BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008913
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 77/170 (45%), Gaps = 3/170 (1%)
Query: 313 RNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFR 372
R + ++ Y +LP LR ++L + + R++ + + ++ ++IR ++ + R
Sbjct: 11 REKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCR 70
Query: 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKN 432
V F G + + ++V+ ++ E F P +I + ++ + G VD+++ +
Sbjct: 71 DLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SD 129
Query: 433 GAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMV 482
G T L GEI ++ + +V+ + + LS H Q++
Sbjct: 130 GV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVL 177
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 375 VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NG 433
+ + +FQGV + ++ +M+ FP I + E LYI+ SG V + + +G
Sbjct: 28 LSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDG 87
Query: 434 AEQFLTKLGSADMAGEIGVIFNIPQPFT 461
E LT +G +DM GE+ IF+ P P T
Sbjct: 88 RENLLTIMGPSDMFGELS-IFD-PGPRT 113
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDV-LIYKNGAE 435
+ +FQGV IA + +++ FP + + E LYI++SG V + +G E
Sbjct: 32 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 91
Query: 436 QFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474
LT +G +DM GE+ IF+ P P T +++V +S
Sbjct: 92 NLLTIMGPSDMFGELS-IFD-PGPRTSSATTITEVRAVS 128
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDV-LIYKNGAE 435
+ +FQGV IA + +++ FP + + E LYI++SG V + +G E
Sbjct: 10 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 69
Query: 436 QFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474
LT +G +DM GE+ IF+ P P T +++V +S
Sbjct: 70 NLLTIMGPSDMFGELS-IFD-PGPRTSSATTITEVRAVS 106
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDV-LIYKNGAE 435
+ +FQGV IA + +++ FP + + E LYI++SG V + +G E
Sbjct: 8 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 67
Query: 436 QFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474
LT +G +DM GE+ IF+ P P T +++V +S
Sbjct: 68 NLLTIMGPSDMFGELS-IFD-PGPRTSSATTITEVRAVS 104
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDV-LIYKNGAE 435
+ +FQGV IA + +++ FP + + E LYI++SG V + +G E
Sbjct: 7 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 66
Query: 436 QFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474
LT +G +DM GE+ IF+ P P T +++V +S
Sbjct: 67 NLLTIMGPSDMFGELS-IFD-PGPRTSSATTITEVRAVS 103
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI ++ G E L+ L D GE+G +F Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDV-LIYKNGAE 435
+ +FQGV IA + +++ FP + + E LYI++SG V + +G E
Sbjct: 32 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 91
Query: 436 QFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474
LT G +DM GE+ IF+ P P T +++V +S
Sbjct: 92 NLLTIXGPSDMFGELS-IFD-PGPRTSSATTITEVRAVS 128
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 74
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 75 RSAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 82
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTEL 517
+ VR K +V +S+ +Q++ ++ + L +M L L E
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVNP-----------DILMRLSAQMARRLQVLAEK 131
Query: 518 LSDLN-IEITGR 528
+ +L +++TGR
Sbjct: 132 VGNLAFLDVTGR 143
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 74
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 75 RSAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 82
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 82
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 326 NRLPEGLREQMLAHMQLRFKTAE-LQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGV 384
+RLP+ L ++ML Q + + E+L+D P +R+ I+ HL + ++ LF+
Sbjct: 28 HRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELLQLP-LFESA 86
Query: 385 SVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSA 444
S + + +K + P +I Q + +Y V SG+++VL L LG
Sbjct: 87 SRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVL----KDNTVLAILGKG 142
Query: 445 DMAG 448
D+ G
Sbjct: 143 DLIG 146
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L+ L D GE+G +F Q
Sbjct: 74 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 132
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 133 RSAWVRAKTACEVAEISYKKFRQLIQVN 160
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300
Y +++W+IVT TTVGYGD+ V ++ + MLF I I +TN
Sbjct: 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITN 94
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQP 459
+P K +I Q E LY +V G+V VLI + G E L L D GE+G +F Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELG-LFEEGQE 82
Query: 460 FT--VRTKRLSQVIRLSHHHLKQMVPID 485
+ VR K +V +S+ +Q++ ++
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVGYGD K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 406 EIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT--KLGSADMAGEIGVIFNIPQPFTVR 463
+I++Q E D YI+ G VL ++ E+++ +LG +D GEI ++ N P+ TV
Sbjct: 281 KIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVV 340
Query: 464 TKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQ 498
+ + ++L ++++ G +I+ IQ
Sbjct: 341 ARGPLKCVKLDRPRFERVL----GPCSEILKRNIQ 371
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 407 IILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465
+I Q + Y+V G VDV Y NG +++T + GE+ +I+ P+ TV+ K
Sbjct: 164 VIQQGNEGDNFYVVDQGEVDV--YVNG--EWVTNISEGGSFGELALIYGTPRAATVKAK 218
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG+GD K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++++S+VTLTTVGYGD K+F +LY+ IGL
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVGYG+ K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVGYG+ K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++++S+VTLTTVGYGD K+F +LY+ IGL
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT--KLGSADMAGEIGVIFNIPQ 458
F +I++Q E + +I++ G+ VL ++ E+F+ +LG +D GEI ++ N P+
Sbjct: 185 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPK 244
Query: 459 PFTVRTKRLSQVIRLSHHHLKQMV 482
TV + + ++L ++++
Sbjct: 245 AATVVARGPLKCVKLDRPRFERVL 268
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 374 TVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG 433
+EK LF + + + + M F +I Q + + Y++ G +DV +
Sbjct: 40 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-- 97
Query: 434 AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465
++ T +G GE+ +I+ P+ TV+ K
Sbjct: 98 --EWATSVGEGGSFGELALIYGTPRAATVKAK 127
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT--KLGSADMAGEIGVIFNIPQ 458
F +I++Q E + +I++ G+ VL ++ E+F+ +LG +D GEI ++ N P+
Sbjct: 183 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPR 242
Query: 459 PFTVRTKRLSQVIRLSHHHLKQMV 482
TV + + ++L ++++
Sbjct: 243 AATVVARGPLKCVKLDRPRFERVL 266
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 374 TVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG 433
+EK LF + + + + M F +I Q + + Y++ G +DV +
Sbjct: 38 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-- 95
Query: 434 AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465
++ T +G GE+ +I+ P+ TV+ K
Sbjct: 96 --EWATSVGEGGSFGELALIYGTPRAATVKAK 125
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT--KLGSADMAGEIGVIFNIPQ 458
F +I++Q E + +I++ G+ VL ++ E+F+ +LG +D GEI ++ N P+
Sbjct: 181 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPR 240
Query: 459 PFTVRTKRLSQVIRLSHHHLKQMV 482
TV + + ++L ++++
Sbjct: 241 AATVVARGPLKCVKLDRPRFERVL 264
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 374 TVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG 433
+EK LF + + + + M F +I Q + + Y++ G +DV +
Sbjct: 36 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-- 93
Query: 434 AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465
++ T +G GE+ +I+ P+ TV+ K
Sbjct: 94 --EWATSVGEGGSFGELALIYGTPRAATVKAK 123
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNL 301
+++W++VT TTVGYGD+ KV + ML I +IG ++N+
Sbjct: 181 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNL 301
+++W++VT TTVGYGD+ KV + ML I +IG ++N+
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG GD K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/151 (16%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 352 EEVLEDLPKAIRSSISQHLFR--GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIIL 409
EE ++ P+ + + R + LF+ + + ++Q++ M + +I
Sbjct: 15 EEEEDNDPRVVHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFEKIVKTDEHVID 74
Query: 410 QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQ 469
Q + + Y++ G D+L+ K+ + + + + GE+ +++N P+ T+
Sbjct: 75 QGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIIATSEGS 134
Query: 470 VIRLSHHHLKQMVPIDHGDGKKIMNNFIQYV 500
+ L ++++ ++ +K+ +FI+ V
Sbjct: 135 LWGLDRVTFRRIIVKNNAKKRKMFESFIESV 165
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 368 QHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDV 427
+ +F +E LF+ + + ++V + + + II Q E YI+ SG V +
Sbjct: 155 RKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSI 214
Query: 428 LIY------KNGAEQ--FLTKLGSADMAGEIGVIFNIPQ 458
LI KNG Q + GE+ ++ N P+
Sbjct: 215 LIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPR 253
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ KVF +LY+ IGL
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 390 AQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449
A++ + + + P II + + + Y++ GAVDV K G + + KL D GE
Sbjct: 142 AKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDV--SKKG-QGVINKLKDHDYFGE 198
Query: 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMV 482
+ ++ ++P+ TV + ++V L ++++
Sbjct: 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 374 TVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG 433
++ +LF + D +++ ++ + P II Q + Y+V G VD + N
Sbjct: 8 SIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNK 67
Query: 434 AEQFLTKLGSADMAGEIGVIFNIPQPFTV 462
+ G GE+ +++N P+ TV
Sbjct: 68 ----VNSSGPGSSFGELALMYNSPRAATV 92
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS++T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 41 YPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307
+ Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T+Y +V +AV
Sbjct: 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSY-------GLVFAAV 133
Query: 308 RTLFM 312
T F+
Sbjct: 134 ATWFV 138
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ G+T++
Sbjct: 69 YPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 110
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 62 YPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 35.8 bits (81), Expect = 0.065, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 41 YPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFM 312
+++W++VTL+T GYGD + +V M+ IG+ G + R F+
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFV 224
Query: 313 RN 314
RN
Sbjct: 225 RN 226
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 35.4 bits (80), Expect = 0.074, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ G+T++
Sbjct: 68 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 109
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304
+T S+YW+ VT+ TVGYGD F + ++ IG A + + +++
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 41 YPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ G+T++
Sbjct: 41 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 82
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 197 FITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYW 256
F ++ ++ L + CF+F AA + E+ W + S Y+
Sbjct: 164 FSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDW---------------NFLESFYF 208
Query: 257 SIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303
++L+T+G GD GE L+ IG+T Y++ + ++V
Sbjct: 209 CFISLSTIGLGDY---VPGEGYNQKFRELYKIGITCYLLLGLIAMLV 252
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLT-AYIIGNMTNLIVHSAVR 308
+T +++++ L+T GYG ++ G K F ++Y + I T ++ + + VH R
Sbjct: 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRR 153
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT 439
LF+ + + ++Q++ M + +I Q + + Y++ G D+ + +G + +
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVG 211
Query: 440 KLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQY 499
+ GE+ +++N P+ T+ + L ++++ ++ +K+ +FI+
Sbjct: 212 NYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE- 270
Query: 500 VKGLKQEMLDELPFLTEL 517
LPFL L
Sbjct: 271 ----------SLPFLKSL 278
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 41 YPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT 439
LF+ + + ++Q++ M + +I Q + + Y++ G D+ + +G + +
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVG 211
Query: 440 KLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQY 499
+ GE+ +++N P+ T+ + L ++++ ++ +K+ +FI+
Sbjct: 212 NYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE- 270
Query: 500 VKGLKQEMLDELPFLTEL 517
LPFL L
Sbjct: 271 ----------SLPFLKSL 278
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 40 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 81
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 42 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 83
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 41 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 62 YPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT 439
LF+ + + ++Q++ M + +I Q + + Y++ G D+ + +G + +
Sbjct: 41 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVG 100
Query: 440 KLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQY 499
+ GE+ +++N P+ T+ + L ++++ ++ +K+ +FI+
Sbjct: 101 NYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE- 159
Query: 500 VKGLKQEMLDELPFLTEL 517
LPFL L
Sbjct: 160 ----------SLPFLKSL 167
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 418
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 418
>pdb|3IWZ|A Chain A, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|B Chain B, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|C Chain C, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|D Chain D, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
Length = 230
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQF-LTKLGSADMAGEIGV-IFNIPQ 458
+P + ++ + LY V+SG+V ++ ++ + L GS + GE+G+ I + +
Sbjct: 39 YPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTR 98
Query: 459 PFTVRTKRLSQVIRLSHHHLKQM 481
+RT+ ++ +S+ L+Q+
Sbjct: 99 EVILRTRTQCELAEISYERLQQL 121
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 410 QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQ 469
Q E T YI++ G+V+V+IY G + L D G++ ++ + P+ ++
Sbjct: 375 QGEEGTSWYIILKGSVNVVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASI------- 424
Query: 470 VIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDEL 511
V+R + H + +D DG +I+ + LK+ D L
Sbjct: 425 VLREDNCHF---LRVDKEDGNRILRDVEANTVRLKEHDQDVL 463
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 62 YPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAV 272
Y +++WS+ T TTVGYGDL+ V
Sbjct: 62 YPRALWWSVETATTVGYGDLYPV 84
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304
+T S+YW+ VT+ TVGYGD F + ++ I A + + +++
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARLLTFLIN 100
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 248 LGYTYSIYWSIVTLTTVGYGDLHAVN-TGEKV 278
+ Y +I+WS+ T TTVGYGD + V G KV
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303
+T S+YW+ VT+ TVGYGD F ++ IG A + + ++
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVAVERLLEFLI 82
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308
G+ + ++S+ TL TVGYGD+H L + + A G + +
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155
Query: 309 TLFMRNAI 316
+F R+AI
Sbjct: 156 IMFARHAI 163
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308
G+ + ++S+ TL TVGYGD+H L + + A G + +
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155
Query: 309 TLFMRNAI 316
+F R+AI
Sbjct: 156 IMFARHAI 163
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL V ++ ++ M+ G+T++
Sbjct: 40 YPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV--AGITSF 81
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL V ++ ++ M+ G+T++
Sbjct: 41 YPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV--AGITSF 82
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303
+T S+YW+ VT+ TVGYGD F ++ IG A + + ++
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLI 82
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T T VGYGDL+ V ++ ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVL-IYKNGAEQFL 438
LF G++ + + +S + +P I Q ++ LY+V SG V + + G E+ L
Sbjct: 6 LFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL 65
Query: 439 TKLGSADMAGEIGVI 453
LG ++ GE+ ++
Sbjct: 66 ALLGPGELFGEMSLL 80
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 374 TVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG 433
+EK LF + + + + M F +I Q + + Y++ G +DV +
Sbjct: 46 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-- 103
Query: 434 AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465
++ T +G GE+ +I+ P+ TV+ K
Sbjct: 104 --EWATSVGEGGSFGELALIYGTPRAATVKAK 133
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 375 VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGA 434
+EK LF + + + + M F +I Q + + Y++ G +DV +
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV----N 95
Query: 435 EQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465
++ T +G GE+ +I+ P+ TV+ K
Sbjct: 96 NEWATSVGEGGSFGELALIYGTPRAATVKAK 126
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG + G K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGETPPPQTDFG-KIFTILYIFIGIGL 72
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 347 AELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVE 406
A ++ ++ K +S S+ L + + + + + I ++V M +
Sbjct: 13 ASIEGRGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSC 72
Query: 407 IILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT 464
II + ++ + +Y++ G V+V K G + L +G + GE+ +++N + TV+T
Sbjct: 73 IIKEGDVGSLVYVMEDGKVEVT--KEGVK--LCTMGPGKVFGELAILYNCTRTATVKT 126
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG + G K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGNTPPPQTDFG-KIFTILYIFIGIGL 72
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG + G K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGDTPPPQTDFG-KIFTILYIFIGIGL 72
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 250 YTYSIYWSIVTLTTVGYGD 268
+T S+YW+ VT+ TVGYGD
Sbjct: 36 WTVSLYWTFVTIATVGYGD 54
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303
+T S+YW+ VT+ VGYGD F ++ IG A + + ++
Sbjct: 29 WTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLI 82
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 358 LPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDL 417
LP +S S+ L + + + + + I ++V M + II + ++ + +
Sbjct: 8 LPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLV 67
Query: 418 YIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT 464
Y++ G V+V K G + L +G + GE+ +++N + TV+T
Sbjct: 68 YVMEDGKVEVT--KEGVK--LCTMGPGKVFGELAILYNCTRTATVKT 110
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 250 YTYSIYWSIVTLTTVGYGD 268
+T S+YW+ VT+ TVGYGD
Sbjct: 29 WTVSLYWTFVTIATVGYGD 47
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT 309
+ IYW+I +TT+G+GD+ T E + Y+ +I + +I ++I+ +
Sbjct: 52 FMAGIYWTITVMTTLGFGDI----TFES--DAGYLFASIVTVSGVI--FLDIILPFGFVS 103
Query: 310 LFMRNAINEILRYGSKNRLPEGLREQML 337
+F+ I LRY LP+ R +L
Sbjct: 104 MFLAPWIERRLRYHPTIELPDDTRGHIL 131
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 53/117 (45%)
Query: 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT 439
LF+ + + ++Q++ M + +I Q + + Y++ G D+ + +G + +
Sbjct: 45 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVG 104
Query: 440 KLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNF 496
+ GE+ +++N P+ T+ + L ++++ ++ +K+ +F
Sbjct: 105 NYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESF 161
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLH 270
G+ + ++S+ TL TVGYGD+H
Sbjct: 78 GFGGAFFFSVETLATVGYGDMH 99
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 410 QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQ 469
Q E T YI++ G+V+V+IY G + L D G++ ++ + P+ ++
Sbjct: 375 QGEEGTSWYIILKGSVNVVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASI------- 424
Query: 470 VIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDEL 511
V+R + H + +D D +I+ + LK+ D L
Sbjct: 425 VLREDNCHF---LRVDKEDFNRILRDVEANTVRLKEHDQDVL 463
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 40/83 (48%)
Query: 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT 439
LF+ + + ++Q++ M + +I Q + + Y++ G D+ + +G + +
Sbjct: 51 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVG 110
Query: 440 KLGSADMAGEIGVIFNIPQPFTV 462
+ GE+ +++N P+ T+
Sbjct: 111 NYDNRGSFGELALMYNTPRAATI 133
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 410 QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQ 469
Q E T YI++ G+V+V+IY G + L D G++ ++ + P+ ++
Sbjct: 70 QGEEGTSWYIILKGSVNVVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASI------- 119
Query: 470 VIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDEL 511
V+R + H + +D D +I+ + LK+ D L
Sbjct: 120 VLREDNCHF---LRVDKEDFNRILRDVEANTVRLKEHDQDVL 158
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 375 VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDV-LIYKNG 433
++++ LFQ V D + + + F P ++ Q+ L++V +G V V + G
Sbjct: 8 LKRSPLFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGG 67
Query: 434 AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLK 479
E+ L + + + GE V+ + + +VR + + L H +
Sbjct: 68 RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHREHFE 113
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 410 QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQ 469
Q E T YI++ G+V+V+IY G + L D G++ ++ + P+ ++
Sbjct: 375 QGEEGTSWYIILKGSVNVVIYGKG---VVCTLHEGDDFGKLALVNDAPRAASI------- 424
Query: 470 VIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDEL 511
V+R + H + +D D +I+ + LK+ D L
Sbjct: 425 VLREDNCHF---LRVDKEDFNRILRDVEANTVRLKEHDQDVL 463
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++W+ T TTV YGDL+ V ++ ++ M+ G+T++
Sbjct: 62 YPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 250 YTYSIYWSIVTLTTVGYGDL 269
+ IYW+I +TT+G+GD+
Sbjct: 52 FMAGIYWTITVMTTLGFGDI 71
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 253 SIYWSIVTLTTVGYGD 268
+IY+ IVTLTTVG+GD
Sbjct: 228 AIYFVIVTLTTVGFGD 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,296,304
Number of Sequences: 62578
Number of extensions: 608312
Number of successful extensions: 1954
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1847
Number of HSP's gapped (non-prelim): 123
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)