Query 008913
Match_columns 549
No_of_seqs 305 out of 3106
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 18:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 5.2E-82 1.1E-86 659.8 43.7 454 42-496 59-544 (727)
2 PLN03192 Voltage-dependent pot 100.0 4.5E-80 9.8E-85 687.8 53.5 486 21-507 21-508 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.3E-69 2.8E-74 524.7 35.0 421 67-500 3-438 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 5.5E-71 1.2E-75 539.5 24.1 463 19-496 180-669 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.7E-63 5.9E-68 487.1 32.8 434 50-503 217-659 (815)
6 KOG3713 Voltage-gated K+ chann 99.9 7.3E-24 1.6E-28 208.9 16.7 246 42-317 172-445 (477)
7 KOG1419 Voltage-gated K+ chann 99.8 4.3E-20 9.4E-25 182.4 10.1 272 46-341 79-354 (654)
8 KOG1545 Voltage-gated shaker-l 99.8 1.6E-20 3.4E-25 176.0 1.5 185 89-303 252-447 (507)
9 PRK09392 ftrB transcriptional 99.7 4.2E-16 9E-21 149.3 15.3 135 373-507 7-141 (236)
10 KOG0614 cGMP-dependent protein 99.6 3.8E-16 8.1E-21 154.0 7.3 158 365-526 146-303 (732)
11 KOG1420 Ca2+-activated K+ chan 99.6 8.2E-17 1.8E-21 159.3 1.0 287 45-383 111-418 (1103)
12 PRK11753 DNA-binding transcrip 99.6 1.5E-14 3.2E-19 136.1 15.8 125 382-506 6-132 (211)
13 PF00520 Ion_trans: Ion transp 99.6 2E-15 4.2E-20 140.4 8.6 192 94-298 1-200 (200)
14 cd00038 CAP_ED effector domain 99.6 2.2E-14 4.7E-19 120.3 11.5 113 380-492 1-114 (115)
15 PRK10402 DNA-binding transcrip 99.5 4.6E-14 1E-18 133.9 12.4 113 390-502 25-138 (226)
16 KOG4390 Voltage-gated A-type K 99.5 5.5E-17 1.2E-21 153.7 -8.5 182 91-303 228-410 (632)
17 PF00027 cNMP_binding: Cyclic 99.5 5.1E-14 1.1E-18 113.1 9.5 89 399-487 2-91 (91)
18 COG0664 Crp cAMP-binding prote 99.5 2.4E-13 5.2E-18 127.9 14.4 133 377-509 4-137 (214)
19 KOG1113 cAMP-dependent protein 99.5 9.1E-14 2E-18 131.7 9.6 129 372-504 121-249 (368)
20 PRK11161 fumarate/nitrate redu 99.5 4.1E-13 8.8E-18 128.5 14.2 131 375-506 15-147 (235)
21 smart00100 cNMP Cyclic nucleot 99.5 5.8E-13 1.3E-17 112.3 12.6 114 380-493 1-117 (120)
22 COG2905 Predicted signal-trans 99.5 8E-13 1.7E-17 132.7 14.0 136 372-510 6-141 (610)
23 TIGR03697 NtcA_cyano global ni 99.4 2.9E-12 6.3E-17 118.6 12.3 104 404-507 1-107 (193)
24 PRK09391 fixK transcriptional 99.4 5.5E-12 1.2E-16 120.0 13.1 114 391-507 33-147 (230)
25 KOG0614 cGMP-dependent protein 99.3 2E-12 4.3E-17 128.1 7.6 122 369-490 268-392 (732)
26 PLN02868 acyl-CoA thioesterase 99.3 1.6E-11 3.6E-16 126.8 14.3 118 372-491 7-124 (413)
27 PF07885 Ion_trans_2: Ion chan 99.3 1.6E-11 3.5E-16 95.5 9.9 56 248-303 23-78 (79)
28 PRK13918 CRP/FNR family transc 99.3 4.8E-11 1E-15 111.3 12.8 103 395-504 5-110 (202)
29 KOG1113 cAMP-dependent protein 99.1 1.8E-10 3.9E-15 109.6 6.7 114 369-485 236-349 (368)
30 PRK10537 voltage-gated potassi 98.9 2.9E-08 6.2E-13 100.8 15.3 55 248-302 167-221 (393)
31 KOG2302 T-type voltage-gated C 98.8 1.3E-07 2.8E-12 100.1 15.4 166 35-212 1089-1267(1956)
32 KOG2968 Predicted esterase of 98.6 4.4E-08 9.6E-13 103.3 4.9 117 387-503 499-616 (1158)
33 PF08412 Ion_trans_N: Ion tran 98.5 1.1E-07 2.3E-12 71.6 4.2 46 43-88 29-74 (77)
34 KOG3684 Ca2+-activated K+ chan 98.4 5E-06 1.1E-10 82.3 14.4 92 246-345 284-375 (489)
35 PF01007 IRK: Inward rectifier 98.1 1.2E-05 2.6E-10 79.6 10.3 95 205-306 42-143 (336)
36 KOG2968 Predicted esterase of 97.8 8.9E-05 1.9E-09 79.1 10.3 112 391-502 110-229 (1158)
37 KOG1418 Tandem pore domain K+ 97.8 0.00011 2.4E-09 76.8 10.8 56 249-304 115-170 (433)
38 PRK11832 putative DNA-binding 97.8 0.00066 1.4E-08 61.8 13.4 105 388-496 14-119 (207)
39 PF04831 Popeye: Popeye protei 97.8 0.00085 1.8E-08 57.1 13.0 110 383-496 14-130 (153)
40 KOG4404 Tandem pore domain K+ 97.7 0.00017 3.8E-09 68.5 9.1 58 249-306 186-251 (350)
41 KOG3193 K+ channel subunit [In 97.6 0.00012 2.6E-09 73.8 6.7 51 250-300 218-268 (1087)
42 KOG4404 Tandem pore domain K+ 97.5 0.00018 4E-09 68.3 5.8 52 248-299 79-130 (350)
43 PLN03223 Polycystin cation cha 97.3 0.1 2.2E-06 59.3 24.3 54 57-110 1172-1233(1634)
44 KOG3827 Inward rectifier K+ ch 97.2 0.0037 8E-08 61.2 11.4 95 206-307 71-172 (400)
45 KOG2301 Voltage-gated Ca2+ cha 96.6 0.0092 2E-07 70.1 10.4 146 91-268 474-621 (1592)
46 KOG3542 cAMP-regulated guanine 96.6 0.006 1.3E-07 63.4 7.7 111 370-484 278-390 (1283)
47 KOG2301 Voltage-gated Ca2+ cha 96.4 0.013 2.8E-07 69.0 9.2 140 64-224 843-985 (1592)
48 KOG2302 T-type voltage-gated C 95.9 0.25 5.3E-06 54.2 15.3 102 62-180 80-187 (1956)
49 KOG3542 cAMP-regulated guanine 95.5 0.019 4.1E-07 59.8 5.2 90 373-474 37-126 (1283)
50 KOG1418 Tandem pore domain K+ 95.4 0.0064 1.4E-07 63.5 1.4 48 248-295 241-296 (433)
51 PF00520 Ion_trans: Ion transp 94.1 0.6 1.3E-05 42.4 11.1 27 198-224 97-123 (200)
52 TIGR00870 trp transient-recept 93.5 10 0.00022 42.9 21.3 25 200-224 507-531 (743)
53 KOG3676 Ca2+-permeable cation 92.1 11 0.00025 41.2 17.8 82 254-336 591-681 (782)
54 PF08016 PKD_channel: Polycyst 91.5 7 0.00015 40.8 15.7 23 89-111 241-263 (425)
55 KOG3614 Ca2+/Mg2+-permeable ca 90.8 15 0.00033 42.6 17.8 89 56-153 789-877 (1381)
56 PLN03192 Voltage-dependent pot 90.5 22 0.00047 40.7 19.7 42 356-397 327-372 (823)
57 PF00060 Lig_chan: Ligand-gate 89.7 0.61 1.3E-05 40.5 5.0 76 245-326 40-115 (148)
58 COG4709 Predicted membrane pro 88.8 2.2 4.8E-05 37.9 7.6 74 314-389 5-83 (195)
59 KOG3599 Ca2+-modulated nonsele 84.1 80 0.0017 35.7 19.4 23 90-112 498-520 (798)
60 PF07883 Cupin_2: Cupin domain 82.9 7.4 0.00016 28.5 7.2 67 399-473 3-70 (71)
61 PLN03223 Polycystin cation cha 82.4 57 0.0012 38.5 16.3 19 132-150 1208-1226(1634)
62 PF08006 DUF1700: Protein of u 82.2 8.3 0.00018 34.9 8.5 55 314-370 5-64 (181)
63 KOG0498 K+-channel ERG and rel 81.3 96 0.0021 34.5 20.9 43 356-398 371-418 (727)
64 KOG3609 Receptor-activated Ca2 79.0 11 0.00023 41.6 9.1 19 132-150 411-429 (822)
65 KOG0500 Cyclic nucleotide-gate 76.8 1E+02 0.0022 32.2 16.4 74 356-434 259-358 (536)
66 KOG4440 NMDA selective glutama 75.5 7.5 0.00016 41.1 6.5 93 207-303 575-667 (993)
67 TIGR00870 trp transient-recept 70.5 1.7E+02 0.0037 33.0 16.7 16 132-147 416-431 (743)
68 PF14377 DUF4414: Domain of un 57.9 31 0.00066 28.2 5.7 47 321-369 48-105 (108)
69 smart00835 Cupin_1 Cupin. This 57.2 46 0.00099 28.7 7.1 79 396-477 32-112 (146)
70 KOG3300 NADH:ubiquinone oxidor 56.4 65 0.0014 26.9 7.1 45 316-360 62-106 (146)
71 PF05899 Cupin_3: Protein of u 52.7 40 0.00087 25.3 5.2 41 402-448 15-55 (74)
72 PRK13290 ectC L-ectoine syntha 52.4 69 0.0015 26.9 7.1 69 397-473 38-106 (125)
73 TIGR03037 anthran_nbaC 3-hydro 51.9 57 0.0012 28.7 6.6 58 413-476 47-104 (159)
74 KOG1054 Glutamate-gated AMPA-t 50.9 21 0.00046 37.7 4.3 54 249-303 595-648 (897)
75 PF13314 DUF4083: Domain of un 50.1 84 0.0018 22.2 5.8 14 311-324 43-56 (58)
76 KOG1052 Glutamate-gated kainat 46.1 75 0.0016 35.3 8.2 54 251-305 383-436 (656)
77 PF07697 7TMR-HDED: 7TM-HD ext 44.5 2.2E+02 0.0048 26.2 10.1 59 356-415 146-207 (222)
78 COG0662 {ManC} Mannose-6-phosp 44.2 56 0.0012 27.5 5.3 48 395-447 37-85 (127)
79 PF10011 DUF2254: Predicted me 43.2 1.1E+02 0.0024 31.2 8.3 57 247-303 98-154 (371)
80 PF02037 SAP: SAP domain; Int 41.6 63 0.0014 20.2 4.0 25 316-340 6-35 (35)
81 PF14377 DUF4414: Domain of un 39.4 83 0.0018 25.6 5.5 49 327-375 8-70 (108)
82 KOG2378 cAMP-regulated guanine 38.8 23 0.00049 36.2 2.4 43 443-485 1-44 (573)
83 COG5559 Uncharacterized conser 38.8 37 0.00081 23.9 2.7 19 352-370 5-23 (65)
84 KOG0501 K+-channel KCNQ [Inorg 38.4 5.4E+02 0.012 27.8 16.8 51 355-405 499-554 (971)
85 KOG3713 Voltage-gated K+ chann 37.7 1.2E+02 0.0026 31.6 7.4 25 90-114 273-297 (477)
86 PRK04190 glucose-6-phosphate i 37.6 1.3E+02 0.0028 27.5 6.9 52 397-448 71-131 (191)
87 COG1917 Uncharacterized conser 35.6 76 0.0016 26.7 4.9 50 396-450 45-95 (131)
88 PRK13264 3-hydroxyanthranilate 35.0 95 0.002 27.8 5.4 59 412-476 52-110 (177)
89 PRK11677 hypothetical protein; 29.5 3.6E+02 0.0078 23.0 7.9 40 308-361 30-69 (134)
90 PF06295 DUF1043: Protein of u 29.0 2.7E+02 0.0058 23.5 7.1 38 310-361 28-65 (128)
91 PRK09108 type III secretion sy 28.8 6.3E+02 0.014 25.6 11.5 62 277-338 180-241 (353)
92 PRK11171 hypothetical protein; 28.1 2.1E+02 0.0046 27.6 7.1 69 397-473 64-134 (266)
93 PF14841 FliG_M: FliG middle d 26.8 95 0.0021 23.6 3.6 42 350-399 28-69 (79)
94 KOG3599 Ca2+-modulated nonsele 26.4 1E+03 0.022 27.2 14.7 20 132-151 493-512 (798)
95 TIGR03404 bicupin_oxalic bicup 26.2 1.5E+02 0.0033 30.1 6.0 52 397-448 70-121 (367)
96 PF00190 Cupin_1: Cupin; Inte 26.2 1.6E+02 0.0034 25.2 5.4 54 397-450 37-97 (144)
97 PRK09943 DNA-binding transcrip 25.9 2.5E+02 0.0055 25.2 6.9 66 400-473 113-179 (185)
98 TIGR03404 bicupin_oxalic bicup 25.0 3.5E+02 0.0075 27.6 8.3 74 396-473 247-322 (367)
99 KOG1545 Voltage-gated shaker-l 24.1 1.8E+02 0.004 29.1 5.7 27 170-196 323-349 (507)
100 PF12973 Cupin_7: ChrR Cupin-l 23.8 3.5E+02 0.0075 20.9 6.7 63 396-472 26-88 (91)
101 PRK11171 hypothetical protein; 23.8 3.6E+02 0.0078 26.0 7.9 49 395-448 185-234 (266)
102 COG3718 IolB Uncharacterized e 23.2 2E+02 0.0042 27.0 5.4 72 397-477 32-112 (270)
103 PRK08156 type III secretion sy 22.9 8.1E+02 0.018 24.9 11.6 22 317-338 213-234 (361)
104 COG3450 Predicted enzyme of th 22.3 2.6E+02 0.0057 23.1 5.5 42 401-448 52-93 (116)
105 PF08016 PKD_channel: Polycyst 22.1 8.9E+02 0.019 25.1 11.1 20 129-148 234-253 (425)
106 PRK12721 secretion system appa 22.1 8.3E+02 0.018 24.7 11.6 61 278-338 179-239 (349)
107 TIGR00769 AAA ADP/ATP carrier 21.3 8.8E+02 0.019 25.7 10.7 51 208-286 123-174 (472)
108 KOG1053 Glutamate-gated NMDA-t 21.2 8.6E+02 0.019 27.9 10.4 34 270-303 630-663 (1258)
109 TIGR00933 2a38 potassium uptak 20.0 3.2E+02 0.0068 28.1 7.0 70 204-287 200-271 (390)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-82 Score=659.76 Aligned_cols=454 Identities=38% Similarity=0.639 Sum_probs=416.6
Q ss_pred cccccccCCeEEcCCChhHHhHHHHHHHHHHHHHHHhhhhhhcccc----------cccchhhHHHHHHHHHHhhhheee
Q 008913 42 DEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKA----------ATGSLLIVDLVVDFFFAADIIFTF 111 (549)
Q Consensus 42 ~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~----------~~~~~~~~~~~~~~if~~Di~l~f 111 (549)
+++..+...++++|+|+++..||.+++++++|++++.|++++|... ....+.++|.++|++|++||+++|
T Consensus 59 ~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~F 138 (727)
T KOG0498|consen 59 KERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNF 138 (727)
T ss_pred hcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhh
Confidence 3444566678999999999999999999999999999999998765 456789999999999999999999
Q ss_pred eEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcC-----CCCCcchhhHHHHHHHHhHHHHHHHHH
Q 008913 112 FVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTG-----QLHDGRVFGFLNLLRLWRLRRVGELFT 186 (549)
Q Consensus 112 ~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~-----~~~~~~~~~~l~llrllRl~ri~~~~~ 186 (549)
+|+|+++.+.++|.||++|++||+++ ||++|++|++|++.++..... .........++.+.|++|+.|+.+++.
T Consensus 139 rtayv~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~ 217 (727)
T KOG0498|consen 139 RTAYVDPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFA 217 (727)
T ss_pred eEEEECCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999 999999999999988654332 111124677899999999999999999
Q ss_pred HhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCC-cccccc-----cCC----cccCchhhhHHH
Q 008913 187 RLEKDIRFTY--FITRLSKLICVTLFAVHSAGCFYFYLAAHHK--IPEN-TWIGSQ-----VND----FKHRSIWLGYTY 252 (549)
Q Consensus 187 ~l~~~~~~~~--~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~--~~~~-~W~~~~-----~~~----~~~~~~~~~Y~~ 252 (549)
++++...+++ .|....++++.+++.+||.||+||+++.... +..+ +|+... ..+ +...+++.+|++
T Consensus 218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~ 297 (727)
T KOG0498|consen 218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVY 297 (727)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHH
Confidence 9998887766 4455779999999999999999999998665 5555 898852 233 666788999999
Q ss_pred HHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 008913 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGL 332 (549)
Q Consensus 253 sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l 332 (549)
|+||+++||||+|||+.+|.+..|++|+|++|++|.++||++||+|+++++..+.+..+|+.++.++++||+++++|++|
T Consensus 298 aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~L 377 (727)
T KOG0498|consen 298 ALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDL 377 (727)
T ss_pred HHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh-cccHHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecC
Q 008913 333 REQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQN 411 (549)
Q Consensus 333 ~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g 411 (549)
|+||++|++++|+.. |.+++++|++||+.||+||+.++|.++++++|+|+++|++++.+|+.+++...|+|||+|++||
T Consensus 378 RqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireG 457 (727)
T KOG0498|consen 378 RQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREG 457 (727)
T ss_pred HHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecC
Confidence 999999999999985 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe-chhhhcC-CCeeeEEEEcceEEEEEeCHHHHHhhhccCcchH
Q 008913 412 EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG-EIGVIFN-IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDG 489 (549)
Q Consensus 412 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG-e~~~l~~-~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~ 489 (549)
|+.++||||.+|.+++....+|.+..+..+++||+|| |+..... .|+++||+|++.|+++.|++++|..+++++|.+.
T Consensus 458 d~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~ 537 (727)
T KOG0498|consen 458 DPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLG 537 (727)
T ss_pred CccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHH
Confidence 9999999999999999997777888899999999999 8888877 8899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008913 490 KKIMNNF 496 (549)
Q Consensus 490 ~~~~~~~ 496 (549)
..++++.
T Consensus 538 ~~~l~~~ 544 (727)
T KOG0498|consen 538 SKFLQHT 544 (727)
T ss_pred HHHHHhH
Confidence 9988843
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=4.5e-80 Score=687.85 Aligned_cols=486 Identities=50% Similarity=0.871 Sum_probs=451.0
Q ss_pred cccccccccccCCCCCCCCcc-cccccccCCeEEcCCChhHHhHHHHHHHHHHHHHHHhhhhhhccccc-ccchhhHHHH
Q 008913 21 GEIKNLASVSSSLLPAFGTVV-DEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA-TGSLLIVDLV 98 (549)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~~-~~~~~~~~~~ 98 (549)
+..-+..++++.+||++|++. ++++.+.++|+|+|+++++.+||.+++++++|+++++|++++|.... ...+.++|.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i 100 (823)
T PLN03192 21 SGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNV 100 (823)
T ss_pred CcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHH
Confidence 334566778889999999994 77888899999999999999999999999999999999999996543 4467889999
Q ss_pred HHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhH
Q 008913 99 VDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRL 178 (549)
Q Consensus 99 ~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl 178 (549)
+|++|++|++++|+++|+++++|.+|.||++|+++|+|+ ||++|++|++|++++.....+.......+.+++++|++|+
T Consensus 101 ~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl 179 (823)
T PLN03192 101 VDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRL 179 (823)
T ss_pred HHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999876555443322345678899999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhh
Q 008913 179 RRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSI 258 (549)
Q Consensus 179 ~ri~~~~~~l~~~~~~~~~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~ 258 (549)
.|+.+++.++++...+++.+.+++++++.+++++||+||+||+++......+++|++...+++.+.+++.+|+.|+||++
T Consensus 180 ~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai 259 (823)
T PLN03192 180 RRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSI 259 (823)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHH
Confidence 99999999999988888888999999999999999999999999976667788999876678888999999999999999
Q ss_pred hhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008913 259 VTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLA 338 (549)
Q Consensus 259 ~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~ 338 (549)
+|||||||||++|.|..|+++++++|++|++++||++|++++++.+.++++.+|+++++.+++||+++++|++||+||++
T Consensus 260 ~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~ 339 (823)
T PLN03192 260 TTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILA 339 (823)
T ss_pred HHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccHHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEE
Q 008913 339 HMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLY 418 (549)
Q Consensus 339 y~~~~~~~~~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly 418 (549)
|+++.|+.+..++++++++||++||.+++.+++.+.++++++|++++++++.+++..++.+.|+|||.|+.+||.++++|
T Consensus 340 y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY 419 (823)
T PLN03192 340 YMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVY 419 (823)
T ss_pred HHHHHHhhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEE
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHH
Q 008913 419 IVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQ 498 (549)
Q Consensus 419 ~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~ 498 (549)
||.+|.|+++...++++.++..+++|++|||.+++.+.|++++++|.+.|+++.|++++|.++++++|++...+++++.+
T Consensus 420 ~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 420 IVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred EEEecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999987667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHhh
Q 008913 499 YVKGLKQEM 507 (549)
Q Consensus 499 ~l~~~~~~~ 507 (549)
+.++.++..
T Consensus 500 ~~~~l~~l~ 508 (823)
T PLN03192 500 HHKELHDLN 508 (823)
T ss_pred Hhhhhcccc
Confidence 887776543
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-69 Score=524.72 Aligned_cols=421 Identities=24% Similarity=0.416 Sum_probs=380.1
Q ss_pred HHHHHHHHHHHhhhhhhcccccc---cchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhh
Q 008913 67 LVVLVVYSAWASPFELAFRKAAT---GSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMD 143 (549)
Q Consensus 67 ~~~~~~~~~~~ip~~~~f~~~~~---~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~D 143 (549)
+.+.++|+.++++.+.+|++-.. ..|..+|+++|++|++|++++.+++|++. |.+|.|.++.++||+.+..|.+|
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleq--GllV~~~~Kl~~hY~~s~~f~lD 80 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ--GLLVKDTSKLRKHYVHSTQFKLD 80 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--CeeehhhHHHHHHHHHhhhhhhh
Confidence 34568999999999999987653 34778999999999999999999999998 89999999999999999899999
Q ss_pred hhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008913 144 VASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLA 223 (549)
Q Consensus 144 lis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~~~~~~~~l~~l~~~~l~~~h~~acl~~~i~ 223 (549)
++|++|+++++.... .....|++|++|+.|+..++.+.+....... ..++.+++.++++++||.||+||+++
T Consensus 81 ~l~liP~D~l~~~~~-------~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn-~fri~~lv~~~~ilfHWNaClYf~iS 152 (536)
T KOG0500|consen 81 VLSLIPLDLLLFKDG-------SASLERLNRLLKIYRLFEFFDRTETRTTYPN-AFRISKLVHYCLILFHWNACLYFLIS 152 (536)
T ss_pred hhhhcchhHHhhcCC-------cchHHHHHHHHHHHHHHHHHHHhccccCCch-HHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 999999999875442 2345678999999999999988887666554 47899999999999999999999999
Q ss_pred hcccCCCCcccccccCCccc-----CchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008913 224 AHHKIPENTWIGSQVNDFKH-----RSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNM 298 (549)
Q Consensus 224 ~~~~~~~~~W~~~~~~~~~~-----~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i 298 (549)
...+...++|.+....+-.. .+...+|+.|+||+..|+||+| -...|.+..|..|.|+-.++|+++||.++|++
T Consensus 153 ~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~V 231 (536)
T KOG0500|consen 153 KAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNV 231 (536)
T ss_pred HhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccH
Confidence 98888888899864333333 3488999999999999999999 55789999999999999999999999999999
Q ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh-cccHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q 008913 299 TNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEK 377 (549)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~ 377 (549)
++++.+++....+|+++|+.+++||+.+++|..++.||.+||.|.|.++ -.+++++++.||+.|+.||+.+++.+.|++
T Consensus 232 GsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkk 311 (536)
T KOG0500|consen 232 GSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKK 311 (536)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998 678999999999999999999999999999
Q ss_pred hhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhc---
Q 008913 378 TYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIF--- 454 (549)
Q Consensus 378 ~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~--- 454 (549)
+++|+++++.++.+++..++++.|.|||+||++||.+.+||+|.+|.++|.. +||. .+...+++|++|||++++.
T Consensus 312 V~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~-dDg~-t~~~~L~~G~~FGEisIlni~g 389 (536)
T KOG0500|consen 312 VRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA-DDGV-TVFVTLKAGSVFGEISILNIKG 389 (536)
T ss_pred hhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe-cCCc-EEEEEecCCceeeeeEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999987 3443 3677899999999999874
Q ss_pred ---CCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHH
Q 008913 455 ---NIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYV 500 (549)
Q Consensus 455 ---~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l 500 (549)
+.+|++++++++++++++++++|+.+.+++||+....+.++-.+.|
T Consensus 390 ~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~kgr~iL 438 (536)
T KOG0500|consen 390 NKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEKGRQIL 438 (536)
T ss_pred cccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5679999999999999999999999999999999888886554444
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-71 Score=539.51 Aligned_cols=463 Identities=23% Similarity=0.399 Sum_probs=409.9
Q ss_pred CCcccccccccccCCCCCCCCcccccccccCCeEEcCCChhHHhHHHHHHHHHHHHHHHhhhhhhccccc--ccchhhHH
Q 008913 19 SSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIVD 96 (549)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~~--~~~~~~~~ 96 (549)
+.......-.++.+++|.+ ....++.++.+|.+++.|+.+||++++++.+|+++++||.++|.... ...|.++|
T Consensus 180 khS~la~vm~Lg~DilPQY----rQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvD 255 (971)
T KOG0501|consen 180 KHSNLAEVMQLGSDILPQY----RQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVD 255 (971)
T ss_pred cchhHHHHHHhccccchhh----hhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEec
Confidence 3344455667899999998 56688999999999999999999999999999999999999998765 55688999
Q ss_pred HHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 008913 97 LVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLW 176 (549)
Q Consensus 97 ~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrll 176 (549)
-++|++|++||++||+|.|+.++ |++|.||+.|+.+|+|+ ||++|++|++|++++..+-...-+-+..+..++..|++
T Consensus 256 SiVDVIF~vDIvLNFHTTFVGPg-GEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLL 333 (971)
T KOG0501|consen 256 SIVDVIFFVDIVLNFHTTFVGPG-GEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLL 333 (971)
T ss_pred chhhhhhhhhhhhhcceeeecCC-CceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999997 89999999999999999 99999999999999987766554445677788888888
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCCCcccccccCCc--------
Q 008913 177 RLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHK-------IPENTWIGSQVNDF-------- 241 (549)
Q Consensus 177 Rl~ri~~~~~~l~~~~~~~~~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~-------~~~~~W~~~~~~~~-------- 241 (549)
|+.|+.|-+++. +.+...-++.+++.+.+++||.||+||.++.++- ...++|+.....++
T Consensus 334 RLGRVaRKLD~Y-----lEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~ 408 (971)
T KOG0501|consen 334 RLGRVARKLDHY-----LEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNL 408 (971)
T ss_pred HHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceecc
Confidence 888888776543 3344567888999999999999999999997321 24568875322111
Q ss_pred -------ccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Q 008913 242 -------KHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRN 314 (549)
Q Consensus 242 -------~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~ 314 (549)
.+++....|+.|+||.++.|||||+|++.|.|..|++|++++|++|.++||.++|.++.+++++.+++.+|++
T Consensus 409 s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHe 488 (971)
T KOG0501|consen 409 SNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHE 488 (971)
T ss_pred CCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHH
Confidence 2345567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh-cccHHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 008913 315 AINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMV 393 (549)
Q Consensus 315 ~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~ 393 (549)
.++.+.+||+-.++|+.|.+||.+|.--.|... |.+.+++|...|..+|.+|+.+++++.+..+|-|+-.++.+++.|+
T Consensus 489 MlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLA 568 (971)
T KOG0501|consen 489 MLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALA 568 (971)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHH
Confidence 999999999999999999999999999999977 9999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcC--CCeeeEEEEcceEEEE
Q 008913 394 SEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFN--IPQPFTVRTKRLSQVI 471 (549)
Q Consensus 394 ~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~--~~~~~~v~a~~~~~l~ 471 (549)
..++...+.|||.|++.||..+.++||++|.++|.+ |+ .++..+++||.||+.---.+ ....++++|+++|.+.
T Consensus 569 m~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ--DD--EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH 644 (971)
T KOG0501|consen 569 MEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ--DD--EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLH 644 (971)
T ss_pred HHHHhccCCCcceeeecCCccceEEEEEecceEEee--cC--cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999999999987 33 37899999999997743322 2367899999999999
Q ss_pred EeCHHHHHhhhccCcchHHHHHHHH
Q 008913 472 RLSHHHLKQMVPIDHGDGKKIMNNF 496 (549)
Q Consensus 472 ~i~~~~f~~l~~~~p~~~~~~~~~~ 496 (549)
.|.++.+.+.++-|..+.+.+-+++
T Consensus 645 ~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 645 MIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhce
Confidence 9999999999988887777777765
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-63 Score=487.05 Aligned_cols=434 Identities=20% Similarity=0.377 Sum_probs=395.5
Q ss_pred CeEEcCCC-hhHHhHHHHHHHHHHHHHHHhhhhhhccccc---ccchhhHHHHHHHHHHhhhh-eeeeEeEEeCCCcEEE
Q 008913 50 KYVIAPYD-YRYRWWQTFLVVLVVYSAWASPFELAFRKAA---TGSLLIVDLVVDFFFAADII-FTFFVAYLDKSTYLLV 124 (549)
Q Consensus 50 ~~ii~P~s-~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~~---~~~~~~~~~~~~~if~~Di~-l~f~t~~~~~~~g~~i 124 (549)
.-.|+|+. +++..|-.++.++..|||++||++.+|..+. ...|++.|++||++|++|++ ++-+..|... |.+|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrg--G~~i 294 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRG--GDII 294 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeC--ceEE
Confidence 46799998 9999999999999999999999999998765 45688999999999999995 4555666665 8899
Q ss_pred echhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 008913 125 DDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKL 204 (549)
Q Consensus 125 ~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~~~~~~~~l~~l 204 (549)
.|.+..++||+++..|-+|++|++|+++++.++... .++|+.|++++.-...++..++..+.-.+ ..|+++.
T Consensus 295 k~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~-------p~wR~~R~lK~~sF~e~~~~Le~i~s~~y-~~RV~rT 366 (815)
T KOG0499|consen 295 KDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN-------PMWRANRMLKYTSFFEFNHHLESIMSKAY-IYRVIRT 366 (815)
T ss_pred EechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc-------hhhhhhhHHHHHHHHHHHHHHHHHhcchh-hhhhHHH
Confidence 999999999999989999999999999998877533 35688888888888888887776655443 5899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHH
Q 008913 205 ICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYM 284 (549)
Q Consensus 205 ~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~ 284 (549)
+.++++++|+.||+||+.+.+.+...+.|+....+ ..|+.|+|||+-|++|+| |...|+|..|.+|..+--
T Consensus 367 ~~YmlyilHinacvYY~~SayqglG~~rWVydg~G--------n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w 437 (815)
T KOG0499|consen 367 TGYLLYILHINACVYYWASAYQGLGTTRWVYDGEG--------NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNW 437 (815)
T ss_pred HHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCC--------CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHH
Confidence 99999999999999999999888899999987522 479999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh-cccHHHHHhhCCHHHH
Q 008913 285 LFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIR 363 (549)
Q Consensus 285 l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr 363 (549)
+.|+++|+.++|.|-.++...+.++..|+..|+..-.||++.++|.+.++||+.+|+|.|+++ .+|+.++|+.||..||
T Consensus 438 ~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq 517 (815)
T KOG0499|consen 438 FMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQ 517 (815)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhhe
Confidence 999999999999999999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecC
Q 008913 364 SSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGS 443 (549)
Q Consensus 364 ~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~ 443 (549)
.+++..++..++.++.+|++|+.+.+.++..+++.+.|.|||+||+.||.+.+||+|..|.|+|...++|. +++.++++
T Consensus 518 ~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~-~Vl~tL~~ 596 (815)
T KOG0499|consen 518 LDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT-KVLVTLKA 596 (815)
T ss_pred eeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC-EEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999865554 68899999
Q ss_pred CCeEechhhhc---CCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhh
Q 008913 444 ADMAGEIGVIF---NIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGL 503 (549)
Q Consensus 444 G~~fGe~~~l~---~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~ 503 (549)
|++|||++++. +.+|+++++|.++|.+++++++|+.+++..||+-...+.+...+.|+..
T Consensus 597 GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~n 659 (815)
T KOG0499|consen 597 GSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQN 659 (815)
T ss_pred cceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhc
Confidence 99999999874 5678999999999999999999999999999998888888877766553
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.3e-24 Score=208.90 Aligned_cols=246 Identities=20% Similarity=0.239 Sum_probs=167.1
Q ss_pred cccccccCCeEEcCCC-hhHHhHHHHHHHHHHHHHHHhhhhh--hccc-----------------ccccchhhHHHHHHH
Q 008913 42 DEGHLRLKKYVIAPYD-YRYRWWQTFLVVLVVYSAWASPFEL--AFRK-----------------AATGSLLIVDLVVDF 101 (549)
Q Consensus 42 ~~~~~~~~~~ii~P~s-~~~~~W~~~~~~~~~~~~~~ip~~~--~f~~-----------------~~~~~~~~~~~~~~~ 101 (549)
...+++.+..+-.|+| ....+..++.++.++.+++.+-+.. .|.. .....+.++|.+|.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 4456777788899995 4555666666666666655554443 1211 123458899999999
Q ss_pred HHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCC---CCC----cchhhHHHHHH
Q 008913 102 FFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQ---LHD----GRVFGFLNLLR 174 (549)
Q Consensus 102 if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~---~~~----~~~~~~l~llr 174 (549)
+|.+|+++||..+ |. +.+|+|++-+++|++|++||++-.....-. ..+ +..++++|++|
T Consensus 252 WFT~E~llR~~~~------------P~--k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lR 317 (477)
T KOG3713|consen 252 WFTFEYLLRFLVA------------PN--KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLR 317 (477)
T ss_pred HHHHHHHHHHHcC------------ch--HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHH
Confidence 9999999999765 22 388999999999999999998654332111 100 12233444444
Q ss_pred HHhHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHH
Q 008913 175 LWRLRRVGELFTRLEKDI-RFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYS 253 (549)
Q Consensus 175 llRl~ri~~~~~~l~~~~-~~~~~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~s 253 (549)
++|++|+.|....++... .+......+..+++.+.+-+-++|.+-|+++...+ .+.+.+...+
T Consensus 318 I~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~----------------~~~FtSIPa~ 381 (477)
T KOG3713|consen 318 ILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEP----------------DTKFTSIPAG 381 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----------------CCCCccccch
Confidence 444444444433333221 12222344555556666666778888888885222 2236778889
Q ss_pred HHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 008913 254 IYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAIN 317 (549)
Q Consensus 254 ly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~ 317 (549)
+|||++|||||||||++|.|..+++++..++++|+++.|+.|..|.+-+...++..++.++...
T Consensus 382 ~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~ 445 (477)
T KOG3713|consen 382 FWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPK 445 (477)
T ss_pred hheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998877766665555444443
No 7
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.3e-20 Score=182.37 Aligned_cols=272 Identities=16% Similarity=0.223 Sum_probs=175.4
Q ss_pred cccCCeEEcCCChhHHhHHHHHHHHHHHHHHHhhhhhhccc---ccccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcE
Q 008913 46 LRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRK---AATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYL 122 (549)
Q Consensus 46 ~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~---~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~ 122 (549)
-+.+++.-.|.+.....++++++++++.+.+.-.+. .+.+ .....+++++++.-++|.+|+++|++.+-++.+
T Consensus 79 ~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~S-Ti~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r--- 154 (654)
T KOG1419|consen 79 NKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLS-TIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR--- 154 (654)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---
Confidence 456778899999988889988877776665544433 3322 225668899999999999999999997755432
Q ss_pred EEechhHHHHHhhccchhhhhhhccchHHHHHHH-hcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHH
Q 008913 123 LVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRI-FTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRL 201 (549)
Q Consensus 123 ~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~-~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~~~~~~~~l 201 (549)
.-...-+.+|.+++..++|++.++........ ..++...+..++-+|++.++|++|+-|--..++-...+.+.-.+-
T Consensus 155 --YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~E 232 (654)
T KOG1419|consen 155 --YRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKE 232 (654)
T ss_pred --cccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHH
Confidence 11112246788988999999876655332211 112222234455566666666666655443332222222211222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHH
Q 008913 202 SKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNM 281 (549)
Q Consensus 202 ~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i 281 (549)
+....++.++..+++..+.|++.-+.. +......+..|.+|+||.++|+|||||||.+|+|+.+++++.
T Consensus 233 LiTt~YIGFL~LIfsSflVYLaEKd~~-----------~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa 301 (654)
T KOG1419|consen 233 LITTWYIGFLVLIFSSFLVYLAEKDAQ-----------GEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAA 301 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-----------cccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHH
Confidence 223333333444444444444432211 113345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008913 282 LYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (549)
Q Consensus 282 ~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~ 341 (549)
++.++|+.+||..-|.+++-++-.-+++ +.-++|-+.++.-..|.+-.-+||.
T Consensus 302 ~fsligiSFFALPAGILGSGfALKVQeq-------~RQKHf~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 302 CFSLIGISFFALPAGILGSGFALKVQEQ-------HRQKHFNRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HHHHHHHHHHhcccccccchhhhhhHHH-------HHHHHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999988765432221 1224555667777777777777764
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.6e-20 Score=176.03 Aligned_cols=185 Identities=19% Similarity=0.327 Sum_probs=129.2
Q ss_pred ccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCC-C------
Q 008913 89 TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQ-L------ 161 (549)
Q Consensus 89 ~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~-~------ 161 (549)
..++++++.+|-++|.+++++||+.+ | ...-+.|+...++|+++++|+++........ .
T Consensus 252 ~dPFFiVEt~CIiWFtfEllvRf~aC------------P--sK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~g 317 (507)
T KOG1545|consen 252 TDPFFIVETLCIIWFTFELLVRFFAC------------P--SKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQG 317 (507)
T ss_pred CCchHhHHHHHHHHHhHHHHHHHhcC------------c--cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccc
Confidence 34588999999999999999999876 1 1256788878999999999998754322111 0
Q ss_pred CCcchhhHHHHHHHHhHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccc
Q 008913 162 HDGRVFGFLNLLRLWRLRRVGELFTRLEKD----IRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQ 237 (549)
Q Consensus 162 ~~~~~~~~l~llrllRl~ri~~~~~~l~~~----~~~~~~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~ 237 (549)
.+.-.+.++|++|+.|++|++++-++-+.. ..+...+..+..+++.+++-+.+++...|+.+..
T Consensus 318 qqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEad------------ 385 (507)
T KOG1545|consen 318 QQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEAD------------ 385 (507)
T ss_pred hhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecC------------
Confidence 112345677777777777776654432211 1122233445555555555455555555544321
Q ss_pred cCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 238 VNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (549)
Q Consensus 238 ~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~ 303 (549)
+..+.+.+..+|+|||++|||||||||..|.|..++++..++.+.|++-.|+.+..|.+-+.
T Consensus 386 ----e~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 386 ----EPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred ----CCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 23455667888999999999999999999999999999999999999999998877755443
No 9
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.69 E-value=4.2e-16 Score=149.28 Aligned_cols=135 Identities=18% Similarity=0.264 Sum_probs=125.9
Q ss_pred HHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhh
Q 008913 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGV 452 (549)
Q Consensus 373 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~ 452 (549)
+.++..++|+.++++.+..+....+.+.|++|+.|+++|+.++.+|+|.+|.|+++...+|++.++..+++|++||+.++
T Consensus 7 ~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~ 86 (236)
T PRK09392 7 IRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAV 86 (236)
T ss_pred HHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHH
Confidence 57889999999999999999999999999999999999999999999999999999866777888999999999999999
Q ss_pred hcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 453 IFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 453 l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
+.+.++.++++|.++|+++.+++++|.+++.++|.+...+.+.+.+++....++.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~ 141 (236)
T PRK09392 87 VLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSL 141 (236)
T ss_pred hCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888776665443
No 10
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=3.8e-16 Score=154.04 Aligned_cols=158 Identities=17% Similarity=0.274 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCC
Q 008913 365 SISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSA 444 (549)
Q Consensus 365 ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G 444 (549)
.=..++.++.+.+..++++++...+++++.+|.+..|.+|+.|+++||+++++|++.+|.++|.. +|+ .+..+++|
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~--ll~~m~~g 221 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK--LLGKMGAG 221 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe--eeeccCCc
Confidence 34457788999999999999999999999999999999999999999999999999999999986 554 78999999
Q ss_pred CeEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhhcchHHHHHhhccccc
Q 008913 445 DMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIE 524 (549)
Q Consensus 445 ~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~ 524 (549)
..|||.+++.+++|+++++|+++|.+|.|+|+.|+.++...-...+.-..++.+....+++.-.+.+..+.+.+..+-++
T Consensus 222 tvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd 301 (732)
T KOG0614|consen 222 TVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYD 301 (732)
T ss_pred hhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999988766666666677776677777777788888888887776
Q ss_pred cc
Q 008913 525 IT 526 (549)
Q Consensus 525 ~~ 526 (549)
.+
T Consensus 302 ~g 303 (732)
T KOG0614|consen 302 AG 303 (732)
T ss_pred CC
Confidence 54
No 11
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.61 E-value=8.2e-17 Score=159.35 Aligned_cols=287 Identities=18% Similarity=0.249 Sum_probs=180.9
Q ss_pred ccccCCeEEcCCChhHHhHHHHHHHHHHHHHHHhhhhhhccccc------ccchhhHHHHHHHHHHhhhheeeeEeEEeC
Q 008913 45 HLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA------TGSLLIVDLVVDFFFAADIIFTFFVAYLDK 118 (549)
Q Consensus 45 ~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~~------~~~~~~~~~~~~~if~~Di~l~f~t~~~~~ 118 (549)
.+.|..-+|.-.+-..++--.+++++.+-+.++..+..++.... ...-..+|+.++++|++-+++||..+
T Consensus 111 akdwagelisgqtltgr~lvvlvfilsigsliiyf~das~~~ve~cq~w~~~~tqqidlafnifflvyffirfiaa---- 186 (1103)
T KOG1420|consen 111 AKDWAGELISGQTLTGRVLVVLVFILSIGSLIIYFIDASNPIVETCQNWYKDFTQQIDLAFNIFFLVYFFIRFIAA---- 186 (1103)
T ss_pred ehhhhcceeecccccceeeehhHHHHhhhceEEEEEcCCChHHHhhhhhhhChHHHhhhHhhHHHHHHHHHHHhhc----
Confidence 34455566777766665544444444444433322222232211 12235699999999999999999876
Q ss_pred CCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhhHHHHH
Q 008913 119 STYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFI 198 (549)
Q Consensus 119 ~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~~~~~~ 198 (549)
.|. ..++-..+.++|++.+-|.++.+... +.+--+|++|.+|+..+..+++.+.-....+.
T Consensus 187 ------sdk----lwf~lemys~vdfftippsfvsiyl~-------r~wlglrflralrlmtvpdilqylnilktsss-- 247 (1103)
T KOG1420|consen 187 ------SDK----LWFWLEMYSVVDFFTIPPSFVSIYLN-------RSWLGLRFLRALRLMTVPDILQYLNILKTSSS-- 247 (1103)
T ss_pred ------ccc----eeeeeehhhheeeeecCchheEEEec-------cchHHHHHHHHHHhccHHHHHHHHHHHhccch--
Confidence 111 23333335667777777765533221 22223566666666665555554433222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHH
Q 008913 199 TRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKV 278 (549)
Q Consensus 199 ~~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~ 278 (549)
+++..++.+++.+..-.|.+.++++ +..+.|-+-+ .+..-.|..+.|+.++||+||||||+...|..+++
T Consensus 248 irl~qlvsifisvwltaag~ihlle----nsgdp~~~f~------n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrl 317 (1103)
T KOG1420|consen 248 IRLVQLVSIFISVWLTAAGFIHLLE----NSGDPWENFQ------NNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRL 317 (1103)
T ss_pred hhHHHHHHHHHHHHHhhcceeehhh----cCCChhHhcc------CcccchhhheeeeeEEEeeeccccceeehhhhhHH
Confidence 5666666666555555566666555 3445553321 12235799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH-------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008913 279 FNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNA-------------INEILRYGSKNRLPEGLREQMLAHMQLRFK 345 (549)
Q Consensus 279 ~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~ 345 (549)
|.++++++|..+||..+..|..++.+.++...+|+.. .+.+.+|++ +|+ .+
T Consensus 318 fmvffil~glamfasyvpeiielignr~kyggeyk~ehgkkhivvcghityesvshflk-------------dfl---he 381 (1103)
T KOG1420|consen 318 FMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGKKHIVVCGHITYESVSHFLK-------------DFL---HE 381 (1103)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCCeeEEEecceeHHHHHHHHH-------------HHh---hc
Confidence 9999999999999999999999998877655555432 223333332 221 11
Q ss_pred hh-ccc-HHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 008913 346 TA-ELQ-QEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQG 383 (549)
Q Consensus 346 ~~-~~~-~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~ 383 (549)
.. ..+ +--+|+..||.|..| .+++....++.+|++
T Consensus 382 drddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 382 DRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred cccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 11 222 445788999999877 678888889999975
No 12
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.61 E-value=1.5e-14 Score=136.10 Aligned_cols=125 Identities=22% Similarity=0.344 Sum_probs=114.4
Q ss_pred cCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcCC-Cee
Q 008913 382 QGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNI-PQP 459 (549)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~~-~~~ 459 (549)
+.++++.++.++..++.+.|++|++|+.+|++++.+|+|.+|.++++.. .+|++..+..+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 5689999999999999999999999999999999999999999999873 56888899999999999999988864 688
Q ss_pred eEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHh
Q 008913 460 FTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (549)
Q Consensus 460 ~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 506 (549)
++++|.++|+++.+++++|.++++++|++...+.+.+.+++.....+
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 132 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRK 132 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999888888665544
No 13
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.60 E-value=2e-15 Score=140.41 Aligned_cols=192 Identities=21% Similarity=0.305 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCC-cchhhHHHH
Q 008913 94 IVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHD-GRVFGFLNL 172 (549)
Q Consensus 94 ~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~-~~~~~~l~l 172 (549)
++|.+++++|.+|+++++++.... +++|++++|+++|+++++|.............+ ....+++++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 478999999999999999976211 578999989999999999995543222111100 013445555
Q ss_pred HHHHhHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHH
Q 008913 173 LRLWRLRRVGELFTRLEKDI-RFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYT 251 (549)
Q Consensus 173 lrllRl~ri~~~~~~l~~~~-~~~~~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~ 251 (549)
+|++|++|+.+..+.+.... .......++.+++..++++.|..||+++.+..........+.....++..+.+.+++|.
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 147 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFG 147 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccc
Confidence 55555555554444333321 12233456788888888999999999998886433322221122223445667788999
Q ss_pred HHHHhhhhhhhcccccccccC-----CchhHHHH-HHHHHHHHHHHHHHHHHH
Q 008913 252 YSIYWSIVTLTTVGYGDLHAV-----NTGEKVFN-MLYMLFNIGLTAYIIGNM 298 (549)
Q Consensus 252 ~sly~a~~t~ttvGygdi~p~-----t~~e~~~~-i~~~l~g~~~~a~~i~~i 298 (549)
.|+||++.++|+.||||..|. +..+.++. ++..+++++++++++|.|
T Consensus 148 ~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 148 ESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999999999999999987 88888888 566666678888888764
No 14
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.57 E-value=2.2e-14 Score=120.32 Aligned_cols=113 Identities=27% Similarity=0.474 Sum_probs=104.4
Q ss_pred hccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcCCCe
Q 008913 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQ 458 (549)
Q Consensus 380 ~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~~~~ 458 (549)
+|+.++++.+..++..++.+.+.+|++|+.+|+..+++|+|.+|.++++.. ++|++..+..+.+|++||+.+++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 478899999999999999999999999999999999999999999999873 4567788999999999999999988899
Q ss_pred eeEEEEcceEEEEEeCHHHHHhhhccCcchHHHH
Q 008913 459 PFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKI 492 (549)
Q Consensus 459 ~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~ 492 (549)
..+++|.++|+++.+++++|.++++++|++...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999876554
No 15
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.54 E-value=4.6e-14 Score=133.94 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=104.3
Q ss_pred HHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceE
Q 008913 390 AQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLS 468 (549)
Q Consensus 390 ~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~ 468 (549)
.++....+.+.|++|++|+.+||+++++|+|.+|.|+++. ..+|++.++..+.+|++||+.+++.+.++.++++|.++|
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~ 104 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEEC 104 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccE
Confidence 4577788899999999999999999999999999999987 457888899999999999999999999999999999999
Q ss_pred EEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHh
Q 008913 469 QVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (549)
Q Consensus 469 ~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~ 502 (549)
+++.+++++|.+++.++|.+...+++.+.+++..
T Consensus 105 ~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~ 138 (226)
T PRK10402 105 WCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYR 138 (226)
T ss_pred EEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888877644
No 16
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.53 E-value=5.5e-17 Score=153.67 Aligned_cols=182 Identities=18% Similarity=0.314 Sum_probs=127.4
Q ss_pred chhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCCcchhhHH
Q 008913 91 SLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFL 170 (549)
Q Consensus 91 ~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l 170 (549)
.++.+|..+.++|..+++++++.+ ..+.+++|+...++|+++++|+++-... +++-.-+..+.-+
T Consensus 228 aFFclDTACVmIFT~EYlLRL~aA--------------PsR~rF~RSvMSiIDVvAIlPYYigLv~-t~N~DVSGaFVTL 292 (632)
T KOG4390|consen 228 AFFCLDTACVMIFTGEYLLRLFAA--------------PSRYRFLRSVMSIIDVVAILPYYIGLVM-TDNEDVSGAFVTL 292 (632)
T ss_pred eeEEecceeEEEeeHHHHHHHHcC--------------chHHHHHHHHHHHHHHhhhhhhheEEEe-cCCccccceeEEE
Confidence 467799999999999999999877 2358899998899999999999864332 2221112233334
Q ss_pred HHHHHHhHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhh
Q 008913 171 NLLRLWRLRRVGELFTRLEK-DIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLG 249 (549)
Q Consensus 171 ~llrllRl~ri~~~~~~l~~-~~~~~~~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~ 249 (549)
|++|++|+++..|--+.++- .+.+..-...+.-+++.+...+.++|.++||.+.. .+.+.+..
T Consensus 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg----------------~~at~FTs 356 (632)
T KOG4390|consen 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKG----------------SSATKFTS 356 (632)
T ss_pred EeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc----------------cccccccc
Confidence 44444444433332222221 11222223455666677777777888888887742 23455667
Q ss_pred HHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (549)
Q Consensus 250 Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~ 303 (549)
...|+|+.++||||.||||.+|.|..+++|..++.+.|+++.|+.+..|.+-+.
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFS 410 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFS 410 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechh
Confidence 788999999999999999999999999999999999999999886655544433
No 17
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.52 E-value=5.1e-14 Score=113.06 Aligned_cols=89 Identities=30% Similarity=0.460 Sum_probs=82.6
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEec-CCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHH
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHH 477 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~-~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~ 477 (549)
+.|++|++|+++|+.++++|+|++|.++++... +++...+..+++|++||+.+++.+.++.++++|.++|+++.|++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 81 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRED 81 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHH
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHH
Confidence 679999999999999999999999999999854 4555568999999999999999999999999999999999999999
Q ss_pred HHhhhccCcc
Q 008913 478 LKQMVPIDHG 487 (549)
Q Consensus 478 f~~l~~~~p~ 487 (549)
|.++++++|+
T Consensus 82 ~~~~~~~~p~ 91 (91)
T PF00027_consen 82 FLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHSHH
T ss_pred HHHHHHhCcC
Confidence 9999999985
No 18
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.51 E-value=2.4e-13 Score=127.85 Aligned_cols=133 Identities=15% Similarity=0.267 Sum_probs=118.7
Q ss_pred hhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcC
Q 008913 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFN 455 (549)
Q Consensus 377 ~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~ 455 (549)
..+.|...++.....+....+.+.+++|++|+.+||+++.+|+|.+|.++++.. .+|++..+..+++|++||+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~ 83 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGG 83 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcC
Confidence 455666677777777778899999999999999999999999999999999984 4688889999999999999999998
Q ss_pred CCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhh
Q 008913 456 IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLD 509 (549)
Q Consensus 456 ~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 509 (549)
.++.++++|.++|+++.+++++|.+++.++|.....+++.+.++++........
T Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~~~ 137 (214)
T COG0664 84 DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLSL 137 (214)
T ss_pred CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998889999999999999888777655443
No 19
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=9.1e-14 Score=131.70 Aligned_cols=129 Identities=21% Similarity=0.396 Sum_probs=113.4
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechh
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~ 451 (549)
...+++.-+|++++++.+.++...|..+.+..|+.|++||+.++.+|+|.+|.++|+. +|+ .+..+.+|+.|||++
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv--~~~--~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV--NGT--YVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE--CCe--EEeeeCCCCchhhhH
Confidence 4567778899999999999999999999999999999999999999999999999998 443 688999999999999
Q ss_pred hhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhh
Q 008913 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (549)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~ 504 (549)
++.+.||.+|+.|.+++.+|.|++..|..++-.+..-..+++..+.+....+.
T Consensus 197 Lmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~ 249 (368)
T KOG1113|consen 197 LMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILE 249 (368)
T ss_pred hhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhH
Confidence 99999999999999999999999999999988886555556555554443333
No 20
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.49 E-value=4.1e-13 Score=128.50 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=113.1
Q ss_pred HhhhhhccCCCHHHHHHHHhcccc-cccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhh
Q 008913 375 VEKTYLFQGVSVDLIAQMVSEMKA-EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGV 452 (549)
Q Consensus 375 l~~~~~f~~~~~~~l~~l~~~~~~-~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~ 452 (549)
+++.+.|..++++.+..|....+. +.|++|+.|+.+||.++++|+|.+|.|+++.. ++|++.++..+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 445555557999999999988864 67999999999999999999999999999984 5788888999999999998766
Q ss_pred hcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHh
Q 008913 453 IFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (549)
Q Consensus 453 l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 506 (549)
+. .++..+++|.++|+++.+++++|.+++.++|++...+++.+.+++......
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEM 147 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 54 455678999999999999999999999999999999999988877655443
No 21
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.47 E-value=5.8e-13 Score=112.31 Aligned_cols=114 Identities=22% Similarity=0.407 Sum_probs=102.6
Q ss_pred hccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhh--cCC
Q 008913 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVI--FNI 456 (549)
Q Consensus 380 ~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l--~~~ 456 (549)
+|.+++++.++.++..++.+.+.+|++|+++|+..+.+|+|.+|.++++.. .+|.+..+..+.+|+.||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 478899999999999999999999999999999999999999999999874 46777789999999999999988 456
Q ss_pred CeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHH
Q 008913 457 PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIM 493 (549)
Q Consensus 457 ~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~ 493 (549)
+...+++|.++|+++.++.+++.+.+.++|......+
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 7889999999999999999999999999987655544
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.46 E-value=8e-13 Score=132.72 Aligned_cols=136 Identities=13% Similarity=0.245 Sum_probs=126.2
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechh
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~ 451 (549)
.+++.++|.|+.++++.+.+|...+....|.+||.|+..|.+.+++|+|.+|.|++.. ++|. ++..+..||.||..+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~-~~g~--v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS-DGGE--VLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc-CCCe--eeeeeccCccccchh
Confidence 4678899999999999999999999999999999999999999999999999999986 3443 789999999999999
Q ss_pred hhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhhc
Q 008913 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDE 510 (549)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 510 (549)
+++..+....+.|.+++.+|.|+++.|.++++++|+++.++....++|++++.++..+.
T Consensus 83 l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq 141 (610)
T COG2905 83 LFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQ 141 (610)
T ss_pred hcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999888899999999999999999999999999999999999999999877776664
No 23
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.39 E-value=2.9e-12 Score=118.64 Aligned_cols=104 Identities=12% Similarity=0.195 Sum_probs=93.6
Q ss_pred CCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCC--eeeEEEEcceEEEEEeCHHHHHh
Q 008913 404 KVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIP--QPFTVRTKRLSQVIRLSHHHLKQ 480 (549)
Q Consensus 404 ~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~--~~~~v~a~~~~~l~~i~~~~f~~ 480 (549)
|+.|+++||+++++|+|.+|.|+++. .++|++.++..+++|++||+.+++.+.+ +.++++|.++|+++.+++++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 68999999999999999999999987 4578888899999999999999998775 35789999999999999999999
Q ss_pred hhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 481 MVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 481 l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
+++++|++...+++.+.+++.......
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~~~~ 107 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTEMMI 107 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887665443
No 24
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.37 E-value=5.5e-12 Score=119.97 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=101.0
Q ss_pred HHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEE
Q 008913 391 QMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQ 469 (549)
Q Consensus 391 ~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~ 469 (549)
.++...+.+.|++|++|+.+||.++++|+|.+|.|+++. ..+|++.++..+.+|++||+. .+.++.++++|.++|+
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT 109 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence 445566789999999999999999999999999999997 457888889999999999964 4667889999999999
Q ss_pred EEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 470 VIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 470 l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
++.+++++|++++.++|++...+++.+.++++...+.+
T Consensus 110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~ 147 (230)
T PRK09391 110 VRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHM 147 (230)
T ss_pred EEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887655543
No 25
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.33 E-value=2e-12 Score=128.09 Aligned_cols=122 Identities=18% Similarity=0.250 Sum_probs=109.9
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecC--CceeeeEEecCCCe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKN--GAEQFLTKLGSADM 446 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~--~~~~~~~~l~~G~~ 446 (549)
..+..+|+.+|+|++++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+....+ +.+..+..+++||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 4567889999999999999999999999999999999999999999999999999999988443 34566899999999
Q ss_pred EechhhhcCCCeeeEEEEcce-EEEEEeCHHHHHhhhccCcchHH
Q 008913 447 AGEIGVIFNIPQPFTVRTKRL-SQVIRLSHHHLKQMVPIDHGDGK 490 (549)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~-~~l~~i~~~~f~~l~~~~p~~~~ 490 (549)
|||.+++....|++++.|..+ ++++.|+++.|.+++-...+..+
T Consensus 348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~e 392 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE 392 (732)
T ss_pred hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence 999999999999999999887 99999999999998876654443
No 26
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.33 E-value=1.6e-11 Score=126.83 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=104.8
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechh
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~ 451 (549)
.+.++++++|++++++.+++++..++.+.|++||+|+++||.++.+|+|.+|.|+++....+.+..+..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 3567899999999999999999999999999999999999999999999999999988443336788899999999975
Q ss_pred hhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHH
Q 008913 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKK 491 (549)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~ 491 (549)
+.+.++.++++|.++|+++.|+++.|..+...++-..++
T Consensus 86 -l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~~ 124 (413)
T PLN02868 86 -LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSDK 124 (413)
T ss_pred -hCCCCcccEEEECCCEEEEEEcHHHHhhhcccccccccC
Confidence 678889999999999999999999999988877644333
No 27
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.31 E-value=1.6e-11 Score=95.45 Aligned_cols=56 Identities=32% Similarity=0.670 Sum_probs=50.0
Q ss_pred hhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (549)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~ 303 (549)
.+|.+|+||+++|+||+||||+.|.+..+|+++++.+++|+.++++.++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999988764
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.27 E-value=4.8e-11 Score=111.32 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=88.3
Q ss_pred cccccccCCCCEEEecCC--CCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEE
Q 008913 395 EMKAEYFPPKVEIILQNE--IPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVI 471 (549)
Q Consensus 395 ~~~~~~~~~~e~I~~~g~--~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~ 471 (549)
.++.+.|++|++|+.+|| +++.+|+|++|.|+++. ..+|++.++..+.+|++||+.+++ +.+++++++|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 467788999999999999 77999999999999987 467899999999999999997654 57889999999999999
Q ss_pred EeCHHHHHhhhccCcchHHHHHHHHHHHHHhhh
Q 008913 472 RLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (549)
Q Consensus 472 ~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~ 504 (549)
.+++++| +|++...+++.+.+++....
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~~ 110 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARAY 110 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHHH
Confidence 9999987 56777777777766665543
No 29
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=1.8e-10 Score=109.60 Aligned_cols=114 Identities=20% Similarity=0.342 Sum_probs=105.3
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
.+|.+.|+++|+++.+.......++..+..+.|.+|+.|+.+|++++.+|+|.+|.|.+....+| ..+ .++.|++||
T Consensus 236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~v-kl~~~dyfg 312 (368)
T KOG1113|consen 236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VEV-KLKKGDYFG 312 (368)
T ss_pred hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eEE-Eechhhhcc
Confidence 67889999999999999999999999999999999999999999999999999999999864444 344 999999999
Q ss_pred chhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccC
Q 008913 449 EIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPID 485 (549)
Q Consensus 449 e~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~ 485 (549)
|.+++.+.||.+++.|.+...+..++++.|+.++.--
T Consensus 313 e~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 313 ELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9999999999999999999999999999999998643
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.91 E-value=2.9e-08 Score=100.76 Aligned_cols=55 Identities=29% Similarity=0.547 Sum_probs=50.6
Q ss_pred hhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302 (549)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~ 302 (549)
..+.+|+||+++|+|||||||+.|.|..+++++++++++|+.++++.++.+..-+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999988876543
No 31
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-07 Score=100.13 Aligned_cols=166 Identities=12% Similarity=0.106 Sum_probs=97.4
Q ss_pred CCCCCcccccccccCCeEEcCCChhHH---------hHHHHHHHHHHHHHHHhhhhhhccccc--ccchh-hHHHHHHHH
Q 008913 35 PAFGTVVDEGHLRLKKYVIAPYDYRYR---------WWQTFLVVLVVYSAWASPFELAFRKAA--TGSLL-IVDLVVDFF 102 (549)
Q Consensus 35 ~~~~~~~~~~~~~~~~~ii~P~s~~~~---------~W~~~~~~~~~~~~~~ip~~~~f~~~~--~~~~~-~~~~~~~~i 102 (549)
.++...+.+-+-.|..+++.|.++|+. .+|.++++++++|++++..+-.-.... +..+. .-++++.++
T Consensus 1089 ~~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaI 1168 (1956)
T KOG2302|consen 1089 TRYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAI 1168 (1956)
T ss_pred cccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHH
Confidence 333334455556677899999998875 577788888999999887764221211 22233 345999999
Q ss_pred HHhhhheeeeEe-EEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHH
Q 008913 103 FAADIIFTFFVA-YLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRV 181 (549)
Q Consensus 103 f~~Di~l~f~t~-~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri 181 (549)
|+.|+.++...- .+-. + ..|+++.|..+|.+-.+-..+-+.....+....+.++.+|.+|++|-+|.
T Consensus 1169 fV~Em~lKVVALGl~fg---e---------~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRp 1236 (1956)
T KOG2302|consen 1169 FVVEMTLKVVALGLYFG---E---------QAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRP 1236 (1956)
T ss_pred HHHHHHHHHHhhhhccc---h---------HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH
Confidence 999999886632 1111 1 78999989999976554332222222222211245556666666666666
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008913 182 GELFTRLEKDIRFTYFITRLSKLICVTLFAV 212 (549)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~l~~l~~~~l~~~ 212 (549)
+|.+.+.....-+...+.+.++.+..+++++
T Consensus 1237 LRviSra~glklVveTL~sSLkpIgnIvlic 1267 (1956)
T KOG2302|consen 1237 LRVISRAPGLKLVVETLISSLKPIGNIVLIC 1267 (1956)
T ss_pred HHHHhhcccHHHHHHHHHhccccHHHHHHHH
Confidence 6666554433333333344445554444433
No 32
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.58 E-value=4.4e-08 Score=103.27 Aligned_cols=117 Identities=16% Similarity=0.286 Sum_probs=103.2
Q ss_pred HHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcCCCeeeEEEEc
Q 008913 387 DLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465 (549)
Q Consensus 387 ~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~ 465 (549)
.+++.+-..+......||+.+++|||..+.+|+|++|+++-... .+|+...+..++.||.+|+.+.+++.+|..|+.|.
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av 578 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV 578 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence 34566667778899999999999999999999999999987664 34555589999999999999999999999999999
Q ss_pred ceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhh
Q 008913 466 RLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGL 503 (549)
Q Consensus 466 ~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~ 503 (549)
.++++.+||..-|..+..+||+...++.+.+.++.-..
T Consensus 579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g~ 616 (1158)
T KOG2968|consen 579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILGS 616 (1158)
T ss_pred eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999988888887776433
No 33
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.52 E-value=1.1e-07 Score=71.58 Aligned_cols=46 Identities=20% Similarity=0.513 Sum_probs=40.9
Q ss_pred ccccccCCeEEcCCChhHHhHHHHHHHHHHHHHHHhhhhhhccccc
Q 008913 43 EGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA 88 (549)
Q Consensus 43 ~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~~ 88 (549)
+++.+...++|||+|.++.+||++++++++++++++|+.++|..+.
T Consensus 29 ~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 29 ERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred HHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 3455667899999999999999999999999999999999997654
No 34
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.43 E-value=5e-06 Score=82.26 Aligned_cols=92 Identities=13% Similarity=0.270 Sum_probs=75.9
Q ss_pred hhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHh
Q 008913 246 IWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSK 325 (549)
Q Consensus 246 ~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (549)
....|..|+|....|..++||||++|.|.-++..+++.-++|.++.|.+++.++.-+ +..+--.++++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999999999886544 333444578888888
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 008913 326 NRLPEGLREQMLAHMQLRFK 345 (549)
Q Consensus 326 ~~i~~~l~~rv~~y~~~~~~ 345 (549)
.++.+++++-..+-++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888877776666665554
No 35
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.15 E-value=1.2e-05 Score=79.62 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC-----CcccccccCCcccCchhhhHHHHHHhhhhhhhcccccc--cccCCchhH
Q 008913 205 ICVTLFAVHSAGCFYFYLAAHHKIPE-----NTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGD--LHAVNTGEK 277 (549)
Q Consensus 205 ~~~~l~~~h~~acl~~~i~~~~~~~~-----~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygd--i~p~t~~e~ 277 (549)
++..++..-++|++||.++...++-. ..|.. .......+..|++|++.|+||+|||. ++|..+...
T Consensus 42 ~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-------Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~ 114 (336)
T PF01007_consen 42 VLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-------CVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAI 114 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-------SECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-------ceecccchhhheeEEEEEEEEeccCCcccCCCcchhH
Confidence 34445555678999999886433211 11110 01223579999999999999999998 578888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 008913 278 VFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (549)
Q Consensus 278 ~~~i~~~l~g~~~~a~~i~~i~~~~~~~~ 306 (549)
++.++-+++|+++.|+++|.+-+-+....
T Consensus 115 ~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 115 FLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999977776543
No 36
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.84 E-value=8.9e-05 Score=79.09 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=96.2
Q ss_pred HHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEe-chhhh---cCCC---eeeEE
Q 008913 391 QMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAG-EIGVI---FNIP---QPFTV 462 (549)
Q Consensus 391 ~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fG-e~~~l---~~~~---~~~~v 462 (549)
+++.+++...+..|++|++.|++.+.+|.+.+|..+|+. ..+|++..+....+|+.|- -.+++ .+.| +...+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~a 189 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAA 189 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeee
Confidence 444788889999999999999999999999999999886 4578888999999997655 44443 3444 56788
Q ss_pred EEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHh
Q 008913 463 RTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (549)
Q Consensus 463 ~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~ 502 (549)
+|.++|.+..++.+.|.+...++|+-...+++.+..|++.
T Consensus 190 kA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~ 229 (1158)
T KOG2968|consen 190 KAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQR 229 (1158)
T ss_pred eeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888866
No 37
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00011 Score=76.80 Aligned_cols=56 Identities=25% Similarity=0.626 Sum_probs=52.8
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~ 304 (549)
.+..|+|++.+++||+|||++.|.|..+++++|+..++|+-++..+++.++..+..
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999887754
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.77 E-value=0.00066 Score=61.85 Aligned_cols=105 Identities=7% Similarity=0.083 Sum_probs=80.6
Q ss_pred HHHHHHhcccccccCCCCEE-EecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcc
Q 008913 388 LIAQMVSEMKAEYFPPKVEI-ILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKR 466 (549)
Q Consensus 388 ~l~~l~~~~~~~~~~~~e~I-~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~ 466 (549)
....+....+...+.+|..+ ..+.+....++++.+|.+.+. ..|| ..+.+..+...||-...+.+....+.++|.+
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~ 90 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEG 90 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eEEEeccCCeEeecccccCCCCceEEEEEcC
Confidence 34566667778889999997 444444467999999999994 3343 5778888999999877666666678999999
Q ss_pred eEEEEEeCHHHHHhhhccCcchHHHHHHHH
Q 008913 467 LSQVIRLSHHHLKQMVPIDHGDGKKIMNNF 496 (549)
Q Consensus 467 ~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~ 496 (549)
+|+++.+++++|.++++++. ..+.+.+.+
T Consensus 91 ~c~~~~i~~~~~~~iie~~~-LW~~~~~~l 119 (207)
T PRK11832 91 NCTGYHLPAKQTITLIEQNQ-LWRDAFYWL 119 (207)
T ss_pred ccEEEEeeHHHHHHHHHHhc-hHHHHHHHH
Confidence 99999999999999999884 444333333
No 39
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.76 E-value=0.00085 Score=57.12 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHhc-ccccccCCCCEEEecC-CCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhc-----C
Q 008913 383 GVSVDLIAQMVSE-MKAEYFPPKVEIILQN-EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIF-----N 455 (549)
Q Consensus 383 ~~~~~~l~~l~~~-~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~-----~ 455 (549)
+.+....++|+.+ .+.....+|+.---|| .+.+.+-++++|++.|.. +|+ .+..+.|-++..-.+... +
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g~--fLH~I~p~qFlDSPEW~s~~~s~~ 89 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DGR--FLHYIYPYQFLDSPEWESLRPSED 89 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CCE--eeEeecccccccChhhhccccCCC
Confidence 4677788888887 5668889999998888 556789999999999986 554 677788888877555443 3
Q ss_pred CCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHH
Q 008913 456 IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNF 496 (549)
Q Consensus 456 ~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~ 496 (549)
...++|++|.++|..+..+|+.+..++.++|-...-+-..+
T Consensus 90 ~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~li 130 (153)
T PF04831_consen 90 DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLI 130 (153)
T ss_pred CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHH
Confidence 44689999999999999999999999999986655544433
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00017 Score=68.48 Aligned_cols=58 Identities=22% Similarity=0.442 Sum_probs=47.0
Q ss_pred hHHHHHHhhhhhhhcccccccccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVN--------TGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t--------~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~ 306 (549)
.|++|+|+.++|+||+|+||.++-- +.-+.++.+++++|+.+++-.++.+.-.+..++
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999988643 234678888999999999888887766555443
No 41
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00012 Score=73.77 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=41.4
Q ss_pred HHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300 (549)
Q Consensus 250 Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~ 300 (549)
...|+|++++|.+||||||.+|.-+...+..++++-+..++..-.+..++.
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~ 268 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQ 268 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHH
Confidence 456999999999999999999999999888877776666666665555554
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00018 Score=68.33 Aligned_cols=52 Identities=29% Similarity=0.560 Sum_probs=45.8
Q ss_pred hhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMT 299 (549)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~ 299 (549)
-++.-|+|||.+.+||+|||..+|.|..+++|+|+.-++|+-+.-..+..++
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 4578899999999999999999999999999999999999877666665554
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.26 E-value=0.1 Score=59.26 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=28.4
Q ss_pred ChhHHhHHHHHHHHHHHHHHHhhhhhhc--------ccccccchhhHHHHHHHHHHhhhhee
Q 008913 57 DYRYRWWQTFLVVLVVYSAWASPFELAF--------RKAATGSLLIVDLVVDFFFAADIIFT 110 (549)
Q Consensus 57 s~~~~~W~~~~~~~~~~~~~~ip~~~~f--------~~~~~~~~~~~~~~~~~if~~Di~l~ 110 (549)
+.+...-+++.+++++|.++--...+.= ..-....|.++|++..++-+.=+.+-
T Consensus 1172 DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLY 1233 (1634)
T PLN03223 1172 DWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMW 1233 (1634)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544433322211 11124678889987777666666553
No 44
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0037 Score=61.21 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC-----CcccccccCCcccCchhhhHHHHHHhhhhhhhccccccccc--CCchhHH
Q 008913 206 CVTLFAVHSAGCFYFYLAAHHKIPE-----NTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHA--VNTGEKV 278 (549)
Q Consensus 206 ~~~l~~~h~~acl~~~i~~~~~~~~-----~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p--~t~~e~~ 278 (549)
..+++..-++|++||.++...++-+ .+|.. --.....+..||-|++.|=||+|||--.+ .=+...+
T Consensus 71 ~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tp-------CV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ 143 (400)
T KOG3827|consen 71 LSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTP-------CVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIF 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCc-------ceeeccchhhhheeeeeeeeeeeccccccCccChHHHH
Confidence 3334444558999999998554321 11211 11233568889999999999999997543 3467778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchH
Q 008913 279 FNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (549)
Q Consensus 279 ~~i~~~l~g~~~~a~~i~~i~~~~~~~~~ 307 (549)
..++-+++|+++-|+++|.+.+-++...+
T Consensus 144 ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 144 LLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 88888999999999999999777765443
No 45
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.65 E-value=0.0092 Score=70.13 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=84.8
Q ss_pred chhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCCcchhhHH
Q 008913 91 SLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFL 170 (549)
Q Consensus 91 ~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l 170 (549)
.+.+.+.++-.+|.+|+.+....- +| ..|+.+.|+++|.+-+. +.++... . .....+.++
T Consensus 474 ~l~~~~~vF~~lF~~Em~~ki~al-----------~~----~~yF~~~~n~fD~~iv~-l~~~~~~-~---~~~~g~svL 533 (1592)
T KOG2301|consen 474 LLYLGNVVFTGLFTVEMILKIYAL-----------GP----RNYFRRGWNIFDLIIVL-LSLLELL-L---KNVYGLSVL 533 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-----------Cc----HHHHhhhcchheEEEEe-hhhHHhc-c---cchHHHHHH
Confidence 356788899999999999887642 22 67888889999999988 5544433 2 222566778
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccCCCCcccccccCCcccCchhh
Q 008913 171 NLLRLWRLRRVGELFTRLEKDIRF-TYFITRLSKLICVTLFAVH-SAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWL 248 (549)
Q Consensus 171 ~llrllRl~ri~~~~~~l~~~~~~-~~~~~~l~~l~~~~l~~~h-~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~ 248 (549)
|.+|++|++|+.+.+..+++.... ......+..+.+.+++++- ...+..-+++...... .. ....+.
T Consensus 534 r~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~----------~~~~~~ 602 (1592)
T KOG2301|consen 534 RSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CD----------IHWHFT 602 (1592)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CC----------Cccchh
Confidence 888888888888777666554321 1122333444333333332 2233333333222211 11 112345
Q ss_pred hHHHHHHhhhhhhhcccccc
Q 008913 249 GYTYSIYWSIVTLTTVGYGD 268 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygd 268 (549)
.+..|+-+..+ +|+-++.|
T Consensus 603 ~fp~sfl~vFq-lt~e~W~e 621 (1592)
T KOG2301|consen 603 DFPHSFLSVFQ-ITCEEWTD 621 (1592)
T ss_pred hCHHHHHHHHH-HcCCchHH
Confidence 57778888877 66544444
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.63 E-value=0.006 Score=63.37 Aligned_cols=111 Identities=9% Similarity=0.064 Sum_probs=83.7
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHhcccccc-cCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEY-FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 370 ~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~-~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
...+++.+.|.|.+++-...++||..|-... =.+|.+|...|+.-+..++|+.|.|+|.. .+|+ ...+.-|+.||
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~-PdGk---~e~l~mGnSFG 353 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK-PDGK---REELKMGNSFG 353 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec-CCCc---eEEeecccccC
Confidence 3457788899999999999999999887644 46788888999999999999999999987 4665 24678899999
Q ss_pred chhhhcCCCeeeEE-EEcceEEEEEeCHHHHHhhhcc
Q 008913 449 EIGVIFNIPQPFTV-RTKRLSQVIRLSHHHLKQMVPI 484 (549)
Q Consensus 449 e~~~l~~~~~~~~v-~a~~~~~l~~i~~~~f~~l~~~ 484 (549)
...-...+-..--+ .-+.+|+..+|...||-.++..
T Consensus 354 ~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 354 AEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 54322211111112 2357899999999998877653
No 47
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.35 E-value=0.013 Score=68.99 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccc---cccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchh
Q 008913 64 QTFLVVLVVYSAWASPFELAFRKA---ATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWF 140 (549)
Q Consensus 64 ~~~~~~~~~~~~~~ip~~~~f~~~---~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f 140 (549)
..+++.+++.+....+..-....+ ....+.+.|.++..+|.+++++....- |. .-|+++.|.
T Consensus 843 ~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia~------Gf---------~~y~rn~w~ 907 (1592)
T KOG2301|consen 843 EAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIAY------GF---------FFYFRNAWN 907 (1592)
T ss_pred HHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHh------HH---------HHHHhhHHh
Confidence 444445555554444333222211 245578899999999999999987643 21 229999999
Q ss_pred hhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 141 TMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYF 220 (549)
Q Consensus 141 ~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~~~~~~~~l~~l~~~~l~~~h~~acl~~ 220 (549)
++|++.++-..+...... .....++.+|.+|.+|.+|.+++.+....+......-++.++..+++.+.+=+++-
T Consensus 908 ~lDf~Vv~vslisl~~~~------~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFa 981 (1592)
T KOG2301|consen 908 WLDFVVVIVSLISLIASL------KILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFA 981 (1592)
T ss_pred hhhHHHhhhHHHHHHHhh------hhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988876654332221 12334555555555555555555555444444445556666666666655555555
Q ss_pred HHhh
Q 008913 221 YLAA 224 (549)
Q Consensus 221 ~i~~ 224 (549)
.++.
T Consensus 982 i~gv 985 (1592)
T KOG2301|consen 982 IMGV 985 (1592)
T ss_pred HHHH
Confidence 4543
No 48
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.93 E-value=0.25 Score=54.25 Aligned_cols=102 Identities=14% Similarity=0.242 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcc-----cccccchhhHHHHHHHHHHhhhheeeeE-eEEeCCCcEEEechhHHHHHhh
Q 008913 62 WWQTFLVVLVVYSAWASPFELAFR-----KAATGSLLIVDLVVDFFFAADIIFTFFV-AYLDKSTYLLVDDHKKIALRYV 135 (549)
Q Consensus 62 ~W~~~~~~~~~~~~~~ip~~~~f~-----~~~~~~~~~~~~~~~~if~~Di~l~f~t-~~~~~~~g~~i~~~~~i~~~Yl 135 (549)
+++.+.+++++++|+++-.+-.-. .+....+..+|-++-++|.++++++... +.+.+ +-|+
T Consensus 80 wfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifgk-------------kcyl 146 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFGK-------------KCYL 146 (1956)
T ss_pred HHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cccc
Confidence 456777788888888776543222 2224457789999999999999998763 22222 6688
Q ss_pred ccchhhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHH
Q 008913 136 TRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRR 180 (549)
Q Consensus 136 ~~~~f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r 180 (549)
-..|.-+|++.++.=-+-+.....+ ..+..+|..|++|-+|
T Consensus 147 gdtwnrldffiv~agm~eysldlqn----vslsairtvrvlrplr 187 (1956)
T KOG2302|consen 147 GDTWNRLDFFIVMAGMVEYSLDLQN----VSLSAIRTVRVLRPLR 187 (1956)
T ss_pred cCchhhhhhhheehhhhhhcccccc----cchhhhhhhhhhhhhh
Confidence 8779999987776544333222222 3445555555555443
No 49
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.53 E-value=0.019 Score=59.81 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=76.1
Q ss_pred HHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhh
Q 008913 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGV 452 (549)
Q Consensus 373 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~ 452 (549)
..|.+...|+++-..-++.+|...+.+.++.+.++++.|+.+...|++++|.|-|.. . .+.|-.+||-.
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g----q-----i~mp~~~fgkr-- 105 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG----Q-----IYMPYGCFGKR-- 105 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec----c-----eecCccccccc--
Confidence 467778889999999999999999999999999999999999999999999997742 2 45677778866
Q ss_pred hcCCCeeeEEEEcceEEEEEeC
Q 008913 453 IFNIPQPFTVRTKRLSQVIRLS 474 (549)
Q Consensus 453 l~~~~~~~~v~a~~~~~l~~i~ 474 (549)
+|..|..++-.++.++.++++
T Consensus 106 -~g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 106 -TGQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred -cccccccceeeecccceeeee
Confidence 577788888888888888884
No 50
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.0064 Score=63.48 Aligned_cols=48 Identities=23% Similarity=0.532 Sum_probs=41.0
Q ss_pred hhHHHHHHhhhhhhhcccccccccCCchhH--------HHHHHHHHHHHHHHHHHH
Q 008913 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEK--------VFNMLYMLFNIGLTAYII 295 (549)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~--------~~~i~~~l~g~~~~a~~i 295 (549)
-.|+.|+|++++++||+|+||++|.+...+ ....+..++|....+...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 368889999999999999999999998866 577788888887777665
No 51
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=94.15 E-value=0.6 Score=42.44 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008913 198 ITRLSKLICVTLFAVHSAGCFYFYLAA 224 (549)
Q Consensus 198 ~~~l~~l~~~~l~~~h~~acl~~~i~~ 224 (549)
..+++.++..+++..++.++..+.-..
T Consensus 97 l~~~~~~~~~~~~~~a~~~~~lf~~~~ 123 (200)
T PF00520_consen 97 LFKFILLLFIVLLFFACIGYQLFGGSD 123 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccchhheeccccc
Confidence 345555555555555556666555554
No 52
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=93.47 E-value=10 Score=42.89 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008913 200 RLSKLICVTLFAVHSAGCFYFYLAA 224 (549)
Q Consensus 200 ~l~~l~~~~l~~~h~~acl~~~i~~ 224 (549)
.+++++++++++.--+|+.++.+..
T Consensus 507 dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 507 DILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666777766653
No 53
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.11 E-value=11 Score=41.16 Aligned_cols=82 Identities=24% Similarity=0.243 Sum_probs=49.3
Q ss_pred HHhhhhhh--hcccccccccC--Cch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHHHHH
Q 008913 254 IYWSIVTL--TTVGYGDLHAV--NTG----EKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT-LFMRNAINEILRYGS 324 (549)
Q Consensus 254 ly~a~~t~--ttvGygdi~p~--t~~----e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~ 324 (549)
+.-++.|+ +|+||||.... +.. -.+|.++++++.++++-++|+.+++......+.+ ++.+.+-..+ --|-
T Consensus 591 ~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~l 669 (782)
T KOG3676|consen 591 FSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILML 669 (782)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHH
Confidence 44444444 68999997643 422 2344555555566777777777777766655544 4444443332 3456
Q ss_pred hCCCCHHHHHHH
Q 008913 325 KNRLPEGLREQM 336 (549)
Q Consensus 325 ~~~i~~~l~~rv 336 (549)
++.+|+.++.+-
T Consensus 670 Ers~p~~~r~~~ 681 (782)
T KOG3676|consen 670 ERSLPPALRKRF 681 (782)
T ss_pred HhcCCHHHHHHH
Confidence 688888887773
No 54
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=91.48 E-value=7 Score=40.80 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=12.6
Q ss_pred ccchhhHHHHHHHHHHhhhheee
Q 008913 89 TGSLLIVDLVVDFFFAADIIFTF 111 (549)
Q Consensus 89 ~~~~~~~~~~~~~if~~Di~l~f 111 (549)
...|.++|++.-++.++=+++.+
T Consensus 241 ~~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 241 KSFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHH
Confidence 34466667666555555444444
No 55
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.83 E-value=15 Score=42.64 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=51.2
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhhhhhhcccccccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhh
Q 008913 56 YDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYV 135 (549)
Q Consensus 56 ~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl 135 (549)
.++...+|-.++..+.++.++...+.+-|...+ +.+.++-++--+.+.+|-+=+..++ +. +. =+++++ -|+
T Consensus 789 sAPIvkFw~~~l~yi~FL~lftYvlLv~~~~~P-s~~Ew~~~~~iftl~~E~vRq~~~s---e~-~~---l~~kv~-v~f 859 (1381)
T KOG3614|consen 789 SAPIVKFWLNVLSYIAFLLLFTYVLLVDFQPSP-SMWEWILFAWIFTLFLEEVRQIFIS---ES-GL---LPQKVR-VYF 859 (1381)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHheeccCCCC-CccchhHHHHHHHHHHHHHHHHhcC---CC-cc---hhhHHH-HHH
Confidence 456677788888877777777777766666654 2232222222233444444443332 21 21 123333 455
Q ss_pred ccchhhhhhhccchHHHH
Q 008913 136 TRLWFTMDVASTLPFQFI 153 (549)
Q Consensus 136 ~~~~f~~Dlis~iP~~~~ 153 (549)
..+|+.+|+++++-|.+-
T Consensus 860 ~d~wN~~d~~ai~~F~vG 877 (1381)
T KOG3614|consen 860 ADFWNLIDLLAILLFLVG 877 (1381)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 555999999999877553
No 56
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=90.53 E-value=22 Score=40.71 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=30.5
Q ss_pred hhCCHHHHHHHHHHHHHHHH----hhhhhccCCCHHHHHHHHhccc
Q 008913 356 EDLPKAIRSSISQHLFRGTV----EKTYLFQGVSVDLIAQMVSEMK 397 (549)
Q Consensus 356 ~~Lp~~Lr~ei~~~~~~~~l----~~~~~f~~~~~~~l~~l~~~~~ 397 (549)
+.+|+.||+++..++....- .+-.+++.++++...+++..+.
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~ 372 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLF 372 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHH
Confidence 47999999999888755432 2345677888888888877653
No 57
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=89.65 E-value=0.61 Score=40.46 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=51.8
Q ss_pred chhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 008913 245 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGS 324 (549)
Q Consensus 245 ~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (549)
........++++++.+++. +-++..|++...|++.++..++++++.+...+++++.+..... +..++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHH
Confidence 3445677899999888876 4467899999999999999999999999999999998876432 233445555544
Q ss_pred hC
Q 008913 325 KN 326 (549)
Q Consensus 325 ~~ 326 (549)
.+
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 58
>COG4709 Predicted membrane protein [Function unknown]
Probab=88.78 E-value=2.2 Score=37.93 Aligned_cols=74 Identities=26% Similarity=0.324 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh---cccHHHHHhhC--CHHHHHHHHHHHHHHHHhhhhhccCCCHHH
Q 008913 314 NAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA---ELQQEEVLEDL--PKAIRSSISQHLFRGTVEKTYLFQGVSVDL 388 (549)
Q Consensus 314 ~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~---~~~~~~~l~~L--p~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~ 388 (549)
+-+++++.|+ .++|++.++++..||+-+++.. +.+|+++.++| |.++-.|+....-.+....-|-+++.....
T Consensus 5 efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 4467788888 5799999999999999888765 77899999987 666777776666656565556666655543
Q ss_pred H
Q 008913 389 I 389 (549)
Q Consensus 389 l 389 (549)
+
T Consensus 83 i 83 (195)
T COG4709 83 I 83 (195)
T ss_pred H
Confidence 3
No 59
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.10 E-value=80 Score=35.67 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=15.1
Q ss_pred cchhhHHHHHHHHHHhhhheeee
Q 008913 90 GSLLIVDLVVDFFFAADIIFTFF 112 (549)
Q Consensus 90 ~~~~~~~~~~~~if~~Di~l~f~ 112 (549)
..|.++|+++.++.++=++++..
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~~ 520 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMIT 520 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777766666543
No 60
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=82.93 E-value=7.4 Score=28.54 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=43.1
Q ss_pred cccCCCCEEEecCCCCC-eEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 399 EYFPPKVEIILQNEIPT-DLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~-~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
..++||+..-..-.... .++++++|.+.+.. +|+ ...+++|+.+=.. .+.+........+++.++.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~i~---~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV--DGE---RVELKPGDAIYIP---PGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE--TTE---EEEEETTEEEEEE---TTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE--ccE---EeEccCCEEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 35678887665555555 89999999999884 443 3578888853322 34555555555556665543
No 61
>PLN03223 Polycystin cation channel protein; Provisional
Probab=82.36 E-value=57 Score=38.45 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHhhccchhhhhhhccchH
Q 008913 132 LRYVTRLWFTMDVASTLPF 150 (549)
Q Consensus 132 ~~Yl~~~~f~~Dlis~iP~ 150 (549)
+.|++++|.|+|++.++-.
T Consensus 1208 laYFKSfWNwLEIl~IlLS 1226 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASIGLH 1226 (1634)
T ss_pred hhHhccchHHHHHHHHHHH
Confidence 6899999999999665543
No 62
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=82.22 E-value=8.3 Score=34.86 Aligned_cols=55 Identities=33% Similarity=0.519 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh---cccHHHHHhhC--CHHHHHHHHHHH
Q 008913 314 NAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA---ELQQEEVLEDL--PKAIRSSISQHL 370 (549)
Q Consensus 314 ~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~---~~~~~~~l~~L--p~~Lr~ei~~~~ 370 (549)
+=+++++++++ ++|++-++++.+||+-+++.. |.+++++.++| |.++-+++....
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 34667788886 699999999999999888764 67899999997 556666665443
No 63
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.26 E-value=96 Score=34.53 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=36.2
Q ss_pred hhCCHHHHHHHHHHHHHHHHh-----hhhhccCCCHHHHHHHHhcccc
Q 008913 356 EDLPKAIRSSISQHLFRGTVE-----KTYLFQGVSVDLIAQMVSEMKA 398 (549)
Q Consensus 356 ~~Lp~~Lr~ei~~~~~~~~l~-----~~~~f~~~~~~~l~~l~~~~~~ 398 (549)
++||+.||+.+..+...++.. ...++++++++..++|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 479999999999998877765 5578899999999999888743
No 64
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.97 E-value=11 Score=41.58 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHhhccchhhhhhhccchH
Q 008913 132 LRYVTRLWFTMDVASTLPF 150 (549)
Q Consensus 132 ~~Yl~~~~f~~Dlis~iP~ 150 (549)
..|++.+|.++|++...-+
T Consensus 411 ~~y~~~~Wn~lDf~m~siy 429 (822)
T KOG3609|consen 411 DGYLAFWWNWLDFAMISIY 429 (822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888899998776544
No 65
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.83 E-value=1e+02 Score=32.23 Aligned_cols=74 Identities=19% Similarity=0.374 Sum_probs=45.9
Q ss_pred hhCCHHHHHHHHHHH-----HHHHHhhhhhccCCCHHHHHHHHhccccccc-------------------CCCCEEEecC
Q 008913 356 EDLPKAIRSSISQHL-----FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYF-------------------PPKVEIILQN 411 (549)
Q Consensus 356 ~~Lp~~Lr~ei~~~~-----~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~-------------------~~~e~I~~~g 411 (549)
+..|..|+..+.... +++........+.+++....+|+...+..+. .-...++.+|
T Consensus 259 RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPg 338 (536)
T KOG0500|consen 259 RKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPG 338 (536)
T ss_pred hcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCC
Confidence 478888888875543 2333445566777888887777766553222 2223566667
Q ss_pred CCCCeEEEEEEeEEE--EEEecCCc
Q 008913 412 EIPTDLYIVVSGAVD--VLIYKNGA 434 (549)
Q Consensus 412 ~~~~~ly~I~~G~v~--v~~~~~~~ 434 (549)
| |+..+|.+. ++.-+.|+
T Consensus 339 D-----yICrKGdvgkEMyIVk~G~ 358 (536)
T KOG0500|consen 339 D-----YICRKGDVGKEMYIVKEGK 358 (536)
T ss_pred C-----eEEecCcccceEEEEEccE
Confidence 6 788999873 44445565
No 66
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=75.55 E-value=7.5 Score=41.10 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHH
Q 008913 207 VTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLF 286 (549)
Q Consensus 207 ~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~ 286 (549)
.+++.+|++|...|++....+.. .-..+. .-+++...-..-.|+||+-..+..-|-|+-+|.+..-++..+++.-+
T Consensus 575 lv~~SVhvVal~lYlLDrfSPFg-RFk~~d---s~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGF 650 (993)
T KOG4440|consen 575 LVGLSVHVVALMLYLLDRFSPFG-RFKVND---SEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGF 650 (993)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc-ceeecc---CccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhh
Confidence 44456799999988877532211 000110 11233334567789999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008913 287 NIGLTAYIIGNMTNLIV 303 (549)
Q Consensus 287 g~~~~a~~i~~i~~~~~ 303 (549)
++++.|...+++++.+.
T Consensus 651 aMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 651 AMIIVASYTANLAAFLV 667 (993)
T ss_pred heeeehhhhhhhhhhee
Confidence 99999988999887764
No 67
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=70.53 E-value=1.7e+02 Score=33.02 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=12.1
Q ss_pred HHhhccchhhhhhhcc
Q 008913 132 LRYVTRLWFTMDVAST 147 (549)
Q Consensus 132 ~~Yl~~~~f~~Dlis~ 147 (549)
..|+++.|.++|++..
T Consensus 416 ~~y~~~~wn~~d~~~~ 431 (743)
T TIGR00870 416 FEYIHQLWNILDFGMN 431 (743)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888889998443
No 68
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=57.91 E-value=31 Score=28.20 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=35.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhhh-----------cccHHHHHhhCCHHHHHHHHHH
Q 008913 321 RYGSKNRLPEGLREQMLAHMQLRFKTA-----------ELQQEEVLEDLPKAIRSSISQH 369 (549)
Q Consensus 321 ~~~~~~~i~~~l~~rv~~y~~~~~~~~-----------~~~~~~~l~~Lp~~Lr~ei~~~ 369 (549)
+|+ .-+|++++..|..++.-.-... ..+...++..||+.||++|...
T Consensus 48 efL--~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 48 EFL--AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HHH--HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 444 4689999999998876443221 3457789999999999998653
No 69
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=57.24 E-value=46 Score=28.71 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=47.6
Q ss_pred ccccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEec-CCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 396 MKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~-~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
+....+.||...-..-.. ..++++|++|...+.... ++.++....+++||.+=.. .+.++.......+++.++.+
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip---~g~~H~~~n~~~~~~~~l~~ 108 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP---QGHPHFQVNSGDENLEFVAF 108 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC---CCCEEEEEcCCCCCEEEEEE
Confidence 344567777776544332 568999999999987633 3445567789999975533 23333332233455666655
Q ss_pred CHHH
Q 008913 474 SHHH 477 (549)
Q Consensus 474 ~~~~ 477 (549)
+-.+
T Consensus 109 ~~~~ 112 (146)
T smart00835 109 NTND 112 (146)
T ss_pred ecCC
Confidence 4443
No 70
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=56.43 E-value=65 Score=26.92 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcccHHHHHhhCCH
Q 008913 316 INEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPK 360 (549)
Q Consensus 316 ~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~ 360 (549)
-.+++.|-.++-+-+-|+..=-+++--.++++-..+.+++++.|.
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCC
Confidence 344555655666666666555555444455544456667777664
No 71
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=52.67 E-value=40 Score=25.26 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 402 PPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 402 ~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
.||..=..... +++.+|++|.+.+.. ++|. ...+++||.|=
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~-~~G~---~~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITD-EDGE---TVTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEE-TTTE---EEEEETTEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEE-CCCC---EEEEcCCcEEE
Confidence 45543333222 788899999999976 3554 25789999754
No 72
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=52.36 E-value=69 Score=26.93 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=40.2
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
....+.||...-..-....++++|++|.+.+....+|+ ...+++||.+--. .+.++.. ++.++++++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~---~~~L~aGD~i~~~---~~~~H~~--~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE---VHPIRPGTMYALD---KHDRHYL--RAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE---EEEeCCCeEEEEC---CCCcEEE--EcCCCEEEEEE
Confidence 33567888755332111236999999999986212243 3578999975433 2334333 33367776654
No 73
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=51.95 E-value=57 Score=28.66 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=37.6
Q ss_pred CCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHH
Q 008913 413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (549)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~ 476 (549)
..++++++++|.+.+-..++|+. ....+++|++|=...-....| ++..+|.++++.+.
T Consensus 47 ~tdE~FyqleG~~~l~v~d~g~~-~~v~L~eGd~flvP~gvpHsP-----~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTEEGKR-EDVPIREGDIFLLPPHVPHSP-----QRPAGSIGLVIERK 104 (159)
T ss_pred CCceEEEEEcceEEEEEEcCCcE-EEEEECCCCEEEeCCCCCccc-----ccCCCcEEEEEEeC
Confidence 36889999999998876545542 345799999875553333332 23456666666544
No 74
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=50.87 E-value=21 Score=37.71 Aligned_cols=54 Identities=13% Similarity=0.337 Sum_probs=47.0
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~ 303 (549)
....|+||++.....-| -||.|.+..+++..-++-++.+++.+...+++++.++
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 45679999999988877 6899999999999999999988888888888887764
No 75
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=50.06 E-value=84 Score=22.23 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 008913 311 FMRNAINEILRYGS 324 (549)
Q Consensus 311 ~~~~~~~~i~~~~~ 324 (549)
..+++++++-+.+.
T Consensus 43 ~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 43 SMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHc
Confidence 57778877776654
No 76
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=46.09 E-value=75 Score=35.29 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 008913 251 TYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHS 305 (549)
Q Consensus 251 ~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~ 305 (549)
..++|.++.++..-| ++..|.+...|++..+..+++.++.+...+++++++...
T Consensus 383 ~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~ 436 (656)
T KOG1052|consen 383 LNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVP 436 (656)
T ss_pred ccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 346677777777777 558999999999999999999999999999999998754
No 77
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=44.53 E-value=2.2e+02 Score=26.19 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=41.4
Q ss_pred hhCCHHHHHHHHHHHHHHHHhhhhhc-cCCCHHHHHHHHhcccccc--cCCCCEEEecCCCCC
Q 008913 356 EDLPKAIRSSISQHLFRGTVEKTYLF-QGVSVDLIAQMVSEMKAEY--FPPKVEIILQNEIPT 415 (549)
Q Consensus 356 ~~Lp~~Lr~ei~~~~~~~~l~~~~~f-~~~~~~~l~~l~~~~~~~~--~~~~e~I~~~g~~~~ 415 (549)
..+|+. ..++...+...++.-.-.| ...++...++......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 456666 4444555555555444444 4567778888888888888 999999999999765
No 78
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=44.15 E-value=56 Score=27.49 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=33.5
Q ss_pred cccccccCCCCEE-EecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 395 EMKAEYFPPKVEI-ILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 395 ~~~~~~~~~~e~I-~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
..+...+.||+-+ .+.....++.|+|++|...+.. ++++ ..+++|+++
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~--~~~~---~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI--GGEE---VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE--CCEE---EEecCCCEE
Confidence 3455677888875 3444447899999999999986 4432 357888853
No 79
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=43.17 E-value=1.1e+02 Score=31.19 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=42.2
Q ss_pred hhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (549)
Q Consensus 247 ~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~ 303 (549)
...|+.++-|++..+.+++-++..........+++++.+++++++-+.+..++..++
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346888888998888888766553344445777888888888888888888876664
No 80
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=41.60 E-value=63 Score=20.19 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 008913 316 INEILRYGSKNRLP-----EGLREQMLAHM 340 (549)
Q Consensus 316 ~~~i~~~~~~~~i~-----~~l~~rv~~y~ 340 (549)
..+++++++.+++| .+|.+|+.+|+
T Consensus 6 v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 6 VAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 56788899999888 46888888774
No 81
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=39.41 E-value=83 Score=25.65 Aligned_cols=49 Identities=31% Similarity=0.395 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHh-h-------h------cccHHHHHhhCCHHHHHHHHHHHHHHHH
Q 008913 327 RLPEGLREQMLAHMQLRFK-T-------A------ELQQEEVLEDLPKAIRSSISQHLFRGTV 375 (549)
Q Consensus 327 ~i~~~l~~rv~~y~~~~~~-~-------~------~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l 375 (549)
-+|.+++.+|..-....-+ + . ..-..++|..||+.+|.||..+.....-
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~ 70 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERR 70 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4788898888654332211 0 0 1124689999999999999887766543
No 82
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=38.84 E-value=23 Score=36.22 Aligned_cols=43 Identities=14% Similarity=0.317 Sum_probs=37.8
Q ss_pred CCCeEechhhhcCCCeeeEEEE-cceEEEEEeCHHHHHhhhccC
Q 008913 443 SADMAGEIGVIFNIPQPFTVRT-KRLSQVIRLSHHHLKQMVPID 485 (549)
Q Consensus 443 ~G~~fGe~~~l~~~~~~~~v~a-~~~~~l~~i~~~~f~~l~~~~ 485 (549)
+||-||..++....||.+++.. ..+|.++..++.+|..++++-
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 5899999999999999988755 457999999999999998765
No 83
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=38.81 E-value=37 Score=23.92 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=16.2
Q ss_pred HHHHhhCCHHHHHHHHHHH
Q 008913 352 EEVLEDLPKAIRSSISQHL 370 (549)
Q Consensus 352 ~~~l~~Lp~~Lr~ei~~~~ 370 (549)
-++++.||..|+.|+..++
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 4688999999999998766
No 84
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=38.43 E-value=5.4e+02 Score=27.76 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=37.9
Q ss_pred HhhCCHHHHHHHHHHHHHHH-----HhhhhhccCCCHHHHHHHHhcccccccCCCC
Q 008913 355 LEDLPKAIRSSISQHLFRGT-----VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKV 405 (549)
Q Consensus 355 l~~Lp~~Lr~ei~~~~~~~~-----l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e 405 (549)
|.+.|..|-+.++.++-... +..-..+..|+.+...+||-++..+.|..+-
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHp 554 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHP 554 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCc
Confidence 45789999999998886554 2333566778888888888888887776543
No 85
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=37.73 E-value=1.2e+02 Score=31.61 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=16.4
Q ss_pred cchhhHHHHHHHHHHhhhheeeeEe
Q 008913 90 GSLLIVDLVVDFFFAADIIFTFFVA 114 (549)
Q Consensus 90 ~~~~~~~~~~~~if~~Di~l~f~t~ 114 (549)
..+.++|++.-+=|.+++++....+
T Consensus 273 ~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 273 SPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777777777777777665543
No 86
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=37.63 E-value=1.3e+02 Score=27.49 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=32.5
Q ss_pred cccccCCCCEE---------EecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 397 KAEYFPPKVEI---------ILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 397 ~~~~~~~~e~I---------~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
-...+.||... +++.....++|++++|...+...+...+.....+.+|+.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 34556777743 23333445899999999988763222123456789998643
No 87
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=35.64 E-value=76 Score=26.65 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=38.1
Q ss_pred ccccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEech
Q 008913 396 MKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~ 450 (549)
+....+.||+.+-..-.+ .+...++++|.+++.. +|. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~--~g~---~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL--EGE---KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe--cCC---ceEecCCCEEEEC
Confidence 345778999998777665 7789999999999986 343 3578999987654
No 88
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=35.02 E-value=95 Score=27.84 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=38.1
Q ss_pred CCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHH
Q 008913 412 EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (549)
Q Consensus 412 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~ 476 (549)
+..++++++++|.+.+...++|+. ....+++|+.|=-..=....| ++..+|..+++.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~-~~v~L~eGd~fllP~gvpHsP-----~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKR-RDVPIREGEMFLLPPHVPHSP-----QREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCce-eeEEECCCCEEEeCCCCCcCC-----ccCCCeEEEEEEeC
Confidence 456789999999998876545532 345789999875543222222 33466777777544
No 89
>PRK11677 hypothetical protein; Provisional
Probab=29.51 E-value=3.6e+02 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcccHHHHHhhCCHH
Q 008913 308 RTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKA 361 (549)
Q Consensus 308 ~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~ 361 (549)
...+.++++++.+.-+. +-+++|.+||. +..++++.|..+
T Consensus 30 ~q~~le~eLe~~k~ele------~YkqeV~~HFa--------~TA~Ll~~L~~~ 69 (134)
T PRK11677 30 QQQALQYELEKNKAELE------EYRQELVSHFA--------RSAELLDTMAKD 69 (134)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 33444455554444332 23466777765 334555555444
No 90
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.99 E-value=2.7e+02 Score=23.48 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcccHHHHHhhCCHH
Q 008913 310 LFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKA 361 (549)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~ 361 (549)
.+.++.+++.+.-+. .-++.|.+||.. ..++++.|..+
T Consensus 28 ~~l~~eL~~~k~el~------~yk~~V~~HF~~--------ta~Ll~~l~~~ 65 (128)
T PF06295_consen 28 AKLEQELEQAKQELE------QYKQEVNDHFAQ--------TAELLDNLTQD 65 (128)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 444555554444432 235667777653 34455555444
No 91
>PRK09108 type III secretion system protein HrcU; Validated
Probab=28.83 E-value=6.3e+02 Score=25.60 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008913 277 KVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLA 338 (549)
Q Consensus 277 ~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~ 338 (549)
.++..+..++..+..++++-.+.++.-+...-.++.+=..+++++-.|+..=+++++.|.++
T Consensus 180 ~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 180 ILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 34444444444444444444444443332222222222224445544554444444444443
No 92
>PRK11171 hypothetical protein; Provisional
Probab=28.09 E-value=2.1e+02 Score=27.62 Aligned_cols=69 Identities=10% Similarity=-0.017 Sum_probs=42.6
Q ss_pred cccccCCCCEEEecCC--CCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 397 KAEYFPPKVEIILQNE--IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~--~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
....+.||...-.... ..+++.+|++|.+++.. +|+ ...+.+||++=-. .+.++...-...+.|+++.+
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~--~g~---~~~L~~GDsi~~p---~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL--EGK---THALSEGGYAYLP---PGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEECCCCCEEEEEE
Confidence 3355677764433222 23578999999999976 444 3578999964322 35555554445566777665
No 93
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=26.75 E-value=95 Score=23.61 Aligned_cols=42 Identities=24% Similarity=0.475 Sum_probs=31.5
Q ss_pred cHHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhccccc
Q 008913 350 QQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAE 399 (549)
Q Consensus 350 ~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~ 399 (549)
...++|..||+.+|.++.. ++.-+..++++.++.+...++.+
T Consensus 28 ~AA~VL~~lp~e~r~~v~~--------Ria~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 28 QAAEVLSQLPEELRAEVVR--------RIARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHHHTS-HHHHHHHHH--------HHHTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHH--------HHHccCCCCHHHHHHHHHHHHHH
Confidence 4667899999999988754 44567888999998888776654
No 94
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.37 E-value=1e+03 Score=27.21 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHhhccchhhhhhhccchHH
Q 008913 132 LRYVTRLWFTMDVASTLPFQ 151 (549)
Q Consensus 132 ~~Yl~~~~f~~Dlis~iP~~ 151 (549)
++|+++.|+++|++-..-..
T Consensus 493 ~~y~~s~wN~ld~~i~~ls~ 512 (798)
T KOG3599|consen 493 GRYVRSKWNWLDLAIVLLSV 512 (798)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 48999999999987665443
No 95
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=26.21 E-value=1.5e+02 Score=30.15 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=33.5
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
....+.||...-..-....++.++++|.+++...+.+.+.....+++||.+=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEE
Confidence 3355677776533223456799999999998874332233444799999754
No 96
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=26.18 E-value=1.6e+02 Score=25.21 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=34.2
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCc----eeeeE--EecCCCeEech
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGA----EQFLT--KLGSADMAGEI 450 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~----~~~~~--~l~~G~~fGe~ 450 (549)
......||....-.-..+..+.+|.+|+..+... .++. ..... .+++||+|-..
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP 97 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVP 97 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeec
Confidence 3344578777765444788899999999986542 3321 11222 49999987644
No 97
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=25.86 E-value=2.5e+02 Score=25.19 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=39.6
Q ss_pred ccCCCCEEEe-cCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 400 YFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 400 ~~~~~e~I~~-~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
.+.||...-. .-..+.++.+|++|.+.+.. +|+ ...+++||.+=-. .+.++.+.....+.|.++.+
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~--~~~---~~~l~~Gd~~~~~---~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTI--NGQ---DYHLVAGQSYAIN---TGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEE--CCE---EEEecCCCEEEEc---CCCCeeeeCCCCCCeEEEEE
Confidence 4455553221 12334689999999999876 443 3478999964322 34555555444556666654
No 98
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.99 E-value=3.5e+02 Score=27.58 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=43.1
Q ss_pred ccccccCCCCEEEecC-CCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 396 MKAEYFPPKVEIILQN-EIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
+......||...-..= ...++++++++|.+++... .+|.. ....+++||.+=-. .+..+...-...++++++.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~-~~~~l~~GD~~~iP---~g~~H~i~N~G~e~l~fL~i 322 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNA-RTFDYQAGDVGYVP---RNMGHYVENTGDETLVFLEV 322 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcE-EEEEECCCCEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 4556678888765433 3367899999999988753 23332 34568999953322 12333222223345666655
No 99
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=24.12 E-value=1.8e+02 Score=29.08 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=19.7
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhhHHH
Q 008913 170 LNLLRLWRLRRVGELFTRLEKDIRFTY 196 (549)
Q Consensus 170 l~llrllRl~ri~~~~~~l~~~~~~~~ 196 (549)
+-++|++|+.|++|+++--+....+..
T Consensus 323 lAILRViRLVRVFRIFKLSRHSkGLQI 349 (507)
T KOG1545|consen 323 LAILRVIRLVRVFRIFKLSRHSKGLQI 349 (507)
T ss_pred HHHHHHHHHHHHhhheeeccccchHHH
Confidence 567888888888888876555555543
No 100
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=23.84 E-value=3.5e+02 Score=20.92 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=39.2
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
.....+.||..+=.....+....+|++|.... .++ .+.+|++.=.. .....+.++.+.|.++.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~------~~~~G~~~~~p-----~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG------RYGAGDWLRLP-----PGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC------EEETTEEEEE------TTEEEEEEESSCEEEEE
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc------cCCCCeEEEeC-----CCCccccCcCCCEEEEE
Confidence 34466788877776666777788999998853 222 35777764322 22345666788888875
No 101
>PRK11171 hypothetical protein; Provisional
Probab=23.79 E-value=3.6e+02 Score=25.99 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=36.7
Q ss_pred cccccccCCCCEEEec-CCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 395 EMKAEYFPPKVEIILQ-NEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 395 ~~~~~~~~~~e~I~~~-g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
.+....++||..+-.. .....+.++|++|++.+.. +|+ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~---~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND---WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 4556778999998763 5556689999999999865 554 35789999643
No 102
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=23.16 E-value=2e+02 Score=27.01 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=44.7
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCC---------eeeEEEEcce
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIP---------QPFTVRTKRL 467 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~---------~~~~v~a~~~ 467 (549)
+.....+|+..-..-...+...++++|++.+.. .|. ....++. ..+.|.+.| +.+++.|.++
T Consensus 32 ~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~--~g~--~f~~iG~-----R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 32 RLLRLAAGESATEETGDRERCLVLVTGKATVSA--HGS--TFGEIGT-----RMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred EEEEccCCCcccccCCCceEEEEEEeeeEEEee--ccc--hHhhccc-----ccccccCCCCCeEEecCCceEEEEeecc
Confidence 344567888776555555567788999998875 221 1111221 223444433 6789999999
Q ss_pred EEEEEeCHHH
Q 008913 468 SQVIRLSHHH 477 (549)
Q Consensus 468 ~~l~~i~~~~ 477 (549)
+++.+.+.-.
T Consensus 103 ~~vAvC~AP~ 112 (270)
T COG3718 103 LEVAVCSAPG 112 (270)
T ss_pred eEEEEEeCCC
Confidence 9988776544
No 103
>PRK08156 type III secretion system protein SpaS; Validated
Probab=22.85 E-value=8.1e+02 Score=24.89 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=10.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH
Q 008913 317 NEILRYGSKNRLPEGLREQMLA 338 (549)
Q Consensus 317 ~~i~~~~~~~~i~~~l~~rv~~ 338 (549)
+++++-.|+..=+++++.|.++
T Consensus 213 qEvKdE~Ke~EGdP~iK~r~R~ 234 (361)
T PRK08156 213 QEVKREYKEQEGNPEIKSKRRE 234 (361)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 4445544555445555444443
No 104
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=22.28 E-value=2.6e+02 Score=23.14 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=28.1
Q ss_pred cCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 401 ~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
+.||..=...++ ++++-|++|.+.+.. ++|+ ...+++||.|=
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~-d~Ge---~v~~~aGD~~~ 93 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTP-DGGE---PVEVRAGDSFV 93 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEEC-CCCe---EEEEcCCCEEE
Confidence 355555444444 678889999998864 4453 34689999653
No 105
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=22.14 E-value=8.9e+02 Score=25.06 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=16.1
Q ss_pred HHHHHhhccchhhhhhhccc
Q 008913 129 KIALRYVTRLWFTMDVASTL 148 (549)
Q Consensus 129 ~i~~~Yl~~~~f~~Dlis~i 148 (549)
+..++|++++|.++|++.++
T Consensus 234 ~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 234 REGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HhhhHHhhhcCcHHHHHHHH
Confidence 33478999999999998765
No 106
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=22.11 E-value=8.3e+02 Score=24.69 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008913 278 VFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLA 338 (549)
Q Consensus 278 ~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~ 338 (549)
+...+..+++.++.++++-.+.+..-+...-.++.+=..+++++-.|+..=+|+++.|.++
T Consensus 179 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~ 239 (349)
T PRK12721 179 VSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 3344444444444444443333443332222222222234455555555555555444443
No 107
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=21.32 E-value=8.8e+02 Score=25.68 Aligned_cols=51 Identities=8% Similarity=0.372 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHH-HHhhhhhhhcccccccccCCchhHHHHHHHHHH
Q 008913 208 TLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYS-IYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLF 286 (549)
Q Consensus 208 ~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~s-ly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~ 286 (549)
+.++.+|..+++|..+. .|...+-| ++|++.+ |++......|.+..+....
T Consensus 123 i~~~~~W~~~~FYv~~e---------------------lw~~~vvS~lFW~fan-------di~t~~qakRfy~l~~~ga 174 (472)
T TIGR00769 123 IAILRIWSFALFYVMAE---------------------LWGSVVLSLLFWGFAN-------QITTIDEAKRFYALFGLGA 174 (472)
T ss_pred HHHHhhhhHHHHHHHHH---------------------HHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHH
Confidence 33566888888887773 44567777 9999874 6666677778877766554
No 108
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=21.16 E-value=8.6e+02 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=30.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 270 HAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (549)
Q Consensus 270 ~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~ 303 (549)
.|+.+..++.+.++.++++++.|...+++++.+.
T Consensus 630 nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 630 NPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778899999999999999999999999988764
No 109
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=20.02 E-value=3.2e+02 Score=28.09 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccc--cccccCCchhHHHHH
Q 008913 204 LICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGY--GDLHAVNTGEKVFNM 281 (549)
Q Consensus 204 l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGy--gdi~p~t~~e~~~~i 281 (549)
.....+++.-.....++..+. ++............+.+.++++++|.|+ +|..--++..+++.+
T Consensus 200 ~~~~~~~l~~~~~i~~~l~~~--------------~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~ 265 (390)
T TIGR00933 200 RLFVTFLLLAIGFILFLLLER--------------GNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLL 265 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------cccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHH
Q ss_pred HHHHHH
Q 008913 282 LYMLFN 287 (549)
Q Consensus 282 ~~~l~g 287 (549)
++|++|
T Consensus 266 ~lMfIG 271 (390)
T TIGR00933 266 LLMFIG 271 (390)
T ss_pred HHHHHc
Done!