BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008912
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 169/452 (37%), Gaps = 97/452 (21%)
Query: 21 ALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKL-----SITMHDAKF 75
A P+++N+GA+ S +R + ++ +N + G K+ S+T
Sbjct: 1 ACDPKIVNIGAVLS--------TRKHEQMFREAVNQANKRHGSWKIQLNATSVTHKPNAI 52
Query: 76 NGFLSIMGALQFMETDTLAIV-----GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP 130
LS+ L + + AI+ P +S+ A ++P+L T S
Sbjct: 53 QMALSVCEDL--ISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSD 110
Query: 131 LQYPF-FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCK 189
F++T P + S EM+ + W +I + +DD +GR L L E K
Sbjct: 111 KSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESK 170
Query: 190 ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249
P +V L++ R +EARVI++ V+ A L M SGYV
Sbjct: 171 AEKVLQFDPGTK----NVTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYV 226
Query: 250 WIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLN- 308
W+ + + LR + PD G IGL
Sbjct: 227 WL------------------VGEREISGNALR-YAPD----------------GIIGLQL 251
Query: 309 ----PYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKK 364
+ D V ++A+A+ L++ N +I+ G
Sbjct: 252 INGKNESAHISDAVGVVAQAVHELLEKENITDPPRGC-----------VGNTNIWKTGPL 300
Query: 365 FLANILQTNMT-GLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPE 423
F ++ + G++G + FN+D +Y I+N +++ Q+G Y+G V+P +
Sbjct: 301 FKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMN-LQNRKLVQVGI---YNGTHVIPND 356
Query: 424 KLYRKPANRSSSNQHLYSVVWPGGVTSKPRGW 455
+ ++WPGG T KPRG+
Sbjct: 357 R----------------KIIWPGGETEKPRGY 372
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 40/239 (16%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 88
AM A D+IN D +L G KL + + D ++ +L+F+
Sbjct: 46 AMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 105
Query: 89 -----ETDTLAIVGPQSAVMAHVLSHLANEL---QVPLLSFTALDPTLS-PLQYPFFVQT 139
E L I G + V +AN L Q+P +S+ + LS +Y +F +T
Sbjct: 106 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 165
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 199
P D Y A+AE++ +F W V + ++ D G G+ A ++ A +R IS +A
Sbjct: 166 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAF-EQEARLR-NISIATA---- 219
Query: 200 QSVTETDVRNELVKV-----RMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253
+ V +++R V + ARV+V+ S + A R ++ + W+A+
Sbjct: 220 EKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASR---ANASFTWVAS 275
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 40/239 (16%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 88
AM A D+IN D +L G KL + + D ++ +L+F+
Sbjct: 47 AMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 106
Query: 89 -----ETDTLAIVGPQSAVMAHVLSHLANEL---QVPLLSFTALDPTLS-PLQYPFFVQT 139
E L I G + V +AN L Q+P +S+ + LS +Y +F +T
Sbjct: 107 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 166
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 199
P D Y A+AE++ +F W V + ++ D G G+ A ++ A +R I +A
Sbjct: 167 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAF-EQEARLR-NICIATA---- 220
Query: 200 QSVTETDVRNELVKV-----RMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253
+ V +++R V + ARV+V+ S + A R+ ++ + W+A+
Sbjct: 221 EKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRV---NASFTWVAS 276
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 36/254 (14%)
Query: 101 AVMAHVLSHLANELQ---VPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLMSAIAEMVSY 156
V V S +A LQ + LSF A P L+ +YP+F +T P+D + AI +++ +
Sbjct: 92 GVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKH 151
Query: 157 FGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKIS---YKSALP-PDQSVTETDVRNELV 212
+ W V + D + +E+R ++ Y + D D +
Sbjct: 152 YQWKRVGTLTQD-----------VQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVK 200
Query: 213 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS----TFIDSKSPLSL 268
K++ + R+I+ VF A M S Y WI W + +++ S
Sbjct: 201 KLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSR 260
Query: 269 KTAKSILGA-----------LTLRQ-HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYD 316
K++L A L+ +Q T K + + +N +G +G + + YAYD
Sbjct: 261 CLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-VGPSKFHGYAYD 319
Query: 317 TVWMIARALKLFLD 330
+W+IA+ L+ ++
Sbjct: 320 GIWVIAKTLQRAME 333
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/277 (18%), Positives = 118/277 (42%), Gaps = 36/277 (12%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLA----------- 94
AM + INSDP +L L + D+ ++ +++ +++F+ ++
Sbjct: 58 AMLHTLERINSDPTLLPNITLGCEIRDSCWHSAVALEQSIEFIRDSLISSEEEEGLVRCV 117
Query: 95 ---------------IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPFFVQ 138
++GP S+ +A + +L +P ++++A LS + +F++
Sbjct: 118 DGSSSSFRSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMR 177
Query: 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPP 198
P+D A+ ++V + W V A+ + + G +G+ A D A+ I++ +
Sbjct: 178 VVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYS 237
Query: 199 DQSVTETDVRNELVKVRMMEARVIV--VHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256
+ D + + + +ARV+ G + GL++ +RLG+ + + W
Sbjct: 238 NAGEQSFDKLLKKLTSHLPKARVVACFCEGMTVRGLLM--AMRRLGLAGEFLLLGSDGWA 295
Query: 257 STFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDF 293
+ ++ + +G +T++ +PD K D+
Sbjct: 296 DRY-----DVTDGYQREAVGGITIKLQSPDVKWFDDY 327
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 362 GKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQ----QIGYWSNYSGL 417
G+K L ++++TN TG+SG + Y+I+N E G +G W N G
Sbjct: 421 GRKLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDN--GE 478
Query: 418 SVVPPEKLYRKPAN 431
+ ++++ K +N
Sbjct: 479 LKMDDDEVWSKKSN 492
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/421 (21%), Positives = 164/421 (38%), Gaps = 59/421 (14%)
Query: 26 VLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSI 81
VL G IF + G + + +A + A + IN + +L L+ ++ F +
Sbjct: 4 VLRFGGIFEYVESGPMGAE--ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEAS 61
Query: 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141
A + AI GP + A+ + + N L VP + T +S + F+V P
Sbjct: 62 KKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQ-TRWKHQVSDNKDSFYVSLYP 120
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA-----EIRCKISYKSAL 196
+ L AI ++V +F W V +++D G+ L + + +R KI L
Sbjct: 121 DFSSLSRAILDLVQFFKWKTVTVVYDDS----TGLIRLQELIKAPSRYNLRLKI---RQL 173
Query: 197 PPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256
P D D + L +++ + ++ + A +GMM Y +I TT L
Sbjct: 174 PADTK----DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTT-L 228
Query: 257 STFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT------------LSNGS 304
F P S + R ++ + + +W+ L +G
Sbjct: 229 DLFALDVEPYRY----SGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGF 284
Query: 305 IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKK 364
+ + YD V +++ A++ F + N K + G +
Sbjct: 285 MTTD--AALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKP---------------WRFGTR 327
Query: 365 FLANILQTNMTGLSGPIHFNQDRSLLHP-SYDIINVIEHGYPQQIGYWSNYSGLSVVPPE 423
F++ I + + GL+G I FN+ L D+I++ E G ++IG W SGL++ +
Sbjct: 328 FMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGTWDPASGLNMTESQ 386
Query: 424 K 424
K
Sbjct: 387 K 387
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 154/408 (37%), Gaps = 26/408 (6%)
Query: 24 PEVLNVGAIFSFGT-VNGQV---SRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGF 78
P V+ +G IF + N QV A + + + IN + +L L+ + F + F
Sbjct: 2 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 61
Query: 79 LSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ 138
+ A + +AI GP + + + N L+VP + L + F+V
Sbjct: 62 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDN-KDTFYVN 120
Query: 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK-LAEIRCKISYKSALP 197
P+ L AI ++V W +++D G+ L + +A R I K
Sbjct: 121 LYPDYASLSHAILDLVQSLKWRSATVVYDDS----TGLIRLQELIMAPSRYNIRLKIRQL 176
Query: 198 PDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257
P S + E+ + R E R+I ++ + A +GMM Y +I TT L
Sbjct: 177 PIDSDDSRPLLKEMKRGR--EFRIIFDCSHTMAA-QILKQAMAMGMMTEYYHFIFTT-LD 232
Query: 258 TFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDT 317
+ P + ++ G L P V +W+ + GL D
Sbjct: 233 LYALDLEPYRY-SGVNLTGFRILNVDNPHVSA---IVEKWSMERLQAAPRAESGL--LDG 286
Query: 318 VWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFLANILQTNMTGL 377
V M A L D + +S + GG +F+ I + GL
Sbjct: 287 VMMTDAA--LLYDAVHIVSVCYQRAPQMTVNSLQCHRHKAWRFGG-RFMNFIKEAQWEGL 343
Query: 378 SGPIHFNQDRSLLHP-SYDIINVIEHGYPQQIGYWSNYSGLSVVPPEK 424
+G I FN+ L DII++ E G +++G WS GL++ K
Sbjct: 344 TGRIVFNKTSGLRTDFDLDIISLKEDGL-EKVGVWSPADGLNITEVAK 390
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAI---------- 95
AM D IN+DP +L L + D+ ++ +++ +++F+ ++I
Sbjct: 54 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRC 113
Query: 96 -------------------VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPF 135
+GP S+ +A + +L +P ++++A LS Y +
Sbjct: 114 LPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 173
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
F++ P+D A+ ++V + W V A+ + + G +G+ A + A+ I++
Sbjct: 174 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDK 233
Query: 196 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 244
+ + D ++ R+ +ARV+V T + +RLG++
Sbjct: 234 IYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV 282
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 99/229 (43%), Gaps = 30/229 (13%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM---------ETDTL--- 93
AM D IN+DP +L L + D+ ++ +++ +++F+ E D L
Sbjct: 49 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRC 108
Query: 94 -----------------AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPF 135
++GP S+ +A + +L +P ++++A LS Y +
Sbjct: 109 LPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 168
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
F++ P+D A+ ++V + W V A+ + + G +G+ A + A+ I++
Sbjct: 169 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDK 228
Query: 196 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 244
+ + D ++ R+ +ARV+V T + +RLG++
Sbjct: 229 IYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV 277
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 89/421 (21%), Positives = 163/421 (38%), Gaps = 59/421 (14%)
Query: 26 VLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSI 81
VL G IF + G + + +A + A + IN + +L L+ ++ F +
Sbjct: 4 VLRFGGIFEYVESGPMGAE--ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEAS 61
Query: 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141
A + AI GP + A+ + + N L VP + T +S + F+V P
Sbjct: 62 KKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQ-TRWKHQVSDNKDSFYVSLYP 120
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA-----EIRCKISYKSAL 196
+ L AI ++V +F W V +++D G+ L + + +R KI L
Sbjct: 121 DFSSLSRAILDLVQFFKWKTVTVVYDDS----TGLIRLQELIKAPSRYNLRLKI---RQL 173
Query: 197 PPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256
P D D + L +++ + ++ + A + MM Y +I TT L
Sbjct: 174 PADTK----DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTT-L 228
Query: 257 STFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT------------LSNGS 304
F P S + R ++ + + +W+ L +G
Sbjct: 229 DLFALDVEPYRY----SGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGF 284
Query: 305 IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKK 364
+ + YD V +++ A++ F + N K + G +
Sbjct: 285 MTTD--AALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKP---------------WRFGTR 327
Query: 365 FLANILQTNMTGLSGPIHFNQDRSLLHP-SYDIINVIEHGYPQQIGYWSNYSGLSVVPPE 423
F++ I + + GL+G I FN+ L D+I++ E G ++IG W SGL++ +
Sbjct: 328 FMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGTWDPASGLNMTESQ 386
Query: 424 K 424
K
Sbjct: 387 K 387
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 28/251 (11%)
Query: 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG 83
P+++N+GA+ S + Q+ R A+ A R + + S+T LS+
Sbjct: 2 PKIVNIGAVLSTKK-HEQIFREAVNQANK--RHFTRKIQLQATSVTHRPNAIQMALSVCE 58
Query: 84 ALQFMETDTLAIV-----GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPF-FV 137
L + + AI+ P + +S+ A ++P++ T S F+
Sbjct: 59 DL--ISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFL 116
Query: 138 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCK-------- 189
+T P + EM+ F W VI I +DD +GR L L K
Sbjct: 117 RTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYEN 176
Query: 190 ---ISYKSALPPDQSVT---ETDVRNE---LVKVRMMEARVIVVHGYSRTGLMVFDVAQR 240
+SY + P E +N L++ + +EARVI++ V+ A
Sbjct: 177 LDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAM 236
Query: 241 LGMMDSGYVWI 251
L M +GYVW+
Sbjct: 237 LDMTGAGYVWL 247
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 106 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 161
Query: 193 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 162 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 221
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 306
F D L ++ + + + + D F+ RW+TL +
Sbjct: 222 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 276
Query: 307 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 366
+ YD V ++ A + Q IS + + G +
Sbjct: 277 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 329
Query: 367 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPE 423
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V E
Sbjct: 330 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVVTLTE 385
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQF----METDT--------- 92
AM A D INSDP +L L + D ++ +L F ++ DT
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 108
Query: 93 ----------LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAP 141
+ ++G + ++ +++++ Q+P +S+ + P LS +Y FF + P
Sbjct: 109 PPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 168
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
D + A+ ++V GW V + ++ G GV +
Sbjct: 169 PDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESF 206
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQF----METDT--------- 92
AM A D INSDP +L L + D ++ +L F ++ DT
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 108
Query: 93 ----------LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAP 141
+ ++G + ++ +++++ Q+P +S+ + P LS +Y FF + P
Sbjct: 109 PPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 168
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
D + A+ ++V GW V + ++ G GV +
Sbjct: 169 PDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESF 206
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 98 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 193 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 154 INVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 213
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 306
F D L ++ + + + + D F+ RW+TL +
Sbjct: 214 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTTT 268
Query: 307 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 366
+ YD V ++ A + Q IS + + G +
Sbjct: 269 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 321
Query: 367 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPE 423
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V E
Sbjct: 322 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVVTLTE 377
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 117/293 (39%), Gaps = 23/293 (7%)
Query: 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 96 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 151
Query: 193 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 152 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 211
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 306
F D L ++ + + + + D F+ RW+TL +
Sbjct: 212 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 266
Query: 307 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 366
+ YD V ++ A + Q IS + + G +
Sbjct: 267 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 319
Query: 367 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 419
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V
Sbjct: 320 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVV 371
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 117/293 (39%), Gaps = 23/293 (7%)
Query: 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 101 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 156
Query: 193 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 157 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 216
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 306
F D L ++ + + + + D F+ RW+TL +
Sbjct: 217 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 271
Query: 307 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 366
+ YD V ++ A + Q IS + + G +
Sbjct: 272 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 324
Query: 367 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 419
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V
Sbjct: 325 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVV 376
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 117/293 (39%), Gaps = 23/293 (7%)
Query: 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 98 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 193 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 154 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 213
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 306
F D L ++ + + + + D F+ RW+TL +
Sbjct: 214 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 268
Query: 307 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 366
+ YD V ++ A + Q IS + + G +
Sbjct: 269 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 321
Query: 367 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 419
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V
Sbjct: 322 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVV 373
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 114/287 (39%), Gaps = 23/287 (8%)
Query: 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192
+PF +Q P+ L A+ ++ Y+ W + A D D+G + + A+ D AE + +++
Sbjct: 98 HPFVIQMRPD---LKGALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 193 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 154 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 213
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 306
F D L ++ + + + + D F+ RW+TL +
Sbjct: 214 ANL--GFTDG-DLLKIQFGGAEVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 268
Query: 307 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 366
+ YD V ++ A + Q IS + + G +
Sbjct: 269 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 321
Query: 367 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS
Sbjct: 322 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSE 367
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 28/251 (11%)
Query: 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG 83
P+++N+GA+ S + Q+ R A+ A R + + S+T LS+
Sbjct: 3 PKIVNIGAVLSTKK-HEQIFREAVNQANK--RHFTRKIQLQATSVTHRPNAIQXALSVCE 59
Query: 84 ALQFMETDTLAIV-----GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPF-FV 137
L + + AI+ P + +S+ A ++P++ T S F+
Sbjct: 60 DL--ISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRXSIYSDKSIHLSFL 117
Query: 138 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCK-------- 189
+T P + E F W VI I +DD +GR L L K
Sbjct: 118 RTVPPYSHQALVWFEXXRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYEN 177
Query: 190 ---ISYKSALPPDQSVT---ETDVRNE---LVKVRMMEARVIVVHGYSRTGLMVFDVAQR 240
+SY + P E +N L++ + +EARVI++ V+ A
Sbjct: 178 LDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAX 237
Query: 241 LGMMDSGYVWI 251
L +GYVW+
Sbjct: 238 LDXTGAGYVWL 248
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 4/159 (2%)
Query: 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTL--SPLQYPFFVQTAPNDLYLMSAIAE 152
I+GP A ++ LA+ +P+LS AL +Y + AP + +
Sbjct: 131 ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLA 190
Query: 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 212
+ + W +++DD RN L + + E+ + +++ + D+ + +
Sbjct: 191 LFRHHHWSRAALVYSDDKLERNCYFTL-EGVHEVFQEEGLHTSIYSFDETKDLDLEDIVR 249
Query: 213 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251
++ E RV+++ S T + VA R GM Y +
Sbjct: 250 NIQASE-RVVIMCASSDTIRSIMLVAHRHGMTSGDYAFF 287
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 4/159 (2%)
Query: 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTL--SPLQYPFFVQTAPNDLYLMSAIAE 152
I+GP A ++ LA+ +P+LS AL +Y + AP + +
Sbjct: 130 ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLA 189
Query: 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 212
+ + W +++DD RN L + + E+ + +++ + D+ + +
Sbjct: 190 LFRHHHWSRAALVYSDDKLERNCYFTL-EGVHEVFQEEGLHTSIYSFDETKDLDLEDIVR 248
Query: 213 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251
++ E RV+++ S T + VA R GM Y +
Sbjct: 249 NIQASE-RVVIMCASSDTIRSIMLVAHRHGMTSGDYAFF 286
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 4/159 (2%)
Query: 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTL--SPLQYPFFVQTAPNDLYLMSAIAE 152
I+GP A ++ LA+ +P+LS AL +Y + AP + +
Sbjct: 88 ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLA 147
Query: 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 212
+ + W +++DD RN L + + E+ + +++ + D+ + +
Sbjct: 148 LFRHHHWSRAALVYSDDKLERNCYFTL-EGVHEVFQEEGLHTSIYSFDETKDLDLEDIVR 206
Query: 213 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251
++ E RV+++ S T + VA R GM Y +
Sbjct: 207 NIQASE-RVVIMCASSDTIRSIMLVAHRHGMTSGDYAFF 244
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 30 GAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM- 88
G++ ++GT + +++A+ D+IN+ + G+++ + D K + +
Sbjct: 18 GSLAAYGTAEQKGAQLAV----DEINA-AGGIDGKQIEVVDKDNKSETAEAASVTTNLVT 72
Query: 89 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMS 148
++ A+VGP ++ A + VPL+S +A L+ Q F+ T D +
Sbjct: 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTF-QDSFQGK 131
Query: 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS--VTETD 206
I+ VS + + ++ D+ + +A+ + SYK + D++ +TD
Sbjct: 132 IISNYVSEKLNAKKVVLYTDN------ASDYAKGIAK-SFRESYKGEIVADETFVAGDTD 184
Query: 207 VRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243
+ L K++ + IVV GY + + A+ +G+
Sbjct: 185 FQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGI 221
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 204 ETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
++ ++N+L K +++ +I+++ +F+VA +G+ GY WI + ++ D+
Sbjct: 183 DSKIQNQLKK---LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDT 238
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 204 ETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
++ ++N+L K +++ +I+++ +F+VA +G+ GY WI + ++ D+
Sbjct: 182 DSKIQNQLKK---LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDT 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,836,424
Number of Sequences: 62578
Number of extensions: 642817
Number of successful extensions: 1275
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 37
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)