999997531111 1112455655554455443 2 5688999999976
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+.. ...+++..+|.+|+|+|+..+...+....+..+... +
T Consensus 86 F~~--------------------------------------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~--~ 125 (600)
T 2ywe_A 86 FSY--------------------------------------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ--D 125 (600)
T ss_dssp GHH--------------------------------------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT--T
T ss_pred HHH--------------------------------------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC--C
Confidence 321 334667889999999999998887777666555544 8
Q ss_pred CeEEEEeccCCCChhhHHhHHH-HH-HcCC---CceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 304 KFIILAVNKCESPRKGIMQVSE-FW-SLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~~~-~~-~~~~---~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
.|+++|+||+|+.......... .. ..++ +++++||++|.|+.++++.+.+.++..
T Consensus 126 ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 9999999999997643322222 21 2344 489999999999999999999888643
No 318
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.62 E-value=2.9e-15 Score=139.80 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=104.8
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+++++|.+|+|||||++++++... .....++.+.+.....+.. +| ..+.+|||||+.++..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~------------ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRI------------ 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCC------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhh------------
Confidence 35899999999999999999998653 2233344444444444443 44 35778999998764321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.+|++++|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+........ ......... ...
T Consensus 71 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~-----~~a~~l~~~-~~~ 142 (199)
T 2f9l_A 71 --TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT-----DEARAFAEK-NNL 142 (199)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-----HHHHHHHHH-TTC
T ss_pred --hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH-----HHHHHHHHH-cCC
Confidence 11246789999999999875544443 35555544 3689999999999965333221 122333333 345
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.++.+||+++.|+++++++|.+.+
T Consensus 143 ~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 143 SFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999997653
No 319
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.62 E-value=3.7e-16 Score=170.91 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=121.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCee-----ec------CCC------CceeeeeEEEEeccCCCeEEEEeCCCccch
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----VS------PIS------GTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~~------~~~------gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~ 433 (549)
.++|+++|+.++|||||..+|+...... +. +.. |+|+......+. |++.+|+|+|||||.+|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHH
Confidence 4689999999999999999997421111 11 111 677766555554 57889999999999998
Q ss_pred hhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHH-
Q 008909 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ- 512 (549)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~- 512 (549)
. ..+.+.++.+|++|+|||+..++..+...+|+++.+.++|.|+++||+|+.........+++.+
T Consensus 81 ~--------------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~ 146 (638)
T 3j25_A 81 L--------------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEK 146 (638)
T ss_dssp H--------------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHT
T ss_pred H--------------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHH
Confidence 4 3466789999999999999999999999999999999999999999999876543222211111
Q ss_pred -------------------------------------------------------HHHHHHhcCCCCCEEEEccccCCCH
Q 008909 513 -------------------------------------------------------DVREKLRALDWAPIVYSTAIAGQSV 537 (549)
Q Consensus 513 -------------------------------------------------------~~~~~l~~~~~~~~i~iSA~~g~~v 537 (549)
.+...+......|++..||++|.||
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv 226 (638)
T 3j25_A 147 LSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGI 226 (638)
T ss_dssp TCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSH
T ss_pred hCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCc
Confidence 1111222334568888999999999
Q ss_pred HHHHHHHHhh
Q 008909 538 DKYVLYLATS 547 (549)
Q Consensus 538 ~~L~~~l~~~ 547 (549)
+.|++.+...
T Consensus 227 ~~LLd~i~~~ 236 (638)
T 3j25_A 227 DNLIEVITNK 236 (638)
T ss_dssp HHHHHHHHHS
T ss_pred hhHhhhhhcc
Confidence 9999998764
No 320
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.62 E-value=4.4e-15 Score=163.77 Aligned_cols=117 Identities=20% Similarity=0.174 Sum_probs=87.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe-----eecC------------CCCceeeeeEEEEeccCCCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSP------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~-----~~~~------------~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
...+|+++|++|+|||||+++++..... .+.. ..|+|+......+. +++..++||||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCccc
Confidence 4568999999999999999999842100 0110 33566655544554 3678999999999977
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
|. ..+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...
T Consensus 90 f~--------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FT--------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CH--------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred hH--------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 53 23456789999999999999999999999999999999999999999999754
No 321
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.62 E-value=2.4e-15 Score=157.64 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=100.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeee----------cC----------------------CCccccceeeeeeeCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV----------DE----------------------PGVTRDRMYGRSFWGE 210 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~----------~~----------------------~~~t~~~~~~~~~~~~ 210 (549)
..+|+++|++|+|||||+|+|++....... .. .|+|.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 468999999999999999999854311111 11 2445555555556677
Q ss_pred ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcch
Q 008909 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (549)
Q Consensus 211 ~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~ 290 (549)
..+.+|||||+.++. .....++..+|++|+|+|++.+...+.
T Consensus 104 ~~~~iiDtpGh~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~g~~~qt 145 (434)
T 1zun_B 104 RKFIIADTPGHEQYT--------------------------------------RNMATGASTCDLAIILVDARYGVQTQT 145 (434)
T ss_dssp EEEEEEECCCSGGGH--------------------------------------HHHHHHHTTCSEEEEEEETTTCSCHHH
T ss_pred ceEEEEECCChHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHH
Confidence 889999999986532 133456789999999999999887777
Q ss_pred HHHHHHHHHccCCCeEEEEeccCCCChh--hHH-----hHHHHH-HcC-----CCceEeeccCCCChhhh
Q 008909 291 EEIADWLRKNYMDKFIILAVNKCESPRK--GIM-----QVSEFW-SLG-----FSPLPISAISGTGTGEL 347 (549)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivv~NK~D~~~~--~~~-----~~~~~~-~~~-----~~~v~vSA~~g~gi~~L 347 (549)
.+++..+... ...|+++|+||+|+.+. ... ....+. ..+ .+++++||++|.|+.++
T Consensus 146 ~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 146 RRHSYIASLL-GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 7766655543 22468999999999752 111 111222 234 46899999999999873
No 322
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.62 E-value=4.5e-15 Score=163.70 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=88.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-----------ecC------CCCceeeeeEEEEeccCCCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----------~~~------~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
...+|+++|++|+|||||+|+|++..... +.+ .+|+|+......+. +++.+++||||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCcc
Confidence 35689999999999999999998421110 111 34666665555554 3678999999999977
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
|.. .+.++++.+|++|+|+|++++.+.++..+|..+...++|+++|+||+|+...
T Consensus 88 f~~--------------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTV--------------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCH--------------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred hHH--------------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 532 2455788999999999999999999999999999999999999999999764
No 323
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.62 E-value=1.6e-15 Score=161.17 Aligned_cols=145 Identities=22% Similarity=0.229 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCc------------------------------eeeecCCCccccceeeeeeeCCce
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNR------------------------------AIVVDEPGVTRDRMYGRSFWGEHE 212 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~~~ 212 (549)
..+|+++|++|+|||||+|+|++... ......+|+|.+.....+...+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 57899999999999999999975411 112234578888888788888899
Q ss_pred EEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-------
Q 008909 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------- 285 (549)
Q Consensus 213 ~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~------- 285 (549)
+.+|||||+.++. ..+..++..+|++|+|+|++.+
T Consensus 113 ~~iiDTPG~~~f~--------------------------------------~~~~~~~~~aD~~llVvDa~~g~~~~~~~ 154 (483)
T 3p26_A 113 FTIVDAPGHRDFV--------------------------------------PNAIMGISQADMAILCVDCSTNAFESGFD 154 (483)
T ss_dssp EEEECCCCCGGGH--------------------------------------HHHHHHHTTCSEEEEEEECCC------CC
T ss_pred EEEEECCCcHHHH--------------------------------------HHHHHhhhhCCEEEEEEECCCCccccccc
Confidence 9999999996521 3455778899999999999886
Q ss_pred CCcchHHHHHHHHHccCCCeEEEEeccCCCChhhH---Hh----HHHHH-Hc-----CCCceEeeccCCCChhh
Q 008909 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI---MQ----VSEFW-SL-----GFSPLPISAISGTGTGE 346 (549)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~---~~----~~~~~-~~-----~~~~v~vSA~~g~gi~~ 346 (549)
...+..++...+... ...|+++|+||+|+.+... .. ...+. .. +.+++++||++|.|+.+
T Consensus 155 ~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 155 LDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 334555555555443 2356999999999875211 11 11111 12 34689999999999985
No 324
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.62 E-value=1.2e-15 Score=153.98 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceE--EEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEF--MLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|+|||||++++++.. ....+.+++.......+.+++..+ .+|||||...+.....
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 221 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP----------- 221 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG-----------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH-----------
Confidence 4689999999999999999999664 234455566555555666777654 5999999876543221
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH--HHHHHHHHccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivv~NK~D~~~~ 318 (549)
.++..+|++++|+|++.+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 222 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 222 ---------------------------LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred ---------------------------HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 446789999999998875443332 233445544458899999999998542
Q ss_pred hH---------------HhHHHH-HHcCC-CceEeeccCCCChhhhHHHHHHHhh
Q 008909 319 GI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 319 ~~---------------~~~~~~-~~~~~-~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. .....+ ...+. +++++||++|.|+.++++.+.+.+.
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 11 011111 22454 7899999999999999999887653
No 325
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.62 E-value=9.7e-15 Score=161.19 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=89.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-----e------cC------CCCceeeeeEEEEeccCC-------CeEEEE
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----V------SP------ISGTTRDAIDTEFTGPEG-------QKFRLI 425 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~------~~------~~gtt~~~~~~~~~~~~~-------~~i~l~ 425 (549)
+..+|+++|+.|+|||||+++|+...... + .+ ..|+|+......+.+ ++ ..++||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINII 87 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEE
Confidence 45689999999999999999997532110 0 00 235565544444443 33 789999
Q ss_pred eCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCC
Q 008909 426 DTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (549)
Q Consensus 426 DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~ 501 (549)
||||+.+|.. .+.++++.+|++|+|||++++...+...+|..+...++|+++|+||+|+...
T Consensus 88 DTPG~~df~~--------------~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTI--------------EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHH--------------HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9999987632 3455788999999999999998888889999888889999999999998754
No 326
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.61 E-value=4.9e-15 Score=144.70 Aligned_cols=124 Identities=24% Similarity=0.292 Sum_probs=92.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.....+...+++|.......+.. ++..+.||||||+.++.... + ....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~------~-~~~~ 106 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVN------H-QALE 106 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEEC------H-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccch------H-HHHH
Confidence 35689999999999999999999987667778888888877666653 67899999999998764321 1 1111
Q ss_pred HHHHHH--hcCCcEEEEEEccc-cCCHhHHHHHHHHHHh-----CCcEEEEEecccCCCC
Q 008909 450 RAFRAI--RRSDVVALVIEAMA-CITEQDCRIAERIEQE-----GKGCLIVVNKWDTIPN 501 (549)
Q Consensus 450 ~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~l~~l~~~-----~~p~ivv~NK~Dl~~~ 501 (549)
...+++ ..+|++++|++++. +++..+..+++.+.+. ..|+++|+||+|+...
T Consensus 107 ~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 107 LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 122222 38999999988765 4667777888877764 2499999999998644
No 327
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.61 E-value=8.6e-15 Score=160.86 Aligned_cols=115 Identities=23% Similarity=0.248 Sum_probs=89.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCee-----e------cC------CCCceeeeeEEEEeccCCCeEEEEeCCCccc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----V------SP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~-----~------~~------~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~ 432 (549)
...+++++|++|+|||||++++++..... + .. ..|+|.......+. +.+..++||||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCccc
Confidence 35689999999999999999998532110 0 00 12445444444443 3577899999999976
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCC
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~ 499 (549)
|. ..+.++++.+|++++|+|++++...+...++..+...++|+++|+||+|+.
T Consensus 87 f~--------------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FV--------------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp GH--------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred hH--------------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 53 235567899999999999999999999999999999999999999999987
No 328
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.61 E-value=1.3e-15 Score=155.41 Aligned_cols=172 Identities=21% Similarity=0.285 Sum_probs=105.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCe-----eecCCCC----------------------ceeee------------
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSPISG----------------------TTRDA------------ 409 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~-----~~~~~~g----------------------tt~~~------------ 409 (549)
...++|+++|.+|+|||||+|+|+|.... .+...|+ +|++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34578999999999999999999997653 2333343 22220
Q ss_pred -----------eEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcC-CcEEEEEEccccCCHhHH-
Q 008909 410 -----------IDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRS-DVVALVIEAMACITEQDC- 476 (549)
Q Consensus 410 -----------~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~a-d~~llVvD~~~~~~~~~~- 476 (549)
....+...++..+.||||||+.+...... ...........+..+++.+ +++++|+|++..+..++.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQ-PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTC-CTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCC-chhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 01111112356899999999965211000 0011111122334455555 466667777766666655
Q ss_pred HHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHH-Hh-cCCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 477 RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK-LR-ALDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 477 ~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-l~-~~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
.+++.+...+.|+++|+||+|+....... ...+... +. ..++.+++++||++|.|+++|++.+.+
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~-----~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDA-----RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGSCTTCCC-----HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCcCCCceEEEeccccccCcchhH-----HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 36777777789999999999997643311 1111111 11 123456888999999999999998865
No 329
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.60 E-value=8.8e-16 Score=152.88 Aligned_cols=166 Identities=22% Similarity=0.288 Sum_probs=104.1
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCce-----eeecCCC----------------------cccccee----------
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRDRMY---------- 203 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~-----~~~~~~~----------------------~t~~~~~---------- 203 (549)
...++|+++|.+|||||||+|+|+|.... .++..|+ +|.+...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999988643 2233343 2222100
Q ss_pred -------------eeeee-CCceEEEEEcccccccCCC--CcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHH
Q 008909 204 -------------GRSFW-GEHEFMLVDTGGVLNVSKS--QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (549)
Q Consensus 204 -------------~~~~~-~~~~~~liDTpG~~~~~~~--~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~ 267 (549)
..+.. .+.++.+|||||+.+.... ++. +...+...+.
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~---------------------------~~~~~~~~~~ 156 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPD---------------------------IEFQIRDMLM 156 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTT---------------------------HHHHHHHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCch---------------------------HHHHHHHHHH
Confidence 00011 1368999999999753210 110 0011233455
Q ss_pred HHhhhccEEE-EEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhhH--HhHHHH--HHc--CC-CceEeec
Q 008909 268 AAIEESCVII-FLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--WSL--GF-SPLPISA 338 (549)
Q Consensus 268 ~~i~~~d~il-lVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~~--~~~~~~--~~~--~~-~~v~vSA 338 (549)
.++..++.++ +|+|++.++...+. .+.+.+... +.|+++|+||+|+.+... ...... ... ++ +++++||
T Consensus 157 ~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA 234 (299)
T 2aka_B 157 QFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 234 (299)
T ss_dssp HHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCC
T ss_pred HHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCC--CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCCh
Confidence 6677777555 79999887666653 345555433 789999999999875432 111110 011 22 5788999
Q ss_pred cCCCChhhhHHHHHHHh
Q 008909 339 ISGTGTGELLDLVCSEL 355 (549)
Q Consensus 339 ~~g~gi~~L~~~i~~~l 355 (549)
++|.|+.++++.+....
T Consensus 235 ~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 235 KDIDGKKDITAALAAER 251 (299)
T ss_dssp BCTTSCBCHHHHHHHHH
T ss_pred hhccccccHHHHHHHHH
Confidence 99999999999887643
No 330
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.60 E-value=3.7e-15 Score=163.17 Aligned_cols=204 Identities=19% Similarity=0.246 Sum_probs=125.3
Q ss_pred EeeccCCCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-----------
Q 008909 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS----------- 403 (549)
Q Consensus 335 ~vSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~----------- 403 (549)
..++..+.|+++++..+.+......... .......++|+++|.+++||||++|+++|...+..+..+
T Consensus 17 ~~~~~~~~~~~~li~~inkl~d~l~~lg--~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~ 94 (772)
T 3zvr_A 17 RGSHMGNRGMEDLIPLVNRLQDAFSAIG--QNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLV 94 (772)
T ss_dssp --------CGGGHHHHHHHHHHHHHTTT--CCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEE
T ss_pred cccccccccHHHHHHHHHHHHHHHHhcC--ccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEee
Confidence 3567778898888877655443222211 012234679999999999999999999997653333221
Q ss_pred ---------------------------------------CceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhh
Q 008909 404 ---------------------------------------GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (549)
Q Consensus 404 ---------------------------------------gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e 444 (549)
+++.+.+...+..++..++.|+||||+.....-. .....
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~--qp~di 172 (772)
T 3zvr_A 95 NSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGD--QPPDI 172 (772)
T ss_dssp ECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSC--CCCHH
T ss_pred cCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCC--CcHHH
Confidence 1122223333333455679999999997521100 00101
Q ss_pred hhHHH-HHHHHH-hcCCcEEEEEEccccCCHhHH-HHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHh-c
Q 008909 445 ALSVN-RAFRAI-RRSDVVALVIEAMACITEQDC-RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-A 520 (549)
Q Consensus 445 ~~~~~-~~~~~~-~~ad~~llVvD~~~~~~~~~~-~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~-~ 520 (549)
...+. .+..++ ..+|++++|+|++.++..++. .++..+...+.|+|+|+||+|+........ .+.. .+.+. .
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~--~il~--~~~~~l~ 248 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLE--NKLLPLR 248 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSH--HHHT--TCSSCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhH--HHHH--HHhhhhh
Confidence 11122 223334 688999999999998877776 788888888999999999999986543211 0000 00111 1
Q ss_pred CCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 521 LDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 521 ~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
.++.+++++||++|.|+++|++.+.+
T Consensus 249 lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 249 RGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ccCCceEEecccccccchhHHHHHHH
Confidence 24567899999999999999998875
No 331
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=1.4e-15 Score=143.97 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=75.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeee--cCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~--~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
...+|+++|.+|+|||||++++++...... ...++++.+. .+..+.+|||||+.++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~----------- 71 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYK----------- 71 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHH-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHH-----------
Confidence 457899999999999999999998653221 2333333322 4567899999999764321
Q ss_pred HHHHHH-HHhcCCcEEEEEEcc-ccCC-HhHHHHHHHHHH-------hCCcEEEEEecccCCCCCc
Q 008909 448 VNRAFR-AIRRSDVVALVIEAM-ACIT-EQDCRIAERIEQ-------EGKGCLIVVNKWDTIPNKN 503 (549)
Q Consensus 448 ~~~~~~-~~~~ad~~llVvD~~-~~~~-~~~~~~l~~l~~-------~~~p~ivv~NK~Dl~~~~~ 503 (549)
....++ .+..+|++++|+|++ ++.+ .....++..+.. .++|+++|+||+|+.....
T Consensus 72 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 72 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 111111 123489999999998 4322 223334443332 4799999999999987654
No 332
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.59 E-value=1.4e-15 Score=158.06 Aligned_cols=154 Identities=17% Similarity=0.126 Sum_probs=110.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCC--------Ccee--e------ecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGG--------NRAI--V------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~--------~~~~--~------~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
..+|+++|++|+|||||+++|++. .... . ....|+|.+.....+...+..+.+|||||+.++.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~- 89 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI- 89 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH-
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH-
Confidence 568999999999999999999863 1000 0 0134666666555566677899999999997531
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (549)
..+..++..+|++|+|+|++.+...+..+++..+... +.|
T Consensus 90 -------------------------------------~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~--~ip~ 130 (405)
T 2c78_A 90 -------------------------------------KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPY 130 (405)
T ss_dssp -------------------------------------HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT--TCCC
T ss_pred -------------------------------------HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCE
Confidence 2344677889999999999988877777777766654 778
Q ss_pred EEEEeccCCCCh-hhHHh-----HHHHH-HcC-----CCceEeeccCCCC------------------hhhhHHHHHHHh
Q 008909 306 IILAVNKCESPR-KGIMQ-----VSEFW-SLG-----FSPLPISAISGTG------------------TGELLDLVCSEL 355 (549)
Q Consensus 306 ~ivv~NK~D~~~-~~~~~-----~~~~~-~~~-----~~~v~vSA~~g~g------------------i~~L~~~i~~~l 355 (549)
+++++||+|+.. ..... ...+. ..+ .+++++||++|.| +.+|++.+...+
T Consensus 131 iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp EEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred EEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 889999999874 22111 11222 223 5789999999987 677777777666
Q ss_pred h
Q 008909 356 K 356 (549)
Q Consensus 356 ~ 356 (549)
+
T Consensus 211 p 211 (405)
T 2c78_A 211 P 211 (405)
T ss_dssp C
T ss_pred C
Confidence 4
No 333
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.59 E-value=2e-15 Score=156.33 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=109.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCc------e---------eeecCCCccccceeeeeeeCCceEEEEEcccccccCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 227 (549)
..+|+++|++|+|||||+++|++... . ......|+|.+.....+...+..+.+|||||+.++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~-- 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV-- 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH--
Confidence 35799999999999999999986310 0 011234666665554455567899999999996521
Q ss_pred CcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-E
Q 008909 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (549)
Q Consensus 228 ~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ 306 (549)
.....++..+|++|+|+|++.+...+..+++..+... +.| +
T Consensus 81 ------------------------------------~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~vp~i 122 (397)
T 1d2e_A 81 ------------------------------------KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI--GVEHV 122 (397)
T ss_dssp ------------------------------------HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCCE
T ss_pred ------------------------------------HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCeE
Confidence 2344667889999999999998887777777666654 778 6
Q ss_pred EEEeccCCCCh-hhHH-----hHHHHH-HcC-----CCceEeeccCCCC----------hhhhHHHHHHHhhh
Q 008909 307 ILAVNKCESPR-KGIM-----QVSEFW-SLG-----FSPLPISAISGTG----------TGELLDLVCSELKK 357 (549)
Q Consensus 307 ivv~NK~D~~~-~~~~-----~~~~~~-~~~-----~~~v~vSA~~g~g----------i~~L~~~i~~~l~~ 357 (549)
++++||+|+.. .... +...+. ..+ .+++++||++|.| +.+|++.+..+++.
T Consensus 123 ivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp EEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 89999999874 2211 111222 223 5789999999764 77888888776653
No 334
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.2e-14 Score=145.62 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=88.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~ 450 (549)
..+|+++|.||+|||||+|+|++.+ ..+.++|+||++.....+.+ .+.+++++||||+.+.. ........+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a-------~~~~~~g~~ 142 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGA-------KDGRGRGKQ 142 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC------------CHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCc-------hhhhHHHHH
Confidence 4589999999999999999999976 67889999999999888875 67899999999996532 223334567
Q ss_pred HHHHHhcCCcEEEEEEccccCCHhHHHHH-HHHHHh-----CCcEEEEEecccC
Q 008909 451 AFRAIRRSDVVALVIEAMACITEQDCRIA-ERIEQE-----GKGCLIVVNKWDT 498 (549)
Q Consensus 451 ~~~~~~~ad~~llVvD~~~~~~~~~~~~l-~~l~~~-----~~p~ivv~NK~Dl 498 (549)
++..++.||++++|+|++++. .+...+ .++... .+|.++++||+|.
T Consensus 143 ~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 143 VIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 888899999999999998753 233322 333332 4567777788775
No 335
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.58 E-value=1.5e-15 Score=156.44 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=48.8
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEec--------------------cC---CCeEEEEeCCC
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------PE---GQKFRLIDTAG 429 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~--------------------~~---~~~i~l~DTpG 429 (549)
+|+++|.+|+|||||+|++++.. ..+++.|++|++........ .+ ..++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 68999999999999999999986 67788999998876654211 01 24799999999
Q ss_pred ccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc
Q 008909 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (549)
Q Consensus 430 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~ 470 (549)
+.+..+ .......+.+.+++.+|++++|+|++++
T Consensus 81 ~~~~a~-------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAH-------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchh-------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 965321 0111122233467999999999999874
No 336
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.58 E-value=1.6e-14 Score=133.99 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=106.2
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCCChhhhhHH
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~~~~e~~~~ 448 (549)
..+++++|.+|+|||||++++++... .....++++.+.....+.. ++. .+.+|||||+.++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~------------ 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI------------ 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh------------
Confidence 46899999999999999999998653 3334455555554444443 444 4567999999765321
Q ss_pred HHHHHHHhcCCcEEEEEEccccCCHhHH-HHHHHHHH---hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCC
Q 008909 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (549)
Q Consensus 449 ~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~l~~l~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (549)
...+++.++++++|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+....... .......... ...
T Consensus 95 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~-----~~~a~~l~~~-~~~ 166 (191)
T 1oix_A 95 --TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP-----TDEARAFAEK-NGL 166 (191)
T ss_dssp --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHH-TTC
T ss_pred --hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC-----HHHHHHHHHH-cCC
Confidence 12256789999999999875433333 35555544 368999999999986533222 1122233332 345
Q ss_pred CEEEEccccCCCHHHHHHHHHhhh
Q 008909 525 PIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 525 ~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.++.+||+++.|++++|+.|.+.+
T Consensus 167 ~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 167 SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998754
No 337
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=5e-15 Score=148.60 Aligned_cols=170 Identities=24% Similarity=0.234 Sum_probs=101.9
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCc-----eeeecCCC---ccccc-------------------------------
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVVDEPG---VTRDR------------------------------- 201 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~-----~~~~~~~~---~t~~~------------------------------- 201 (549)
...|+|+|+|.+|+|||||+|+|+|... ..+...++ ++...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3578999999999999999999999864 22222331 11110
Q ss_pred -------------------eeee-eeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHH
Q 008909 202 -------------------MYGR-SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSM 261 (549)
Q Consensus 202 -------------------~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~ 261 (549)
..-. ....+.++.+|||||+.+.+.... -..+...
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~-------------------------~~~~~~~ 156 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQ-------------------------PTDIEQQ 156 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC----------------------------------CSHHH
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCC-------------------------chhHHHH
Confidence 0000 111346799999999965221000 0012223
Q ss_pred HHHHHHHHhhhccEEEEEEeC-CCCCCcch-HHHHHHHHHccCCCeEEEEeccCCCChhhH--HhHHHH--HHcCCCceE
Q 008909 262 IERQATAAIEESCVIIFLVDG-QAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--WSLGFSPLP 335 (549)
Q Consensus 262 i~~~~~~~i~~~d~illVvD~-~~~~~~~~-~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~--~~~~~~--~~~~~~~v~ 335 (549)
+...+..++..+|++++|+|+ ..++...+ ..+..++... +.|+++|+||+|+..... ...... ...+..+++
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 234 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE--GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIG 234 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCC--CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEE
Confidence 445677888999999999996 44555444 3566666543 789999999999875432 111111 011133444
Q ss_pred ---eeccC---CCChhhhHHHHHHHhhh
Q 008909 336 ---ISAIS---GTGTGELLDLVCSELKK 357 (549)
Q Consensus 336 ---vSA~~---g~gi~~L~~~i~~~l~~ 357 (549)
+||.+ +.|+.+++..+..+++.
T Consensus 235 v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 235 VINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 55555 78899999988887764
No 338
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=4.2e-14 Score=138.67 Aligned_cols=125 Identities=22% Similarity=0.318 Sum_probs=93.1
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
...+|+++|.+|+|||||+|++++.....+...+++|.+.....+. .++..+.||||||+.++.... .. ...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~------~~-~~~ 109 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYIN------DM-ALN 109 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEEC------HH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccch------HH-HHH
Confidence 3568999999999999999999998766677788888877666554 367789999999998754211 11 111
Q ss_pred HHHHH--HhcCCcEEEEEEccc-cCCHhHHHHHHHHHHh-C----CcEEEEEecccCCCCC
Q 008909 450 RAFRA--IRRSDVVALVIEAMA-CITEQDCRIAERIEQE-G----KGCLIVVNKWDTIPNK 502 (549)
Q Consensus 450 ~~~~~--~~~ad~~llVvD~~~-~~~~~~~~~l~~l~~~-~----~p~ivv~NK~Dl~~~~ 502 (549)
...++ .+.+|++|+|+|++. +++..+..++..+.+. + .|+++|+||+|+.+..
T Consensus 110 ~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 110 IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 11222 358999999988765 5677777888877654 3 6999999999987543
No 339
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.56 E-value=3.6e-14 Score=132.39 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc--eEEEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+++|.+|||||||+++|++..... ...+..+.....+.+.++|. .+.+|||||...+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~------------ 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT------------ 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh------------
Confidence 4689999999999999999999875321 22233344555667778775 46789999986543321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHHc-cCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivv~NK~D~~~~ 318 (549)
...+..++++++|+|.....+.... .+...+... ..+.|+++|+||+|+...
T Consensus 72 --------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 72 --------------------------SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp --------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 1345678999999998764333222 222333322 246899999999998653
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. .....+ ...++.++.+||+++.|+.++++.+.+.+..
T Consensus 126 ~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 111122 2356678899999999999999999887654
No 340
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=2.5e-15 Score=154.79 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=49.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee---------------------CC---ceEEEEEcc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------GE---HEFMLVDTG 219 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~---~~~~liDTp 219 (549)
.+|+|+|.+|||||||+|+|++.. ..++++|++|.+...+...+ ++ .++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 379999999999999999999987 77889999999888775322 22 468999999
Q ss_pred cccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC
Q 008909 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285 (549)
Q Consensus 220 G~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~ 285 (549)
|+......... +...++..+..+|++++|+|+..+
T Consensus 80 G~~~~a~~~~~-------------------------------l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRG-------------------------------LGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------------------------------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccchhhhhh-------------------------------HHHHHHHHHhcCCEEEEEEecccc
Confidence 98653211110 112233557889999999998764
No 341
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=1.2e-14 Score=156.46 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=96.8
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCcee-eecCCCccccce----eeeeee----CCceEEEEEcccccccCCCCcchh
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRM----YGRSFW----GEHEFMLVDTGGVLNVSKSQPNIM 232 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~----~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~ 232 (549)
...+|+++|.+|||||||+|+|++..... ..++.+.+.... .+.+.+ .+..+.+|||||...+.....
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--- 116 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--- 116 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH---
Confidence 35789999999999999999999875221 111111111100 001222 246799999999765443221
Q ss_pred hhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEecc
Q 008909 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (549)
Q Consensus 233 ~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK 312 (549)
..+..+|++|+|+|++.. .....+...+.....+.|+++|+||
T Consensus 117 -----------------------------------~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK 159 (535)
T 3dpu_A 117 -----------------------------------FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNK 159 (535)
T ss_dssp -----------------------------------HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECC
T ss_pred -----------------------------------HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEEC
Confidence 345679999999998753 3334456666665457999999999
Q ss_pred CCCChhhHHh---HHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 313 CESPRKGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 313 ~D~~~~~~~~---~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+|+....... ... ....+.+++++||++|.|+++++..+.+.+..
T Consensus 160 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 160 IDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred CCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 9987543211 111 12346679999999999999999999887654
No 342
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.55 E-value=3e-15 Score=157.67 Aligned_cols=145 Identities=23% Similarity=0.241 Sum_probs=99.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee------------------------e------ecCCCccccceeeeeeeCCce
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------V------VDEPGVTRDRMYGRSFWGEHE 212 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~------------------------~------~~~~~~t~~~~~~~~~~~~~~ 212 (549)
.++|+++|++|+|||||+|+|++..... + ....|+|.+.....+...+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4689999999999999999998541000 0 112577877777777778889
Q ss_pred EEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCc----
Q 008909 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA---- 288 (549)
Q Consensus 213 ~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~---- 288 (549)
+.+|||||+.++ ......++..+|++|+|+|++.+...
T Consensus 87 ~~iiDtPGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~ 128 (458)
T 1f60_A 87 VTVIDAPGHRDF--------------------------------------IKNMITGTSQADCAILIIAGGVGEFEAGIS 128 (458)
T ss_dssp EEEEECCCCTTH--------------------------------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTC
T ss_pred EEEEECCCcHHH--------------------------------------HHHHHhhhhhCCEEEEEEeCCcCccccccC
Confidence 999999998642 12345677889999999999865322
Q ss_pred ---chHHHHHHHHHccCCCe-EEEEeccCCCCh--hhH-Hh----HHHH-HHcC-----CCceEeeccCCCChhhh
Q 008909 289 ---ADEEIADWLRKNYMDKF-IILAVNKCESPR--KGI-MQ----VSEF-WSLG-----FSPLPISAISGTGTGEL 347 (549)
Q Consensus 289 ---~~~~~~~~l~~~~~~~p-~ivv~NK~D~~~--~~~-~~----~~~~-~~~~-----~~~v~vSA~~g~gi~~L 347 (549)
+..+++..+... +.| +++|+||+|+.. ... .. ...+ ...+ .+++++||++|.|+.++
T Consensus 129 ~~~qt~~~~~~~~~~--~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 129 KDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cchhHHHHHHHHHHc--CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 444554444433 554 899999999973 211 11 1111 1223 57999999999998754
No 343
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.55 E-value=1.4e-14 Score=148.18 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=106.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC----------------------------------------------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS---------------------------------------------- 403 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~---------------------------------------------- 403 (549)
..+.|+++|.+|+||||++|+++|..........
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4569999999999999999999996543222111
Q ss_pred -------CceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc--CCHh
Q 008909 404 -------GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC--ITEQ 474 (549)
Q Consensus 404 -------gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~--~~~~ 474 (549)
+...+.+...+.......+.+|||||+.++..... ...........+..+++.+|++|+|+|++.. .+..
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q-~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQ-SDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTC-CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCC-chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 01111112222223355799999999987532111 1223344455667788999999999987542 2334
Q ss_pred HHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHH
Q 008909 475 DCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLY 543 (549)
Q Consensus 475 ~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~ 543 (549)
...+++.+...+.|+|+|+||+|+....... ...+ +......+.+++++|++++.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~-----~~~~-~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDA-----VEIL-EGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCS-----HHHH-TTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccH-----HHHH-cCccccccCCeEEEEECChHHhccCCCH
Confidence 4556666666789999999999998654321 1111 1122234468999999999888876544
No 344
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.55 E-value=2.1e-14 Score=153.25 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=84.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee---------------e------ecCCCccccceeeeeeeCCceEEEEEcccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI---------------V------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~~~liDTpG~ 221 (549)
..+|+|+|++|+|||||+++|++..... + ....|+|.......+.+.+..+.+|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 4689999999999999999998532111 1 123455666666667788899999999999
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~ 301 (549)
.++.. .+.+++..+|++|+|+|+..+...+...+...+...
T Consensus 93 ~df~~--------------------------------------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~- 133 (529)
T 2h5e_A 93 EDFSE--------------------------------------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR- 133 (529)
T ss_dssp TTCCH--------------------------------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-
T ss_pred hhHHH--------------------------------------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc-
Confidence 76431 344678899999999999988877766666666544
Q ss_pred CCCeEEEEeccCCCCh
Q 008909 302 MDKFIILAVNKCESPR 317 (549)
Q Consensus 302 ~~~p~ivv~NK~D~~~ 317 (549)
+.|+++++||+|+..
T Consensus 134 -~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 134 -DTPILTFMNKLDRDI 148 (529)
T ss_dssp -TCCEEEEEECTTSCC
T ss_pred -CCCEEEEEcCcCCcc
Confidence 789999999999754
No 345
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.55 E-value=1.7e-14 Score=154.61 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=89.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCC---------------------CceeeecCCCccccceeeeeeeCCceEEEEEcccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGG---------------------NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~---------------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~ 221 (549)
..+|+|+||.++|||||..+|+.. .........|+|.......+.|++..+.||||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 457999999999999999998521 11122334577888888888999999999999999
Q ss_pred cccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHcc
Q 008909 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (549)
Q Consensus 222 ~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~ 301 (549)
.+|.. .+.+.+..+|.+|+|+|+..+...+...+++.+.+.
T Consensus 111 vDF~~--------------------------------------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~- 151 (548)
T 3vqt_A 111 QDFSE--------------------------------------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR- 151 (548)
T ss_dssp GGCSH--------------------------------------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-
T ss_pred HHHHH--------------------------------------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh-
Confidence 98643 455888999999999999999999999988888776
Q ss_pred CCCeEEEEeccCCCC
Q 008909 302 MDKFIILAVNKCESP 316 (549)
Q Consensus 302 ~~~p~ivv~NK~D~~ 316 (549)
+.|+++++||+|..
T Consensus 152 -~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 152 -ATPVMTFVNKMDRE 165 (548)
T ss_dssp -TCCEEEEEECTTSC
T ss_pred -CCceEEEEecccch
Confidence 89999999999964
No 346
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=2.2e-14 Score=140.73 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=91.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|.+|+|||||+|+|++.....+++.+++|.......+...+..+.+|||||+.++......+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~---------- 108 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMAL---------- 108 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHH----------
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHH----------
Confidence 5689999999999999999999987666778888888887777788889999999999987543221110
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHH--hhhccEEEEEEeCCC-CCCcchHHHHHHHHHccCC---CeEEEEeccCCCC
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQA-GLTAADEEIADWLRKNYMD---KFIILAVNKCESP 316 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~--i~~~d~illVvD~~~-~~~~~~~~~~~~l~~~~~~---~p~ivv~NK~D~~ 316 (549)
+.+.++ ...+|++|+|+|... .+...+..+...+...+.. .|+++|+||+|+.
T Consensus 109 ---------------------~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 109 ---------------------NIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp ---------------------HHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred ---------------------HHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 111122 236899999987654 3444555666666543222 6999999999987
Q ss_pred hhh
Q 008909 317 RKG 319 (549)
Q Consensus 317 ~~~ 319 (549)
+..
T Consensus 168 ~~~ 170 (270)
T 1h65_A 168 PPD 170 (270)
T ss_dssp CGG
T ss_pred CcC
Confidence 543
No 347
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=2e-14 Score=140.37 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~ 242 (549)
.++|+++|++|+|||||+|+|++.....+...+++|.......+.+++..+.+|||||+.++....+.+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~---------- 105 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQAL---------- 105 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHH----------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHH----------
Confidence 5789999999999999999999988667788889999888888889999999999999987644322111
Q ss_pred ccCCchhhHHHHHhhchHHHHHHHHHHh--hhccEEEEEEeCCC-CCCcchHHHHHHHHHccC---CCeEEEEeccCCCC
Q 008909 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYM---DKFIILAVNKCESP 316 (549)
Q Consensus 243 ~~Gi~~~~~~~~i~~~~~~i~~~~~~~i--~~~d~illVvD~~~-~~~~~~~~~~~~l~~~~~---~~p~ivv~NK~D~~ 316 (549)
+.+.+.+ ..+|++|+|++... .+...+..++..+..... ..|+++|+||+|+.
T Consensus 106 ---------------------~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 106 ---------------------ELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ---------------------HHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ---------------------HHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 1111222 36899999987654 344445566666665322 24899999999986
Q ss_pred h
Q 008909 317 R 317 (549)
Q Consensus 317 ~ 317 (549)
+
T Consensus 165 ~ 165 (262)
T 3def_A 165 P 165 (262)
T ss_dssp C
T ss_pred C
Confidence 4
No 348
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=6.3e-15 Score=162.61 Aligned_cols=158 Identities=16% Similarity=0.239 Sum_probs=106.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcc--------------cccee------------------------
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT--------------RDRMY------------------------ 203 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t--------------~~~~~------------------------ 203 (549)
..++|+|+|.+|+|||||+|+|+|.....++..|++. .....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 3678999999999999999999998866666666652 11100
Q ss_pred ---------------eeeeeCC----ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHH
Q 008909 204 ---------------GRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIER 264 (549)
Q Consensus 204 ---------------~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~ 264 (549)
..+.+.. .++.+|||||+.+.... ..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~-----------------------------------~~ 192 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEAR-----------------------------------NE 192 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTC-----------------------------------HH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhH-----------------------------------HH
Confidence 0000000 46899999998653210 12
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCcchHHHHH-HHHHccCCCeEEEEeccCCCChhh---------HH----hHH----HH
Q 008909 265 QATAAIEESCVIIFLVDGQAGLTAADEEIAD-WLRKNYMDKFIILAVNKCESPRKG---------IM----QVS----EF 326 (549)
Q Consensus 265 ~~~~~i~~~d~illVvD~~~~~~~~~~~~~~-~l~~~~~~~p~ivv~NK~D~~~~~---------~~----~~~----~~ 326 (549)
.+..++..+|++|+|+|++.+.+..+...+. .+... +.|+++|+||+|+.... .. ... ..
T Consensus 193 ~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~ 270 (695)
T 2j69_A 193 LSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNAN 270 (695)
T ss_dssp HHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999998887766654432 33322 67899999999986542 00 010 11
Q ss_pred HH----------cCCCceEeecc--------------CCCChhhhHHHHHHHhh
Q 008909 327 WS----------LGFSPLPISAI--------------SGTGTGELLDLVCSELK 356 (549)
Q Consensus 327 ~~----------~~~~~v~vSA~--------------~g~gi~~L~~~i~~~l~ 356 (549)
.. ...+++++||+ ++.|+.+++..+...+.
T Consensus 271 l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 271 LAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 11 11368999999 99999999988877654
No 349
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.54 E-value=4.5e-15 Score=156.69 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=89.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCce------------------------ee------ecCCCccccceeeeeeeCCce
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRA------------------------IV------VDEPGVTRDRMYGRSFWGEHE 212 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~------------------------~~------~~~~~~t~~~~~~~~~~~~~~ 212 (549)
.++|+++|++|+|||||+++|++.... .+ ....|+|.+.....+.+++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 468999999999999999999742110 01 113467777766677778899
Q ss_pred EEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC------
Q 008909 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------ 286 (549)
Q Consensus 213 ~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~------ 286 (549)
+.+|||||+.++.. ....++..+|++|+|+|++.+.
T Consensus 123 ~~iiDtPGh~~f~~--------------------------------------~~~~~~~~aD~~ilVvDa~~g~~e~sf~ 164 (467)
T 1r5b_A 123 FSLLDAPGHKGYVT--------------------------------------NMINGASQADIGVLVISARRGEFEAGFE 164 (467)
T ss_dssp EEECCCCC-------------------------------------------------TTSCSEEEEEEECSTTHHHHTTS
T ss_pred EEEEECCCcHHHHH--------------------------------------HHHhhcccCCEEEEEEeCCcCccccccC
Confidence 99999999976432 2235678899999999998864
Q ss_pred -CcchHHHHHHHHHccCCCe-EEEEeccCCCChh----h-HH----hHHHHH-Hc-C------CCceEeeccCCCChhhh
Q 008909 287 -TAADEEIADWLRKNYMDKF-IILAVNKCESPRK----G-IM----QVSEFW-SL-G------FSPLPISAISGTGTGEL 347 (549)
Q Consensus 287 -~~~~~~~~~~l~~~~~~~p-~ivv~NK~D~~~~----~-~~----~~~~~~-~~-~------~~~v~vSA~~g~gi~~L 347 (549)
..+..+++..+... +.| +++|+||+|+... . .. +...+. .. + ++++++||++|.|+.++
T Consensus 165 ~~~qt~e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 165 RGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred CCCcHHHHHHHHHHc--CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 24555555555443 676 9999999999541 1 11 111222 22 3 45899999999999875
Q ss_pred H
Q 008909 348 L 348 (549)
Q Consensus 348 ~ 348 (549)
+
T Consensus 243 ~ 243 (467)
T 1r5b_A 243 V 243 (467)
T ss_dssp C
T ss_pred c
Confidence 4
No 350
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=5.5e-14 Score=155.82 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=89.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe-----ee------------cCCCCceeeeeEEEEecc------CCCeEEEEe
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IV------------SPISGTTRDAIDTEFTGP------EGQKFRLID 426 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~-----~~------------~~~~gtt~~~~~~~~~~~------~~~~i~l~D 426 (549)
+.++|+++|+..+|||||..+|+..... .+ .-.-|+|+......+.+. ++..|+|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4579999999999999999999732111 00 112266766655555432 246899999
Q ss_pred CCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCC
Q 008909 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNK 502 (549)
Q Consensus 427 TpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~ 502 (549)
||||.+|.. ++.++++.+|++|+|||+..++..+...+|+++.+.++|.++++||+|+....
T Consensus 92 TPGHvDF~~--------------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 92 TPGHVDFTI--------------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCSCTTCHH--------------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCC
T ss_pred CCCCcccHH--------------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCcc
Confidence 999999843 46678999999999999999999999999999999999999999999986543
No 351
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.53 E-value=1.9e-14 Score=161.72 Aligned_cols=155 Identities=18% Similarity=0.137 Sum_probs=106.8
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCc-----e----------eeecCCCccccceeeeeeeCCceEEEEEcccccccCC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----A----------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~-----~----------~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~ 226 (549)
...+|+++|++|+|||||+++|++... . ......|+|.+.....+...+..+.+|||||+.++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~- 373 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV- 373 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH-
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH-
Confidence 357899999999999999999986310 0 111245667666554555567899999999997531
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe-
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (549)
.....++..+|++|+|+|++.+...+..+++..+... +.|
T Consensus 374 -------------------------------------~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~ 414 (1289)
T 3avx_A 374 -------------------------------------KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPY 414 (1289)
T ss_dssp -------------------------------------HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSC
T ss_pred -------------------------------------HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCe
Confidence 2344677889999999999998888887777766654 677
Q ss_pred EEEEeccCCCChh-hHH-----hHHHHH-HcC-----CCceEeeccCC--------CChhhhHHHHHHHhh
Q 008909 306 IILAVNKCESPRK-GIM-----QVSEFW-SLG-----FSPLPISAISG--------TGTGELLDLVCSELK 356 (549)
Q Consensus 306 ~ivv~NK~D~~~~-~~~-----~~~~~~-~~~-----~~~v~vSA~~g--------~gi~~L~~~i~~~l~ 356 (549)
+++|+||+|+... ... +...+. ..+ .+++++||++| .|+.+|++.+...++
T Consensus 415 IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 415 IIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred EEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 7899999999742 211 111222 223 57899999999 468888888877664
No 352
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.53 E-value=7.9e-14 Score=143.89 Aligned_cols=162 Identities=22% Similarity=0.251 Sum_probs=113.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhhHHH
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~ 449 (549)
....++++|.+|+|||||++.+++.. ..+...+++|.......+...+...+.++||||+.+..... .. ...
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~---~~----L~~ 227 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG---KG----LGL 227 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS---CC----SCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhh---hh----hhH
Confidence 34579999999999999999999875 45677788887776666654334789999999996532110 00 112
Q ss_pred HHHHHHhcCCcEEEEEEccccCCHhHHH-HHHHHHH-----hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCC
Q 008909 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (549)
Q Consensus 450 ~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l~~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (549)
..++.+..++.+++|+|++ .-...+.. +.+++.. ...|.++|+||+|+... . ....+.+.+... +
T Consensus 228 ~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~----~~~~l~~~l~~~-g 298 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---E----AVKALADALARE-G 298 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---H----HHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---H----HHHHHHHHHHhc-C
Confidence 2455678899999999997 22222332 3333333 26899999999998653 1 133444555433 4
Q ss_pred CCEEEEccccCCCHHHHHHHHHhhh
Q 008909 524 APIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 524 ~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+++++||+++.|+++|++.|.+.+
T Consensus 299 ~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 299 LAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCccCHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 353
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.53 E-value=1.1e-14 Score=152.51 Aligned_cols=146 Identities=24% Similarity=0.259 Sum_probs=95.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceee------------------------------ecCCCccccceeeeeeeCCce
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWGEHE 212 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~ 212 (549)
..+|+++|++|+|||||+++|++...... ....++|.+.....+...+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 46899999999999999999985411110 113567777776677778889
Q ss_pred EEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCC-------
Q 008909 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------- 285 (549)
Q Consensus 213 ~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~------- 285 (549)
+.+|||||+.++. .....++..+|++|+|+|++.+
T Consensus 86 ~~iiDtpG~~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~ 127 (435)
T 1jny_A 86 FTIIDAPGHRDFV--------------------------------------KNMITGASQADAAILVVSAKKGEYEAGMS 127 (435)
T ss_dssp EEECCCSSSTTHH--------------------------------------HHHHHTSSCCSEEEEEEECSTTHHHHHHS
T ss_pred EEEEECCCcHHHH--------------------------------------HHHHhhhhhcCEEEEEEECCCCccccccc
Confidence 9999999987632 2344677889999999999886
Q ss_pred CCcchHHHHHHHHHccCCCeEEEEeccCCCChh----hH-----HhHHHHH-HcC-----CCceEeeccCCCChhhh
Q 008909 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRK----GI-----MQVSEFW-SLG-----FSPLPISAISGTGTGEL 347 (549)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~----~~-----~~~~~~~-~~~-----~~~v~vSA~~g~gi~~L 347 (549)
...+..++...+... ...++++++||+|+... .. .+...+. ..+ .+++++||++|.|+.++
T Consensus 128 ~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 128 VEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cchHHHHHHHHHHHc-CCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 455555555555443 12468999999998762 11 1111222 223 46899999999999754
No 354
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=146.89 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=90.4
Q ss_pred CCCCCeEEEEcCCCCchhhHHHhhhCC------CceeeecCC-------------------------------------C
Q 008909 160 EHLLPRVAIVGRPNVGKSALFNRLVGG------NRAIVVDEP-------------------------------------G 196 (549)
Q Consensus 160 ~~~~~~I~i~G~~~~GKSsl~n~l~~~------~~~~~~~~~-------------------------------------~ 196 (549)
....++|+|+|+||||||||+|+|++. +.......+ |
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC--------
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 345789999999999999999999852 222222211 1
Q ss_pred ccccceeee--eeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhcc
Q 008909 197 VTRDRMYGR--SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESC 274 (549)
Q Consensus 197 ~t~~~~~~~--~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d 274 (549)
+|....... +...+.++.++||||+... . ......+|
T Consensus 151 ~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~----~-------------------------------------~~l~~~~d 189 (349)
T 2www_A 151 VTRTTNEAILLCEGAGYDIILIETVGVGQS----E-------------------------------------FAVADMVD 189 (349)
T ss_dssp -CTTHHHHHHHHHHTTCSEEEEECCCC--C----H-------------------------------------HHHHTTCS
T ss_pred chHHHHHHHHhhccCCCCEEEEECCCcchh----h-------------------------------------hhHHhhCC
Confidence 222211111 1236778999999997421 0 02246789
Q ss_pred EEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHH--hHHHH---HH--------cCCCceEeeccCC
Q 008909 275 VIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSEF---WS--------LGFSPLPISAISG 341 (549)
Q Consensus 275 ~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~--~~~~~---~~--------~~~~~v~vSA~~g 341 (549)
++++|+|+..+...+ . +.......|.++|+||+|+.+.... ....+ .. ...+++++||++|
T Consensus 190 ~vl~V~d~~~~~~~~--~----i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g 263 (349)
T 2www_A 190 MFVLLLPPAGGDELQ--G----IKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSG 263 (349)
T ss_dssp EEEEEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTC
T ss_pred EEEEEEcCCcchhHH--H----hHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCC
Confidence 999999987643211 1 1111125688999999998753211 11111 11 1235789999999
Q ss_pred CChhhhHHHHHHHhhh
Q 008909 342 TGTGELLDLVCSELKK 357 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~ 357 (549)
.|+.++++++...+..
T Consensus 264 ~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 264 EGISEMWDKMKDFQDL 279 (349)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999876643
No 355
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.52 E-value=2.7e-14 Score=157.46 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCce-----------eeec------CCCccccceeeeeeeCCceEEEEEcccccc
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~-----------~~~~------~~~~t~~~~~~~~~~~~~~~~liDTpG~~~ 223 (549)
...++|+|+|++|+|||||+|+|++.... .+.+ .+++|.......+.+.+..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 34678999999999999999999842111 1111 356777777777888899999999999976
Q ss_pred cCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCC
Q 008909 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (549)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (549)
+.. .+.+++..+|++|+|+|+..+...++..++..+... +
T Consensus 88 f~~--------------------------------------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~--~ 127 (693)
T 2xex_A 88 FTV--------------------------------------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY--G 127 (693)
T ss_dssp CCH--------------------------------------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT--T
T ss_pred hHH--------------------------------------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc--C
Confidence 321 344677889999999999988888877777766665 8
Q ss_pred CeEEEEeccCCCCh
Q 008909 304 KFIILAVNKCESPR 317 (549)
Q Consensus 304 ~p~ivv~NK~D~~~ 317 (549)
.|+++|+||+|+..
T Consensus 128 ~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 128 VPRIVFVNKMDKLG 141 (693)
T ss_dssp CCEEEEEECTTSTT
T ss_pred CCEEEEEECCCccc
Confidence 89999999999864
No 356
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=145.47 Aligned_cols=169 Identities=16% Similarity=0.147 Sum_probs=83.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCC--------CCceeeeeEEEEeccCCC--eEEEEeCCCccchhhhccCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPI--------SGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSG 440 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~--------~gtt~~~~~~~~~~~~~~--~i~l~DTpG~~~~~~~~~~~ 440 (549)
..+|+++|.+|+|||||+|+|++...+..... ++++.+.....+. .++. .+.+|||||+.++..-....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~-~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE-ERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC--------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEee-cCCcccceEEEEeccccccCccHHHH
Confidence 45899999999999999999987655443322 2333332222222 1232 68999999995432100000
Q ss_pred ChhhhhHHHHHHHHHhc-------------CCcEEEEEEc-cccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhh
Q 008909 441 STTEALSVNRAFRAIRR-------------SDVVALVIEA-MACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQT 506 (549)
Q Consensus 441 ~~~e~~~~~~~~~~~~~-------------ad~~llVvD~-~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~ 506 (549)
...-.+.......+++. +|+++|+++. .+++...+..+++.+. .++|+|+|+||+|+......
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev-- 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKER-- 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHH--
Confidence 01111111111123332 2467777775 5667777777777664 57999999999999764322
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 507 ATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
..+...+.+.+... +.+++++||++|.| ++.|..+.+
T Consensus 193 -~~~k~~i~~~~~~~-~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 193 -ERLKKRILDEIEEH-NIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp -HHHHHHHHHHTTCC--CCSCCCC----------CHHHHH
T ss_pred -HHHHHHHHHHHHHC-CCCEEeCCCcCCCc-chhHHHHHH
Confidence 22234555666554 46999999999988 666655544
No 357
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.51 E-value=8.1e-14 Score=140.67 Aligned_cols=91 Identities=25% Similarity=0.296 Sum_probs=64.7
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC----------------CCeEEEEeCCCccchh
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRKRA 434 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~----------------~~~i~l~DTpG~~~~~ 434 (549)
..+++++|.+|+|||||+|++++.. +.+.+.|++|++.....+...+ +..+.+|||||+.++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 4579999999999999999999876 6778889999887665555433 1579999999997653
Q ss_pred hhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc
Q 008909 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (549)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~ 469 (549)
+. ........+.+++.+|++++|+|+++
T Consensus 81 ~~-------~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SK-------GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HH-------HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cc-------cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 21 11112234567899999999999986
No 358
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.51 E-value=1.7e-13 Score=128.71 Aligned_cols=167 Identities=18% Similarity=0.201 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCC-ceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~ 239 (549)
....+|+|+|++|+|||||+|+|+|.. ...+.+.+|+|.... .+.+++ .+.++||||+........ .
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~-~-------- 91 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEE-M-------- 91 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------C-C--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHH-H--------
Confidence 445689999999999999999999875 334456667766533 233434 688999999854211000 0
Q ss_pred cccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 240 ~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
.. .+...+ .........++.+++|+|+..+....+..+..++... +.|++++.||+|+....
T Consensus 92 -----------~~----~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 92 -----------KR----KWQRAL-GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS--NIAVLVLLTKADKLASG 153 (210)
T ss_dssp -----------HH----HHHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCHH
T ss_pred -----------HH----HHHHHH-HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEecccCCCch
Confidence 00 000011 1122223568999999999887665555566666544 78999999999987543
Q ss_pred HHh-----HHHHHH-c--CCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 320 IMQ-----VSEFWS-L--GFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 320 ~~~-----~~~~~~-~--~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
..+ ...+.. . .+..+++||+++.|+.++++.+.+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 154 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 211 111221 2 2356899999999999999998876643
No 359
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.51 E-value=5.7e-14 Score=154.86 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce-----------eeec------CCCccccceeeeeeeCCceEEEEEccccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~-----------~~~~------~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~ 224 (549)
..++|+|+|++|+|||||+++|+..... .+.+ ..+.|.......+.+.+..+.+|||||+.++
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 3578999999999999999999832100 0111 3466767667777888899999999999653
Q ss_pred CCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCC
Q 008909 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (549)
Q Consensus 225 ~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (549)
. ..+.+++..+|++|+|+|+..+...+....+..+... +.
T Consensus 91 ~--------------------------------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~--~~ 130 (691)
T 1dar_A 91 T--------------------------------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--KV 130 (691)
T ss_dssp H--------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TC
T ss_pred H--------------------------------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc--CC
Confidence 2 2345677889999999999998888777776666654 89
Q ss_pred eEEEEeccCCCCh
Q 008909 305 FIILAVNKCESPR 317 (549)
Q Consensus 305 p~ivv~NK~D~~~ 317 (549)
|+++|+||+|+..
T Consensus 131 p~ivviNKiD~~~ 143 (691)
T 1dar_A 131 PRIAFANKMDKTG 143 (691)
T ss_dssp CEEEEEECTTSTT
T ss_pred CEEEEEECCCccc
Confidence 9999999999764
No 360
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=138.06 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=57.2
Q ss_pred hccEEEEEEeCCCC--CCcchH-HHHHHHHHc--cCCCeEEEEeccCCCChhhHHh-HHHHHH--cCCCceEeeccCCCC
Q 008909 272 ESCVIIFLVDGQAG--LTAADE-EIADWLRKN--YMDKFIILAVNKCESPRKGIMQ-VSEFWS--LGFSPLPISAISGTG 343 (549)
Q Consensus 272 ~~d~illVvD~~~~--~~~~~~-~~~~~l~~~--~~~~p~ivv~NK~D~~~~~~~~-~~~~~~--~~~~~v~vSA~~g~g 343 (549)
++|++|+|+|++.+ .+.... .++..+... ..+.|+++|+||+|+....... ...+.. .+++++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 68999999999875 443322 222223221 2478999999999986543322 222332 367899999999999
Q ss_pred hhhhHHHHHHHh
Q 008909 344 TGELLDLVCSEL 355 (549)
Q Consensus 344 i~~L~~~i~~~l 355 (549)
+.++++.+.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987765
No 361
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.50 E-value=2.2e-13 Score=140.49 Aligned_cols=163 Identities=20% Similarity=0.337 Sum_probs=113.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC-ceEEEEEcccccccCCCCcchhhhhhhhhcc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~ 241 (549)
...|+|+|++|||||||+++|++.. ..+..++++|.....+.+.+++ ..+.++||||+........
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~------------ 223 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK------------ 223 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhh------------
Confidence 4689999999999999999999875 4677888999888888888876 7899999999865211000
Q ss_pred cccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHH-HHHHHHH---ccCCCeEEEEeccCCCCh
Q 008909 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRK---NYMDKFIILAVNKCESPR 317 (549)
Q Consensus 242 ~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~-~~~~l~~---~~~~~p~ivv~NK~D~~~ 317 (549)
++ ...+.+.+..++.+++|+|++ ........ ..+.+.. .+...|.++++||+|+..
T Consensus 224 ---~L----------------~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 224 ---GL----------------GLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp ---CS----------------CHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ---hh----------------hHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 00 012335567899999999986 11111111 1111111 123689999999999876
Q ss_pred hhHHh-HHHHH-HcCCCceEeeccCCCChhhhHHHHHHHhhhh
Q 008909 318 KGIMQ-VSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (549)
Q Consensus 318 ~~~~~-~~~~~-~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~~ 358 (549)
..... ..... ..+.+++.+||+++.|+++|++.+.+.+...
T Consensus 284 ~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 284 EEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 52222 12222 3467899999999999999999999888653
No 362
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.50 E-value=1.1e-13 Score=152.76 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCce-----------eeec------CCCccccceeeeeeeCC-------ceEEEE
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVD------EPGVTRDRMYGRSFWGE-------HEFMLV 216 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~-----------~~~~------~~~~t~~~~~~~~~~~~-------~~~~li 216 (549)
...++|+|+|+.|+|||||+++|+..... ...+ ..++|.......+.+.+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 34688999999999999999999743111 1111 23555555555566666 789999
Q ss_pred EcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHH
Q 008909 217 DTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADW 296 (549)
Q Consensus 217 DTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~ 296 (549)
||||+.++. ..+.+++..+|.+|+|+|+..+...+...++..
T Consensus 88 DTPG~~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~ 129 (704)
T 2rdo_7 88 DTPGHVDFT--------------------------------------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ 129 (704)
T ss_pred eCCCccchH--------------------------------------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH
Confidence 999997632 134467788999999999998877777666666
Q ss_pred HHHccCCCeEEEEeccCCCCh
Q 008909 297 LRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 297 l~~~~~~~p~ivv~NK~D~~~ 317 (549)
+... +.|+++++||+|+..
T Consensus 130 ~~~~--~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 130 ANKY--KVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHc--CCCEEEEEeCCCccc
Confidence 5544 789999999999754
No 363
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.50 E-value=2.5e-13 Score=125.90 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceE--EEEEcccccccCCCCcchhhhhhhhhc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEF--MLVDTGGVLNVSKSQPNIMEDLAITTT 240 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~~~~i~~~~~ 240 (549)
..+|+|+|.+|||||||+++|++.... ....+..+.+...+.+.++|..+ .+|||||...+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~------------ 95 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT------------ 95 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh------------
Confidence 478999999999999999999987532 22334444455567778888654 569999987543321
Q ss_pred ccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH-HHHHHHHH-ccCCCeEEEEeccCCCChh
Q 008909 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (549)
Q Consensus 241 ~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivv~NK~D~~~~ 318 (549)
...+..++.+++|+|.....+.... .+...+.. ...+.|+++++||+|+...
T Consensus 96 --------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 96 --------------------------SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp --------------------------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 1345678899999997653222221 12222332 2246899999999998643
Q ss_pred hH---HhHHHH-HHcCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 319 ~~---~~~~~~-~~~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.. .....+ ...++.++.+||+++.|+.++++.+.+.+
T Consensus 150 ~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 21 111122 23466788999999999999999887643
No 364
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.49 E-value=5.4e-14 Score=142.74 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=90.9
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcC------CCeeecCCC-------------------------------------Cce
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTIVSPIS-------------------------------------GTT 406 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~------~~~~~~~~~-------------------------------------gtt 406 (549)
....|+++|.+|+|||||+|++++. +.......| |+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3678999999999999999999862 111111111 222
Q ss_pred eeeeEEEEe-ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh
Q 008909 407 RDAIDTEFT-GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE 485 (549)
Q Consensus 407 ~~~~~~~~~-~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~ 485 (549)
++....... ...+..+.++||||+... + ......+|++++|+|++.+...+... ..+ .
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~-------~~l~~~~d~vl~V~d~~~~~~~~~i~--~~i--l 211 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS----------E-------FAVADMVDMFVLLLPPAGGDELQGIK--RGI--I 211 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C----------H-------HHHHTTCSEEEEEECCC----------------C
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh----------h-------hhHHhhCCEEEEEEcCCcchhHHHhH--HHH--H
Confidence 221110000 125678999999998431 0 11357899999999998653222111 111 3
Q ss_pred CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC------CCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 486 GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL------DWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 486 ~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~------~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..|.++|+||+|+...... ......+...+... ..++++++||++|.|+++|+++|.+.+
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPA---RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CSCSEEEECCCSGGGHHHH---HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhH---HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 5688999999998642111 11122333333221 245789999999999999999998753
No 365
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.49 E-value=2.3e-13 Score=135.34 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=91.9
Q ss_pred HHhhhccEEEEEEeCCCCCC-cch-HHHHHHHHHccCCCeEEEEeccCCCChhhHHh-HHHHH-HcC--CCceEeeccCC
Q 008909 268 AAIEESCVIIFLVDGQAGLT-AAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFW-SLG--FSPLPISAISG 341 (549)
Q Consensus 268 ~~i~~~d~illVvD~~~~~~-~~~-~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~-~~~~~-~~~--~~~v~vSA~~g 341 (549)
.+++++|++|+|+|++.+.. ... ..++..+.. .+.|+++|+||+|+.+..... ...+. ..+ ++++++||++|
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCC
Confidence 45788999999999987653 221 122222333 379999999999997643211 11111 123 68999999999
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-------CceeeeeEEEE
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEF 414 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~-------gtt~~~~~~~~ 414 (549)
.|+++++..+. ...++++|.+|+|||||+|.+++.......... ++|+.... .
T Consensus 158 ~gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~ 217 (301)
T 1u0l_A 158 MGIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--L 217 (301)
T ss_dssp TTHHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--E
T ss_pred cCHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--E
Confidence 99999887652 236799999999999999999986544333222 23332211 1
Q ss_pred eccCCCeEEEEeCCCccchh
Q 008909 415 TGPEGQKFRLIDTAGIRKRA 434 (549)
Q Consensus 415 ~~~~~~~i~l~DTpG~~~~~ 434 (549)
.. . ....++||||+..+.
T Consensus 218 ~~-~-~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 218 KF-D-FGGYVVDTPGFANLE 235 (301)
T ss_dssp EC-T-TSCEEESSCSSTTCC
T ss_pred Ec-C-CCCEEEECcCCCccC
Confidence 11 1 224789999986543
No 366
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.48 E-value=1.3e-13 Score=151.07 Aligned_cols=164 Identities=22% Similarity=0.279 Sum_probs=105.4
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcccc-----------------------------------------
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD----------------------------------------- 200 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~----------------------------------------- 200 (549)
..|+|+++|.+|+|||||+|+|+|......+.. .+|+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 489999999999999999999999764322221 22211
Q ss_pred ----------ceeeeeee-CCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHH
Q 008909 201 ----------RMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA 269 (549)
Q Consensus 201 ----------~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~ 269 (549)
...-.+.. +..++.+|||||+.......+ |. .+. ..+...+..+
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~q-----------------p~-di~-------~~i~~lv~~y 183 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQ-----------------PP-DIE-------FQIRDMLMQF 183 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCC-----------------CC-HHH-------HHHHHHHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCC-----------------cH-HHH-------HHHHHHHHHH
Confidence 11111111 235689999999976321110 00 000 1122233344
Q ss_pred h-hhccEEEEEEeCCCCCCcchH-HHHHHHHHccCCCeEEEEeccCCCChhhHHhH--HH--HHH--cCC-CceEeeccC
Q 008909 270 I-EESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQV--SE--FWS--LGF-SPLPISAIS 340 (549)
Q Consensus 270 i-~~~d~illVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~--~~--~~~--~~~-~~v~vSA~~ 340 (549)
+ ..+|++++|+|++.++...+. .+...+... +.|+++|+||+|+.+...... .. ... .++ +++++||++
T Consensus 184 i~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~ 261 (772)
T 3zvr_A 184 VTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKD 261 (772)
T ss_dssp HTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEE
T ss_pred HhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccc
Confidence 4 568999999999988877776 566766654 789999999999976432111 11 000 122 578999999
Q ss_pred CCChhhhHHHHHH
Q 008909 341 GTGTGELLDLVCS 353 (549)
Q Consensus 341 g~gi~~L~~~i~~ 353 (549)
|.|+++|++.+..
T Consensus 262 G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 262 IDGKKDITAALAA 274 (772)
T ss_dssp SSSSEEHHHHHHH
T ss_pred cccchhHHHHHHH
Confidence 9999999988876
No 367
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.48 E-value=6.2e-14 Score=142.88 Aligned_cols=165 Identities=21% Similarity=0.281 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCce-----eeecCCC----------------------ccccc-----------e-
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRDR-----------M- 202 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~-----~~~~~~~----------------------~t~~~-----------~- 202 (549)
..++|+++|.+|||||||+|+|+|.... .+...|+ +|.+. .
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999997643 2222333 22210 0
Q ss_pred -----------eeeee-eCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHh
Q 008909 203 -----------YGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAI 270 (549)
Q Consensus 203 -----------~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i 270 (549)
.-.+. .++.++.+|||||+.+.....+ +. .....+...+..++
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~-----------------~~--------~~~~~~~~~~~~~~ 164 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQ-----------------PP--------DIEFQIRDMLMQFV 164 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTC-----------------CT--------THHHHHHHHHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCC-----------------ch--------hHHHHHHHHHHHHH
Confidence 00001 1246799999999975322110 00 00011223344455
Q ss_pred hh-ccEEEEEEeCCCCCCcchHH-HHHHHHHccCCCeEEEEeccCCCChhhH--HhHHHHH--H--cCC-CceEeeccCC
Q 008909 271 EE-SCVIIFLVDGQAGLTAADEE-IADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEFW--S--LGF-SPLPISAISG 341 (549)
Q Consensus 271 ~~-~d~illVvD~~~~~~~~~~~-~~~~l~~~~~~~p~ivv~NK~D~~~~~~--~~~~~~~--~--~~~-~~v~vSA~~g 341 (549)
.. .+++++|+|+..++...+.. +.+.+.. .+.|+++|+||+|+.+... ....... . .++ +++++||+++
T Consensus 165 ~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 165 TKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp TSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred cCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccc
Confidence 44 56777788877665555432 4444433 3789999999999875432 1111100 0 122 5788999999
Q ss_pred CChhhhHHHHHH
Q 008909 342 TGTGELLDLVCS 353 (549)
Q Consensus 342 ~gi~~L~~~i~~ 353 (549)
.|+.++++.+..
T Consensus 243 ~~i~~l~~~l~~ 254 (353)
T 2x2e_A 243 DGKKDITAALAA 254 (353)
T ss_dssp HTTCCHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 999999988865
No 368
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=5.9e-14 Score=143.09 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=94.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhc------CCCeeecCCCCcee-------e----------------eeEEE-------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVG------EDRTIVSPISGTTR-------D----------------AIDTE------- 413 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~------~~~~~~~~~~gtt~-------~----------------~~~~~------- 413 (549)
....|+++|.+|+||||++++++. .++..+...++++. + .....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 456899999999999999999863 22222221111111 0 00000
Q ss_pred --------EeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh
Q 008909 414 --------FTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE 485 (549)
Q Consensus 414 --------~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~ 485 (549)
.....+..+.||||||+... ....+..+|++++|+|+..+...+... ..+ .
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~-----------------~~~~~~~aD~vl~V~d~~~~~~~~~l~--~~~--~ 216 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS-----------------EVAVANMVDTFVLLTLARTGDQLQGIK--KGV--L 216 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH-----------------HHHHHTTCSEEEEEEESSTTCTTTTCC--TTS--G
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH-----------------HHHHHHhCCEEEEEECCCCCccHHHHH--HhH--h
Confidence 00124678999999998431 112358999999999987543221111 111 2
Q ss_pred CCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcC-----C-CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 486 GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-----D-WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 486 ~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~-----~-~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..|+++|+||+|+...... ......+.+.+... . ..+++++||++|.|+++|+++|.+.+
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEA---RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp GGCSEEEEECCCGGGHHHH---HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHH---HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999998643221 12233344443222 2 36899999999999999999997754
No 369
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.46 E-value=3.9e-14 Score=154.95 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCce-----------eeecC------CCccccceeeeeeeCCceEEEEEcccccccC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVDE------PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~-----------~~~~~------~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~ 225 (549)
+.+|+|+||.++|||||..+|+..... .+.++ .|+|.......+.|++..+.|+||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 567999999999999999998622110 11111 2566666666778899999999999998753
Q ss_pred CCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCe
Q 008909 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (549)
Q Consensus 226 ~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (549)
. .+.+.++.+|.+|+|+|+..+...+...+++.+.+. +.|
T Consensus 82 ~--------------------------------------Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp 121 (638)
T 3j25_A 82 A--------------------------------------EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--GIP 121 (638)
T ss_dssp H--------------------------------------HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--TCS
T ss_pred H--------------------------------------HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCC
Confidence 2 455788999999999999999999999988888776 889
Q ss_pred EEEEeccCCCC
Q 008909 306 IILAVNKCESP 316 (549)
Q Consensus 306 ~ivv~NK~D~~ 316 (549)
+++++||+|..
T Consensus 122 ~i~~INKmDr~ 132 (638)
T 3j25_A 122 TIFFINKIDQN 132 (638)
T ss_dssp CEECCEECCSS
T ss_pred eEEEEeccccc
Confidence 99999999954
No 370
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=4.3e-13 Score=124.05 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=82.1
Q ss_pred CCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCee--ecCCCCceeeeeEEEEeccC
Q 008909 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEFTGPE 418 (549)
Q Consensus 341 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~--~~~~~gtt~~~~~~~~~~~~ 418 (549)
...+..+...+.+.+..... .......+|+++|.+|+|||||+|++++..... ....++++.+. .
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~ 89 (193)
T 2ged_A 23 KRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------D 89 (193)
T ss_dssp TTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------C
T ss_pred HHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------c
Confidence 34556666666555443221 112345689999999999999999999865322 12333333332 4
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcc-ccCCHhH-HHHHHHHHH-------hCCcE
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM-ACITEQD-CRIAERIEQ-------EGKGC 489 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~-~~~~~~~-~~~l~~l~~-------~~~p~ 489 (549)
+..+.+|||||+.++.. ... ......+..+|++++|+|++ +...... ..++..+.. .+.|+
T Consensus 90 ~~~~~l~Dt~G~~~~~~------~~~----~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 159 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRY------KLS----DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159 (193)
T ss_dssp CTTCSEEEETTCCBSSC------CHH----HHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred CCeEEEEECCCCchHHH------HHH----HHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCE
Confidence 56789999999976532 111 11122345699999999998 4322222 123333322 37999
Q ss_pred EEEEecccCCCCCch
Q 008909 490 LIVVNKWDTIPNKNQ 504 (549)
Q Consensus 490 ivv~NK~Dl~~~~~~ 504 (549)
++|+||+|+......
T Consensus 160 ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 160 LIACNKSELFTARPP 174 (193)
T ss_dssp EEEEECTTSTTCCCH
T ss_pred EEEEEchHhcCCCCH
Confidence 999999999876543
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=9.1e-14 Score=131.44 Aligned_cols=142 Identities=19% Similarity=0.134 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceee--ecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIV--VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...++|+++|.+|+|||||+|+|++...... ...+.++. .+.+..+.+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~----------- 71 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYK----------- 71 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCGGGTHH-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcHHHHHH-----------
Confidence 4578999999999999999999997753211 11222221 124567899999999653210
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCC-CCCCc--chHHHHHHHHH----ccCCCeEEEEec
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-AGLTA--ADEEIADWLRK----NYMDKFIILAVN 311 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~-~~~~~--~~~~~~~~l~~----~~~~~p~ivv~N 311 (549)
+...+...+..+|++|+|+|++ .+.+. ....+...+.. ...+.|+++|+|
T Consensus 72 -----------------------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 72 -----------------------LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp -----------------------HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred -----------------------HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 1112223334589999999998 33222 22223333322 124789999999
Q ss_pred cCCCChhhHHh---------HHHH-HHcCCCceEeeccCCCC
Q 008909 312 KCESPRKGIMQ---------VSEF-WSLGFSPLPISAISGTG 343 (549)
Q Consensus 312 K~D~~~~~~~~---------~~~~-~~~~~~~v~vSA~~g~g 343 (549)
|+|+....... ...+ ...+.+++++||++|.+
T Consensus 129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred chHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99987542211 1111 11234678899998764
No 372
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.46 E-value=1.5e-13 Score=140.09 Aligned_cols=149 Identities=25% Similarity=0.251 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhh------CCCceeeecCCCccccc-----------------ee---------------
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVTRDR-----------------MY--------------- 203 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t~~~-----------------~~--------------- 203 (549)
+.++|+|+|.+|+|||||+++|. |.+...+...++.+... ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 46789999999999999999986 33333333222222100 00
Q ss_pred -------eeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEE
Q 008909 204 -------GRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVI 276 (549)
Q Consensus 204 -------~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~i 276 (549)
..+...+..+.+|||||+.+. ....+..+|++
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~-----------------------------------------~~~~~~~aD~v 196 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS-----------------------------------------EVAVANMVDTF 196 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH-----------------------------------------HHHHHTTCSEE
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH-----------------------------------------HHHHHHhCCEE
Confidence 011235788999999997431 11334789999
Q ss_pred EEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHh-----HHHH---H-----HcCCCceEeeccCCCC
Q 008909 277 IFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-----VSEF---W-----SLGFSPLPISAISGTG 343 (549)
Q Consensus 277 llVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~-----~~~~---~-----~~~~~~v~vSA~~g~g 343 (549)
++|+|...+.... .+.......|.++|+||+|+....... .... . .++.+++++||++|.|
T Consensus 197 l~V~d~~~~~~~~------~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 197 VLLTLARTGDQLQ------GIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp EEEEESSTTCTTT------TCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred EEEECCCCCccHH------HHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 9999976543221 111222356899999999987542211 1111 1 1145799999999999
Q ss_pred hhhhHHHHHHHhhh
Q 008909 344 TGELLDLVCSELKK 357 (549)
Q Consensus 344 i~~L~~~i~~~l~~ 357 (549)
++++++.+.+.+..
T Consensus 271 i~~L~~~i~~~~~~ 284 (355)
T 3p32_A 271 LAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 373
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.45 E-value=6.4e-14 Score=157.64 Aligned_cols=153 Identities=17% Similarity=0.228 Sum_probs=104.2
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeec---------------CCCCceeeeeEEEEecc---------------CC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVS---------------PISGTTRDAIDTEFTGP---------------EG 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~---------------~~~gtt~~~~~~~~~~~---------------~~ 419 (549)
...+|+++|++|+|||||++++++....... ...|+|+......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 3568999999999999999999864222111 12344544333333221 15
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCC
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~ 499 (549)
..++||||||+.+|.. .+.++++.+|++|+|||++++.+.++..+|..+...++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~~--------------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS--------------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCH--------------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHH--------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 6799999999988642 24557899999999999999999999998888888899999999999986
Q ss_pred CCC----c---hhhhHHHHHHHHHHHhc--------CCCC----CEEEEccccCCC
Q 008909 500 PNK----N---QQTATYYEQDVREKLRA--------LDWA----PIVYSTAIAGQS 536 (549)
Q Consensus 500 ~~~----~---~~~~~~~~~~~~~~l~~--------~~~~----~~i~iSA~~g~~ 536 (549)
... . ........+.+...+.. .... ++...||++|++
T Consensus 164 ~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~ 219 (842)
T 1n0u_A 164 LLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA 219 (842)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccc
Confidence 311 0 11122334444444431 1122 577789999865
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.45 E-value=1.9e-13 Score=138.53 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=93.5
Q ss_pred cccceEEEeCCCCCChhHHHHHHhc------CCCeeecCCCCceee-------------------eeEEEE---------
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVG------EDRTIVSPISGTTRD-------------------AIDTEF--------- 414 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~------~~~~~~~~~~gtt~~-------------------~~~~~~--------- 414 (549)
.....++++|.+|+||||++|.+++ .++..+...++++.. .+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4456899999999999999999963 232333333332220 000000
Q ss_pred ----------eccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHH
Q 008909 415 ----------TGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ 484 (549)
Q Consensus 415 ----------~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~ 484 (549)
..+.+..++||||||+.++.. ...+.+|++++|+|++.+.. ...+.. ..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~-----------------~~~~~aD~vl~Vvd~~~~~~---~~~l~~-~~ 192 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSET-----------------EVARMVDCFISLQIAGGGDD---LQGIKK-GL 192 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH-----------------HHHTTCSEEEEEECC---------CCCCH-HH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHH-----------------HHHHhCCEEEEEEeCCccHH---HHHHHH-hh
Confidence 003467899999999865310 13589999999999975421 111111 11
Q ss_pred hCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC------CCCEEEEccccCCCHHHHHHHHHhh
Q 008909 485 EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD------WAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 485 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~------~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
.+.|.++|+||+|+...... ....+.+.+.+.... ..+++++||++|.|+++|+++|.+.
T Consensus 193 ~~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 193 MEVADLIVINKDDGDNHTNV---AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHCSEEEECCCCTTCHHHH---HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred hcccCEEEEECCCCCChHHH---HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 24688999999998753211 112233444333222 3578999999999999999998764
No 375
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.45 E-value=1.8e-13 Score=135.55 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=97.0
Q ss_pred eEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhccccc
Q 008909 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (549)
Q Consensus 165 ~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 244 (549)
+|+++|..|||||||++++.+..........+.|.......+. ....+.+|||||++++.... +
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~--l------------- 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS--Y------------- 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS--H-------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh--h-------------
Confidence 5889999999999999988765321111123344444333332 23679999999998763210 0
Q ss_pred CCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHH---HccCCCeEEEEeccCCCChhhH-
Q 008909 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KNYMDKFIILAVNKCESPRKGI- 320 (549)
Q Consensus 245 Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~---~~~~~~p~ivv~NK~D~~~~~~- 320 (549)
....+++.++++|+|+|++..+......+.+++. ....+.|+++++||+|+.....
T Consensus 65 --------------------~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R 124 (331)
T 3r7w_B 65 --------------------DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK 124 (331)
T ss_dssp --------------------HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH
T ss_pred --------------------hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhh
Confidence 1225678899999999998762222223333332 2345789999999999975421
Q ss_pred ------HhHH---HHHH-----cCCCceEeeccCCCChhhhHHHHHHHh
Q 008909 321 ------MQVS---EFWS-----LGFSPLPISAISGTGTGELLDLVCSEL 355 (549)
Q Consensus 321 ------~~~~---~~~~-----~~~~~v~vSA~~g~gi~~L~~~i~~~l 355 (549)
.... .+.. .+++++++||+. .++.+.+..+.+.+
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred hhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 1111 1112 235678999987 57888887776544
No 376
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=6.1e-13 Score=132.29 Aligned_cols=142 Identities=20% Similarity=0.176 Sum_probs=95.1
Q ss_pred HHhhhccEEEEEEeCCCCC-Ccch-HHHHHHHHHccCCCeEEEEeccCCCChhh----HHhHHH-HHHcCCCceEeeccC
Q 008909 268 AAIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG----IMQVSE-FWSLGFSPLPISAIS 340 (549)
Q Consensus 268 ~~i~~~d~illVvD~~~~~-~~~~-~~~~~~l~~~~~~~p~ivv~NK~D~~~~~----~~~~~~-~~~~~~~~v~vSA~~ 340 (549)
.+++++|.+++|+|++++. +... ..++..+.. .+.|+++|+||+|+.+.. ...... +...+++++++||++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~ 152 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKT 152 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3578999999999998764 3331 122223333 489999999999997653 222222 234678899999999
Q ss_pred CCChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCC-------ceeeeeEEE
Q 008909 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTE 413 (549)
Q Consensus 341 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~g-------tt~~~~~~~ 413 (549)
|.|+++|+..+. ...++++|.+|+|||||+|.++ .....+..... +|+....
T Consensus 153 g~gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~-- 211 (302)
T 2yv5_A 153 GEGIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL-- 211 (302)
T ss_dssp CTTHHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--
T ss_pred CCCHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--
Confidence 999999877652 2367999999999999999998 65444443332 3433221
Q ss_pred EeccCCCeEEEEeCCCccchh
Q 008909 414 FTGPEGQKFRLIDTAGIRKRA 434 (549)
Q Consensus 414 ~~~~~~~~i~l~DTpG~~~~~ 434 (549)
... . ..-.++||||+..+.
T Consensus 212 ~~~-~-~~g~v~d~pg~~~~~ 230 (302)
T 2yv5_A 212 IPF-G-KGSFVGDTPGFSKVE 230 (302)
T ss_dssp EEE-T-TTEEEESSCCCSSCC
T ss_pred EEc-C-CCcEEEECcCcCcCc
Confidence 111 1 224789999997543
No 377
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.5e-13 Score=138.50 Aligned_cols=166 Identities=15% Similarity=0.080 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCC------Cccccce--eeeeeeCCc--eEEEEEcccccccCCCCcchh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRDRM--YGRSFWGEH--EFMLVDTGGVLNVSKSQPNIM 232 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~------~~t~~~~--~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~ 232 (549)
..+|+|+|++|+|||||+|+|++.........+ ..|.... ...+...+. .+.+|||||+.+.....+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e--- 113 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD--- 113 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC---------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH---
Confidence 457899999999999999999876533222111 1222222 222233443 689999999965332111
Q ss_pred hhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhh-------------ccEEEEEEeC-CCCCCcchHHHHHHHH
Q 008909 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SCVIIFLVDG-QAGLTAADEEIADWLR 298 (549)
Q Consensus 233 ~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~-------------~d~illVvD~-~~~~~~~~~~~~~~l~ 298 (549)
....+..++..++..++.. +++++++++. ..++...+..+...+.
T Consensus 114 ---------------------~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~ 172 (361)
T 2qag_A 114 ---------------------CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 172 (361)
T ss_dssp -----------------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc
Confidence 0111222233333333322 3567777775 5566666555544442
Q ss_pred HccCCCeEEEEeccCCCChhhHHhH-----HHHH-HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 299 KNYMDKFIILAVNKCESPRKGIMQV-----SEFW-SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 299 ~~~~~~p~ivv~NK~D~~~~~~~~~-----~~~~-~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.+.|+|+|+||+|+........ ..+. ..+++++++||++|.+ .+.+..+...+.
T Consensus 173 ---~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 173 ---NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp ---S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred ---cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 4789999999999976543221 1111 2467899999999998 666665555443
No 378
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.44 E-value=4.6e-13 Score=147.12 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCcee-----------eec------CCCccccceeeeeeeCCceEEEEEccccccc
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-----------VVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~ 224 (549)
...+|+|+|++|+|||||+++|++..... ..+ ..++|.......+.+.+..+.+|||||+.++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 35689999999999999999998432110 000 1245555555666677888999999998753
Q ss_pred CCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCC
Q 008909 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (549)
Q Consensus 225 ~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (549)
. ..+.+++..+|.+++|+|+..+...+...++..+... +.
T Consensus 88 ~--------------------------------------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~--~i 127 (665)
T 2dy1_A 88 V--------------------------------------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--GL 127 (665)
T ss_dssp H--------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TC
T ss_pred H--------------------------------------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc--cC
Confidence 2 2345677889999999999988888777777777664 88
Q ss_pred eEEEEeccCCCC
Q 008909 305 FIILAVNKCESP 316 (549)
Q Consensus 305 p~ivv~NK~D~~ 316 (549)
|+++++||+|+.
T Consensus 128 p~ilv~NKiD~~ 139 (665)
T 2dy1_A 128 PRMVVVTKLDKG 139 (665)
T ss_dssp CEEEEEECGGGC
T ss_pred CEEEEecCCchh
Confidence 999999999986
No 379
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.42 E-value=3.9e-13 Score=137.44 Aligned_cols=164 Identities=20% Similarity=0.189 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCcccc----------------------------------------
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD---------------------------------------- 200 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~---------------------------------------- 200 (549)
...|+|+|+|.+|+|||||+|+|+|......+. ..+|..
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 357899999999999999999999975322111 111111
Q ss_pred --------------ceeeee-eeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHH
Q 008909 201 --------------RMYGRS-FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQ 265 (549)
Q Consensus 201 --------------~~~~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~ 265 (549)
.....+ ...+..+.+|||||+.+.....+. ......+...
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~-------------------------~~~~~~~~~~ 165 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQS-------------------------DSIVKDIENM 165 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCC-------------------------SSHHHHHHHH
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCc-------------------------hhHHHHHHHH
Confidence 001011 112456899999999875331110 0112234456
Q ss_pred HHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHc-cCCCeEEEEeccCCCChhhHHhHHHH----HHcCCCceEeeccC
Q 008909 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEF----WSLGFSPLPISAIS 340 (549)
Q Consensus 266 ~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~-~~~~p~ivv~NK~D~~~~~~~~~~~~----~~~~~~~v~vSA~~ 340 (549)
+..++..+|++|+|+|...... ....+..++... ..+.|+++|+||+|+.+......... ...+++++++|+.+
T Consensus 166 ~~~~i~~~d~iilvv~~~~~~~-~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 244 (360)
T 3t34_A 166 VRSYIEKPNCIILAISPANQDL-ATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRS 244 (360)
T ss_dssp HHHHHHSSSEEEEEEEETTSCG-GGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCC
T ss_pred HHHHhhcCCeEEEEeecccCCc-CCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECC
Confidence 7788899999999998643211 112233333332 13679999999999876432211111 12355789999999
Q ss_pred CCChhhhHHHH
Q 008909 341 GTGTGELLDLV 351 (549)
Q Consensus 341 g~gi~~L~~~i 351 (549)
+.++.+.+...
T Consensus 245 ~~~i~~~~~~~ 255 (360)
T 3t34_A 245 QADINKNVDMI 255 (360)
T ss_dssp HHHHHTTCCHH
T ss_pred hHHhccCCCHH
Confidence 98887765443
No 380
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.42 E-value=6.3e-13 Score=135.04 Aligned_cols=90 Identities=28% Similarity=0.304 Sum_probs=65.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEecc--------------------CCCeEEEEeCCCcc
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--------------------EGQKFRLIDTAGIR 431 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~--------------------~~~~i~l~DTpG~~ 431 (549)
.+++++|.+|+|||||+|++++.. ..+...|++|++......... .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 368999999999999999999864 456777888877655544321 23579999999997
Q ss_pred chhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc
Q 008909 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (549)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~ 469 (549)
++... ........+.+++.+|++++|+|+++
T Consensus 81 ~~a~~-------~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHK-------GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCS-------SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccc-------cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 64321 11112455668899999999999975
No 381
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.41 E-value=3.2e-13 Score=131.55 Aligned_cols=170 Identities=13% Similarity=0.170 Sum_probs=100.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHh-----cCCCeeecCCCCc----------------eeeeeEEEE--------------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALV-----GEDRTIVSPISGT----------------TRDAIDTEF-------------- 414 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll-----~~~~~~~~~~~gt----------------t~~~~~~~~-------------- 414 (549)
+...+++.|.+|+||||+.+.+. +.++..+...++. +++......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34578889999999999999998 6555544433321 111000000
Q ss_pred -----------eccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHH-HH---
Q 008909 415 -----------TGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IA--- 479 (549)
Q Consensus 415 -----------~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~l--- 479 (549)
....+..+.||||||+.++..+. .........+.. +++++|+|+.......+.. .+
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~--------~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFH--------EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS--------HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh--------hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 00112479999999996543210 001222234456 8999999997655544433 11
Q ss_pred -HHHHHhCCcEEEEEecccCCCCCchhhhHHHHHH---HHHH------------------HhcC-CCCCEEEEccccCCC
Q 008909 480 -ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQD---VREK------------------LRAL-DWAPIVYSTAIAGQS 536 (549)
Q Consensus 480 -~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~------------------l~~~-~~~~~i~iSA~~g~~ 536 (549)
......++|+++|+||+|+..........+.... +.+. +... ...+++++||++|.|
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred HHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc
Confidence 2233457999999999998754321111111100 1111 1222 234899999999999
Q ss_pred HHHHHHHHHhhh
Q 008909 537 VDKYVLYLATSF 548 (549)
Q Consensus 537 v~~L~~~l~~~~ 548 (549)
+++|+++|.+.+
T Consensus 244 i~~l~~~i~~~~ 255 (262)
T 1yrb_A 244 FEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.39 E-value=6.9e-13 Score=134.36 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=90.7
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhh------CCCceeeecCCCcccc--------------------cee---------e-
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVTRD--------------------RMY---------G- 204 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t~~--------------------~~~---------~- 204 (549)
.....|+++|++|+|||||+|.|. +.+...+...++.+.. +.. +
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 346789999999999999999996 3343444444433220 000 0
Q ss_pred ---------eeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccE
Q 008909 205 ---------RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCV 275 (549)
Q Consensus 205 ---------~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~ 275 (549)
...+.+.++.+|||||+.+.. ......+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~-----------------------------------------~~~~~~aD~ 172 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE-----------------------------------------TEVARMVDC 172 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH-----------------------------------------HHHHTTCSE
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH-----------------------------------------HHHHHhCCE
Confidence 011457889999999986411 012477999
Q ss_pred EEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh-HHhHH-HHH----Hc-------CCCceEeeccCCC
Q 008909 276 IIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG-IMQVS-EFW----SL-------GFSPLPISAISGT 342 (549)
Q Consensus 276 illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~-~~~~~-~~~----~~-------~~~~v~vSA~~g~ 342 (549)
+++|+|+..+...... .... .+.|.++|+||+|+.... ..... .+. .. ..+++++||++|.
T Consensus 173 vl~Vvd~~~~~~~~~l--~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 246 (341)
T 2p67_A 173 FISLQIAGGGDDLQGI--KKGL----MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKR 246 (341)
T ss_dssp EEEEECC------CCC--CHHH----HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB
T ss_pred EEEEEeCCccHHHHHH--HHhh----hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCC
Confidence 9999998654221110 0011 146789999999997542 11111 111 11 2357899999999
Q ss_pred ChhhhHHHHHHHhh
Q 008909 343 GTGELLDLVCSELK 356 (549)
Q Consensus 343 gi~~L~~~i~~~l~ 356 (549)
|++++++.+...+.
T Consensus 247 gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 247 GIDEIWHAIIDFKT 260 (341)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887654
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.38 E-value=2.2e-13 Score=129.12 Aligned_cols=154 Identities=13% Similarity=0.079 Sum_probs=93.4
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcC-----CCeeecCCCCceeeee-------E-EEEe-----------------ccCC
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDAI-------D-TEFT-----------------GPEG 419 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~-----~~~~~~~~~gtt~~~~-------~-~~~~-----------------~~~~ 419 (549)
..+.++++|.+|+||||+++++++. +...+...++++.+.. . ..+. ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3568999999999999999999864 1122223333322110 0 0000 1234
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCC
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~ 499 (549)
..+.+|||||+.... .. ....++.+++|+|++.+... .+......+.|.++|+||+|+.
T Consensus 109 ~d~iiidt~G~~~~~---------~~--------~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---------VD--------FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp CSEEEEEEEEBSSGG---------GG--------CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred CCEEEEeCCCCCCCC---------ch--------hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 578899999962110 00 01256789999999875321 2222333468999999999986
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 500 PNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..... ..+...+.+.+. ....+++++||++|.|+++|+++|.+.+
T Consensus 168 ~~~~~-~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 168 EAVGA-DVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHTC-CHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cchhh-HHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 42111 111222222222 2346899999999999999999998754
No 384
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=3.1e-12 Score=129.09 Aligned_cols=89 Identities=27% Similarity=0.291 Sum_probs=64.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC-----------------ceEEEEEcccccccCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVSK 226 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~~ 226 (549)
.+|+|+|.+|||||||+|+|++.. +.+.++|++|.++..+.+.+.+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 579999999999999999999876 6788899999999888887766 4699999999975321
Q ss_pred CCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCC
Q 008909 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (549)
Q Consensus 227 ~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~ 284 (549)
.... +...++..++.+|++++|+|+..
T Consensus 82 ~~~g-------------------------------l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEG-------------------------------LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGG-------------------------------GTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccch-------------------------------HHHHHHHHHHhcCeEEEEEecCC
Confidence 0000 11234467789999999999875
No 385
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.36 E-value=6.6e-13 Score=131.29 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=95.6
Q ss_pred HhhhccEEEEEEeCCCCCCcchHHHHHHHHH-ccCCCeEEEEeccCCCChhhH-----HhHHHHH-HcCCCceEeeccCC
Q 008909 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI-----MQVSEFW-SLGFSPLPISAISG 341 (549)
Q Consensus 269 ~i~~~d~illVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~-----~~~~~~~-~~~~~~v~vSA~~g 341 (549)
.++++|.+++|+|+..|....+ .+.++|.. ...++|.++|+||+|+.+... ......+ ..|++++.+||.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4789999999999998766665 55566542 224889999999999986532 2233333 56889999999999
Q ss_pred CChhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCCeeecCCC-------CceeeeeEEEE
Q 008909 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEF 414 (549)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~-------gtt~~~~~~~~ 414 (549)
.|+++|+... ....++++|.+|+|||||+|.+++.....+.... ++|+.......
T Consensus 162 ~g~~~L~~~~------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHF------------------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGG------------------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhc------------------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 9998876543 1347899999999999999999986544443332 35544322111
Q ss_pred eccCCCeEEEEeCCCccchh
Q 008909 415 TGPEGQKFRLIDTAGIRKRA 434 (549)
Q Consensus 415 ~~~~~~~i~l~DTpG~~~~~ 434 (549)
. ...++||||+..+.
T Consensus 224 ---~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 224 ---S--GGLVADTPGFSSLE 238 (307)
T ss_dssp ---T--TEEEESSCSCSSCC
T ss_pred ---C--CEEEecCCCccccc
Confidence 1 24789999997754
No 386
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=2.9e-12 Score=132.33 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=82.9
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecC------CCCce-eeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP------ISGTT-RDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGS 441 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~------~~gtt-~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~ 441 (549)
...|+++|.+|+|||||+|.++|........ ...++ ++.+...+. ..+ ..+.+|||||+..+........
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q-~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK-EGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------CH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe-cCCcccceeeeechhhhhhccchhhHH
Confidence 3468999999999999999999865322211 01111 111111111 112 2688999999976421000000
Q ss_pred hhhhhHHHHHHHH-----------Hh--cCCcEEEEEEcc-ccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhh
Q 008909 442 TTEALSVNRAFRA-----------IR--RSDVVALVIEAM-ACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTA 507 (549)
Q Consensus 442 ~~e~~~~~~~~~~-----------~~--~ad~~llVvD~~-~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~ 507 (549)
....+.......+ ++ .+|++|++++.+ +++...+..+++.+.. +.|+|+|+||+|+..... .
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~e---v 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEE---C 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHH---H
Confidence 0000000011111 22 345567776666 6788888888888765 799999999999976432 2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 508 TYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
..+...+.+.+... +.+++++||+++.++++++..+..
T Consensus 186 ~~~k~~i~~~~~~~-~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 186 QQFKKQIMKEIQEH-KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHH-TCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHc-CCeEEeCCCCCCcCHHHHHHHHHh
Confidence 23345556666654 468999999999999998877755
No 387
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.9e-12 Score=118.48 Aligned_cols=117 Identities=23% Similarity=0.210 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCcee--eecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
...++|+++|.+|||||||+|+|++..... ....++++. .+.+..+.+|||||+..+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~~---------- 108 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYKL---------- 108 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCH----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCchHHHHH----------
Confidence 346899999999999999999999875322 122222222 2256778999999997643321
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCC-CCCCcch--HHHHHHHHH----ccCCCeEEEEec
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-AGLTAAD--EEIADWLRK----NYMDKFIILAVN 311 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~-~~~~~~~--~~~~~~l~~----~~~~~p~ivv~N 311 (549)
...+...+..+|++|+|+|++ ...+... ..+...+.. ...+.|+++|+|
T Consensus 109 ------------------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 164 (193)
T 2ged_A 109 ------------------------SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 164 (193)
T ss_dssp ------------------------HHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred ------------------------HHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEE
Confidence 112234456689999999987 3111111 111222221 113789999999
Q ss_pred cCCCChh
Q 008909 312 KCESPRK 318 (549)
Q Consensus 312 K~D~~~~ 318 (549)
|+|+...
T Consensus 165 K~Dl~~~ 171 (193)
T 2ged_A 165 KSELFTA 171 (193)
T ss_dssp CTTSTTC
T ss_pred chHhcCC
Confidence 9998754
No 388
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.34 E-value=3.1e-12 Score=137.29 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=88.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCe--eecCCCCceeeeeEEEEe--------------------------------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRT--IVSPISGTTRDAIDTEFT-------------------------------- 415 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~--~~~~~~gtt~~~~~~~~~-------------------------------- 415 (549)
..+.|+++|.+|+|||||+|+|++.... .++..++|++........
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4578999999999999999999998754 466677665432111000
Q ss_pred ---ccCC---CeEEEEeCCCccchhhhccCCChhhh-h-HHHHHHHHHhcCCcEEEEEEccc-cCCHhHHHHHHHHHHhC
Q 008909 416 ---GPEG---QKFRLIDTAGIRKRAAIASSGSTTEA-L-SVNRAFRAIRRSDVVALVIEAMA-CITEQDCRIAERIEQEG 486 (549)
Q Consensus 416 ---~~~~---~~i~l~DTpG~~~~~~~~~~~~~~e~-~-~~~~~~~~~~~ad~~llVvD~~~-~~~~~~~~~l~~l~~~~ 486 (549)
...+ .++.||||||+.+... ..... + ....+..+++.+|++|+|+|+++ +...++..++..+...+
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~-----~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 218 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAK-----QRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE 218 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC------------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG
T ss_pred eEEeccccccCCEEEEECcCCCCcch-----hHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC
Confidence 0000 3689999999965210 00011 0 12334456789999999999988 46788888888888888
Q ss_pred CcEEEEEecccCCCC
Q 008909 487 KGCLIVVNKWDTIPN 501 (549)
Q Consensus 487 ~p~ivv~NK~Dl~~~ 501 (549)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 999999999999864
No 389
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.32 E-value=4.7e-12 Score=140.36 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCc-----------------eeeecCCCccccceeeeeeeC-------CceEEEEE
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----------------AIVVDEPGVTRDRMYGRSFWG-------EHEFMLVD 217 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~-----------------~~~~~~~~~t~~~~~~~~~~~-------~~~~~liD 217 (549)
+..+|+|+||.++|||||..+|+.... -......|+|.......+.|. ++.+.|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 466899999999999999999863210 011223456665555555554 46799999
Q ss_pred cccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHH
Q 008909 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL 297 (549)
Q Consensus 218 TpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l 297 (549)
|||+.+|.. .+.++++-+|.+|+|+|+..+...+...+++..
T Consensus 92 TPGHvDF~~--------------------------------------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a 133 (709)
T 4fn5_A 92 TPGHVDFTI--------------------------------------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA 133 (709)
T ss_dssp CCSCTTCHH--------------------------------------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred CCCCcccHH--------------------------------------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH
Confidence 999987542 455788899999999999999999999888887
Q ss_pred HHccCCCeEEEEeccCCCC
Q 008909 298 RKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 298 ~~~~~~~p~ivv~NK~D~~ 316 (549)
.+. +.|+++++||+|..
T Consensus 134 ~~~--~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 134 NKY--GVPRIVYVNKMDRQ 150 (709)
T ss_dssp HHH--TCCEEEEEECSSST
T ss_pred HHc--CCCeEEEEcccccc
Confidence 776 89999999999953
No 390
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.32 E-value=4.4e-12 Score=128.86 Aligned_cols=89 Identities=31% Similarity=0.377 Sum_probs=68.0
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeC---------------------CceEEEEEccccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---------------------EHEFMLVDTGGVL 222 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~~~liDTpG~~ 222 (549)
++|+|+|.||+|||||+|+|++.. +.+.+++++|.....+.+.+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999864 556788899988887766543 3469999999997
Q ss_pred ccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCC
Q 008909 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (549)
Q Consensus 223 ~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~ 284 (549)
......+. +.+.++..++.+|++++|+|+..
T Consensus 81 ~~a~~~~~-------------------------------lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEG-------------------------------LGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSC-------------------------------TTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccch-------------------------------HHHHHHHHHHhCCEEEEEEECCC
Confidence 64332111 11345567889999999999875
No 391
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.32 E-value=4.8e-12 Score=125.75 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=82.6
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeeecCC--------CCceeeeeEEEEeccC-CCeEEEEeCCCccchhhhccCCC
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPI--------SGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGS 441 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~--------~gtt~~~~~~~~~~~~-~~~i~l~DTpG~~~~~~~~~~~~ 441 (549)
..+|+++|.+|+|||||+|++++...+..... ++.........+...+ ...+.+|||||+...........
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 35789999999999999999987533322211 1111111111111111 24689999999943210000000
Q ss_pred hhhhhHHH---HHHHHHh----------cCCcEEEEEEccc-cCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhh
Q 008909 442 TTEALSVN---RAFRAIR----------RSDVVALVIEAMA-CITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTA 507 (549)
Q Consensus 442 ~~e~~~~~---~~~~~~~----------~ad~~llVvD~~~-~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~ 507 (549)
....+... ..++.+. .+++++++++.+. ++...+..+++.+. ...++++|+||+|+......
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~--- 173 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKER--- 173 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHH---
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHH---
Confidence 01111111 2222221 2345666666544 57777766666554 35799999999999753221
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHhh
Q 008909 508 TYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
....+++.+.+...+ .+++++||++| |++++|..+.+.
T Consensus 174 ~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 174 ERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp HHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHH
Confidence 122345555556554 68999999999 999999888764
No 392
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.31 E-value=2.5e-13 Score=128.73 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCC-----CceeeecCCCccccc--------eeeee------------------eeCCc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGG-----NRAIVVDEPGVTRDR--------MYGRS------------------FWGEH 211 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~-----~~~~~~~~~~~t~~~--------~~~~~------------------~~~~~ 211 (549)
.++|+++|++|+|||||+++|++. +...+...++.+.+. ....+ ...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 578999999999999999999854 223333333332111 00000 12345
Q ss_pred eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH
Q 008909 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (549)
Q Consensus 212 ~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~ 291 (549)
.+.+|||+|....+. . .-...+.+++|+|+..+...
T Consensus 110 d~iiidt~G~~~~~~---~--------------------------------------~~~~~~~~i~vvd~~~~~~~--- 145 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---D--------------------------------------FDLGENYRVVMVSVTEGDDV--- 145 (221)
T ss_dssp SEEEEEEEEBSSGGG---G--------------------------------------CCCSCSEEEEEEEGGGCTTH---
T ss_pred CEEEEeCCCCCCCCc---h--------------------------------------hccccCcEEEEEeCCCcchh---
Confidence 678888888521110 0 00134778999998765321
Q ss_pred HHHHHHHHccCCCeEEEEeccCCCChhh---HHhHHHHH---HcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 292 EIADWLRKNYMDKFIILAVNKCESPRKG---IMQVSEFW---SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 292 ~~~~~l~~~~~~~p~ivv~NK~D~~~~~---~~~~~~~~---~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
...+.... +.|+++|+||+|+.... ........ ..+.+++++||++|.|+.++++.+...+..
T Consensus 146 -~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 146 -VEKHPEIF--RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp -HHHCHHHH--HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred -hhhhhhhh--hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 11122222 57889999999986531 22222222 124578999999999999999999876643
No 393
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.29 E-value=5.5e-12 Score=135.33 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCCce--eeecCCCccccceeee---------------------------------
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGR--------------------------------- 205 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~--------------------------------- 205 (549)
...++|+|+|.+|+|||||+|+|++.... .++..++++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45789999999999999999999998753 4566665543211100
Q ss_pred ---eeeCC---ceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEE
Q 008909 206 ---SFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (549)
Q Consensus 206 ---~~~~~---~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illV 279 (549)
+.+.+ ..+.+|||||+.+..... +...+ .+...+...+..+|++|+|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~--~~~~~-------------------------~f~~~~~~~l~~aD~il~V 195 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQR--VSRGY-------------------------DFPAVLRWFAERVDLIILL 195 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC---------CCS-------------------------CHHHHHHHHHHHCSEEEEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhH--HHHHh-------------------------hHHHHHHHHHHhCCEEEEE
Confidence 00011 368999999997521100 00000 0112345667889999999
Q ss_pred EeCCC-CCCcchHHHHHHHHHccCCCeEEEEeccCCCChhh
Q 008909 280 VDGQA-GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (549)
Q Consensus 280 vD~~~-~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~ 319 (549)
+|++. +.......++..+... +.|+++|+||+|+....
T Consensus 196 vDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 196 FDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp EETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSCHH
T ss_pred EeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccCHH
Confidence 99977 3555555565555543 67899999999998543
No 394
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=6.6e-12 Score=122.20 Aligned_cols=161 Identities=17% Similarity=0.117 Sum_probs=98.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhh-----CCCceeeecCCCccc----------------cceeeee--------------
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLV-----GGNRAIVVDEPGVTR----------------DRMYGRS-------------- 206 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~-----~~~~~~~~~~~~~t~----------------~~~~~~~-------------- 206 (549)
+...+++.|.+|||||||++.|. |.+...+...++.+. .......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 46788999999999999999998 766655554443111 0000000
Q ss_pred -----------ee-CCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhcc
Q 008909 207 -----------FW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESC 274 (549)
Q Consensus 207 -----------~~-~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d 274 (549)
.+ .+..+.+|||||..+..... .+...+...+.. +
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~--------------------------------~l~~~~~~~~~~-~ 139 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFH--------------------------------EFGVRLMENLPY-P 139 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS--------------------------------HHHHHHHHTSSS-C
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh--------------------------------hhHHHHHHHHhh-c
Confidence 00 12479999999986421100 011223344566 8
Q ss_pred EEEEEEeCCCCCCcchHHH-H----HHHHHccCCCeEEEEeccCCCChhhHHh-HHH----------H------------
Q 008909 275 VIIFLVDGQAGLTAADEEI-A----DWLRKNYMDKFIILAVNKCESPRKGIMQ-VSE----------F------------ 326 (549)
Q Consensus 275 ~illVvD~~~~~~~~~~~~-~----~~l~~~~~~~p~ivv~NK~D~~~~~~~~-~~~----------~------------ 326 (549)
++++|+|+.......+... . ..... .+.|+++|+||+|+....... ... .
T Consensus 140 ~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 217 (262)
T 1yrb_A 140 LVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA 217 (262)
T ss_dssp EEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH
T ss_pred eEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhH
Confidence 9999999865444433221 1 11112 268999999999987542110 000 0
Q ss_pred -------HH--cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 327 -------WS--LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 327 -------~~--~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.. ...+++++||++|.|++++++.+.+.++.
T Consensus 218 ~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 218 YKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 11 22378999999999999999999877653
No 395
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.28 E-value=2.7e-12 Score=144.50 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=82.3
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeee---------------cCCCccccceeeeeeeC----------------Cc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWG----------------EH 211 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~ 211 (549)
.++|+|+|++|+|||||+++|++....... ...++|.......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 467999999999999999999864221111 12344544444334443 56
Q ss_pred eEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchH
Q 008909 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (549)
Q Consensus 212 ~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~ 291 (549)
.+.+|||||+.++.. .+.+++..+|++|+|+|+..+...++.
T Consensus 99 ~i~liDTPG~~df~~--------------------------------------~~~~~l~~aD~ailVvDa~~g~~~qt~ 140 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS--------------------------------------EVTAALRVTDGALVVVDTIEGVCVQTE 140 (842)
T ss_dssp EEEEECCCCCCSSCH--------------------------------------HHHHHHHTCSEEEEEEETTTBSCHHHH
T ss_pred eEEEEECcCchhhHH--------------------------------------HHHHHHHhCCEEEEEEeCCCCCCHHHH
Confidence 789999999987432 344677889999999999998888877
Q ss_pred HHHHHHHHccCCCeEEEEeccCCCC
Q 008909 292 EIADWLRKNYMDKFIILAVNKCESP 316 (549)
Q Consensus 292 ~~~~~l~~~~~~~p~ivv~NK~D~~ 316 (549)
.++..+... +.|+++++||+|+.
T Consensus 141 ~~~~~~~~~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 141 TVLRQALGE--RIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHHT--TCEEEEEEECHHHH
T ss_pred HHHHHHHHc--CCCeEEEEECCCcc
Confidence 665555444 78999999999976
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.24 E-value=3e-11 Score=121.88 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=92.6
Q ss_pred cccceEEEeCCCCCChhHHHHHHhc------CCCeeecCCCCcee-----------------------------------
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVG------EDRTIVSPISGTTR----------------------------------- 407 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~------~~~~~~~~~~gtt~----------------------------------- 407 (549)
.....++++|.+|+|||||+|.+++ .++......++++.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4466899999999999999999984 33222222221111
Q ss_pred --eeeEEE-EeccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHH-HHHH
Q 008909 408 --DAIDTE-FTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIA-ERIE 483 (549)
Q Consensus 408 --~~~~~~-~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l-~~l~ 483 (549)
+..... .....+..+.++||||+.+.. ......+|++++|+|+..+. +...+ ..+.
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----------------~~v~~~~d~vl~v~d~~~~~---~~~~i~~~i~ 192 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE-----------------TAVADLTDFFLVLMLPGAGD---ELQGIKKGIF 192 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----------------HHHHTTSSEEEEEECSCC---------CCTTHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch-----------------hhHHhhCCEEEEEEcCCCcc---cHHHHHHHHh
Confidence 110000 001257789999999995421 01247899999999986431 11111 1111
Q ss_pred HhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCC------CCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 484 QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD------WAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 484 ~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~------~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
..+.++|+||+|+...... .....+.+...+.... .++++++||++|.|+++|++.|.+.+
T Consensus 193 --~~~~ivvlNK~Dl~~~~~~--s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 193 --ELADMIAVNKADDGDGERR--ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp --HHCSEEEEECCSTTCCHHH--HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --ccccEEEEEchhccCchhH--HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2466788899997643211 1112233333333222 36899999999999999999997753
No 397
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.22 E-value=6.4e-12 Score=126.76 Aligned_cols=148 Identities=24% Similarity=0.217 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCCCchhhHHHhhh------CCCceeeecCCCcccc-----------------------------------
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVTRD----------------------------------- 200 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t~~----------------------------------- 200 (549)
....|+|+|++|+|||||+|.|. +.+....+..+..+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 35689999999999999999997 3444444333322210
Q ss_pred --ceee--eeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEE
Q 008909 201 --RMYG--RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVI 276 (549)
Q Consensus 201 --~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~i 276 (549)
.... .+...+.++.++||||+.+. . ......+|++
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~----~-------------------------------------~~v~~~~d~v 172 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQS----E-------------------------------------TAVADLTDFF 172 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSC----H-------------------------------------HHHHTTSSEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcc----h-------------------------------------hhHHhhCCEE
Confidence 0000 01235789999999998541 0 0123678999
Q ss_pred EEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCCh-hhH----HhHHHH-HH--c------CCCceEeeccCCC
Q 008909 277 IFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-KGI----MQVSEF-WS--L------GFSPLPISAISGT 342 (549)
Q Consensus 277 llVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~-~~~----~~~~~~-~~--~------~~~~v~vSA~~g~ 342 (549)
++|+|+..+.... .+...+. ..+.++++||+|+.. ... .+.... .. . ..+++++||+++.
T Consensus 173 l~v~d~~~~~~~~--~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~ 246 (337)
T 2qm8_A 173 LVLMLPGAGDELQ--GIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGK 246 (337)
T ss_dssp EEEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB
T ss_pred EEEEcCCCcccHH--HHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCC
Confidence 9999975432100 0101111 235577889999753 211 111111 10 1 2467899999999
Q ss_pred ChhhhHHHHHHHhh
Q 008909 343 GTGELLDLVCSELK 356 (549)
Q Consensus 343 gi~~L~~~i~~~l~ 356 (549)
|+++|++.+.+...
T Consensus 247 gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 247 GLDSLWSRIEDHRS 260 (337)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887654
No 398
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.22 E-value=5.5e-11 Score=118.04 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCC------Cccccce--eeeeeeCC--ceEEEEEcccccccCCCCcchh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRDRM--YGRSFWGE--HEFMLVDTGGVLNVSKSQPNIM 232 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~------~~t~~~~--~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~ 232 (549)
..+|+|+|.+|+|||||+|+|.+.........+ ..|.... .......+ ..+.+|||||+.......+.+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~- 96 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF- 96 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH-
Confidence 468899999999999999999876322211110 0111111 11112222 468999999985421100000
Q ss_pred hhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHH---------hhhccEEEEEEeCCC-CCCcchHHHHHHHHHccC
Q 008909 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA---------IEESCVIIFLVDGQA-GLTAADEEIADWLRKNYM 302 (549)
Q Consensus 233 ~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~---------i~~~d~illVvD~~~-~~~~~~~~~~~~l~~~~~ 302 (549)
.. +... +...+....... ...+++++++.+... ++...+. ..++....
T Consensus 97 ~~----------------l~~~---l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~ 154 (301)
T 2qnr_A 97 KT----------------IISY---IDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHN 154 (301)
T ss_dssp TT----------------HHHH---HHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTT
T ss_pred HH----------------HHHH---HHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHh
Confidence 00 0000 111111111111 122344555555432 3555543 33333323
Q ss_pred CCeEEEEeccCCCChhhHHh-----HHH-HHHcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 303 DKFIILAVNKCESPRKGIMQ-----VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 303 ~~p~ivv~NK~D~~~~~~~~-----~~~-~~~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+.++++|+||+|+....... ... ....+++++++||++| |+++++..+.+.+.
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 57899999999987543221 112 2345778999999999 99999988877664
No 399
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.22 E-value=2.4e-11 Score=122.38 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=91.1
Q ss_pred hhhccEEEEEEeCCCCCCcchHHHHHHHHH-ccCCCeEEEEeccCCCChhhHH----hH-HHHHHcCCCceEeeccCCCC
Q 008909 270 IEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM----QV-SEFWSLGFSPLPISAISGTG 343 (549)
Q Consensus 270 i~~~d~illVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ivv~NK~D~~~~~~~----~~-~~~~~~~~~~v~vSA~~g~g 343 (549)
++++|.+++| |+..|.... ..+-++|.. ...++++++|+||+|+.+.... .. ..+...|++++.+||.++.|
T Consensus 128 ~anvD~v~iv-~a~~P~~~~-~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSL-NIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp EECCCEEEEE-EESTTTCCH-HHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred HhcCCEEEEE-EeCCCCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence 6889999976 555554333 345555532 1137888999999999865431 12 23445789999999999999
Q ss_pred hhhhHHHHHHHhhhhccchhhhhcccccceEEEeCCCCCChhHHHHHHhcCCC-eeecCCC---C----ceeeeeEEEEe
Q 008909 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDR-TIVSPIS---G----TTRDAIDTEFT 415 (549)
Q Consensus 344 i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~~G~~~~GKssl~n~ll~~~~-~~~~~~~---g----tt~~~~~~~~~ 415 (549)
+.+|...+ . ...++++|.+|+|||||+|.|++... ..+.... | +|+.... ..
T Consensus 206 l~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i--~~ 265 (358)
T 2rcn_A 206 LKPLEEAL----T--------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL--YH 265 (358)
T ss_dssp HHHHHHHH----T--------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE--EE
T ss_pred HHHHHHhc----C--------------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE--EE
Confidence 98876543 1 23689999999999999999998654 4333322 2 2332222 11
Q ss_pred ccCCCeEEEEeCCCccchh
Q 008909 416 GPEGQKFRLIDTAGIRKRA 434 (549)
Q Consensus 416 ~~~~~~i~l~DTpG~~~~~ 434 (549)
...+ ..++||||+.++.
T Consensus 266 v~q~--~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 266 FPHG--GDVIDSPGVREFG 282 (358)
T ss_dssp CTTS--CEEEECHHHHTCC
T ss_pred ECCC--CEecCcccHHHhh
Confidence 2222 3679999997754
No 400
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=7e-11 Score=121.94 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCC------ccccceeeee--eeCC--ceEEEEEcccccccCCCCcchh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG------VTRDRMYGRS--FWGE--HEFMLVDTGGVLNVSKSQPNIM 232 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~------~t~~~~~~~~--~~~~--~~~~liDTpG~~~~~~~~~~~~ 232 (549)
...|+|+|.+|+|||||+|.|+|......+ ..+ .|.......+ ...+ ..+.+|||||+........ ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~-~~ 108 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN-CW 108 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC------------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh-hH
Confidence 467899999999999999999987532221 111 1111111111 1122 2578999999975321100 00
Q ss_pred hhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHH-----------Hhhh--ccEEEEEEeCC-CCCCcchHHHHHHHH
Q 008909 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATA-----------AIEE--SCVIIFLVDGQ-AGLTAADEEIADWLR 298 (549)
Q Consensus 233 ~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~-----------~i~~--~d~illVvD~~-~~~~~~~~~~~~~l~ 298 (549)
. . +...+...+.. .+.. ++++|++++.+ +++...+..++..+.
T Consensus 109 ~----------------~-------i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 109 Q----------------P-------VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 165 (418)
T ss_dssp H----------------H-------HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT
T ss_pred H----------------H-------HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh
Confidence 0 0 11111111111 1222 44566666654 567666655665554
Q ss_pred HccCCCeEEEEeccCCCChhhHHhH------HHHHHcCCCceEeeccCCCChhhhHHHHHH
Q 008909 299 KNYMDKFIILAVNKCESPRKGIMQV------SEFWSLGFSPLPISAISGTGTGELLDLVCS 353 (549)
Q Consensus 299 ~~~~~~p~ivv~NK~D~~~~~~~~~------~~~~~~~~~~v~vSA~~g~gi~~L~~~i~~ 353 (549)
.+.|+|+|+||+|+........ ......+++++.+||.++.++.+++..+..
T Consensus 166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 3789999999999876432221 112234778999999999998876555543
No 401
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=1.9e-10 Score=117.49 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=71.5
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC----------------CCeEEEEeCCCccc
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRK 432 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~----------------~~~i~l~DTpG~~~ 432 (549)
.+...++++|.+|+|||||+|.+++.....+.+.|++|++...+.+...+ +..+.+|||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 34568999999999999999999998755788999999998777665432 13689999999965
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~ 469 (549)
..+. ........+..++.+|++++|+|+.+
T Consensus 98 ~~s~-------~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GAST-------GVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCS-------SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcH-------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3221 11122345667899999999999864
No 402
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.10 E-value=1.8e-11 Score=124.98 Aligned_cols=146 Identities=20% Similarity=0.164 Sum_probs=91.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCC-----CceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhh
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGG-----NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~ 238 (549)
.+|+++|.+|+|||||+|+|++. ....+++.+|+|.......+ +..+.++||||+.......+.+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~----- 234 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDA----- 234 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCT-----
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHhH-----
Confidence 47999999999999999999986 45778899999988765432 334899999999764322211111
Q ss_pred hcccccCCchhhHHHHHhhchHHHHHHHHHHh---hhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCC
Q 008909 239 TTIGMEGIPLATREAAVARMPSMIERQATAAI---EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (549)
Q Consensus 239 ~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i---~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~ 315 (549)
.....+ ...+.++++++....+.......+.++.. .+.|+++++||+|.
T Consensus 235 --------------------------~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~ 286 (369)
T 3ec1_A 235 --------------------------RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELT 286 (369)
T ss_dssp --------------------------TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSC
T ss_pred --------------------------HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcc
Confidence 111222 56899999999743211111111222332 36899999999998
Q ss_pred ChhhH-HhHHHH--HHcCCCceEeeccCCCChh
Q 008909 316 PRKGI-MQVSEF--WSLGFSPLPISAISGTGTG 345 (549)
Q Consensus 316 ~~~~~-~~~~~~--~~~~~~~v~vSA~~g~gi~ 345 (549)
..... .....+ ...+..+.+.++....++.
T Consensus 287 ~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 287 VHRTKLEKADSLYANQLGELLSPPSKRYAAEFP 319 (369)
T ss_dssp EEEEEGGGHHHHHHHHBTTTBCSSCGGGTTTCC
T ss_pred cccccHHHHHHHHHHhcCCccCCCCchhhhhcc
Confidence 65322 112222 2345566666666555543
No 403
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.04 E-value=3.2e-10 Score=115.49 Aligned_cols=93 Identities=26% Similarity=0.277 Sum_probs=54.6
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEeccC----------------CCeEEEEeCCCccc
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRK 432 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~~~~----------------~~~i~l~DTpG~~~ 432 (549)
.+..+++++|.+|+|||||+|++++... .+.+.|++|++.....+...+ ...+.+|||||+.+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3456899999999999999999998764 788899999988776665432 23599999999976
Q ss_pred hhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc
Q 008909 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (549)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~ 469 (549)
+.+. ........+.+++.+|++++|+|+++
T Consensus 99 ~as~-------~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHN-------GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ---------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccch-------hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 4321 11112245678899999999999975
No 404
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.04 E-value=2.7e-10 Score=108.01 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=49.5
Q ss_pred CCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhc-CCCCCEEEEccccCCC
Q 008909 458 SDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA-LDWAPIVYSTAIAGQS 536 (549)
Q Consensus 458 ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~iSA~~g~~ 536 (549)
.+..+.|+|+..+..... ......+.|.++|+||+|+....... ...+.+.+.. ....+++++||++|.|
T Consensus 140 ~~~~~~v~~~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~g 210 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIE----KHPGIMKTADLIVINKIDLADAVGAD-----IKKMENDAKRINPDAEVVLLSLKTMEG 210 (226)
T ss_dssp CSEEEEEEEGGGCTTTTT----TCHHHHTTCSEEEEECGGGHHHHTCC-----HHHHHHHHHHHCTTSEEEECCTTTCTT
T ss_pred cCcEEEEEecCcchhhHh----hhhhHhhcCCEEEEeccccCchhHHH-----HHHHHHHHHHhCCCCeEEEEEecCCCC
Confidence 345567777643221110 01112468899999999986421111 1222233332 2346899999999999
Q ss_pred HHHHHHHHHhhh
Q 008909 537 VDKYVLYLATSF 548 (549)
Q Consensus 537 v~~L~~~l~~~~ 548 (549)
+++||++|.+.+
T Consensus 211 v~~l~~~l~~~~ 222 (226)
T 2hf9_A 211 FDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997654
No 405
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.03 E-value=2.2e-10 Score=108.60 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=39.2
Q ss_pred CCeEEEEeccCCCChhh---HHhHHHHH---HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 303 DKFIILAVNKCESPRKG---IMQVSEFW---SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 303 ~~p~ivv~NK~D~~~~~---~~~~~~~~---~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+.|.++|+||+|+.... ......+. ..+.+++++||++|.|+.++++.+.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 57889999999986532 11222222 12457899999999999999999877664
No 406
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.01 E-value=2.6e-10 Score=116.12 Aligned_cols=90 Identities=24% Similarity=0.262 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc-----------------eEEEEEcccccccC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVS 225 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~ 225 (549)
..+|+|+|.+|||||||+|+|++... .++++|++|.+...+.+.+.+. .+.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 56899999999999999999998864 7888999999998888877552 48999999997643
Q ss_pred CCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCC
Q 008909 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (549)
Q Consensus 226 ~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~ 284 (549)
..... +...+..++..+|++++|+|+..
T Consensus 101 s~~~g-------------------------------lg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 101 HNGQG-------------------------------LGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------------------------------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred chhhH-------------------------------HHHHHHHHHHhcCeEEEEEecCC
Confidence 21111 12245678899999999999864
No 407
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.00 E-value=3.3e-10 Score=114.54 Aligned_cols=116 Identities=11% Similarity=0.129 Sum_probs=77.9
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-----------CHhHHHHHHHHHH--
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-----------TEQDCRIAERIEQ-- 484 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-----------~~~~~~~l~~l~~-- 484 (549)
++..+.+|||+|++++.... ..+++++|++|+|+|+++.. -.+...++..+..
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w--------------~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKW--------------IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGG--------------GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred CCeeEEEEeCCCchhhhHHH--------------HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 46789999999998765422 12679999999999999731 1233345666655
Q ss_pred --hCCcEEEEEecccCCCCCc--------------hhhhHHHHHHHHHHHhcC------CCCCEEEEccccCCCHHHHHH
Q 008909 485 --EGKGCLIVVNKWDTIPNKN--------------QQTATYYEQDVREKLRAL------DWAPIVYSTAIAGQSVDKYVL 542 (549)
Q Consensus 485 --~~~p~ivv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~l~~~------~~~~~i~iSA~~g~~v~~L~~ 542 (549)
.+.|+|||+||+|+...+. ....++..+.+...+... ....+++|||++|.||+++|.
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 3689999999999852110 011122223333332222 345789999999999999999
Q ss_pred HHHhh
Q 008909 543 YLATS 547 (549)
Q Consensus 543 ~l~~~ 547 (549)
++.+.
T Consensus 337 ~v~~~ 341 (353)
T 1cip_A 337 AVTDV 341 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 408
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=2.6e-11 Score=123.78 Aligned_cols=142 Identities=19% Similarity=0.184 Sum_probs=82.3
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC------ceeeecCCCccccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhh
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN------RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
.+|+++|.+|+|||||+|+|++.. ...++..+++|.......+ +..+.++||||+.+.....+.+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~---- 233 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVGK---- 233 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTSGGGGSCH----
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcHHHHHHHhhH----
Confidence 579999999999999999999752 4567899999988766443 223899999999764322111110
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHH--hhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCC
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~--i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~ 315 (549)
...... ....+.++++++............+.++.. .+.|+++++||+|.
T Consensus 234 --------------------------~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~ 285 (368)
T 3h2y_A 234 --------------------------QSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLT 285 (368)
T ss_dssp --------------------------HHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSC
T ss_pred --------------------------HHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccc
Confidence 011111 245788999998743211111111222332 36899999999998
Q ss_pred ChhhHHh-HHHH--HHcCCCceEeeccC
Q 008909 316 PRKGIMQ-VSEF--WSLGFSPLPISAIS 340 (549)
Q Consensus 316 ~~~~~~~-~~~~--~~~~~~~v~vSA~~ 340 (549)
....... .... ...|..+.|.++..
T Consensus 286 ~~~~~~~~~~~~~~~~~g~~l~p~~~~~ 313 (368)
T 3h2y_A 286 IHRTKLEKADELYKNHAGDLLSPPTPEE 313 (368)
T ss_dssp EEEEEHHHHHHHHHHHBTTTBCSSCHHH
T ss_pred cccccHHHHHHHHHHHhCCccCCCchhh
Confidence 7543222 2222 23454555555543
No 409
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=1.3e-09 Score=108.24 Aligned_cols=105 Identities=17% Similarity=0.217 Sum_probs=75.5
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccC-CHhH-HHHHHHHHHhCCcEEEEEeccc
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQD-CRIAERIEQEGKGCLIVVNKWD 497 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~-~~~l~~l~~~~~p~ivv~NK~D 497 (549)
.++.+||| +.++..+.. .+++++|++|+|+|++++. +... .+|+..+...++|++||+||+|
T Consensus 63 ~~~~iwD~--qer~~~l~~--------------~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~D 126 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTK--------------PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMD 126 (301)
T ss_dssp SSEEEEEE--CCCSCEETT--------------TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGG
T ss_pred CeEEEEEE--ccccceeec--------------cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHH
Confidence 47999999 776654321 2689999999999999875 4443 3466677777899999999999
Q ss_pred CCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHHHHHHHh
Q 008909 498 TIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKYVLYLAT 546 (549)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~ 546 (549)
+...... ++ ...+.+.+... .+++++||++|.||+++|..+..
T Consensus 127 L~~~~~v---~~-~~~~~~~~~~~--~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 127 LYDEDDL---RK-VRELEEIYSGL--YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp GCCHHHH---HH-HHHHHHHHTTT--SCEEECCTTTCTTHHHHHHHHSS
T ss_pred cCCchhH---HH-HHHHHHHHhhh--CcEEEEECCCCcCHHHHHHHhcC
Confidence 9753221 11 12222333332 58999999999999999998753
No 410
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.91 E-value=2.4e-09 Score=112.81 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=93.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHh------cCCCeeecCC---CCc--------e---eeeeEEEE------------e--
Q 008909 370 RIPAIAIVGRPNVGKSSILNALV------GEDRTIVSPI---SGT--------T---RDAIDTEF------------T-- 415 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll------~~~~~~~~~~---~gt--------t---~~~~~~~~------------~-- 415 (549)
....|+++|.+|+||||+++.|+ |.++..+..- ++. + ...+.... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998 6554443321 111 0 01000000 0
Q ss_pred ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcE-EEEEe
Q 008909 416 GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGC-LIVVN 494 (549)
Q Consensus 416 ~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~-ivv~N 494 (549)
.+++..++||||||...... .. ...+..... +-.+|.+++|+|++.+.. ....+..+.+. .|+ ++|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~------~l-~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED------SL-FEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH------HH-HHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccch------hH-HHHHHHHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence 01566899999999854210 00 111222222 338999999999987643 34444545443 674 88999
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHhc--------------CCCCCEEEEccccCCC-HHHHHHHHHhh
Q 008909 495 KWDTIPNKNQQTATYYEQDVREKLRA--------------LDWAPIVYSTAIAGQS-VDKYVLYLATS 547 (549)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~~i~iSA~~g~~-v~~L~~~l~~~ 547 (549)
|+|........ .. +.+.+.. ..+.+++++|++.|.| +.+|++++.+.
T Consensus 249 K~D~~~~~g~~-----l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGGA-----LS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTHH-----HH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHHH-----HH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99987433211 11 1111110 1123456689999999 99999998754
No 411
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.91 E-value=5.1e-09 Score=110.34 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=91.1
Q ss_pred CCCeEEEEcCCCCchhhHHHhhh------CCCceeeecCCCcc--------------ccceee---------------ee
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT--------------RDRMYG---------------RS 206 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t--------------~~~~~~---------------~~ 206 (549)
....|+++|++||||||++++|. |.+...+..-+... ..+... ..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998 76655544322110 000000 01
Q ss_pred eeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCC
Q 008909 207 FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL 286 (549)
Q Consensus 207 ~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~ 286 (549)
.+.+..+.||||||.... ...++.++ .. +.. +..+|.+++|+|+..+.
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el---------------------------~~-~~~-~i~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEM---------------------------LQ-VAN-AIQPDNIVYVMDASIGQ 227 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHH---------------------------HH-HHH-HHCCSEEEEEEETTCCT
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHH---------------------------HH-HHh-hhcCceEEEEEeccccc
Confidence 126778999999998641 11111111 11 111 23789999999998764
Q ss_pred CcchHHHHHHHHHccCCCeE-EEEeccCCCChhhHHhHHHHHHcCCC------------------ceEeeccCCCC-hhh
Q 008909 287 TAADEEIADWLRKNYMDKFI-ILAVNKCESPRKGIMQVSEFWSLGFS------------------PLPISAISGTG-TGE 346 (549)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~p~-ivv~NK~D~~~~~~~~~~~~~~~~~~------------------~v~vSA~~g~g-i~~ 346 (549)
. .......+.. ..|+ .+|+||+|...............+.| .+++|+..|.| +.+
T Consensus 228 ~--~~~~a~~~~~---~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~ 302 (504)
T 2j37_W 228 A--CEAQAKAFKD---KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEG 302 (504)
T ss_dssp T--HHHHHHHHHH---HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTT
T ss_pred c--HHHHHHHHHh---hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHH
Confidence 3 3333333433 2564 88999999874322111111122222 34579999999 999
Q ss_pred hHHHHHHH
Q 008909 347 LLDLVCSE 354 (549)
Q Consensus 347 L~~~i~~~ 354 (549)
|++.+.+.
T Consensus 303 Lie~i~e~ 310 (504)
T 2j37_W 303 LIDKVNEL 310 (504)
T ss_dssp THHHHTTT
T ss_pred HHHHHHHH
Confidence 99888654
No 412
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=3.1e-09 Score=108.54 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCC-----------------ceEEEEEcccccccC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~ 225 (549)
..+|+|+|.+|||||||+|+|++...+.++++|++|..+..+.+.+.+ ..+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 578999999999999999999998755788999999999999988876 357999999987543
Q ss_pred CCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCC
Q 008909 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (549)
Q Consensus 226 ~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~ 284 (549)
...+.+ ...+...+..+|.+++|+|+..
T Consensus 100 s~~e~L-------------------------------~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGL-------------------------------GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSS-------------------------------CHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHH-------------------------------HHHHHHHHHHHHHHHHHHhccc
Confidence 322211 1245567788999999999754
No 413
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.88 E-value=1.4e-09 Score=110.36 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcccc----------CC-HhHHHHHHHHHHh-
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC----------IT-EQDCRIAERIEQE- 485 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~----------~~-~~~~~~l~~l~~~- 485 (549)
++..+.+|||+|++++.... ..++++++++|+|+|+++. -. .+...++..+...
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w--------------~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRW--------------FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp TTEEEEEEEECC-------C--------------TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred CCeEEEEEeccchhhhhhhH--------------HHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 56789999999997754321 2257899999999999972 11 2233456666543
Q ss_pred ---CCcEEEEEecccCCCCC---------------chhhhHHHHHHHHHHHhc------CCCCCEEEEccccCCCHHHHH
Q 008909 486 ---GKGCLIVVNKWDTIPNK---------------NQQTATYYEQDVREKLRA------LDWAPIVYSTAIAGQSVDKYV 541 (549)
Q Consensus 486 ---~~p~ivv~NK~Dl~~~~---------------~~~~~~~~~~~~~~~l~~------~~~~~~i~iSA~~g~~v~~L~ 541 (549)
+.|+|||+||+|+...+ .....++..+.+...+.. .....++++||++|.||+++|
T Consensus 265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 68999999999985311 001112222223233222 123568899999999999999
Q ss_pred HHHHhh
Q 008909 542 LYLATS 547 (549)
Q Consensus 542 ~~l~~~ 547 (549)
..+.+.
T Consensus 345 ~~v~~~ 350 (362)
T 1zcb_A 345 RDVKDT 350 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 414
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=6.9e-09 Score=106.57 Aligned_cols=153 Identities=13% Similarity=0.183 Sum_probs=88.6
Q ss_pred eEEEeCCCCCChhHHHHHHhcCCCee---ecCCCCceeeeeEEEEeccCC--CeEEEEeCCCccchhhhccCCChhhhhH
Q 008909 373 AIAIVGRPNVGKSSILNALVGEDRTI---VSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (549)
Q Consensus 373 ~v~~~G~~~~GKssl~n~ll~~~~~~---~~~~~gtt~~~~~~~~~~~~~--~~i~l~DTpG~~~~~~~~~~~~~~e~~~ 447 (549)
+++++|.+|+|||||+|.++|..... ....++.++..+...+.. .+ ..+.++|+||+............+..+.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-CccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 49999999999999999999864211 112345555433322221 12 2689999999864211000000111111
Q ss_pred HH---HHHHHH---h-------c--CC-cEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHH
Q 008909 448 VN---RAFRAI---R-------R--SD-VVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (549)
Q Consensus 448 ~~---~~~~~~---~-------~--ad-~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 511 (549)
.. .++..+ + . .| +++||+|+.++++..+..+++.+. .+.|+|+|+||+|.+.... ...+.
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E---~~~l~ 198 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSE---LTKFK 198 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHH---HHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHH---HHHHH
Confidence 11 122221 1 1 23 467788998899999998888887 7899999999999886433 23445
Q ss_pred HHHHHHHhcCCCCCEEEEcc
Q 008909 512 QDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 512 ~~~~~~l~~~~~~~~i~iSA 531 (549)
..+.+.+.. .+.+++++|.
T Consensus 199 ~~I~~~L~~-~gi~I~~is~ 217 (427)
T 2qag_B 199 IKITSELVS-NGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHBT-TBCCCCCCC-
T ss_pred HHHHHHHHH-cCCcEEecCC
Confidence 566666665 3467777774
No 415
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.87 E-value=1.9e-09 Score=110.26 Aligned_cols=116 Identities=11% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc----------cCCH-hHHHHHHHHHHh-
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA----------CITE-QDCRIAERIEQE- 485 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~----------~~~~-~~~~~l~~l~~~- 485 (549)
++..+.+|||+|++++..+. ..++++++++|+|+|+++ .-+. +...|+..+...
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w--------------~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKW--------------IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGG--------------GGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred CCccceecccchhhhhhhhh--------------HhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 46789999999998875432 126799999999999987 3222 233466666543
Q ss_pred ---CCcEEEEEecccCCCCCc---h--------------------------hhhHHHHHHHHHHHhcC--------CCCC
Q 008909 486 ---GKGCLIVVNKWDTIPNKN---Q--------------------------QTATYYEQDVREKLRAL--------DWAP 525 (549)
Q Consensus 486 ---~~p~ivv~NK~Dl~~~~~---~--------------------------~~~~~~~~~~~~~l~~~--------~~~~ 525 (549)
+.|+|||+||+|+...+. . ...+.....+...+... ....
T Consensus 281 ~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~ 360 (402)
T 1azs_C 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY 360 (402)
T ss_dssp TCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEE
T ss_pred cCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccE
Confidence 689999999999843211 0 00111111222222111 2345
Q ss_pred EEEEccccCCCHHHHHHHHHhh
Q 008909 526 IVYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 526 ~i~iSA~~g~~v~~L~~~l~~~ 547 (549)
++++||+++.||+++|..+...
T Consensus 361 ~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 361 PHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp EEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEeecCcCHHHHHHHHHHH
Confidence 7789999999999999988764
No 416
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=6.2e-09 Score=106.93 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=81.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCcee--e-ecCCCccccceeeeeeeCC--ceEEEEEcccccccCCCCcchhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--V-VDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~--~-~~~~~~t~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
.+.++|+|.+|+|||||+|.|+|..... . ...++.+...........+ ..+.++|++|+...... ..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~-~~------- 113 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINK-ED------- 113 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCH-HH-------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcccc-ch-------
Confidence 4559999999999999999999874211 1 1123333222111112222 26899999998642110 00
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHH---------hhhc--c-EEEEEEeCCCCCCcchHHHHHHHHHccCCCe
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAA---------IEES--C-VIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~---------i~~~--d-~illVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (549)
.+..+... +...+...+... +..+ | +++||+|+.+++...+.++.+.|. .+.|
T Consensus 114 ---------~~~~i~~~---i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~ 178 (427)
T 2qag_B 114 ---------SYKPIVEF---IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVN 178 (427)
T ss_dssp ---------HSHHHHHH---HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSE
T ss_pred ---------hhhHHHHH---HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCC
Confidence 00011111 111111111111 1122 2 477888988888888877777775 3789
Q ss_pred EEEEeccCCCChhhHHhH-----HH-HHHcCCCceEeec
Q 008909 306 IILAVNKCESPRKGIMQV-----SE-FWSLGFSPLPISA 338 (549)
Q Consensus 306 ~ivv~NK~D~~~~~~~~~-----~~-~~~~~~~~v~vSA 338 (549)
+|+|+||+|......... .. +...|.+++.+|.
T Consensus 179 vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 179 IIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 999999999876433221 11 2234667787775
No 417
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.86 E-value=1.7e-09 Score=109.30 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcc----------ccCC-HhHHHHHHHHHH---
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM----------ACIT-EQDCRIAERIEQ--- 484 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~----------~~~~-~~~~~~l~~l~~--- 484 (549)
...+.+|||+|++++..+. ..+++++|++|+|+|++ +.-+ .+...++..+..
T Consensus 182 ~v~l~iwDtaGQe~~r~~~--------------~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~ 247 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKW--------------IHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247 (354)
T ss_dssp --EEEEEEECCSTTGGGGT--------------GGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred ceeeEEEECCCchhhhHHH--------------HHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc
Confidence 4679999999998865432 12679999999999998 2212 223345565654
Q ss_pred -hCCcEEEEEecccCCCCCchh--------------------hhHHHHHHHHHHHhc-----------CCCCCEEEEccc
Q 008909 485 -EGKGCLIVVNKWDTIPNKNQQ--------------------TATYYEQDVREKLRA-----------LDWAPIVYSTAI 532 (549)
Q Consensus 485 -~~~p~ivv~NK~Dl~~~~~~~--------------------~~~~~~~~~~~~l~~-----------~~~~~~i~iSA~ 532 (549)
.+.|+|||+||+|+...+... ..++..+.+.+.+.. .....+++|||+
T Consensus 248 ~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~ 327 (354)
T 2xtz_A 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTAL 327 (354)
T ss_dssp GSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTT
T ss_pred cCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEee
Confidence 368999999999984321100 011112222222211 112346899999
Q ss_pred cCCCHHHHHHHHHhh
Q 008909 533 AGQSVDKYVLYLATS 547 (549)
Q Consensus 533 ~g~~v~~L~~~l~~~ 547 (549)
++.||+++|+.+.+.
T Consensus 328 d~~nV~~vF~~v~~~ 342 (354)
T 2xtz_A 328 DQKLVKKTFKLVDET 342 (354)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 999999999998764
No 418
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.84 E-value=1.1e-07 Score=97.66 Aligned_cols=163 Identities=20% Similarity=0.216 Sum_probs=98.3
Q ss_pred cceEEEeCCCCCChhHHHHHHhcCCCeee----cCCCCceeeeeEEEEeccCCCeEEEEeCCCccchhhhccCCChhhhh
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV----SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~~~~~~----~~~~gtt~~~~~~~~~~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~ 446 (549)
...++++|.+|+|||||+|.++|...... .....+|+... .+.......+.++|+||+.... .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~-----------~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN-----------F 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS-----------C
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH-----------H
Confidence 45899999999999999999998422111 11111222211 1111223468999999984310 1
Q ss_pred HHHHHHHH--HhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCC------CCchhhhHHHHHHHHHHH
Q 008909 447 SVNRAFRA--IRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP------NKNQQTATYYEQDVREKL 518 (549)
Q Consensus 447 ~~~~~~~~--~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~------~~~~~~~~~~~~~~~~~l 518 (549)
.....+.. +...+..++ ++... ...+...+.+.+...++|+++|+||.|++- .-.......+.+.+++..
T Consensus 136 ~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 12223332 334455544 66654 577888888888888999999999999751 101111223344444443
Q ss_pred ----hcC--CCCCEEEEcc--ccCCCHHHHHHHHHhhh
Q 008909 519 ----RAL--DWAPIVYSTA--IAGQSVDKYVLYLATSF 548 (549)
Q Consensus 519 ----~~~--~~~~~i~iSA--~~g~~v~~L~~~l~~~~ 548 (549)
... ....+|++|+ +.+.|+++|.+.+.+.+
T Consensus 214 ~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 214 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 222 2457899999 66778999999997654
No 419
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.79 E-value=3.3e-08 Score=96.24 Aligned_cols=146 Identities=19% Similarity=0.230 Sum_probs=84.9
Q ss_pred ceEEEeCCCCCChhHHHHHHhcCCCeeec-------CCCCceeeeeEEEEeccC---CCeEEEEeCCCccchhhhccCCC
Q 008909 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS-------PISGTTRDAIDTEFTGPE---GQKFRLIDTAGIRKRAAIASSGS 441 (549)
Q Consensus 372 ~~v~~~G~~~~GKssl~n~ll~~~~~~~~-------~~~gtt~~~~~~~~~~~~---~~~i~l~DTpG~~~~~~~~~~~~ 441 (549)
.+++++|.+|+|||||+|.++|......+ +.+.++.... ..+...+ ...+.++|+||+...........
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~-i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKA-IGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCE-EEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeee-eEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999984322211 1111211111 1111111 23689999999865321100001
Q ss_pred hhhhhHHHHHHHHH--------------hcCCcEEEEEEcc-ccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhh
Q 008909 442 TTEALSVNRAFRAI--------------RRSDVVALVIEAM-ACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQT 506 (549)
Q Consensus 442 ~~e~~~~~~~~~~~--------------~~ad~~llVvD~~-~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~ 506 (549)
....+........+ ..+++.++++|.. +++...+..+++.+.+. .++|+|+||+|.+....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e--- 157 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEE--- 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHH---
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHH---
Confidence 12222222222221 2369999999954 78999999999999887 99999999999886433
Q ss_pred hHHHHHHHHHHHhcCC
Q 008909 507 ATYYEQDVREKLRALD 522 (549)
Q Consensus 507 ~~~~~~~~~~~l~~~~ 522 (549)
...+...+.+.+...+
T Consensus 158 ~~~~k~~i~~~l~~~~ 173 (270)
T 3sop_A 158 KSEFKQRVRKELEVNG 173 (270)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2234455665565543
No 420
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.78 E-value=7.1e-09 Score=103.24 Aligned_cols=116 Identities=13% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEcc-------ccCC----HhHHHHHHHHHH--
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM-------ACIT----EQDCRIAERIEQ-- 484 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~-------~~~~----~~~~~~l~~l~~-- 484 (549)
++.++.+|||+|++++..+. ..++++++++|+|+|++ +.-. .+...++..+..
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w--------------~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKW--------------IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTG--------------GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred eceeeEEEEcCCchhHHHHH--------------HHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 56789999999998765432 22679999999999886 2111 223345565554
Q ss_pred --hCCcEEEEEecccCCCCCc---------------hhhhHHHHHHHHHHHhcC-----CCCCEEEEccccCCCHHHHHH
Q 008909 485 --EGKGCLIVVNKWDTIPNKN---------------QQTATYYEQDVREKLRAL-----DWAPIVYSTAIAGQSVDKYVL 542 (549)
Q Consensus 485 --~~~p~ivv~NK~Dl~~~~~---------------~~~~~~~~~~~~~~l~~~-----~~~~~i~iSA~~g~~v~~L~~ 542 (549)
.+.|+++++||+|+...+- ....++..+.+...+... ....++++||+++.||+.+|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 3689999999999854220 011122233334444322 234578899999999999999
Q ss_pred HHHhh
Q 008909 543 YLATS 547 (549)
Q Consensus 543 ~l~~~ 547 (549)
.+...
T Consensus 311 ~v~~~ 315 (327)
T 3ohm_A 311 AVKDT 315 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 421
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.74 E-value=6.7e-08 Score=99.31 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=91.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCc----eeeecCCCccccceeeeeeeC-CceEEEEEcccccccCCCCcchhhhhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNR----AIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~----~~~~~~~~~t~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~i~~ 237 (549)
...|+|+|++|+|||||+|.|+|... ........+|+.... .... ...+.++|+||+..... .+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~q~~~~~~ltv~D~~g~~~~~~---~~------ 137 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGSTNF---PP------ 137 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGGSSC---CH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--ccccccCCeeehHhhcccchHH---HH------
Confidence 45799999999999999999998421 111111112221111 1111 23688999999853111 00
Q ss_pred hhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCC-
Q 008909 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP- 316 (549)
Q Consensus 238 ~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~- 316 (549)
...+.. ..+...+..++ ++... ...+...+...+... ++|+++|+||.|+.
T Consensus 138 ---------------------~~~L~~---~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~--~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 138 ---------------------DTYLEK---MKFYEYDFFII-ISATR-FKKNDIDIAKAISMM--KKEFYFVRTKVDSDI 189 (413)
T ss_dssp ---------------------HHHHHH---TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT--TCEEEEEECCHHHHH
T ss_pred ---------------------HHHHHH---cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc--CCCeEEEEecCcccc
Confidence 000100 12334455555 77654 456666677777665 78999999999853
Q ss_pred ------------hhhHHhHH-HHH-----HcC---CCceEeec--cCCCChhhhHHHHHHHhhhhc
Q 008909 317 ------------RKGIMQVS-EFW-----SLG---FSPLPISA--ISGTGTGELLDLVCSELKKVE 359 (549)
Q Consensus 317 ------------~~~~~~~~-~~~-----~~~---~~~v~vSA--~~g~gi~~L~~~i~~~l~~~~ 359 (549)
........ .+. ..+ ..++++|+ ..+.|++++.+.+...++...
T Consensus 190 LDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 11111111 121 222 25689999 566679999999988886544
No 422
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.73 E-value=7.7e-09 Score=103.36 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=77.7
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccc----------cC-CHhHHHHHHHHHH--
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA----------CI-TEQDCRIAERIEQ-- 484 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~----------~~-~~~~~~~l~~l~~-- 484 (549)
++..+.+|||+|++++.. ....++++++++|+|+|+++ .- ..+...++..+..
T Consensus 159 ~~v~l~iwDtaGQe~~R~--------------~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERK--------------XWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp SSCEEEEEECCSCHHHHH--------------HHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred eeeeeccccCCCcccccc--------------cHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 578999999999976533 22336799999999999982 11 1233445665554
Q ss_pred --hCCcEEEEEecccCCCCCc--------------hhhhHHHHHHHHHHH------hcC----------------CCCCE
Q 008909 485 --EGKGCLIVVNKWDTIPNKN--------------QQTATYYEQDVREKL------RAL----------------DWAPI 526 (549)
Q Consensus 485 --~~~p~ivv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~l------~~~----------------~~~~~ 526 (549)
.+.|++|++||+|+...+. ....++..+.+.+.+ ... ....+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 3689999999999853210 001223334455555 111 12467
Q ss_pred EEEccccCCCHHHHHHHHHhh
Q 008909 527 VYSTAIAGQSVDKYVLYLATS 547 (549)
Q Consensus 527 i~iSA~~g~~v~~L~~~l~~~ 547 (549)
+++||+++.||..+|..+...
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~ 325 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDV 325 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHH
Confidence 899999999999999988764
No 423
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.70 E-value=7.5e-08 Score=93.73 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=73.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeee-------cCCCccccceeeeee-eCC--ceEEEEEcccccccCCCCcchhh
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV-------DEPGVTRDRMYGRSF-WGE--HEFMLVDTGGVLNVSKSQPNIME 233 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~-------~~~~~t~~~~~~~~~-~~~--~~~~liDTpG~~~~~~~~~~~~~ 233 (549)
.+++|+|++|+|||||+|.|+|......+ +.+..+.....+.+. ..+ ..+.++|++|+........ .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-~-- 79 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-C-- 79 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-C--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-H--
Confidence 47899999999999999999976322211 111111111111111 111 3579999999865322110 0
Q ss_pred hhhhhhcccccCCchhhHHHHHhhchHHHHHHHHH----------HhhhccEEEEEEeC-CCCCCcchHHHHHHHHHccC
Q 008909 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATA----------AIEESCVIIFLVDG-QAGLTAADEEIADWLRKNYM 302 (549)
Q Consensus 234 ~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~----------~i~~~d~illVvD~-~~~~~~~~~~~~~~l~~~~~ 302 (549)
.+.+...+. ..+...... .+.++++.++++|. ++++...+.++++.+..
T Consensus 80 --------------~~~i~~~~~---~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--- 139 (270)
T 3sop_A 80 --------------WEPIEKYIN---EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--- 139 (270)
T ss_dssp --------------SHHHHHHHH---HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT---
T ss_pred --------------HHHHHHHHH---HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh---
Confidence 011111111 111111111 23456888999985 47888888777777765
Q ss_pred CCeEEEEeccCCCChhh
Q 008909 303 DKFIILAVNKCESPRKG 319 (549)
Q Consensus 303 ~~p~ivv~NK~D~~~~~ 319 (549)
..++++|+||+|.....
T Consensus 140 ~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 140 VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp TSEEEEEETTGGGSCHH
T ss_pred cCcEEEEEeccccCCHH
Confidence 38999999999987654
No 424
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.64 E-value=4e-08 Score=105.16 Aligned_cols=62 Identities=32% Similarity=0.472 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeee-------CCceEEEEEcccccccC
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-------GEHEFMLVDTGGVLNVS 225 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~liDTpG~~~~~ 225 (549)
...+|+|+|.||+|||||+|+|+|....+ ..+++|..+..+...+ .+..+.++||||+....
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 35789999999999999999999986432 4566666665554432 46789999999997643
No 425
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.59 E-value=4.1e-07 Score=93.88 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=84.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhh------CCCceeeecCCCcc------------ccceee-----------------eee
Q 008909 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT------------RDRMYG-----------------RSF 207 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t------------~~~~~~-----------------~~~ 207 (549)
...|+++|.+|+||||++.+|. |.+...+..-+... ...... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999987 44433333211100 000000 001
Q ss_pred eCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC
Q 008909 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (549)
Q Consensus 208 ~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~ 287 (549)
..+..+.||||||.... ...++.++ .....+..+|.+++|+|++.+.
T Consensus 180 ~~~~DvVIIDTaGrl~~---d~~lm~el-----------------------------~~i~~~~~pd~vlLVvDA~~gq- 226 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE---DKALIEEM-----------------------------KQISNVIHPHEVILVIDGTIGQ- 226 (443)
T ss_dssp HTTCSEEEEECCCCSSC---CHHHHHHH-----------------------------HHHHHHHCCSEEEEEEEGGGGG-
T ss_pred hCCCCEEEEECCCcccc---hHHHHHHH-----------------------------HHHHHhhcCceEEEEEeCCCch-
Confidence 13578999999997431 11122111 1112344579999999987642
Q ss_pred cchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHHHHHHcCCCceEeeccCCCChhhh
Q 008909 288 AADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (549)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L 347 (549)
........+... -.+..+|+||+|...............+.|+..++. |+++++|
T Consensus 227 -~a~~~a~~f~~~--~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 227 -QAYNQALAFKEA--TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp -GHHHHHHHHHHS--CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred -hHHHHHHHHHhh--CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 223333444433 345678999999876543322223346777777775 7777665
No 426
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=8.9e-08 Score=93.83 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEE
Q 008909 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (549)
Q Consensus 448 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 527 (549)
.++..+.+..+|++++|+|++++.+.....+-+.+ .++|.++|+||+|+.+.. . .+...+++...+ .+++
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~---~----~~~~~~~~~~~g-~~~i 83 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAA---V----TQQWKEHFENQG-IRSL 83 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHH---H----HHHHHHHHHTTT-CCEE
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHH---H----HHHHHHHHHhcC-CcEE
Confidence 56778889999999999999998765543333333 579999999999997621 1 223344454433 4899
Q ss_pred EEccccCCCHHHHHHHHHhhh
Q 008909 528 YSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 528 ~iSA~~g~~v~~L~~~l~~~~ 548 (549)
++||++|.|+++|++.+.+++
T Consensus 84 ~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 84 SINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp ECCTTTCTTGGGHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHH
Confidence 999999999999999887653
No 427
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.55 E-value=7.5e-08 Score=95.42 Aligned_cols=88 Identities=18% Similarity=0.112 Sum_probs=65.0
Q ss_pred HHhcCCcEEEEEEccccC-CHhH-HHHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 454 AIRRSDVVALVIEAMACI-TEQD-CRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 454 ~~~~ad~~llVvD~~~~~-~~~~-~~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
+++++|++++|+|++++. +... .+|+..+...++|+++|+||+|+.+..... ..+.+.+.+...+ .+++++||
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~----~~~~~~~~~~~~g-~~~~~~SA 150 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKK----ELERWISIYRDAG-YDVLKVSA 150 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHH----HHHHHHHHHHHTT-CEEEECCT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccH----HHHHHHHHHHHCC-CeEEEEEC
Confidence 589999999999999874 5543 346677777899999999999997532111 0223334444444 48999999
Q ss_pred ccCCCHHHHHHHHHh
Q 008909 532 IAGQSVDKYVLYLAT 546 (549)
Q Consensus 532 ~~g~~v~~L~~~l~~ 546 (549)
++|.|+++|++.+..
T Consensus 151 ~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 151 KTGEGIDELVDYLEG 165 (302)
T ss_dssp TTCTTHHHHHHHTTT
T ss_pred CCCCCHHHHHhhccC
Confidence 999999999988753
No 428
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=2.1e-06 Score=88.57 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=85.5
Q ss_pred ccceEEEeCCCCCChhHHHHHHh------cCCCeeecCCC----------------CceeeeeEE---E-------E--e
Q 008909 370 RIPAIAIVGRPNVGKSSILNALV------GEDRTIVSPIS----------------GTTRDAIDT---E-------F--T 415 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll------~~~~~~~~~~~----------------gtt~~~~~~---~-------~--~ 415 (549)
....|+++|.+|+||||++..|. |.++..+..-+ |........ + + .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999987 33332222111 110000000 0 0 0
Q ss_pred ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEec
Q 008909 416 GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNK 495 (549)
Q Consensus 416 ~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK 495 (549)
...+..++|+||||..... .....-...+..+..+|.+++|+|++.+ .........+.+.-.+..||+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d--------~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED--------KALIEEMKQISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC--------HHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccch--------HHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEEC
Confidence 0134679999999974311 1111111223345578999999999874 33444556666666677889999
Q ss_pred ccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHH
Q 008909 496 WDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKY 540 (549)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L 540 (549)
+|....... +..... ..+.|+.+++. |+++++|
T Consensus 249 lD~~~~gG~---------~ls~~~-~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 249 LDGSAKGGG---------ALSAVA-ATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp CSSCSSHHH---------HHHHHH-TTCCCEEEEEC--SSSTTCE
T ss_pred CCCcccccH---------HHHHHH-HHCCCEEEEEc--CCChHHh
Confidence 998653211 112222 34578888886 7666543
No 429
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.51 E-value=9.8e-08 Score=99.01 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVG 185 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~ 185 (549)
...|+++|.+|+||||++++|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 430
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.47 E-value=2.1e-07 Score=96.44 Aligned_cols=117 Identities=22% Similarity=0.256 Sum_probs=68.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhcC------CCeeecCC------------------------CCceeeeeEE---EEecc
Q 008909 371 IPAIAIVGRPNVGKSSILNALVGE------DRTIVSPI------------------------SGTTRDAIDT---EFTGP 417 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~~------~~~~~~~~------------------------~gtt~~~~~~---~~~~~ 417 (549)
...|+++|.+|+||||+.+.+.+. ++..+..- .+++++.... .+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998762 22222111 1133332110 01112
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHH--HHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCC-c-EEEEE
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA--FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-G-CLIVV 493 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~--~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~-p-~ivv~ 493 (549)
.+..+.|+||||.... ........ ...+-.+|.+++|+|++.+. .....+..+.. .. | ..+|+
T Consensus 179 ~~~D~vIIDT~G~~~~----------~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVl 245 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE----------EKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIV 245 (432)
T ss_dssp SSCSEEEEECCCSCSS----------HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEE
T ss_pred hCCCEEEEcCCCCccc----------cHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEE
Confidence 4567999999998531 11111111 11223689999999998753 22233333332 35 5 88999
Q ss_pred ecccCCC
Q 008909 494 NKWDTIP 500 (549)
Q Consensus 494 NK~Dl~~ 500 (549)
||+|...
T Consensus 246 nK~D~~~ 252 (432)
T 2v3c_C 246 TKLDGSA 252 (432)
T ss_dssp ECSSSCS
T ss_pred eCCCCcc
Confidence 9999864
No 431
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.46 E-value=1.9e-07 Score=94.26 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=80.4
Q ss_pred cccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEE
Q 008909 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (549)
Q Consensus 198 t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~il 277 (549)
|.......+.+++..+.+|||+|...++... ..++..++++|
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w--------------------------------------~~yf~~a~~iI 221 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKW--------------------------------------IHCFEGVTAII 221 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGG--------------------------------------GGGCTTCSEEE
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHH--------------------------------------HHHHhcCCEEE
Confidence 4444555667778899999999987654322 24567899999
Q ss_pred EEEeCCCCCC-------cc-hHHHHHHH---HH--ccCCCeEEEEeccCCCChhh------------------HHhHHHH
Q 008909 278 FLVDGQAGLT-------AA-DEEIADWL---RK--NYMDKFIILAVNKCESPRKG------------------IMQVSEF 326 (549)
Q Consensus 278 lVvD~~~~~~-------~~-~~~~~~~l---~~--~~~~~p~ivv~NK~D~~~~~------------------~~~~~~~ 326 (549)
+|+|.+.... .. -.+...++ .. ...+.|+++++||+|+.... ......+
T Consensus 222 fV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~ 301 (353)
T 1cip_A 222 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY 301 (353)
T ss_dssp EEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHH
T ss_pred EEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHH
Confidence 9999876321 11 12223333 22 23578999999999985322 1122222
Q ss_pred HH------------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 327 WS------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 327 ~~------------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.. .++.++++||+++.|+.+++..+.+.+.
T Consensus 302 ~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 302 IQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 22 2346789999999999999999887764
No 432
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.44 E-value=9.2e-08 Score=92.66 Aligned_cols=58 Identities=38% Similarity=0.575 Sum_probs=39.9
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEEEccccccc
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~~ 224 (549)
.+|+++|.+|+|||||+|+|++.....+++.+|+|...... .+ +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF--SL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE--EC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE--Ee-CCCEEEEECCCcccC
Confidence 68999999999999999999998877788889998877532 22 457899999999753
No 433
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.43 E-value=4.8e-07 Score=96.84 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=65.7
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcCCCeeecCCCCceeeeeEEEEe------ccCCCeEEEEeCCCccchhhhccCCChh
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT------GPEGQKFRLIDTAGIRKRAAIASSGSTT 443 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~~~~~~~~~~gtt~~~~~~~~~------~~~~~~i~l~DTpG~~~~~~~~~~~~~~ 443 (549)
....|+++|.+|+|||||+|+++|..... ..+++|++.....+. ...+..+.|+||||+.+..... ..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~----~~ 110 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGD----NQ 110 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCC----CT
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccc----hh
Confidence 35689999999999999999999976421 455555554443332 2356789999999997643210 00
Q ss_pred hhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHH
Q 008909 444 EALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (549)
Q Consensus 444 e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~ 483 (549)
....+. ++..+ .++ ++|||+..+++.++...+..+.
T Consensus 111 ~~~~~f-ala~l-lss--~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 111 NDSWIF-ALAVL-LSS--TFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp THHHHH-HHHHH-HCS--EEEEEEESCSSHHHHHTTHHHH
T ss_pred HHHHHH-HHHHH-hcC--eEEEECCCCccHHHHHHHHHHH
Confidence 111000 11111 122 6888999899999988665443
No 434
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.40 E-value=5.1e-07 Score=91.47 Aligned_cols=121 Identities=19% Similarity=0.121 Sum_probs=74.0
Q ss_pred cccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEE
Q 008909 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (549)
Q Consensus 198 t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~il 277 (549)
|.......+.+++..+.+|||+|...++... ..++..++++|
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w--------------------------------------~~~f~~~~~iI 229 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRW--------------------------------------FECFDSVTSIL 229 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------C--------------------------------------TTSCTTCCEEE
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhH--------------------------------------HHHhCCCCEEE
Confidence 3344445566778899999999997654422 24567899999
Q ss_pred EEEeCCCCC--------CcchHHHH---HHHHH--ccCCCeEEEEeccCCCChhh-------------------HHhHHH
Q 008909 278 FLVDGQAGL--------TAADEEIA---DWLRK--NYMDKFIILAVNKCESPRKG-------------------IMQVSE 325 (549)
Q Consensus 278 lVvD~~~~~--------~~~~~~~~---~~l~~--~~~~~p~ivv~NK~D~~~~~-------------------~~~~~~ 325 (549)
+|+|.+... ...-.+.. ..+.. ...+.|+++++||+|+.... ......
T Consensus 230 fv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~ 309 (362)
T 1zcb_A 230 FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK 309 (362)
T ss_dssp EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred EEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence 999988631 11111222 22222 23578999999999985321 112222
Q ss_pred HH------------HcCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 326 FW------------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 326 ~~------------~~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
+. ..++.++++||+++.|+.+++..+.+.+.
T Consensus 310 ~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 310 FLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 22 12345788999999999999998887664
No 435
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.39 E-value=1.4e-06 Score=89.89 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhh------CCCceeeecCC----------------Ccccc---cee----------eeee
Q 008909 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEP----------------GVTRD---RMY----------GRSF 207 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~------~~~~~~~~~~~----------------~~t~~---~~~----------~~~~ 207 (549)
...|+++|.+|+||||++..|. |.+...+.... +.... ... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4578999999999999999987 44333222111 10000 000 0011
Q ss_pred eCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC
Q 008909 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (549)
Q Consensus 208 ~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~ 287 (549)
..+..++++||||...... ...++.++ . .+ ..+...+.+++|+|++.+.
T Consensus 177 ~~~~DvvIIDTaGr~~~~~-d~~lm~el---------------------------~-~i-~~~~~pd~vlLVlDa~~gq- 225 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGE-ETKLLEEM---------------------------K-EM-YDVLKPDDVILVIDASIGQ- 225 (433)
T ss_dssp TTTCSEEEEEECCCSSSCC-TTHHHHHH---------------------------H-HH-HHHHCCSEEEEEEEGGGGG-
T ss_pred hcCCCEEEEECCCCccccC-CHHHHHHH---------------------------H-HH-HHhhCCcceEEEEeCccch-
Confidence 2367899999999643111 11222211 0 11 1223568999999987642
Q ss_pred cchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHHHHHHcCCCceEeeccCCCChhhh
Q 008909 288 AADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (549)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L 347 (549)
........+.+. -.+..+++||+|...............+.|+..++. |+++++|
T Consensus 226 -~a~~~a~~f~~~--~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 226 -KAYDLASRFHQA--SPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGT--GEKIDEL 280 (433)
T ss_dssp -GGHHHHHHHHHH--CSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEEC--CSSSSCE
T ss_pred -HHHHHHHHHhcc--cCCcEEEEecccccccchHHHHHHHHHCCCEEEEEC--CCChHhC
Confidence 223344444433 345788999999865433222223345778777775 7777544
No 436
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.25 E-value=2.9e-06 Score=77.75 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=59.7
Q ss_pred HHHHHH-HHhcCCcEEEEEEccccCCHhHHHHHHHH----HH----hCCcEEEEEecc-cCCCCCchhhhHHHHHHHH-H
Q 008909 448 VNRAFR-AIRRSDVVALVIEAMACITEQDCRIAERI----EQ----EGKGCLIVVNKW-DTIPNKNQQTATYYEQDVR-E 516 (549)
Q Consensus 448 ~~~~~~-~~~~ad~~llVvD~~~~~~~~~~~~l~~l----~~----~~~p~ivv~NK~-Dl~~~~~~~~~~~~~~~~~-~ 516 (549)
++..++ |+.++|++|||||+++.-..+...-+..+ .+ .+.|++|++||. |+..+.... ++.+.+. .
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~---EI~e~L~L~ 191 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCF---YLAHELHLN 191 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHH---HHHHHTTGG
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHH---HHHHHcCCc
Confidence 344443 56999999999999885322233333222 22 367999999996 665433221 2222221 1
Q ss_pred HHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 517 KLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 517 ~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+ ...| .+.+|||++|.|+.+-++||.+.+
T Consensus 192 ~l-~R~W-~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 192 LL-NHPW-LVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp GG-CSCE-EEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CC-CCCE-EEEEeECCCCcCHHHHHHHHHHHH
Confidence 12 1233 689999999999999999998754
No 437
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.14 E-value=7.5e-06 Score=80.62 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCCchhhHHHhhh------CCCceeeecCCCcc--------------ccceee---------------eee
Q 008909 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT--------------RDRMYG---------------RSF 207 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t--------------~~~~~~---------------~~~ 207 (549)
...|+++|.+|+||||++..|. |.+...+...+... ...... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4478899999999999999886 33333222221100 000000 001
Q ss_pred eCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCCCCC
Q 008909 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (549)
Q Consensus 208 ~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~~~~ 287 (549)
..++.+.++||||..... ....++.+ +. ....+..+|.+++|+|+..+
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~e---------------------------l~--~i~~~~~~d~vllVvda~~g-- 225 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEE---------------------------MK--NIYEAIKPDEVTLVIDASIG-- 225 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHH---------------------------HH--HHHHHHCCSEEEEEEEGGGG--
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHH---------------------------HH--HHHHHhcCCEEEEEeeCCch--
Confidence 156789999999975410 11111111 00 01234468999999998643
Q ss_pred cchHHHHHHHHHccCCCe-EEEEeccCCCChhhHHhHHHHHHcCCCceEeeccCCCChhhh
Q 008909 288 AADEEIADWLRKNYMDKF-IILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (549)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p-~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L 347 (549)
.......+.+.. ..+ ..+|+||+|..........-....+.|+..++ .|++++++
T Consensus 226 ~~~~~~~~~~~~---~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 226 QKAYDLASKFNQ---ASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGHHHHHHHHHH---TCTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred HHHHHHHHHHHh---hCCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 222223333332 244 67889999976433222222234566776665 57777654
No 438
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.13 E-value=2.9e-06 Score=86.66 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=77.3
Q ss_pred cccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEE
Q 008909 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (549)
Q Consensus 198 t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~il 277 (549)
|.......+.+++..+.+|||+|...++... ..++..++++|
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w--------------------------------------~~yf~~a~~iI 245 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKW--------------------------------------IQCFNDVTAII 245 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGG--------------------------------------GGGTTTCCEEE
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhh--------------------------------------HhhccCCCEEE
Confidence 3334444566778899999999997754422 25577899999
Q ss_pred EEEeCCCC-------CCcch-HHHHHHH---HH--ccCCCeEEEEeccCCCChhhH------------------------
Q 008909 278 FLVDGQAG-------LTAAD-EEIADWL---RK--NYMDKFIILAVNKCESPRKGI------------------------ 320 (549)
Q Consensus 278 lVvD~~~~-------~~~~~-~~~~~~l---~~--~~~~~p~ivv~NK~D~~~~~~------------------------ 320 (549)
+|+|.+.. .+... .++..++ .. ...+.|+++++||+|+.....
T Consensus 246 fV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~ 325 (402)
T 1azs_C 246 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT 325 (402)
T ss_dssp EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCC
T ss_pred EEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccc
Confidence 99998761 00111 1223333 22 235789999999999754322
Q ss_pred ---------HhHHHH-----HH---------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 321 ---------MQVSEF-----WS---------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 321 ---------~~~~~~-----~~---------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
.....+ .. ..+.++.+||+++.||..++..+...+.
T Consensus 326 ~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 326 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence 111111 11 1234568999999999999998877664
No 439
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.13 E-value=1.9e-05 Score=81.44 Aligned_cols=149 Identities=20% Similarity=0.219 Sum_probs=81.8
Q ss_pred ccceEEEeCCCCCChhHHHHHHh------cCCCeeecC----------------CCCceeeeeEE----------EE--e
Q 008909 370 RIPAIAIVGRPNVGKSSILNALV------GEDRTIVSP----------------ISGTTRDAIDT----------EF--T 415 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll------~~~~~~~~~----------------~~gtt~~~~~~----------~~--~ 415 (549)
....++++|.+|+||||++..+. |.++..+.. ..|........ .+ .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35578899999999999999987 333222110 01110000000 00 0
Q ss_pred ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEec
Q 008909 416 GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNK 495 (549)
Q Consensus 416 ~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK 495 (549)
...+..++|+||||...+.. .......+.... ..-.+|.+++|+|+..+ .........+.+.-.+..||+||
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~-----d~~lm~el~~i~-~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTK 247 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGE-----ETKLLEEMKEMY-DVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITK 247 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCC-----TTHHHHHHHHHH-HHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEEC
T ss_pred HhcCCCEEEEECCCCccccC-----CHHHHHHHHHHH-HhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEec
Confidence 01356789999999632100 000111122222 23367999999999864 33444556666666778899999
Q ss_pred ccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHH
Q 008909 496 WDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVD 538 (549)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~ 538 (549)
+|........ . ..... .+.|+.+++. |++++
T Consensus 248 lD~~a~~G~a-----l----s~~~~-~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 248 MDGTAKGGGA-----L----SAVVA-TGATIKFIGT--GEKID 278 (433)
T ss_dssp GGGCSCHHHH-----H----HHHHH-HTCEEEEEEC--CSSSS
T ss_pred ccccccchHH-----H----HHHHH-HCCCEEEEEC--CCChH
Confidence 9986432111 1 11111 2468888886 66654
No 440
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.09 E-value=4.8e-06 Score=82.80 Aligned_cols=122 Identities=19% Similarity=0.126 Sum_probs=78.7
Q ss_pred cccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEE
Q 008909 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (549)
Q Consensus 198 t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~il 277 (549)
|.......+.+++..+.+|||+|...++... ..++..++++|
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w--------------------------------------~~yf~~~~~iI 195 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKW--------------------------------------IHCFENVTSIM 195 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTG--------------------------------------GGGCSSCSEEE
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHHHHH--------------------------------------HHHhCCCCEEE
Confidence 3444555667788899999999997654432 25678899999
Q ss_pred EEEeCC-------CCCCcch-HHHHHHHHH-----ccCCCeEEEEeccCCCChhhH-------------------HhHHH
Q 008909 278 FLVDGQ-------AGLTAAD-EEIADWLRK-----NYMDKFIILAVNKCESPRKGI-------------------MQVSE 325 (549)
Q Consensus 278 lVvD~~-------~~~~~~~-~~~~~~l~~-----~~~~~p~ivv~NK~D~~~~~~-------------------~~~~~ 325 (549)
+|+|.+ +...... .+...++.. ...+.|+++++||+|+..... .....
T Consensus 196 fV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~ 275 (327)
T 3ohm_A 196 FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAARE 275 (327)
T ss_dssp EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHH
T ss_pred EEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHH
Confidence 999765 2111111 123333322 235789999999999754321 11122
Q ss_pred HH-----------HcCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 326 FW-----------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 326 ~~-----------~~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+. ..++.++.+||+.+.++..++..+.+.+.+
T Consensus 276 fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 276 FILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 21 123346789999999999999998877653
No 441
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.08 E-value=4.5e-06 Score=84.19 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=68.3
Q ss_pred CceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEEEEEeCCC-----
Q 008909 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA----- 284 (549)
Q Consensus 210 ~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~illVvD~~~----- 284 (549)
...+.+|||+|...++.... .++..++++|+|+|.+.
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~--------------------------------------~y~~~~~~iI~v~dis~ydq~l 223 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI--------------------------------------HLFEGVTAVIFCAAISEYDQTL 223 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG--------------------------------------GGCTTEEEEEEEEEGGGTTCBC
T ss_pred ceeeEEEECCCchhhhHHHH--------------------------------------HHhCCCCEEEEEEECccccccc
Confidence 35789999999977554322 45678999999999761
Q ss_pred --CCCcch-HHHHHHH---HH--ccCCCeEEEEeccCCCChhhH------------------------HhHHHHHH----
Q 008909 285 --GLTAAD-EEIADWL---RK--NYMDKFIILAVNKCESPRKGI------------------------MQVSEFWS---- 328 (549)
Q Consensus 285 --~~~~~~-~~~~~~l---~~--~~~~~p~ivv~NK~D~~~~~~------------------------~~~~~~~~---- 328 (549)
...... .++..++ .. ...+.|+++++||+|+..... .....+..
T Consensus 224 ~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~ 303 (354)
T 2xtz_A 224 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFE 303 (354)
T ss_dssp SSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHH
Confidence 111111 2222332 22 135789999999999743211 11111211
Q ss_pred -------------cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 329 -------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 329 -------------~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
..+.++++||+++.|+.+++..+.+.+.
T Consensus 304 ~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 304 ELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 1223578999999999999998877664
No 442
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.03 E-value=1.9e-05 Score=85.66 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 161 HLLPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 161 ~~~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-..|.|+|+|.+|+|||||++.|.|..
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 346789999999999999999999863
No 443
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.00 E-value=5.2e-05 Score=69.46 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCcch-HHH---HHHHHHc--cCCCeEEEEeccC-CCChhh-HHhHHHHH-----H
Q 008909 262 IERQATAAIEESCVIIFLVDGQAGLTAAD-EEI---ADWLRKN--YMDKFIILAVNKC-ESPRKG-IMQVSEFW-----S 328 (549)
Q Consensus 262 i~~~~~~~i~~~d~illVvD~~~~~~~~~-~~~---~~~l~~~--~~~~p~ivv~NK~-D~~~~~-~~~~~~~~-----~ 328 (549)
+...+..++.++|.+|||||+.+.-.... .++ ...+... ..+.|++|..||. |+...- ..+....+ .
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~ 194 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 194 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCC
Confidence 33456688899999999999876422222 222 1222221 2578999999996 664321 11111111 2
Q ss_pred cCCCceEeeccCCCChhhhHHHHHHHhh
Q 008909 329 LGFSPLPISAISGTGTGELLDLVCSELK 356 (549)
Q Consensus 329 ~~~~~v~vSA~~g~gi~~L~~~i~~~l~ 356 (549)
..+.+.++||.+|+|+.+-++++...+.
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3456899999999999999999976664
No 444
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=8.8e-05 Score=72.92 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=81.0
Q ss_pred cceEEEeCCCCCChhHHHHHHhc------CCCeeecCCC---Cce-----------eeeeEE------------EEe-c-
Q 008909 371 IPAIAIVGRPNVGKSSILNALVG------EDRTIVSPIS---GTT-----------RDAIDT------------EFT-G- 416 (549)
Q Consensus 371 ~~~v~~~G~~~~GKssl~n~ll~------~~~~~~~~~~---gtt-----------~~~~~~------------~~~-~- 416 (549)
...++++|.+|+||||+...+.+ .++..+..-+ +.. .+.+.. .+. .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45788899999999999998873 2322221111 000 000000 000 0
Q ss_pred cCCCeEEEEeCCCccchhhhccCCChhhhhHHH--HHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEE
Q 008909 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN--RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVV 493 (549)
Q Consensus 417 ~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~--~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~ 493 (549)
.++..++|+||||..... .....+. ..+..+..+|.+++|+|+..+ ......++.+.+ ..+ ..+|+
T Consensus 178 ~~~~D~ViIDTpg~~~~~--------~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVl 246 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG--------EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIII 246 (297)
T ss_dssp HTTCSEEEEECCCSCCTT--------CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEE
T ss_pred hCCCCEEEEeCCCCcccc--------cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEE
Confidence 145579999999985410 0001111 112345579999999999753 333444444444 456 77899
Q ss_pred ecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHH
Q 008909 494 NKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKY 540 (549)
Q Consensus 494 NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L 540 (549)
||+|...... .+..... ..+.|+.+++ +|+++++|
T Consensus 247 nk~D~~~~~g---------~~~~~~~-~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 247 TKMDGTAKGG---------GALSAVA-ATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp ECGGGCTTHH---------HHHHHHH-TTTCCEEEEE--CSSSTTCE
T ss_pred eCCCCCcchH---------HHHHHHH-HHCcCEEEEe--CCCChhhc
Confidence 9999753211 1112222 3456888877 57776554
No 445
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=1.6e-05 Score=76.48 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=60.4
Q ss_pred HHHHHH-HHhcCCcEEEEEEccccCCHhHHHHH----HHHHH----hCCcEEEEEec-ccCCCCCchhhhHHHHHHHH-H
Q 008909 448 VNRAFR-AIRRSDVVALVIEAMACITEQDCRIA----ERIEQ----EGKGCLIVVNK-WDTIPNKNQQTATYYEQDVR-E 516 (549)
Q Consensus 448 ~~~~~~-~~~~ad~~llVvD~~~~~~~~~~~~l----~~l~~----~~~p~ivv~NK-~Dl~~~~~~~~~~~~~~~~~-~ 516 (549)
++..++ |+.++|++|||||++++...+...-+ ..+.+ .+.|++|++|| -|+..+.... ++.+.+. .
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~---EI~e~L~L~ 276 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCF---YLAHELHLN 276 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHH---HHHHHTTGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHH---HHHHHcCCc
Confidence 344444 56999999999999885432222211 22211 47899999997 5775443321 2222221 0
Q ss_pred HHhcCCCCCEEEEccccCCCHHHHHHHHHhhh
Q 008909 517 KLRALDWAPIVYSTAIAGQSVDKYVLYLATSF 548 (549)
Q Consensus 517 ~l~~~~~~~~i~iSA~~g~~v~~L~~~l~~~~ 548 (549)
.+. ..| .+.+|||++|.|+.+-++||.+.+
T Consensus 277 ~l~-r~W-~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 277 LLN-HPW-LVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp GGC-SCE-EEEEEETTTCTTHHHHHHHHHHHS
T ss_pred cCC-CcE-EEEecccCCCcCHHHHHHHHHHHH
Confidence 111 222 689999999999999999998764
No 446
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.90 E-value=8e-05 Score=80.79 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=45.3
Q ss_pred CeEEEEeCCCccchhhhccCCChhhhhHHHHHHHH-Hhc-CCcEEEEEEccccC-CHhHHHHHHHHHHhCCcEEEEEecc
Q 008909 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA-IRR-SDVVALVIEAMACI-TEQDCRIAERIEQEGKGCLIVVNKW 496 (549)
Q Consensus 420 ~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~-~~~-ad~~llVvD~~~~~-~~~~~~~l~~l~~~~~p~ivv~NK~ 496 (549)
..+.++|.||+..... ...+......+...... +.. ..++++|+.+...+ +....+++..+...+.++|+|+||+
T Consensus 147 p~LlLlDePGi~~~~t--~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAV--GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC--------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CceeEeeCCCcccccc--CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 4689999999865321 00111122234444444 333 45666666654433 3334556677767789999999999
Q ss_pred cCCCC
Q 008909 497 DTIPN 501 (549)
Q Consensus 497 Dl~~~ 501 (549)
|++..
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 98754
No 447
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.86 E-value=3e-05 Score=77.35 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=78.2
Q ss_pred cccceeeeeeeCCceEEEEEcccccccCCCCcchhhhhhhhhcccccCCchhhHHHHHhhchHHHHHHHHHHhhhccEEE
Q 008909 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (549)
Q Consensus 198 t~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~i~~~~~~~~~Gi~~~~~~~~i~~~~~~i~~~~~~~i~~~d~il 277 (549)
|.......+.+++..+.+|||+|...++ ..+..++..++++|
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R--------------------------------------~~w~~yy~~a~~iI 189 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSER--------------------------------------KXWVSFFSDVDCAI 189 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHH--------------------------------------HHHHTTSCSCSEEE
T ss_pred eeeeEEEEEEeeeeeeccccCCCccccc--------------------------------------ccHHHHhccCCEEE
Confidence 4555566677788899999999986532 24456778899999
Q ss_pred EEEeCCCC-------CCcc-hHHHHHHH---HH--ccCCCeEEEEeccCCCChhhH------------------HhHHH-
Q 008909 278 FLVDGQAG-------LTAA-DEEIADWL---RK--NYMDKFIILAVNKCESPRKGI------------------MQVSE- 325 (549)
Q Consensus 278 lVvD~~~~-------~~~~-~~~~~~~l---~~--~~~~~p~ivv~NK~D~~~~~~------------------~~~~~- 325 (549)
+|+|.+.. .... -.+...++ .. ...+.|+++++||+|+..... .....
T Consensus 190 fV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~ 269 (340)
T 4fid_A 190 FVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQY 269 (340)
T ss_dssp EEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHH
T ss_pred EEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHH
Confidence 99998721 1111 11222222 22 235789999999999754321 11111
Q ss_pred ---HH------------H------------cCCCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 326 ---FW------------S------------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 326 ---~~------------~------------~~~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
.+ . ..+.++.+||+.+.++..++..+.+.+..
T Consensus 270 i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 270 IQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 11 0 12446789999999999998888776643
No 448
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.83 E-value=1.4e-05 Score=79.70 Aligned_cols=70 Identities=23% Similarity=0.245 Sum_probs=40.5
Q ss_pred hccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCChhhHHhHHHHHHcCCCceEeeccCCCChhhh
Q 008909 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (549)
Q Consensus 272 ~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~~~~~~~~~~~~~~~~~v~vSA~~g~gi~~L 347 (549)
..|..++++|+..+. .-......+.+. ....++++||.|...............+.|+..++ +|++++++
T Consensus 241 ~~de~llvLDa~t~~--~~~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 241 KPNLVIFVGDALAGN--AIVEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CCSEEEEEEEGGGTT--HHHHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred cCCCCEEEEecHHHH--HHHHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 478899999976541 222233333322 22347788999975433222223345577887777 67777654
No 449
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.70 E-value=0.00014 Score=75.38 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLV 184 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~ 184 (549)
...|+++|.+|+||||++..|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999987
No 450
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.61 E-value=3.2e-05 Score=80.04 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCCeEEEEcCCCCchhhHHHhhhCC---------------CceeeecCCCccccceeeeeeeC---------C--ceEEE
Q 008909 162 LLPRVAIVGRPNVGKSALFNRLVGG---------------NRAIVVDEPGVTRDRMYGRSFWG---------E--HEFML 215 (549)
Q Consensus 162 ~~~~I~i~G~~~~GKSsl~n~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~---------~--~~~~l 215 (549)
....|+|+|.+++|||+|+|.|+|. .....+ ..++|..+..|-..+. | ..+++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 3567999999999999999999864 111112 2235555655554442 2 45899
Q ss_pred EEcccccc
Q 008909 216 VDTGGVLN 223 (549)
Q Consensus 216 iDTpG~~~ 223 (549)
+||||+.+
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999865
No 451
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.61 E-value=2.1e-05 Score=77.53 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=59.8
Q ss_pred HHhcCCcEEEEEEccccCCHhHH--HHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEcc
Q 008909 454 AIRRSDVVALVIEAMACITEQDC--RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (549)
Q Consensus 454 ~~~~ad~~llVvD~~~~~~~~~~--~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA 531 (549)
.+.++|.+++|+|+..+...... +.+..+...++|.+||+||+|+.+.... ....+.+.+.+...+. +++++||
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~---~~~~~~~~~~y~~~g~-~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDT---EDTIQAYAEDYRNIGY-DVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHH---HHHHHHHHHHHHHHTC-CEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhh---HHHHHHHHHHHHhCCC-eEEEEec
Confidence 47899999999999976554441 1333344578999999999999865220 0012334444444444 8999999
Q ss_pred ccCCCHHHHHHHH
Q 008909 532 IAGQSVDKYVLYL 544 (549)
Q Consensus 532 ~~g~~v~~L~~~l 544 (549)
++|.|+++|+..+
T Consensus 159 ~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 159 KDQDSLADIIPHF 171 (307)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CCCCCHHHHHhhc
Confidence 9999999887654
No 452
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.55 E-value=0.0013 Score=67.96 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=66.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHh-------cCCCeeecCCC---Cce-----------eeeeEEE------------Ee-
Q 008909 370 RIPAIAIVGRPNVGKSSILNALV-------GEDRTIVSPIS---GTT-----------RDAIDTE------------FT- 415 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll-------~~~~~~~~~~~---gtt-----------~~~~~~~------------~~- 415 (549)
....|+++|.+|+||||+...|. |.++..+..-+ +.. .+.+... +.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578889999999999999987 44433222211 100 0100000 00
Q ss_pred c-cCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCc-EEEEE
Q 008909 416 G-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVV 493 (549)
Q Consensus 416 ~-~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p-~ivv~ 493 (549)
. ..+..++|+||||..... ............+..+|.+++|+|+..+. .....++.+.. ..+ .-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEE
T ss_pred HHhCCCCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEE
Confidence 0 135679999999974321 01111111223355789999999998652 22333333333 234 44689
Q ss_pred ecccCCC
Q 008909 494 NKWDTIP 500 (549)
Q Consensus 494 NK~Dl~~ 500 (549)
||+|...
T Consensus 248 nK~D~~~ 254 (433)
T 2xxa_A 248 TKVDGDA 254 (433)
T ss_dssp ECTTSSS
T ss_pred ecCCCCc
Confidence 9999754
No 453
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.48 E-value=0.00098 Score=65.61 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVG 185 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~ 185 (549)
.-.|+|+|.+|+|||||++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45899999999999999999874
No 454
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.44 E-value=0.00042 Score=72.19 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVG 185 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~ 185 (549)
.-.|+|+|.+|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34799999999999999999875
No 455
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.43 E-value=0.00031 Score=69.21 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchhhHHHhhhC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVG 185 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~ 185 (549)
...|+++|.+|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34789999999999999998864
No 456
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.38 E-value=0.00037 Score=71.72 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVG 185 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~ 185 (549)
...|+++|.+|+||||++..|.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44788999999999999998763
No 457
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.34 E-value=0.00053 Score=68.25 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=79.2
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcC------CCeeec-CC--CCce------eeeeEEEEe------------------
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRTIVS-PI--SGTT------RDAIDTEFT------------------ 415 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~------~~~~~~-~~--~gtt------~~~~~~~~~------------------ 415 (549)
.....++++|.+|+||||+++.+.+. .+.... +. ++.. .......+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 34568999999999999999998862 111110 00 0000 000000000
Q ss_pred -ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEe
Q 008909 416 -GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVN 494 (549)
Q Consensus 416 -~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~N 494 (549)
...+..+.++||+|...... .... .+.... ..-.+|-.++|+|+..+ .+-...++.+.+.....++++|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~-----~l~~--eL~~i~-ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNR-----NLMD--EMKKIA-RVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTT-----CHHH--HHHHHH-HHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEE
T ss_pred HHhccchhhHHhhccchhHHH-----HHHH--HHHHHH-HHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEe
Confidence 01134578899999854211 0111 122222 22357899999998764 3334455555544445567889
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccccCCCHHHH
Q 008909 495 KWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKY 540 (549)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~~g~~v~~L 540 (549)
|+|....... . . ..... .+.|+.+++ +|+++++|
T Consensus 277 KlD~~a~~G~-~----l----~~~~~-~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 277 KLDADARGGA-A----L----SISYV-IDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CGGGCSCCHH-H----H----HHHHH-HTCCEEEEE--CSSSTTCE
T ss_pred CcCCccchhH-H----H----HHHHH-HCCCEEEEe--CCCCcccc
Confidence 9997432211 1 1 11111 136888888 67766543
No 458
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.33 E-value=0.0012 Score=66.37 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEE--EEcc------c-ccccCCCCcchhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFML--VDTG------G-VLNVSKSQPNIME 233 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l--iDTp------G-~~~~~~~~~~~~~ 233 (549)
--.++|+|++|+|||||++.|.|-... ..+.+.++|..+.- .+.| | +++.... +...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p------------~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l--~p~l 95 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQP------------DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL--FPHL 95 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCC------------SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC--CTTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC------------CCcEEEECCEECcccccccchhhCCEEEEeCCCcC--CCCC
Confidence 347899999999999999999986411 23455555544310 0000 1 1221111 1112
Q ss_pred hhhhhhccccc--CCchhhHHHHHhhchHHHH------------------HHHHHHhhhccEEEEEEeCCCCCCcchHH
Q 008909 234 DLAITTTIGME--GIPLATREAAVARMPSMIE------------------RQATAAIEESCVIIFLVDGQAGLTAADEE 292 (549)
Q Consensus 234 ~i~~~~~~~~~--Gi~~~~~~~~i~~~~~~i~------------------~~~~~~i~~~d~illVvD~~~~~~~~~~~ 292 (549)
.+...+.|++. +.+......++.++...+. +.+...+-..+.-++++| .|++..|..
T Consensus 96 tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD--EPts~LD~~ 172 (359)
T 3fvq_A 96 TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD--EPFSALDEQ 172 (359)
T ss_dssp CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE--STTTTSCHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe--CCcccCCHH
Confidence 44555666654 5666666666666555443 333333333455677778 566665544
No 459
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.30 E-value=0.00064 Score=68.20 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=55.3
Q ss_pred HhcCCcEEEEEEccccCCHhH-H-HHHHHHHHhCCcEEEEEecccCCCCCchhhhHHHHHHHHHHHhcCCCCCEEEEccc
Q 008909 455 IRRSDVVALVIEAMACITEQD-C-RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (549)
Q Consensus 455 ~~~ad~~llVvD~~~~~~~~~-~-~~l~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~iSA~ 532 (549)
+.++|.+++| ++..+..... . +++......++|.+||+||+|+.+.... ...+.+...+...++ +++++||+
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~----~~~~~~~~~y~~~G~-~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGM----DFVNEQMDIYRNIGY-RVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHH----HHHHHHHHHHHTTTC-CEEECBTT
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhH----HHHHHHHHHHHhCCC-cEEEEecC
Confidence 5789999976 5555533222 1 2333345678999999999999864211 112233444555554 79999999
Q ss_pred cCCCHHHHHHHH
Q 008909 533 AGQSVDKYVLYL 544 (549)
Q Consensus 533 ~g~~v~~L~~~l 544 (549)
+|.|+++|...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999998765
No 460
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.28 E-value=0.0004 Score=71.77 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=59.3
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcC-----------------CCeeecCCCCceeeeeEEEEec--------cC--CCeE
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGE-----------------DRTIVSPISGTTRDAIDTEFTG--------PE--GQKF 422 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~-----------------~~~~~~~~~gtt~~~~~~~~~~--------~~--~~~i 422 (549)
....|+++|.+++|||+|+|.++|. ..+.+. ++|+....+.+.. .+ ...+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~---~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC---CSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC---CCCCCceeEEEEecCccccccCCCCcceE
Confidence 3457899999999999999999863 123222 2444444444332 12 2469
Q ss_pred EEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHH
Q 008909 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ 484 (549)
Q Consensus 423 ~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~ 484 (549)
.++||||+.+... .......-..-.+--++ ++||+....+.+.+...+..+.+
T Consensus 143 vllDTeG~~~~~~-------~~~~d~~ifal~~lLSs--~~IyN~~~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 143 LLMDTQGTFDSQS-------TLRDSATVFALSTMISS--IQVYNLSQNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEEEECCCSSHH-------HHHHHHHHHHHHHHHCS--EEEEEESSSCCHHHHHHHHHHHH
T ss_pred EEEcCCccccccc-------chhhhHHHHHHHHHHhh--HHHHhhcccccHHHHHHHHHHHH
Confidence 9999999965321 01110110111112344 45667677788888877665444
No 461
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.25 E-value=0.0012 Score=64.68 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhh
Q 008909 163 LPRVAIVGRPNVGKSALFNRLV 184 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~ 184 (549)
...|+++|.+|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999875
No 462
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.24 E-value=0.0018 Score=64.25 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchhhHHHhhhC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVG 185 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~ 185 (549)
...|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999998753
No 463
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.22 E-value=0.0003 Score=68.23 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|--
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999999863
No 464
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.22 E-value=0.0013 Score=66.55 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 468999999999999999999863
No 465
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.22 E-value=0.00082 Score=67.99 Aligned_cols=113 Identities=22% Similarity=0.270 Sum_probs=60.8
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCceEEEE-----EcccccccCCCCcchhhhhhhh
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLV-----DTGGVLNVSKSQPNIMEDLAIT 238 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~li-----DTpG~~~~~~~~~~~~~~i~~~ 238 (549)
-.++|+|++|+|||||++.|.|-.. ...+.+.++|..+.-. ...-+++.... +....+...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l--~p~ltV~en 95 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL--YPHLSVAEN 95 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTCCGGGSCEEEECTTCCC--CTTSCHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC------------CCCeEEEECCEECCCCCHHHCCEEEEecCCcC--CCCCCHHHH
Confidence 4789999999999999999998642 1234445544332100 00112222111 111244455
Q ss_pred hccccc--CCchhhHHHHHhhchHHHH------------------HHHHHHhhhccEEEEEEeCCCCCCcchHH
Q 008909 239 TTIGME--GIPLATREAAVARMPSMIE------------------RQATAAIEESCVIIFLVDGQAGLTAADEE 292 (549)
Q Consensus 239 ~~~~~~--Gi~~~~~~~~i~~~~~~i~------------------~~~~~~i~~~d~illVvD~~~~~~~~~~~ 292 (549)
+.|++. |.+...++.++.++...+. +.+...+-..+.-++++| .|++..|..
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD--EPts~LD~~ 167 (381)
T 3rlf_A 96 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD--EPLSNLDAA 167 (381)
T ss_dssp HTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE--STTTTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE--CCCcCCCHH
Confidence 556544 6777777777666554443 222222223455567778 566666544
No 466
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.16 E-value=0.0016 Score=65.73 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478999999999999999999863
No 467
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.16 E-value=0.0013 Score=66.17 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3579999999999999999999864
No 468
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.11 E-value=0.0013 Score=65.89 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999999864
No 469
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.11 E-value=0.0055 Score=63.82 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=65.6
Q ss_pred cccceEEEeCCCCCChhHHHHHHhcC------CCeeec-CCCCc-------e---eeeeEEEEe----------------
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRTIVS-PISGT-------T---RDAIDTEFT---------------- 415 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~~------~~~~~~-~~~gt-------t---~~~~~~~~~---------------- 415 (549)
.....++++|.+|+||||+++.|.+. .+.... +.... . +..+.....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 44568999999999999999998752 111111 11000 0 000000000
Q ss_pred -ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHh-----cCCcEEEEEEccccCCHhHHHHHHHHHHhCCcE
Q 008909 416 -GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIR-----RSDVVALVIEAMACITEQDCRIAERIEQEGKGC 489 (549)
Q Consensus 416 -~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~-----~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ 489 (549)
...+..+.|+||+|...... .. ...+.+..+.++ ..+-++||+|++.+ ......++.+.+.--..
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~------~l-m~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~it 441 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKS------HL-MEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLT 441 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHH------HH-HHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCS
T ss_pred HHhcCCCEEEEeCCCccchhh------hH-HHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCC
Confidence 01345689999999843211 00 111222222222 36778999998764 33344555555443334
Q ss_pred EEEEecccCC
Q 008909 490 LIVVNKWDTI 499 (549)
Q Consensus 490 ivv~NK~Dl~ 499 (549)
.+|+||.|..
T Consensus 442 gvIlTKLD~t 451 (503)
T 2yhs_A 442 GITLTKLDGT 451 (503)
T ss_dssp EEEEECGGGC
T ss_pred EEEEEcCCCc
Confidence 5688999974
No 470
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.05 E-value=0.0018 Score=65.11 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3478999999999999999999863
No 471
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.00078 Score=64.79 Aligned_cols=94 Identities=10% Similarity=0.008 Sum_probs=61.3
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCcch-HHHH---HHHHHc--cCCCeEEEEecc-CCCChhhH-HhHHHHH-----HcC
Q 008909 264 RQATAAIEESCVIIFLVDGQAGLTAAD-EEIA---DWLRKN--YMDKFIILAVNK-CESPRKGI-MQVSEFW-----SLG 330 (549)
Q Consensus 264 ~~~~~~i~~~d~illVvD~~~~~~~~~-~~~~---~~l~~~--~~~~p~ivv~NK-~D~~~~~~-~~~~~~~-----~~~ 330 (549)
.....++.++|.+|||||+.+...... .++. ..+... ..+.|++|..|| -|+...-. .+..... ...
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~ 281 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHP 281 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSC
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCc
Confidence 456688899999999999876433222 2221 233221 358899999997 47653211 1111111 124
Q ss_pred CCceEeeccCCCChhhhHHHHHHHhhh
Q 008909 331 FSPLPISAISGTGTGELLDLVCSELKK 357 (549)
Q Consensus 331 ~~~v~vSA~~g~gi~~L~~~i~~~l~~ 357 (549)
+.+.++||.+|+|+.+-++++.+.+..
T Consensus 282 W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 282 WLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 468999999999999999999887653
No 472
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.96 E-value=0.006 Score=61.24 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchhhHHHhhhCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGG 186 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~ 186 (549)
-.|+|+|.+|+|||||++.|.+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 47999999999999999998753
No 473
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.95 E-value=0.0017 Score=65.38 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3478999999999999999999864
No 474
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.93 E-value=0.0015 Score=65.61 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999999864
No 475
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.93 E-value=0.0037 Score=60.09 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3579999999999999999999863
No 476
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.91 E-value=0.0027 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|--
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999863
No 477
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.89 E-value=0.0025 Score=62.73 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVG 393 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~ 393 (549)
+...++++|.+|+||||++..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 445789999999999999998874
No 478
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.88 E-value=0.0038 Score=59.75 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999863
No 479
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.88 E-value=0.006 Score=55.81 Aligned_cols=49 Identities=10% Similarity=-0.109 Sum_probs=31.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCcchHHHHHHHHHc---cCCCeEEEEeccCCCC
Q 008909 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN---YMDKFIILAVNKCESP 316 (549)
Q Consensus 267 ~~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~---~~~~p~ivv~NK~D~~ 316 (549)
...+..+|.+++++.....- .......+.+... ..+.++.+|+|+++..
T Consensus 92 ~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 92 SAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp HHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred HHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35567799999999865433 3333445555542 1245778999999854
No 480
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00032 Score=64.27 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=43.2
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCc-eeeecCCCccccceeeeeeeCCceEEEEEcccccc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDTpG~~~ 223 (549)
...|+|+|++|+|||||+++|++... ........+|+....+. .+|..+.++|...+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~ 78 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTR 78 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhh
Confidence 45789999999999999999986532 23445566777766543 6677777788777654
No 481
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.74 E-value=0.0033 Score=61.72 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~ 186 (549)
--.++|+|++|+|||||++.|.|-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 357999999999999999999976
No 482
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.73 E-value=0.0033 Score=61.84 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=64.0
Q ss_pred ccceEEEeCCCCCChhHHHHHHhcC------CCeeec-CC--CCc--------eeeeeEEEEe-----------------
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTIVS-PI--SGT--------TRDAIDTEFT----------------- 415 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~~------~~~~~~-~~--~gt--------t~~~~~~~~~----------------- 415 (549)
....++++|.+|+||||+++.+.+. .+.... +. ++. .+..+...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998752 111111 00 000 0000000000
Q ss_pred ccCCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHH-----HhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEE
Q 008909 416 GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA-----IRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL 490 (549)
Q Consensus 416 ~~~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~-----~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~i 490 (549)
...+..+.++||+|....... ... .+.+.... ...++.+++++|+..+ ......+..+.+.....+
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~-----~~~--eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~~~t~ 251 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHN-----LME--ELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVGLTG 251 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHH-----HHH--HHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHCCSE
T ss_pred HhCCCCEEEecCCCCCCchHH-----HHH--HHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHcCCcE
Confidence 011345789999997432110 011 11111111 2457888999998764 334445555554423356
Q ss_pred EEEecccCCC
Q 008909 491 IVVNKWDTIP 500 (549)
Q Consensus 491 vv~NK~Dl~~ 500 (549)
|++||.|...
T Consensus 252 iivTh~d~~a 261 (304)
T 1rj9_A 252 VIVTKLDGTA 261 (304)
T ss_dssp EEEECTTSSC
T ss_pred EEEECCcccc
Confidence 6889998754
No 483
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.73 E-value=0.0025 Score=62.47 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhhHHHhhhC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVG 185 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~ 185 (549)
...|+++|.+|+||||++..|.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999998764
No 484
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.69 E-value=0.012 Score=56.41 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999863
No 485
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.68 E-value=0.0046 Score=58.54 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 486
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0028 Score=62.28 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchhhHHHhhhCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGG 186 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~ 186 (549)
-.++++|.+|+||||+++.|.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 487
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.49 E-value=0.0072 Score=58.15 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|--
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 488
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.49 E-value=0.0054 Score=61.35 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 478999999999999999999864
No 489
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.42 E-value=0.011 Score=58.48 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=20.7
Q ss_pred cccceEEEeCCCCCChhHHHHHHhc
Q 008909 369 NRIPAIAIVGRPNVGKSSILNALVG 393 (549)
Q Consensus 369 ~~~~~v~~~G~~~~GKssl~n~ll~ 393 (549)
.....++++|.+|+||||++..+.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455788999999999999988864
No 490
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.40 E-value=0.015 Score=59.71 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHhCCcEEEEEeccc
Q 008909 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWD 497 (549)
Q Consensus 418 ~~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~~~p~ivv~NK~D 497 (549)
.+..++|+||||..... ... ...+. ....+-.+|.+++|+|+..+ ......++.+...-...-||+||+|
T Consensus 179 ~~~DvVIIDTaG~l~~d------~~l-~~el~-~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID------EPL-MGELA-RLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp TTCSEEEEECCCCSSCC------HHH-HHHHH-HHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCCCEEEEcCCCccccc------HHH-HHHHH-HhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCceEEEEeCcC
Confidence 35579999999974310 000 00111 11223468999999999753 2233334444433233567899999
Q ss_pred CCC
Q 008909 498 TIP 500 (549)
Q Consensus 498 l~~ 500 (549)
...
T Consensus 249 ~~~ 251 (425)
T 2ffh_A 249 GDA 251 (425)
T ss_dssp GCS
T ss_pred Ccc
Confidence 753
No 491
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.23 E-value=0.0032 Score=61.66 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.6
Q ss_pred ccceEEEeCCCCCChhHHHHHHhc
Q 008909 370 RIPAIAIVGRPNVGKSSILNALVG 393 (549)
Q Consensus 370 ~~~~v~~~G~~~~GKssl~n~ll~ 393 (549)
....++++|.+|+||||++..+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355889999999999999998864
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.01 E-value=0.027 Score=60.66 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCchhhHHHhhhCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGG 186 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~ 186 (549)
-.++|+|++|+|||||++.|.|-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999976
No 493
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.99 E-value=0.013 Score=54.11 Aligned_cols=49 Identities=10% Similarity=-0.081 Sum_probs=29.4
Q ss_pred HHhhhccEEEEEEeCCCCCCcchHHHHHHHHHccCCCeEEEEeccCCCCh
Q 008909 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (549)
Q Consensus 268 ~~i~~~d~illVvD~~~~~~~~~~~~~~~l~~~~~~~p~ivv~NK~D~~~ 317 (549)
..+..+|.+|+++.....-........+.+... .+.++.+|+|+++...
T Consensus 86 ~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 86 ALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred HHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 556789999999875421111112234445442 1566889999998654
No 494
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.94 E-value=0.014 Score=68.98 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCCceeeecCCCccccceeeeeeeCCc
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH 211 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 211 (549)
--.++|+|++|+|||||++.|.|.- ++..|.+.++|.
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~------------~~~~G~I~idG~ 480 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYY------------DVLKGKITIDGV 480 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSS------------CCSEEEEEETTE
T ss_pred CcEEEEEecCCCcHHHHHHHhcccc------------ccccCcccCCCc
Confidence 3479999999999999999999763 234556666664
No 495
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.90 E-value=0.018 Score=62.22 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|--
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3579999999999999999999863
No 496
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.85 E-value=0.022 Score=61.30 Aligned_cols=25 Identities=36% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|--
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3479999999999999999999763
No 497
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.81 E-value=0.11 Score=47.03 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=45.4
Q ss_pred CCeEEEEeCCCccchhhhccCCChhhhhHHHHHHHHHhcCCcEEEEEEccccCCHhHHHHHHHHHHh-----CCcEEEEE
Q 008909 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-----GKGCLIVV 493 (549)
Q Consensus 419 ~~~i~l~DTpG~~~~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~l~~l~~~-----~~p~ivv~ 493 (549)
...++|+|||+.... .....+..+|.+++|+..+..- ..-..+++.+... +.++.+|+
T Consensus 75 ~yD~viiD~~~~~~~----------------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV----------------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp TSSEEEEECCSSSSH----------------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCCEEEEECCCCCCH----------------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 457899999987321 1233567899999999987654 5555566666654 46778999
Q ss_pred ecccCC
Q 008909 494 NKWDTI 499 (549)
Q Consensus 494 NK~Dl~ 499 (549)
|++|..
T Consensus 138 N~~~~~ 143 (206)
T 4dzz_A 138 TRKIEM 143 (206)
T ss_dssp CSBCTT
T ss_pred eccCCC
Confidence 999853
No 498
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.76 E-value=0.023 Score=61.16 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~ 186 (549)
--.++|+|++|+|||||++.|.|-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999976
No 499
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.70 E-value=0.0075 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchhhHHHhhhCCC
Q 008909 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 163 ~~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
--.++|+|++|+|||||++.|.|--
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3479999999999999999999863
No 500
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.64 E-value=0.03 Score=60.30 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchhhHHHhhhCCC
Q 008909 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (549)
Q Consensus 164 ~~I~i~G~~~~GKSsl~n~l~~~~ 187 (549)
-.++|+|++|+|||||++.|.|--
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 479999999999999999999863
Done!