BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008910
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 338 IQSSELIGCAQVRLCELEPG 357
+ E +G A + ++ G
Sbjct: 82 VM-DETLGTATFTVSSMKVG 100
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
D++ DPYV L + + ++R +TR N+ +NP+WN+TF+F+++ ++L + D
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 78
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
+ E +G A + ++ G
Sbjct: 97 VM-DETLGTATFTVSSMKVG 115
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
D++ DPYV L + + ++R +TR N+ +NP+WN+TF+F+++ ++L + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 93
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 436 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 487
D +++R + I R VL V V A+NL D G +DPYV L + KSE++ KT+
Sbjct: 155 DHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 214
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD 521
+ LNP WN+TF F +++ D L E+WD D
Sbjct: 215 TIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IV 320
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
E + + L V I+D + ++ +G + EL+
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 268
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
+ E +G A + ++ G
Sbjct: 97 VM-DETLGTATFTVSSMKVG 115
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
D++ DPYV L + + ++R +TR N+ +NP+WN+TF+F+++ ++L + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 93
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
P GTLEV LV AKGL + D + DPY L R +K+ ++ + P WNE F F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYR 379
V E T L +I+D + + +G A + LEP +D +Y+
Sbjct: 66 VS-EGTTELKAKIFDKDVGTEDDAVGEATIP---LEP--VFVEGSIPPTAYNVVKDEEYK 119
Query: 380 GQVHLELLYCPFG 392
G++ + L + P G
Sbjct: 120 GEIWVALSFKPSG 132
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLN--PIWNQTFDFV 504
G L V ++ A+ L +D + DPYV LT + T+++ V + + P WN+TF F
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 505 VEDGLHDMLIAEVWDHD 521
V +G + L A+++D D
Sbjct: 66 VSEGTTE-LKAKIFDKD 81
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 436 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 487
D+ ++R + I R VL V V A+NL D G +DPYV L + KSE++ KT+
Sbjct: 14 DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD 521
+ LNP WN+TF F +++ D L E+WD D
Sbjct: 74 TIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IVEDESTQH 327
AK L D G SDPY L + P P E +K+KTI LNP WNE F F + E + +
Sbjct: 40 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 328 LVVRIYDDEGIQSSELIGCAQVRLCELE 355
L V I+D + ++ +G + EL+
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGISELQ 127
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFI 319
L VK+V L KD+ G SDPY L + E + ++KTI LNP WNE F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 376
V + S L+ ++D+ + + +G V L L +P +
Sbjct: 83 V-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKS 141
Query: 377 KYRGQVHLELLYCP 390
+ +G + L++ Y P
Sbjct: 142 RVKGFLRLKMAYMP 155
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRN----KTRVVNDCLNPIWNQTFDF 503
+L V V+ +L D+ G +DPYV L++ E R +T+ + LNP WN+ F F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 504 VVEDGLHDMLIAEVWDHD 521
V H +L EV+D +
Sbjct: 82 RVNPSNHRLLF-EVFDEN 98
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
G+L V V+ A +L A+D GK+DP+ +L + R +T V LNP WN+ F F ++D
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 508 GLHDMLIAEVWDHD 521
+HD+L V+D D
Sbjct: 71 -IHDVLEVTVFDED 83
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
S ++K VG L+VK+++A L D GKSDP+ +L L ++ T+ +LNP WN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLL---ELGNDRLQTHTVYKNLNPEWN 61
Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ F F ++D L V ++D++G + + +G + L + G
Sbjct: 62 KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
L VTV A+NL D G +DPYV L + K+E++ KT+ + LNP WN++F F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 507 DGLHD-MLIAEVWDHD 521
D L E+WD D
Sbjct: 80 PSDKDRRLSVEIWDWD 95
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V I+D + ++ G + EL
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
+ VTV A NL D G +DPYV L + ++ T+ KTR V LNP+WN+TF F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 507 DG-LHDMLIAEVWDHD 521
G + L EVWD D
Sbjct: 82 PGDVERRLSVEVWDWD 97
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVE 321
+ V + +A+ L D G SDPY L + P P +K++T+ LNP+WNE F F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V ++D + ++ +G + EL
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
L VTV A+NL D G +DPYV L + K+E++ KT+ + LNP WN++F F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 507 DGLHD-MLIAEVWDHD 521
D L E+WD D
Sbjct: 79 PSDKDRRLSVEIWDWD 94
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V I+D + ++ +G + EL
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
L VTV A+NL D G +DPYV L + K+E++ KT+ + LNP WN++F F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 507 DGLHD-MLIAEVWDHD 521
D L E+WD D
Sbjct: 78 PSDKDRRLSVEIWDWD 93
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V I+D + ++ +G + EL
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 428 TEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTR 487
TE + EK + ++ G L V VI A L A GK++PY ++M TR
Sbjct: 367 TEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISM--GSQSYTTR 424
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG 524
+ D LNP WN F ++D D+L ++D D F
Sbjct: 425 TIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS 461
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
+G L V +++A L GKS+PY + + ++ ++TI + LNP WN + +F +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQV 349
+D L + ++D + + +G ++
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
+ + +V A+GL KD G SDPY + V + K++KTI +LNP+W E+F F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHN- 74
Query: 324 STQHLVVRIYD-DEGIQS 340
S+ + VR+ D D+ I+S
Sbjct: 75 SSDRIKVRVLDEDDDIKS 92
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
+S+TV+ A+ L A D G +DPYV + + K++ R KT N LNP+W + F F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN--LNPVWEENFHFECHNS- 75
Query: 510 HDMLIAEVWDHDTFGKRYLSRYFQ 533
D + V D D K + + F+
Sbjct: 76 SDRIKVRVLDEDDDIKSRVKQRFK 99
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
++S L + L+ +++AKGL D G +DPY L + P K+ K +KT+ N N
Sbjct: 19 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
P+WNE ++ ED + L + + D++ +E IG + L +L+
Sbjct: 79 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 503
L T+I A+ L D G ADPYV L + +++ +T+ + + NP+WN+T +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 504 VVEDGLHDMLIAEVWDHDTFG 524
ED L V D D FG
Sbjct: 91 TEEDMQRKTLRISVCDEDKFG 111
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
++S L + L+ +++AKGL D G +DPY L + P K+ K +KT+ N N
Sbjct: 17 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
P+WNE ++ ED + L + + D++ +E IG + L +L+
Sbjct: 77 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 125
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 503
L T+I A+ L D G ADPYV L + +++ +T+ + + NP+WN+T +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 504 VVEDGLHDMLIAEVWDHDTFG 524
ED L V D D FG
Sbjct: 89 TEEDMQRKTLRISVCDEDKFG 109
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 449 VLSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTF---DFV 504
L+V ++ A+ LPA D G +DP+V + + + + +T+V LNP WN+TF F
Sbjct: 27 TLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 86
Query: 505 VEDGLHDMLIAEVWDHDTFGK 525
E + +L +V D+D F +
Sbjct: 87 YEKVVQRILYLQVLDYDRFSR 107
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF---EFI 319
TL VK+++A+ L KD G SDP+ +++ P + ++K +LNP WNE F F
Sbjct: 27 TLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 86
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
E + L +++ D + ++ IG + L +++
Sbjct: 87 YEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
E G +++A V+D D F K
Sbjct: 104 ELGGKTLVMA-VYDFDRFSKH 123
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
E G +++A V+D D F K
Sbjct: 96 ELGGKTLVMA-VYDFDRFSKH 115
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
E G +++A V+D D F K
Sbjct: 96 ELGGKTLVMA-VYDFDRFSKH 115
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + + LV+ +YD + ++IG +V + ++ G
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 506
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 507 DGLHDMLIAEVWDHDTFGKR 526
+ L+ V+D D F K
Sbjct: 81 ELAGKTLVMAVYDFDRFSKH 100
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 442 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWN 498
R V G L+V ++ A+NL D+ G +DPYV + + ++ + KT + + LNP +N
Sbjct: 144 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 203
Query: 499 QTFDFVV--EDGLHDMLIAEVWDHDTFGK 525
++F F V E ++ V D+D GK
Sbjct: 204 ESFSFEVPFEQIQKVQVVVTVLDYDKIGK 232
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 114
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
E G +++A V+D D F K
Sbjct: 79 ELGGKTLVMA-VYDFDRFSKH 98
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
++S L G L V +++A L DL G SDPY A L K +K+ N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
P +NE F V ES ++ L + + D + I +E+IG +V
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V+++QA L KD G SDPY +++ P +K ++K LNPI+NE F+F V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 322 DESTQHLVVRIYDDEGIQSSELIG 345
+ + + L +YD + +LIG
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIG 106
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
G+L+VT+I A NL A DL G +DPYV +++ + + KT + + LNP +N+ FD
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 503 FVVEDGLHDMLIAEVWDHDTFG 524
E + L V D+D G
Sbjct: 213 VAPESVENVGLSIAVVDYDCIG 234
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 506
L V ++ A +LPA D G +DPYV + + + + +T+V LNPI+N+TF F V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 507 DGLHDMLIAEVWDHDTFGKRYL 528
+ L V+D D F + L
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDL 104
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
++S L G L V +++A L DL G SDPY A L K +K+ N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
P +NE F V ES ++ L + + D + I +E+IG +V
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V+++QA L KD G SDPY +++ P +K ++K LNPI+NE F+F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 322 DESTQHLVVRIYDDEGIQSSELIG 345
+ + + L +YD + +LIG
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIG 105
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
G+L+VT+I A NL A DL G +DPYV +++ + + KT + + LNP +N+ FD
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 503 FVVEDGLHDMLIAEVWDHDTFG 524
E + L V D+D G
Sbjct: 212 VAPESVENVGLSIAVVDYDCIG 233
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 506
L V ++ A +LPA D G +DPYV + + + + +T+V LNPI+N+TF F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 507 DGLHDMLIAEVWDHDTFGKRYL 528
+ L V+D D F + L
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDL 103
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
+ V+++ GL KD++G SDPY V P+ + ++KTI LNP WNE F V
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 321 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 376
+ QH L+ ++D+ + + +G V L L P +
Sbjct: 82 HPQ--QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS 139
Query: 377 KYRGQVHLELLYCP 390
+ +G + L++ Y P
Sbjct: 140 RVKGYLRLKMTYLP 153
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 504
++ V VI L D++G +DPYV +T M T +T+ + LNP WN+ F
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 505 VEDGLHDMLIAEVWDHDTFGK 525
V H +L EV+D + +
Sbjct: 81 VHPQQHRLLF-EVFDENRLTR 100
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
+ +TV+ A+NL D DP+ + + S + T V + L+P WNQ +D V G
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--GK 64
Query: 510 HDMLIAEVWDHDTFGKR 526
D + VW+H K+
Sbjct: 65 TDSITISVWNHKKIHKK 81
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
+ + ++ AK L KD DP+A + V + + T+ N L+P WN+H++ V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYV--G 63
Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQV 349
T + + +++ + I Q + +GC ++
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRL 92
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
L +TV+ A+NL D DP+ + + S + T V + L+P WNQ +D + G
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYI--GK 62
Query: 510 HDMLIAEVWDHDTFGKR 526
D + VW+H K+
Sbjct: 63 SDSVTISVWNHKKIHKK 79
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L + ++ AK L KD DP+A + V + + T+ N L+P WN+H++ +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQV 349
+ + + +++ + I Q + +GC ++
Sbjct: 64 DS--VTISVWNHKKIHKKQGAGFLGCVRL 90
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
+ VK++ GL KD++G SDPY V P+ + ++KTI LNP WNE F V
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 377
+ ++ ++D+ + + +G V L L P ++
Sbjct: 70 LPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128
Query: 378 YRGQVHLELLYCP 390
+G + L++ Y P
Sbjct: 129 VKGYLRLKMTYLP 141
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 504
V+ V VI L D++G +DPYV +T M T +T+ + LNP WN+ F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 505 VEDGLHDMLIAEVWDHDTFGK 525
V H +L EV+D + +
Sbjct: 69 VLPQRHRILF-EVFDENRLTR 88
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV------------VLTMKKSETRNKTRVVNDCLNP 495
G L + ++ A NL D G +DP+V V+ +E + +T+ V LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 496 IWNQTFDF---VVEDGLHDMLIAEVWDHDTFG 524
WNQT + +E + L VWD+D F
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS 109
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLN 309
+G L + ++QA+ L +D G SDP+ +++ P E +++K + LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 310 PIWNE---HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLC 352
P WN+ + +E + L V ++D + S++ +G + L
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 501
+G L V +I +L A D G +DP+V L +K + ++KT++ LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 502 DFVVEDGLHDMLIAEVWDHD 521
D D L VWD+D
Sbjct: 96 DIKHSDLAKKSLDISVWDYD 115
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 501
+G L V +I +L A D G +DP+V L +K + ++KT++ LNP +N+ F
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 502 DFVVEDGLHDMLIAEVWDHD 521
D D L VWD+D
Sbjct: 74 DIKHSDLAKKSLDISVWDYD 93
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
L+V V+ A +LP SD+ G +DPYV + + KK ++ KT V N ++N+ F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 501
+G L V +I +L A D G +DP+V L +K + ++KT++ LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 502 DFVVEDGLHDMLIAEVWDHD 521
D D L VWD+D
Sbjct: 96 DIKHSDLAKKSLDISVWDYD 115
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 425 ANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---E 481
G +E D R V G L+V ++ A+NL D+ G +DPYV + + ++
Sbjct: 2 GGGGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 61
Query: 482 TRNKTRVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK 525
+ KT + + LNP +N++F F V E ++ V D+D GK
Sbjct: 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGK 107
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 112
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
R L V V NL A G +DPYV +L K+ R KT V LNP+++Q+FDF
Sbjct: 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 504 VV 505
V
Sbjct: 82 SV 83
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 283 SDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQH--LVVRIYDDEGI 338
SDPY +++ P ++ + KT LNP++++ F+F V Q L V + + G
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 339 QSSE--LIGCAQVRLCELE 355
S + L+G V L E
Sbjct: 104 LSKDKGLLGKVLVALASEE 122
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDP-YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
G L V +V++ K GK DP +V+F + KK+K ++N+LNP+WNE EF +
Sbjct: 7 GMLRV-IVESASNIPKTKFGKPDPIVSVIFKD----EKKKTKKVDNELNPVWNEILEFDL 61
Query: 321 ED---ESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L + + D E I ++LIG A V L +L
Sbjct: 62 RGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
G+L V V A N+P + GK DP V + K + + T+ V++ LNP+WN+ +F
Sbjct: 7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKK--TKKVDNELNPVWNEILEF 59
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 442 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWN 498
R V G L+V ++ A+NL D+ G +DPYV + + ++ + KT + + LNP +N
Sbjct: 12 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 71
Query: 499 QTFDFVV--EDGLHDMLIAEVWDHDTFGK 525
++F F V E ++ V D+D GK
Sbjct: 72 ESFSFEVPFEQIQKVQVVVTVLDYDKIGK 100
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 105
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 442 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWN 498
R V G L+V ++ A+NL D+ G +DPYV + + ++ + KT + + LNP +N
Sbjct: 11 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 70
Query: 499 QTFDFVV--EDGLHDMLIAEVWDHDTFGK 525
++F F V E ++ V D+D GK
Sbjct: 71 ESFSFEVPFEQIQKVQVVVTVLDYDKIGK 99
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 104
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 452 VTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC---LNPIWNQTFDFVV--E 506
V +I A NL A D+ G +DPYV + + + R + + LNPI+N++F F + E
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 507 DGLHDMLIAEVWD------HDTFGKRYLS 529
+I V D +D GK YLS
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIGKIYLS 108
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-----SKTINNDLNPIWNEHF 316
++ V +++A+ L D+ G SDPY ++ L K K+ + T +LNPI+NE F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVW---LMYKDKRVEKKKTVTKKRNLNPIFNESF 72
Query: 317 EFIVEDESTQH--LVVRIYDDEGIQSSELIG 345
F + E + +++ + D + + +++IG
Sbjct: 73 AFDIPTEKLRETTIIITVMDKDKLSRNDVIG 103
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTF 501
L VT++ A++LP+ + +PYV L + + + +T+ V L P WNQTF
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTF 501
L VT++ A++LP+ + +PYV L + + + +T+ V L P WNQTF
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 447 RGVLSVTVILAENLPASDLMG-KADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDF 503
R V + A LPA D +DPY+ +T + + + + KTRV+ L+P +++TF F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 266 VKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
V + +A+GL D SDPY + + LPEK K KT + L+P ++E F F
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTI--LPEKKHKVKTRVLRKTLDPAFDETFTF 79
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 467 GKADPYVVLTMKKSETR---NKTRVVNDCLNPIWNQTFDF-VVEDGLHDMLIAEVWD 519
G DPYV +++ ++R KT+ V DC +P +++ F F V E+ L+ VW+
Sbjct: 45 GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWN 101
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L++ ++ AK NK PY + V +KT+K NN +P W + IV
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK---CNNTNSPKWKQPLTVIVTPV 94
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCE 353
S H R++ + ++S L+G A + + E
Sbjct: 95 SKLHF--RVWSHQTLKSDVLLGTAALDIYE 122
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINND-LNPIWNEH 315
GT+E+K++ A+ L++K + Y + + LP T K+KT+NN+ ++P +NE+
Sbjct: 649 AGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNEN 704
Query: 316 FEFIVEDESTQHL-VVRIYDDEGIQSSELIGCAQVRLCELEPG 357
F+ + L VVRI +E + IG + L ++PG
Sbjct: 705 -AFVFKKVVLPDLAVVRIIVNE--DGGKFIGHRLMPLDGIKPG 744
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 255 ELELKPVGTLEVKLV-QAKGLTNKDLIGKSDPYAV-LFVRPLPEKTKKSKTINNDLNPIW 312
++E P LEVK+ +KG+ N+ LI D Y L V+ + + K +NN LNP
Sbjct: 365 DMEASP---LEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIE---NRYKILNNSLNPAI 418
Query: 313 NEHFEF 318
+E +F
Sbjct: 419 SEDNDF 424
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 255 ELELKPVGTLEVKLV-QAKGLTNKDLIGKSDPY-AVLFVRPLPEKTKKSKTINNDLNPIW 312
++E P LEVK+ +KG+ N+ LI D Y + L V+ + + K +NN LNP
Sbjct: 365 DMEASP---LEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIE---NRYKILNNSLNPAI 418
Query: 313 NEHFEF 318
+E +F
Sbjct: 419 SEDNDF 424
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 286 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338
+ VRP P T+ S N ++ +W+ ++ +E ++ VV+I D++G+
Sbjct: 276 FGCNLVRPRP-FTEVSALYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGV 327
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 286 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338
+ VRP P T+ S N ++ +W+ ++ +E ++ VV+I D++G+
Sbjct: 276 FGCNLVRPRP-FTEVSALYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGV 327
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 264 LEVKLVQAKGLT-------NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
L V++++A+ L ++ + S+PY + + P + +K++ P++ E +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 317 EFIVE--DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
F + + + L++ + D + +IG V LCE++
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD 128
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 135 GGSGVTMELEMQWDANSSIILAIKTRLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFA 193
GG G+ +E + +D S+ LA++ R G VA V+N + G+ RL P PG +
Sbjct: 165 GGRGLILEGFVPFDREVSL-LAVRGRTGEVAFYPLVENRHWGGILRLSLAPA----PGAS 219
Query: 194 ------AVSYSLREKKKLDF 207
A +Y+LR + LD+
Sbjct: 220 EALQKKAEAYALRAMEALDY 239
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 264 LEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWNEHFEF 318
L V+++ + L NK+ DP ++ + + T +T NN NP W+ FEF
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 319 --IVEDESTQHLVVRIYD 334
V D + +V YD
Sbjct: 559 EVTVPDLALVRFMVEDYD 576
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 264 LEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWNEHFEF 318
L V+++ + L NK+ DP ++ + + T +T NN NP W+ FEF
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 319 --IVEDESTQHLVVRIYD 334
V D + +V YD
Sbjct: 557 EVTVPDLALVRFMVEDYD 574
>pdb|3UAJ|H Chain H, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|C Chain C, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|H Chain H, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|I Chain I, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 236
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 56 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFS 115
++FY SW+ S + L W+ + ++ Y N + + SV+ Q LS++ +
Sbjct: 30 SDFYWSWLRQSPGKGLEWIGYAHSRVSAYYNPSLKSRVTISVDTSKNQIS-LRLSAVTAA 88
Query: 116 KFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVAL----PVQVKN 171
L A Q TG +GV+ + W + +I+++ + G ++ P
Sbjct: 89 DTALYYCARQGTGT-------TGVSEDSFDLWGQGTKVIVSLASTKGPSVFPLAPSSKST 141
Query: 172 IGFTGVFRLIFRPLVDEFPGFAAVSY 197
G T + + D FP VS+
Sbjct: 142 SGGTAALGCLVK---DYFPEPVTVSW 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,285,948
Number of Sequences: 62578
Number of extensions: 625101
Number of successful extensions: 1637
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1513
Number of HSP's gapped (non-prelim): 108
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)