Query 008910
Match_columns 549
No_of_seqs 428 out of 3147
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 18:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 2.3E-54 5E-59 459.7 37.1 460 66-541 218-803 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 3.6E-31 7.9E-36 271.1 22.8 224 257-537 162-393 (421)
3 cd04016 C2_Tollip C2 domain pr 99.9 3.4E-22 7.3E-27 169.3 14.5 119 261-388 1-121 (121)
4 KOG2059 Ras GTPase-activating 99.9 3.4E-21 7.3E-26 196.7 13.5 218 261-539 4-240 (800)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 9.2E-21 2E-25 163.7 13.7 119 264-387 1-126 (126)
6 cd08681 C2_fungal_Inn1p-like C 99.8 1.9E-20 4.1E-25 160.0 13.0 117 262-388 1-118 (118)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.4E-20 9.6E-25 158.3 14.8 121 263-390 1-121 (121)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 7.2E-20 1.6E-24 156.1 13.9 116 263-384 1-125 (126)
9 cd08395 C2C_Munc13 C2 domain t 99.8 1.3E-19 2.7E-24 153.2 14.2 108 263-371 1-115 (120)
10 cd04036 C2_cPLA2 C2 domain pre 99.8 1.4E-19 2.9E-24 154.8 14.5 116 264-388 2-117 (119)
11 cd08375 C2_Intersectin C2 doma 99.8 1.8E-19 3.8E-24 157.0 15.2 119 259-388 12-135 (136)
12 cd08677 C2A_Synaptotagmin-13 C 99.8 4.8E-20 1E-24 153.4 10.9 108 256-366 8-118 (118)
13 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.8E-19 3.9E-24 153.4 14.4 115 263-389 1-115 (116)
14 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.3E-19 4.9E-24 158.7 14.3 125 263-390 1-133 (150)
15 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.9E-19 4.1E-24 155.7 13.4 121 263-389 1-126 (127)
16 cd04024 C2A_Synaptotagmin-like 99.8 2.7E-19 5.8E-24 155.3 13.9 123 262-388 1-128 (128)
17 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.6E-19 1.2E-23 150.9 14.8 119 264-388 2-121 (121)
18 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 4.5E-19 9.8E-24 152.6 13.9 121 263-386 1-122 (123)
19 cd08381 C2B_PI3K_class_II C2 d 99.8 2.8E-19 6.1E-24 153.0 12.2 105 261-366 12-121 (122)
20 cd08678 C2_C21orf25-like C2 do 99.8 1E-18 2.2E-23 150.9 15.7 122 264-391 1-122 (126)
21 cd04028 C2B_RIM1alpha C2 domai 99.8 8.1E-19 1.8E-23 153.2 13.9 109 261-370 28-140 (146)
22 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.6E-18 3.4E-23 149.4 15.5 122 261-390 3-124 (126)
23 cd08391 C2A_C2C_Synaptotagmin_ 99.8 7.4E-19 1.6E-23 150.9 13.4 115 262-388 1-121 (121)
24 KOG1030 Predicted Ca2+-depende 99.8 3.2E-19 6.9E-24 153.8 10.9 96 260-359 4-99 (168)
25 COG5038 Ca2+-dependent lipid-b 99.8 2.3E-17 5E-22 178.0 27.3 320 220-544 656-1136(1227)
26 cd08393 C2A_SLP-1_2 C2 domain 99.8 7E-19 1.5E-23 151.4 12.2 109 259-367 12-125 (125)
27 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.2E-18 2.5E-23 148.9 13.0 114 263-388 1-119 (121)
28 cd08387 C2A_Synaptotagmin-8 C2 99.8 9.1E-19 2E-23 150.9 12.4 110 258-367 12-123 (124)
29 cd04015 C2_plant_PLD C2 domain 99.8 2.9E-18 6.3E-23 153.3 15.3 123 261-389 6-158 (158)
30 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.5E-18 3.2E-23 149.2 12.8 109 258-366 11-124 (125)
31 cd04044 C2A_Tricalbin-like C2 99.8 2.3E-18 5E-23 148.5 13.6 122 261-390 1-124 (124)
32 cd08377 C2C_MCTP_PRT C2 domain 99.8 5.8E-18 1.3E-22 144.8 15.2 118 262-388 1-118 (119)
33 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 6.7E-18 1.5E-22 147.5 14.8 122 263-388 1-132 (133)
34 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.4E-18 7.4E-23 147.4 12.5 109 259-367 13-123 (124)
35 cd08680 C2_Kibra C2 domain fou 99.8 2.5E-18 5.3E-23 146.7 11.2 110 257-366 9-124 (124)
36 cd04010 C2B_RasA3 C2 domain se 99.8 4.6E-18 1E-22 149.4 12.8 106 263-370 1-124 (148)
37 cd08677 C2A_Synaptotagmin-13 C 99.8 7E-18 1.5E-22 140.5 13.0 90 446-538 12-106 (118)
38 cd08388 C2A_Synaptotagmin-4-11 99.8 6.5E-18 1.4E-22 145.8 13.1 110 258-367 12-127 (128)
39 cd04041 C2A_fungal C2 domain f 99.8 2.5E-18 5.5E-23 144.8 10.3 103 262-367 1-107 (111)
40 cd08392 C2A_SLP-3 C2 domain fi 99.8 7.1E-18 1.5E-22 145.2 12.7 109 258-366 11-127 (128)
41 cd04046 C2_Calpain C2 domain p 99.8 2.2E-17 4.7E-22 142.5 15.6 123 260-390 1-123 (126)
42 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.2E-17 2.7E-22 142.9 13.9 118 264-387 2-120 (121)
43 cd04017 C2D_Ferlin C2 domain f 99.8 2.4E-17 5.3E-22 144.0 15.2 120 263-391 2-134 (135)
44 cd08685 C2_RGS-like C2 domain 99.8 7.4E-18 1.6E-22 143.3 11.2 106 260-366 10-119 (119)
45 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.8E-17 3.8E-22 142.7 13.6 103 447-549 14-125 (128)
46 cd04050 C2B_Synaptotagmin-like 99.7 1E-17 2.2E-22 139.7 11.8 99 264-368 2-102 (105)
47 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.4E-17 2.9E-22 143.8 12.9 110 258-367 12-124 (125)
48 cd04014 C2_PKC_epsilon C2 doma 99.7 2.5E-17 5.4E-22 143.5 14.6 115 261-389 3-129 (132)
49 cd08389 C2A_Synaptotagmin-14_1 99.7 1E-17 2.2E-22 143.8 11.9 110 257-367 11-123 (124)
50 cd08381 C2B_PI3K_class_II C2 d 99.7 2.2E-17 4.8E-22 141.3 13.6 93 448-541 13-112 (122)
51 cd08382 C2_Smurf-like C2 domai 99.7 2.8E-17 6.1E-22 141.1 14.3 118 264-386 2-122 (123)
52 cd08373 C2A_Ferlin C2 domain f 99.7 3.4E-17 7.4E-22 141.7 14.9 116 268-392 2-119 (127)
53 cd04043 C2_Munc13_fungal C2 do 99.7 3.1E-17 6.6E-22 141.8 14.5 117 263-389 2-121 (126)
54 cd04028 C2B_RIM1alpha C2 domai 99.7 3.3E-17 7.1E-22 143.1 14.7 100 448-549 29-134 (146)
55 cd04039 C2_PSD C2 domain prese 99.7 1.5E-17 3.3E-22 138.7 11.2 94 262-358 1-99 (108)
56 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.8E-17 8.3E-22 140.6 13.6 101 448-549 15-122 (125)
57 cd04030 C2C_KIAA1228 C2 domain 99.7 2.7E-17 5.8E-22 142.5 12.6 108 259-366 13-126 (127)
58 cd08390 C2A_Synaptotagmin-15-1 99.7 4.3E-17 9.4E-22 140.3 13.4 110 258-367 10-122 (123)
59 cd04027 C2B_Munc13 C2 domain s 99.7 6E-17 1.3E-21 139.9 14.0 115 263-386 2-127 (127)
60 cd08521 C2A_SLP C2 domain firs 99.7 2.8E-17 6E-22 141.5 11.7 108 259-366 11-123 (123)
61 cd08680 C2_Kibra C2 domain fou 99.7 6.9E-17 1.5E-21 137.8 13.4 104 446-549 12-122 (124)
62 cd04031 C2A_RIM1alpha C2 domai 99.7 4E-17 8.6E-22 141.0 11.8 108 259-367 13-125 (125)
63 cd08407 C2B_Synaptotagmin-13 C 99.7 4E-17 8.6E-22 141.6 11.5 91 447-537 14-112 (138)
64 KOG1030 Predicted Ca2+-depende 99.7 1.8E-17 4E-22 142.9 9.2 95 446-543 4-99 (168)
65 cd04029 C2A_SLP-4_5 C2 domain 99.7 9.2E-17 2E-21 138.0 13.5 95 447-541 14-115 (125)
66 cd08387 C2A_Synaptotagmin-8 C2 99.7 8.1E-17 1.8E-21 138.7 13.0 102 447-549 15-120 (124)
67 cd08688 C2_KIAA0528-like C2 do 99.7 3.8E-17 8.1E-22 137.4 10.6 101 264-367 1-108 (110)
68 cd08676 C2A_Munc13-like C2 dom 99.7 5.9E-17 1.3E-21 142.8 12.2 103 259-366 25-153 (153)
69 cd04016 C2_Tollip C2 domain pr 99.7 8.5E-17 1.8E-21 136.3 12.2 98 448-549 2-101 (121)
70 cd08406 C2B_Synaptotagmin-12 C 99.7 1E-16 2.2E-21 139.3 12.6 91 447-537 14-110 (136)
71 cd08685 C2_RGS-like C2 domain 99.7 1.1E-16 2.3E-21 136.2 12.4 100 448-549 12-117 (119)
72 cd04049 C2_putative_Elicitor-r 99.7 1.1E-16 2.3E-21 137.9 12.1 104 262-368 1-108 (124)
73 cd04040 C2D_Tricalbin-like C2 99.7 2.1E-16 4.5E-21 134.3 13.6 113 264-383 1-113 (115)
74 cd08379 C2D_MCTP_PRT_plant C2 99.7 1E-16 2.2E-21 136.8 11.6 91 449-542 1-101 (126)
75 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 9.6E-17 2.1E-21 144.0 11.8 110 259-368 24-138 (162)
76 cd04051 C2_SRC2_like C2 domain 99.7 8.8E-17 1.9E-21 138.7 11.1 115 263-384 1-125 (125)
77 cd08690 C2_Freud-1 C2 domain f 99.7 4.2E-16 9E-21 137.1 15.3 123 262-389 4-137 (155)
78 cd08388 C2A_Synaptotagmin-4-11 99.7 2.6E-16 5.7E-21 135.8 13.7 95 447-541 15-115 (128)
79 cd08406 C2B_Synaptotagmin-12 C 99.7 3.1E-17 6.8E-22 142.4 7.8 110 257-368 10-123 (136)
80 cd08394 C2A_Munc13 C2 domain f 99.7 1.7E-16 3.7E-21 133.4 11.8 100 262-370 2-103 (127)
81 cd04039 C2_PSD C2 domain prese 99.7 1.8E-16 3.8E-21 132.3 11.8 95 448-544 1-101 (108)
82 cd08682 C2_Rab11-FIP_classI C2 99.7 1E-16 2.2E-21 138.5 10.5 98 450-549 1-105 (126)
83 cd08692 C2B_Tac2-N C2 domain s 99.7 1.9E-16 4.1E-21 135.2 11.9 93 446-538 12-110 (135)
84 cd08385 C2A_Synaptotagmin-1-5- 99.7 3.3E-16 7.2E-21 134.9 13.6 102 447-549 15-120 (124)
85 cd08675 C2B_RasGAP C2 domain s 99.7 1.8E-16 3.9E-21 138.4 11.9 106 264-370 1-122 (137)
86 cd08407 C2B_Synaptotagmin-13 C 99.7 7.4E-17 1.6E-21 139.9 8.8 110 257-368 10-125 (138)
87 cd08691 C2_NEDL1-like C2 domai 99.7 1.1E-15 2.4E-20 132.6 16.0 118 263-386 2-136 (137)
88 cd04032 C2_Perforin C2 domain 99.7 2.4E-16 5.3E-21 134.6 11.6 93 259-355 25-118 (127)
89 cd04050 C2B_Synaptotagmin-like 99.7 2.4E-16 5.3E-21 131.4 11.3 90 449-542 1-90 (105)
90 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 6E-16 1.3E-20 138.9 14.5 97 445-541 24-127 (162)
91 cd08395 C2C_Munc13 C2 domain t 99.7 2.8E-16 6.1E-21 132.8 11.5 94 449-543 1-103 (120)
92 PLN03008 Phospholipase D delta 99.7 3.8E-16 8.2E-21 166.5 15.0 128 261-394 13-182 (868)
93 cd04031 C2A_RIM1alpha C2 domai 99.7 6.1E-16 1.3E-20 133.5 13.6 94 447-540 15-115 (125)
94 cd04045 C2C_Tricalbin-like C2 99.7 3.3E-16 7.3E-21 133.5 11.3 103 262-368 1-103 (120)
95 cd08681 C2_fungal_Inn1p-like C 99.7 3.2E-16 6.8E-21 133.8 11.1 92 448-541 1-93 (118)
96 cd04038 C2_ArfGAP C2 domain pr 99.7 4E-16 8.6E-21 136.9 11.8 92 261-357 1-92 (145)
97 cd04018 C2C_Ferlin C2 domain t 99.7 3.6E-16 7.9E-21 137.7 11.6 103 263-368 1-125 (151)
98 cd04041 C2A_fungal C2 domain f 99.7 3.4E-16 7.4E-21 131.8 11.0 96 448-543 1-102 (111)
99 KOG1013 Synaptic vesicle prote 99.7 1.8E-17 4E-22 156.0 3.5 227 254-535 85-326 (362)
100 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.4E-16 3.1E-21 139.0 8.9 110 257-368 8-121 (133)
101 cd04030 C2C_KIAA1228 C2 domain 99.7 1E-15 2.2E-20 132.5 14.1 102 447-549 15-124 (127)
102 cd08375 C2_Intersectin C2 doma 99.7 5.6E-16 1.2E-20 135.0 12.2 93 446-540 13-106 (136)
103 cd08521 C2A_SLP C2 domain firs 99.7 9.4E-16 2E-20 131.9 12.9 102 447-549 13-121 (123)
104 cd04011 C2B_Ferlin C2 domain s 99.7 7.4E-16 1.6E-20 129.9 11.9 99 262-367 4-109 (111)
105 cd04009 C2B_Munc13-like C2 dom 99.7 1.8E-15 3.8E-20 131.8 14.0 95 447-541 15-119 (133)
106 cd04022 C2A_MCTP_PRT_plant C2 99.7 5.8E-16 1.3E-20 133.9 10.2 99 449-549 1-104 (127)
107 cd08404 C2B_Synaptotagmin-4 C2 99.7 3.6E-16 7.7E-21 136.9 8.9 108 259-368 12-123 (136)
108 cd08692 C2B_Tac2-N C2 domain s 99.6 5.8E-16 1.3E-20 132.2 9.7 112 255-367 7-122 (135)
109 cd04052 C2B_Tricalbin-like C2 99.6 1E-15 2.2E-20 128.9 11.1 101 279-390 9-110 (111)
110 cd08389 C2A_Synaptotagmin-14_1 99.6 1.9E-15 4E-20 129.8 12.9 100 447-548 15-119 (124)
111 cd08408 C2B_Synaptotagmin-14_1 99.6 2.1E-15 4.5E-20 131.7 13.1 111 257-368 10-125 (138)
112 cd04037 C2E_Ferlin C2 domain f 99.6 8.2E-16 1.8E-20 132.1 10.2 120 263-390 1-120 (124)
113 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.8E-15 3.9E-20 132.4 12.3 91 447-537 14-110 (136)
114 cd04009 C2B_Munc13-like C2 dom 99.6 1.6E-15 3.5E-20 132.1 11.9 98 259-356 13-118 (133)
115 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.6E-16 7.8E-21 136.6 7.6 110 257-368 9-122 (134)
116 cd08376 C2B_MCTP_PRT C2 domain 99.6 2E-15 4.3E-20 128.5 11.9 92 449-542 1-93 (116)
117 cd04013 C2_SynGAP_like C2 doma 99.6 4.8E-15 1E-19 129.1 14.4 125 259-391 8-141 (146)
118 cd08405 C2B_Synaptotagmin-7 C2 99.6 3.5E-16 7.5E-21 137.0 7.3 109 258-368 11-123 (136)
119 cd08386 C2A_Synaptotagmin-7 C2 99.6 3.6E-15 7.9E-20 128.6 13.5 101 447-548 15-120 (125)
120 cd04021 C2_E3_ubiquitin_ligase 99.6 5.4E-15 1.2E-19 127.2 14.3 118 262-386 2-124 (125)
121 cd08409 C2B_Synaptotagmin-15 C 99.6 5E-16 1.1E-20 135.7 7.7 110 258-368 11-124 (137)
122 cd08402 C2B_Synaptotagmin-1 C2 99.6 2.8E-15 6.1E-20 131.3 12.2 110 257-368 10-123 (136)
123 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.5E-15 5.5E-20 131.5 11.8 92 447-538 14-111 (136)
124 cd04036 C2_cPLA2 C2 domain pre 99.6 2.6E-15 5.5E-20 128.3 11.4 92 450-541 2-94 (119)
125 cd04024 C2A_Synaptotagmin-like 99.6 2.7E-15 5.8E-20 130.1 11.6 91 448-540 1-94 (128)
126 cd08688 C2_KIAA0528-like C2 do 99.6 2.1E-15 4.6E-20 126.8 10.4 98 450-549 1-105 (110)
127 cd04019 C2C_MCTP_PRT_plant C2 99.6 2.8E-15 6.2E-20 132.6 11.7 90 449-540 1-92 (150)
128 cd04046 C2_Calpain C2 domain p 99.6 4.5E-15 9.7E-20 128.0 12.6 95 448-545 3-97 (126)
129 cd04048 C2A_Copine C2 domain f 99.6 3.8E-15 8.1E-20 127.4 12.0 100 268-367 6-113 (120)
130 cd08410 C2B_Synaptotagmin-17 C 99.6 4.9E-15 1.1E-19 129.3 12.8 91 447-537 13-109 (135)
131 cd04032 C2_Perforin C2 domain 99.6 3.5E-15 7.6E-20 127.5 11.5 94 446-542 26-121 (127)
132 cd08394 C2A_Munc13 C2 domain f 99.6 3.9E-15 8.4E-20 125.2 11.5 88 448-542 2-89 (127)
133 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 3.4E-15 7.5E-20 128.3 11.3 91 449-541 1-92 (123)
134 cd04035 C2A_Rabphilin_Doc2 C2 99.6 5.6E-15 1.2E-19 127.1 12.4 106 259-365 12-122 (123)
135 cd04038 C2_ArfGAP C2 domain pr 99.6 4E-15 8.8E-20 130.5 11.6 91 448-542 2-93 (145)
136 cd08676 C2A_Munc13-like C2 dom 99.6 4.9E-15 1.1E-19 130.6 12.2 100 445-549 25-151 (153)
137 cd08408 C2B_Synaptotagmin-14_1 99.6 5.8E-15 1.3E-19 128.8 12.4 92 447-538 14-112 (138)
138 cd08391 C2A_C2C_Synaptotagmin_ 99.6 4.2E-15 9.1E-20 127.5 11.4 93 448-542 1-99 (121)
139 cd08402 C2B_Synaptotagmin-1 C2 99.6 6.8E-15 1.5E-19 128.8 12.9 92 447-538 14-111 (136)
140 cd04010 C2B_RasA3 C2 domain se 99.6 3.6E-15 7.8E-20 131.1 11.0 98 450-549 2-118 (148)
141 cd04026 C2_PKC_alpha_gamma C2 99.6 5.1E-15 1.1E-19 128.8 11.9 106 262-368 13-121 (131)
142 cd08384 C2B_Rabphilin_Doc2 C2 99.6 4.7E-15 1E-19 129.4 11.6 92 446-537 11-108 (133)
143 cd04042 C2A_MCTP_PRT C2 domain 99.6 5.5E-15 1.2E-19 126.6 11.9 92 450-543 2-94 (121)
144 cd08390 C2A_Synaptotagmin-15-1 99.6 1.1E-14 2.4E-19 125.3 13.7 98 447-544 13-115 (123)
145 cd08410 C2B_Synaptotagmin-17 C 99.6 7.3E-15 1.6E-19 128.2 12.5 110 258-368 10-123 (135)
146 KOG0696 Serine/threonine prote 99.6 3.1E-16 6.7E-21 152.3 4.1 109 260-369 178-289 (683)
147 cd08383 C2A_RasGAP C2 domain ( 99.6 1.4E-14 3.1E-19 123.4 13.5 114 264-388 2-117 (117)
148 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.5E-14 3.2E-19 124.4 13.6 100 447-546 14-119 (123)
149 cd08378 C2B_MCTP_PRT_plant C2 99.6 4.8E-15 1E-19 126.6 10.3 86 450-541 2-87 (121)
150 cd04037 C2E_Ferlin C2 domain f 99.6 6.5E-15 1.4E-19 126.5 11.2 92 449-540 1-93 (124)
151 cd08686 C2_ABR C2 domain in th 99.6 2.3E-14 5E-19 118.9 13.9 82 264-352 1-91 (118)
152 cd08382 C2_Smurf-like C2 domai 99.6 7.7E-15 1.7E-19 126.0 11.4 91 450-543 2-95 (123)
153 cd04015 C2_plant_PLD C2 domain 99.6 7.7E-15 1.7E-19 131.2 11.5 100 446-548 5-134 (158)
154 cd08409 C2B_Synaptotagmin-15 C 99.6 1.3E-14 2.8E-19 126.8 12.7 90 447-537 14-109 (137)
155 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.4E-14 3.1E-19 126.4 12.7 91 447-537 13-109 (134)
156 cd04018 C2C_Ferlin C2 domain t 99.6 7.6E-15 1.7E-19 129.3 10.9 92 450-543 2-109 (151)
157 cd04045 C2C_Tricalbin-like C2 99.6 9.7E-15 2.1E-19 124.5 11.2 92 448-541 1-93 (120)
158 cd00276 C2B_Synaptotagmin C2 d 99.6 2E-15 4.4E-20 132.0 7.1 109 259-369 11-123 (134)
159 cd00275 C2_PLC_like C2 domain 99.6 5.4E-14 1.2E-18 121.8 15.9 119 263-388 3-127 (128)
160 cd04026 C2_PKC_alpha_gamma C2 99.6 1.8E-14 3.8E-19 125.4 12.8 94 448-541 13-111 (131)
161 cd00276 C2B_Synaptotagmin C2 d 99.6 1.1E-14 2.4E-19 127.2 11.4 91 447-537 13-109 (134)
162 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.5E-14 3.1E-19 123.9 11.1 90 450-541 2-92 (121)
163 cd08377 C2C_MCTP_PRT C2 domain 99.6 3.6E-14 7.8E-19 121.3 12.5 91 448-541 1-92 (119)
164 cd08678 C2_C21orf25-like C2 do 99.6 2E-14 4.3E-19 124.1 10.9 90 450-542 1-91 (126)
165 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 2.4E-14 5.3E-19 122.2 11.2 91 450-542 2-94 (121)
166 cd04049 C2_putative_Elicitor-r 99.6 3.1E-14 6.8E-19 122.6 11.8 94 448-543 1-99 (124)
167 KOG0696 Serine/threonine prote 99.6 6.5E-15 1.4E-19 143.2 8.1 95 448-542 180-279 (683)
168 cd04043 C2_Munc13_fungal C2 do 99.5 5.2E-14 1.1E-18 121.6 12.3 92 449-540 2-95 (126)
169 cd04011 C2B_Ferlin C2 domain s 99.5 3.5E-14 7.6E-19 119.6 10.4 90 447-542 3-97 (111)
170 cd04044 C2A_Tricalbin-like C2 99.5 7.3E-14 1.6E-18 120.3 11.5 96 448-544 2-99 (124)
171 cd04033 C2_NEDD4_NEDD4L C2 dom 99.5 8.2E-14 1.8E-18 121.6 11.8 93 449-542 1-99 (133)
172 cd04047 C2B_Copine C2 domain s 99.5 8.1E-14 1.8E-18 117.3 11.3 91 267-358 5-102 (110)
173 cd04014 C2_PKC_epsilon C2 doma 99.5 8.8E-14 1.9E-18 121.1 11.5 92 447-541 3-105 (132)
174 PLN03200 cellulose synthase-in 99.5 4.1E-14 8.9E-19 164.7 11.8 120 260-390 1978-2101(2102)
175 cd04048 C2A_Copine C2 domain f 99.5 9.8E-14 2.1E-18 118.7 11.2 93 453-545 5-107 (120)
176 cd04027 C2B_Munc13 C2 domain s 99.5 1.4E-13 3.1E-18 118.8 12.2 88 449-539 2-101 (127)
177 cd08400 C2_Ras_p21A1 C2 domain 99.5 1.6E-13 3.4E-18 118.3 11.7 96 448-549 4-100 (126)
178 cd08675 C2B_RasGAP C2 domain s 99.5 9.3E-14 2E-18 121.3 10.3 91 450-541 1-109 (137)
179 cd04017 C2D_Ferlin C2 domain f 99.5 1.9E-13 4.2E-18 119.3 12.0 84 449-534 2-95 (135)
180 cd04040 C2D_Tricalbin-like C2 99.5 1.7E-13 3.7E-18 116.3 11.2 92 450-542 1-93 (115)
181 cd08691 C2_NEDL1-like C2 domai 99.5 1.9E-13 4.1E-18 118.6 11.5 91 449-542 2-108 (137)
182 cd04051 C2_SRC2_like C2 domain 99.5 9.6E-14 2.1E-18 119.7 9.5 94 449-543 1-100 (125)
183 cd04047 C2B_Copine C2 domain s 99.5 3.9E-13 8.5E-18 113.1 10.9 96 452-548 4-108 (110)
184 PF00168 C2: C2 domain; Inter 99.5 3.1E-13 6.7E-18 107.7 9.4 85 264-348 1-85 (85)
185 cd08373 C2A_Ferlin C2 domain f 99.5 5.5E-13 1.2E-17 115.2 11.1 85 454-542 2-89 (127)
186 cd08690 C2_Freud-1 C2 domain f 99.5 8E-13 1.7E-17 116.4 12.1 92 450-541 4-110 (155)
187 cd08686 C2_ABR C2 domain in th 99.4 6.4E-13 1.4E-17 110.4 10.5 80 450-536 1-91 (118)
188 cd00275 C2_PLC_like C2 domain 99.4 1.5E-12 3.3E-17 112.7 11.9 98 449-547 3-107 (128)
189 cd04021 C2_E3_ubiquitin_ligase 99.4 1.5E-12 3.3E-17 111.9 11.2 90 449-542 3-93 (125)
190 cd04052 C2B_Tricalbin-like C2 99.4 5.6E-13 1.2E-17 112.2 7.8 84 465-549 9-92 (111)
191 PF00168 C2: C2 domain; Inter 99.4 2.6E-12 5.6E-17 102.4 9.8 83 450-532 1-85 (85)
192 KOG1011 Neurotransmitter relea 99.3 1.8E-12 4E-17 131.4 8.5 120 261-389 294-424 (1283)
193 KOG1028 Ca2+-dependent phospho 99.3 1E-11 2.2E-16 128.0 13.1 95 447-541 166-264 (421)
194 KOG1326 Membrane-associated pr 99.3 1E-12 2.2E-17 139.8 4.6 95 445-539 610-705 (1105)
195 PLN03200 cellulose synthase-in 99.3 3.8E-12 8.3E-17 148.6 9.3 96 445-543 1977-2073(2102)
196 cd08374 C2F_Ferlin C2 domain s 99.3 1.6E-11 3.4E-16 105.0 10.5 95 264-358 2-125 (133)
197 smart00239 C2 Protein kinase C 99.3 2.7E-11 6E-16 99.4 11.4 96 264-359 2-97 (101)
198 cd00030 C2 C2 domain. The C2 d 99.3 3E-11 6.5E-16 98.9 10.9 101 264-366 1-102 (102)
199 PLN03008 Phospholipase D delta 99.3 1.3E-11 2.8E-16 132.3 10.2 101 445-548 11-153 (868)
200 cd08383 C2A_RasGAP C2 domain ( 99.3 3.1E-11 6.8E-16 102.7 10.2 83 450-537 2-87 (117)
201 cd08374 C2F_Ferlin C2 domain s 99.2 6.4E-11 1.4E-15 101.3 10.5 93 450-542 2-125 (133)
202 cd04013 C2_SynGAP_like C2 doma 99.2 5E-11 1.1E-15 103.9 9.9 95 447-549 10-109 (146)
203 PLN02270 phospholipase D alpha 99.2 2.4E-10 5.2E-15 122.7 14.2 128 261-394 7-153 (808)
204 PF10296 DUF2404: Putative int 99.2 1.9E-10 4.1E-15 92.4 9.9 85 75-159 1-89 (91)
205 PLN02223 phosphoinositide phos 99.2 5.4E-10 1.2E-14 115.4 15.4 104 261-367 408-518 (537)
206 KOG1011 Neurotransmitter relea 99.2 4.4E-11 9.5E-16 121.6 6.8 93 445-540 292-396 (1283)
207 smart00239 C2 Protein kinase C 99.1 4.7E-10 1E-14 91.9 11.4 94 450-543 2-97 (101)
208 cd00030 C2 C2 domain. The C2 d 99.1 8.9E-10 1.9E-14 90.1 10.9 97 450-547 1-98 (102)
209 PLN02952 phosphoinositide phos 99.1 1.5E-09 3.3E-14 114.6 15.1 105 261-368 469-581 (599)
210 KOG1326 Membrane-associated pr 99.1 1.7E-10 3.8E-15 123.2 7.5 276 262-541 613-970 (1105)
211 PLN02223 phosphoinositide phos 99.0 1.3E-09 2.8E-14 112.6 11.5 102 447-549 408-518 (537)
212 KOG1328 Synaptic vesicle prote 99.0 6.4E-11 1.4E-15 122.0 1.3 128 260-391 112-303 (1103)
213 PLN02230 phosphoinositide phos 99.0 7.1E-09 1.5E-13 109.3 14.3 104 261-367 468-579 (598)
214 KOG1327 Copine [Signal transdu 98.9 7.9E-09 1.7E-13 105.8 12.9 183 297-540 41-236 (529)
215 PLN02222 phosphoinositide phos 98.9 1.7E-08 3.7E-13 106.3 15.3 105 261-368 451-563 (581)
216 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.2E-09 7E-14 85.0 7.3 87 450-542 1-90 (109)
217 PLN02228 Phosphoinositide phos 98.9 2.4E-08 5.3E-13 104.9 15.4 124 261-390 430-562 (567)
218 KOG0169 Phosphoinositide-speci 98.9 1.3E-08 2.8E-13 107.4 12.0 121 263-389 617-744 (746)
219 PLN02230 phosphoinositide phos 98.8 1.5E-08 3.2E-13 106.9 11.2 102 447-549 468-579 (598)
220 PLN02952 phosphoinositide phos 98.8 2.2E-08 4.7E-13 105.9 11.8 101 447-548 469-579 (599)
221 KOG1031 Predicted Ca2+-depende 98.8 1.4E-08 3.1E-13 102.5 9.8 124 262-393 3-140 (1169)
222 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.5E-08 3.3E-13 81.2 7.4 84 264-355 1-87 (109)
223 PLN02222 phosphoinositide phos 98.8 3.4E-08 7.4E-13 104.1 11.7 102 447-549 451-562 (581)
224 KOG0169 Phosphoinositide-speci 98.7 2.6E-08 5.6E-13 105.1 9.0 100 449-549 617-725 (746)
225 PLN02228 Phosphoinositide phos 98.7 9.5E-08 2.1E-12 100.5 11.2 102 447-549 430-542 (567)
226 PLN02270 phospholipase D alpha 98.7 9.8E-08 2.1E-12 102.9 10.2 100 446-548 6-124 (808)
227 KOG1264 Phospholipase C [Lipid 98.6 1.2E-07 2.6E-12 99.5 10.1 90 448-538 1065-1160(1267)
228 KOG1264 Phospholipase C [Lipid 98.6 1.6E-07 3.4E-12 98.6 10.6 125 262-393 1065-1193(1267)
229 PLN02352 phospholipase D epsil 98.6 3.2E-07 6.9E-12 98.8 12.8 121 261-394 9-135 (758)
230 KOG1328 Synaptic vesicle prote 98.6 1.2E-08 2.7E-13 105.5 1.8 94 262-355 947-1048(1103)
231 KOG2059 Ras GTPase-activating 98.6 8.4E-08 1.8E-12 99.6 6.9 120 269-389 138-276 (800)
232 KOG0905 Phosphoinositide 3-kin 98.4 1.9E-07 4.1E-12 101.7 4.4 107 261-367 1523-1634(1639)
233 KOG0905 Phosphoinositide 3-kin 98.4 3.7E-07 8E-12 99.5 6.0 102 447-549 1523-1631(1639)
234 KOG1031 Predicted Ca2+-depende 98.3 9.2E-07 2E-11 89.7 6.7 91 448-540 3-98 (1169)
235 KOG1327 Copine [Signal transdu 98.3 3.3E-06 7.2E-11 86.9 9.6 172 175-356 42-236 (529)
236 cd08683 C2_C2cd3 C2 domain fou 98.2 2.8E-06 6E-11 70.4 5.1 100 450-549 1-141 (143)
237 KOG1013 Synaptic vesicle prote 98.0 4.8E-06 1E-10 79.7 4.4 104 260-365 231-338 (362)
238 cd08684 C2A_Tac2-N C2 domain f 98.0 5.1E-06 1.1E-10 63.8 3.3 98 265-365 2-102 (103)
239 KOG3532 Predicted protein kina 98.0 3.3E-05 7E-10 80.2 9.5 227 58-293 81-358 (1051)
240 PLN02964 phosphatidylserine de 97.9 1.7E-05 3.7E-10 85.1 6.8 87 260-356 52-139 (644)
241 PLN02352 phospholipase D epsil 97.9 5E-05 1.1E-09 82.2 9.3 96 446-549 8-108 (758)
242 PF12416 DUF3668: Cep120 prote 97.7 0.0034 7.3E-08 62.7 19.0 258 264-543 2-298 (340)
243 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00019 4.2E-09 59.7 5.8 103 264-366 1-143 (143)
244 PLN02964 phosphatidylserine de 97.4 0.00022 4.8E-09 76.8 5.6 89 445-542 51-141 (644)
245 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00041 8.9E-09 53.5 5.4 85 452-538 3-92 (103)
246 KOG2060 Rab3 effector RIM1 and 97.3 0.00016 3.6E-09 70.6 2.7 104 445-549 266-375 (405)
247 KOG3837 Uncharacterized conser 97.1 0.00044 9.6E-09 68.3 3.4 124 261-389 366-503 (523)
248 KOG2060 Rab3 effector RIM1 and 97.0 0.00048 1E-08 67.4 3.0 110 259-369 266-380 (405)
249 PF15627 CEP76-C2: CEP76 C2 do 96.6 0.029 6.2E-07 49.2 11.0 129 260-391 7-152 (156)
250 cd08693 C2_PI3K_class_I_beta_d 96.5 0.02 4.4E-07 51.8 9.8 100 448-549 8-134 (173)
251 cd08398 C2_PI3K_class_I_alpha 96.4 0.028 6E-07 50.0 9.6 98 448-549 8-120 (158)
252 cd08380 C2_PI3K_like C2 domain 95.9 0.063 1.4E-06 47.8 9.6 101 448-549 8-121 (156)
253 PF10358 NT-C2: N-terminal C2 95.7 0.73 1.6E-05 40.2 15.4 122 261-392 6-138 (143)
254 cd08397 C2_PI3K_class_III C2 d 95.5 0.065 1.4E-06 47.8 8.1 82 468-549 29-121 (159)
255 KOG3837 Uncharacterized conser 95.5 0.0078 1.7E-07 59.8 2.3 93 446-538 365-473 (523)
256 cd04012 C2A_PI3K_class_II C2 d 95.5 0.073 1.6E-06 48.2 8.4 103 447-549 7-133 (171)
257 PF15627 CEP76-C2: CEP76 C2 do 95.3 0.093 2E-06 46.0 8.2 99 446-544 7-121 (156)
258 cd08399 C2_PI3K_class_I_gamma 95.0 0.18 3.8E-06 45.7 9.2 101 448-549 10-136 (178)
259 KOG1265 Phospholipase C [Lipid 94.9 0.061 1.3E-06 58.5 6.7 90 261-358 702-798 (1189)
260 KOG1265 Phospholipase C [Lipid 94.8 0.059 1.3E-06 58.6 6.4 87 445-538 700-794 (1189)
261 cd08398 C2_PI3K_class_I_alpha 94.4 1.1 2.3E-05 39.9 12.6 88 262-353 8-105 (158)
262 cd08693 C2_PI3K_class_I_beta_d 93.7 0.43 9.3E-06 43.2 8.9 90 262-353 8-119 (173)
263 cd08380 C2_PI3K_like C2 domain 93.4 0.59 1.3E-05 41.6 9.1 91 262-353 8-106 (156)
264 KOG1452 Predicted Rho GTPase-a 92.8 0.26 5.6E-06 47.5 6.1 80 260-343 49-130 (442)
265 cd08687 C2_PKN-like C2 domain 92.4 1.5 3.2E-05 34.6 8.7 86 281-388 7-92 (98)
266 PF12416 DUF3668: Cep120 prote 92.3 0.83 1.8E-05 45.9 9.3 95 450-549 2-109 (340)
267 PF10358 NT-C2: N-terminal C2 92.1 1.5 3.3E-05 38.2 9.9 92 447-542 6-108 (143)
268 cd08695 C2_Dock-B C2 domains f 92.1 1.6 3.4E-05 39.9 10.0 68 482-549 53-129 (189)
269 cd08397 C2_PI3K_class_III C2 d 92.1 0.63 1.4E-05 41.5 7.4 73 281-353 28-106 (159)
270 cd04012 C2A_PI3K_class_II C2 d 91.8 0.64 1.4E-05 42.0 7.3 92 262-353 8-118 (171)
271 PF00792 PI3K_C2: Phosphoinosi 91.8 0.55 1.2E-05 41.0 6.7 64 485-548 23-98 (142)
272 cd08695 C2_Dock-B C2 domains f 91.0 3 6.6E-05 38.1 10.6 56 297-352 53-112 (189)
273 cd08694 C2_Dock-A C2 domains f 90.6 2.8 6.1E-05 38.4 10.0 68 482-549 53-131 (196)
274 cd08694 C2_Dock-A C2 domains f 89.8 4.6 0.0001 37.0 10.7 56 297-352 53-114 (196)
275 smart00142 PI3K_C2 Phosphoinos 88.5 2.9 6.3E-05 34.0 7.9 73 450-522 13-92 (100)
276 cd08687 C2_PKN-like C2 domain 87.9 2.4 5.3E-05 33.4 6.5 66 469-540 9-74 (98)
277 PF00792 PI3K_C2: Phosphoinosi 87.6 3 6.6E-05 36.3 8.0 56 299-354 22-85 (142)
278 PF14429 DOCK-C2: C2 domain in 87.0 2.1 4.6E-05 39.2 7.0 57 297-353 59-120 (184)
279 cd08399 C2_PI3K_class_I_gamma 86.7 4 8.7E-05 37.0 8.3 72 263-336 11-88 (178)
280 PF15625 CC2D2AN-C2: CC2D2A N- 85.5 16 0.00035 32.8 11.7 104 282-389 36-161 (168)
281 KOG1452 Predicted Rho GTPase-a 84.7 2.4 5.1E-05 41.1 6.0 78 445-525 48-127 (442)
282 KOG1329 Phospholipase D1 [Lipi 83.1 2.8 6.1E-05 46.6 6.6 107 283-394 138-245 (887)
283 smart00142 PI3K_C2 Phosphoinos 79.9 9.2 0.0002 31.0 7.2 74 264-337 13-92 (100)
284 PF11618 DUF3250: Protein of u 78.8 8.7 0.00019 31.6 6.7 87 296-389 10-105 (107)
285 PF14429 DOCK-C2: C2 domain in 77.7 6.7 0.00014 35.9 6.4 56 482-537 59-120 (184)
286 cd08697 C2_Dock-D C2 domains f 77.5 28 0.0006 31.8 10.1 56 297-352 56-122 (185)
287 cd08679 C2_DOCK180_related C2 76.3 8.6 0.00019 34.9 6.7 53 299-352 55-114 (178)
288 PF15625 CC2D2AN-C2: CC2D2A N- 75.3 14 0.0003 33.2 7.7 69 470-540 38-108 (168)
289 cd08696 C2_Dock-C C2 domains f 74.3 11 0.00023 34.3 6.6 56 297-352 54-117 (179)
290 KOG2238 Uncharacterized conser 72.6 1.2 2.5E-05 48.6 -0.1 89 69-157 334-426 (795)
291 cd08679 C2_DOCK180_related C2 71.0 14 0.00031 33.5 6.7 65 484-549 55-131 (178)
292 PF15179 Myc_target_1: Myc tar 62.7 1.6 3.5E-05 38.7 -1.1 25 1-25 23-47 (197)
293 PF01102 Glycophorin_A: Glycop 62.3 2.2 4.7E-05 35.9 -0.4 17 4-20 66-82 (122)
294 PF11618 DUF3250: Protein of u 58.4 13 0.00029 30.5 3.6 61 482-543 11-78 (107)
295 cd08697 C2_Dock-D C2 domains f 56.1 37 0.0008 31.0 6.4 66 482-547 56-136 (185)
296 PF06295 DUF1043: Protein of u 54.3 11 0.00024 32.2 2.6 19 4-22 3-21 (128)
297 KOG0694 Serine/threonine prote 50.4 4.1 9E-05 44.0 -0.7 81 282-366 27-108 (694)
298 PF12732 YtxH: YtxH-like prote 50.0 8 0.00017 29.4 1.0 20 3-22 1-20 (74)
299 cd08696 C2_Dock-C C2 domains f 49.3 55 0.0012 29.7 6.4 56 482-537 54-118 (179)
300 PF04478 Mid2: Mid2 like cell 44.7 10 0.00022 33.1 0.8 21 2-22 53-73 (154)
301 PF01034 Syndecan: Syndecan do 42.7 8 0.00017 28.2 -0.0 22 2-23 13-34 (64)
302 KOG4269 Rac GTPase-activating 41.0 18 0.00038 40.5 2.1 86 260-352 757-854 (1112)
303 PTZ00447 apical membrane antig 39.4 3.5E+02 0.0076 27.2 10.4 111 261-387 57-171 (508)
304 PF14186 Aida_C2: Cytoskeletal 39.0 1.7E+02 0.0036 25.7 7.4 99 447-549 12-122 (147)
305 PF01102 Glycophorin_A: Glycop 38.7 7.5 0.00016 32.8 -0.8 21 2-22 68-88 (122)
306 PF14851 FAM176: FAM176 family 38.0 15 0.00033 32.3 0.9 22 3-24 26-47 (153)
307 PF07162 B9-C2: Ciliary basal 35.6 3.2E+02 0.007 24.4 10.6 80 450-535 4-101 (168)
308 PRK11677 hypothetical protein; 35.4 37 0.0008 29.2 2.8 17 4-20 7-23 (134)
309 PF07162 B9-C2: Ciliary basal 34.9 3.3E+02 0.0072 24.3 10.9 79 267-351 7-101 (168)
310 PF12732 YtxH: YtxH-like prote 33.9 27 0.00058 26.5 1.6 18 2-19 4-21 (74)
311 KOG4092 Mitochondrial F1F0-ATP 33.2 27 0.00058 27.6 1.5 35 56-90 36-70 (108)
312 cd05137 RasGAP_CLA2_BUD2 CLA2/ 30.6 65 0.0014 33.3 4.3 43 343-389 1-44 (395)
313 PF10409 PTEN_C2: C2 domain of 30.1 3.4E+02 0.0073 22.9 10.1 88 449-538 5-97 (134)
314 PF12597 DUF3767: Protein of u 30.0 33 0.00071 28.8 1.7 18 2-19 43-60 (118)
315 PF06219 DUF1005: Protein of u 29.7 5.2E+02 0.011 26.9 10.1 64 326-390 95-168 (460)
316 KOG4027 Uncharacterized conser 29.7 3.3E+02 0.0073 24.0 7.6 72 281-352 24-109 (187)
317 COG4064 MtrG Tetrahydromethano 26.4 25 0.00055 25.9 0.3 15 2-16 51-65 (75)
318 KOG1329 Phospholipase D1 [Lipi 26.0 52 0.0011 37.1 2.7 71 469-541 138-210 (887)
319 PF04971 Lysis_S: Lysis protei 25.9 36 0.00078 25.3 1.0 15 5-19 36-50 (68)
320 KOG2419 Phosphatidylserine dec 25.1 18 0.00038 38.9 -0.9 72 262-337 280-356 (975)
321 KOG0904 Phosphatidylinositol 3 23.5 3.2E+02 0.007 31.1 8.0 99 448-549 343-470 (1076)
322 COG4980 GvpP Gas vesicle prote 22.7 41 0.00088 28.0 0.9 21 2-22 6-26 (115)
323 KOG0694 Serine/threonine prote 21.6 84 0.0018 34.5 3.2 52 469-523 28-79 (694)
324 PF14023 DUF4239: Protein of u 21.6 1.6E+02 0.0035 27.2 4.9 23 4-26 4-26 (209)
325 COG4943 Predicted signal trans 21.2 36 0.00079 35.6 0.4 36 4-39 242-277 (524)
326 cd07469 CRD_TK_ROR_related Cys 20.9 2.4E+02 0.0052 24.7 5.3 44 61-105 23-67 (147)
327 COG3887 Predicted signaling pr 20.2 79 0.0017 34.1 2.6 51 50-104 77-128 (655)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=2.3e-54 Score=459.72 Aligned_cols=460 Identities=26% Similarity=0.434 Sum_probs=365.3
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCcceEEEEEEecCCCCceeeeEEEEeC-CCCeEEEEEE
Q 008910 66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE 144 (549)
Q Consensus 66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~~~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~ 144 (549)
.|+|++||||.+|+++||.+++.+++.+.+.+|+.|.+..|+||+++.+.+||||++||+|.+||.|+. +.+.+.||++
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 478999999999999999999999999999999999999999999999999999999999999999987 6799999999
Q ss_pred EEEec---------------CceEEEEEEe--eec-eeeeEEEEEEEEEEEEEEEeecCCCCCCceeeEEEEecccceee
Q 008910 145 MQWDA---------------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD 206 (549)
Q Consensus 145 ~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~l~ 206 (549)
+.+.- ++.|.|.++. .+| .++||.|+++.|.|++|++++ |++.+|++..+.++|++.|.+|
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d 376 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD 376 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence 99962 3456777753 355 789999999999999999999 9999999999999999999999
Q ss_pred EEEEEcc-----cCcccCcchHHHHHHHHHHHhhccccccceeeccCC---CCCCcccccCceeEEEEEEEEcccccccC
Q 008910 207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPIL---PGDYSELELKPVGTLEVKLVQAKGLTNKD 278 (549)
Q Consensus 207 f~~~~~g-----~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~ip~~---~~~~~~~~~~~~g~L~V~v~~a~~L~~~d 278 (549)
|.+.++| .||+.||||+.|++++|...++.++++|+.+++++. .++ ...+.|+|.|+|.+|++|...+
T Consensus 377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~----s~~aIGVv~vkI~sa~~lk~~d 452 (1227)
T COG5038 377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD----SGTAIGVVEVKIKSAEGLKKSD 452 (1227)
T ss_pred EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc----cCCeeEEEEEEEeeccCccccc
Confidence 9999987 378999999999999999999999999999998763 232 3368899999999999999988
Q ss_pred --CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCC
Q 008910 279 --LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356 (549)
Q Consensus 279 --~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~ 356 (549)
..+..|||+.+... +....||++.+++.||+|||+|...+... ++.|.++|||.+....|+.+|++.++|..|..
T Consensus 453 ~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~ 529 (1227)
T COG5038 453 STINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQ 529 (1227)
T ss_pred ccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhh
Confidence 66899999999965 23456999999999999999998888654 67999999998888999999999999999876
Q ss_pred CceeEE-EEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCC---CCCC-------cchHHHH------------
Q 008910 357 GKVKDV-WLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFA---PNFS-------MTSLEKV------------ 413 (549)
Q Consensus 357 ~~~~~~-w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~---~~~~-------~~~~~~~------------ 413 (549)
...... -+.+ ..+.+..|+|+..+.|+|.........+.. ++.. +...+..
T Consensus 530 ~~~~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a 603 (1227)
T COG5038 530 NPVKKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSA 603 (1227)
T ss_pred ccccccceeee------eccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeE
Confidence 554432 3333 346688899999999999866543222111 0000 0000000
Q ss_pred ---------hh-----ccccc--------------------ccCCC-CCc-------hhhhhhh----------hh----
Q 008910 414 ---------LT-----NGEKA--------------------LKSGA-NGT-------EAIELEK----------DA---- 437 (549)
Q Consensus 414 ---------~~-----~~~~~--------------------~~~~~-~~~-------~~~~~~~----------~~---- 437 (549)
.. ...+. ...+. .+. ..++.-. ..
T Consensus 604 ~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg 683 (1227)
T COG5038 604 ELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKG 683 (1227)
T ss_pred EEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhccccceEEEEcCCCcc
Confidence 00 00000 00000 000 0000000 00
Q ss_pred ----hhhcccc-------------ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccE
Q 008910 438 ----SQKRREV-------------IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQT 500 (549)
Q Consensus 438 ----~~~~~~~-------------~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~ 500 (549)
+..|++. ...|.++|.|..|.++......+.+|||+++.+++ ..++||-....+.||.||+.
T Consensus 684 ~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~-~~k~rti~~~~~~npiw~~i 762 (1227)
T COG5038 684 RIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNN-LVKYRTIYGSSTLNPIWNEI 762 (1227)
T ss_pred eEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEecc-eeEEEEecccCccccceeee
Confidence 0001111 34689999999999999877888999999999886 57888888889999999998
Q ss_pred EEEEEecCCCCeEEEEEEECCCCCCc-eeEEEEEeccccccc
Q 008910 501 FDFVVEDGLHDMLIAEVWDHDTFGKR-YLSRYFQNRKTWLHD 541 (549)
Q Consensus 501 f~f~v~~~~~~~l~i~V~d~~~~~~d-~lG~~~i~l~~l~~~ 541 (549)
..-++..+ .+.+.++++|....++| .+|++.+++++++.+
T Consensus 763 ~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k 803 (1227)
T COG5038 763 LYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKK 803 (1227)
T ss_pred EEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeec
Confidence 88787754 45699999999999886 999999999999873
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.6e-31 Score=271.14 Aligned_cols=224 Identities=32% Similarity=0.480 Sum_probs=193.5
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~d 334 (549)
|......|.|+|++|++|+.+|..|.+||||++++.|+...+.+|++.++++||+|||+|.|.+.. .....|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 334668899999999999999977889999999999888889999999999999999999999653 356799999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHHh
Q 008910 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL 414 (549)
Q Consensus 335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 414 (549)
+|+++++++||++.++|..+........|.++...... .....|+|.++++|.|
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p------------------------ 295 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLP------------------------ 295 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeec------------------------
Confidence 99999999999999999998877778899999865432 1222389999999985
Q ss_pred hcccccccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccC
Q 008910 415 TNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVND 491 (549)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~ 491 (549)
..|.|+|.|++|+||...+..+.+||||++++-. ...++||.++++
T Consensus 296 -------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~ 344 (421)
T KOG1028|consen 296 -------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK 344 (421)
T ss_pred -------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC
Confidence 2389999999999999999999999999999842 245789999999
Q ss_pred CCCCccccEEEEEEec--CCCCeEEEEEEECCCCCC-ceeEEEEEeccc
Q 008910 492 CLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 492 t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~ 537 (549)
+.||+|||+|.|.+.. ..+..|.|+|||++.++. ++||++.++...
T Consensus 345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999999999998863 244579999999999987 699999998775
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=3.4e-22 Score=169.34 Aligned_cols=119 Identities=24% Similarity=0.446 Sum_probs=103.7
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 339 (549)
.|.|.|+|++|++++..+ .|++||||++.++ +++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999988777 7999999999997 67889999865 89999999999999764 458999999999999
Q ss_pred CCceeEEEEEECc-ccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 340 ~d~~lG~~~v~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
+|++||++.+++. .+..+...+.|++|.+.. .....|+|+++++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~----~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQ----GEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCcc----CCCCceEEEEEEeC
Confidence 9999999999996 577888889999997532 34567999999987
No 4
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.85 E-value=3.4e-21 Score=196.66 Aligned_cols=218 Identities=22% Similarity=0.331 Sum_probs=174.6
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 340 (549)
...|.|+|.+|+||+..+..|.+||||.+.+. .....||.++.+++.|.|.|+|.|.+... -..|.|.|||.| +++
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~ 79 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKR 79 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccc
Confidence 35689999999999999999999999999997 35689999999999999999999999754 458999999999 899
Q ss_pred CceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHHhhccccc
Q 008910 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420 (549)
Q Consensus 341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (549)
|+.||.+.+.=++|......+.|+.|++- +.+....|++++++.+.+....
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~~-------------------------- 130 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQS-------------------------- 130 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccCC--------------------------
Confidence 99999999999999888889999999753 4567889999999998742211
Q ss_pred ccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc--eeeecccccCCCCCccc
Q 008910 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWN 498 (549)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~--~~~kT~~~~~t~nP~wn 498 (549)
.-+...+++++++.+.. ++.+|||+++...+.. +..+|.++++|.+|.||
T Consensus 131 ---------------------------~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~ 182 (800)
T KOG2059|consen 131 ---------------------------SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD 182 (800)
T ss_pred ---------------------------CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence 11223344444555444 3448999999986532 34789999999999999
Q ss_pred cEEEEEEecC---------------CCCeEEEEEEEC-CCCC-CceeEEEEEeccccc
Q 008910 499 QTFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KRYLSRYFQNRKTWL 539 (549)
Q Consensus 499 e~f~f~v~~~---------------~~~~l~i~V~d~-~~~~-~d~lG~~~i~l~~l~ 539 (549)
|.|.|.+... ..-.|.+++|++ +... ++|+|++.+++..+.
T Consensus 183 Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~ 240 (800)
T KOG2059|consen 183 EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLR 240 (800)
T ss_pred hheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhh
Confidence 9999998643 233688899984 4444 469999999999886
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=9.2e-21 Score=163.75 Aligned_cols=119 Identities=21% Similarity=0.477 Sum_probs=103.1
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec-----CCCCEEEEEEEECCCC
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI 338 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~v~d~~~~ 338 (549)
++|+|++|+||+.++..|.+||||++.++ .++++|+++++++||+|||+|.|.+.. .....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47999999999999988999999999997 678899999999999999999999976 3567899999999998
Q ss_pred CCCceeEEEEEECcccC--CCceeEEEEEccccccccCCCceeeEEEEEEE
Q 008910 339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (549)
Q Consensus 339 ~~d~~lG~~~v~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~ 387 (549)
++|++||++.++++++. .+.....|++|.... ....+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~--~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP--GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC--CCCccccceEEEEeC
Confidence 88999999999999987 566778999997432 134567899999863
No 6
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=1.9e-20 Score=160.02 Aligned_cols=117 Identities=35% Similarity=0.567 Sum_probs=103.0
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 340 (549)
|.|+|+|++|++|++.+..+.+||||++.++ .++++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999989999999999997 5678888874 5799999999999998766678999999999875
Q ss_pred CceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
|++||++.+++.++..+.....|++|.. .++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence 8999999999999877767789999953 34678999999986
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=4.4e-20 Score=158.32 Aligned_cols=121 Identities=33% Similarity=0.527 Sum_probs=107.0
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 342 (549)
+|+|+|++|++|+..|..|.+||||++.++ +...++|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999986 23578999999999999999999998765 468999999999988999
Q ss_pred eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
+||++.+++.++..+...+.|++|... ...+..|+|++.+.|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence 999999999999988889999999642 12467899999999864
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=7.2e-20 Score=156.10 Aligned_cols=116 Identities=30% Similarity=0.446 Sum_probs=100.9
Q ss_pred EEEEEEEEccc---ccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910 263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (549)
Q Consensus 263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 339 (549)
.|.|+|++|++ |..+|..|.+||||++.++ .++.+|+++++++||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 8889999999999999997 67889999999999999999999998754 48999999999863
Q ss_pred ------CCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEE
Q 008910 340 ------SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL 384 (549)
Q Consensus 340 ------~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l 384 (549)
+|++||++.+++.++..+...+.|++|.... ....+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence 8999999999999999999999999997432 123566788765
No 9
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=1.3e-19 Score=153.24 Aligned_cols=108 Identities=23% Similarity=0.387 Sum_probs=93.1
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEe----eCCCCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEEEEC
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD 335 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~ 335 (549)
.|+|+|++|++|+..+ .|.+||||++++. +...++++|+++++|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999888 4999999999984 2233467899999999999999999999742 345799999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeEEEEEcccccc
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~ 371 (549)
+..++|++||++.+++.++..++....|++|.+...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 987889999999999999998888999999976553
No 10
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=1.4e-19 Score=154.80 Aligned_cols=116 Identities=27% Similarity=0.537 Sum_probs=102.8
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|+|+|++|++|++.+..+.+||||++++.+.+..+++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999874445678999999999999999999999766566899999999988 8999
Q ss_pred eEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
||++.+++.++..+.....|++|.+ +..|++++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEEEEe
Confidence 9999999999999989999999842 357888888765
No 11
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=1.8e-19 Score=157.05 Aligned_cols=119 Identities=25% Similarity=0.464 Sum_probs=103.1
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 338 (549)
...|.|+|+|++|++|++.+..|.+||||++.++ .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 4679999999999999999989999999999986 6789999999999999999999999877777999999999998
Q ss_pred CCCceeEEEEEECcccCC-----CceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
++|++||++.+++.++.. ......|..+ ..+..|+|++++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence 899999999999999865 2222344444 35678999999876
No 12
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=4.8e-20 Score=153.42 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=92.1
Q ss_pred cccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC-CCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (549)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 332 (549)
.|....|.|+|+|++|++|+ . .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+... ....|.|.|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 34567799999999999998 3 467999999999853 33578899999999999999999998643 556899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (549)
||+|+++++++||++.++++++..+...++|..|
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999988666677788654
No 13
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=1.8e-19 Score=153.40 Aligned_cols=115 Identities=29% Similarity=0.445 Sum_probs=104.1
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 342 (549)
+++|+|++|++|+.++..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999986 67789999999999999999999998766779999999999988999
Q ss_pred eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
+||++.+++.++..+...+.|++|.+ ..|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence 99999999999998888999999952 259999998874
No 14
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.3e-19 Score=158.74 Aligned_cols=125 Identities=22% Similarity=0.405 Sum_probs=106.5
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 341 (549)
.|+|+|++|++|+.++..|.+||||++.++ ++..+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999998 57889998866 69999999999999876667999999999988889
Q ss_pred ceeEEEEEECcccCCC----ceeEEEEEccccccc---cCCCceeeEEEEEEEEee
Q 008910 342 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~----~~~~~w~~L~~~~~~---~~~~~~~G~l~l~l~~~p 390 (549)
++||++.++|.++..+ ...+.|++|.+.... .+..+.+|+|+|.+.|.+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998643 456899999865321 133467899999999963
No 15
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.9e-19 Score=155.72 Aligned_cols=121 Identities=29% Similarity=0.412 Sum_probs=104.0
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC---CCEEEEEEEECCCCC
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ 339 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~ 339 (549)
.|+|+|++|++|...+..|.+||||++.++ .+.++|+++.++.||.|||.|.|.+.++. ...|.|.|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999987 57789999999999999999999987542 358999999999876
Q ss_pred -CCceeEEEEEECcccC-CCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 340 -~d~~lG~~~v~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
+|++||++.++++++. .+.....|+.|.+.. ..++.+|+|++++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence 7999999999999987 567788999997532 2345789999998763
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=2.7e-19 Score=155.28 Aligned_cols=123 Identities=33% Similarity=0.539 Sum_probs=105.9
Q ss_pred eEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 339 (549)
|+|+|+|++|++|+..+. .+.+||||++.++ .++++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999988 8899999999986 67889999999999999999999998766779999999999988
Q ss_pred CCceeEEEEEECcccC---CCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
++++||++.+++.++. .......|+.|..... .......|+|++++.|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence 8999999999999986 3344689999975422 2334578999999865
No 17
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=5.6e-19 Score=150.89 Aligned_cols=119 Identities=29% Similarity=0.450 Sum_probs=101.5
Q ss_pred EEEEEEEcccccccC-CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910 264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (549)
Q Consensus 264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 342 (549)
|.|+|++|+||+.++ ..|.+||||++.++ ....++|+++++|+||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999986 23468999999999999999999999754 468999999999999999
Q ss_pred eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
+||.+.++++++..+...+.|++|++.. ...+..|+|++++.+
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence 9999999999998888889999997542 234568999998764
No 18
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=4.5e-19 Score=152.56 Aligned_cols=121 Identities=24% Similarity=0.486 Sum_probs=105.4
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 342 (549)
.|+|+|++|++|..++..+.+||||+++++ +..++|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 489999999999999988899999999986 56789999999999999999999998766678999999999988899
Q ss_pred eeEEEEEECcccCCCceeEEEEEccccccc-cCCCceeeEEEEEE
Q 008910 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL 386 (549)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~l~l~l 386 (549)
+||++.+++.++..+...+.|+.|.+.... ...++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999877777899999764322 23567789999875
No 19
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=2.8e-19 Score=152.99 Aligned_cols=105 Identities=27% Similarity=0.456 Sum_probs=93.9
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEE-e--cCCCCEEEEEEEEC
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD 335 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~v~d~ 335 (549)
.|.|.|+|++|++|+.++ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 589999999999999999 8999999999998654 3468999999999999999999987 2 33566899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (549)
+..+++++||++.++|.++..+...+.|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999888778899987
No 20
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=1e-18 Score=150.89 Aligned_cols=122 Identities=30% Similarity=0.475 Sum_probs=104.3
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|.|+|++|++|+. ..|.+||||++++. ...++++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 67899999999986 22456899999999999999999999854 35689999999999888999
Q ss_pred eEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (549)
Q Consensus 344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (549)
||++.++++++..+.....|++|.+... ...+..|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence 9999999999988887889999975321 235679999999999753
No 21
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=8.1e-19 Score=153.20 Aligned_cols=109 Identities=26% Similarity=0.436 Sum_probs=95.8
Q ss_pred eeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEE-ECC
Q 008910 261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DDE 336 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~~ 336 (549)
.|.|.|+|++|+||..++ ..|.+||||++++.+.+. .++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 568899999999986543 3789999999999999999999998 56779999999 678
Q ss_pred CCCCCceeEEEEEECcccCCCceeEEEEEccccc
Q 008910 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (549)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~ 370 (549)
.+.++++||++.++|+++..+.....|++|.+..
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 8888999999999999997777788999997643
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=1.6e-18 Score=149.42 Aligned_cols=122 Identities=21% Similarity=0.376 Sum_probs=102.1
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 340 (549)
...|+|+|++|+||+.+ +.+||||++.++ +.+..+|++ .++.||.|||+|.|.+..+..+.+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999996 234578887 468999999999998765544689999999999999
Q ss_pred CceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
|++||++.++|.++..+...+.|+.|.+.. ....+..|+|++++.|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888889999997642 124567799999999974
No 23
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=7.4e-19 Score=150.91 Aligned_cols=115 Identities=35% Similarity=0.634 Sum_probs=101.7
Q ss_pred eEEEEEEEEcccccccCC------CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910 262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 335 (549)
|+|+|+|++|++|+..+. .|.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998875 3689999999997 5789999999999999999999999876678999999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
+.. ++++||++.+++.++..+...+.|++|.. ...|+|++++.|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEEEeC
Confidence 987 89999999999999987777899999942 257999998764
No 24
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=3.2e-19 Score=153.80 Aligned_cols=96 Identities=34% Similarity=0.618 Sum_probs=89.5
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 339 (549)
..|.|+|+|.+|.+|..+|..+++||||.+.++ +++.+|+++++++||+|||.|.|.+.++ ...|++.|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFS 79 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCC
Confidence 579999999999999999988999999999998 8899999999999999999999999987 459999999999999
Q ss_pred CCceeEEEEEECcccCCCce
Q 008910 340 SSELIGCAQVRLCELEPGKV 359 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~~ 359 (549)
+||+||.++|+|..+.....
T Consensus 80 ~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 80 SDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred cccccceeeeccHHHHHHhh
Confidence 99999999999998865543
No 25
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.80 E-value=2.3e-17 Score=177.97 Aligned_cols=320 Identities=25% Similarity=0.347 Sum_probs=212.1
Q ss_pred cchHHHHHHHHHHHhhccccccce-------eec---cCC-CCC-Ccc-cccCceeEEEEEEEEcccccccCCCCCCCcE
Q 008910 220 PGLSDSIEATIHDAIEDSITWPVR-------KIV---PIL-PGD-YSE-LELKPVGTLEVKLVQAKGLTNKDLIGKSDPY 286 (549)
Q Consensus 220 P~l~~~~~~~i~~~i~~~~~~P~~-------~~i---p~~-~~~-~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpy 286 (549)
+....-+...|.......++.|.+ ++. |+. .++ .+. ....+.|.++|.|..|.+|.+....+++|||
T Consensus 656 ~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPy 735 (1227)
T COG5038 656 ATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPY 735 (1227)
T ss_pred ccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccc
Confidence 333334455666666666666655 111 321 111 111 1346899999999999999988888999999
Q ss_pred EEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCC---ceeEEE
Q 008910 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG---KVKDVW 363 (549)
Q Consensus 287 v~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~---~~~~~w 363 (549)
+++.+. +..++||-....++||.|++.....+..+ .+.+.+++.|+...+.|..+|++.++++++... ......
T Consensus 736 a~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~ 812 (1227)
T COG5038 736 ATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMET 812 (1227)
T ss_pred eEEEec--ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEe
Confidence 999987 35678888889999999999888888776 557999999999999999999999999987541 111111
Q ss_pred EEc---cccccccCCCceeeEEEEEEEEeecccCCccc-------------------------CCCCC--------CCCc
Q 008910 364 LKL---VKDLDVQRDTKYRGQVHLELLYCPFGMENVFT-------------------------NPFAP--------NFSM 407 (549)
Q Consensus 364 ~~L---~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-------------------------~~~~~--------~~~~ 407 (549)
..= ...+. ..+.+..|.+.+.+.|.|........ .+... ..+.
T Consensus 813 i~g~~~t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 813 IDGAEETGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred ecCcccccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 110 01111 11456789999999999865432210 00000 0000
Q ss_pred ---ch---------HHHHhhccc---------------------------cc----cc----CCCCCchhhh--------
Q 008910 408 ---TS---------LEKVLTNGE---------------------------KA----LK----SGANGTEAIE-------- 432 (549)
Q Consensus 408 ---~~---------~~~~~~~~~---------------------------~~----~~----~~~~~~~~~~-------- 432 (549)
.+ +..+++-.+ ++ .. ....+.....
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 01 111111000 00 00 0000000000
Q ss_pred ------------hhh---h--------hhhh--------------------c----------cccccccEEEEEEEEeec
Q 008910 433 ------------LEK---D--------ASQK--------------------R----------REVIIRGVLSVTVILAEN 459 (549)
Q Consensus 433 ------------~~~---~--------~~~~--------------------~----------~~~~~~g~L~v~v~~a~~ 459 (549)
.+. + .++. + .....+|.|.|.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 000 0 0000 0 001348999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ceeEEEEEecccc
Q 008910 460 LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYLSRYFQNRKTW 538 (549)
Q Consensus 460 L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l 538 (549)
|+..+.+|.+||||++.+.. +..++|+++++|+||+|||.+...+.+-..+.+.+.|+|++...+ |.||.+.+++..+
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l 1130 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKL 1130 (1227)
T ss_pred CcccccCCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhc
Confidence 99999999999999999986 348999999999999999999999987788899999999998776 7999999999998
Q ss_pred cccccc
Q 008910 539 LHDGSE 544 (549)
Q Consensus 539 ~~~~~~ 544 (549)
..++..
T Consensus 1131 ~~~~~~ 1136 (1227)
T COG5038 1131 EPGGTT 1136 (1227)
T ss_pred CcCCcc
Confidence 766543
No 26
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=7e-19 Score=151.41 Aligned_cols=109 Identities=23% Similarity=0.444 Sum_probs=95.7
Q ss_pred CceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY 333 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 333 (549)
+..+.|.|+|++|+||+.++.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 4568999999999999999975 899999999998654 345799999999999999999999864 34568999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
|++..+++++||++.++|.++..+.....|++|+
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999998777788999873
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.2e-18 Score=148.92 Aligned_cols=114 Identities=23% Similarity=0.445 Sum_probs=98.4
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 342 (549)
.|.|+|++|++|+.+ .+||||++.++ .+..+|++++++.||+|||+|.|.+.++..+.|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 388999999999877 78999999997 5678999999999999999999998776677999999999976 789
Q ss_pred eeEEEEEECcccCCC-----ceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 343 LIGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 343 ~lG~~~v~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
+||++.++++++... ...+.|++|.... ..+.+|+|++++.|
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF 119 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence 999999999998642 2356999997642 35788999999987
No 28
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.79 E-value=9.1e-19 Score=150.91 Aligned_cols=110 Identities=35% Similarity=0.559 Sum_probs=98.6
Q ss_pred cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 335 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~ 335 (549)
.+..|.|.|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 345799999999999999999889999999999976656789999999999999999999998643 356899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
+.++++++||++.++++++..+...+.|++|+
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99889999999999999998777889999985
No 29
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=2.9e-18 Score=153.31 Aligned_cols=123 Identities=27% Similarity=0.485 Sum_probs=103.9
Q ss_pred eeEEEEEEEEcccccccC------------------------------CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCC
Q 008910 261 VGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP 310 (549)
.|.|.|+|.+|++|+++| ..|.+||||++.++ +.+..+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence 599999999999999987 24678999999997 2345799999999999
Q ss_pred eeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 311 ~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
+|||+|.|.+.+. .+.|.|.|||++..+ +++||.+.++++++..+...+.|++|.... .+..+..|+|++++.|.
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence 9999999998765 468999999999874 689999999999998888889999997542 22345578999999883
No 30
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=1.5e-18 Score=149.17 Aligned_cols=109 Identities=18% Similarity=0.348 Sum_probs=95.8
Q ss_pred cCceeEEEEEEEEcccccccCC-CCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 332 (549)
....|.|.|+|++|+||+.++. .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+... ....|.|.|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3567999999999999998875 4789999999998654 3468899999999999999999998643 455899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (549)
||++..+++++||++.+++.++......+.|++|
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9999999999999999999999888889999987
No 31
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=2.3e-18 Score=148.52 Aligned_cols=122 Identities=28% Similarity=0.505 Sum_probs=102.1
Q ss_pred eeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910 261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 339 (549)
.|.|.|+|++|++|+..+ ..+.+||||++.++.. .+.++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467999999999722 36799999999999999999999987 44679999999999988
Q ss_pred CCceeEEEEEECcccCCCceeE-EEEEccccccccCCCceeeEEEEEEEEee
Q 008910 340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
+|++||++.+++.++..+...+ .|..+. .+++..|+|++++.|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence 9999999999999998766554 344432 35567899999999975
No 32
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.78 E-value=5.8e-18 Score=144.85 Aligned_cols=118 Identities=33% Similarity=0.595 Sum_probs=102.2
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 341 (549)
|.|.|+|++|++|+..+..+.+||||++++. ...++|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999987 5568999999999999999999998654 46899999999988889
Q ss_pred ceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
++||++.+++.++..+. ..|+.|... ....+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEEEEe
Confidence 99999999999987654 579998643 2244579999999876
No 33
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=6.7e-18 Score=147.45 Aligned_cols=122 Identities=27% Similarity=0.476 Sum_probs=102.3
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 338 (549)
.|+|+|++|++|+.++..|.+||||++++.... ...++|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 389999999999999988999999999997321 1257899999999999999999998653 46899999999998
Q ss_pred CCCceeEEEEEECcccCCCc------eeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
+++++||++.+++.++..+. ....|++|.+. ...++..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEEEee
Confidence 89999999999999986543 24689999753 2245679999999987
No 34
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=3.4e-18 Score=147.36 Aligned_cols=109 Identities=32% Similarity=0.535 Sum_probs=97.6
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECC
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE 336 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~ 336 (549)
...|.|.|+|++|++|+.++..+.+||||++++.+...+.++|++++++.||+|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 45689999999999999999889999999999986666688999999999999999999998642 3458999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
.++++++||++.+++.++..+...+.|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9989999999999999998888889999974
No 35
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.77 E-value=2.5e-18 Score=146.70 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=95.4
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 331 (549)
|.+..+.|.|+|++|+||+.++..+.+||||++++.|+.+ .+++|++++++.||+|||+|.|.+... ....|.+.
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 4456799999999999999998888999999999987663 478999999999999999999998643 56689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCC-ceeEEEEEc
Q 008910 332 IYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL 366 (549)
Q Consensus 332 v~d~~~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L 366 (549)
|||++..+++++||++.++|.++... .....|++|
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999999998544 456778865
No 36
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=4.6e-18 Score=149.45 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=90.0
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEe---------------cCCC
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST 325 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~---------------~~~~ 325 (549)
.|.|+|++|++|.. ..|.+||||++++.+.. .++++|++++++.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999997 46899999999998432 25688999999999999999999985 1223
Q ss_pred CEEEEEEEECCCCCCCceeEEEEEECcccCCC-ceeEEEEEccccc
Q 008910 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL 370 (549)
Q Consensus 326 ~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L~~~~ 370 (549)
..|.|.|||++..++|++||++.+++.++..+ .....||+|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 57999999999888999999999999999876 5678999997653
No 37
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.76 E-value=7e-18 Score=140.45 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=77.8
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--CceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~ 521 (549)
..+.|+|+|++|+||+ . .|.+||||++++.. +..+++|+++++|+||+|||+|.|.+.. .....|.++|||+|
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 3488999999999998 2 35689999999953 3357799999999999999999999864 35568999999999
Q ss_pred CCCC-ceeEEEEEecccc
Q 008910 522 TFGK-RYLSRYFQNRKTW 538 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l 538 (549)
.+++ |+||++.+++.++
T Consensus 89 rfs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 89 RFSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCCceEEEEEEccccc
Confidence 9987 7999999999986
No 38
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=6.5e-18 Score=145.82 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=93.9
Q ss_pred cCceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEE-Ee--cCCCCEEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VE--DESTQHLVVRIY 333 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~v~ 333 (549)
....+.|.|+|++|++|+..+.. +.+||||++.+.+...+++||++++++.||.|||+|.|. +. +.....|.++||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 34568999999999999998876 899999999998766677899999999999999999993 43 223457999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCC--ceeEEEEEcc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV 367 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~ 367 (549)
|++.+++|++||++.++|.++... .....|++|+
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999999999999999999998543 6678999885
No 39
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=2.5e-18 Score=144.84 Aligned_cols=103 Identities=26% Similarity=0.511 Sum_probs=89.6
Q ss_pred eEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 008910 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 337 (549)
|+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975445678999999999999999999987643 34689999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
.++|++||++.+++.++.. ...|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 9899999999999999873 35677653
No 40
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=7.1e-18 Score=145.19 Aligned_cols=109 Identities=20% Similarity=0.421 Sum_probs=93.8
Q ss_pred cCceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 332 (549)
....+.|.|+|++|+||+.++.. |.+||||++++.|.. ..++||++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 34568999999999999999875 899999999998765 3467999999999999999999998643 356899999
Q ss_pred EECCCCCCCceeEEEEEECcccCC---CceeEEEEEc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEP---GKVKDVWLKL 366 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~---~~~~~~w~~L 366 (549)
||++.++++++||++.|+|.++.. +.....||+|
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999998999999999999999854 3456789987
No 41
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.76 E-value=2.2e-17 Score=142.48 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=103.1
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 339 (549)
|.++|+|+|++|++|...+..|.+||||++.++ ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999987 6689999999999999999999988765 56899999999886
Q ss_pred CCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910 340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
.|++||++.+++.++.. ....|+.|.+... ...++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence 58999999999987643 3346677753322 346688999999998753
No 42
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.76 E-value=1.2e-17 Score=142.92 Aligned_cols=118 Identities=26% Similarity=0.520 Sum_probs=99.5
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|.|+|++|++|++++..|.+||||++.++ +...++|+++.++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999986 23357999999999999999999998643 4689999999999999999
Q ss_pred eEEEEEECcccCCC-ceeEEEEEccccccccCCCceeeEEEEEEE
Q 008910 344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (549)
Q Consensus 344 lG~~~v~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~ 387 (549)
||++.+++.++..+ ...+.|++|.+. .......|+|++.+.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence 99999999888653 346899999643 223456899988764
No 43
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=2.4e-17 Score=143.98 Aligned_cols=120 Identities=22% Similarity=0.398 Sum_probs=100.2
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC---------CCCEEEEEEE
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY 333 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~v~ 333 (549)
.|+|+|++|++|+.+|..|.+||||++.++ +++++|++++++.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997 6788999999999999999999975432 1247999999
Q ss_pred ECCCCCCCceeEEEEE-ECcccC---CCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910 334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (549)
|++..++|++||++.+ ++..+. .+.....|++|.+ .+...|+|.+++.+.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence 9999889999999986 444443 3466789999953 34578999999999863
No 44
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=7.4e-18 Score=143.34 Aligned_cols=106 Identities=25% Similarity=0.471 Sum_probs=91.0
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~ 336 (549)
..|.|.|+|++|+||+.++ .|.+||||++++.+... .++||++++++.||+|||+|.|.+... ....|.|.|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3589999999999999998 78999999999987543 356899999999999999999998643 2346889999999
Q ss_pred CCC-CCceeEEEEEECcccCCCceeEEEEEc
Q 008910 337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL 366 (549)
Q Consensus 337 ~~~-~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (549)
... ++++||++.+++.++..+...+.||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999877778899975
No 45
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.75 E-value=1.8e-17 Score=142.74 Aligned_cols=103 Identities=25% Similarity=0.467 Sum_probs=86.0
Q ss_pred ccEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 520 (549)
.+.|.|+|++|+||+..+.. |.+||||++++... ..++||++++++.||+|||+|.|.+... ....|.+.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 37899999999999998865 89999999999532 3477999999999999999999998643 346899999999
Q ss_pred CCCCC-ceeEEEEEeccccccc--cccceecC
Q 008910 521 DTFGK-RYLSRYFQNRKTWLHD--GSEALRLF 549 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~--~~~~~~~~ 549 (549)
+.+++ ++||++.|++.++--. +.....||
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~ 125 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWY 125 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccCCCCccccceE
Confidence 98766 6999999999998333 45666665
No 46
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=1e-17 Score=139.69 Aligned_cols=99 Identities=31% Similarity=0.417 Sum_probs=89.6
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|.|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.++..+.|.|+|||++. +++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~ 75 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKS 75 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCc
Confidence 78999999999999888999999999998 588999999999999999999999998777799999999986 789
Q ss_pred eEEEEEECcccCCC--ceeEEEEEccc
Q 008910 344 IGCAQVRLCELEPG--KVKDVWLKLVK 368 (549)
Q Consensus 344 lG~~~v~l~~l~~~--~~~~~w~~L~~ 368 (549)
||++.++|.++... ...+.|++|..
T Consensus 76 iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 76 LGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred cEEEEEEHHHhhccccceeeeeEecCC
Confidence 99999999998654 36789999953
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=1.4e-17 Score=143.84 Aligned_cols=110 Identities=25% Similarity=0.421 Sum_probs=97.0
Q ss_pred cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYD 334 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d 334 (549)
....+.|.|+|++|++|+..+..+.+||||++++.+...+..+|++++++.||.|||+|.|.+.. .....|.++|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 34678999999999999999988999999999997655677899999999999999999997532 234579999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
++..+++++||++.++++++..+...+.|+.|.
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999889999999999999998888889999985
No 48
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2.5e-17 Score=143.47 Aligned_cols=115 Identities=24% Similarity=0.458 Sum_probs=100.1
Q ss_pred eeEEEEEEEEcccccccCCC----------CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEE
Q 008910 261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i 330 (549)
.|.|+|+|++|++|...+.. +.+||||++.++ +.+..+|+++.++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988762 579999999997 234578999999999999999999996 3468999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCC--CceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~v~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
.|||++..+++++||++.++|.++.. +...+.|++|. ..|+|++.+.|.
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~ 129 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK 129 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence 99999988889999999999999876 56789999984 359999999986
No 49
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.75 E-value=1e-17 Score=143.82 Aligned_cols=110 Identities=30% Similarity=0.404 Sum_probs=97.1
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEE-Eec--CCCCEEEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY 333 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v~ 333 (549)
+....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 33566899999999999999998899999999998877677889998887 999999999998 542 24568999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
|++.++++++||++.++|+++..+.....|++|+
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999999999999999999998888899999985
No 50
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.75 E-value=2.2e-17 Score=141.26 Aligned_cols=93 Identities=31% Similarity=0.431 Sum_probs=81.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEE-e--cCCCCeEEEEEEECC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDHD 521 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~l~i~V~d~~ 521 (549)
+.|.|.|++|+||+..+ .+.+||||++++.. ...++||++++++.||.|||+|.|.+ . +.....|.|+|||++
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 77999999999999999 88999999999963 23578999999999999999999987 2 335568999999999
Q ss_pred CCCC-ceeEEEEEeccccccc
Q 008910 522 TFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~ 541 (549)
.+++ ++||++.+++.++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 8876 6999999999998644
No 51
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.75 E-value=2.8e-17 Score=141.11 Aligned_cols=118 Identities=26% Similarity=0.533 Sum_probs=98.2
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC--C
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S 341 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~--d 341 (549)
|+|+|++|++|+.++..+.+||||++++. +.+.++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+. |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999985 3667899999999999999999999964 6799999999998765 5
Q ss_pred ceeEEEEEECcccCCCc-eeEEEEEccccccccCCCceeeEEEEEE
Q 008910 342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~l~l~l 386 (549)
++||++.+++.++.... ....|++|.+... .......|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence 89999999999986544 3477999854321 23456689888865
No 52
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=3.4e-17 Score=141.65 Aligned_cols=116 Identities=31% Similarity=0.468 Sum_probs=100.7
Q ss_pred EEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCCCceeE
Q 008910 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG 345 (549)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~lG 345 (549)
|++|++|+. ..|.+||||++++. +..++|++++++.||+|||+|.|.+... ..+.|.|+|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 678999998 67899999999997 5678999999999999999999999764 4678999999999988999999
Q ss_pred EEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecc
Q 008910 346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (549)
Q Consensus 346 ~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (549)
++.++++++..+.....|++|.... .....|+|++++.|.|..
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCC
Confidence 9999999999888889999996421 233579999999999753
No 53
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=3.1e-17 Score=141.84 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=100.2
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 342 (549)
.|+|+|++|++|+..+..+.+||||++.....+.+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 57899999999999998899999999987633345689999999999999999999998765678999999999888899
Q ss_pred eeEEEEEECcccCC---CceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 343 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 343 ~lG~~~v~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
+||++.+++.++.. +...+.|+.|. ..|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence 99999999987632 44678999984 258999998885
No 54
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=3.3e-17 Score=143.12 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=82.4
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEE-ECCC
Q 008910 448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT 522 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~-d~~~ 522 (549)
+.|.|+|++|+||+..+ ..|.+||||++++... ..++||+++++|+||+|||+|.|.+. ..+..|.|+|| |++.
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR 107 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence 67999999999999864 5678999999999532 24789999999999999999999998 56778999999 5666
Q ss_pred CCC-ceeEEEEEeccccccccccceecC
Q 008910 523 FGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+++ ++||++.|+++++ +.+.....||
T Consensus 108 ~~~~~~iG~~~i~L~~l-~~~~~~~~Wy 134 (146)
T cd04028 108 MDKKVFMGVAQILLDDL-DLSNLVIGWY 134 (146)
T ss_pred CCCCceEEEEEEEcccc-cCCCCceeEE
Confidence 655 6999999999997 3333445554
No 55
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.5e-17 Score=138.73 Aligned_cols=94 Identities=15% Similarity=0.294 Sum_probs=82.3
Q ss_pred eEEEEEEEEcccccccCCC----CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC-CCEEEEEEEECC
Q 008910 262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE 336 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 336 (549)
|+|.|+|++|++|+..+.. +.+||||+++++ ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999986 67889999999999999999999987543 347999999999
Q ss_pred CCCCCceeEEEEEECcccCCCc
Q 008910 337 GIQSSELIGCAQVRLCELEPGK 358 (549)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~ 358 (549)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999986543
No 56
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=3.8e-17 Score=140.58 Aligned_cols=101 Identities=28% Similarity=0.476 Sum_probs=83.7
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910 448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~ 521 (549)
+.|.|+|++|+||+..+.. |.+||||++++... ..++||++++++.||+|||+|.|.+.. .....|.++|||++
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence 6799999999999999875 88999999999532 346799999999999999999999863 24468999999999
Q ss_pred CCCC-ceeEEEEEeccccccccccceecC
Q 008910 522 TFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
..++ ++||++.+++.++-.. .....||
T Consensus 95 ~~~~~~~iG~~~i~L~~~~~~-~~~~~W~ 122 (125)
T cd08393 95 SLGRNSFLGEVEVDLGSWDWS-NTQPTWY 122 (125)
T ss_pred CCCCCcEeEEEEEecCccccC-CCCcceE
Confidence 8876 6999999999998433 3334454
No 57
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=2.7e-17 Score=142.46 Aligned_cols=108 Identities=26% Similarity=0.448 Sum_probs=95.2
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 334 (549)
...+.|.|+|++|+||+..+..+.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.+.|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 4568999999999999999988999999999997543 4578999999999999999999998543 44689999999
Q ss_pred CCCC--CCCceeEEEEEECcccCCCceeEEEEEc
Q 008910 335 DEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366 (549)
Q Consensus 335 ~~~~--~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (549)
++.. +++++||++.+++.++..+.....|++|
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 9875 6899999999999999887888999987
No 58
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.73 E-value=4.3e-17 Score=140.27 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=97.3
Q ss_pred cCceeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 334 (549)
.+..+.|.|+|++|++|+.++ ..+.+||||++++.+...+.++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 356789999999999999998 678999999999976656678999999999999999999998653 23579999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
++..+++++||++.++|.++........|++|.
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999888999999999999998888889999984
No 59
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=6e-17 Score=139.91 Aligned_cols=115 Identities=32% Similarity=0.642 Sum_probs=96.9
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC----
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI---- 338 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---- 338 (549)
.|+|+|++|++|+..|..|.+||||+++++ ...++|+++.++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999986 5678999999999999999999988654 46899999999852
Q ss_pred -------CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEE
Q 008910 339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (549)
Q Consensus 339 -------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l 386 (549)
+.+++||++.+++.++.. ..+.|+.|.+.. ......|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence 468999999999998753 357999997542 2446789998864
No 60
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=2.8e-17 Score=141.52 Aligned_cols=108 Identities=20% Similarity=0.458 Sum_probs=94.2
Q ss_pred CceeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 333 (549)
...|.|.|+|++|+||+..+ ..+.+||||++++.+... .+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45689999999999999988 678999999999975433 468999999999999999999998643 3558999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (549)
|++..+++++||++.+++.++..+...+.|++|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999988999999999999999777778899986
No 61
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.72 E-value=6.9e-17 Score=137.80 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=87.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEE
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD 519 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d 519 (549)
..+.|.|+|++|+||+..+..|.+||||++++-.. ..++||++++++.||+|||+|.|.+... .+..|.++|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 34789999999999999888889999999998422 2478999999999999999999998632 55689999999
Q ss_pred CCCCCC-ceeEEEEEeccccccccccceecC
Q 008910 520 HDTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
.+..++ ++||.+.|++.++-..+.....||
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy 122 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFESSEEMSTKWY 122 (124)
T ss_pred CCCCCceeEEEEEEEEhhhccCCCccccccc
Confidence 998776 699999999999955544566665
No 62
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=4e-17 Score=140.97 Aligned_cols=108 Identities=24% Similarity=0.437 Sum_probs=91.1
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY 333 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~ 333 (549)
...|.|.|+|++|++|...+..+.+||||++++.+.. ..+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 4568999999999999999988999999999997432 3578899999999999999999986432 4568999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
|++..+++++||++.++|++.. ......|++|+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 9999889999999999999832 23346899873
No 63
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.72 E-value=4e-17 Score=141.61 Aligned_cols=91 Identities=27% Similarity=0.350 Sum_probs=77.5
Q ss_pred ccEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEE
Q 008910 447 RGVLSVTVILAENLPASDL--MGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD 519 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~--~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d 519 (549)
.+.|.|.|++|+||+..+. .+.+||||++++.. +..++||+++++++||+|||.|.|.++.. .+..|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 4789999999999999873 34589999999854 23467999999999999999999998743 45689999999
Q ss_pred CCCCCC-ceeEEEEEeccc
Q 008910 520 HDTFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 520 ~~~~~~-d~lG~~~i~l~~ 537 (549)
++.+++ |+||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 999886 699999999964
No 64
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=142.95 Aligned_cols=95 Identities=37% Similarity=0.600 Sum_probs=87.1
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~ 525 (549)
..|.|.|.|.+|.||...|..+++||||.+.+++ ++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 4599999999999999999889999999999998 888999999999999999999999985 4679999999999986
Q ss_pred -ceeEEEEEeccccccccc
Q 008910 526 -RYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 526 -d~lG~~~i~l~~l~~~~~ 543 (549)
|+||.++|++..+++.+.
T Consensus 81 dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred ccccceeeeccHHHHHHhh
Confidence 799999999999977554
No 65
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.72 E-value=9.2e-17 Score=138.04 Aligned_cols=95 Identities=25% Similarity=0.470 Sum_probs=80.6
Q ss_pred ccEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910 447 RGVLSVTVILAENLPASDL-MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~-~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 520 (549)
.+.|.|+|++|+||+..+. .|.+||||++++... ..++||++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4789999999999998765 478999999998531 3467999999999999999999998642 455899999999
Q ss_pred CCCCC-ceeEEEEEeccccccc
Q 008910 521 DTFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~ 541 (549)
+..++ ++||++.+++.++-.+
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred CCCCCCcEEEEEEEeCCccccc
Confidence 98876 6999999999998554
No 66
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=8.1e-17 Score=138.71 Aligned_cols=102 Identities=23% Similarity=0.327 Sum_probs=86.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF 523 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~ 523 (549)
.+.|.|+|++|+||+..+..|.+||||++++.. ....++|++++++.||.|||+|.|.+... ....|.|+|||++.+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 478999999999999999889999999999952 24578999999999999999999998643 346899999999988
Q ss_pred CC-ceeEEEEEeccccccccccceecC
Q 008910 524 GK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
++ ++||++.++++++...+ ....||
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~-~~~~W~ 120 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSE-KLDLWR 120 (124)
T ss_pred CCCceeEEEEEecccccCCC-CcceEE
Confidence 75 69999999999997655 444454
No 67
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=3.8e-17 Score=137.44 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=89.3
Q ss_pred EEEEEEEcccccccCC-CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCee-ccEEEEEEecC--CCCEEEEEEEECCCCC
Q 008910 264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ 339 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~v~d~~~~~ 339 (549)
|.|+|++|++|+.++. .|.+||||+++++ .++++|++++++.||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5799999999999884 6889999999997 47899999999999999 99999998754 3468999999999988
Q ss_pred CCceeEEEEEECcccCC---CceeEEEEEcc
Q 008910 340 SSELIGCAQVRLCELEP---GKVKDVWLKLV 367 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l~~---~~~~~~w~~L~ 367 (549)
++++||++.+++.++.. +...+.||+|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999866 44578899985
No 68
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.72 E-value=5.9e-17 Score=142.84 Aligned_cols=103 Identities=39% Similarity=0.712 Sum_probs=90.4
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--------------------------CCeEEeeeeCCCCCCee
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW 312 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~kT~~~~~t~nP~w 312 (549)
++.+.|.|+|++|++|.++|..|.+||||++.+.+.. .+.++|+++.+++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 5789999999999999999999999999999986421 13478999999999999
Q ss_pred ccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910 313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (549)
Q Consensus 313 ~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (549)
||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. ...+.|+.|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999998766779999999997 7899999999999984 456899876
No 69
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.71 E-value=8.5e-17 Score=136.34 Aligned_cols=98 Identities=21% Similarity=0.382 Sum_probs=82.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccC-CCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK- 525 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~- 525 (549)
|.|.|+|++|++++..+ .|++||||++.+++ .+.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD 77 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence 78999999999988777 78999999999987 6779999875 79999999999999754 3579999999999886
Q ss_pred ceeEEEEEeccccccccccceecC
Q 008910 526 RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 526 d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
++||.+.+++.+.+..+...-.||
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~ 101 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWY 101 (121)
T ss_pred ceEEEEEEECchhccCCCCccccE
Confidence 699999999975445554444443
No 70
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.71 E-value=1e-16 Score=139.27 Aligned_cols=91 Identities=26% Similarity=0.267 Sum_probs=78.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+..|.+||||++++.. ...++||+++++++||+|||+|.|.+... .+..|.|+|||++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 367999999999999999889999999999943 22367899999999999999999998642 4568999999999
Q ss_pred CCCC-ceeEEEEEeccc
Q 008910 522 TFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~ 537 (549)
..++ ++||++.|+...
T Consensus 94 ~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 EDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCeeEEEEECCCC
Confidence 8776 699999997764
No 71
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=1.1e-16 Score=136.21 Aligned_cols=100 Identities=24% Similarity=0.423 Sum_probs=84.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF 523 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~ 523 (549)
+.|.|+|++|+||+..+ .|.+||||++++... ..++||+++.++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 78999999999999988 788999999999642 3467999999999999999999998642 234789999999876
Q ss_pred C--CceeEEEEEeccccccccccceecC
Q 008910 524 G--KRYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 524 ~--~d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
. +++||++.|++.++. .+.....||
T Consensus 91 ~~~~~~lG~~~i~l~~~~-~~~~~~~Wy 117 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIV-NQKEISGWY 117 (119)
T ss_pred cCCCEEEEEEEecHHHhc-cCccccceE
Confidence 4 369999999999997 455567776
No 72
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.71 E-value=1.1e-16 Score=137.93 Aligned_cols=104 Identities=39% Similarity=0.644 Sum_probs=93.0
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 337 (549)
|.|.|+|++|++|++.+..+.+||||++++. .+.++|+++. ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999999888999999999986 5667888876 489999999999999876 35689999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
.++|++||++.+++.++..+...+.|+.|.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8889999999999999988778899999865
No 73
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=2.1e-16 Score=134.28 Aligned_cols=113 Identities=35% Similarity=0.559 Sum_probs=97.7
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|+|+|++|++|+..+..+.+||||++.+. +.+.++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999986 2456899999999999999999999987666799999999998888999
Q ss_pred eEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEE
Q 008910 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVH 383 (549)
Q Consensus 344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~ 383 (549)
||++.+++.++..+...+.|++|.+ +++...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-----~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-----QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-----CCCccCceEE
Confidence 9999999999988888899999963 2344556654
No 74
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.70 E-value=1e-16 Score=136.76 Aligned_cols=91 Identities=27% Similarity=0.383 Sum_probs=81.0
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC--
Q 008910 449 VLSVTVILAEN---LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-- 523 (549)
Q Consensus 449 ~L~v~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~-- 523 (549)
.|+|+|++|++ |+.++..|.+||||.+++++ ++.||++++++.||+|||+|.|.+.++. ..|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCccc
Confidence 38999999999 88889999999999999987 7889999999999999999999998644 5899999999886
Q ss_pred -----CCceeEEEEEecccccccc
Q 008910 524 -----GKRYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 524 -----~~d~lG~~~i~l~~l~~~~ 542 (549)
++++||++.+++.++....
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~ 101 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDR 101 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCC
Confidence 4579999999999986543
No 75
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=9.6e-17 Score=144.03 Aligned_cols=110 Identities=21% Similarity=0.373 Sum_probs=94.9
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 333 (549)
.+.|.|.|+|++|+||+..+..+.+||||++++.+. +..+++|++++++.||.|||+|.|.+.. .....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 467999999999999999998899999999998743 2457899999999999999999998532 23457999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
|++.++++++||++.+++.++......+.|+.+..
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99999889999999999999877667788988743
No 76
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=8.8e-17 Score=138.72 Aligned_cols=115 Identities=27% Similarity=0.488 Sum_probs=97.3
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 337 (549)
.|+|+|++|++|+..+..+.+||||+++++. .+.++|+++. ++.||.|||.|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 4789999999999998889999999999972 3678888874 6899999999999997663 5789999999998
Q ss_pred CCCCceeEEEEEECcccCCCce-----eEEEEEccccccccCCCceeeEEEE
Q 008910 338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL 384 (549)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~l~l 384 (549)
.+.|++||++.+++.++..+.. ...|+.|.+. .++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence 8889999999999999875543 4789999742 4678898874
No 77
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=4.2e-16 Score=137.12 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=98.5
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEe-e-CCCCeEEeeeeCCCCCCeeccEEEEEEecCC--------CCEEEEE
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDES--------TQHLVVR 331 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~--------~~~L~i~ 331 (549)
|.|.|....+.+|+..+..+.+||||++++. + ...++.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4455554444447788877899999999973 2 4456899999999999999999999996432 4579999
Q ss_pred EEECCCC-CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 332 IYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 332 v~d~~~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
|||++.+ .+|++||++.++|..+........|++|.. ......|+|++++...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence 9999986 579999999999999987767778999863 2446789999999875
No 78
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=2.6e-16 Score=135.79 Aligned_cols=95 Identities=27% Similarity=0.374 Sum_probs=79.6
Q ss_pred ccEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEE-Ee--cCCCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~-v~--~~~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+.. |.+||||++++.. +.++.||++++++.||.|||+|.|. +. +.....|.++|||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 47899999999999998875 8899999999853 2456799999999999999999994 43 223457999999999
Q ss_pred CCCC-ceeEEEEEeccccccc
Q 008910 522 TFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~ 541 (549)
.+++ ++||++.+++.++--.
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CCCCCceeEEEEEeccccCCC
Confidence 8876 6999999999998544
No 79
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=3.1e-17 Score=142.41 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=92.9
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 332 (549)
+.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+ ++||+++++++||+|||+|.|.+.. .....|.|.|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44567899999999999999998899999999999865443 5689999999999999999999864 3456899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
||+|..+++++||++.++.. ..+...++|..+..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHH
Confidence 99999999999999999765 34566678877754
No 80
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.7e-16 Score=133.38 Aligned_cols=100 Identities=22% Similarity=0.372 Sum_probs=84.9
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 341 (549)
|.|.|+|++|++|+.++ ..||||++.++ +++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CC
Confidence 68999999999997654 45899999997 67788988877 59999999999997754 4599999999965 89
Q ss_pred ceeEEEEEECcccCCCcee--EEEEEccccc
Q 008910 342 ELIGCAQVRLCELEPGKVK--DVWLKLVKDL 370 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~ 370 (549)
++||++.++|.++..+... ..|++|.+..
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 9999999999998755444 8999998644
No 81
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=1.8e-16 Score=132.31 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=81.3
Q ss_pred cEEEEEEEEeecCCCCCCC----CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCC
Q 008910 448 GVLSVTVILAENLPASDLM----GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT 522 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~----g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~ 522 (549)
|+|.|+|++|++|+..+.. +.+||||++++++ +++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence 6899999999999987632 3589999999975 678999999999999999999998754 33479999999998
Q ss_pred CCC-ceeEEEEEecccccccccc
Q 008910 523 FGK-RYLSRYFQNRKTWLHDGSE 544 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~ 544 (549)
.++ ++||++.+++++++....+
T Consensus 79 ~~~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 79 FSFNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCCCcceEEEEEEHHHHHhhCCC
Confidence 876 6999999999999776543
No 82
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.69 E-value=1e-16 Score=138.47 Aligned_cols=98 Identities=23% Similarity=0.409 Sum_probs=83.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEec-----CCCCeEEEEEEECCCCC
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFG 524 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~l~i~V~d~~~~~ 524 (549)
++|+|++|+||+..+..|.+||||++++++ .++||++++++.||+|||.|.|.+.+ +....|.++|||++.++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 479999999999999889999999999986 67899999999999999999999976 35668999999999887
Q ss_pred C-ceeEEEEEecccccc-ccccceecC
Q 008910 525 K-RYLSRYFQNRKTWLH-DGSEALRLF 549 (549)
Q Consensus 525 ~-d~lG~~~i~l~~l~~-~~~~~~~~~ 549 (549)
+ ++||++.++++++.. .+....+||
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~ 105 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWF 105 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEE
Confidence 5 699999999999873 333444443
No 83
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.69 E-value=1.9e-16 Score=135.20 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=77.1
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCC-CCccccEEEEEEecCC-CCeEEEEEEEC
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCL-NPIWNQTFDFVVEDGL-HDMLIAEVWDH 520 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~-~~~l~i~V~d~ 520 (549)
..+.|+|.|++|+||++....+.+||||++++- ++..++||+++++|. ||+|||+|.|.+.... +..+.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 348899999999999987656677999999983 334588999999995 6999999999997542 23788999999
Q ss_pred CCCCC-ceeEEEEEecccc
Q 008910 521 DTFGK-RYLSRYFQNRKTW 538 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l 538 (549)
+..++ ++||++.++.+..
T Consensus 92 ~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCcCCceEEEEEECCccC
Confidence 98766 7999999999763
No 84
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.69 E-value=3.3e-16 Score=134.92 Aligned_cols=102 Identities=30% Similarity=0.422 Sum_probs=85.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF 523 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~ 523 (549)
.+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||.|.|.+... ....|.|+|||++.+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 478999999999999999888999999999853 23577999999999999999999998642 345899999999988
Q ss_pred CC-ceeEEEEEeccccccccccceecC
Q 008910 524 GK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
++ ++||++.++++++.. +.....||
T Consensus 95 ~~~~~lG~~~i~l~~~~~-~~~~~~W~ 120 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDL-GHVTEEWR 120 (124)
T ss_pred CCCceeEEEEEecCcccC-CCCcceEE
Confidence 76 699999999999844 55555554
No 85
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.69 E-value=1.8e-16 Score=138.40 Aligned_cols=106 Identities=22% Similarity=0.373 Sum_probs=92.9
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEee-CCCCeEEeeeeCCCCCCeeccEEEEEEecC---------------CCCE
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH 327 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---------------~~~~ 327 (549)
|+|+|++|++|+.+ ..+.+||||++++.. ...+.++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 778999999999973 225678999999999999999999998765 4568
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccc
Q 008910 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (549)
Q Consensus 328 L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~ 370 (549)
|.|+|||++..+++++||++.+++.++........|+.|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998888999999999999988777789999997654
No 86
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=7.4e-17 Score=139.94 Aligned_cols=110 Identities=21% Similarity=0.380 Sum_probs=92.1
Q ss_pred ccCceeEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVV 330 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i 330 (549)
|.+..|.|.|+|++|+||..+|. .+.+||||++++.+++. .++||++++++.||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 44667999999999999999883 35589999999986543 367899999999999999999998643 3567999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
+|||+|.++++++||++.+++.. .|...++|..+..
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999999999999999999974 5666778877653
No 87
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.69 E-value=1.1e-15 Score=132.56 Aligned_cols=118 Identities=19% Similarity=0.371 Sum_probs=96.3
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----------CCeEEeeeeCCCCCCee-ccEEEEEEecCCCCEEEEE
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~~~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 331 (549)
+..|++++|++|+ ++..|++||||++++.+.+ .+.++|+++++++||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 3578999999998 7778999999999997543 34799999999999999 999999985 35689999
Q ss_pred EEECCCCCC---CceeEEEEEECcccCCC---ceeEEEEEccccccccCCCceeeEEEEEE
Q 008910 332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (549)
Q Consensus 332 v~d~~~~~~---d~~lG~~~v~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~G~l~l~l 386 (549)
|||++..++ +++||++.+++.++..+ .....|+.|.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence 999875433 79999999999998654 3367899987653 2556789998865
No 88
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=2.4e-16 Score=134.63 Aligned_cols=93 Identities=26% Similarity=0.423 Sum_probs=82.3
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec-CCCCEEEEEEEECCC
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDEG 337 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~-~~~~~L~i~v~d~~~ 337 (549)
+..|.|+|+|++|++|+ .+..+.+||||+++++ +++++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 57899999999999998 4667889999999987 558999999999999999999997543 356799999999999
Q ss_pred CCCCceeEEEEEECcccC
Q 008910 338 IQSSELIGCAQVRLCELE 355 (549)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~ 355 (549)
.++|++||++.+++....
T Consensus 101 ~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeeEEEEEEecCCc
Confidence 989999999999998654
No 89
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.68 E-value=2.4e-16 Score=131.36 Aligned_cols=90 Identities=31% Similarity=0.431 Sum_probs=82.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCcee
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYL 528 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~l 528 (549)
.|.|+|++|++|+..+..+.+||||++++++ ++++|+++.++.||+|||.|.|.+.++..+.|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence 3789999999999998889999999999987 78899999999999999999999998777789999999887 6799
Q ss_pred EEEEEecccccccc
Q 008910 529 SRYFQNRKTWLHDG 542 (549)
Q Consensus 529 G~~~i~l~~l~~~~ 542 (549)
|++.+++.++....
T Consensus 77 G~~~i~l~~l~~~~ 90 (105)
T cd04050 77 GSLTLPLSELLKEP 90 (105)
T ss_pred EEEEEEHHHhhccc
Confidence 99999999998764
No 90
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=6e-16 Score=138.89 Aligned_cols=97 Identities=31% Similarity=0.392 Sum_probs=82.5
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEE
Q 008910 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVW 518 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~ 518 (549)
...|.|.|+|++|+||+..+..|.+||||++++.. +..++||++++++.||.|||.|.|.+.. ..+..|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 35689999999999999999889999999999842 2357899999999999999999998532 23457999999
Q ss_pred ECCCCCC-ceeEEEEEeccccccc
Q 008910 519 DHDTFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 519 d~~~~~~-d~lG~~~i~l~~l~~~ 541 (549)
|++.+++ ++||++.+++.++...
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccC
Confidence 9998875 7999999999998544
No 91
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=2.8e-16 Score=132.84 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=79.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEe-----CCceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEEEC
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMK-----KSETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH 520 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~d~ 520 (549)
.|+|+|++|+||+..+ .|.+||||++++- .+.++++|+++.+|+||+|||+|+|.+.+ +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 4899999999983 22346789999999999999999999974 2335799999999
Q ss_pred CCCCC-ceeEEEEEeccccccccc
Q 008910 521 DTFGK-RYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~ 543 (549)
+..++ ++||++.+++.++...+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~ 103 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGS 103 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCc
Confidence 87765 699999999999976664
No 92
>PLN03008 Phospholipase D delta
Probab=99.68 E-value=3.8e-16 Score=166.47 Aligned_cols=128 Identities=23% Similarity=0.522 Sum_probs=109.7
Q ss_pred eeEEEEEEEEcccccccCC------------------------------------------CCCCCcEEEEEEeeCCCCe
Q 008910 261 VGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEKT 298 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~ 298 (549)
.|.|.++|.+|++|+++|. .+++||||++.++ +.++
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~rv 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QATL 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccce
Confidence 5899999999999886332 2467999999996 2446
Q ss_pred EEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCce
Q 008910 299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 378 (549)
Q Consensus 299 ~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~ 378 (549)
.||++++++.||+|||+|.|.+.++. ..|.|.|||+|.++ +++||++.+|++++..+...+.|++|.+... +..+.
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k~ 166 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPKA 166 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCCC
Confidence 79999999999999999999998864 48999999999986 5899999999999999999999999987653 34566
Q ss_pred eeEEEEEEEEeecccC
Q 008910 379 RGQVHLELLYCPFGME 394 (549)
Q Consensus 379 ~G~l~l~l~~~p~~~~ 394 (549)
.|+|++++.|.|++..
T Consensus 167 ~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 167 ETAIFIDMKFTPFDQI 182 (868)
T ss_pred CcEEEEEEEEEEcccc
Confidence 7999999999998765
No 93
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=6.1e-16 Score=133.50 Aligned_cols=94 Identities=31% Similarity=0.483 Sum_probs=80.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC---CCCeEEEEEEEC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDH 520 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~l~i~V~d~ 520 (549)
.+.|.|+|++|+||+..+..+.+||||++++.. ...+++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 478999999999999998888999999999854 23577999999999999999999986432 356899999999
Q ss_pred CCCCC-ceeEEEEEecccccc
Q 008910 521 DTFGK-RYLSRYFQNRKTWLH 540 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~ 540 (549)
+..++ ++||++.+++++...
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~~ 115 (125)
T cd04031 95 DRDGENDFLGEVVIDLADALL 115 (125)
T ss_pred CCCCCCcEeeEEEEecccccc
Confidence 98776 699999999999433
No 94
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.3e-16 Score=133.53 Aligned_cols=103 Identities=25% Similarity=0.425 Sum_probs=91.2
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 341 (549)
|.|+|+|++|++|++.+..+.+||||++.++ +...++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999986 23568899999999999999999988765 46899999999999899
Q ss_pred ceeEEEEEECcccCCCceeEEEEEccc
Q 008910 342 ELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
++||++.+++.++..+ ..+.||.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 5578888764
No 95
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.67 E-value=3.2e-16 Score=133.81 Aligned_cols=92 Identities=26% Similarity=0.421 Sum_probs=81.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCc
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKR 526 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d 526 (549)
|.|.|+|++|++|+..+..+.+||||++++++ .+++|+++. ++.||+|||.|.|.+..+....|.|+|||++..+++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence 67999999999999999889999999999987 667888875 478999999999999876667899999999887767
Q ss_pred eeEEEEEeccccccc
Q 008910 527 YLSRYFQNRKTWLHD 541 (549)
Q Consensus 527 ~lG~~~i~l~~l~~~ 541 (549)
+||++.+++.+++..
T Consensus 79 ~iG~~~~~l~~~~~~ 93 (118)
T cd08681 79 LIGDTEVDLSPALKE 93 (118)
T ss_pred ceEEEEEecHHHhhc
Confidence 999999999998664
No 96
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=4e-16 Score=136.85 Aligned_cols=92 Identities=29% Similarity=0.595 Sum_probs=84.9
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 340 (549)
.|.|+|+|++|++|+..+. +.+||||+++++ .+.++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 899999999997 6789999999999999999999999877 6689999999999999
Q ss_pred CceeEEEEEECcccCCC
Q 008910 341 SELIGCAQVRLCELEPG 357 (549)
Q Consensus 341 d~~lG~~~v~l~~l~~~ 357 (549)
|++||.+.+++.++...
T Consensus 76 dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCEEEEEEEEHHHhhhh
Confidence 99999999999998654
No 97
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=3.6e-16 Score=137.67 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=86.8
Q ss_pred EEEEEEEEcccccccCCCC--------------CCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC-CCCE
Q 008910 263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH 327 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~ 327 (549)
.|.|+|++|++|+.+|..+ .+||||++.++ +++.+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999997 5678999999999999999999997654 3568
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCce-------eEEEEEccc
Q 008910 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLVK 368 (549)
Q Consensus 328 L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~-------~~~w~~L~~ 368 (549)
|.|+|||+|..++|++||.+.+++.++..... ...|+.+..
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999999998899999999999999865432 246777643
No 98
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=3.4e-16 Score=131.83 Aligned_cols=96 Identities=33% Similarity=0.579 Sum_probs=83.3
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC---CCCeEEEEEEECCC
Q 008910 448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT 522 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~l~i~V~d~~~ 522 (549)
|+|.|+|++|++|+..+.. +.+||||++++.. ....++|+++++|.||+|||.|.|.+... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999853 23568999999999999999999988644 34689999999998
Q ss_pred CCC-ceeEEEEEeccccccccc
Q 008910 523 FGK-RYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~ 543 (549)
.++ ++||++.+++.++.++++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~ 102 (111)
T cd04041 81 FTADDRLGRVEIDLKELIEDRN 102 (111)
T ss_pred CCCCCcceEEEEEHHHHhcCCC
Confidence 875 799999999999986553
No 99
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.8e-17 Score=156.04 Aligned_cols=227 Identities=27% Similarity=0.362 Sum_probs=170.7
Q ss_pred cccccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEE--EEecC-CCCEE
Q 008910 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEF--IVEDE-STQHL 328 (549)
Q Consensus 254 ~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f--~v~~~-~~~~L 328 (549)
..+|......+..++..|++|..++..+..|||++..+++.-. .+.+|++..+++||.|+|+-.+ ...+. ....+
T Consensus 85 ~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~ 164 (362)
T KOG1013|consen 85 ELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVL 164 (362)
T ss_pred hhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhh
Confidence 3445556678899999999999999999999999999986433 3477889999999999986443 33333 23467
Q ss_pred EEEEEECCCCCCCceeEEEEEECcccCCCceeE--EEEEccccc-ccc-CCCceeeEEEEEEEEeecccCCcccCCCCCC
Q 008910 329 VVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDL-DVQ-RDTKYRGQVHLELLYCPFGMENVFTNPFAPN 404 (549)
Q Consensus 329 ~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~--~w~~L~~~~-~~~-~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~ 404 (549)
++.|.|.+.+..++++|+..+++..+.+.+... .|+.-.-.. ... .+...+|++.+++.|-
T Consensus 165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------- 229 (362)
T KOG1013|consen 165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------- 229 (362)
T ss_pred heeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC---------------
Confidence 899999999999999999999998887654422 232211110 001 1225567777777663
Q ss_pred CCcchHHHHhhcccccccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---Cc
Q 008910 405 FSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SE 481 (549)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~ 481 (549)
....-+.|++.+|..|..+|.+|.+||||..++.. ..
T Consensus 230 ----------------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 230 ----------------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKK 269 (362)
T ss_pred ----------------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchh
Confidence 12355889999999999999999999999999853 23
Q ss_pred eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCCC-CceeEEEEEec
Q 008910 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG-KRYLSRYFQNR 535 (549)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~-~d~lG~~~i~l 535 (549)
.++||.+.++|.+|+||+.|.|.+... ....+.|.|||++..+ .|++|-+....
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 478999999999999999999998743 5568999999999864 37888766544
No 100
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=1.4e-16 Score=138.96 Aligned_cols=110 Identities=25% Similarity=0.427 Sum_probs=93.3
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 332 (549)
+....|.|.|+|++|++|+.++..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 334579999999999999999988999999999997532 3468999999999999999999998643 346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
||++..+++++||++.+++.. .+...++|+.+.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988889999999999975 4455678988764
No 101
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.67 E-value=1e-15 Score=132.46 Aligned_cols=102 Identities=30% Similarity=0.402 Sum_probs=84.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+..+.+||||++++... ..++||++++++.||.|||+|.|.+... ....|.|.|||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 3789999999999999998889999999998532 3578999999999999999999998632 3468999999998
Q ss_pred CC--CC-ceeEEEEEeccccccccccceecC
Q 008910 522 TF--GK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 522 ~~--~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
.. ++ ++||++.+++.++... .....||
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~~-~~~~~W~ 124 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDLS-KGFTQWY 124 (127)
T ss_pred cccCCCCceEEEEEEeccccccc-CCccceE
Confidence 75 34 6999999999998544 3444454
No 102
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.67 E-value=5.6e-16 Score=135.00 Aligned_cols=93 Identities=34% Similarity=0.546 Sum_probs=85.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~ 525 (549)
..|.|.|+|++|++|+..+..|.+||||+++++. .+++|++++++.||.|||.|.|.+.++..+.|.|+|||++.+++
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 4599999999999999999889999999999976 67899999999999999999999987777789999999998875
Q ss_pred -ceeEEEEEecccccc
Q 008910 526 -RYLSRYFQNRKTWLH 540 (549)
Q Consensus 526 -d~lG~~~i~l~~l~~ 540 (549)
++||++.+++.++..
T Consensus 91 d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 91 DDFLGRTEIRVADILK 106 (136)
T ss_pred CCeeEEEEEEHHHhcc
Confidence 699999999999986
No 103
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=9.4e-16 Score=131.95 Aligned_cols=102 Identities=25% Similarity=0.489 Sum_probs=84.8
Q ss_pred ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910 447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 520 (549)
.+.|.|+|++|+||+..+ ..+.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 478999999999999988 6788999999998432 2468999999999999999999998643 345899999999
Q ss_pred CCCCC-ceeEEEEEeccccccccccceecC
Q 008910 521 DTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+..++ ++||++.+++.++. .+.....||
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~-~~~~~~~w~ 121 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWD-LDSQQSEWY 121 (123)
T ss_pred CCCcCCceeeEEEEeccccc-ccCCCccEE
Confidence 98876 69999999999994 444556665
No 104
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=7.4e-16 Score=129.87 Aligned_cols=99 Identities=22% Similarity=0.375 Sum_probs=85.9
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 337 (549)
-.|+|+|++|++|. .|.+||||+++++ +++++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 36899999999998 4789999999998 56789999999999999999999986542 4589999999999
Q ss_pred CCCCceeEEEEEECcccCCC---ceeEEEEEcc
Q 008910 338 IQSSELIGCAQVRLCELEPG---KVKDVWLKLV 367 (549)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~---~~~~~w~~L~ 367 (549)
.++|++||++.++++++..+ .....|++|.
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 88899999999999998655 3457899884
No 105
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=1.8e-15 Score=131.85 Aligned_cols=95 Identities=25% Similarity=0.350 Sum_probs=82.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----ceeeecccccCCCCCccccEEEEEEecC----CCCeEEEEE
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEV 517 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~l~i~V 517 (549)
.+.|.|+|++|++|+..+..|.+||||++++... ..++||+++++|.||+|||.|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 3679999999999999988899999999998632 3578999999999999999999998642 345899999
Q ss_pred EECCCCCC-ceeEEEEEeccccccc
Q 008910 518 WDHDTFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 518 ~d~~~~~~-d~lG~~~i~l~~l~~~ 541 (549)
||++..++ ++||++.++++++..-
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99998875 6999999999999743
No 106
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.65 E-value=5.8e-16 Score=133.91 Aligned_cols=99 Identities=25% Similarity=0.425 Sum_probs=84.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC---CCeEEEEEEECCCCC-
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL---HDMLIAEVWDHDTFG- 524 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~l~i~V~d~~~~~- 524 (549)
.|.|+|++|++|+..+..|.+||||++++++ ++++|+++.++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 3889999999999998889999999999986 6789999999999999999999997542 357999999998875
Q ss_pred -CceeEEEEEeccccccccccceecC
Q 008910 525 -KRYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 525 -~d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+++||++.++++++...+.....||
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~ 104 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRY 104 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEe
Confidence 4799999999999985555555554
No 107
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=3.6e-16 Score=136.91 Aligned_cols=108 Identities=23% Similarity=0.377 Sum_probs=91.5
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 334 (549)
...+.|.|+|++|++|+..|..|.+||||++++.+.+. .+++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 45689999999999999999889999999999974332 357899999999999999999998642 34578999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
++..+++++||++.+++.. .+....+|+.+..
T Consensus 92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 9999999999999999987 4556778888753
No 108
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=5.8e-16 Score=132.21 Aligned_cols=112 Identities=10% Similarity=0.211 Sum_probs=90.4
Q ss_pred ccccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCC-CCeeccEEEEEEecCC-CCEEEE
Q 008910 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVV 330 (549)
Q Consensus 255 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~-nP~w~e~f~f~v~~~~-~~~L~i 330 (549)
.+|.+..|.|+|+|++|+||+++...+.+||||++++...+++ ++||+++++|+ ||+|||+|.|.+.... ...|.+
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 3456778999999999999998765667799999999854443 68899999996 6999999999997542 336889
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
+|||++..+++++||++.++.++. .+...++|..+.
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 999999988999999999999763 333457887764
No 109
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1e-15 Score=128.92 Aligned_cols=101 Identities=25% Similarity=0.482 Sum_probs=86.5
Q ss_pred CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCC-C
Q 008910 279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G 357 (549)
Q Consensus 279 ~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~-~ 357 (549)
..|.+||||+++++ +...++|++++++.||.|||.|.|.+.+...+.|.|+|||++.. +|++||++.++|.++.. +
T Consensus 9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999996 22467999999999999999999999877667899999999988 89999999999999854 3
Q ss_pred ceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910 358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 358 ~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
...+.|++|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC--------CCCCEEEEEEEEec
Confidence 45689999952 45799999999987
No 110
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=1.9e-15 Score=129.82 Aligned_cols=100 Identities=27% Similarity=0.310 Sum_probs=82.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe-CCceeeecccccCCCCCccccEEEEE-Eec--CCCCeEEEEEEECCC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDHDT 522 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~-~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~l~i~V~d~~~ 522 (549)
.+.|.|+|++|+||+..+..|.+||||++.+. .+.+++||+++++ .||+|||+|.|. +.. ..+..|.++|||++.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 36799999999999999988889999998873 3346789998877 999999999998 542 245689999999998
Q ss_pred CCC-ceeEEEEEeccccccccccceec
Q 008910 523 FGK-RYLSRYFQNRKTWLHDGSEALRL 548 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~ 548 (549)
+++ ++||++.|+++++.. +.....|
T Consensus 94 ~~~~~~lG~~~i~L~~l~~-~~~~~~w 119 (124)
T cd08389 94 MRKERLIGEKVVPLSQLNL-EGETTVW 119 (124)
T ss_pred cccCceEEEEEEeccccCC-CCCceEE
Confidence 876 699999999999944 3444444
No 111
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=2.1e-15 Score=131.71 Aligned_cols=111 Identities=19% Similarity=0.301 Sum_probs=92.3
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR 331 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~ 331 (549)
+....+.|.|+|++|+||+.++..|.+||||++++.+..+ .++||++++++.||+|||+|.|.+.. .....|.|.
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 4456799999999999999999889999999999986433 25789999999999999999999874 345689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 332 v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
|||++..+++++||++.+++..... ...++|..+..
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 9999999999999999998874322 23467887754
No 112
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=8.2e-16 Score=132.10 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=92.4
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 342 (549)
+|+|+|++|++|++.|..|.+||||+++++.. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 37899999999999999999999999999722 23367888889999999999999987776779999999999988999
Q ss_pred eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
+||++.+++++..- ..+|..... .......|.++....+.|
T Consensus 80 ~iG~~~i~l~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFF---SKHRATCGL----PPTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeeccccc---chHHHhccC----CCcccccCceecCcccCc
Confidence 99999999987543 122222211 122335677766655543
No 113
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=1.8e-15 Score=132.45 Aligned_cols=91 Identities=31% Similarity=0.442 Sum_probs=78.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc---eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+..|.+||||++++.... .++||++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 36799999999999999988999999999985322 367899999999999999999998632 3457899999999
Q ss_pred CCCC-ceeEEEEEeccc
Q 008910 522 TFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~ 537 (549)
.+++ ++||++.+++..
T Consensus 94 ~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCccEEEEEECCcC
Confidence 8876 699999999988
No 114
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.64 E-value=1.6e-15 Score=132.07 Aligned_cols=98 Identities=27% Similarity=0.380 Sum_probs=85.8
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecC----CCCEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 330 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~----~~~~L~i 330 (549)
...+.|.|+|++|++|+..+..+.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 3468899999999999999888999999999997432 3578999999999999999999998653 3458999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCC
Q 008910 331 RIYDDEGIQSSELIGCAQVRLCELEP 356 (549)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~v~l~~l~~ 356 (549)
+|||++..+++++||++.++|+++..
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999889999999999998864
No 115
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.64 E-value=3.6e-16 Score=136.56 Aligned_cols=110 Identities=29% Similarity=0.475 Sum_probs=91.4
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 332 (549)
+....|.|+|+|++|++|++++..|.+||||++++.+.+ ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 345679999999999999999999999999999997433 2467899999999999999999987542 334699999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
||++..+++++||++.+++. ..+...++|+.+..
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred EECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 99999999999999999987 34455678877754
No 116
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.64 E-value=2e-15 Score=128.48 Aligned_cols=92 Identities=30% Similarity=0.550 Sum_probs=82.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY 527 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 527 (549)
+++|+|++|+||+..+..+.+||||++++++ .+++|+++++|.||.|||.|.|.+.++....|.|+|||++..++ ++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence 4789999999999999889999999999976 67899999999999999999999987667899999999998865 69
Q ss_pred eEEEEEecccccccc
Q 008910 528 LSRYFQNRKTWLHDG 542 (549)
Q Consensus 528 lG~~~i~l~~l~~~~ 542 (549)
||++.++++++...+
T Consensus 79 iG~~~~~l~~l~~~~ 93 (116)
T cd08376 79 IGRCEIDLSALPREQ 93 (116)
T ss_pred EEEEEEeHHHCCCCC
Confidence 999999999986543
No 117
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.64 E-value=4.8e-15 Score=129.06 Aligned_cols=125 Identities=18% Similarity=0.328 Sum_probs=100.3
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 338 (549)
+....|.|.|++|++|+.++ +|||.+.++ +....||+++.++.||.|+|+|.|..... ...+.|.||+.+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence 45678999999999998764 799999998 23346999999999999999999976544 45799999876532
Q ss_pred C----CCceeEEEEEECcccCCCceeEEEEEcccccccc-----CCCceeeEEEEEEEEeec
Q 008910 339 Q----SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCPF 391 (549)
Q Consensus 339 ~----~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~l~l~l~~~p~ 391 (549)
. ++++||.+.|++.++..+...+.||+|....... ......+.|++++.|.+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 5789999999999999999999999998654221 012456899999999864
No 118
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=3.5e-16 Score=137.02 Aligned_cols=109 Identities=23% Similarity=0.407 Sum_probs=91.5
Q ss_pred cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY 333 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 333 (549)
.+..|.|.|+|++|++|+..+..|.+||||++++.+.+ ..+++|++++++.||.|||+|.|.+.. .....|.|+||
T Consensus 11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 34569999999999999999988999999999986432 246789999999999999999998753 23458999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
|++..+++++||++.+++.+. +...++|+++..
T Consensus 91 d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 91 DKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred ECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 999998999999999999875 455677877754
No 119
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=3.6e-15 Score=128.64 Aligned_cols=101 Identities=26% Similarity=0.350 Sum_probs=82.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEEECCC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDT 522 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~d~~~ 522 (549)
.+.|.|+|++|+||+..+..+.+||||++++.. ...+.+|++++++.||.|||+|.|.+.. .....|.++|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 368999999999999998888999999999842 2356899999999999999999997532 234579999999998
Q ss_pred CCC-ceeEEEEEeccccccccccceec
Q 008910 523 FGK-RYLSRYFQNRKTWLHDGSEALRL 548 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~ 548 (549)
.++ ++||++.+++.++.. +.....|
T Consensus 95 ~~~~~~iG~~~i~l~~l~~-~~~~~~W 120 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDL-TEEQTFW 120 (125)
T ss_pred CcCCcEeeEEEEecccccC-CCCcceE
Confidence 876 699999999999864 3334444
No 120
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=5.4e-15 Score=127.20 Aligned_cols=118 Identities=24% Similarity=0.418 Sum_probs=93.8
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 341 (549)
-.|.|+|++|+ |...+..+.+||||+++++ +...++|++++++.||.|||+|.|.+. ..+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCC
Confidence 36899999998 5555557889999999997 223789999999999999999999985 356899999999998899
Q ss_pred ceeEEEEEECcccCCCc---e--eEEEEEccccccccCCCceeeEEEEEE
Q 008910 342 ELIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~~---~--~~~w~~L~~~~~~~~~~~~~G~l~l~l 386 (549)
++||++.+++.++.... . ...|+++.+.. ....+..|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence 99999999999986432 2 23588886432 11346789998865
No 121
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=5e-16 Score=135.73 Aligned_cols=110 Identities=24% Similarity=0.397 Sum_probs=93.2
Q ss_pred cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY 333 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 333 (549)
.+..+.|.|+|++|+||+..+ .+.+||||++.+.+... .+++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 345689999999999999988 78899999999986433 36789999999999999999999853 34468999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
|++..+++++||++.++......+...++|..+..
T Consensus 90 ~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 90 QSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred eCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99998999999999999776666777788887754
No 122
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=2.8e-15 Score=131.25 Aligned_cols=110 Identities=30% Similarity=0.449 Sum_probs=91.9
Q ss_pred ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (549)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 332 (549)
+.+..|.|.|+|++|++|+.++..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4456799999999999999999889999999999974322 457899999999999999999998643 234799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
||++..++|++||++.+++... +...++|+++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 9999999999999999999753 445677877754
No 123
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=2.5e-15 Score=131.55 Aligned_cols=92 Identities=28% Similarity=0.443 Sum_probs=78.9
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||.|.|.+.. .....|.|+|||++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 378999999999999988889999999999842 2246789999999999999999999763 23457999999999
Q ss_pred CCCC-ceeEEEEEecccc
Q 008910 522 TFGK-RYLSRYFQNRKTW 538 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l 538 (549)
..++ ++||++.+++.+.
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 8876 6999999999875
No 124
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.63 E-value=2.6e-15 Score=128.32 Aligned_cols=92 Identities=27% Similarity=0.501 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCcee
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYL 528 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~l 528 (549)
|.|+|++|++|+..+..+.+||||++++++ ...+++|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999998888999999999863 2467899999999999999999999976656689999999998855799
Q ss_pred EEEEEeccccccc
Q 008910 529 SRYFQNRKTWLHD 541 (549)
Q Consensus 529 G~~~i~l~~l~~~ 541 (549)
|++.+++.++...
T Consensus 82 G~~~~~l~~l~~g 94 (119)
T cd04036 82 GTVLFDVSKLKLG 94 (119)
T ss_pred EEEEEEHHHCCCC
Confidence 9999999998643
No 125
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.63 E-value=2.7e-15 Score=130.09 Aligned_cols=91 Identities=34% Similarity=0.594 Sum_probs=82.7
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910 448 GVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~ 525 (549)
|.|.|+|++|+||+..+. .+.+||||++.++. .+++|++++++.||.|||.|.|.+.++....|.|+|||++..++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence 689999999999999887 88999999999875 67899999999999999999999987667799999999998765
Q ss_pred -ceeEEEEEecccccc
Q 008910 526 -RYLSRYFQNRKTWLH 540 (549)
Q Consensus 526 -d~lG~~~i~l~~l~~ 540 (549)
++||++.+++.++..
T Consensus 79 ~~~lG~~~i~l~~~~~ 94 (128)
T cd04024 79 KDYLGEFDIALEEVFA 94 (128)
T ss_pred CCcceEEEEEHHHhhc
Confidence 799999999999974
No 126
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.62 E-value=2.1e-15 Score=126.78 Aligned_cols=98 Identities=32% Similarity=0.502 Sum_probs=83.4
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCceeeecccccCCCCCcc-ccEEEEEEecC--CCCeEEEEEEECCCCCC
Q 008910 450 LSVTVILAENLPASDL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK 525 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~--~~~~l~i~V~d~~~~~~ 525 (549)
|.|+|++|+||+.++. .|.+||||++++++ .++||++++++.||.| ||.|.|.+... ....|.|+|||++..++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence 5799999999998874 68899999999986 8889999999999999 99999999754 34689999999998876
Q ss_pred -ceeEEEEEeccccccc--cccceecC
Q 008910 526 -RYLSRYFQNRKTWLHD--GSEALRLF 549 (549)
Q Consensus 526 -d~lG~~~i~l~~l~~~--~~~~~~~~ 549 (549)
++||++.+++.++... +...-.||
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~ 105 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWF 105 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeE
Confidence 6999999999999874 33344443
No 127
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.62 E-value=2.8e-15 Score=132.58 Aligned_cols=90 Identities=29% Similarity=0.286 Sum_probs=80.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccC-CCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R 526 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d 526 (549)
.|.|+|++|+||+..+..|.+||||++++++ ++++|+++.+ +.||+|||.|+|.+.++..+.+.|+|||++..++ +
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence 3789999999999999999999999999987 7788888876 6999999999999987666789999999998754 6
Q ss_pred eeEEEEEecccccc
Q 008910 527 YLSRYFQNRKTWLH 540 (549)
Q Consensus 527 ~lG~~~i~l~~l~~ 540 (549)
+||++.++++++..
T Consensus 79 ~lG~v~i~L~~l~~ 92 (150)
T cd04019 79 PLGRAVIPLNDIER 92 (150)
T ss_pred eEEEEEEEHHHCcc
Confidence 99999999999864
No 128
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.62 E-value=4.5e-15 Score=128.01 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=83.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCce
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRY 527 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 527 (549)
++|+|+|++|++|+..+..|.+||||++.+++ .+++|++++++.||.|||.|.|.+.+. ...|.|+|||++..++++
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCc
Confidence 68999999999999998889999999999886 678999999999999999999988754 568999999999887789
Q ss_pred eEEEEEeccccccccccc
Q 008910 528 LSRYFQNRKTWLHDGSEA 545 (549)
Q Consensus 528 lG~~~i~l~~l~~~~~~~ 545 (549)
||.+.++++++.....+.
T Consensus 80 lG~~~~~l~~~~~~~~~~ 97 (126)
T cd04046 80 LGQATLSADPNDSQTLRT 97 (126)
T ss_pred eEEEEEecccCCCcCceE
Confidence 999999998865444433
No 129
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.62 E-value=3.8e-15 Score=127.45 Aligned_cols=100 Identities=26% Similarity=0.436 Sum_probs=86.7
Q ss_pred EEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC----CC
Q 008910 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ 339 (549)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~ 339 (549)
.++|++|++.+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999998432 125899999999999999999998765556689999999997 78
Q ss_pred CCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 340 SSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
++++||++.+++.++..+.....|+.|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999998877778888883
No 130
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.62 E-value=4.9e-15 Score=129.32 Aligned_cols=91 Identities=23% Similarity=0.449 Sum_probs=76.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+..|.+||||++++... ..+++|+++++|.||.|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 3789999999999999998899999999998432 2467899999999999999999998532 3347999999999
Q ss_pred CCCC-ceeEEEEEeccc
Q 008910 522 TFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~ 537 (549)
..++ ++||++.|+...
T Consensus 93 ~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 93 VKSSNDFIGRIVIGQYS 109 (135)
T ss_pred CCCCCcEEEEEEEcCcc
Confidence 8776 699999877543
No 131
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.62 E-value=3.5e-15 Score=127.51 Aligned_cols=94 Identities=30% Similarity=0.365 Sum_probs=81.3
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEec-CCCCeEEEEEEECCCCC
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG 524 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~l~i~V~d~~~~~ 524 (549)
..|.|.|+|++|++|+. +..+.+||||++++++ +++||++++++.||+|||+|.|.... .....|.|+|||++..+
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 45899999999999984 5678899999999986 58899999999999999999997533 34668999999999986
Q ss_pred C-ceeEEEEEecccccccc
Q 008910 525 K-RYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 525 ~-d~lG~~~i~l~~l~~~~ 542 (549)
+ ++||++.++++....+.
T Consensus 103 ~dd~IG~~~i~l~~~~~~~ 121 (127)
T cd04032 103 DDDLLGTCSVVPEAGVHED 121 (127)
T ss_pred CCCeeEEEEEEecCCceee
Confidence 5 69999999999887653
No 132
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.62 E-value=3.9e-15 Score=125.24 Aligned_cols=88 Identities=24% Similarity=0.323 Sum_probs=76.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCce
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRY 527 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 527 (549)
+.|.|.|++|++|+..+ ..||||++.+++ ++.+|++.++ .||.|||.|.|.+.+.. ..|.|+|||++..++|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~--~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN--VKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC--EEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCc
Confidence 67999999999997644 458999999987 7889998877 59999999999998644 45999999999887789
Q ss_pred eEEEEEecccccccc
Q 008910 528 LSRYFQNRKTWLHDG 542 (549)
Q Consensus 528 lG~~~i~l~~l~~~~ 542 (549)
||++.|+|.++....
T Consensus 75 lG~v~i~L~~v~~~~ 89 (127)
T cd08394 75 VGTVWIPLSTIRQSN 89 (127)
T ss_pred eEEEEEEhHHcccCC
Confidence 999999999997653
No 133
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.62 E-value=3.4e-15 Score=128.34 Aligned_cols=91 Identities=30% Similarity=0.500 Sum_probs=81.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY 527 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 527 (549)
+|+|+|++|++|+..+..+.+||||++++++ .+++|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF 78 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence 4899999999999998888999999999976 67899999999999999999999987666789999999998876 69
Q ss_pred eEEEEEeccccccc
Q 008910 528 LSRYFQNRKTWLHD 541 (549)
Q Consensus 528 lG~~~i~l~~l~~~ 541 (549)
||++.+++.++...
T Consensus 79 iG~~~~~l~~l~~~ 92 (123)
T cd04025 79 LGKVVFSIQTLQQA 92 (123)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999998654
No 134
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=5.6e-15 Score=127.05 Aligned_cols=106 Identities=25% Similarity=0.420 Sum_probs=90.0
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 333 (549)
...+.|+|+|++|++|++.+..+.+||||++.+.+.. ....+|++++++.||.|||+|.|.... .....+.|+||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 4568899999999999999888999999999986432 357899999999999999999986332 23468999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEE
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLK 365 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~ 365 (549)
|++.. .+++||++.++++++..++.++.|+.
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99987 88999999999999998877777654
No 135
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=4e-15 Score=130.47 Aligned_cols=91 Identities=35% Similarity=0.584 Sum_probs=82.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R 526 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d 526 (549)
|.|.|+|++|+||+..+. +.+||||++++++ ++++|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 789999999999998887 8899999999986 788999999999999999999999876 6689999999998876 6
Q ss_pred eeEEEEEecccccccc
Q 008910 527 YLSRYFQNRKTWLHDG 542 (549)
Q Consensus 527 ~lG~~~i~l~~l~~~~ 542 (549)
+||++.+++.+++...
T Consensus 78 ~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 78 SMGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEEHHHhhhhh
Confidence 9999999999987643
No 136
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.61 E-value=4.9e-15 Score=130.64 Aligned_cols=100 Identities=37% Similarity=0.486 Sum_probs=85.0
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc---------------------------eeeecccccCCCCCcc
Q 008910 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---------------------------TRNKTRVVNDCLNPIW 497 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---------------------------~~~kT~~~~~t~nP~w 497 (549)
+..+.|.|+|++|+||+..+..|.+||||++.+.... ..++|+++.+|.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 5679999999999999999999999999999985321 2378999999999999
Q ss_pred ccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceecC
Q 008910 498 NQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 498 ne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
||+|.|.+..+....|.|+|||++ +++||++.++++++... ..-.||
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~--~~d~W~ 151 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC--GLDSWF 151 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC--CCCCeE
Confidence 999999998766678999999998 67999999999999733 244443
No 137
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=5.8e-15 Score=128.84 Aligned_cols=92 Identities=24% Similarity=0.304 Sum_probs=79.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEEC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDH 520 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~ 520 (549)
.+.|.|+|++|+||+..+..|.+||||++++... ..++||++++++.||+|||+|.|.+.. .....|.|+|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 4789999999999999998899999999999531 136799999999999999999999873 3456899999999
Q ss_pred CCCCC-ceeEEEEEecccc
Q 008910 521 DTFGK-RYLSRYFQNRKTW 538 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l 538 (549)
+..++ ++||++.+++...
T Consensus 94 ~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 94 RKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CCCCCCcEEEEEEECCcCC
Confidence 98776 6999999988754
No 138
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.61 E-value=4.2e-15 Score=127.48 Aligned_cols=93 Identities=33% Similarity=0.552 Sum_probs=82.6
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECC
Q 008910 448 GVLSVTVILAENLPASDL------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 521 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~------~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~ 521 (549)
|.|.|+|++|+||+..+. .|.+||||++++++ ..++|++++++.||.|||.|.|.+.+.....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence 679999999999998774 36799999999986 7889999999999999999999998666779999999999
Q ss_pred CCCCceeEEEEEecccccccc
Q 008910 522 TFGKRYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 522 ~~~~d~lG~~~i~l~~l~~~~ 542 (549)
..++++||++.+++.++...+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~ 99 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKG 99 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccC
Confidence 885579999999999997654
No 139
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=6.8e-15 Score=128.82 Aligned_cols=92 Identities=30% Similarity=0.450 Sum_probs=78.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|++|+..+..|.+||||++++.. ...+++|++++++.||.|||.|.|.+... ....|.|+|||++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 478999999999999999889999999999853 12467899999999999999999998643 2347999999999
Q ss_pred CCCC-ceeEEEEEecccc
Q 008910 522 TFGK-RYLSRYFQNRKTW 538 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l 538 (549)
.+++ ++||++.+++...
T Consensus 94 ~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 94 RIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCCceeEEEEECCccC
Confidence 8876 6999999999763
No 140
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=3.6e-15 Score=131.13 Aligned_cols=98 Identities=24% Similarity=0.343 Sum_probs=79.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEe---------------cCCCC
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVE---------------DGLHD 511 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~~ 511 (549)
|.|+|++|+||+. .+|.+||||++++.+. ..+++|+++++|.||+|||.|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8899999999998 5688999999999652 25679999999999999999999995 11234
Q ss_pred eEEEEEEECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910 512 MLIAEVWDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 512 ~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
.|.|.|||++..++ ++||++.|++.++...+.....||
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~ 118 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWY 118 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCccee
Confidence 79999999998765 699999999999876522334443
No 141
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.61 E-value=5.1e-15 Score=128.77 Aligned_cols=106 Identities=33% Similarity=0.543 Sum_probs=92.8
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECCCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI 338 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~~ 338 (549)
|.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 23578999999999999999999998654 346899999999988
Q ss_pred CCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
+++++||++.+++.++... ..+.|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8899999999999998755 6789999964
No 142
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.61 E-value=4.7e-15 Score=129.36 Aligned_cols=92 Identities=30% Similarity=0.446 Sum_probs=79.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 520 (549)
..+.|.|+|++|+||+..+..|.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 34889999999999999998899999999999532 3467999999999999999999998643 345899999999
Q ss_pred CCCCC-ceeEEEEEeccc
Q 008910 521 DTFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~ 537 (549)
+..++ ++||++.+++..
T Consensus 91 d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 91 DIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCccEEEEEEEecCC
Confidence 98765 699999999986
No 143
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.61 E-value=5.5e-15 Score=126.63 Aligned_cols=92 Identities=27% Similarity=0.436 Sum_probs=81.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL 528 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 528 (549)
|.|+|++|++|+..+..|.+||||++++++ ...++|+++.++.||.|||.|.|.+.++ ...|.|+|||++..++ ++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 789999999999999889999999999875 3578999999999999999999998764 4689999999999865 799
Q ss_pred EEEEEeccccccccc
Q 008910 529 SRYFQNRKTWLHDGS 543 (549)
Q Consensus 529 G~~~i~l~~l~~~~~ 543 (549)
|++.+++.++...+.
T Consensus 80 G~~~~~l~~l~~~~~ 94 (121)
T cd04042 80 GSAFVDLSTLELNKP 94 (121)
T ss_pred EEEEEEHHHcCCCCC
Confidence 999999999875443
No 144
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=1.1e-14 Score=125.28 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=82.5
Q ss_pred ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCC
Q 008910 447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT 522 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~ 522 (549)
.+.|.|+|++|+||+..+ ..+.+||||++++.. ....++|++++++.||+|||.|.|.+... ....|.|+|||++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 478999999999999988 678899999999842 23567899999999999999999998643 24579999999998
Q ss_pred CCC-ceeEEEEEecccccccccc
Q 008910 523 FGK-RYLSRYFQNRKTWLHDGSE 544 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~ 544 (549)
.++ ++||++.++++++...+..
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~ 115 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGG 115 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCc
Confidence 775 6999999999999665543
No 145
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=7.3e-15 Score=128.18 Aligned_cols=110 Identities=26% Similarity=0.450 Sum_probs=88.4
Q ss_pred cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (549)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 333 (549)
.+..|.|.|+|++|++|+..|..|.+||||++++.+.. .++++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 10 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~ 89 (135)
T cd08410 10 LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVY 89 (135)
T ss_pred CCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence 35669999999999999999988999999999986432 2457899999999999999999998532 3347999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
|++..+++++||++.+...... +...++|..+..
T Consensus 90 d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~ 123 (135)
T cd08410 90 GHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLN 123 (135)
T ss_pred eCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHh
Confidence 9999899999999887653322 223567877754
No 146
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.61 E-value=3.1e-16 Score=152.27 Aligned_cols=109 Identities=32% Similarity=0.571 Sum_probs=94.7
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~ 336 (549)
....|.|+|.+|+||.++|.+|.|||||++.+-|+++ .+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 3467899999999999999999999999999986543 368899999999999999999998744 3558999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (549)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~ 369 (549)
+.+++||+|..++.+++|... ..+.||.|...
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHhhh
Confidence 999999999999999998764 45789998754
No 147
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.60 E-value=1.4e-14 Score=123.41 Aligned_cols=114 Identities=31% Similarity=0.512 Sum_probs=89.0
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC--CCEEEEEEEECCCCCCC
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS 341 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~d 341 (549)
|.|+|++|++|+.. +.+||||+++++ +.+.++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999997 234578999988 99999999999987542 34688888998866556
Q ss_pred ceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
..+|. +++..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence 66665 5555555577789999997532 234668999999876
No 148
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.5e-14 Score=124.39 Aligned_cols=100 Identities=28% Similarity=0.368 Sum_probs=83.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEEEC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH 520 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~d~ 520 (549)
.+.|.|+|++|++|+..+..+.+||||++++.. ...+++|++++++.||.|||.|.|.... .....+.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 377999999999999988888999999999842 2347899999999999999999996322 2346899999999
Q ss_pred CCCCCceeEEEEEeccccccccccce
Q 008910 521 DTFGKRYLSRYFQNRKTWLHDGSEAL 546 (549)
Q Consensus 521 ~~~~~d~lG~~~i~l~~l~~~~~~~~ 546 (549)
+..++++||++.++++++..++.+.+
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~ 119 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQTKQF 119 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCcceEe
Confidence 88755799999999999987766554
No 149
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.60 E-value=4.8e-15 Score=126.61 Aligned_cols=86 Identities=28% Similarity=0.436 Sum_probs=77.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeE
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLS 529 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG 529 (549)
|.|+|++|+||+.. .+||||++.+++ .+.+|++++++.||+|||+|.|.+.++....|.++|||++..++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceee
Confidence 78999999999887 689999999986 678999999999999999999998876677899999999987668999
Q ss_pred EEEEeccccccc
Q 008910 530 RYFQNRKTWLHD 541 (549)
Q Consensus 530 ~~~i~l~~l~~~ 541 (549)
++.++++++...
T Consensus 76 ~~~i~l~~l~~~ 87 (121)
T cd08378 76 GVCFDLSEVPTR 87 (121)
T ss_pred eEEEEhHhCcCC
Confidence 999999998654
No 150
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=6.5e-15 Score=126.50 Aligned_cols=92 Identities=23% Similarity=0.417 Sum_probs=81.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY 527 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 527 (549)
+|+|+|++|++|+..+..|.+||||++++++.....||.+++++.||+|||+|.|.+..+....|.|+|||++..++ ++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 37899999999999999899999999999874445678888899999999999999876667789999999998865 79
Q ss_pred eEEEEEecccccc
Q 008910 528 LSRYFQNRKTWLH 540 (549)
Q Consensus 528 lG~~~i~l~~l~~ 540 (549)
||++.+++++.+.
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998864
No 151
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.60 E-value=2.3e-14 Score=118.92 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=70.4
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC------
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------ 335 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~------ 335 (549)
|.|+|++|+||. +.+||||++.+.+.+ ....+|+++++|+||+|||+|.|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 679999999996 569999999987543 35799999999999999999999986 367999999998
Q ss_pred -CCCCCCceeEEEEEECc
Q 008910 336 -EGIQSSELIGCAQVRLC 352 (549)
Q Consensus 336 -~~~~~d~~lG~~~v~l~ 352 (549)
|..+.|+++|.+.+.|+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 45678999998888875
No 152
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.60 E-value=7.7e-15 Score=125.97 Aligned_cols=91 Identities=27% Similarity=0.490 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC---c
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---R 526 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~---d 526 (549)
|.|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence 789999999999999889999999999964 467899999999999999999999964 5789999999998763 4
Q ss_pred eeEEEEEeccccccccc
Q 008910 527 YLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 527 ~lG~~~i~l~~l~~~~~ 543 (549)
+||++.+++++++....
T Consensus 79 ~lG~~~i~l~~l~~~~~ 95 (123)
T cd08382 79 FLGCVRIRANAVLPLKD 95 (123)
T ss_pred eEeEEEEEHHHccccCC
Confidence 99999999999976543
No 153
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.59 E-value=7.7e-15 Score=131.21 Aligned_cols=100 Identities=27% Similarity=0.458 Sum_probs=83.8
Q ss_pred cccEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEeCCceeeecccccCCCCC
Q 008910 446 IRGVLSVTVILAENLPASD------------------------------LMGKADPYVVLTMKKSETRNKTRVVNDCLNP 495 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~------------------------------~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP 495 (549)
--|.|.|+|++|++|+.+| ..|.+||||++.+++ .+..||++++++.||
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~nP 83 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSENP 83 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCCC
Confidence 3589999999999999876 346689999999986 345799999999999
Q ss_pred ccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceec
Q 008910 496 IWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRL 548 (549)
Q Consensus 496 ~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~ 548 (549)
+|||+|.|.+.++ ...|.|+|||++..++++||++.++++++.. +.....|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~-g~~~~~w 134 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLS-GEPVEGW 134 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccC-CCCcceE
Confidence 9999999998754 3579999999998888999999999999865 3333344
No 154
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.59 E-value=1.3e-14 Score=126.79 Aligned_cols=90 Identities=24% Similarity=0.283 Sum_probs=76.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+ .+.+||||++++... ..++||++++++.||+|||.|.|.+.. .....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 377999999999999888 778999999998532 246789999999999999999999863 24468999999999
Q ss_pred CCCC-ceeEEEEEeccc
Q 008910 522 TFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~ 537 (549)
..++ ++||++.|+...
T Consensus 93 ~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 93 GVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCCcceEEEEEECCcc
Confidence 8766 699999998643
No 155
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.59 E-value=1.4e-14 Score=126.41 Aligned_cols=91 Identities=32% Similarity=0.430 Sum_probs=77.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|++|+..+..|.+||||++++.. ...+++|++++++.||.|||.|.|.+... ....|.|+|||++
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 478999999999999999899999999999853 23467899989999999999999998632 3346999999999
Q ss_pred CCCC-ceeEEEEEeccc
Q 008910 522 TFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~ 537 (549)
..++ ++||++.+++..
T Consensus 93 ~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 93 RVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCCceeEEEEECCCC
Confidence 9876 699999998873
No 156
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=7.6e-15 Score=129.28 Aligned_cols=92 Identities=25% Similarity=0.381 Sum_probs=79.9
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC-CCCeEE
Q 008910 450 LSVTVILAENLPASDLM--------------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLI 514 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~--------------g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~ 514 (549)
|.|+|++|++|+.++.. +.+||||++.+++ ++.||++++++.||+|||+|.|.+..+ ..+.|.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 78999999999998744 3689999999987 567999999999999999999997644 346899
Q ss_pred EEEEECCCCCC-ceeEEEEEeccccccccc
Q 008910 515 AEVWDHDTFGK-RYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 515 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~ 543 (549)
|+|||++..++ |+||++.+++.++...+.
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 99999998855 799999999999977664
No 157
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=9.7e-15 Score=124.52 Aligned_cols=92 Identities=27% Similarity=0.459 Sum_probs=82.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R 526 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d 526 (549)
|.|.|+|++|++|+..+..+.+||||++++++ ...++|+++.++.||.|||.|.|.+..+ ...|.|+|||++..++ +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 67999999999999998889999999999965 3678999999999999999999998754 4689999999998876 5
Q ss_pred eeEEEEEeccccccc
Q 008910 527 YLSRYFQNRKTWLHD 541 (549)
Q Consensus 527 ~lG~~~i~l~~l~~~ 541 (549)
+||++.+++.+++..
T Consensus 79 ~IG~~~~~l~~l~~~ 93 (120)
T cd04045 79 SLGSVEINVSDLIKK 93 (120)
T ss_pred eeeEEEEeHHHhhCC
Confidence 999999999999876
No 158
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=2e-15 Score=131.96 Aligned_cols=109 Identities=28% Similarity=0.430 Sum_probs=93.5
Q ss_pred CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCC--CCEEEEEEEE
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD 334 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d 334 (549)
+..+.|.|+|++|++|+..+..+.+||||++++.+... ..++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 34689999999999999998888999999999975432 3578999999999999999999986542 5689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (549)
Q Consensus 335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~ 369 (549)
++..+++++||++.+++++ .+...++|+.|...
T Consensus 91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9988889999999999998 56667899988653
No 159
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.59 E-value=5.4e-14 Score=121.85 Aligned_cols=119 Identities=25% Similarity=0.402 Sum_probs=96.0
Q ss_pred EEEEEEEEcccccccC--CCCCCCcEEEEEEeeCC---CCeEEeeeeCCCC-CCeeccEEEEEEecCCCCEEEEEEEECC
Q 008910 263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~-nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 336 (549)
.|+|+|++|++|+..+ ..+.+||||++++...+ ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 4578999987765 9999999999998766668999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
.. ++++||++.++++++..+ ..|+.|.... ......|.|.+.+..
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~---~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG---YRHVPLLDSK---GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc---eEEEEecCCC---CCCCcceeEEEEEEE
Confidence 87 899999999999999665 3577775321 122456888887764
No 160
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=1.8e-14 Score=125.38 Aligned_cols=94 Identities=33% Similarity=0.532 Sum_probs=81.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF 523 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~ 523 (549)
+.|.|+|++|+||+..+..+.+||||++.+.+ ...+++|+++.++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 77999999999999988888999999999963 23678999999999999999999998754 345899999999987
Q ss_pred CC-ceeEEEEEeccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~ 541 (549)
++ ++||++.+++.++...
T Consensus 93 ~~~~~iG~~~~~l~~l~~~ 111 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM 111 (131)
T ss_pred CCcceeEEEEEeHHHhCcC
Confidence 66 6999999999999754
No 161
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=1.1e-14 Score=127.24 Aligned_cols=91 Identities=32% Similarity=0.506 Sum_probs=79.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCC--CCeEEEEEEECC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD 521 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~~ 521 (549)
.+.|.|+|++|+||+..+..+.+||||++++... ..+++|+++.++.||.|||+|.|.+.... ...|.|+|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 3789999999999999888889999999998643 23679999999999999999999987542 568999999999
Q ss_pred CCCC-ceeEEEEEeccc
Q 008910 522 TFGK-RYLSRYFQNRKT 537 (549)
Q Consensus 522 ~~~~-d~lG~~~i~l~~ 537 (549)
..++ ++||++.+++++
T Consensus 93 ~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCceeEEEEECCCC
Confidence 8665 699999999998
No 162
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.58 E-value=1.5e-14 Score=123.87 Aligned_cols=90 Identities=24% Similarity=0.451 Sum_probs=79.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL 528 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 528 (549)
|.|+|++|++|+..+..|.+||||++.+++ ....||++++++.||.|||.|.|.+.+ ....|.|+|||++..++ ++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEE
Confidence 789999999999999999999999999975 345799999999999999999999864 34689999999998876 699
Q ss_pred EEEEEeccccccc
Q 008910 529 SRYFQNRKTWLHD 541 (549)
Q Consensus 529 G~~~i~l~~l~~~ 541 (549)
|++.++++++...
T Consensus 80 G~~~~~~~~~~~~ 92 (121)
T cd04054 80 GKVSLTREVISAH 92 (121)
T ss_pred EEEEEcHHHhccC
Confidence 9999999888654
No 163
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.56 E-value=3.6e-14 Score=121.27 Aligned_cols=91 Identities=36% Similarity=0.581 Sum_probs=80.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R 526 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d 526 (549)
|.|.|+|++|+||+..+..+.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ...+.|+|||++..++ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCc
Confidence 67999999999999999888999999999876 567999999999999999999998753 4689999999998665 7
Q ss_pred eeEEEEEeccccccc
Q 008910 527 YLSRYFQNRKTWLHD 541 (549)
Q Consensus 527 ~lG~~~i~l~~l~~~ 541 (549)
+||++.+++.++...
T Consensus 78 ~iG~~~~~l~~~~~~ 92 (119)
T cd08377 78 FLGKVAIPLLSIKNG 92 (119)
T ss_pred eeeEEEEEHHHCCCC
Confidence 999999999998644
No 164
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.56 E-value=2e-14 Score=124.08 Aligned_cols=90 Identities=23% Similarity=0.405 Sum_probs=78.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL 528 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 528 (549)
|.|+|++|+||+. ..|.+||||+++++....+++|+++.+|.||+|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999988 6789999999999754467899999999999999999999863 45689999999998875 699
Q ss_pred EEEEEecccccccc
Q 008910 529 SRYFQNRKTWLHDG 542 (549)
Q Consensus 529 G~~~i~l~~l~~~~ 542 (549)
|++.++++++....
T Consensus 78 G~~~i~l~~l~~~~ 91 (126)
T cd08678 78 GLAIVPFDELRKNP 91 (126)
T ss_pred EEEEEeHHHhccCC
Confidence 99999999987654
No 165
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.56 E-value=2.4e-14 Score=122.24 Aligned_cols=91 Identities=19% Similarity=0.300 Sum_probs=78.3
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910 450 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY 527 (549)
Q Consensus 450 L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 527 (549)
|.|.|.+|+||+..+ ..|.+||||++++++ ...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++ ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence 678999999999874 457899999999965 3468999999999999999999999753 4689999999998876 69
Q ss_pred eEEEEEecccccccc
Q 008910 528 LSRYFQNRKTWLHDG 542 (549)
Q Consensus 528 lG~~~i~l~~l~~~~ 542 (549)
||++.++++++...+
T Consensus 80 iG~~~i~l~~l~~~~ 94 (121)
T cd08401 80 IGKVAIKKEDLHKYY 94 (121)
T ss_pred EEEEEEEHHHccCCC
Confidence 999999999987543
No 166
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.56 E-value=3.1e-14 Score=122.56 Aligned_cols=94 Identities=32% Similarity=0.585 Sum_probs=81.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccC-CCCCccccEEEEEEecC---CCCeEEEEEEECCCC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTF 523 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~---~~~~l~i~V~d~~~~ 523 (549)
|.|.|+|++|++|+..+..+.+||||++++++ ..++|++..+ +.||.|||.|.|.+..+ ....|.|+|||++.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence 67999999999999988888999999999976 5678888774 89999999999999876 356899999999987
Q ss_pred CC-ceeEEEEEeccccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~ 543 (549)
++ ++||++.+++.+++.++.
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~ 99 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGV 99 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCC
Confidence 65 699999999999987653
No 167
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.56 E-value=6.5e-15 Score=143.21 Aligned_cols=95 Identities=34% Similarity=0.555 Sum_probs=84.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF 523 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~ 523 (549)
..|.|+|..|+||.++|.+|.+||||++.+- +...++||++++.++||+|||+|+|.+... ....|.|+|||+|+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 5799999999999999999999999999983 335688999999999999999999999743 445899999999998
Q ss_pred CC-ceeEEEEEecccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~ 542 (549)
++ ||+|..++++++++..+
T Consensus 260 sRNDFMGslSFgisEl~K~p 279 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAP 279 (683)
T ss_pred ccccccceecccHHHHhhcc
Confidence 87 89999999999997754
No 168
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.55 E-value=5.2e-14 Score=121.59 Aligned_cols=92 Identities=32% Similarity=0.491 Sum_probs=80.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R 526 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d 526 (549)
.|+|+|++|++|+..+..+.+||||++.++.. ...+||++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58899999999999998899999999987643 356899999999999999999999987556789999999998765 6
Q ss_pred eeEEEEEecccccc
Q 008910 527 YLSRYFQNRKTWLH 540 (549)
Q Consensus 527 ~lG~~~i~l~~l~~ 540 (549)
+||++.+++.++..
T Consensus 82 ~iG~~~i~l~~~~~ 95 (126)
T cd04043 82 LCGRASLKLDPKRF 95 (126)
T ss_pred eEEEEEEecCHHHc
Confidence 99999999988643
No 169
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.54 E-value=3.5e-14 Score=119.64 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=78.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC----CCeEEEEEEECCC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDT 522 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~l~i~V~d~~~ 522 (549)
...|.|+|++|++|+ .|.+||||++++++ ++++|++++++.||.|||.|.|.+..+. ...|.|+|||++.
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 367999999999998 46799999999996 6778999999999999999999986442 4589999999998
Q ss_pred CCC-ceeEEEEEecccccccc
Q 008910 523 FGK-RYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~ 542 (549)
+++ ++||++.++++++....
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~ 97 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQP 97 (111)
T ss_pred cccCCccEEEEECCccccCCC
Confidence 876 69999999999997653
No 170
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=7.3e-14 Score=120.33 Aligned_cols=96 Identities=30% Similarity=0.491 Sum_probs=82.5
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-
Q 008910 448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK- 525 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~- 525 (549)
|.|.|+|++|++|+..+ ..+.+||||++++++....++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence 78999999999999655 456789999999975346789999999999999999999988 456789999999998765
Q ss_pred ceeEEEEEecccccccccc
Q 008910 526 RYLSRYFQNRKTWLHDGSE 544 (549)
Q Consensus 526 d~lG~~~i~l~~l~~~~~~ 544 (549)
++||.+.+++.++...+..
T Consensus 81 ~~iG~~~~~l~~l~~~~~~ 99 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQ 99 (124)
T ss_pred ceeEEEEEEHHHhccCccc
Confidence 6999999999999876543
No 171
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=8.2e-14 Score=121.58 Aligned_cols=93 Identities=26% Similarity=0.490 Sum_probs=80.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~ 523 (549)
.|.|+|++|+||+..+..|.+||||++++.+. ..+++|+++++|.||.|||+|.|.+.. ....|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 37899999999999998889999999999753 125789999999999999999999864 346799999999988
Q ss_pred CC-ceeEEEEEecccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~ 542 (549)
++ ++||++.+++.++....
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~ 99 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTET 99 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcC
Confidence 76 69999999999997654
No 172
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.53 E-value=8.1e-14 Score=117.26 Aligned_cols=91 Identities=26% Similarity=0.439 Sum_probs=76.5
Q ss_pred EEEEcccccccCCCCCCCcEEEEEEeeCC---CCeEEeeeeCCCCCCeeccEEEEEEecC----CCCEEEEEEEECCCCC
Q 008910 267 KLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQ 339 (549)
Q Consensus 267 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~w~e~f~f~v~~~----~~~~L~i~v~d~~~~~ 339 (549)
-.++|++|+.+|..|.+||||++++.+.. ...++|+++++++||+|| +|.|.+... ..+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34689999999999999999999987432 235899999999999999 688876433 1568999999999999
Q ss_pred CCceeEEEEEECcccCCCc
Q 008910 340 SSELIGCAQVRLCELEPGK 358 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~ 358 (549)
+|++||++.++++++....
T Consensus 84 ~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 84 KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCcEEEEEEEEHHHHhcCC
Confidence 9999999999999987543
No 173
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.52 E-value=8.8e-14 Score=121.09 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=79.8
Q ss_pred ccEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEE
Q 008910 447 RGVLSVTVILAENLPASDLM----------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAE 516 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~----------g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~ 516 (549)
.|.|.|+|++|++|...+.. |.+||||++.+++ .+..+|+++++|.||.|||+|+|.+. ....|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence 48899999999999987752 5789999999985 34568899899999999999999997 34689999
Q ss_pred EEECCCCCC-ceeEEEEEeccccccc
Q 008910 517 VWDHDTFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 517 V~d~~~~~~-d~lG~~~i~l~~l~~~ 541 (549)
|||++..+. ++||++.++++++...
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~ 105 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQR 105 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhccc
Confidence 999988766 6999999999999874
No 174
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=4.1e-14 Score=164.69 Aligned_cols=120 Identities=14% Similarity=0.304 Sum_probs=103.2
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC-CCEEEEEEEECCCC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEGI 338 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~~~ 338 (549)
-.|.|.|+|++|+||. +..|.+||||++.++. .++.||++++++.||+|||+|.|.+.++. .+.+.++|||+|.+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 4699999999999998 4468999999999982 33678999999999999999999998874 46799999999998
Q ss_pred CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeE---EEEEEEEee
Q 008910 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP 390 (549)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---l~l~l~~~p 390 (549)
+ ++.+|.+.+++.++..++....||+|.+ +++..|. |++++.|.+
T Consensus 2054 ~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 G-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred C-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence 5 5599999999999998999999999953 3345677 999999853
No 175
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=9.8e-14 Score=118.67 Aligned_cols=93 Identities=25% Similarity=0.309 Sum_probs=78.6
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEeCCc-----eeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC----C
Q 008910 453 TVILAENLPASDLMGKADPYVVLTMKKSE-----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----F 523 (549)
Q Consensus 453 ~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~----~ 523 (549)
..++|++|+..+..|.+||||++++.+.. ..++|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 45889999999988999999999997633 35899999999999999999998765455689999999996 5
Q ss_pred CC-ceeEEEEEeccccccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHDGSEA 545 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~ 545 (549)
++ ++||++.+++.+++....+.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~ 107 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQK 107 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcE
Confidence 55 79999999999998665443
No 176
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.52 E-value=1.4e-13 Score=118.78 Aligned_cols=88 Identities=33% Similarity=0.633 Sum_probs=77.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC-----
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF----- 523 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~----- 523 (549)
.|.|+|++|++|+..+..|.+||||++++++ ..++|+++.++.||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence 6899999999999999889999999999975 678999999999999999999998754 46899999999852
Q ss_pred -------CCceeEEEEEeccccc
Q 008910 524 -------GKRYLSRYFQNRKTWL 539 (549)
Q Consensus 524 -------~~d~lG~~~i~l~~l~ 539 (549)
.+++||++.+++.++.
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred ceeccccCCCcceEEEEEhHHcc
Confidence 2469999999998874
No 177
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.51 E-value=1.6e-13 Score=118.25 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=77.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R 526 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d 526 (549)
..|.|+|++|+||+.. +.+||||++.+++ .+..+|++ +++.||.|||.|.|.+..+....++|.|||++..++ +
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 4699999999999874 4689999999975 34567887 468999999999998765544679999999998876 6
Q ss_pred eeEEEEEeccccccccccceecC
Q 008910 527 YLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 527 ~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+||++.+++.++.. +.....||
T Consensus 79 ~iG~v~i~l~~l~~-~~~~~~W~ 100 (126)
T cd08400 79 EIAEVTVQLSKLQN-GQETDEWY 100 (126)
T ss_pred eEEEEEEEHhHccC-CCcccEeE
Confidence 99999999999865 33334443
No 178
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.51 E-value=9.3e-14 Score=121.29 Aligned_cols=91 Identities=23% Similarity=0.368 Sum_probs=78.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--ceeeecccccCCCCCccccEEEEEEecC---------------CCCe
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKS--ETRNKTRVVNDCLNPIWNQTFDFVVEDG---------------LHDM 512 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~ 512 (549)
|.|.|++|++|+.. ..|.+||||+++++.. ..+++|+++.++.||.|||.|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 7889999999999731 3678999999999999999999998764 3458
Q ss_pred EEEEEEECCCCCC-ceeEEEEEeccccccc
Q 008910 513 LIAEVWDHDTFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 513 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~ 541 (549)
|.|+|||++..++ ++||++.+++.++...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~ 109 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA 109 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCC
Confidence 9999999998755 6999999999998754
No 179
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.50 E-value=1.9e-13 Score=119.30 Aligned_cols=84 Identities=27% Similarity=0.514 Sum_probs=73.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC---------CCCeEEEEEEE
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWD 519 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~l~i~V~d 519 (549)
.|.|+|++|++|+..+..|.+||||++.+++ .+++|+++++|.||.|||.|.|.+... ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 5899999999999999999999999999976 678999999999999999999985321 12469999999
Q ss_pred CCCCCC-ceeEEEEEe
Q 008910 520 HDTFGK-RYLSRYFQN 534 (549)
Q Consensus 520 ~~~~~~-d~lG~~~i~ 534 (549)
++..++ ++||++.+.
T Consensus 80 ~d~~~~d~~iG~~~i~ 95 (135)
T cd04017 80 QDSVGKDEFLGRSVAK 95 (135)
T ss_pred CcCCCCCccceEEEee
Confidence 998876 699999874
No 180
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=1.7e-13 Score=116.29 Aligned_cols=92 Identities=36% Similarity=0.594 Sum_probs=80.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL 528 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 528 (549)
|+|+|++|++|+..+..+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..++ ++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 578999999999988888899999999965 356799999999999999999999986666789999999998765 699
Q ss_pred EEEEEecccccccc
Q 008910 529 SRYFQNRKTWLHDG 542 (549)
Q Consensus 529 G~~~i~l~~l~~~~ 542 (549)
|++.+++.++....
T Consensus 80 G~~~~~l~~l~~~~ 93 (115)
T cd04040 80 GSAYIDLSDLEPEE 93 (115)
T ss_pred EEEEEEHHHcCCCC
Confidence 99999999986643
No 181
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.50 E-value=1.9e-13 Score=118.59 Aligned_cols=91 Identities=26% Similarity=0.448 Sum_probs=77.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc-----------eeeecccccCCCCCcc-ccEEEEEEecCCCCeEEEE
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSE-----------TRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE 516 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----------~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~l~i~ 516 (549)
+..|++++|+||+ .+..|.+||||++++.... ++++|+++++++||+| ||.|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 6678999999999995322 3689999999999999 999999985 34689999
Q ss_pred EEECCCCC----CceeEEEEEecccccccc
Q 008910 517 VWDHDTFG----KRYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 517 V~d~~~~~----~d~lG~~~i~l~~l~~~~ 542 (549)
|||++..+ +++||++.+++.+++..+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccc
Confidence 99976543 479999999999997664
No 182
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.50 E-value=9.6e-14 Score=119.72 Aligned_cols=94 Identities=28% Similarity=0.394 Sum_probs=81.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCC----CCeEEEEEEECCCC
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTF 523 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~l~i~V~d~~~~ 523 (549)
.|.|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+..+. ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence 3789999999999998889999999999976 4567888875 5899999999999998653 57899999999986
Q ss_pred CC-ceeEEEEEeccccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~ 543 (549)
++ ++||++.+++.++...+.
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccC
Confidence 65 699999999999987665
No 183
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.47 E-value=3.9e-13 Score=113.09 Aligned_cols=96 Identities=22% Similarity=0.433 Sum_probs=78.2
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccCCCCCccccEEEEEEecC----CCCeEEEEEEECCCC
Q 008910 452 VTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTF 523 (549)
Q Consensus 452 v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~l~i~V~d~~~~ 523 (549)
+..++|++|+..+..|.+||||++++.+. ...++|++++++.||+|| .|.|.+... ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 44579999999999999999999998653 246899999999999999 688775432 256899999999998
Q ss_pred CC-ceeEEEEEeccccccccccceec
Q 008910 524 GK-RYLSRYFQNRKTWLHDGSEALRL 548 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~ 548 (549)
++ ++||++.++++++.........+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 76 69999999999998665554443
No 184
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.46 E-value=3.1e-13 Score=107.74 Aligned_cols=85 Identities=35% Similarity=0.596 Sum_probs=76.3
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|+|+|++|++|...+..+..|||+++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998433356999999999999999999999887777789999999999888999
Q ss_pred eEEEE
Q 008910 344 IGCAQ 348 (549)
Q Consensus 344 lG~~~ 348 (549)
||+|.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 185
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=5.5e-13 Score=115.25 Aligned_cols=85 Identities=31% Similarity=0.552 Sum_probs=74.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCCCC-ceeEE
Q 008910 454 VILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-RYLSR 530 (549)
Q Consensus 454 v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~-d~lG~ 530 (549)
|++|++|+. ..|.+||||++++++ .+++|++++++.||+|||.|.|.+..+ ....|.|+|||++..++ ++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence 689999998 578899999999976 678999999999999999999999754 45789999999998765 69999
Q ss_pred EEEecccccccc
Q 008910 531 YFQNRKTWLHDG 542 (549)
Q Consensus 531 ~~i~l~~l~~~~ 542 (549)
+.++++++...+
T Consensus 78 ~~~~l~~l~~~~ 89 (127)
T cd08373 78 ATVSLQDLVSEG 89 (127)
T ss_pred EEEEhhHcccCC
Confidence 999999987654
No 186
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.45 E-value=8e-13 Score=116.38 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=73.5
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--e-CCceeeecccccCCCCCccccEEEEEEecCC--------CCeEEEE
Q 008910 450 LSVTVILAEN--LPASDLMGKADPYVVLTM--K-KSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--------HDMLIAE 516 (549)
Q Consensus 450 L~v~v~~a~~--L~~~~~~g~~dpyv~v~~--~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--------~~~l~i~ 516 (549)
..++|..|++ |+..+..+.+||||++++ . ...++.||+++++|+||+|||.|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455566666 777777788999999997 2 3356899999999999999999999996432 3479999
Q ss_pred EEECCCC-C-CceeEEEEEeccccccc
Q 008910 517 VWDHDTF-G-KRYLSRYFQNRKTWLHD 541 (549)
Q Consensus 517 V~d~~~~-~-~d~lG~~~i~l~~l~~~ 541 (549)
|||++.+ + +++||++.++++.+..+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~ 110 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK 110 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc
Confidence 9999986 3 46999999999998443
No 187
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.45 E-value=6.4e-13 Score=110.36 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=65.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECC-----
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD----- 521 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~----- 521 (549)
|.|+|++|+||+ +.+||||++++... ..+.||+++++|+||+|||+|+|.+.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999995 45899999998642 357899999999999999999999963 568999999983
Q ss_pred --CCCC-ceeEEEEEecc
Q 008910 522 --TFGK-RYLSRYFQNRK 536 (549)
Q Consensus 522 --~~~~-d~lG~~~i~l~ 536 (549)
..++ +.+|++.+.++
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 3444 59988777664
No 188
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.42 E-value=1.5e-12 Score=112.73 Aligned_cols=98 Identities=27% Similarity=0.437 Sum_probs=81.1
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEeC----CceeeecccccCCC-CCccccEEEEEEecCCCCeEEEEEEECC
Q 008910 449 VLSVTVILAENLPASD--LMGKADPYVVLTMKK----SETRNKTRVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDHD 521 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~--~~g~~dpyv~v~~~~----~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~l~i~V~d~~ 521 (549)
.|+|+|++|+||+..+ ..+.+||||++++.+ ...+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 577899999999943 23578999887765 9999999999998666668999999999
Q ss_pred CCCCceeEEEEEecccccccccccee
Q 008910 522 TFGKRYLSRYFQNRKTWLHDGSEALR 547 (549)
Q Consensus 522 ~~~~d~lG~~~i~l~~l~~~~~~~~~ 547 (549)
..++++||++.++++++ ..|...++
T Consensus 83 ~~~~~~iG~~~~~l~~l-~~g~~~~~ 107 (128)
T cd00275 83 SGDDDFLGQACLPLDSL-RQGYRHVP 107 (128)
T ss_pred CCCCcEeEEEEEEhHHh-cCceEEEE
Confidence 87557999999999998 44444443
No 189
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.42 E-value=1.5e-12 Score=111.95 Aligned_cols=90 Identities=30% Similarity=0.425 Sum_probs=77.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY 527 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 527 (549)
.|.|+|.+|+ |...+..+.+||||++++++. ..++|+++.++.||.|||.|.|.+.. .+.|.|+|||++..++ ++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~-~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ-PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc-ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcE
Confidence 5899999998 555555788999999999863 47899999999999999999999863 4689999999998865 69
Q ss_pred eEEEEEecccccccc
Q 008910 528 LSRYFQNRKTWLHDG 542 (549)
Q Consensus 528 lG~~~i~l~~l~~~~ 542 (549)
||++.+++.+++...
T Consensus 79 iG~~~i~l~~l~~~~ 93 (125)
T cd04021 79 LGEASLDLSDILKNH 93 (125)
T ss_pred EEEEEEEHHHhHhhc
Confidence 999999999997653
No 190
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.41 E-value=5.6e-13 Score=112.16 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEecccccccccc
Q 008910 465 LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSE 544 (549)
Q Consensus 465 ~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~ 544 (549)
.+|.+||||++++++ ...++|++++++.||.|||.|.|.+.++....|.|+|||++..++++||++.+++.+++..+..
T Consensus 9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 468899999999975 3467899988999999999999999877677899999999988557999999999999876554
Q ss_pred ceecC
Q 008910 545 ALRLF 549 (549)
Q Consensus 545 ~~~~~ 549 (549)
..+||
T Consensus 88 ~~~w~ 92 (111)
T cd04052 88 GQQWF 92 (111)
T ss_pred cceeE
Confidence 44553
No 191
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.38 E-value=2.6e-12 Score=102.36 Aligned_cols=83 Identities=45% Similarity=0.760 Sum_probs=74.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc-eeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY 527 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 527 (549)
|.|+|++|+||+..+..+..||||++.+++.. ..++|+++.++.+|.|||.|.|.+..+..+.|.|+|||++..++ ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 68999999999998888899999999997633 46899999999999999999999887777789999999999885 59
Q ss_pred eEEEE
Q 008910 528 LSRYF 532 (549)
Q Consensus 528 lG~~~ 532 (549)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 192
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.8e-12 Score=131.40 Aligned_cols=120 Identities=31% Similarity=0.611 Sum_probs=100.5
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC--
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI-- 338 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~-- 338 (549)
...++++|+.|.+|..+|..|++||||...++ +.+.+|++|...+||+|||.|+|..++. ++.+++.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHH
Confidence 47899999999999999999999999999998 7778999999999999999999999875 67999999998742
Q ss_pred ---------CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 339 ---------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 339 ---------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
..|||+|+..|.++.|.. ..+.||.|.+..+ ....+|.|++.+...
T Consensus 370 sklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisve 424 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEEE
Confidence 468999999999987753 4589999987643 345677766665543
No 193
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1e-11 Score=128.04 Aligned_cols=95 Identities=33% Similarity=0.457 Sum_probs=82.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECCCC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTF 523 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~~~ 523 (549)
...|.|+|++|++|+..+..|.+||||++++... ..+.+|++.++|+||.|||+|.|.+.. .....|.++|||.|++
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf 245 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF 245 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc
Confidence 4679999999999999997778999999999643 468899999999999999999999753 3556899999999999
Q ss_pred CC-ceeEEEEEeccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~ 541 (549)
++ |+||++.+++..+-..
T Consensus 246 sr~~~iGev~~~l~~~~~~ 264 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLL 264 (421)
T ss_pred ccccEEEEEEecCcccccc
Confidence 87 6999999998887443
No 194
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.31 E-value=1e-12 Score=139.82 Aligned_cols=95 Identities=28% Similarity=0.403 Sum_probs=84.7
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCC
Q 008910 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG 524 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~ 524 (549)
+....++|++.+|-+|.+.|.+|.+|||+++.+|++...-+...+.+|+||+|++.|++.+..+....++++|||+|..+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 34567789999999999999999999999999998666678888899999999999999999888888999999999988
Q ss_pred C-ceeEEEEEeccccc
Q 008910 525 K-RYLSRYFQNRKTWL 539 (549)
Q Consensus 525 ~-d~lG~~~i~l~~l~ 539 (549)
. +.||+..+++++-+
T Consensus 690 ~d~~iget~iDLEnR~ 705 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRW 705 (1105)
T ss_pred ccchhhceehhhhhcc
Confidence 5 69999999998743
No 195
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.31 E-value=3.8e-12 Score=148.59 Aligned_cols=96 Identities=24% Similarity=0.417 Sum_probs=84.7
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC-CCeEEEEEEECCCC
Q 008910 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-HDMLIAEVWDHDTF 523 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~l~i~V~d~~~~ 523 (549)
...|.|.|+|++|.||. +..|.+||||++.+++ ..+.||++++++.||+|||.|+|.+.+|. +..|+|+|||+|.+
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 34799999999999998 4468899999999996 34669999999999999999999998874 45799999999999
Q ss_pred CCceeEEEEEeccccccccc
Q 008910 524 GKRYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 524 ~~d~lG~~~i~l~~l~~~~~ 543 (549)
++|.+|.+.|++.+++.++.
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~ 2073 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGT 2073 (2102)
T ss_pred CCCCCceEEEEHHHHhcCce
Confidence 88999999999999987553
No 196
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.30 E-value=1.6e-11 Score=105.04 Aligned_cols=95 Identities=21% Similarity=0.366 Sum_probs=79.6
Q ss_pred EEEEEEEcccccccC--CCCC--CCcEEEEEEeeCCCCeEEeeeeCCCCC--CeeccEEEEEEecC--------------
Q 008910 264 LEVKLVQAKGLTNKD--LIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE-------------- 323 (549)
Q Consensus 264 L~V~v~~a~~L~~~d--~~g~--~dpyv~v~~~~~~~~~~kT~~~~~t~n--P~w~e~f~f~v~~~-------------- 323 (549)
|+|.|.+|++++..+ ..|. +||||+..+.+....+++|.+.++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966443 3564 999999999865566789999999999 99999999887541
Q ss_pred ---------CCCEEEEEEEECCCCCCCceeEEEEEECcccCCCc
Q 008910 324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358 (549)
Q Consensus 324 ---------~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~ 358 (549)
....|.++|||+|.+++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 23579999999999999999999999999876543
No 197
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=2.7e-11 Score=99.40 Aligned_cols=96 Identities=38% Similarity=0.655 Sum_probs=82.0
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|.|+|++|++|......+..+||+++.+.+......+|+++.++.||.|||+|.|.+.....+.|.++|||++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 67999999999987765688999999998322257899999999999999999999987657799999999998777899
Q ss_pred eEEEEEECcccCCCce
Q 008910 344 IGCAQVRLCELEPGKV 359 (549)
Q Consensus 344 lG~~~v~l~~l~~~~~ 359 (549)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999998866543
No 198
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=3e-11 Score=98.94 Aligned_cols=101 Identities=39% Similarity=0.725 Sum_probs=86.4
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 343 (549)
|.|.|++|++|......+..+|||.+.+.. ...++|+++.++.||.|++.|.|.+.......+.++||+.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 468999999998876677899999999972 377899999999999999999999986456789999999998877899
Q ss_pred eEEEEEECcccC-CCceeEEEEEc
Q 008910 344 IGCAQVRLCELE-PGKVKDVWLKL 366 (549)
Q Consensus 344 lG~~~v~l~~l~-~~~~~~~w~~L 366 (549)
+|.+.+++.++. .......|++|
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceecC
Confidence 999999999987 66666777654
No 199
>PLN03008 Phospholipase D delta
Probab=99.27 E-value=1.3e-11 Score=132.32 Aligned_cols=101 Identities=24% Similarity=0.479 Sum_probs=83.2
Q ss_pred ccccEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEeCCce
Q 008910 445 IIRGVLSVTVILAENLPASDL------------------------------------------MGKADPYVVLTMKKSET 482 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~------------------------------------------~g~~dpyv~v~~~~~~~ 482 (549)
..-|.|.++|.+|++|+.++. .+++||||+|.+++ .+
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r 89 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT 89 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence 345889999999999985221 23679999999975 45
Q ss_pred eeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceec
Q 008910 483 RNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRL 548 (549)
Q Consensus 483 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~ 548 (549)
..||++++++.||+|||+|.|.|.++. ..|+|+|||++.++.|+||++.|+++++.. |.....|
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~-Ge~vd~W 153 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGAQIIGTAKIPVRDIAS-GERISGW 153 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccCCceeEEEEEEHHHcCC-CCceEEE
Confidence 679999999999999999999998754 589999999999998999999999999755 3434444
No 200
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.26 E-value=3.1e-11 Score=102.68 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=66.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC--CCeEEEEEEECCCCCC-c
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-R 526 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~~~~~~-d 526 (549)
|.|+|++|++|+.. |.+||||++++++ ...++|+++++ .||.|||+|.|.+.... ...|.+.+||.+..++ .
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 78999999999976 7899999999975 34578999888 99999999999997532 2467888898876654 4
Q ss_pred eeEEEEEeccc
Q 008910 527 YLSRYFQNRKT 537 (549)
Q Consensus 527 ~lG~~~i~l~~ 537 (549)
.+|.+.|+...
T Consensus 77 ~~g~v~l~~~~ 87 (117)
T cd08383 77 VIGKVALSKLD 87 (117)
T ss_pred EEEEEEecCcC
Confidence 77777665543
No 201
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.23 E-value=6.4e-11 Score=101.28 Aligned_cols=93 Identities=25% Similarity=0.315 Sum_probs=77.8
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEEeCC-ceeeecccccCCCC--CccccEEEEEEecC--------------
Q 008910 450 LSVTVILAENLPASD--LMG--KADPYVVLTMKKS-ETRNKTRVVNDCLN--PIWNQTFDFVVEDG-------------- 508 (549)
Q Consensus 450 L~v~v~~a~~L~~~~--~~g--~~dpyv~v~~~~~-~~~~kT~~~~~t~n--P~wne~f~f~v~~~-------------- 508 (549)
|+|.|.+|++++..+ ..| .+||||+..+.+. ..+++|.+.++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999976543 356 4999999999764 67899999999999 99999999987642
Q ss_pred ---------CCCeEEEEEEECCCCCC-ceeEEEEEecccccccc
Q 008910 509 ---------LHDMLIAEVWDHDTFGK-RYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 509 ---------~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~ 542 (549)
....|.++|||+|.++. |+||.+++++..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 23589999999999876 69999999999886654
No 202
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.23 E-value=5e-11 Score=103.91 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=77.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC-C--
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT-F-- 523 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~-~-- 523 (549)
...|.|.|.+|++|+.++ +|||.+.+++ ....||+++.++.||.|+|.|.|.+..+ -..+.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccc
Confidence 467999999999998764 7999999997 3557999999999999999999986543 3579999976543 3
Q ss_pred --CCceeEEEEEeccccccccccceecC
Q 008910 524 --GKRYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 524 --~~d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
++++||.+.|+++++. .+.....||
T Consensus 83 ~~~~~~IG~V~Ip~~~l~-~~~~ve~Wf 109 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVS-SRQFVEKWY 109 (146)
T ss_pred ccCCcEEEEEEEEHHHhc-CCCcccEEE
Confidence 2369999999999987 566677765
No 203
>PLN02270 phospholipase D alpha
Probab=99.18 E-value=2.4e-10 Score=122.67 Aligned_cols=128 Identities=23% Similarity=0.429 Sum_probs=105.7
Q ss_pred eeEEEEEEEEcccccccC------------------CCCCCCcEEEEEEeeCCCCeEEeeeeCCC-CCCeeccEEEEEEe
Q 008910 261 VGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVE 321 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~w~e~f~f~v~ 321 (549)
.|.|.|+|.+|++|++++ ..+.+|||+.+.+. +.+..||+++.+. .||.|+|+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEeec
Confidence 599999999999998632 12467999999997 4678899999875 69999999999998
Q ss_pred cCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecccC
Q 008910 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (549)
Q Consensus 322 ~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (549)
... ..+.|.|.|.|.++ ..+||.+.+|..++..+...+.|+++..... +..+...+|++++.|.|....
T Consensus 85 h~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~--~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDK--NPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCC--CcCCCCCEEEEEEEEEEcccC
Confidence 775 48999999999886 4699999999999999999999999975431 222334599999999997654
No 204
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.17 E-value=1.9e-10 Score=92.44 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=72.7
Q ss_pred HHHHHHHhH-HH-HHHHHHHHHHhHHHHHhhc-CCCCcceEEEEEEecCCCCceeeeEEEEeC-CCCeEEEEEEEEEecC
Q 008910 75 NHHLEKLWP-YV-NEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN 150 (549)
Q Consensus 75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~~-~p~~~~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~~~~~~~ 150 (549)
|.++.+++- +. ++.+.+.+++.++..|++. +|++++.|++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 667777655 44 3688999999999999984 699999999999999999999999999865 4456999999999999
Q ss_pred ceEEEEEEe
Q 008910 151 SSIILAIKT 159 (549)
Q Consensus 151 ~~i~l~~~~ 159 (549)
..+.++++.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 988888763
No 205
>PLN02223 phosphoinositide phospholipase C
Probab=99.17 E-value=5.4e-10 Score=115.39 Aligned_cols=104 Identities=26% Similarity=0.372 Sum_probs=85.0
Q ss_pred eeEEEEEEEEcccccc-----cCCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEE
Q 008910 261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 333 (549)
...|.|+|++|.++.. .+.....||||++.+. +.....++|.+..++.||+|||+|.|.+..++--.|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3679999999998751 1223467999999996 33344677888889999999999999999887778999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
|+|....|+|+|++.+|+..|..|- .+++|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~ 518 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY 518 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence 9998888999999999999998875 445664
No 206
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.4e-11 Score=121.57 Aligned_cols=93 Identities=32% Similarity=0.572 Sum_probs=82.7
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC-
Q 008910 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF- 523 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~- 523 (549)
..++.++++|.+|.+|..+|.+|++||||.+.+++ .+.+|+++...+||+|||.|.|.|++ ..+.|.+.|||+|.-
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl 368 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL 368 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence 46789999999999999999999999999999997 78899999999999999999999997 557899999998752
Q ss_pred -----------CCceeEEEEEecccccc
Q 008910 524 -----------GKRYLSRYFQNRKTWLH 540 (549)
Q Consensus 524 -----------~~d~lG~~~i~l~~l~~ 540 (549)
++||+|+..|.+..+--
T Consensus 369 ksklrqkl~resddflgqtvievrtlsg 396 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLSG 396 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEeccc
Confidence 24799999999887743
No 207
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=4.7e-10 Score=91.94 Aligned_cols=94 Identities=38% Similarity=0.674 Sum_probs=79.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY 527 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 527 (549)
+.+.|++|++|......+..+|||++++... ...++|+++.++.||.|||.|.|.+..+....|.|+|||++..+. .+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6789999999998876567899999999763 247889988888899999999999986656789999999987764 69
Q ss_pred eEEEEEeccccccccc
Q 008910 528 LSRYFQNRKTWLHDGS 543 (549)
Q Consensus 528 lG~~~i~l~~l~~~~~ 543 (549)
+|.+.+++.++.....
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999866543
No 208
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.09 E-value=8.9e-10 Score=90.07 Aligned_cols=97 Identities=46% Similarity=0.728 Sum_probs=80.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL 528 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 528 (549)
|.|.|++|+++......+..+|||.+.+.+ ...++|++..++.||.||+.|.|.+.......+.|+||+.+..+. .++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence 468999999998876677899999999876 467789998899999999999999986456789999999998764 699
Q ss_pred EEEEEecccccccccccee
Q 008910 529 SRYFQNRKTWLHDGSEALR 547 (549)
Q Consensus 529 G~~~i~l~~l~~~~~~~~~ 547 (549)
|++.+++.++.........
T Consensus 80 g~~~~~l~~l~~~~~~~~~ 98 (102)
T cd00030 80 GEVEIPLSELLDSGKEGEL 98 (102)
T ss_pred EEEEEeHHHhhhcCCcCcc
Confidence 9999999998733333333
No 209
>PLN02952 phosphoinositide phospholipase C
Probab=99.09 E-value=1.5e-09 Score=114.56 Aligned_cols=105 Identities=25% Similarity=0.393 Sum_probs=86.2
Q ss_pred eeEEEEEEEEccccccc------CCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 008910 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 332 (549)
...|.|+|++|.+++.. +.....||||++.+- +....+++|+++.++.||.|||+|.|.+..++...+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999887521 112345999999986 3334567899999999999999999999887766899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
||+|..+.++++|++.+|+..|..|- .|++|..
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99998888999999999999999885 4788853
No 210
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.08 E-value=1.7e-10 Score=123.21 Aligned_cols=276 Identities=21% Similarity=0.237 Sum_probs=159.5
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCe--EEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 339 (549)
-..+|.|++|-+|.+.|.+|.+|||+++.++ ++. -+...+.+|+||+|.+.|++....+....+.++|||+|..+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 3567999999999999999999999999998 333 55677899999999999999988887779999999999999
Q ss_pred CCceeEEEEEECccc-CC------Cc-------eeEEEEEccccccc-----cCCCc----eeeEEEEEEEEeecccCCc
Q 008910 340 SSELIGCAQVRLCEL-EP------GK-------VKDVWLKLVKDLDV-----QRDTK----YRGQVHLELLYCPFGMENV 396 (549)
Q Consensus 340 ~d~~lG~~~v~l~~l-~~------~~-------~~~~w~~L~~~~~~-----~~~~~----~~G~l~l~l~~~p~~~~~~ 396 (549)
+|+.+|+..++|+.= .. +. ....|..-...... +..+. ..++. ..+.|.......+
T Consensus 690 ~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d 768 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYD 768 (1105)
T ss_pred ccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhc
Confidence 999999999998752 10 00 11233322211110 00000 01111 1222211100000
Q ss_pred ---ccCCCCCCCCcch---HHHHhhcc----cccccCCCCCchhhhhhhhhhhhccc----------------cccccEE
Q 008910 397 ---FTNPFAPNFSMTS---LEKVLTNG----EKALKSGANGTEAIELEKDASQKRRE----------------VIIRGVL 450 (549)
Q Consensus 397 ---~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~g~L 450 (549)
...+..+.+.... ....+... +|...........+..++...+.|.+ .+...-+
T Consensus 769 ~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~l 848 (1105)
T KOG1326|consen 769 EKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYEL 848 (1105)
T ss_pred ccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeE
Confidence 0000001111000 00000000 11110000000111111111111110 1345678
Q ss_pred EEEEEEeecCCCCCCCC----CCCcEEEEEEe-CCceeeecccccCCC--CCccccEEEEEEec----------------
Q 008910 451 SVTVILAENLPASDLMG----KADPYVVLTMK-KSETRNKTRVVNDCL--NPIWNQTFDFVVED---------------- 507 (549)
Q Consensus 451 ~v~v~~a~~L~~~~~~g----~~dpyv~v~~~-~~~~~~kT~~~~~t~--nP~wne~f~f~v~~---------------- 507 (549)
+|.|..-.++...+.++ ++|-||+-.+- ..+.+++|.+.+.++ .-.||-.|.|....
T Consensus 849 rviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~w 928 (1105)
T KOG1326|consen 849 RVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSW 928 (1105)
T ss_pred EEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcc
Confidence 88888887776655332 47899987764 445678888887654 45566666665320
Q ss_pred ----C---CCCeEEEEEEECCCCCC-ceeEEEEEeccccccc
Q 008910 508 ----G---LHDMLIAEVWDHDTFGK-RYLSRYFQNRKTWLHD 541 (549)
Q Consensus 508 ----~---~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~ 541 (549)
. ....|.|+|||.|.++. ||||..+++|++...-
T Consensus 929 s~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p 970 (1105)
T KOG1326|consen 929 SLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP 970 (1105)
T ss_pred ccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence 0 11269999999999987 5999999999988653
No 211
>PLN02223 phosphoinositide phospholipase C
Probab=99.04 E-value=1.3e-09 Score=112.58 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=81.9
Q ss_pred ccEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEE
Q 008910 447 RGVLSVTVILAENLPAS-----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW 518 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~-----~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~ 518 (549)
...|.|+|++|++++.. +....+||||+|.+.+ ...+++|.+..++.||+|||+|+|.+..|.-..|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999998521 1234579999999954 234567877778899999999999999888888999999
Q ss_pred ECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910 519 DHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 519 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
|+|..++ +++|++.+++..+ ..|...++|+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~L-r~GyR~VpL~ 518 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSEL-IEGIRAVPLY 518 (537)
T ss_pred ecCCCCCCcEEEEEecchHHh-cCCceeEecc
Confidence 9998765 7999999999998 6666666653
No 212
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.02 E-value=6.4e-11 Score=122.02 Aligned_cols=128 Identities=34% Similarity=0.595 Sum_probs=103.9
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC----------------------------CeEEeeeeCCCCCCe
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----------------------------KTKKSKTINNDLNPI 311 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~kT~~~~~t~nP~ 311 (549)
|.--|.|.+.+|++|.++|.+|.+|||+...+.+... -.+-|+++++|+||+
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 4455678889999999999999999999987753210 024588899999999
Q ss_pred eccEEEEEEecCCCCEEEEEEEECCCC---------------------------------CC---CceeEEEEEECcccC
Q 008910 312 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE 355 (549)
Q Consensus 312 w~e~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~~---d~~lG~~~v~l~~l~ 355 (549)
|+|.|.|.+.+..++.+.+.+||+|.- +. |||+|++.+|+.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999999999999999998821 22 799999999999986
Q ss_pred CCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910 356 PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (549)
Q Consensus 356 ~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (549)
.. ..+.||.|++.. ..++..|.+++.+.....
T Consensus 272 ~~-Gld~WFkLepRS---~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 272 PD-GLDQWFKLEPRS---DKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred cc-hHHHHhccCccc---ccccccceEEEEEEEeee
Confidence 54 468999998753 356788999999877543
No 213
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.97 E-value=7.1e-09 Score=109.33 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=84.3
Q ss_pred eeEEEEEEEEccccccc------CCCCCCCcEEEEEEee--CCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 008910 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 332 (549)
..+|.|+|+.+.++... +.....||||++.+-. ....+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 36899999999987421 2223579999999862 233457888889999999999999999888777899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
+|+|...+|+|+|+..+|+..|..|-. .++|.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~ 579 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLF 579 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEecc
Confidence 999988889999999999999988743 34654
No 214
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.94 E-value=7.9e-09 Score=105.83 Aligned_cols=183 Identities=21% Similarity=0.322 Sum_probs=130.5
Q ss_pred CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC----CCCceeEEEEEECcccCCCceeEEEEEccccccc
Q 008910 297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV 372 (549)
Q Consensus 297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~----~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~ 372 (549)
+..+|.++.+.+||.|.+.|.+.......|.+++.++|.+.. ...+|+|++...+.++........-+.+.+
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~---- 116 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP---- 116 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc----
Confidence 346899999999999999998888777788999999997753 456899999999998765433222222211
Q ss_pred cCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHHhhcccccccCCCCCchhhhhhhhhhhhccccccccEEEE
Q 008910 373 QRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSV 452 (549)
Q Consensus 373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v 452 (549)
......|+|.+...=. ........
T Consensus 117 -~~~~~~g~iti~aee~-------------------------------------------------------~~~~~~~~ 140 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEED-------------------------------------------------------ESDNDVVQ 140 (529)
T ss_pred -CccCCcccEEEEeecc-------------------------------------------------------cccCceee
Confidence 1223456666654321 00112333
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEe--C--CceeeecccccCCCCCccccEEEEEEe----cCCCCeEEEEEEECCCCC
Q 008910 453 TVILAENLPASDLMGKADPYVVLTMK--K--SETRNKTRVVNDCLNPIWNQTFDFVVE----DGLHDMLIAEVWDHDTFG 524 (549)
Q Consensus 453 ~v~~a~~L~~~~~~g~~dpyv~v~~~--~--~~~~~kT~~~~~t~nP~wne~f~f~v~----~~~~~~l~i~V~d~~~~~ 524 (549)
-..+|++|..++..+++|||..++-. . ....++|.+++++++|.|.+ |..... ...+..+.+.+||++..+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 44669999999999999999998752 2 22368999999999999984 333322 123467999999999988
Q ss_pred C-ceeEEEEEecccccc
Q 008910 525 K-RYLSRYFQNRKTWLH 540 (549)
Q Consensus 525 ~-d~lG~~~i~l~~l~~ 540 (549)
+ ++||.+..++.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 7 799999998888754
No 215
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.93 E-value=1.7e-08 Score=106.33 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=84.3
Q ss_pred eeEEEEEEEEccccc----cc--CCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 008910 261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 332 (549)
...|.|+|+.+.++. .. +.....||||++.+. +....+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 11 122457999999986 3334568899999999999999999999888777899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (549)
Q Consensus 333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (549)
+|+|....|+++|++.+|+..|..|-. .++|..
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 999987889999999999999988743 346543
No 216
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.92 E-value=3.2e-09 Score=85.03 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=71.8
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCc
Q 008910 450 LSVTVILAENLPASD---LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKR 526 (549)
Q Consensus 450 L~v~v~~a~~L~~~~---~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d 526 (549)
|.|+|.+|+|+.-.+ ..+.+||||.+++++ ..+.||++ +.||.|||.|.|.+. ....+.+.|||+..-..-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence 578999999998776 567789999999987 34788885 589999999999995 456899999998543234
Q ss_pred eeEEEEEecccccccc
Q 008910 527 YLSRYFQNRKTWLHDG 542 (549)
Q Consensus 527 ~lG~~~i~l~~l~~~~ 542 (549)
-||...+.++++.++.
T Consensus 75 Pi~llW~~~sdi~Ee~ 90 (109)
T cd08689 75 PVGLLWLRLSDIAEEI 90 (109)
T ss_pred ceeeehhhHHHHHHHH
Confidence 7999999999997654
No 217
>PLN02228 Phosphoinositide phospholipase C
Probab=98.91 E-value=2.4e-08 Score=104.88 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=94.1
Q ss_pred eeEEEEEEEEcccccc---c---CCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCee-ccEEEEEEecCCCCEEEEE
Q 008910 261 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 331 (549)
...|.|+|++|.+|+. . +.....||||++.+. +.....++|+++.++.||.| ||+|.|.+..++-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999998731 1 122347999999986 33345689999988999999 9999999988877789999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 332 v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
|+|+|..+.|+++|++.+|+..|..|-. .++|.... ...-..++|.+.+.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence 9999987889999999999999987743 34664321 12223467888887764
No 218
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.88 E-value=1.3e-08 Score=107.35 Aligned_cols=121 Identities=23% Similarity=0.373 Sum_probs=91.9
Q ss_pred EEEEEEEEcccccccC----CCCCCCcEEEEEEe--eCCCCeEEee-eeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910 263 TLEVKLVQAKGLTNKD----LIGKSDPYAVLFVR--PLPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d----~~g~~dpyv~v~~~--~~~~~~~kT~-~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 335 (549)
+|.|+|+++.++...- ....+||||.+.+. |......+|+ +..++-||.|+|+|.|.+..|+-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766432 12457999999985 3334467888 568899999999999999999888899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
|..++|+|+|+..+|+..|..|-.+ ++|.... ...-....|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~---G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSRE---GEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCCC---CccccceeEEEEEEEe
Confidence 9999999999999999999887543 3443221 1222345666666653
No 219
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=1.5e-08 Score=106.93 Aligned_cols=102 Identities=25% Similarity=0.361 Sum_probs=82.2
Q ss_pred ccEEEEEEEEeecCCCC------CCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEE
Q 008910 447 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 517 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~------~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V 517 (549)
...|.|+|+.+.+++.. +.....||||+|.+.+ ...+++|++..++.||+|||+|+|.+..|.-..|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987532 1223479999999853 23467888888899999999999999988778999999
Q ss_pred EECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910 518 WDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+|++..++ ||+|+..|++..+ +.|...++|+
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~L-r~GyR~V~L~ 579 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEI-RQGIHAVPLF 579 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHh-hCccceEecc
Confidence 99998655 7999999999998 6666666653
No 220
>PLN02952 phosphoinositide phospholipase C
Probab=98.83 E-value=2.2e-08 Score=105.91 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=80.4
Q ss_pred ccEEEEEEEEeecCCCCC------CCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEE
Q 008910 447 RGVLSVTVILAENLPASD------LMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 517 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~------~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V 517 (549)
...|.|+|+.|++++... .....||||+|.+.+ ...+++|+++.++.||+|||+|.|.+..+.-..+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 467999999999975321 122359999999854 23567899999889999999999999887777899999
Q ss_pred EECCCCCC-ceeEEEEEeccccccccccceec
Q 008910 518 WDHDTFGK-RYLSRYFQNRKTWLHDGSEALRL 548 (549)
Q Consensus 518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~ 548 (549)
||+|..++ |++|++.+++..+ ..|...++|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~L-r~GyR~VpL 579 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSEL-RPGIRSVPL 579 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHh-cCCceeEeC
Confidence 99998765 7999999999998 445555544
No 221
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=102.47 Aligned_cols=124 Identities=25% Similarity=0.427 Sum_probs=102.8
Q ss_pred eEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeec-cEEEEEEecC--CCCEEEEEEEECCC
Q 008910 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG 337 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~-e~f~f~v~~~--~~~~L~i~v~d~~~ 337 (549)
|.|.|+|..|++|+-+|.. ...|.||.+.+. ...+||.+-.+++||.|| +.|.|.+.+. ....|.+.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7889999999999999865 467999999998 788999999999999999 5689998764 55689999999999
Q ss_pred CCCCceeEEEEEECcccC----------CCceeEEEEEccccccccCCCceeeEEEEEEEEeeccc
Q 008910 338 IQSSELIGCAQVRLCELE----------PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (549)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~----------~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (549)
.+.+|-||.+.++++.|. .+.....|+++... -...+|+|.+-+..--|.+
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-----ihgirgeinvivkvdlfnd 140 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-----IHGIRGEINVIVKVDLFND 140 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-----cccccceeEEEEEEeehhh
Confidence 999999999999998873 23456789998743 3457899988776654444
No 222
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.81 E-value=1.5e-08 Score=81.19 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=68.5
Q ss_pred EEEEEEEcccccccC---CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910 264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (549)
Q Consensus 264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 340 (549)
|.|+|..|+|+...+ ..+.+||||.++++ ..++.||++ +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 579999999999877 56889999999997 344777775 589999999999994 35699999999965 34
Q ss_pred CceeEEEEEECcccC
Q 008910 341 SELIGCAQVRLCELE 355 (549)
Q Consensus 341 d~~lG~~~v~l~~l~ 355 (549)
.--+|..-+.++++.
T Consensus 73 ~~Pi~llW~~~sdi~ 87 (109)
T cd08689 73 PVPVGLLWLRLSDIA 87 (109)
T ss_pred ecceeeehhhHHHHH
Confidence 557888888888774
No 223
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.79 E-value=3.4e-08 Score=104.09 Aligned_cols=102 Identities=22% Similarity=0.282 Sum_probs=81.7
Q ss_pred ccEEEEEEEEeecCCC--C----CCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEE
Q 008910 447 RGVLSVTVILAENLPA--S----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 517 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~--~----~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V 517 (549)
...|.|+|+.+++++. . +.....||||+|.+.+ ...+++|+++.++.||+|||.|+|.+..|.-..|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 4679999999988532 1 1223479999999953 24567899999889999999999999888778999999
Q ss_pred EECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910 518 WDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+|+|..+. +++|+..++++.+ ..|...++|+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~L-r~GyR~V~L~ 562 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWEL-SQGIRAFPLH 562 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhh-hCccceEEcc
Confidence 99987664 7999999999998 6666666653
No 224
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=2.6e-08 Score=105.07 Aligned_cols=100 Identities=24% Similarity=0.370 Sum_probs=82.0
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEEeC---Cceeeecccc-cCCCCCccccEEEEEEecCCCCeEEEEEEEC
Q 008910 449 VLSVTVILAENLPASDL----MGKADPYVVLTMKK---SETRNKTRVV-NDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH 520 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~----~g~~dpyv~v~~~~---~~~~~kT~~~-~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~ 520 (549)
.|.|.|+++.+++.... ...+||||.|.+.+ ...+.+|+++ .++-||.|+|+|+|.+..|.-.-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997765432 23479999999854 3457788844 4788999999999999999888999999999
Q ss_pred CCCCC-ceeEEEEEeccccccccccceecC
Q 008910 521 DTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+..++ ||+|+..++++++ ..|...++|+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L-~~GyRhVpL~ 725 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSEL-RQGYRHVPLL 725 (746)
T ss_pred CCCCcccccceeeccHHHh-hCceeeeeec
Confidence 99885 7999999999998 6666666654
No 225
>PLN02228 Phosphoinositide phospholipase C
Probab=98.69 E-value=9.5e-08 Score=100.51 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=81.6
Q ss_pred ccEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEeC---CceeeecccccCCCCCcc-ccEEEEEEecCCCCeEEEE
Q 008910 447 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE 516 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~----~--~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~l~i~ 516 (549)
...|.|+|++|++|+. . +.....||||+|.+.+ ...+++|+++.++.||.| ||.|+|.+..+.-..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998742 1 1123479999999853 235678998888899999 9999999998877899999
Q ss_pred EEECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910 517 VWDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 517 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
|+|++..+. +++|++.|+++.+ ..|...++|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~L-r~GYR~VpL~ 542 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPEL-KSGVRAVRLH 542 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHh-hCCeeEEEcc
Confidence 999987655 6999999999998 6777666664
No 226
>PLN02270 phospholipase D alpha
Probab=98.66 E-value=9.8e-08 Score=102.95 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=82.8
Q ss_pred cccEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEeCCceeeecccccCC-CCCccccEEEEEEe
Q 008910 446 IRGVLSVTVILAENLPASD------------------LMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVE 506 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~------------------~~g~~dpyv~v~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~ 506 (549)
.-|.|.++|.+|++|+..+ ..+.+||||.|.+++ .+..||+++.+. .||.|||.|...|.
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeec
Confidence 3489999999999998631 124679999999986 567899999874 69999999999998
Q ss_pred cCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceec
Q 008910 507 DGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRL 548 (549)
Q Consensus 507 ~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~ 548 (549)
... ..++|.|+|.+.++..+||++.|++.+++.. ...-+|
T Consensus 85 h~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g-~~i~~~ 124 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDG-EEVDRW 124 (808)
T ss_pred cCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCC-CccccE
Confidence 755 5799999999999999999999999998663 345444
No 227
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.64 E-value=1.2e-07 Score=99.45 Aligned_cols=90 Identities=29% Similarity=0.417 Sum_probs=75.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC----CceeeecccccCCCCCccc-cEEEEEEecCCCCeEEEEEEECCC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRVVNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDT 522 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~l~i~V~d~~~ 522 (549)
-.|.|.|+.|++|+... -|...|||.|.+-+ ....++|.++.+++||+|| |.|+|.+.+|.-..|.+.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 57899999999999543 45567999999843 1234555566688999999 999999999988999999999999
Q ss_pred CCC-ceeEEEEEecccc
Q 008910 523 FGK-RYLSRYFQNRKTW 538 (549)
Q Consensus 523 ~~~-d~lG~~~i~l~~l 538 (549)
+++ .|||++..++..+
T Consensus 1144 fs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred cCCcceeeeeecchhhh
Confidence 998 6999999999877
No 228
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.63 E-value=1.6e-07 Score=98.61 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=92.0
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEe--eCCCCe-EEeeeeCCCCCCeec-cEEEEEEecCCCCEEEEEEEECCC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKT-KKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG 337 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~-~kT~~~~~t~nP~w~-e~f~f~v~~~~~~~L~i~v~d~~~ 337 (549)
-.|.|.|+.|++|+... .|...|||.+.+- +-...+ ++|.++.+++||+|| |.|+|.+.+|+--.|+|.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 56889999999999543 3566799999985 222334 455567899999999 999999999988889999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeeccc
Q 008910 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (549)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (549)
++...|||++..|+..+..|-. -++|... ....-.-..|.+.+...|...
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~---ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNG---YSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccC---chhhhhhhhheeeeEeccccC
Confidence 9888999999999999876632 2344211 111122355666666666443
No 229
>PLN02352 phospholipase D epsilon
Probab=98.62 E-value=3.2e-07 Score=98.84 Aligned_cols=121 Identities=14% Similarity=0.323 Sum_probs=92.3
Q ss_pred eeEEEEEEEEccccccc----CCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910 261 VGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 335 (549)
.|.|.++|.+|+-+... +.. ...|||+.+.+. +.+..|| .+..||.|+|+|.+.+.......+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence 59999999999843321 111 123999999997 4556777 556699999999999988764579999988
Q ss_pred CCCCCCceeEEEEEECcccCCCce-eEEEEEccccccccCCCceeeEEEEEEEEeecccC
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (549)
...+||.+.+|..++..+.. .+.|+++...... ... ..+|++++.|.|....
T Consensus 83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~--p~~-~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK--PNP-ELKLRFMLWFRPAELE 135 (758)
T ss_pred ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC--CCC-CCEEEEEEEEEEhhhC
Confidence 25799999999999988866 8999999764321 111 2599999999998764
No 230
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.61 E-value=1.2e-08 Score=105.55 Aligned_cols=94 Identities=32% Similarity=0.492 Sum_probs=80.2
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecC----CCCEEEEEEE
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIY 333 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~----~~~~L~i~v~ 333 (549)
..|.|.|+.|+++.+-|.+|.+||||++.+.|.. ....+|+++.+|+||+|+|+|+|.|... +.-.+.|.|.
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence 3456667889999999999999999999998532 2368899999999999999999999643 2447899999
Q ss_pred ECCCCCCCceeEEEEEECcccC
Q 008910 334 DDEGIQSSELIGCAQVRLCELE 355 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~ 355 (549)
|+|-...+||-|++.+.|.++.
T Consensus 1027 DHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccceecccccchHHHHhhCCCC
Confidence 9999999999999999998774
No 231
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.58 E-value=8.4e-08 Score=99.65 Aligned_cols=120 Identities=22% Similarity=0.304 Sum_probs=91.1
Q ss_pred EEcccccccCCCCCCCcEEEEEEe-eCCCCeEEeeeeCCCCCCeeccEEEEEEecC---------------CCCEEEEEE
Q 008910 269 VQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQHLVVRI 332 (549)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~~~-~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---------------~~~~L~i~v 332 (549)
++++++.+.+ ++.+|||+++... +...+..+|+++++|.+|.|+|.|.|.+... ....+++.+
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 3445555444 4569999999986 2333457899999999999999999998643 234688999
Q ss_pred EE-CCCCCCCceeEEEEEECcccCCCceeEEEEEcccccccc--CCCceeeEEEEEEEEe
Q 008910 333 YD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ--RDTKYRGQVHLELLYC 389 (549)
Q Consensus 333 ~d-~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~--~~~~~~G~l~l~l~~~ 389 (549)
|+ .+....++|+|++.+++..+........||.|++..... .++..-|.+++.++|.
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 99 555566999999999999888777788999998765432 2345568999999885
No 232
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.41 E-value=1.9e-07 Score=101.69 Aligned_cols=107 Identities=26% Similarity=0.413 Sum_probs=89.9
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEE---EecCCCCEEEEEEEEC
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYDD 335 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~---v~~~~~~~L~i~v~d~ 335 (549)
.|+|.|-|..|++|.-..-...+||||+.++.|++.+ +.||+++++|.||.|||...+. .....+..|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 5899999999999965554567999999999976544 5789999999999999987655 2223456899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (549)
+....+.++|.+.++|.++...++...||.|.
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 99999999999999999987777777999984
No 233
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.39 E-value=3.7e-07 Score=99.51 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=80.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEE---EecCCCCeEEEEEEEC
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWDH 520 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~---v~~~~~~~l~i~V~d~ 520 (549)
.|.|.|.|+-|++|+.......+||||+.++.. +..+.||+++.+|+||.|||...+. ........|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 488999999999997766666799999999943 3467899999999999999998876 2223456899999998
Q ss_pred CCCCC-ceeEEEEEeccccccccccceecC
Q 008910 521 DTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+.... .++|.+.|+|.++- ...+.+.||
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~-l~kE~~~Wy 1631 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVD-LLKESVGWY 1631 (1639)
T ss_pred cceeeeeeeeeeecchhhcc-hhhhhccee
Confidence 88766 59999999999873 223344554
No 234
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.32 E-value=9.2e-07 Score=89.68 Aligned_cols=91 Identities=30% Similarity=0.444 Sum_probs=79.4
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCceeeecccccCCCCCccc-cEEEEEEecC--CCCeEEEEEEECCCC
Q 008910 448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVEDG--LHDMLIAEVWDHDTF 523 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~--~~~~l~i~V~d~~~~ 523 (549)
|.|-|+|..|++||.+|.. ...|.||+++++. ..+||.+..+++||.|| +-|.|.+.+. .++.|.|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999998864 4579999999987 88999999999999999 4588988753 566899999999998
Q ss_pred CC-ceeEEEEEecccccc
Q 008910 524 GK-RYLSRYFQNRKTWLH 540 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~ 540 (549)
+. |-||.+.|+++-+.-
T Consensus 81 sandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred ccccccceeeeccChHHH
Confidence 76 899999999998854
No 235
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.27 E-value=3.3e-06 Score=86.92 Aligned_cols=172 Identities=25% Similarity=0.394 Sum_probs=108.2
Q ss_pred EEEEEEEeecCCCCCCceeeEEEEecccceeeEEEEEcccCcccCcchHH-HHHHHHHHHhhccccccceeeccCC--CC
Q 008910 175 TGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSD-SIEATIHDAIEDSITWPVRKIVPIL--PG 251 (549)
Q Consensus 175 ~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~l~f~~~~~g~~~~~iP~l~~-~~~~~i~~~i~~~~~~P~~~~ip~~--~~ 251 (549)
.|+..++.+-+.|.|-....+.+.|++.+.+.|.+...+... +.+.. .+.+...+.+.++.. -.....++. ++
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~---~~l~~~dflg~~~c~l~~ivs-~~~~~~~l~~~~~ 117 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT---PDLSSADFLGTAECTLSQIVS-SSGLTGPLLLKPG 117 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc---CCcchhcccceeeeehhhhhh-hhhhhhhhhcccC
Confidence 356667776677777777778999999999999998775321 11111 111111111111110 000011100 00
Q ss_pred CCcccccCceeEEEE-------------EEEEcccccccCCCCCCCcEEEEEEee-C--CCCeEEeeeeCCCCCCeeccE
Q 008910 252 DYSELELKPVGTLEV-------------KLVQAKGLTNKDLIGKSDPYAVLFVRP-L--PEKTKKSKTINNDLNPIWNEH 315 (549)
Q Consensus 252 ~~~~~~~~~~g~L~V-------------~v~~a~~L~~~d~~g~~dpyv~v~~~~-~--~~~~~kT~~~~~t~nP~w~e~ 315 (549)
.....|.+.+ -..+|++|.++|..+++|||..++-.- . ....++|+++++++||.|.+
T Consensus 118 -----~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~- 191 (529)
T KOG1327|consen 118 -----KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP- 191 (529)
T ss_pred -----ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-
Confidence 0001122222 224588999999999999999888652 1 12358999999999999988
Q ss_pred EEEEEecC----CCCEEEEEEEECCCCCCCceeEEEEEECcccCC
Q 008910 316 FEFIVEDE----STQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356 (549)
Q Consensus 316 f~f~v~~~----~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~ 356 (549)
|....... ....+.+.+||++..++++++|.+..++.++..
T Consensus 192 ~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 192 FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 55554432 235788999999998889999999999988864
No 236
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.17 E-value=2.8e-06 Score=70.41 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=76.7
Q ss_pred EEEEEEEeecCCCCC-----------C--CCCCCcEEEEEEe--CCceeeecccccCCCCCccccEEEEEEe--------
Q 008910 450 LSVTVILAENLPASD-----------L--MGKADPYVVLTMK--KSETRNKTRVVNDCLNPIWNQTFDFVVE-------- 506 (549)
Q Consensus 450 L~v~v~~a~~L~~~~-----------~--~g~~dpyv~v~~~--~~~~~~kT~~~~~t~nP~wne~f~f~v~-------- 506 (549)
|.|.|++|.+|.... . .--.|+||++.+. .+.+..+|+++.++-.|.|+..++|+|+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888886421 0 1115899999863 3456789999999999999999999986
Q ss_pred c-------CCCCeEEEEEEECCCCC----------Cc-eeEEEEEeccccccccccceecC
Q 008910 507 D-------GLHDMLIAEVWDHDTFG----------KR-YLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 507 ~-------~~~~~l~i~V~d~~~~~----------~d-~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
. .....+.++||+....+ +| .||.+.|++.+++.+.+....||
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~ 141 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY 141 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence 1 13347999999865321 35 79999999999999999999987
No 237
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=4.8e-06 Score=79.68 Aligned_cols=104 Identities=24% Similarity=0.347 Sum_probs=81.8
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEEEC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDD 335 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~d~ 335 (549)
....|.|+++.|..|..+|.+|.+|||+..++.++-+. +++|.+.+++.||+||++|.|.+.. .....+.+.|||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 45778999999999999999999999999998754443 5778889999999999999988753 3456799999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeEEEEE
Q 008910 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLK 365 (549)
Q Consensus 336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~ 365 (549)
+..+..+++|-+...+ ...+....+|..
T Consensus 311 ~~G~s~d~~GG~~~g~--~rr~~v~~h~gr 338 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGG--YRRGEVHKHWGR 338 (362)
T ss_pred CCCcCccCCCcccccc--cccchhhcCccc
Confidence 9887888998765443 234444455543
No 238
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.00 E-value=5.1e-06 Score=63.77 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=70.8
Q ss_pred EEEEEEcccccccCCCC-CCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEEECCCCCCC
Q 008910 265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDEGIQSS 341 (549)
Q Consensus 265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~d~~~~~~d 341 (549)
.|+|+.|++|.-....| .+.-|++--+.-.....+||++.++..||+|+|+|.|.+.. ...-.|-|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 58899999997543322 34456665554223446889999999999999999998753 345578899998 44678
Q ss_pred ceeEEEEEECcccCCCceeEEEEE
Q 008910 342 ELIGCAQVRLCELEPGKVKDVWLK 365 (549)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~ 365 (549)
+.||.|.+.++++-+. ..++|..
T Consensus 80 e~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHH-Hhhhhhc
Confidence 9999999999886443 3456654
No 239
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.97 E-value=3.3e-05 Score=80.23 Aligned_cols=227 Identities=15% Similarity=0.244 Sum_probs=153.8
Q ss_pred CCCCceecCCC-------cchHHHHHHHHHHhHH------HHHHHHHHHHHhHHHHHhhcCCC-CcceEEEEEEecCCCC
Q 008910 58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPY------VNEAASELIKSSVEPVLEQYRPF-ILSSLKFSKFTLGTVA 123 (549)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~------~~~~~~~~~~~~~~~~l~~~~p~-~~~~i~~~~~~lG~~~ 123 (549)
..|.|+..... -.|-.+|.++..++.- +..++-+.+...+...+....-+ .+..+.+.++-+|.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 46778765332 2355566777766652 22233344444455555544333 7899999999999999
Q ss_pred ceeeeEEEEeCC-------------------------CCeEEEEEEEEEecCceEEEEEEeeeceeeeEEEEEEEEEEEE
Q 008910 124 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178 (549)
Q Consensus 124 P~i~~i~~~~~~-------------------------~~~~~le~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~ 178 (549)
|.+++.+++.-+ -..+.+=+|+.|.|+.--++++....+..-.+.|+..+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998621 1234566889999987666666666666667889999999999
Q ss_pred EEEeecCCCCCCceeeEEEEecccceeeEEEEE--cccCcccCcchHHHHHHHHHHHhhccccccceeec--cCCC----
Q 008910 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILP---- 250 (549)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~~f~~~p~l~f~~~~--~g~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~i--p~~~---- 250 (549)
|+.+. .-|+- .++++|...|.+...++. +|..+-. .+.+.+.+.++.++.+..+||++..- |.-.
T Consensus 241 r~~~~----r~py~-hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPYH-HWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccce-eeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99886 55654 489999999976554432 3322211 13456788889999999999997542 2211
Q ss_pred ----CCCcccccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEee
Q 008910 251 ----GDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP 293 (549)
Q Consensus 251 ----~~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 293 (549)
...+.+...+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 11122334578999999999988754 457788899888763
No 240
>PLN02964 phosphatidylserine decarboxylase
Probab=97.92 E-value=1.7e-05 Score=85.13 Aligned_cols=87 Identities=17% Similarity=0.371 Sum_probs=73.4
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEE-EEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAV-LFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~-v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 338 (549)
-.|+..+++++|+ ++ ..|+|.. ++++ .+++||.+.++|+||+||+...|.+.........+.|||.+.+
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 4699999999998 43 3588754 4455 8899999999999999999999999866555679999999999
Q ss_pred CCCceeEEEEEECcccCC
Q 008910 339 QSSELIGCAQVRLCELEP 356 (549)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~ 356 (549)
+.++++|.|++++.++..
T Consensus 122 s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CHHHhhhheeecHhhccH
Confidence 999999999998877643
No 241
>PLN02352 phospholipase D epsilon
Probab=97.87 E-value=5e-05 Score=82.23 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=71.6
Q ss_pred cccEEEEEEEEeecCCCC----CCC-CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEEC
Q 008910 446 IRGVLSVTVILAENLPAS----DLM-GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH 520 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~----~~~-g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~ 520 (549)
.-|.|.++|.+|+-+... ... ...||||.|.+++ .+..|| .+..||.|||.|...|.......++|.|+|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence 458999999999843221 111 1139999999986 456677 456699999999999987665579999998
Q ss_pred CCCCCceeEEEEEeccccccccccceecC
Q 008910 521 DTFGKRYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 521 ~~~~~d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+..+||++.|++.+++..+....+||
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~ 108 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFF 108 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEE
Confidence 35699999999999987644455543
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.73 E-value=0.0034 Score=62.67 Aligned_cols=258 Identities=12% Similarity=0.116 Sum_probs=148.4
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec-------CCCCEEEEEEEECC
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE 336 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~v~d~~ 336 (549)
+.|.|++|++.+... ...-.+..++. +....|..+..+..|.||.+..+.+.. .....+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998652 23345666665 778889988999999999988888742 24568999999988
Q ss_pred -CCCCCceeEEEEEECccc---CCC--ceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCccc--------CCCC
Q 008910 337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFT--------NPFA 402 (549)
Q Consensus 337 -~~~~d~~lG~~~v~l~~l---~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~--------~~~~ 402 (549)
..+..+.+|.+.++|+.+ ..+ .....|++|..... +-.+..-+|.+.+........+... .|..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~ 153 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR 153 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence 556778999999999998 555 56789999975421 1223345677777765433321100 0111
Q ss_pred CCCCcchHHHHhhcccc-cccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCC----C--CCCCCcEEEE
Q 008910 403 PNFSMTSLEKVLTNGEK-ALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASD----L--MGKADPYVVL 475 (549)
Q Consensus 403 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~----~--~g~~dpyv~v 475 (549)
++. .......+....- .......|.. .-.....-...-.|.|++..|+||...- . .+...-|...
T Consensus 154 ~~~-~~~~~~~~~~~~l~~~l~~~eg~l-------QIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Y 225 (340)
T PF12416_consen 154 QGH-VPPPNSLLSPATLIPVLLEDEGLL-------QIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYY 225 (340)
T ss_pred cCC-CcccccccCccceeEEEccCCceE-------eeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEE
Confidence 110 0000000000000 0000000000 0000000134578899999999987551 1 1123334444
Q ss_pred EEeCCceeeecccccCCCCCccc-cEEE-EEEecC---------CCCeEEEEEEECCCCCCceeEEEEEeccccccccc
Q 008910 476 TMKKSETRNKTRVVNDCLNPIWN-QTFD-FVVEDG---------LHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 476 ~~~~~~~~~kT~~~~~t~nP~wn-e~f~-f~v~~~---------~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~ 543 (549)
.+-+ ....|...+...+|.|. +.-. +.++.. ....|.|.++..+ ..||.+.+++..++...+
T Consensus 226 sllG--n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g~----~~Lg~~~v~l~~Ll~~~~ 298 (340)
T PF12416_consen 226 SLLG--NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCGN----QSLGSTSVPLQPLLPKDS 298 (340)
T ss_pred EecC--cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeCC----cEEEEEEEEhhhccCCCc
Confidence 4544 23344555566778765 2333 555421 2246788877643 379999999999976543
No 243
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.53 E-value=0.00019 Score=59.68 Aligned_cols=103 Identities=17% Similarity=0.374 Sum_probs=73.2
Q ss_pred EEEEEEEcccccccC---------C--C--CCCCcEEEEEEee-CCCCeEEeeeeCCCCCCeeccEEEEEEe--------
Q 008910 264 LEVKLVQAKGLTNKD---------L--I--GKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE-------- 321 (549)
Q Consensus 264 L~V~v~~a~~L~~~d---------~--~--g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~w~e~f~f~v~-------- 321 (549)
|.|.|++|.+|.... + . -.-++|+++.+.- .+++..+|+++.++-.|.|+.+++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888876421 0 0 1247899998642 2355688999999999999999999864
Q ss_pred c-------CCCCEEEEEEEECCCC----------CCCceeEEEEEECcccCC-CceeEEEEEc
Q 008910 322 D-------ESTQHLVVRIYDDEGI----------QSSELIGCAQVRLCELEP-GKVKDVWLKL 366 (549)
Q Consensus 322 ~-------~~~~~L~i~v~d~~~~----------~~d~~lG~~~v~l~~l~~-~~~~~~w~~L 366 (549)
. .+...+.++||+.... .+|-+||.+.||+.+|.. ......|+++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1345789999997532 346689999999999753 3456778763
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.38 E-value=0.00022 Score=76.75 Aligned_cols=89 Identities=13% Similarity=0.255 Sum_probs=72.1
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEE-EEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC
Q 008910 445 IIRGVLSVTVILAENLPASDLMGKADPYVV-LTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~-v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~ 523 (549)
.-.|+..+++++|+ ++ ..|+|.. +++|. +.+||.+.++|.||+||+...|.+........++.|||.+.+
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~--~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGE--QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEecc--eeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 45799999999997 22 2488665 55565 899999999999999999999998755445579999999998
Q ss_pred CC-ceeEEEEEecccccccc
Q 008910 524 GK-RYLSRYFQNRKTWLHDG 542 (549)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~ 542 (549)
+. +++|.|.+++.++..+.
T Consensus 122 s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CHHHhhhheeecHhhccHHH
Confidence 87 69999999888876654
No 245
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.38 E-value=0.00041 Score=53.51 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=61.7
Q ss_pred EEEEEeecCCCCCCCCC-CCcEEEEEEe-CCceeeecccccCCCCCccccEEEEEEe--cCCCCeEEEEEEECCCCC-Cc
Q 008910 452 VTVILAENLPASDLMGK-ADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFG-KR 526 (549)
Q Consensus 452 v~v~~a~~L~~~~~~g~-~dpyv~v~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~l~i~V~d~~~~~-~d 526 (549)
+++.+|++|.-...-|. +.-|++--+. .+....||.......||+|+|+|.|.+. ....-.|.++|+. ... +.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 67889999976544332 3346553332 2345788998889999999999999976 3344578999987 333 46
Q ss_pred eeEEEEEecccc
Q 008910 527 YLSRYFQNRKTW 538 (549)
Q Consensus 527 ~lG~~~i~l~~l 538 (549)
.||.|.++++++
T Consensus 81 ~iG~~sL~l~s~ 92 (103)
T cd08684 81 TIGECSLSLRTL 92 (103)
T ss_pred eeeEEEeecccC
Confidence 999999999976
No 246
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00016 Score=70.61 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=78.7
Q ss_pred ccccEEEEEEEEeecCCCCCCCC-CCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEE-
Q 008910 445 IIRGVLSVTVILAENLPASDLMG-KADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD- 519 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g-~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d- 519 (549)
...|.+.|.|++|++|..+...+ .++|||+|++-. ...+.+|+...+|++|.|.+...|.-. +....|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 45789999999999998776433 589999999832 224678888899999988887777765 456789999994
Q ss_pred CCCCCC-ceeEEEEEeccccccccccceecC
Q 008910 520 HDTFGK-RYLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+..... .|+|.+++-++++--...-.+.||
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwy 375 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWY 375 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeee
Confidence 444444 499999999998855554555554
No 247
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.05 E-value=0.00044 Score=68.26 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=89.9
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecC-----------CCCE
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQH 327 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-----------~~~~ 327 (549)
.-.|.+.|+++.+++........|-|+++.+. .+..++.+|.++++|.+|.|+|.|.+.+... ....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 34566777777776643322345778888764 2345678899999999999999999988652 1235
Q ss_pred EEEEEEECCCC-CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 328 LVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 328 L~i~v~d~~~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
+.|++|+...+ .+|.++|.|.+.|.-|...-.....++|.. ......|.|.+.+...
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence 89999998764 568899999999988876655666677742 2345678998888774
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.00048 Score=67.44 Aligned_cols=110 Identities=24% Similarity=0.379 Sum_probs=84.6
Q ss_pred CceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEE-
Q 008910 259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD- 334 (549)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d- 334 (549)
...|.|.|.|++|++|..+... ..++|||++++.+.+. -+.+|+...+|.+|.+.+...|.-. +....|.+.||.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 4679999999999999876533 3689999999984332 2467888888998888776666543 345689999984
Q ss_pred CCCCCCCceeEEEEEECcccCCCc-eeEEEEEcccc
Q 008910 335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKD 369 (549)
Q Consensus 335 ~~~~~~d~~lG~~~v~l~~l~~~~-~~~~w~~L~~~ 369 (549)
+.+..++.|+|.+.+-+.+|.... ....||+|...
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 566667889999999999987655 67899998753
No 249
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.63 E-value=0.029 Score=49.20 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=86.6
Q ss_pred ceeEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC-------------
Q 008910 260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES------------- 324 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~------------- 324 (549)
..-.|.++|..++-....-. .+..+.-..+.+. .++|+++|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 34678899988875442211 1344444444443 3489999999999999999999999986432
Q ss_pred CCEEEEEEEECCCCCCCceeEEEEEECcccCCCcee--EEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910 325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (549)
Q Consensus 325 ~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (549)
.+.+.+.|.--|..+...++|.-.+.-+.+...... ..-..|.... ...+...|-|.+++...|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecC
Confidence 346778888777766668999998888876544333 3333332211 1123578999999999874
No 250
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.53 E-value=0.02 Score=51.80 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=68.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEEC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH 520 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~ 520 (549)
..+.|+|++++++... ....+-||++.+-++.+ ...|+.+..+.++.|||.++|++. + |.+..|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4589999999999862 23356677776522112 234555444567999999999864 2 4667999999986
Q ss_pred CCCC----------------C-ceeEEEEEeccc---cccccccceecC
Q 008910 521 DTFG----------------K-RYLSRYFQNRKT---WLHDGSEALRLF 549 (549)
Q Consensus 521 ~~~~----------------~-d~lG~~~i~l~~---l~~~~~~~~~~~ 549 (549)
.... . ..||.+.+.+-+ .+..|.+.+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW 134 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMW 134 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEec
Confidence 4321 1 379999888766 466777777665
No 251
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.38 E-value=0.028 Score=49.96 Aligned_cols=98 Identities=21% Similarity=0.191 Sum_probs=67.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEEC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH 520 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~ 520 (549)
..+.|+|++++++...+ .+|-||++.+-++.+ ...|..+.. .++.|||-.+|++. + |....|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999988643 357888887632222 123443333 67999999999875 2 4667999999986
Q ss_pred CCCC---C--ceeEEEEEeccc---cccccccceecC
Q 008910 521 DTFG---K--RYLSRYFQNRKT---WLHDGSEALRLF 549 (549)
Q Consensus 521 ~~~~---~--d~lG~~~i~l~~---l~~~~~~~~~~~ 549 (549)
.... + -.+|.+.+.+-+ .+..|.+.+.+|
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW 120 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLW 120 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEE
Confidence 5421 2 269999998876 366777776654
No 252
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.91 E-value=0.063 Score=47.84 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=67.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--eCC--ceeeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEEC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTM--KKS--ETRNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH 520 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~--~~~--~~~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~ 520 (549)
..+.|.+....+....+ ....+-||.+.+ |++ .....|.......++.|||..+|++. + |.+..|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45778888888876521 223456777765 321 11234443333468999999999864 2 4667999999997
Q ss_pred CCCC--C-ceeEEEEEecccc---ccccccceecC
Q 008910 521 DTFG--K-RYLSRYFQNRKTW---LHDGSEALRLF 549 (549)
Q Consensus 521 ~~~~--~-d~lG~~~i~l~~l---~~~~~~~~~~~ 549 (549)
...+ + ..||.+.+++-+. +..|.+.+.+|
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW 121 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLW 121 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcccCcEecCCEEEecc
Confidence 7654 2 4899999988764 66777777665
No 253
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.67 E-value=0.73 Score=40.17 Aligned_cols=122 Identities=13% Similarity=0.200 Sum_probs=75.9
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeee-CCCCCCeeccEEEEEEec--------CCCCEEEEE
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED--------ESTQHLVVR 331 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~w~e~f~f~v~~--------~~~~~L~i~ 331 (549)
.-.+.|++++..+++. ....-|++...+.......+|+.. ..+-.-.|||.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3467888899988875 122234444333111102344332 345567999999887641 123468899
Q ss_pred EEECCCCCCCceeEEEEEECcccCCC--ceeEEEEEccccccccCCCceeeEEEEEEEEeecc
Q 008910 332 IYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (549)
Q Consensus 332 v~d~~~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (549)
|+.....++...+|.+.++|.+.... .....-+.|.+ .......|++++.+.+..
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR 138 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence 99885433446899999999998763 44555666642 235567889998887643
No 254
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.54 E-value=0.065 Score=47.75 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=57.3
Q ss_pred CCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe---cCCCCeEEEEEEECCCCCC-ceeEEEEEeccc--
Q 008910 468 KADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-RYLSRYFQNRKT-- 537 (549)
Q Consensus 468 ~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~-- 537 (549)
.+|-||.+.+-.+.+ ...|..+.-+..+.|||-.+|++. -|.+..|.|+||+....++ ..+|.+.+++-+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~ 108 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKD 108 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCC
Confidence 467788877632222 234555555667889999999975 2466799999999876554 489999998876
Q ss_pred -cccccccceecC
Q 008910 538 -WLHDGSEALRLF 549 (549)
Q Consensus 538 -l~~~~~~~~~~~ 549 (549)
.+..|.+.+.+|
T Consensus 109 g~Lr~G~~~l~lw 121 (159)
T cd08397 109 GTLRRGRQKLRVW 121 (159)
T ss_pred CcEecCCEEEEEE
Confidence 366777766654
No 255
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.52 E-value=0.0078 Score=59.76 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=72.0
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCCCCccccEEEEEEecCC-----------CC
Q 008910 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-----------HD 511 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-----------~~ 511 (549)
....|.+.|.++.+++...+.-..|.|+++.+- ....+.+|.+++.|.+|.|+|.|...+.... ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345678888899988876544445789998873 2346789999999999999999999987521 12
Q ss_pred eEEEEEEECCCCCC-c-eeEEEEEecccc
Q 008910 512 MLIAEVWDHDTFGK-R-YLSRYFQNRKTW 538 (549)
Q Consensus 512 ~l~i~V~d~~~~~~-d-~lG~~~i~l~~l 538 (549)
.+.|+|+++..+.+ | ++|.+.+.+.-+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~L 473 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEIL 473 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhh
Confidence 58999999987654 5 999999998766
No 256
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.48 E-value=0.073 Score=48.20 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=70.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeeccccc----CCCCCccccEEEEEEe---cCCCCeEEE
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVN----DCLNPIWNQTFDFVVE---DGLHDMLIA 515 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~----~t~nP~wne~f~f~v~---~~~~~~l~i 515 (549)
...+.|+|.++.+++........|-|+.+.+-.+.+ ...|+... ....+.|||-.+|.+. -|.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 356899999999999876544567888887632222 12333211 1235779999999874 246679999
Q ss_pred EEEECCCCC---------C-ceeEEEEEecccc---ccccccceecC
Q 008910 516 EVWDHDTFG---------K-RYLSRYFQNRKTW---LHDGSEALRLF 549 (549)
Q Consensus 516 ~V~d~~~~~---------~-d~lG~~~i~l~~l---~~~~~~~~~~~ 549 (549)
.+|+....+ + ..||.+.+.+-+. +..|.+.+.+|
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW 133 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLW 133 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEec
Confidence 999866543 2 4899999988764 66777777665
No 257
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.34 E-value=0.093 Score=46.05 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=74.6
Q ss_pred cccEEEEEEEEeecCCCCCCC--CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC-------------C
Q 008910 446 IRGVLSVTVILAENLPASDLM--GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-------------H 510 (549)
Q Consensus 446 ~~g~L~v~v~~a~~L~~~~~~--g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-------------~ 510 (549)
....|++.|..++-+...-.. +..+.-..+.+.-..++++|+.+..+++|.|+|.|-|.+.... .
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 457899999998876543221 4455556666544459999999999999999999999987431 3
Q ss_pred CeEEEEEEECCCCCC-ceeEEEEEecccccccccc
Q 008910 511 DMLIAEVWDHDTFGK-RYLSRYFQNRKTWLHDGSE 544 (549)
Q Consensus 511 ~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~ 544 (549)
+.|++-|...+..++ .++|...++...++..+..
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~ 121 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG 121 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccCCC
Confidence 478888888777665 5999999999988877654
No 258
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.02 E-value=0.18 Score=45.71 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=62.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce---eeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEECC
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET---RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHD 521 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~---~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~~ 521 (549)
..++|+|+++.+ +..+......-||++.+-.+.. ..+|.....+.++.|||-++|++. + |....|.|.||+..
T Consensus 10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 457788888873 3332222233566665422112 234555555678999999999875 2 36679999999852
Q ss_pred CC---------------CC-c-eeEEEEEeccc---cccccccceecC
Q 008910 522 TF---------------GK-R-YLSRYFQNRKT---WLHDGSEALRLF 549 (549)
Q Consensus 522 ~~---------------~~-d-~lG~~~i~l~~---l~~~~~~~~~~~ 549 (549)
.. ++ + .||.+.+.+-+ .+.+|.+.+.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W 136 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHMW 136 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEEe
Confidence 21 11 2 68889887766 366777776654
No 259
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.86 E-value=0.061 Score=58.50 Aligned_cols=90 Identities=26% Similarity=0.478 Sum_probs=67.6
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC----CeEEeeee-CCCCCCeeccE-EEEE-EecCCCCEEEEEEE
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVRIY 333 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~~~-~~t~nP~w~e~-f~f~-v~~~~~~~L~i~v~ 333 (549)
.+.+.|+|+++.-|..++. ..||.+.+-..+. +.++|+++ .++.||+|+|+ |.|. |.-+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 5788999999999987653 3799998853222 35778876 67899999974 6665 22334457999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCc
Q 008910 334 DDEGIQSSELIGCAQVRLCELEPGK 358 (549)
Q Consensus 334 d~~~~~~d~~lG~~~v~l~~l~~~~ 358 (549)
+... .+||+=.+|+..|..|-
T Consensus 778 eEgg----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccCC----ceeeeeccchhcccCcc
Confidence 9753 59999999999988764
No 260
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.81 E-value=0.059 Score=58.64 Aligned_cols=87 Identities=24% Similarity=0.352 Sum_probs=65.4
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-----Cceeeeccccc-CCCCCcccc-EEEEE-EecCCCCeEEEE
Q 008910 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVN-DCLNPIWNQ-TFDFV-VEDGLHDMLIAE 516 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~~kT~~~~-~t~nP~wne-~f~f~-v~~~~~~~l~i~ 516 (549)
...+.+.|+|+++.=|..++. ..||.|.+-+ ..+.++|+++. ++.||+|+| .|.|. |--|.-..|.|.
T Consensus 700 vIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 457889999999998876543 4799999843 22467888877 568999996 47776 333455689999
Q ss_pred EEECCCCCCceeEEEEEecccc
Q 008910 517 VWDHDTFGKRYLSRYFQNRKTW 538 (549)
Q Consensus 517 V~d~~~~~~d~lG~~~i~l~~l 538 (549)
||++.. .+||+=.++++.+
T Consensus 776 vyeEgg---K~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 776 VYEEGG---KFIGQRILPVDGL 794 (1189)
T ss_pred eeccCC---ceeeeeccchhcc
Confidence 998764 4899888888876
No 261
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.42 E-value=1.1 Score=39.93 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=59.5
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC---eEEeeeeCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEEC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 335 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~w~e~f~f~v~--~~-~~~~L~i~v~d~ 335 (549)
..++|+|++++++.-.+ .+|-|+.+.+-.++.. ...|+.+.. .++.|||...|.+. +. ....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46789999999887543 4688888876532211 123443333 67999999888764 32 345899999997
Q ss_pred CCCC----CCceeEEEEEECcc
Q 008910 336 EGIQ----SSELIGCAQVRLCE 353 (549)
Q Consensus 336 ~~~~----~d~~lG~~~v~l~~ 353 (549)
.... ....+|.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 6421 22469999999865
No 262
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.71 E-value=0.43 Score=43.21 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=57.7
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEEC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDD 335 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 335 (549)
..++|+|+.+.++.-.+ ...+-|+.+.+-.++. ....|+.+..+.++.|||...|++. + +....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 46789999999988522 3456677765542211 1234555554567999999888764 3 2445899999997
Q ss_pred CCCC----------------CCceeEEEEEECcc
Q 008910 336 EGIQ----------------SSELIGCAQVRLCE 353 (549)
Q Consensus 336 ~~~~----------------~d~~lG~~~v~l~~ 353 (549)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5422 13467777776643
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.37 E-value=0.59 Score=41.56 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=58.7
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEEC
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDD 335 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 335 (549)
..++|++....++...+ ....+-|+.+.+-.++. ....|.......++.|||...|.+. + +....|.|.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35677788777765411 23456677776642221 1233443333468999999888754 3 2345899999998
Q ss_pred CCCC--CCceeEEEEEECcc
Q 008910 336 EGIQ--SSELIGCAQVRLCE 353 (549)
Q Consensus 336 ~~~~--~d~~lG~~~v~l~~ 353 (549)
+..+ .+..||.+.++|-+
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ecCCCCcceEEEEEeEEeEc
Confidence 7543 46799999999865
No 264
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.80 E-value=0.26 Score=47.51 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=55.9
Q ss_pred ceeEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910 260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 337 (549)
..|+|.+++..+++|.-... .-.-+-||++... .....+|.+.....-=.|.|+|+.++.+. ..+.+-||.++.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~p 124 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWPP 124 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecCc
Confidence 56999999999999975332 3346889998875 22234454444444458999999888743 468888999887
Q ss_pred CCCCce
Q 008910 338 IQSSEL 343 (549)
Q Consensus 338 ~~~d~~ 343 (549)
-.++++
T Consensus 125 q~RHKL 130 (442)
T KOG1452|consen 125 QRRHKL 130 (442)
T ss_pred hhhccc
Confidence 656654
No 265
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.40 E-value=1.5 Score=34.55 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=57.7
Q ss_pred CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCcee
Q 008910 281 GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360 (549)
Q Consensus 281 g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~ 360 (549)
|.++-.+.+.+. ...+.+|.... -.+..|++.|.+.+.. ...|+|.||=+|- ..+-|...+.|++...
T Consensus 7 ~~~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~---- 74 (98)
T cd08687 7 GCSEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred cccceEEEEEEc--CeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----
Confidence 346777888876 34566676543 3578999999999863 5689999998764 3466777777776322
Q ss_pred EEEEEccccccccCCCceeeEEEEEEEE
Q 008910 361 DVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (549)
Q Consensus 361 ~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 388 (549)
..-.+ -.+.|.+..+++|
T Consensus 75 ~~~~~----------lepqg~l~~ev~f 92 (98)
T cd08687 75 EVQLD----------MEPQLCLVAELTF 92 (98)
T ss_pred cceec----------cccccEEEEEEEe
Confidence 11122 2456888887777
No 266
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=92.27 E-value=0.83 Score=45.86 Aligned_cols=95 Identities=9% Similarity=0.163 Sum_probs=72.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEec-------CCCCeEEEEEEECCC
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-------GLHDMLIAEVWDHDT 522 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-------~~~~~l~i~V~d~~~ 522 (549)
+.|.|.+|+|++... ...-.+..++++ ....|..+..+..|.||....+.+.. ..+..|++++|--+.
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 678999999998763 234577888887 67778888899999999999998862 345689999998873
Q ss_pred -CC-CceeEEEEEecccc---ccc-cccceecC
Q 008910 523 -FG-KRYLSRYFQNRKTW---LHD-GSEALRLF 549 (549)
Q Consensus 523 -~~-~d~lG~~~i~l~~l---~~~-~~~~~~~~ 549 (549)
.+ +..||.+.+++... ..+ .....+||
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~ 109 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWY 109 (340)
T ss_pred CCCcceeccEEEEEccccccccccccccCCCee
Confidence 23 47999999999988 222 23566665
No 267
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.13 E-value=1.5 Score=38.16 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=60.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce-eeeccccc-CCCCCccccEEEEEEec---C-----CCCeEEEE
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET-RNKTRVVN-DCLNPIWNQTFDFVVED---G-----LHDMLIAE 516 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~-~~kT~~~~-~t~nP~wne~f~f~v~~---~-----~~~~l~i~ 516 (549)
...+.+.|++..+++.. ...-||+...+.... ..+|.... .+..-.|||.|.+.+.- . ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 35688999999999862 123355554443221 23333332 44567899999998751 1 23368899
Q ss_pred EEECCCCCCc-eeEEEEEecccccccc
Q 008910 517 VWDHDTFGKR-YLSRYFQNRKTWLHDG 542 (549)
Q Consensus 517 V~d~~~~~~d-~lG~~~i~l~~l~~~~ 542 (549)
|+.....++. .+|.+.|+|.++....
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~ 108 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANED 108 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcC
Confidence 9887654554 8999999999998853
No 268
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.11 E-value=1.6 Score=39.92 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=48.2
Q ss_pred eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCCC---CceeEEEEEeccc----cccccccceecC
Q 008910 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG---KRYLSRYFQNRKT----WLHDGSEALRLF 549 (549)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~---~d~lG~~~i~l~~----l~~~~~~~~~~~ 549 (549)
..++|.+.+.+.+|.|+|++.+.++.. ...-|.+++++..... +..+|-+.++|-+ .+.+|.+.+-+|
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vy 129 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVY 129 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEE
Confidence 367888888999999999999988633 3446778777643322 2479999998843 467777665443
No 269
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.05 E-value=0.63 Score=41.48 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=50.9
Q ss_pred CCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEECCCCCCCceeEEEEEECcc
Q 008910 281 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSSELIGCAQVRLCE 353 (549)
Q Consensus 281 g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~ 353 (549)
..+|-||.+.+-.++. ....|+.+.-+..+.|||...|++. + +....|.|.||+.+..++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 4567788777653221 1234555555567899999888874 3 2345899999998865567799999999865
No 270
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.79 E-value=0.64 Score=42.04 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=61.1
Q ss_pred eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC---eEEeeeeC----CCCCCeeccEEEEEEe--c-CCCCEEEEE
Q 008910 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR 331 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~----~t~nP~w~e~f~f~v~--~-~~~~~L~i~ 331 (549)
..+.|+|.++.+++........|-|+.+.+-.++.. ...|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 567899999999987664456788888877532211 22333211 1235779999888764 2 244589999
Q ss_pred EEECCCCC---------CCceeEEEEEECcc
Q 008910 332 IYDDEGIQ---------SSELIGCAQVRLCE 353 (549)
Q Consensus 332 v~d~~~~~---------~d~~lG~~~v~l~~ 353 (549)
+|+....+ .+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99976543 35689998888854
No 271
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.77 E-value=0.55 Score=41.02 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=44.2
Q ss_pred ecccccCC-CCCccccEEEEEEe---cCCCCeEEEEEEECCCCCC-----ceeEEEEEecccc---ccccccceec
Q 008910 485 KTRVVNDC-LNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-----RYLSRYFQNRKTW---LHDGSEALRL 548 (549)
Q Consensus 485 kT~~~~~t-~nP~wne~f~f~v~---~~~~~~l~i~V~d~~~~~~-----d~lG~~~i~l~~l---~~~~~~~~~~ 548 (549)
.|.....+ .++.|||.++|++. -|.+..|.|+||..+.... ..||.+.+.+-+. +..|...+.+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~~G~~~L~l 98 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLRQGPQKLSL 98 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBEEEEEEEE-
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCcccCCCEEEEE
Confidence 56555555 79999999999975 2466799999998766443 4899999988764 4556655554
No 272
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.99 E-value=3 Score=38.06 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=40.9
Q ss_pred CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCC--CceeEEEEEECc
Q 008910 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS--SELIGCAQVRLC 352 (549)
Q Consensus 297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~--d~~lG~~~v~l~ 352 (549)
..++|.+...+.+|.|+|++.+.+... ....|.|.+++.....+ ...+|.+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 357888899999999999998887643 45589998887553211 246787777773
No 273
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.58 E-value=2.8 Score=38.39 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=50.0
Q ss_pred eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC--C---CceeEEEEEeccc----cccccccceecC
Q 008910 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF--G---KRYLSRYFQNRKT----WLHDGSEALRLF 549 (549)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~--~---~d~lG~~~i~l~~----l~~~~~~~~~~~ 549 (549)
..++|.+.+...+|.|+|++.+.++.. ...-|.+++++.... . ...+|-+.++|-. .+.+|.+.+.+|
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vY 131 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVY 131 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEE
Confidence 467888888899999999999988633 445788888764321 1 1369999998862 578888777665
No 274
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.79 E-value=4.6 Score=36.99 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=41.1
Q ss_pred CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC-CC---CceeEEEEEECc
Q 008910 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-QS---SELIGCAQVRLC 352 (549)
Q Consensus 297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-~~---d~~lG~~~v~l~ 352 (549)
..++|.+...+.+|.|+|++.+.+... ....|.|.+++.... .+ ...+|.+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 357888888999999999998887532 455899999886532 11 246788777774
No 275
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.53 E-value=2.9 Score=33.98 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=47.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe---cCCCCeEEEEEEECCC
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDT 522 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~~ 522 (549)
+.+.+...++.........++-||.+.+-++.+ ...|..+.....+.|||-.+|++. -|.+..|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 556777777776544333357788887632222 224554444556899999999865 3466799999998543
No 276
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=87.87 E-value=2.4 Score=33.39 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=45.4
Q ss_pred CCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEecccccc
Q 008910 469 ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLH 540 (549)
Q Consensus 469 ~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~ 540 (549)
.+..+.+.+++ .....|.-.. ..+..|++.|++.+. ....|+|.||-+|. +.+.|-..+.|++..+
T Consensus 9 ~eV~avLklDn-~~VgqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~--RslCav~~lrLEd~~~ 74 (98)
T cd08687 9 SEVSAVLKLDN-TVVGQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDW--RSLCAVKFLKLEDERH 74 (98)
T ss_pred cceEEEEEEcC-eEEeeccccc-cccccccceeEEEee--cccEEEEEEEEecc--hhhhhheeeEhhhhcc
Confidence 46677777765 2344555432 357889999999997 45689999997765 3466777777777433
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.63 E-value=3 Score=36.32 Aligned_cols=56 Identities=18% Similarity=0.390 Sum_probs=39.5
Q ss_pred EEeeeeCCC-CCCeeccEEEEEEe--c-CCCCEEEEEEEECCCCCCC----ceeEEEEEECccc
Q 008910 299 KKSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL 354 (549)
Q Consensus 299 ~kT~~~~~t-~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d----~~lG~~~v~l~~l 354 (549)
..|+...-+ .++.|||...|.+. + +....|.|.||+.+....+ ..||.+.++|-+-
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 355555544 79999999988874 3 3455899999998765544 6899999998653
No 278
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.05 E-value=2.1 Score=39.19 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=34.5
Q ss_pred CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCCC---ceeEEEEEECcc
Q 008910 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSS---ELIGCAQVRLCE 353 (549)
Q Consensus 297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d---~~lG~~~v~l~~ 353 (549)
..+.|.+...+.+|.|+|+|.+.+... ....|.|.+++.....+. ..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 357788888899999999999988654 345899999997643211 689999888865
No 279
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.66 E-value=4 Score=36.98 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=42.9
Q ss_pred EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC---eEEeeeeCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEECC
Q 008910 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE 336 (549)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~w~e~f~f~v~--~~-~~~~L~i~v~d~~ 336 (549)
.++|+|+++..+ ..+......-||++.+-. +++ ..+|....-+.++.|||...|.+. +. ....|.|.||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467788887633 222122233456554432 122 224555555678999998888764 32 3458999999974
No 280
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=85.48 E-value=16 Score=32.81 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=66.9
Q ss_pred CCCcEEEEEEeeCCCCeEEeeeeC--CCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCC--
Q 008910 282 KSDPYAVLFVRPLPEKTKKSKTIN--NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-- 357 (549)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~~~~--~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~-- 357 (549)
+..-|+++.+. ++.+.+|+... ....-.++|.|.+.+... .+.|.++||.... ..+.+|+.+.+|+-.....
T Consensus 36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~ 111 (168)
T PF15625_consen 36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTS 111 (168)
T ss_pred heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccccc
Confidence 34568888886 34556665542 334457789999999775 4589999999987 5789999999998654322
Q ss_pred ce--eEEEEEccccccc----------------cCCCceeeEEEEEEEEe
Q 008910 358 KV--KDVWLKLVKDLDV----------------QRDTKYRGQVHLELLYC 389 (549)
Q Consensus 358 ~~--~~~w~~L~~~~~~----------------~~~~~~~G~l~l~l~~~ 389 (549)
.. ...|+....+... ......+|.|.+++.|.
T Consensus 112 ~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~ 161 (168)
T PF15625_consen 112 TDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWA 161 (168)
T ss_pred ccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEe
Confidence 11 3445544332211 11123467888887775
No 281
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=84.65 E-value=2.4 Score=41.15 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=55.6
Q ss_pred ccccEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC
Q 008910 445 IIRGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 522 (549)
Q Consensus 445 ~~~g~L~v~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~ 522 (549)
...|+|.++++.+++|..... .-+.+-||.+.+.. +.+.+|.+......=.|.|.|+..+.+ ...+.+-||.++.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence 457999999999999976443 33468899998774 345556554444445688999888764 3578899998876
Q ss_pred CCC
Q 008910 523 FGK 525 (549)
Q Consensus 523 ~~~ 525 (549)
..+
T Consensus 125 q~R 127 (442)
T KOG1452|consen 125 QRR 127 (442)
T ss_pred hhh
Confidence 543
No 282
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=83.14 E-value=2.8 Score=46.62 Aligned_cols=107 Identities=12% Similarity=0.231 Sum_probs=77.7
Q ss_pred CCcEEEEEEeeCCCCeEEeeeeCCC-CCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeE
Q 008910 283 SDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361 (549)
Q Consensus 283 ~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~ 361 (549)
.++|+.+.+. .....+|..+.+. .+|.|.+.|......... .+.+.+-+.+..+-...+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g-~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKAG-YVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhcccccccccc-EEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 4889988886 2334556666666 799999999888776543 78888888887665789999999999998888888
Q ss_pred EEEEccccccccCCCceeeEEEEEEEEeecccC
Q 008910 362 VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (549)
Q Consensus 362 ~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (549)
.|+++...... .....-.+.+.+.|.++...
T Consensus 215 ~~~~Il~~d~~--~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDNDGK--PHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccCCc--cccCCcccceEEeeEeechh
Confidence 99988643321 11223356777888877654
No 283
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=79.91 E-value=9.2 Score=31.02 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=44.7
Q ss_pred EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC---eEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEECCC
Q 008910 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEG 337 (549)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~ 337 (549)
+.+.+...++..-......+|-|+.+.+-.++.. ...|+.+.-...+.|||...|++. + +....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4455666666554332233578888876532211 224554444556899999888764 2 244579999998653
No 284
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=78.79 E-value=8.7 Score=31.64 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=44.7
Q ss_pred CCeEEeeeeCCCCCCeeccEEEEEEecC-------CCCEEEEEEEECCCCCCCceeEEEEEECcccCCCc--eeEEEEEc
Q 008910 296 EKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK--VKDVWLKL 366 (549)
Q Consensus 296 ~~~~kT~~~~~t~nP~w~e~f~f~v~~~-------~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~--~~~~w~~L 366 (549)
-+.+.|.++. +.+|.+|-+-.|.|... .+..+.++++..-. ...+.+|.+.+++..+.+.. .......+
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l 87 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATL 87 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence 4566777766 88999999888887532 34578999998763 34689999999999986332 23334444
Q ss_pred cccccccCCCceeeEEEEEEEEe
Q 008910 367 VKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 367 ~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
.. ..+..-|.|...+...
T Consensus 88 ~g-----~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 88 VG-----VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -B-----SSS-TSEEEEEEEEEE
T ss_pred ec-----cCCCeEEEEEEEEEec
Confidence 32 2334678887776653
No 285
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=77.70 E-value=6.7 Score=35.86 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=34.0
Q ss_pred eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCCC--C--ceeEEEEEeccc
Q 008910 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K--RYLSRYFQNRKT 537 (549)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~--~--d~lG~~~i~l~~ 537 (549)
..+.|.+.+++.+|.|+|+|.+.++.. ...-|.+++++..... + ..+|.+.++|.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 466788888889999999999998754 3447888998855432 1 489999999877
No 286
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=77.50 E-value=28 Score=31.83 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=39.2
Q ss_pred CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC--C-------CCceeEEEEEECc
Q 008910 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI--Q-------SSELIGCAQVRLC 352 (549)
Q Consensus 297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~--~-------~d~~lG~~~v~l~ 352 (549)
....|.+...+.+|.|.|++.+.+.-. ....|.|..|+.+-. . ....+|.+-+||-
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 356788888899999999988877533 455899999986521 1 1235676666663
No 287
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=76.30 E-value=8.6 Score=34.94 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=38.0
Q ss_pred EEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC-----CCCceeEEEEEECc
Q 008910 299 KKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-----QSSELIGCAQVRLC 352 (549)
Q Consensus 299 ~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-----~~d~~lG~~~v~l~ 352 (549)
++|-+..+ .+|.|+|+|.+.+... ....|.|.+++.+.. .....+|.+.+||-
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 44444444 9999999999888543 355899999997632 23567888888875
No 288
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=75.34 E-value=14 Score=33.21 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=47.9
Q ss_pred CcEEEEEEeCCceeeeccccc--CCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEecccccc
Q 008910 470 DPYVVLTMKKSETRNKTRVVN--DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLH 540 (549)
Q Consensus 470 dpyv~v~~~~~~~~~kT~~~~--~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~ 540 (549)
.-|+++.+++ +...+|+... ....-.|||.|.+.+... -..|.++||.....++..|+++.+++-....
T Consensus 38 ~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 38 RYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred eEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 3478888776 2344554332 223345789999999764 4579999999887555699999998766533
No 289
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=74.27 E-value=11 Score=34.30 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=40.0
Q ss_pred CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCC------CceeEEEEEECc
Q 008910 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS------SELIGCAQVRLC 352 (549)
Q Consensus 297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~------d~~lG~~~v~l~ 352 (549)
....|.+...+.+|.|+|++.+.+.-. ....|.|..++.+-..+ ...+|.+-+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 357788889999999999998887643 44589999998553211 245777777763
No 290
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=72.56 E-value=1.2 Score=48.64 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHHhHHHHHH--HHHHHHHhHHHHHhhcC-CCCcceEEEEEEecCCCCceeeeEEEEeCC-CCeEEEEEE
Q 008910 69 QKLTWLNHHLEKLWPYVNEA--ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVAPQFTGVSIIEDG-GSGVTMELE 144 (549)
Q Consensus 69 E~~~WlN~~l~~~Wp~~~~~--~~~~~~~~~~~~l~~~~-p~~~~~i~~~~~~lG~~~P~i~~i~~~~~~-~~~~~le~~ 144 (549)
+.+-|||.++.++..-+.+. ..+..++.++.++...+ |+++..+-..+++-|+.||.|++-++.... .+..-++.|
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d 413 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID 413 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence 45889999999998766443 66788888888887765 779999999999999999999999998774 355568899
Q ss_pred EEEecCceEEEEE
Q 008910 145 MQWDANSSIILAI 157 (549)
Q Consensus 145 ~~~~~~~~i~l~~ 157 (549)
+.|.||..+.+..
T Consensus 414 i~y~~d~~~~i~~ 426 (795)
T KOG2238|consen 414 IEYRGDLTIIIET 426 (795)
T ss_pred eeecccccccccc
Confidence 9999987555554
No 291
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=70.95 E-value=14 Score=33.51 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=44.7
Q ss_pred eecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC-----C-CceeEEEEEeccc----cccccccceecC
Q 008910 484 NKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF-----G-KRYLSRYFQNRKT----WLHDGSEALRLF 549 (549)
Q Consensus 484 ~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~-----~-~d~lG~~~i~l~~----l~~~~~~~~~~~ 549 (549)
++|- +....+|.|+|++.+.++.. ...-|.+++++.... . ...+|-+.++|-+ ++.+|.+.+.+|
T Consensus 55 ~~sv-~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~ 131 (178)
T cd08679 55 YTSV-VYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVY 131 (178)
T ss_pred EEEE-EEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEE
Confidence 3444 44448999999999988633 345788899875422 1 2489999999987 456677666543
No 292
>PF15179 Myc_target_1: Myc target protein 1
Probab=62.66 E-value=1.6 Score=38.73 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=19.7
Q ss_pred CcchhhHHHHHHHHHhheeeeEeec
Q 008910 1 MGFFFGLVVGLVVGLGIIVGFVRSE 25 (549)
Q Consensus 1 ~~~~~g~~~~~l~g~~l~~~~~~~~ 25 (549)
|.|.+..++||++|.++|+++.|.-
T Consensus 23 laF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788999999999888777644
No 293
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.26 E-value=2.2 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHhheee
Q 008910 4 FFGLVVGLVVGLGIIVG 20 (549)
Q Consensus 4 ~~g~~~~~l~g~~l~~~ 20 (549)
+.|+++|+++|+++..+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 44555555555554333
No 294
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=58.43 E-value=13 Score=30.55 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=31.9
Q ss_pred eeeecccccCCCCCccccEEEEEEecC-------CCCeEEEEEEECCCCCCceeEEEEEeccccccccc
Q 008910 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG-------LHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGS 543 (549)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~-------~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~ 543 (549)
..+.|.++. ..+|.+|-+-.|.|... ....+.|+++......-..+|.+++++..+++..+
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC
Confidence 355677765 78999999988888632 34579999987652212589999999999986544
No 295
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=56.15 E-value=37 Score=31.03 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=45.2
Q ss_pred eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC--CC-----CC---ceeEEEEEeccc---cccccccce
Q 008910 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD--TF-----GK---RYLSRYFQNRKT---WLHDGSEAL 546 (549)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~--~~-----~~---d~lG~~~i~l~~---l~~~~~~~~ 546 (549)
....|.+..++.+|.|+|++.+.++-. ...-|.++.++.. .. .+ ..+|-+.++|-. .+..|.+.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~L 135 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTP 135 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEee
Confidence 466788888999999999988887633 3346788888753 11 11 369999999855 445555544
Q ss_pred e
Q 008910 547 R 547 (549)
Q Consensus 547 ~ 547 (549)
.
T Consensus 136 p 136 (185)
T cd08697 136 P 136 (185)
T ss_pred e
Confidence 4
No 296
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.32 E-value=11 Score=32.20 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHhheeeeE
Q 008910 4 FFGLVVGLVVGLGIIVGFV 22 (549)
Q Consensus 4 ~~g~~~~~l~g~~l~~~~~ 22 (549)
++||++|+++|.++.-++.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5778888888888765444
No 297
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.45 E-value=4.1 Score=44.04 Aligned_cols=81 Identities=10% Similarity=0.038 Sum_probs=48.6
Q ss_pred CCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCC-Ccee
Q 008910 282 KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVK 360 (549)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~-~~~~ 360 (549)
..|||+.+.+.. .+...+.+...+..|.|+++|...+.. ...+.+.|+.......+.+...+++-.+++.. ....
T Consensus 27 al~~y~~v~vk~--~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~ 102 (694)
T KOG0694|consen 27 ALQPYLAVELKV--KQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQ 102 (694)
T ss_pred hhhhhheeccce--eecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhh
Confidence 357888887752 222344457789999999999999764 44788888887644444433333333333321 1223
Q ss_pred EEEEEc
Q 008910 361 DVWLKL 366 (549)
Q Consensus 361 ~~w~~L 366 (549)
..|..+
T Consensus 103 ~~w~~~ 108 (694)
T KOG0694|consen 103 RLWVLI 108 (694)
T ss_pred hhcccc
Confidence 455554
No 298
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=50.05 E-value=8 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHhheeeeE
Q 008910 3 FFFGLVVGLVVGLGIIVGFV 22 (549)
Q Consensus 3 ~~~g~~~~~l~g~~l~~~~~ 22 (549)
|++|+++|.++|.++.+++.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 67888888888888777664
No 299
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=49.28 E-value=55 Score=29.73 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=39.7
Q ss_pred eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC----CC---ceeEEEEEeccc
Q 008910 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF----GK---RYLSRYFQNRKT 537 (549)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~----~~---d~lG~~~i~l~~ 537 (549)
....|.+..++.+|.|+|++...++-. ...-|.++.++-.-. ++ ..+|-+.++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 466788888999999999998888643 334677788763211 11 369998888764
No 300
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=44.68 E-value=10 Score=33.07 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=13.2
Q ss_pred cchhhHHHHHHHHHhheeeeE
Q 008910 2 GFFFGLVVGLVVGLGIIVGFV 22 (549)
Q Consensus 2 ~~~~g~~~~~l~g~~l~~~~~ 22 (549)
|.+.|+.+.+++|++++++|.
T Consensus 53 GvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEecccHHHHHHHHHhheeE
Confidence 666777667777766555443
No 301
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=42.72 E-value=8 Score=28.22 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHhheeeeEe
Q 008910 2 GFFFGLVVGLVVGLGIIVGFVR 23 (549)
Q Consensus 2 ~~~~g~~~~~l~g~~l~~~~~~ 23 (549)
|.+-|.++|+++.++|.++..+
T Consensus 13 avIaG~Vvgll~ailLIlf~iy 34 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIY 34 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677766666554443
No 302
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=40.96 E-value=18 Score=40.46 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=59.5
Q ss_pred ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (549)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 337 (549)
..|.+.+.+++|..+.. ...-||...+...+ .-+.+|.++.+|..|.||++|+..+. ..|.+++..++++.
T Consensus 757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~--~sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVI--ESQSSRLEKTEKST 829 (1112)
T ss_pred cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchh--hccccchhhhcccc
Confidence 46899999999998873 34568877664222 33577899999999999999988875 34566677776542
Q ss_pred ----------CCCCceeEEEEEECc
Q 008910 338 ----------IQSSELIGCAQVRLC 352 (549)
Q Consensus 338 ----------~~~d~~lG~~~v~l~ 352 (549)
...+...|+..+.+.
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred hHHHhhhccchhhcccccccccccC
Confidence 223445566555554
No 303
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=39.40 E-value=3.5e+02 Score=27.15 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=68.9
Q ss_pred eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCC--eeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP--IWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (549)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP--~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 338 (549)
.=.|-|.|.+..++.. ...-|+.+..+ ....+|..+.-+..- .-.+.....+.. ...+|++.+|-..-
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~G---r~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkL- 126 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTD---KYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKL- 126 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcC---ceEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccc-
Confidence 3457777777665542 33568888876 445555444322221 122322333332 34589999998765
Q ss_pred CCCceeEEEEEECcc-c-CCCceeEEEEEccccccccCCCceeeEEEEEEE
Q 008910 339 QSSELIGCAQVRLCE-L-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (549)
Q Consensus 339 ~~d~~lG~~~v~l~~-l-~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~ 387 (549)
.+..-||.+.+.+.. + ...-+...||.+.+ ++...+++.+++.
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k------DGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFK------DGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEec------CCceeeeEEEEeh
Confidence 456789999999875 3 34456789999854 5677788888763
No 304
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=39.03 E-value=1.7e+02 Score=25.67 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=48.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc-----eeeecccccCCCC--CccccEEEEEE--e-cCCCCeEEEE
Q 008910 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE-----TRNKTRVVNDCLN--PIWNQTFDFVV--E-DGLHDMLIAE 516 (549)
Q Consensus 447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----~~~kT~~~~~t~n--P~wne~f~f~v--~-~~~~~~l~i~ 516 (549)
.-.|.|.|.+.- |. |.....|||+.|++...+ ..+.|.+.....+ =.||...++.. . -+....+.++
T Consensus 12 ~t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE 88 (147)
T PF14186_consen 12 MTYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFE 88 (147)
T ss_dssp --EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEE
T ss_pred CceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEE
Confidence 356788877765 53 334457999999984321 2455665422211 22332222221 1 2245679999
Q ss_pred EEECCCCCCc--eeEEEEEeccccccccccceecC
Q 008910 517 VWDHDTFGKR--YLSRYFQNRKTWLHDGSEALRLF 549 (549)
Q Consensus 517 V~d~~~~~~d--~lG~~~i~l~~l~~~~~~~~~~~ 549 (549)
+.++....+. ..+.+.+.++++ ..|.-.+++|
T Consensus 89 ~kH~K~kk~k~S~kcw~fme~dei-~~g~~~lely 122 (147)
T PF14186_consen 89 FKHYKPKKKKTSTKCWAFMELDEI-KPGPVVLELY 122 (147)
T ss_dssp EEEEETTTTCEEEEEEEEEEGGG---SEEEEE--E
T ss_pred EEeeeccceeeeeeEEEEEEhhhc-cCCceeeehh
Confidence 9998776553 567778888776 4445555443
No 305
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.73 E-value=7.5 Score=32.76 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=13.6
Q ss_pred cchhhHHHHHHHHHhheeeeE
Q 008910 2 GFFFGLVVGLVVGLGIIVGFV 22 (549)
Q Consensus 2 ~~~~g~~~~~l~g~~l~~~~~ 22 (549)
|.++|..+|+++-++|.+++.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHH
Confidence 568999999955444444343
No 306
>PF14851 FAM176: FAM176 family
Probab=38.01 E-value=15 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHhheeeeEee
Q 008910 3 FFFGLVVGLVVGLGIIVGFVRS 24 (549)
Q Consensus 3 ~~~g~~~~~l~g~~l~~~~~~~ 24 (549)
|+.|+.+||++.||+++.-..+
T Consensus 26 Fv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhee
Confidence 5788999999999988765554
No 307
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=35.58 E-value=3.2e+02 Score=24.35 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=49.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeC--------Cce-eeecccccC-----CCCCccccEEEEEEecC--CC-Ce
Q 008910 450 LSVTVILAENLPASDLMGKADPYVVLTMKK--------SET-RNKTRVVND-----CLNPIWNQTFDFVVEDG--LH-DM 512 (549)
Q Consensus 450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~--------~~~-~~kT~~~~~-----t~nP~wne~f~f~v~~~--~~-~~ 512 (549)
+.-.|.+|.+... .+-||+-.+.. ... ...|.+.+. ...-.||..|++..... .. -.
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 4456788887743 35688877621 112 344544432 33466998888776532 21 38
Q ss_pred EEEEEEECCCCCCc-eeEEEEEec
Q 008910 513 LIAEVWDHDTFGKR-YLSRYFQNR 535 (549)
Q Consensus 513 l~i~V~d~~~~~~d-~lG~~~i~l 535 (549)
|.++||..|..+++ ..|-..+.+
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 99999999999885 666655444
No 308
>PRK11677 hypothetical protein; Provisional
Probab=35.43 E-value=37 Score=29.19 Aligned_cols=17 Identities=35% Similarity=0.639 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHhheee
Q 008910 4 FFGLVVGLVVGLGIIVG 20 (549)
Q Consensus 4 ~~g~~~~~l~g~~l~~~ 20 (549)
+.||++|+++|.++.-+
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45678888888776553
No 309
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=34.89 E-value=3.3e+02 Score=24.28 Aligned_cols=79 Identities=14% Similarity=0.263 Sum_probs=52.1
Q ss_pred EEEEcccccccCCCCCCCcEEEEEEee-------CCCC-eEEeeeeCC-----CCCCeeccEEEEEEecCC--C-CEEEE
Q 008910 267 KLVQAKGLTNKDLIGKSDPYAVLFVRP-------LPEK-TKKSKTINN-----DLNPIWNEHFEFIVEDES--T-QHLVV 330 (549)
Q Consensus 267 ~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~-~~kT~~~~~-----t~nP~w~e~f~f~v~~~~--~-~~L~i 330 (549)
.|.+|.+.. .++-||+..+.- .+.. ...|.+... +..-.||--|++...... . ..|.+
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 456676543 446788888752 1222 455555432 344688887766665332 2 47999
Q ss_pred EEEECCCCCCCceeEEEEEEC
Q 008910 331 RIYDDEGIQSSELIGCAQVRL 351 (549)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~v~l 351 (549)
+||..|..+++...|...+.|
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEe
Confidence 999999999999998877776
No 310
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=33.87 E-value=27 Score=26.48 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.0
Q ss_pred cchhhHHHHHHHHHhhee
Q 008910 2 GFFFGLVVGLVVGLGIIV 19 (549)
Q Consensus 2 ~~~~g~~~~~l~g~~l~~ 19 (549)
|+++|.++|.++|+++.=
T Consensus 4 g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 788889999999888755
No 311
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=33.16 E-value=27 Score=27.58 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCCCCCceecCCCcchHHHHHHHHHHhHHHHHHHH
Q 008910 56 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAAS 90 (549)
Q Consensus 56 ~~~~p~w~~~~~~E~~~WlN~~l~~~Wp~~~~~~~ 90 (549)
..++|+|+.-.|.---.-.|.+.+.+|.+.+.+++
T Consensus 36 LGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 36 LGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred ecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 46799999999988889999999999998888776
No 312
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=30.57 E-value=65 Score=33.34 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=30.9
Q ss_pred eeEEEEEECcc-cCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910 343 LIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (549)
Q Consensus 343 ~lG~~~v~l~~-l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 389 (549)
.+|.+.|+++. +..+...+.|+++..... .....|.+ +++.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~---~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDN---KSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCC---CCcCcceE-EEEEee
Confidence 48999999999 667788999999865321 23344666 677664
No 313
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=30.11 E-value=3.4e+02 Score=22.91 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=48.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCcc-ccEEEEEEe--cCCCCeEEEEEEECCC--C
Q 008910 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVE--DGLHDMLIAEVWDHDT--F 523 (549)
Q Consensus 449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~--~~~~~~l~i~V~d~~~--~ 523 (549)
.|.++-+.-.+.|..+..+.+.||++|+-+.. ....|...... .... ...+.+.+. -+...-+.|++|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~ 82 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGK-KVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSM 82 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTE-EEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTEC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCc-cEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCccc
Confidence 35555555567776666667899999986652 22223322211 1111 122333332 2234569999998873 3
Q ss_pred CCceeEEEEEecccc
Q 008910 524 GKRYLSRYFQNRKTW 538 (549)
Q Consensus 524 ~~d~lG~~~i~l~~l 538 (549)
.++.+.++++.-.=+
T Consensus 83 ~~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 83 SKEKMFRFWFNTGFI 97 (134)
T ss_dssp CCEEEEEEEEEGGGS
T ss_pred ccCeEEEEEEeeeee
Confidence 446788887765433
No 314
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=29.96 E-value=33 Score=28.80 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=12.8
Q ss_pred cchhhHHHHHHHHHhhee
Q 008910 2 GFFFGLVVGLVVGLGIIV 19 (549)
Q Consensus 2 ~~~~g~~~~~l~g~~l~~ 19 (549)
+|++|+..|+.+|++-++
T Consensus 43 slL~Gi~~G~~vG~~~fl 60 (118)
T PF12597_consen 43 SLLYGIAGGFGVGGLRFL 60 (118)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 467888888888776433
No 315
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=29.73 E-value=5.2e+02 Score=26.85 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=40.6
Q ss_pred CEEEEEEEECCC-----C-CCCceeEEEEEECccc-CCCc---eeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910 326 QHLVVRIYDDEG-----I-QSSELIGCAQVRLCEL-EPGK---VKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (549)
Q Consensus 326 ~~L~i~v~d~~~-----~-~~d~~lG~~~v~l~~l-~~~~---~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 390 (549)
..|+|.||.-.. + ...++||.+.++++-- ..++ .+..|..+-+... ........+||+.+.-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~-~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ-GSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC-CCCCCCcceEEEEEeccC
Confidence 469999998442 2 3567999999999721 2222 3567988865321 111234678999887654
No 316
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.70 E-value=3.3e+02 Score=24.01 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=42.6
Q ss_pred CCCCcEEEEEEe--eCC--------CCeEEeeeeCCCCCC-eeccEEEEEEecCC---CCEEEEEEEECCCCCCCceeEE
Q 008910 281 GKSDPYAVLFVR--PLP--------EKTKKSKTINNDLNP-IWNEHFEFIVEDES---TQHLVVRIYDDEGIQSSELIGC 346 (549)
Q Consensus 281 g~~dpyv~v~~~--~~~--------~~~~kT~~~~~t~nP-~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~~d~~lG~ 346 (549)
-.+|-||+...- ++. +-..-+...++-.|| +||--++......+ =..|.+.||..|..++|-+.|.
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GY 103 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGY 103 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeee
Confidence 456788877663 111 111112222333444 66654544443221 1368899999999999999999
Q ss_pred EEEECc
Q 008910 347 AQVRLC 352 (549)
Q Consensus 347 ~~v~l~ 352 (549)
..+++-
T Consensus 104 g~~hiP 109 (187)
T KOG4027|consen 104 GMLHIP 109 (187)
T ss_pred eeEecC
Confidence 888763
No 317
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=26.38 E-value=25 Score=25.90 Aligned_cols=15 Identities=40% Similarity=0.968 Sum_probs=7.9
Q ss_pred cchhhHHHHHHHHHh
Q 008910 2 GFFFGLVVGLVVGLG 16 (549)
Q Consensus 2 ~~~~g~~~~~l~g~~ 16 (549)
|.+||+++|+++.+.
T Consensus 51 GILYGlVIGlil~~i 65 (75)
T COG4064 51 GILYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 318
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=25.98 E-value=52 Score=37.11 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=55.5
Q ss_pred CCcEEEEEEeCCceeeecccccCC-CCCccccEEEEEEecCCCCeEEEEEEECCCCC-CceeEEEEEeccccccc
Q 008910 469 ADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KRYLSRYFQNRKTWLHD 541 (549)
Q Consensus 469 ~dpyv~v~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~-~d~lG~~~i~l~~l~~~ 541 (549)
.++|+.+.+.. ....+|....+. .+|.|.+.|+..+... ...+++.|.+.+..| ...+|.+.++...++.+
T Consensus 138 ~e~Ylt~~l~~-~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHK-ARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeech-hhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 68899998865 344566666666 7899999988877653 357899999888888 57999999999888764
No 319
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=25.93 E-value=36 Score=25.25 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHhhee
Q 008910 5 FGLVVGLVVGLGIIV 19 (549)
Q Consensus 5 ~g~~~~~l~g~~l~~ 19 (549)
+|++.|+++|+.-++
T Consensus 36 IGvi~gi~~~~lt~l 50 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYL 50 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677776666433
No 320
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=25.15 E-value=18 Score=38.87 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=45.9
Q ss_pred eEEEEEEEEccccccc--CC--CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC-CCEEEEEEEECC
Q 008910 262 GTLEVKLVQAKGLTNK--DL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE 336 (549)
Q Consensus 262 g~L~V~v~~a~~L~~~--d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 336 (549)
|....+++.|.+++.- +. .-+.++++...++ .+.++|+....+.+|.|||. .+.+.+.+ ...|...+.+++
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~---~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFG---EQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecc---hhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc
Confidence 4545555666665421 11 1245789988887 78899999999999999996 56655432 223444444444
Q ss_pred C
Q 008910 337 G 337 (549)
Q Consensus 337 ~ 337 (549)
.
T Consensus 356 ~ 356 (975)
T KOG2419|consen 356 E 356 (975)
T ss_pred c
Confidence 3
No 321
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=23.46 E-value=3.2e+02 Score=31.13 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=58.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCce---eeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEE
Q 008910 448 GVLSVTVILAENLPASDLMGKADPYVVLTMK---KSET---RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVW 518 (549)
Q Consensus 448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~---~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~ 518 (549)
..+.++++++.++... ...|-+|.|..+ +.+. ...|..+..+.+|.||+..+|.+. | |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 5678888887766432 233556655543 2111 234554555789999999888875 3 35567777777
Q ss_pred ECC---------------CCCC-c-eeEEEEEeccc---cccccccceecC
Q 008910 519 DHD---------------TFGK-R-YLSRYFQNRKT---WLHDGSEALRLF 549 (549)
Q Consensus 519 d~~---------------~~~~-d-~lG~~~i~l~~---l~~~~~~~~~~~ 549 (549)
.-. ..+. + .+|.+.+.+-+ .+..|...+..|
T Consensus 420 ~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W 470 (1076)
T KOG0904|consen 420 AVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMW 470 (1076)
T ss_pred EeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEec
Confidence 531 0111 3 68888776655 455666555443
No 322
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=22.70 E-value=41 Score=27.98 Aligned_cols=21 Identities=29% Similarity=0.755 Sum_probs=18.0
Q ss_pred cchhhHHHHHHHHHhheeeeE
Q 008910 2 GFFFGLVVGLVVGLGIIVGFV 22 (549)
Q Consensus 2 ~~~~g~~~~~l~g~~l~~~~~ 22 (549)
.|++|.++|-++|.+..++|.
T Consensus 6 ~~l~G~liGgiiGa~aaLL~A 26 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFA 26 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999777664
No 323
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.62 E-value=84 Score=34.49 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=36.3
Q ss_pred CCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC
Q 008910 469 ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523 (549)
Q Consensus 469 ~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~ 523 (549)
.+||+.+.+.-+ +...+.+.+.+..|.|+++|...+.. ...+.|.|+.+...
T Consensus 28 l~~y~~v~vk~~-~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~ 79 (694)
T KOG0694|consen 28 LQPYLAVELKVK-QGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPD 79 (694)
T ss_pred hhhhheecccee-ecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCc
Confidence 478888876531 22234445688999999999999764 34688888877543
No 324
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=21.60 E-value=1.6e+02 Score=27.21 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhheeeeEeech
Q 008910 4 FFGLVVGLVVGLGIIVGFVRSEN 26 (549)
Q Consensus 4 ~~g~~~~~l~g~~l~~~~~~~~~ 26 (549)
.+|.+.|+++|+.+...|..+..
T Consensus 4 ~vg~l~al~laf~~~~~~~~~~~ 26 (209)
T PF14023_consen 4 VVGVLFALLLAFTISSAWSRYDN 26 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888777764433
No 325
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=21.21 E-value=36 Score=35.60 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHhheeeeEeechhhhhhhhhhHHHh
Q 008910 4 FFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTI 39 (549)
Q Consensus 4 ~~g~~~~~l~g~~l~~~~~~~~~~~~~~~~~~~~~~ 39 (549)
++.+.+|+++|+.+.++|.++++++.+.+.++.+++
T Consensus 242 ~~alp~g~l~sl~~~l~~l~~~rr~~sp~~rL~~Ai 277 (524)
T COG4943 242 FLALPLGILISLLALLLWLRIRRRYLSPRRRLQRAI 277 (524)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 566788899998888888776665555544544443
No 326
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=20.88 E-value=2.4e+02 Score=24.66 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=34.9
Q ss_pred CceecCCCcchHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHhhcC
Q 008910 61 SWVVFSHRQKLTWLNHHLEK-LWPYVNEAASELIKSSVEPVLEQYR 105 (549)
Q Consensus 61 ~w~~~~~~E~~~WlN~~l~~-~Wp~~~~~~~~~~~~~~~~~l~~~~ 105 (549)
-|++ ++.++.+|+|.-|.. +|..+.+.+++.-+...+++|=.+.
T Consensus 23 V~~~-~s~~~~~~~~E~l~~~~~~e~~~~ls~~Cr~~A~~~LC~~a 67 (147)
T cd07469 23 VWFN-SSYADPEGLNEQLTTGLWEELIKTVSELCRPAAEKLLCNYA 67 (147)
T ss_pred EEEe-cCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3444 456788999887776 8998888999999999999986653
No 327
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=20.19 E-value=79 Score=34.09 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=31.4
Q ss_pred hhhccCCCCCCCc-eecCCCcchHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhc
Q 008910 50 SKKILPAEFYPSW-VVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQY 104 (549)
Q Consensus 50 ~~~~~~~~~~p~w-~~~~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~ 104 (549)
+..++ .++|-- +.+.+.-.++|.|..+...++-- .+.+.+.+.++.++++.
T Consensus 77 ~~~al--~nmPiGii~~~e~~~veW~Npf~~~if~~~--~~~~~~~~~~~~il~~~ 128 (655)
T COG3887 77 LEEAL--TNMPIGIILFNETNKVEWVNPFASKIFNKN--EIGESLSELIPEILKQL 128 (655)
T ss_pred HHHHH--HhCCceEEEEcCCCceEEecHHHHHhcChh--hhhhhHHHHhHHHHHHH
Confidence 34444 345553 34678889999999999888722 22245555555555544
Done!