Query 008913
Match_columns 549
No_of_seqs 305 out of 3106
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 2.5E-42 8.7E-47 350.0 9.7 348 53-504 3-353 (355)
2 2ptm_A Hyperpolarization-activ 100.0 3.2E-33 1.1E-37 259.3 21.4 195 304-501 2-196 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 1.1E-32 3.7E-37 256.6 23.5 198 304-505 3-200 (202)
4 3ukn_A Novel protein similar t 100.0 4.5E-33 1.6E-37 261.2 14.5 199 299-502 1-202 (212)
5 1orq_C Potassium channel; volt 99.9 4.9E-27 1.7E-31 221.4 15.0 207 62-304 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.9 1.3E-24 4.5E-29 227.8 11.4 232 46-307 166-433 (514)
7 4f8a_A Potassium voltage-gated 99.9 3.4E-21 1.1E-25 171.5 13.8 142 351-496 5-148 (160)
8 3mdp_A Cyclic nucleotide-bindi 99.8 2.4E-19 8.4E-24 155.9 13.1 131 372-502 5-139 (142)
9 3gyd_A CNMP-BD protein, cyclic 99.8 4.4E-19 1.5E-23 162.2 15.0 145 364-508 30-179 (187)
10 2pqq_A Putative transcriptiona 99.8 3.4E-19 1.2E-23 156.3 13.4 138 372-509 4-142 (149)
11 3ocp_A PRKG1 protein; serine/t 99.8 3.8E-19 1.3E-23 154.3 11.8 131 357-491 7-137 (139)
12 2z69_A DNR protein; beta barre 99.8 4.9E-19 1.7E-23 156.3 12.7 136 372-507 11-148 (154)
13 3idb_B CAMP-dependent protein 99.8 3.6E-19 1.2E-23 158.6 10.5 127 368-494 33-159 (161)
14 3dn7_A Cyclic nucleotide bindi 99.8 3.2E-18 1.1E-22 157.4 15.6 138 371-508 5-144 (194)
15 2a9h_A Voltage-gated potassium 99.8 1.1E-18 3.9E-23 151.9 11.2 86 208-309 59-144 (155)
16 4ev0_A Transcription regulator 99.8 5E-18 1.7E-22 158.8 15.3 134 375-508 1-135 (216)
17 3fx3_A Cyclic nucleotide-bindi 99.8 7.3E-18 2.5E-22 160.2 15.1 139 370-508 8-147 (237)
18 3d0s_A Transcriptional regulat 99.8 6.2E-18 2.1E-22 159.6 14.1 136 372-507 5-141 (227)
19 3e97_A Transcriptional regulat 99.8 7.6E-18 2.6E-22 159.4 14.3 137 372-508 5-142 (231)
20 1zyb_A Transcription regulator 99.7 1.8E-17 6.2E-22 157.0 15.7 137 372-508 17-157 (232)
21 1vp6_A CNBD, cyclic-nucleotide 99.7 6.5E-18 2.2E-22 146.2 11.3 127 371-503 9-135 (138)
22 3dv8_A Transcriptional regulat 99.7 2.2E-17 7.6E-22 154.9 14.8 135 373-507 3-140 (220)
23 3dkw_A DNR protein; CRP-FNR, H 99.7 1.1E-17 3.8E-22 157.7 11.6 136 372-507 8-145 (227)
24 3shr_A CGMP-dependent protein 99.7 3.4E-17 1.2E-21 161.4 14.6 138 369-506 153-292 (299)
25 3iwz_A CAP-like, catabolite ac 99.7 6.5E-17 2.2E-21 152.8 15.7 137 372-508 10-153 (230)
26 2gau_A Transcriptional regulat 99.7 3.6E-17 1.2E-21 154.9 13.8 131 377-507 14-145 (232)
27 2ih3_C Voltage-gated potassium 99.7 3.4E-17 1.2E-21 137.3 10.4 61 247-307 59-119 (122)
28 3shr_A CGMP-dependent protein 99.7 2.4E-17 8.4E-22 162.4 11.3 146 352-501 18-163 (299)
29 3pna_A CAMP-dependent protein 99.7 5.4E-17 1.8E-21 143.3 11.8 119 369-491 34-152 (154)
30 1wgp_A Probable cyclic nucleot 99.7 8.8E-18 3E-22 145.2 6.1 118 373-490 6-134 (137)
31 4ava_A Lysine acetyltransferas 99.7 1.6E-16 5.6E-21 159.0 15.7 129 372-502 12-141 (333)
32 3ryp_A Catabolite gene activat 99.7 2.7E-16 9.2E-21 146.3 14.8 129 379-507 2-132 (210)
33 2oz6_A Virulence factor regula 99.7 4.3E-16 1.5E-20 144.6 15.3 123 384-506 1-128 (207)
34 2d93_A RAP guanine nucleotide 99.7 3.3E-17 1.1E-21 141.0 6.1 123 362-488 5-129 (134)
35 3rvy_A ION transport protein; 99.7 1E-16 3.6E-21 156.4 10.4 205 62-307 31-244 (285)
36 3of1_A CAMP-dependent protein 99.7 2.6E-16 8.9E-21 150.2 13.0 146 371-520 5-150 (246)
37 4h33_A LMO2059 protein; bilaye 99.7 9E-17 3.1E-21 137.5 8.2 93 249-341 43-135 (137)
38 3tnp_B CAMP-dependent protein 99.7 8.1E-17 2.8E-21 165.7 8.7 155 367-521 139-293 (416)
39 2fmy_A COOA, carbon monoxide o 99.7 2.6E-16 8.8E-21 147.7 10.7 128 373-507 4-131 (220)
40 3vou_A ION transport 2 domain 99.7 1.7E-15 5.8E-20 131.9 14.4 112 202-335 27-148 (148)
41 3kcc_A Catabolite gene activat 99.6 1.3E-15 4.5E-20 146.8 14.6 126 382-507 55-182 (260)
42 2qcs_B CAMP-dependent protein 99.6 1.1E-15 3.9E-20 149.7 14.1 147 369-519 35-181 (291)
43 1ft9_A Carbon monoxide oxidati 99.6 3.7E-16 1.3E-20 146.9 9.7 127 375-508 2-128 (222)
44 1o5l_A Transcriptional regulat 99.6 6.6E-16 2.2E-20 144.2 11.0 131 377-507 3-135 (213)
45 2qcs_B CAMP-dependent protein 99.6 2.5E-15 8.7E-20 147.3 15.3 129 369-497 153-283 (291)
46 3of1_A CAMP-dependent protein 99.6 2.6E-15 8.8E-20 143.2 13.2 117 370-489 122-238 (246)
47 4din_B CAMP-dependent protein 99.6 8.2E-16 2.8E-20 156.6 9.1 146 369-518 126-271 (381)
48 4din_B CAMP-dependent protein 99.6 2E-15 6.9E-20 153.7 11.6 132 369-500 244-377 (381)
49 3tnp_B CAMP-dependent protein 99.6 1.8E-15 6.2E-20 155.6 11.0 137 371-507 265-408 (416)
50 3eff_K Voltage-gated potassium 99.6 4.9E-15 1.7E-19 127.7 11.5 91 200-306 7-97 (139)
51 3e6c_C CPRK, cyclic nucleotide 99.6 2.8E-15 9.4E-20 143.6 10.8 130 375-507 11-141 (250)
52 1o7f_A CAMP-dependent RAP1 gua 99.6 8.8E-16 3E-20 161.2 6.3 136 358-494 27-165 (469)
53 3la7_A Global nitrogen regulat 99.6 2.3E-14 8E-19 136.5 14.8 121 386-506 30-156 (243)
54 2bgc_A PRFA; bacterial infecti 99.6 3.4E-14 1.2E-18 134.9 14.5 125 382-507 2-132 (238)
55 2k1e_A Water soluble analogue 99.5 1.1E-14 3.7E-19 118.2 7.4 91 201-307 8-98 (103)
56 1o7f_A CAMP-dependent RAP1 gua 99.5 4E-14 1.4E-18 148.6 13.1 125 369-496 333-459 (469)
57 4f7z_A RAP guanine nucleotide 99.5 7E-14 2.4E-18 159.8 11.6 120 369-489 38-160 (999)
58 2q67_A Potassium channel prote 99.5 3E-13 1E-17 111.6 12.1 61 249-309 49-109 (114)
59 3cf6_E RAP guanine nucleotide 99.5 2.6E-13 8.8E-18 147.5 12.9 135 352-490 12-148 (694)
60 3b02_A Transcriptional regulat 99.4 4.5E-13 1.5E-17 122.9 12.3 102 399-507 2-104 (195)
61 3ldc_A Calcium-gated potassium 99.4 1.1E-12 3.8E-17 101.2 9.6 54 249-302 28-81 (82)
62 3ouf_A Potassium channel prote 99.4 1.8E-12 6.1E-17 103.5 10.7 81 202-304 7-87 (97)
63 2zcw_A TTHA1359, transcription 99.4 2E-12 6.8E-17 119.3 10.1 107 392-506 1-110 (202)
64 4f7z_A RAP guanine nucleotide 99.3 3.6E-12 1.2E-16 145.8 13.3 113 369-484 333-447 (999)
65 3pjs_K KCSA, voltage-gated pot 99.3 3.3E-15 1.1E-19 132.5 -9.6 63 247-309 65-127 (166)
66 4dxw_A Navrh, ION transport pr 99.2 6.4E-11 2.2E-15 111.4 12.3 205 62-304 13-225 (229)
67 1xl4_A Inward rectifier potass 99.2 5.1E-11 1.8E-15 115.3 9.0 58 247-304 80-137 (301)
68 1p7b_A Integral membrane chann 99.1 1.2E-10 4.1E-15 113.9 7.7 59 248-306 95-153 (333)
69 2qks_A KIR3.1-prokaryotic KIR 99.1 6E-10 2.1E-14 108.6 10.8 58 249-306 78-135 (321)
70 3um7_A Potassium channel subfa 99.0 1.3E-09 4.5E-14 104.9 11.5 56 249-304 115-170 (309)
71 3um7_A Potassium channel subfa 98.9 2.1E-09 7.3E-14 103.4 8.7 59 249-307 224-288 (309)
72 3sya_A G protein-activated inw 98.9 8.7E-09 3E-13 100.4 11.3 93 207-306 52-150 (340)
73 4gx0_A TRKA domain protein; me 98.8 8.6E-09 2.9E-13 110.3 10.5 86 200-302 19-105 (565)
74 3ukm_A Potassium channel subfa 98.8 1.6E-08 5.3E-13 95.9 10.8 54 249-302 93-146 (280)
75 3ukm_A Potassium channel subfa 98.8 1.2E-08 4.2E-13 96.6 9.3 56 249-304 201-263 (280)
76 3spc_A Inward-rectifier K+ cha 98.8 2.1E-08 7E-13 97.9 9.5 94 206-306 53-153 (343)
77 2kyh_A KVAP, voltage-gated pot 98.7 1.6E-08 5.4E-13 86.9 7.1 102 62-186 22-125 (147)
78 1ors_C Potassium channel; volt 98.7 2.8E-08 9.5E-13 84.2 7.6 79 61-155 6-86 (132)
79 1lnq_A MTHK channels, potassiu 98.5 1.2E-08 4E-13 101.8 -1.3 57 249-305 45-101 (336)
80 3kg2_A Glutamate receptor 2; I 86.0 1 3.4E-05 49.8 6.9 56 248-304 562-617 (823)
81 3fjs_A Uncharacterized protein 71.4 18 0.00063 28.4 8.2 66 397-472 39-104 (114)
82 2ozj_A Cupin 2, conserved barr 68.6 15 0.0005 28.8 7.1 63 401-473 45-107 (114)
83 3rns_A Cupin 2 conserved barre 68.3 20 0.00067 32.4 8.7 68 396-473 39-106 (227)
84 2pfw_A Cupin 2, conserved barr 65.7 20 0.00069 27.9 7.4 67 397-473 37-103 (116)
85 3lwc_A Uncharacterized protein 65.1 46 0.0016 26.4 9.4 66 398-473 44-109 (119)
86 1yhf_A Hypothetical protein SP 59.6 42 0.0014 25.9 8.3 67 397-473 43-109 (115)
87 1orq_C Potassium channel; volt 59.0 21 0.00073 31.9 7.1 17 167-183 99-115 (223)
88 3jzv_A Uncharacterized protein 53.8 30 0.001 29.4 6.7 45 399-448 58-102 (166)
89 1v70_A Probable antibiotics sy 53.5 51 0.0017 24.5 7.6 68 398-473 32-100 (105)
90 2gu9_A Tetracenomycin polyketi 51.4 49 0.0017 25.2 7.3 46 398-448 25-73 (113)
91 4f4l_A ION transport protein; 48.8 62 0.0021 25.3 7.4 57 247-303 36-98 (112)
92 3es1_A Cupin 2, conserved barr 47.5 21 0.00073 30.6 4.7 67 399-473 84-150 (172)
93 1zvf_A 3-hydroxyanthranilate 3 47.4 30 0.001 29.6 5.4 58 413-475 53-113 (176)
94 3ibm_A Cupin 2, conserved barr 47.0 72 0.0025 26.9 8.1 68 398-473 60-128 (167)
95 3rns_A Cupin 2 conserved barre 45.0 61 0.0021 29.0 7.7 67 396-472 155-222 (227)
96 1dgw_A Canavalin; duplicated s 44.8 30 0.001 29.8 5.3 52 396-448 43-94 (178)
97 3h8u_A Uncharacterized conserv 44.3 63 0.0021 25.4 7.0 69 397-472 42-111 (125)
98 4e2g_A Cupin 2 conserved barre 43.8 41 0.0014 26.5 5.8 77 396-482 43-123 (126)
99 1yfu_A 3-hydroxyanthranilate-3 43.7 38 0.0013 29.0 5.5 37 413-450 54-90 (174)
100 2bnm_A Epoxidase; oxidoreducta 42.1 47 0.0016 28.8 6.3 70 400-473 123-196 (198)
101 1o5u_A Novel thermotoga mariti 41.5 1.2E+02 0.0039 23.2 8.4 45 398-448 35-79 (101)
102 4dxw_A Navrh, ION transport pr 41.0 27 0.00092 31.4 4.6 17 89-105 74-90 (229)
103 3es4_A Uncharacterized protein 40.5 35 0.0012 27.1 4.6 45 401-450 49-93 (116)
104 1fi2_A Oxalate oxidase, germin 40.4 1.2E+02 0.0041 26.4 8.8 53 396-448 74-130 (201)
105 2f4p_A Hypothetical protein TM 39.0 99 0.0034 25.3 7.6 69 398-473 52-120 (147)
106 1sfn_A Conserved hypothetical 39.0 82 0.0028 28.6 7.7 70 395-472 166-236 (246)
107 2fqp_A Hypothetical protein BP 38.4 36 0.0012 25.5 4.4 70 398-473 22-92 (97)
108 3kgz_A Cupin 2 conserved barre 38.2 55 0.0019 27.4 5.9 44 399-447 49-92 (156)
109 1o4t_A Putative oxalate decarb 37.2 86 0.0029 25.1 6.8 45 398-447 61-106 (133)
110 1vj2_A Novel manganese-contain 36.0 74 0.0025 25.2 6.1 67 399-473 53-119 (126)
111 1j58_A YVRK protein; cupin, de 35.9 1.2E+02 0.0042 29.4 8.9 74 396-473 259-334 (385)
112 3i7d_A Sugar phosphate isomera 35.7 64 0.0022 27.1 5.9 46 398-448 47-94 (163)
113 4i4a_A Similar to unknown prot 35.5 1E+02 0.0035 24.1 7.0 77 399-483 39-117 (128)
114 2qnk_A 3-hydroxyanthranilate 3 34.2 53 0.0018 30.4 5.3 60 411-476 48-107 (286)
115 1ors_C Potassium channel; volt 33.3 26 0.0009 28.5 2.9 15 170-184 97-111 (132)
116 3bcw_A Uncharacterized protein 33.1 37 0.0013 27.2 3.7 45 401-450 56-100 (123)
117 4axo_A EUTQ, ethanolamine util 33.0 1.5E+02 0.0051 24.6 7.6 51 413-473 83-133 (151)
118 3d0j_A Uncharacterized protein 32.4 62 0.0021 26.6 4.8 63 409-476 45-110 (140)
119 2vpv_A Protein MIF2, MIF2P; nu 31.7 1.1E+02 0.0036 26.1 6.5 52 413-472 109-160 (166)
120 2pyt_A Ethanolamine utilizatio 31.3 1.4E+02 0.0046 24.1 7.0 63 399-473 62-124 (133)
121 2i45_A Hypothetical protein; n 31.2 35 0.0012 26.1 3.2 66 402-477 36-102 (107)
122 1j58_A YVRK protein; cupin, de 31.0 75 0.0026 31.0 6.4 51 396-447 81-132 (385)
123 2vqa_A SLL1358 protein, MNCA; 30.7 1.3E+02 0.0045 28.8 8.1 52 396-448 236-289 (361)
124 3bu7_A Gentisate 1,2-dioxygena 30.4 99 0.0034 30.4 7.0 79 397-483 297-376 (394)
125 2lcm_A Voltage-dependent N-typ 30.2 52 0.0018 18.7 2.9 20 169-188 5-24 (28)
126 2b8m_A Hypothetical protein MJ 30.1 85 0.0029 24.2 5.5 67 400-473 33-99 (117)
127 2vqa_A SLL1358 protein, MNCA; 30.0 1.6E+02 0.0053 28.3 8.5 50 398-448 56-107 (361)
128 1y9q_A Transcriptional regulat 30.0 1.5E+02 0.0052 25.2 7.7 44 399-447 109-154 (192)
129 3cew_A Uncharacterized cupin p 29.9 1.3E+02 0.0043 23.5 6.6 66 399-472 31-98 (125)
130 3d82_A Cupin 2, conserved barr 29.5 1.2E+02 0.0039 22.4 6.1 50 415-474 51-100 (102)
131 1lr5_A Auxin binding protein 1 29.1 1.1E+02 0.0036 25.5 6.2 51 398-448 45-99 (163)
132 2qjv_A Uncharacterized IOLB-li 29.1 1.3E+02 0.0046 27.7 7.1 77 396-476 31-111 (270)
133 2r9r_B Paddle chimera voltage 29.1 52 0.0018 33.8 4.9 23 171-193 306-328 (514)
134 4b29_A Dimethylsulfoniopropion 28.9 87 0.003 27.9 5.6 45 400-448 138-182 (217)
135 2cav_A Protein (canavalin); vi 28.5 65 0.0022 32.4 5.4 53 395-448 87-139 (445)
136 2xp1_A SPT6; transcription, IW 28.1 90 0.0031 26.9 5.5 37 377-419 13-49 (178)
137 3c3v_A Arachin ARAH3 isoform; 27.8 94 0.0032 31.7 6.5 60 389-448 367-428 (510)
138 2d5f_A Glycinin A3B4 subunit; 27.4 1.1E+02 0.0038 31.1 6.9 62 389-450 362-425 (493)
139 3h7j_A Bacilysin biosynthesis 27.4 1.3E+02 0.0044 27.1 6.9 66 399-472 150-216 (243)
140 3lag_A Uncharacterized protein 26.3 16 0.00055 28.0 0.4 50 396-447 19-69 (98)
141 1sfn_A Conserved hypothetical 26.1 2.3E+02 0.008 25.4 8.4 63 399-473 55-117 (246)
142 2kyh_A KVAP, voltage-gated pot 26.0 60 0.0021 26.9 3.9 17 170-186 106-122 (147)
143 1fxz_A Glycinin G1; proglycini 26.0 1E+02 0.0035 31.2 6.4 55 394-448 338-394 (476)
144 2oa2_A BH2720 protein; 1017534 25.5 1.4E+02 0.0049 24.2 6.3 70 399-473 48-121 (148)
145 3pjz_A Potassium uptake protei 25.1 1E+02 0.0036 31.3 6.2 44 245-288 302-347 (494)
146 3l2h_A Putative sugar phosphat 25.0 1.6E+02 0.0054 24.3 6.6 45 398-447 50-96 (162)
147 2q30_A Uncharacterized protein 24.6 2.1E+02 0.007 21.3 6.8 66 398-472 37-104 (110)
148 3rvy_A ION transport protein; 24.4 82 0.0028 29.2 5.1 21 170-190 113-133 (285)
149 3h7j_A Bacilysin biosynthesis 24.3 1.7E+02 0.0059 26.2 7.1 70 396-473 36-106 (243)
150 3fz3_A Prunin; TREE NUT allerg 24.2 1.4E+02 0.0048 30.5 6.9 62 389-450 389-452 (531)
151 2kwv_A RAD30 homolog B, DNA po 23.2 17 0.00059 23.3 -0.0 18 351-368 17-34 (48)
152 4e2q_A Ureidoglycine aminohydr 23.1 91 0.0031 28.8 4.9 67 398-474 74-141 (266)
153 2o1q_A Putative acetyl/propion 22.6 1.3E+02 0.0044 24.6 5.4 71 396-473 46-116 (145)
154 1sq4_A GLXB, glyoxylate-induce 22.6 1E+02 0.0034 28.6 5.2 50 394-448 191-241 (278)
155 1uij_A Beta subunit of beta co 22.0 89 0.003 31.0 4.9 53 395-448 50-102 (416)
156 1x82_A Glucose-6-phosphate iso 21.9 2.5E+02 0.0087 24.0 7.5 56 415-473 97-152 (190)
157 1rc6_A Hypothetical protein YL 21.6 1.2E+02 0.0042 27.5 5.6 68 399-474 64-133 (261)
158 2pa7_A DTDP-6-deoxy-3,4-keto-h 21.3 2.5E+02 0.0087 22.9 6.8 87 402-495 43-131 (141)
159 2ea7_A 7S globulin-1; beta bar 21.2 1E+02 0.0034 30.8 5.2 53 395-448 62-114 (434)
160 2opk_A Hypothetical protein; p 21.2 96 0.0033 24.0 4.1 45 412-462 51-95 (112)
161 3ht1_A REMF protein; cupin fol 20.4 90 0.0031 25.0 4.0 32 414-448 59-90 (145)
162 1sef_A Conserved hypothetical 20.4 2.9E+02 0.0098 25.2 8.0 70 396-473 184-255 (274)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=2.5e-42 Score=349.95 Aligned_cols=348 Identities=15% Similarity=0.178 Sum_probs=146.3
Q ss_pred EcCCChhHHhHHHHHHHHHHHHHHHhhhhhhccccc--ccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHH
Q 008913 53 IAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKI 130 (549)
Q Consensus 53 i~P~s~~~~~W~~~~~~~~~~~~~~ip~~~~f~~~~--~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i 130 (549)
..|+|+. ++.+++++++.+++++..+....... ...+..++.++.++|++|+++++..+ +.
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~----------- 65 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR---RA----------- 65 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-----------
T ss_pred CCchhHH---HHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-----------
Confidence 4577775 47777777888887777764322111 11234456666667899999998533 10
Q ss_pred HHHhhccchhhhhhhcc-chHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 008913 131 ALRYVTRLWFTMDVAST-LPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTL 209 (549)
Q Consensus 131 ~~~Yl~~~~f~~Dlis~-iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~~~~~~~~l~~l~~~~l 209 (549)
...|.+++|+++|++++ +|++... .. .. ..++++|++|++|+.|..+.++.+.+.... ....+..+++.++
T Consensus 66 ~~~~~~~~~~i~Dl~~i~~p~~~~~--~~-~~---~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~--~~~~l~~~~~~~~ 137 (355)
T 3beh_A 66 GVVRDRTPKIAIDVLAVLVPLAAFL--LD-GS---PDWSLYCAVWLLKPLRDSTFFPVLGRVLAN--EARNLIGVTTLFG 137 (355)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHH--SC-CS---GGGGGGGGGGGSHHHHTCSSHHHHHHHHHH--THHHHHHHHHHHH
T ss_pred cceeccCcchHHHHHHHHHHHHHHH--hc-cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 13477778999999999 6886543 11 11 344555555555555544444443333221 1245666777777
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 008913 210 FAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIG 289 (549)
Q Consensus 210 ~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~ 289 (549)
+++|+.||++|.++.. .+++.+..|.+|+||+++|+|||||||+.|.|..|+++++++|++|++
T Consensus 138 ~~~~~~a~~~~~~e~~----------------~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~ 201 (355)
T 3beh_A 138 VVLFAVALAAYVIERD----------------IQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIG 201 (355)
T ss_dssp HHHHHHHHHHHHHHTT----------------TCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC----------------CCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHH
Confidence 8889999999988731 122345679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcccHHHHHhhCCHHHHHHHHHH
Q 008913 290 LTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQH 369 (549)
Q Consensus 290 ~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~ei~~~ 369 (549)
++++.+|.+++.+.+..++ +++.
T Consensus 202 ~~~~~~~~i~~~~~~~~~~----------------------------~~~~----------------------------- 224 (355)
T 3beh_A 202 IFGLWAGILATGFYQEVRR----------------------------GDFV----------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------------HHHH-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------------Hhhc-----------------------------
Confidence 9999999998766431100 0010
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEec
Q 008913 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449 (549)
Q Consensus 370 ~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe 449 (549)
...+.+++.|+|++++++.+++++..++.+.|+|||.|+++||.++++|+|.+|.|+++..+ ...+++|++|||
T Consensus 225 ~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe 298 (355)
T 3beh_A 225 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGE 298 (355)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEee
Confidence 02467888999999999999999999999999999999999999999999999999998632 247899999999
Q ss_pred hhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhh
Q 008913 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (549)
Q Consensus 450 ~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~ 504 (549)
.+++.+.++.++++|.++|+++.+++++|.++++++|++.+.+.+.+.+|+++..
T Consensus 299 ~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~~ 353 (355)
T 3beh_A 299 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAAA 353 (355)
T ss_dssp -------------------------------------------------------
T ss_pred hHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999888876654
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=3.2e-33 Score=259.31 Aligned_cols=195 Identities=17% Similarity=0.345 Sum_probs=184.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcccHHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 008913 304 HSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQG 383 (549)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~ 383 (549)
+.+.++.+|+++++.+++||+.+++|++|+.||++|++|.|+.++.+++++++.||++||.++..+.+.++++++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~ 81 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVG 81 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhc
Confidence 45788899999999999999999999999999999999999877888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEE
Q 008913 384 VSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVR 463 (549)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~ 463 (549)
++++++..++..++.+.|.|||+|+++||.++.+|||.+|.|+++. .+|+ .+..+++|++||+.+++.+.++.++++
T Consensus 82 l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~ 158 (198)
T 2ptm_A 82 ADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--IATSLSDGSYFGEICLLTRERRVASVK 158 (198)
T ss_dssp CCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--EEEEECTTCEESCHHHHHSSCCSSEEE
T ss_pred CCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--EEEEecCCCEechHHHcCCCccceEEE
Confidence 9999999999999999999999999999999999999999999986 4555 788999999999999999999999999
Q ss_pred EcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHH
Q 008913 464 TKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVK 501 (549)
Q Consensus 464 a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~ 501 (549)
|.++|+++.|++++|.++++++|++...+.+.+.+|++
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 159 CETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred EeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888877654
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=1.1e-32 Score=256.58 Aligned_cols=198 Identities=20% Similarity=0.305 Sum_probs=185.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcccHHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 008913 304 HSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQG 383 (549)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~ 383 (549)
+++.++.+|+++++.+++||+.+++|++|+.||++|++|.|+.++.+++++++.||++||.++..+.+.++++++|+|++
T Consensus 3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~ 82 (202)
T 3bpz_A 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFAN 82 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhc
Confidence 56788999999999999999999999999999999999999877889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEE
Q 008913 384 VSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVR 463 (549)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~ 463 (549)
++++++..++..++.+.|.||++|+++|+.++.+|||.+|.|+++. .+|++ ..+++|++||+.+++.+.++.++++
T Consensus 83 l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~---~~l~~G~~fGe~~~~~~~~~~~~v~ 158 (202)
T 3bpz_A 83 ADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE---MKLSDGSYFGEICLLTRGRRTASVR 158 (202)
T ss_dssp SCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC---EEEETTCEECHHHHHHCSBCSSEEE
T ss_pred CCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE---EEEcCCCEeccHHHhcCCCcccEEE
Confidence 9999999999999999999999999999999999999999999985 45553 3689999999999999999999999
Q ss_pred EcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhH
Q 008913 464 TKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (549)
Q Consensus 464 a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~ 505 (549)
|.++|+++.|++++|.++++++|++...+.+.+.++++...+
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~~~ 200 (202)
T 3bpz_A 159 ADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGK 200 (202)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC--
T ss_pred EeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999877654
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=4.5e-33 Score=261.21 Aligned_cols=199 Identities=19% Similarity=0.313 Sum_probs=178.4
Q ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh-cccHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q 008913 299 TNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEK 377 (549)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~ei~~~~~~~~l~~ 377 (549)
++++++.++++.+|+++++.+++||+.+++|++|+.||++||+|.|+.+ +.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 4577888999999999999999999999999999999999999999866 7888999999999999999999998887 8
Q ss_pred hhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCC-
Q 008913 378 TYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNI- 456 (549)
Q Consensus 378 ~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~- 456 (549)
+|+|++++++++..++..++.+.|.|||+|+++||.++.+|||.+|.|+++. +| ..+..+++|++||+.+++.+.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eEEEEecCCCCcCcHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999985 44 578999999999999999998
Q ss_pred -CeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHh
Q 008913 457 -PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (549)
Q Consensus 457 -~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~ 502 (549)
++.++++|.++|+++.|++++|.++++++|++...+++.+.+++..
T Consensus 156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999998877643
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.94 E-value=4.9e-27 Score=221.41 Aligned_cols=207 Identities=22% Similarity=0.289 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhh--cccccccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccch
Q 008913 62 WWQTFLVVLVVYSAWASPFELA--FRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (549)
Q Consensus 62 ~W~~~~~~~~~~~~~~ip~~~~--f~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~ 139 (549)
.||.+++++++++++.+.++.. +..+....+..+|.+++++|.+|+++|++++ + + +++|+|+
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~------~----~----~~~y~~~-- 72 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------G----D----PAGYVKK-- 72 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT------S----C----HHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc------c----c----HHHHHHH--
Confidence 4899999999999998877753 4444466788999999999999999999986 1 1 3799998
Q ss_pred hhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEK---DIRFTYFITRLSKLICVTLFAVHSAG 216 (549)
Q Consensus 140 f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~---~~~~~~~~~~l~~l~~~~l~~~h~~a 216 (549)
+++|+++++|++....... .. .....+|.+|++|+.|+.|+.+...+ .........++..++..++++.|+.|
T Consensus 73 ~iiDllailP~~~~~~~~~-~~---~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 148 (223)
T 1orq_C 73 TLYEIPALVPAGLLALIEG-HL---AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGA 148 (223)
T ss_dssp HHHHCTTHHHHHHHHHHHH-HH---HTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhc-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999987653110 00 11234555555555555555543222 11111111346667777788889999
Q ss_pred HHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 008913 217 CFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIG 296 (549)
Q Consensus 217 cl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~ 296 (549)
|++++++... .++...+|.+|+||+++|+|||||||++|.|+.|++++++.|++|++++|+.+|
T Consensus 149 ~~~~~~e~~~----------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~ 212 (223)
T 1orq_C 149 FAIYIVEYPD----------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG 212 (223)
T ss_dssp HHHHHTTSSS----------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876311 112235799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 008913 297 NMTNLIVH 304 (549)
Q Consensus 297 ~i~~~~~~ 304 (549)
.+++.+++
T Consensus 213 ~i~~~~~~ 220 (223)
T 1orq_C 213 TVSNMFQK 220 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.91 E-value=1.3e-24 Score=227.78 Aligned_cols=232 Identities=17% Similarity=0.241 Sum_probs=160.0
Q ss_pred cccCCeEEcCC-ChhHHhHHHHHHHHHHHHHHHhhhhhh--cccc--------------------------cccchhhHH
Q 008913 46 LRLKKYVIAPY-DYRYRWWQTFLVVLVVYSAWASPFELA--FRKA--------------------------ATGSLLIVD 96 (549)
Q Consensus 46 ~~~~~~ii~P~-s~~~~~W~~~~~~~~~~~~~~ip~~~~--f~~~--------------------------~~~~~~~~~ 96 (549)
++.+..+-+|. |....+|+.+++++++.+++++.++.. +... ....+.++|
T Consensus 166 ~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie 245 (514)
T 2r9r_B 166 RQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVE 245 (514)
T ss_dssp HHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHH
Confidence 33333444576 567788999999999999888877653 2111 133467899
Q ss_pred HHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccchhhhhhhccchHHHHHHHhcCCCCC---cchhhHHHHH
Q 008913 97 LVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHD---GRVFGFLNLL 173 (549)
Q Consensus 97 ~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~iP~~~~~~~~~~~~~~---~~~~~~l~ll 173 (549)
.++.++|++|++++++++ + + +.+|+|++|+++|+++++|+++........... ...+.++|++
T Consensus 246 ~i~~~iFtiE~ilR~~~~------~----~----k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvl 311 (514)
T 2r9r_B 246 TLCIIWFSFEFLVRFFAC------P----S----KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIF 311 (514)
T ss_dssp HHHHHHHHHHHHHHHHHS------S----C----SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC------C----c----HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Confidence 999999999999999876 1 1 158999999999999999998755432111000 0113455555
Q ss_pred HHHhHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhh
Q 008913 174 RLWRLRRVGELFTRLEKDIRF----TYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLG 249 (549)
Q Consensus 174 rllRl~ri~~~~~~l~~~~~~----~~~~~~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~ 249 (549)
|++|++|+.++.+.......+ ......+..+++.+++.++++||+.|+.+.. .+.+.+..
T Consensus 312 RllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~----------------~~~~~F~s 375 (514)
T 2r9r_B 312 RIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAD----------------ERDSQFPS 375 (514)
T ss_dssp HHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------------CTTCSCSS
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecc----------------CCCccccc
Confidence 555555555554432221111 1112234444555556667778877766421 12234467
Q ss_pred HHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Q 008913 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (549)
Q Consensus 250 Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~ 307 (549)
|..|+||+++|+|||||||+.|.|..+++++++++++|++++++++|.+.+.+.....
T Consensus 376 ~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887765444
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.86 E-value=3.4e-21 Score=171.50 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=125.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe
Q 008913 351 QEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY 430 (549)
Q Consensus 351 ~~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~ 430 (549)
.+++++.||++||.++..+++.+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 4669999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCceeeeEEecCCCeEechhhhcC--CCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHH
Q 008913 431 KNGAEQFLTKLGSADMAGEIGVIFN--IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNF 496 (549)
Q Consensus 431 ~~~~~~~~~~l~~G~~fGe~~~l~~--~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~ 496 (549)
+ +..+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.++++++|++...+++.+
T Consensus 84 -~--~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 -D--DEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -T--TEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -C--CEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 347889999999999999988 69999999999999999999999999999999888877665
No 8
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.80 E-value=2.4e-19 Score=155.90 Aligned_cols=131 Identities=15% Similarity=0.237 Sum_probs=117.0
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceee---eEEecCCCeE
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQF---LTKLGSADMA 447 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~---~~~l~~G~~f 447 (549)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.. +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 3568899999999999999999999999999999999999999999999999999986 34676777 9999999999
Q ss_pred echhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHh
Q 008913 448 GEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (549)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~ 502 (549)
|+.+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.+++.+
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877654
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.80 E-value=4.4e-19 Score=162.23 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEec
Q 008913 364 SSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLG 442 (549)
Q Consensus 364 ~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~ 442 (549)
.+.......+.++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++..+..++
T Consensus 30 ~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~ 109 (187)
T 3gyd_A 30 ADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVG 109 (187)
T ss_dssp GGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEcc
Confidence 3344455678899999999999999999999999999999999999999999999999999999974 578888999999
Q ss_pred CCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHH----HHHHHHHHhhhHhhh
Q 008913 443 SADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIM----NNFIQYVKGLKQEML 508 (549)
Q Consensus 443 ~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~----~~~~~~l~~~~~~~~ 508 (549)
+|++||+.+++.+.++.++++|.++|+++.|++++|.++++++|++...++ +.+.+|++...+++.
T Consensus 110 ~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~~~l~ 179 (187)
T 3gyd_A 110 AGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRIL 179 (187)
T ss_dssp TTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888 555566655554443
No 10
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.80 E-value=3.4e-19 Score=156.29 Aligned_cols=138 Identities=16% Similarity=0.277 Sum_probs=127.4
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEech
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~ 450 (549)
.+.++++++|.+++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 35688999999999999999999999999999999999999999999999999999874 46888889999999999999
Q ss_pred hhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhh
Q 008913 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLD 509 (549)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 509 (549)
+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.+++....+++.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 142 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTNDAMSD 142 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877765443
No 11
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.79 E-value=3.8e-19 Score=154.26 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=117.4
Q ss_pred hCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCcee
Q 008913 357 DLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQ 436 (549)
Q Consensus 357 ~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~ 436 (549)
++|+.+|.+.......+.++++++|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|++.. +| .
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g--~ 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EG--V 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TT--E
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CC--E
Confidence 5788888888888899999999999999999999999999999999999999999999999999999999965 55 3
Q ss_pred eeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHH
Q 008913 437 FLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKK 491 (549)
Q Consensus 437 ~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~ 491 (549)
.+..+++|++||+.+++.+.++.++++|.++|+++.|++++|.++++++|...+.
T Consensus 83 ~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 7889999999999999999999999999999999999999999999999987654
No 12
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.79 E-value=4.9e-19 Score=156.25 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=123.1
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEech
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~ 450 (549)
.+.+++.++|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 46789999999999999999999999999999999999999999999999999999863 46788889999999999999
Q ss_pred hhhcCCC-eeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 451 GVIFNIP-QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 451 ~~l~~~~-~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+++.+.++++...+++
T Consensus 91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~~~i 148 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEI 148 (154)
T ss_dssp GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999999999887776544
No 13
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.78 E-value=3.6e-19 Score=158.63 Aligned_cols=127 Identities=13% Similarity=0.333 Sum_probs=117.8
Q ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 368 QHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 368 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
.....+.++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++...+|++..+..+++|++|
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~f 112 (161)
T 3idb_B 33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF 112 (161)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEE
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEe
Confidence 35567889999999999999999999999999999999999999999999999999999998778888899999999999
Q ss_pred echhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHH
Q 008913 448 GEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMN 494 (549)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~ 494 (549)
|+.+++.+.++.++++|.++|+++.|++++|.++++++|.....+++
T Consensus 113 Ge~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 113 GELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp CGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred chHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 99999999999999999999999999999999999999987655443
No 14
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.78 E-value=3.2e-18 Score=157.37 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=127.4
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEec
Q 008913 371 FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGE 449 (549)
Q Consensus 371 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe 449 (549)
...++++++.|.+++++.++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++. ..+|++.++..+++|++||+
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge 84 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD 84 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence 35678889999999999999999999999999999999999999999999999999997 46788999999999999998
Q ss_pred h-hhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhh
Q 008913 450 I-GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEML 508 (549)
Q Consensus 450 ~-~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 508 (549)
. +++.+.|+.++++|.++|+++.+++++|.++++++|++...+.+.+.+++....+++.
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 144 (194)
T 3dn7_A 85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSK 144 (194)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 6889999999999999999999999999999999999999999999888877665543
No 15
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.77 E-value=1.1e-18 Score=151.95 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHH
Q 008913 208 TLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFN 287 (549)
Q Consensus 208 ~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g 287 (549)
+++++.+.|+++|+++... +++.+..|.+|+||+++|+|||||||++|.|..+++++++.+++|
T Consensus 59 ~~~~i~~~a~~~~~~E~~~----------------~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~G 122 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAERGA----------------PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAG 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTS----------------SCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC----------------CCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHH
Confidence 3334445677777666311 123345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcchHHH
Q 008913 288 IGLTAYIIGNMTNLIVHSAVRT 309 (549)
Q Consensus 288 ~~~~a~~i~~i~~~~~~~~~~~ 309 (549)
+++++++++.+++.+.+..+++
T Consensus 123 v~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 123 ITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp HHHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766543
No 16
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.77 E-value=5e-18 Score=158.85 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=123.4
Q ss_pred HhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhh
Q 008913 375 VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVI 453 (549)
Q Consensus 375 l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l 453 (549)
|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++.++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46789999999999999999999999999999999999999999999999999974 67888899999999999999999
Q ss_pred cCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhh
Q 008913 454 FNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEML 508 (549)
Q Consensus 454 ~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 508 (549)
.+.++.++++|.++|+++.+++++|.++++++|++...+++.+.+++....++..
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~ 135 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELD 135 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877665543
No 17
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.76 E-value=7.3e-18 Score=160.21 Aligned_cols=139 Identities=14% Similarity=0.217 Sum_probs=129.9
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEe
Q 008913 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 370 ~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fG 448 (549)
...+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 346789999999999999999999999999999999999999999999999999999997 4678888999999999999
Q ss_pred chhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhh
Q 008913 449 EIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEML 508 (549)
Q Consensus 449 e~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 508 (549)
+.+++.+.++.++++|.++|+++.+++++|.++++++|++...+++.+.+++....+++.
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~ 147 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLE 147 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988877765543
No 18
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.75 E-value=6.2e-18 Score=159.62 Aligned_cols=136 Identities=20% Similarity=0.354 Sum_probs=126.9
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEech
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~ 450 (549)
.+.++++|+|++++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.++..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 45688999999999999999999999999999999999999999999999999999874 57888899999999999999
Q ss_pred hhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.+++....+++
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 141 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNL 141 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887765543
No 19
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.75 E-value=7.6e-18 Score=159.43 Aligned_cols=137 Identities=19% Similarity=0.262 Sum_probs=126.3
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEech
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~ 450 (549)
.+.++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++.++..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 36789999999999999999999999999999999999999999999999999999874 57888899999999999999
Q ss_pred hhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhh
Q 008913 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEML 508 (549)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 508 (549)
+++.+.++.++++|.++|+++.+++++|.++++++|++...+++.+.+++....+++.
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~ 142 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI 142 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888877665543
No 20
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=1.8e-17 Score=157.04 Aligned_cols=137 Identities=11% Similarity=0.060 Sum_probs=127.7
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhc--ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEe
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSE--MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~--~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fG 448 (549)
...+.++|+|++++++.++.++.. ++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+++|++||
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 456889999999999999999998 9999999999999999999999999999999986 4578888999999999999
Q ss_pred chhhhcCCC-eeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhh
Q 008913 449 EIGVIFNIP-QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEML 508 (549)
Q Consensus 449 e~~~l~~~~-~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 508 (549)
+.+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+++.+.+++....+++.
T Consensus 97 ~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~ 157 (232)
T 1zyb_A 97 PQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLW 157 (232)
T ss_dssp GGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 999999999999999999999999999999999999999999887766544
No 21
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.74 E-value=6.5e-18 Score=146.15 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=116.4
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEech
Q 008913 371 FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 371 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~ 450 (549)
..+.++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. + ...+++|++||+.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~----~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--N----PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS--S----CEEECTTCEECHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeC--C----cceECCCCEeeeh
Confidence 456799999999999999999999999999999999999999999999999999999752 2 2478999999999
Q ss_pred hhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhh
Q 008913 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGL 503 (549)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~ 503 (549)
+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.+|++..
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~~ 135 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 135 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC--
T ss_pred HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999888886543
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.74 E-value=2.2e-17 Score=154.89 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=124.5
Q ss_pred HHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCe--Eec
Q 008913 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADM--AGE 449 (549)
Q Consensus 373 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~--fGe 449 (549)
++++++|+|++++++.++.+...++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 567899999999999999999999999999999999999999999999999999997 46788889999999999 789
Q ss_pred hhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 450 ~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
.+++.+.|+.++++|.++|+++.+++++|.++++++|++...+++.+.+++....++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 140 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLI 140 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887665443
No 23
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.73 E-value=1.1e-17 Score=157.75 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=126.6
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEech
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~ 450 (549)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 4678999999999999999999999999999999999999999999999999999986 457888889999999999999
Q ss_pred hhhcCCC-eeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 451 GVIFNIP-QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 451 ~~l~~~~-~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
+++.+.| +.++++|.++|+++.+++++|.++++++|++...+++.+.+++....+++
T Consensus 88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 145 (227)
T 3dkw_A 88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEI 145 (227)
T ss_dssp TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999988887655443
No 24
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.72 E-value=3.4e-17 Score=161.39 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=129.8
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEec--CCceeeeEEecCCCe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK--NGAEQFLTKLGSADM 446 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~l~~G~~ 446 (549)
..+...+++.++|+.++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++... +|++..+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 345678889999999999999999999999999999999999999999999999999999854 678888999999999
Q ss_pred EechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHh
Q 008913 447 AGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (549)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 506 (549)
||+.+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.+|++...++
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~~ 292 (299)
T 3shr_A 233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAEA 292 (299)
T ss_dssp ECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred eChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchhh
Confidence 999999999999999999999999999999999999999999999999999999887765
No 25
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.72 E-value=6.5e-17 Score=152.79 Aligned_cols=137 Identities=17% Similarity=0.281 Sum_probs=116.4
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEech
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~ 450 (549)
...+++.++|.+++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++.++..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 4568889999999999999999999999999999999999999999999999999997 457888899999999999999
Q ss_pred hhhcCC-CeeeEEEEcceEEEEEeCHHHHHhhhccC-----cchHHHHHHHHHHHHHhhhHhhh
Q 008913 451 GVIFNI-PQPFTVRTKRLSQVIRLSHHHLKQMVPID-----HGDGKKIMNNFIQYVKGLKQEML 508 (549)
Q Consensus 451 ~~l~~~-~~~~~v~a~~~~~l~~i~~~~f~~l~~~~-----p~~~~~~~~~~~~~l~~~~~~~~ 508 (549)
+++.+. ++.++++|.++|+++.+++++|.++++++ |++...+++.+.+++....+++.
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~ 153 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKAS 153 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875 79999999999999999999999999999 99999999999888877665543
No 26
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.72 E-value=3.6e-17 Score=154.86 Aligned_cols=131 Identities=8% Similarity=0.079 Sum_probs=120.4
Q ss_pred hhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcC
Q 008913 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFN 455 (549)
Q Consensus 377 ~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~ 455 (549)
++|+|++++++.++.++..++.+.|+||++|+++|++++.+|+|.+|.|+++. ..+|++.++..+++|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 67999999999999999999999999999999999999999999999999986 34688889999999999999999999
Q ss_pred CCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 456 IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 456 ~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
.++.++++|.++|+++.|++++|.++++++|++...+++.+.+++....+++
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 145 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRT 145 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887766554
No 27
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.71 E-value=3.4e-17 Score=137.26 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=56.3
Q ss_pred hhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Q 008913 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (549)
Q Consensus 247 ~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~ 307 (549)
..+|.+|+||+++|+|||||||++|.|..+++++++.+++|+.++++.+|.+++.+.+..+
T Consensus 59 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 59 LITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999998876443
No 28
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.71 E-value=2.4e-17 Score=162.41 Aligned_cols=146 Identities=16% Similarity=0.271 Sum_probs=129.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEec
Q 008913 352 EEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK 431 (549)
Q Consensus 352 ~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~ 431 (549)
.....++|+..|.+...+...+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|++..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 344567999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHH
Q 008913 432 NGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVK 501 (549)
Q Consensus 432 ~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~ 501 (549)
+| ..+..+.+|++||+.+++.+.|+.++++|.++|+++.|++++|.++++++|.........+.++..
T Consensus 96 ~g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 163 (299)
T 3shr_A 96 EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVP 163 (299)
T ss_dssp TT--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred CC--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCH
Confidence 55 478899999999999999999999999999999999999999999999998766555555444433
No 29
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.70 E-value=5.4e-17 Score=143.32 Aligned_cols=119 Identities=19% Similarity=0.341 Sum_probs=109.0
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
....+.++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++. +|. .+..+++|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~--~~~~~~~G~~fG 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--WATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE--EEEEECTTCEEC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE--EEEEecCCCEee
Confidence 3456789999999999999999999999999999999999999999999999999999987 443 678899999999
Q ss_pred chhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHH
Q 008913 449 EIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKK 491 (549)
Q Consensus 449 e~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~ 491 (549)
+.+++.+.++.++++|.++|+++.|++++|.++++++|.....
T Consensus 110 e~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 110 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp CHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred ehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 9999999999999999999999999999999999999865443
No 30
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.70 E-value=8.8e-18 Score=145.16 Aligned_cols=118 Identities=16% Similarity=0.264 Sum_probs=106.9
Q ss_pred HHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeE--EecCCCeEech
Q 008913 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT--KLGSADMAGEI 450 (549)
Q Consensus 373 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~--~l~~G~~fGe~ 450 (549)
+.++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|++....+|++..+. .+++|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 3577899999999999999999999999999999999999999999999999997655677776666 99999999999
Q ss_pred hh---hcCCC------eeeEEEEcceEEEEEeCHHHHHhhhccCcchHH
Q 008913 451 GV---IFNIP------QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGK 490 (549)
Q Consensus 451 ~~---l~~~~------~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~ 490 (549)
++ +.+.+ +.++++|.++|+++.|++++|.++++++|++..
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 95 77774 578999999999999999999999999998653
No 31
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.70 E-value=1.6e-16 Score=159.04 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=121.2
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEech
Q 008913 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 372 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~ 450 (549)
.+.++++|+|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|++ .+..+++|++||+.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence 46789999999999999999999999999999999999999999999999999999874 35554 88999999999999
Q ss_pred hhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHh
Q 008913 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (549)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~ 502 (549)
+++.+.++.++++|.++|+++.|++++|.+++ ++|++...+++.+.+++..
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~~ 141 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLAA 141 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 9999999999999988873
No 32
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.69 E-value=2.7e-16 Score=146.33 Aligned_cols=129 Identities=22% Similarity=0.339 Sum_probs=116.4
Q ss_pred hhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcCC-
Q 008913 379 YLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNI- 456 (549)
Q Consensus 379 ~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~~- 456 (549)
++++.++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++.++..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 3567799999999999999999999999999999999999999999999974 67888899999999999999999988
Q ss_pred CeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 457 PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 457 ~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
++.++++|.++|+++.+++++|.++++++|++...+++.+.+++....+++
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 132 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKV 132 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988887766543
No 33
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=4.3e-16 Score=144.57 Aligned_cols=123 Identities=18% Similarity=0.309 Sum_probs=112.9
Q ss_pred CCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCC----Ce
Q 008913 384 VSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNI----PQ 458 (549)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~----~~ 458 (549)
++++.++.++..++.+.|+||++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+++|++||+.+++.+. ++
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 5789999999999999999999999999999999999999999987 457888899999999999999999988 89
Q ss_pred eeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHh
Q 008913 459 PFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (549)
Q Consensus 459 ~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 506 (549)
.++++|.++|+++.|++++|.++++++|++...+++.+.+++....++
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~ 128 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRK 128 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888766554
No 34
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-17 Score=141.05 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccC-CCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEE
Q 008913 362 IRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFP-PKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTK 440 (549)
Q Consensus 362 Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~-~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~ 440 (549)
.|.+-......+.+++.++|..++++.++.++..++.+.|. +|++|+++|+.++.+|+|.+|.|+++. .+|++ ..
T Consensus 5 ~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~---~~ 80 (134)
T 2d93_A 5 SSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV---EN 80 (134)
T ss_dssp CCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE---EE
T ss_pred hcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE---EE
Confidence 33333334456778999999999999999999999999999 999999999999999999999999985 55654 56
Q ss_pred ecCCCeEechhhhcCCCeeeEE-EEcceEEEEEeCHHHHHhhhccCcch
Q 008913 441 LGSADMAGEIGVIFNIPQPFTV-RTKRLSQVIRLSHHHLKQMVPIDHGD 488 (549)
Q Consensus 441 l~~G~~fGe~~~l~~~~~~~~v-~a~~~~~l~~i~~~~f~~l~~~~p~~ 488 (549)
+++|++||+.+++.+.++.+++ +|.++|+++.|++++|.++++++++.
T Consensus 81 l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~ 129 (134)
T 2d93_A 81 LFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKS 129 (134)
T ss_dssp ECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSS
T ss_pred ecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhc
Confidence 8999999999999999999999 99999999999999999999998764
No 35
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.67 E-value=1e-16 Score=156.43 Aligned_cols=205 Identities=13% Similarity=0.157 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhc--ccccccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccch
Q 008913 62 WWQTFLVVLVVYSAWASPFELAF--RKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (549)
Q Consensus 62 ~W~~~~~~~~~~~~~~ip~~~~f--~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~ 139 (549)
.++.+++++++.+++.+.+...- .......+..+|.++.++|.+|+++++... | ++|++++|
T Consensus 31 ~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~------~----------~~y~~~~w 94 (285)
T 3rvy_A 31 FFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH------R----------ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------G----------GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h----------HHHHcCCh
Confidence 67888888888888887666422 122234567899999999999999999865 2 57999999
Q ss_pred hhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIR-FTYFITRLSKLICVTLFAVHSAGCF 218 (549)
Q Consensus 140 f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~-~~~~~~~l~~l~~~~l~~~h~~acl 218 (549)
.++|+++++|..+. .. ..+.++|++|++|++|+.+..+.++.... .....-.+..+++.++++.-.+|++
T Consensus 95 n~~Dl~~v~~~~i~-----~~----~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~ 165 (285)
T 3rvy_A 95 SLFDFFVVAISLVP-----TS----SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIM 165 (285)
T ss_dssp HHHHHHHHHHHHSC-----SS----SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHc-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887431 11 23445555555555555554433332111 1111122333444444444444544
Q ss_pred HHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhccccc-ccc-cCCchh----HHHHHHHHHHHHHHHH
Q 008913 219 YFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYG-DLH-AVNTGE----KVFNMLYMLFNIGLTA 292 (549)
Q Consensus 219 ~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGyg-di~-p~t~~e----~~~~i~~~l~g~~~~a 292 (549)
-+.+.. . ..++.+.++..|+||+++|+||+||| |+. |.+..+ +.++++++++|+++.+
T Consensus 166 g~~~f~---~-------------~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~ln 229 (285)
T 3rvy_A 166 ATQLFG---E-------------RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMIN 229 (285)
T ss_dssp HHHHHT---T-------------TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC---c-------------ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHH
Confidence 333321 0 11234678999999999999999999 985 776654 8889999999999999
Q ss_pred HHHHHHHHHHHcchH
Q 008913 293 YIIGNMTNLIVHSAV 307 (549)
Q Consensus 293 ~~i~~i~~~~~~~~~ 307 (549)
.++|.+.+-+.+..+
T Consensus 230 l~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 230 LVVAICVDAMAILNQ 244 (285)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888765443
No 36
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.6e-16 Score=150.16 Aligned_cols=146 Identities=17% Similarity=0.291 Sum_probs=126.1
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEech
Q 008913 371 FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 371 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~ 450 (549)
..+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +|+ .+..+++|++||+.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~--~~~~~~~g~~fGe~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDN--KVNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTS--CCEEECTTCEECHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCE--EEEecCCCCeeehh
Confidence 45788999999999999999999999999999999999999999999999999999985 444 46899999999999
Q ss_pred hhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhhcchHHHHHhhc
Q 008913 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSD 520 (549)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~ 520 (549)
+++.+.|+.++++|.++|+++.|++++|.+++.++|.........+.++.........+.+..+...+..
T Consensus 81 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~ 150 (246)
T 3of1_A 81 ALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDT 150 (246)
T ss_dssp HHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEE
T ss_pred HHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhhe
Confidence 9999999999999999999999999999999999998888777777766655554444444445444433
No 37
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.67 E-value=9e-17 Score=137.51 Aligned_cols=93 Identities=24% Similarity=0.362 Sum_probs=56.0
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhCCC
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRL 328 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 328 (549)
.|.+|+||+++|+|||||||++|.|..|++++++.+++|++++|++++.+++.+.+......+.++.....+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 58999999999999999999999999999999999999999999999999998876554433333222222223334455
Q ss_pred CHHHHHHHHHHHH
Q 008913 329 PEGLREQMLAHMQ 341 (549)
Q Consensus 329 ~~~l~~rv~~y~~ 341 (549)
+++....+++|++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 5555555665543
No 38
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.66 E-value=8.1e-17 Score=165.71 Aligned_cols=155 Identities=14% Similarity=0.307 Sum_probs=130.4
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCe
Q 008913 367 SQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADM 446 (549)
Q Consensus 367 ~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~ 446 (549)
......+.++++++|++++++.+..|+..++.+.|.+|++|+++|+.++.+|+|.+|.|+++...+|++..+..+++|++
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~ 218 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGS 218 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCE
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCE
Confidence 34556788999999999999999999999999999999999999999999999999999999877888889999999999
Q ss_pred EechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhhcchHHHHHhhcc
Q 008913 447 AGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDL 521 (549)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ 521 (549)
||+.+++.+.||.++++|.++|+++.|++++|.+++.++|......+..+.+++........+.+..+...+...
T Consensus 219 fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~ 293 (416)
T 3tnp_B 219 FGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTK 293 (416)
T ss_dssp ECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEE
T ss_pred EeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHHhhceEE
Confidence 999999999999999999999999999999999999999876655444444444444433333344444444333
No 39
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.66 E-value=2.6e-16 Score=147.70 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=118.7
Q ss_pred HHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhh
Q 008913 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGV 452 (549)
Q Consensus 373 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~ 452 (549)
.+++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++...+|++.++..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence 35678999999999999999999999999999999999999999999999999997667899999999999999999
Q ss_pred hcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 453 IFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 453 l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
++.++++|.++|+++.+++++|.++++++|++...+++.+.+++....+++
T Consensus 81 ----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 131 (220)
T 2fmy_A 81 ----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTII 131 (220)
T ss_dssp ----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999988887665543
No 40
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.65 E-value=1.7e-15 Score=131.91 Aligned_cols=112 Identities=22% Similarity=0.355 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHH
Q 008913 202 SKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNM 281 (549)
Q Consensus 202 ~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i 281 (549)
+..++.++++.+++++++|.... .| .|.+|+||+++|+|||||||++|.|..++++++
T Consensus 27 ~~~~~~~~~~~~~~g~~~~~~~e-------~~---------------~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~ 84 (148)
T 3vou_A 27 FQVLFVLTFLTLTSGTIFYSTVE-------GL---------------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTI 84 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-------CC---------------CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------CC---------------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHH
Confidence 44455555666677777775431 01 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHc----chHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 008913 282 LYMLFNIGLTAYIIGNMTN------LIVH----SAVRTLFMRNAINEILRYGSKNRLPEGLREQ 335 (549)
Q Consensus 282 ~~~l~g~~~~a~~i~~i~~------~~~~----~~~~~~~~~~~~~~i~~~~~~~~i~~~l~~r 335 (549)
+.+++|++++++.++.+++ +... .+....+..++++.+++++++++.|++|+.|
T Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 85 LYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999999999886 2222 2334445567788899999999999998765
No 41
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.65 E-value=1.3e-15 Score=146.79 Aligned_cols=126 Identities=22% Similarity=0.353 Sum_probs=114.6
Q ss_pred cCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcCC-Cee
Q 008913 382 QGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNI-PQP 459 (549)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~~-~~~ 459 (549)
..++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++.++..+++|++||+.+++.+. ++.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 4589999999999999999999999999999999999999999999974 67888899999999999999999988 899
Q ss_pred eEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 460 FTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 460 ~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
++++|.++|+++.|++++|.++++++|++...+++.+.+++....+++
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~ 182 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKV 182 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887766553
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.64 E-value=1.1e-15 Score=149.72 Aligned_cols=147 Identities=19% Similarity=0.299 Sum_probs=127.0
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
....+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| ..+..+++|++||
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g--~~~~~l~~G~~fG 110 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NN--EWATSVGEGGSFG 110 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TT--EEEEEECTTCEEC
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CC--eEEEEcCCCCccc
Confidence 4557789999999999999999999999999999999999999999999999999999987 55 4688999999999
Q ss_pred chhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhhcchHHHHHhh
Q 008913 449 EIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLS 519 (549)
Q Consensus 449 e~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~ 519 (549)
+.+++.+.++.++++|.++|+++.|++++|.+++.++|.....++..+.+++........+.+..+...+.
T Consensus 111 e~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~ 181 (291)
T 2qcs_B 111 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALE 181 (291)
T ss_dssp GGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCE
T ss_pred hHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHHhhcE
Confidence 99999999999999999999999999999999999999988888877776665544433333334444433
No 43
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.64 E-value=3.7e-16 Score=146.86 Aligned_cols=127 Identities=10% Similarity=0.033 Sum_probs=118.1
Q ss_pred HhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhc
Q 008913 375 VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIF 454 (549)
Q Consensus 375 l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~ 454 (549)
++++|+|++++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++...+|++.++..+++|++||
T Consensus 2 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG------ 75 (222)
T 1ft9_A 2 PPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC------ 75 (222)
T ss_dssp CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE------
T ss_pred cccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec------
Confidence 56789999999999999999999999999999999999999999999999999866788888999999999999
Q ss_pred CCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhh
Q 008913 455 NIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEML 508 (549)
Q Consensus 455 ~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 508 (549)
.++.++++|.++|+++.|++++|.++++++|++...+++.+.+++....+++.
T Consensus 76 -~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~ 128 (222)
T 1ft9_A 76 -MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIE 128 (222)
T ss_dssp -SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999988877665543
No 44
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.64 E-value=6.6e-16 Score=144.18 Aligned_cols=131 Identities=9% Similarity=0.084 Sum_probs=112.4
Q ss_pred hhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcC
Q 008913 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFN 455 (549)
Q Consensus 377 ~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~ 455 (549)
.-|.|+..++.....+...++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+++|++||+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~ 82 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS 82 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence 34778888889999999999999999999999999999999999999999987 45788889999999999999999887
Q ss_pred C-CeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 456 I-PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 456 ~-~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
. ++.++++|.++|+++.+++++|.++++++|++...+++.+.+++....+++
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~ 135 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKL 135 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999999999999999999999988887665443
No 45
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.63 E-value=2.5e-15 Score=147.26 Aligned_cols=129 Identities=16% Similarity=0.289 Sum_probs=115.9
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEec-CC-ceeeeEEecCCCe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NG-AEQFLTKLGSADM 446 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~-~~-~~~~~~~l~~G~~ 446 (549)
.+...++.+.++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|++.... +| ++..+..+++|++
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~ 232 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDY 232 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCE
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCE
Confidence 344567788999999999999999999999999999999999999999999999999998632 33 4568999999999
Q ss_pred EechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHH
Q 008913 447 AGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFI 497 (549)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~ 497 (549)
|||.+++.+.++.++++|.++|+++.|++++|.+++.++|++...+++.+.
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 233 FGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp ECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred ecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766665554
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.6e-15 Score=143.20 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=107.9
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEec
Q 008913 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449 (549)
Q Consensus 370 ~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe 449 (549)
.....+++.++|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++...++ .+..+++|++|||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~~~~l~~g~~fGe 198 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---VINKLKDHDYFGE 198 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---EEEEEETTCEECH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---eEEEcCCCCcccH
Confidence 4456788899999999999999999999999999999999999999999999999999873322 7889999999999
Q ss_pred hhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchH
Q 008913 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDG 489 (549)
Q Consensus 450 ~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~ 489 (549)
.+++.+.||.++++|.++|+++.|++++|.+++..+|++.
T Consensus 199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999988653
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.61 E-value=8.2e-16 Score=156.56 Aligned_cols=146 Identities=19% Similarity=0.282 Sum_probs=127.3
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
....+.++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++. +|+ .+..+++|++||
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~--~v~~l~~G~~fG 201 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE--WVTNISEGGSFG 201 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE--EEEEEESSCCBC
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe--EeeeCCCCCEEE
Confidence 4456789999999999999999999999999999999999999999999999999999996 443 678899999999
Q ss_pred chhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhhhhcchHHHHHh
Q 008913 449 EIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELL 518 (549)
Q Consensus 449 e~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 518 (549)
+.+++.+.|+.++++|.++|+++.|++++|.+++.++|.....++..+.+++..........+..+...+
T Consensus 202 e~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~ 271 (381)
T 4din_B 202 ELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADAL 271 (381)
T ss_dssp GGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTC
T ss_pred chHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998888888777776555544444444444433
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=153.67 Aligned_cols=132 Identities=17% Similarity=0.306 Sum_probs=118.6
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEec-CC-ceeeeEEecCCCe
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NG-AEQFLTKLGSADM 446 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~-~~-~~~~~~~l~~G~~ 446 (549)
.++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++... +| .+..+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 445678889999999999999999999999999999999999999999999999999999742 33 3456899999999
Q ss_pred EechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHH
Q 008913 447 AGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYV 500 (549)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l 500 (549)
|||.+++.+.||.++++|.++|+++.|++++|.+++..+|++.+..++.+.+.+
T Consensus 324 fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 324 FGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp ECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred echHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777776665554
No 49
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.60 E-value=1.8e-15 Score=155.60 Aligned_cols=137 Identities=12% Similarity=0.215 Sum_probs=111.3
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEec-C------CceeeeEEecC
Q 008913 371 FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-N------GAEQFLTKLGS 443 (549)
Q Consensus 371 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~-~------~~~~~~~~l~~ 443 (549)
+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++... + |++..+..+++
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~ 344 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR 344 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence 4556788899999999999999999999999999999999999999999999999998632 2 67778999999
Q ss_pred CCeEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 444 ADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 444 G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
|++|||.+++.+.+|.++++|.++|+++.|++++|.+++..+|++....++.+.+++..+....
T Consensus 345 G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~~~~~ 408 (416)
T 3tnp_B 345 GQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFGTN 408 (416)
T ss_dssp TCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC---------------
T ss_pred CCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999988888888877776655443
No 50
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.60 E-value=4.9e-15 Score=127.68 Aligned_cols=91 Identities=18% Similarity=0.297 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHH
Q 008913 200 RLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVF 279 (549)
Q Consensus 200 ~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~ 279 (549)
.++..++.++++.+..|++++.++... +.+....|.+|+||+++|+|||||||++|.|..++++
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~----------------~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~ 70 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERGA----------------PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 70 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSC----------------TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----------------CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHH
Confidence 344555556666677778777665311 1223346999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcch
Q 008913 280 NMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (549)
Q Consensus 280 ~i~~~l~g~~~~a~~i~~i~~~~~~~~ 306 (549)
+++.+++|+++++++++.+++.+.+..
T Consensus 71 ~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 71 AVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998775543
No 51
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.59 E-value=2.8e-15 Score=143.61 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=117.8
Q ss_pred HhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhh
Q 008913 375 VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVI 453 (549)
Q Consensus 375 l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l 453 (549)
+.+...+..++++.++.+...++.+.|++|++|+.+|++++.+|+|.+|.|+++. ..+|++.++..+++|++||+ ++
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence 3334445889999999999999999999999999999999999999999999987 46788889999999999999 77
Q ss_pred cCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 454 FNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 454 ~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
.+. +.++++|.++|+++.+++++|.++++++|++...+++.+.+++....+++
T Consensus 89 ~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~ 141 (250)
T 3e6c_C 89 PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQV 141 (250)
T ss_dssp CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 99999999999999999999999999999999999999988887766544
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.58 E-value=8.8e-16 Score=161.22 Aligned_cols=136 Identities=19% Similarity=0.223 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe-cCCc--
Q 008913 358 LPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGA-- 434 (549)
Q Consensus 358 Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~~~-- 434 (549)
.|+..|.+-......+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 4666677767777888999999999999999999999999999999999999999999999999999999974 3453
Q ss_pred eeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHH
Q 008913 435 EQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMN 494 (549)
Q Consensus 435 ~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~ 494 (549)
+..+..+++|++||+.+ +.+.++.++++|.++|+++.|++++|.++++++|++...+++
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 47899999999999999 999999999999999999999999999999999987655543
No 53
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.57 E-value=2.3e-14 Score=136.50 Aligned_cols=121 Identities=12% Similarity=0.191 Sum_probs=110.3
Q ss_pred HHHHHHHHhccc---ccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCC--ee
Q 008913 386 VDLIAQMVSEMK---AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIP--QP 459 (549)
Q Consensus 386 ~~~l~~l~~~~~---~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~--~~ 459 (549)
++.++.++.... .+.|++|++|+.+|+.++.+|+|.+|.|+++. ..+|++.++..+++|++||+.+++.+.+ +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 99999999999999999999999999999987 4678888999999999999999999886 45
Q ss_pred eEEEEcceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHh
Q 008913 460 FTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (549)
Q Consensus 460 ~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 506 (549)
++++|.++|+++.+++++|.++++++|++...+++.+.+++....++
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~ 156 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMM 156 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988887665543
No 54
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.56 E-value=3.4e-14 Score=134.92 Aligned_cols=125 Identities=11% Similarity=0.073 Sum_probs=110.0
Q ss_pred cCCCHHHHHHHHh--cccccccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCCe
Q 008913 382 QGVSVDLIAQMVS--EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQ 458 (549)
Q Consensus 382 ~~~~~~~l~~l~~--~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~~ 458 (549)
++++++.++.+.. .++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 3678888888885 58999999999999999999999999999999987 457888888888 9999999999998875
Q ss_pred --eeEEEEc-ceEEEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 459 --PFTVRTK-RLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 459 --~~~v~a~-~~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
..+++|. ++|+++.|++++|.++++++|++...+++.+.+++....+++
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 132 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKF 132 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888 599999999999999999999999999999988887765544
No 55
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.53 E-value=1.1e-14 Score=118.20 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHH
Q 008913 201 LSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFN 280 (549)
Q Consensus 201 l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~ 280 (549)
++..++.+++++.+.++++++++... +.+....|.+|+||+++|+|||||||++|.|..+++++
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~----------------~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~ 71 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGA----------------PGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVA 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS----------------TTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCC----------------CCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHH
Confidence 34455556666677788888887421 12223478999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchH
Q 008913 281 MLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (549)
Q Consensus 281 i~~~l~g~~~~a~~i~~i~~~~~~~~~ 307 (549)
++.+++|+.++++.++.+++.+.+..+
T Consensus 72 ~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 72 EQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp HHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988866443
No 56
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.52 E-value=4e-14 Score=148.56 Aligned_cols=125 Identities=13% Similarity=0.229 Sum_probs=107.9
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccc-cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKA-EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~-~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
....+.+.++++|.+++++.+..++..++. +.|++|++|+++||.++.+|+|.+|.|+++. ++. ..+..+++|++|
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~~~-~~~~~l~~G~~f 409 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI--YGK-GVVCTLHEGDDF 409 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE--TTT-EEEEEEETTCEE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE--cCC-eeEEEecCCCEE
Confidence 345677899999999999999999999985 4899999999999999999999999999987 333 378899999999
Q ss_pred echhhhcCCCeeeEEEEcc-eEEEEEeCHHHHHhhhccCcchHHHHHHHH
Q 008913 448 GEIGVIFNIPQPFTVRTKR-LSQVIRLSHHHLKQMVPIDHGDGKKIMNNF 496 (549)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~-~~~l~~i~~~~f~~l~~~~p~~~~~~~~~~ 496 (549)
|+.+++.+.|+.++++|.+ +|+++.|++++|.++++++|+....+.+..
T Consensus 410 Ge~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~~ 459 (469)
T 1o7f_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHD 459 (469)
T ss_dssp CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--------
T ss_pred EEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhcC
Confidence 9999999999999999998 799999999999999999999887765543
No 57
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.48 E-value=7e-14 Score=159.84 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=109.4
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEec---CCceeeeEEecCCC
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK---NGAEQFLTKLGSAD 445 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~---~~~~~~~~~l~~G~ 445 (549)
......|+++++|+++++..+.+||.+|+.+.|++|++|+++||.++.+|+|.+|.|.|+..+ ++.+..+..+++|+
T Consensus 38 ~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~ 117 (999)
T 4f7z_A 38 DIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGT 117 (999)
T ss_dssp HHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTC
T ss_pred HHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCc
Confidence 445577899999999999999999999999999999999999999999999999999998732 34466789999999
Q ss_pred eEechhhhcCCCeeeEEEEcceEEEEEeCHHHHHhhhccCcchH
Q 008913 446 MAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDG 489 (549)
Q Consensus 446 ~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~f~~l~~~~p~~~ 489 (549)
.||| +++.+.||.++++|.++|++++|++++|..++.++|+..
T Consensus 118 sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 118 AFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp EECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred chhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 9999 899999999999999999999999999999999887543
No 58
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.48 E-value=3e-13 Score=111.58 Aligned_cols=61 Identities=30% Similarity=0.483 Sum_probs=53.7
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT 309 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~ 309 (549)
.|.+|+||+++|+|||||||++|.|..+++++++.+++|+.++++.++.+++.+...+...
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999998886554433
No 59
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.45 E-value=2.6e-13 Score=147.48 Aligned_cols=135 Identities=15% Similarity=0.267 Sum_probs=115.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhccc-ccccCCCCEEEecCCCCCeEEEEEEeEEEEEEe
Q 008913 352 EEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMK-AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY 430 (549)
Q Consensus 352 ~~~l~~Lp~~Lr~ei~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~-~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~ 430 (549)
+.++.. |+..|.+.......+.+.++++|++++++.+..++..++ .+.|++|++|+++||.++.+|+|.+|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 344433 333344333444567899999999999999999999998 689999999999999999999999999999973
Q ss_pred cCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcc-eEEEEEeCHHHHHhhhccCcchHH
Q 008913 431 KNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKR-LSQVIRLSHHHLKQMVPIDHGDGK 490 (549)
Q Consensus 431 ~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~-~~~l~~i~~~~f~~l~~~~p~~~~ 490 (549)
|+ .++..+++|++||+.+++.+.++.++++|.+ +|+++.|++++|.++++++|+...
T Consensus 91 --g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 91 --GK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 148 (694)
T ss_dssp --TT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCE
T ss_pred --CC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 43 5889999999999999999999999999999 599999999999999999998743
No 60
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.45 E-value=4.5e-13 Score=122.93 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=93.2
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHH
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHH 477 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~ 477 (549)
+.|++|++|+++|++++.+|+|.+|.|+++. ..+|++..+..+++|++||+ +++.+.++.++++|.++|+++.+++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5689999999999999999999999999987 45788889999999999999 999999999999999999999999999
Q ss_pred HHhhhccCcchHHHHHHHHHHHHHhhhHhh
Q 008913 478 LKQMVPIDHGDGKKIMNNFIQYVKGLKQEM 507 (549)
Q Consensus 478 f~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 507 (549)
|. |++...+++.+.+++....+++
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~~~~~ 104 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRVQAYE 104 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 98 9999999999888887766543
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.40 E-value=1.1e-12 Score=101.23 Aligned_cols=54 Identities=30% Similarity=0.597 Sum_probs=51.7
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~ 302 (549)
.|.+|+||+++|+|||||||+.|.|..+|+++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999998765
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.39 E-value=1.8e-12 Score=103.54 Aligned_cols=81 Identities=28% Similarity=0.472 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHHHH
Q 008913 202 SKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNM 281 (549)
Q Consensus 202 ~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i 281 (549)
+...+.++++..+.+++.|.... . ..|.+|+||+++|+|||||||+.|.|..++++++
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~e-------~---------------~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~ 64 (97)
T 3ouf_A 7 FQVLFVLTILTLISGTIFYSTVE-------G---------------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-------C---------------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------C---------------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHH
Confidence 34445555555666676665441 0 2589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 008913 282 LYMLFNIGLTAYIIGNMTNLIVH 304 (549)
Q Consensus 282 ~~~l~g~~~~a~~i~~i~~~~~~ 304 (549)
+.+++|+.++++.++.++..++.
T Consensus 65 ~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 65 LYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999887754
No 63
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.36 E-value=2e-12 Score=119.31 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=92.7
Q ss_pred HHhcccccccCCCCEEEecCCCC--CeEEEEEEeEEEEEE-ecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceE
Q 008913 392 MVSEMKAEYFPPKVEIILQNEIP--TDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLS 468 (549)
Q Consensus 392 l~~~~~~~~~~~~e~I~~~g~~~--~~ly~I~~G~v~v~~-~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~ 468 (549)
+...++.+.|++|++|+++|+++ +.+|+|.+|.|+++. ..+|++.++..+++|++||+ +++.+.++.++++|.++|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 34567889999999999999999 999999999999987 45788889999999999999 888999999999999999
Q ss_pred EEEEeCHHHHHhhhccCcchHHHHHHHHHHHHHhhhHh
Q 008913 469 QVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (549)
Q Consensus 469 ~l~~i~~~~f~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 506 (549)
+++.+ +++|. |++...+++.+.+++....++
T Consensus 80 ~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~~ 110 (202)
T 2zcw_A 80 RLEPL-PENPD------PELLKDLAQHLSQGLAEAYRR 110 (202)
T ss_dssp EEEEC-CSSCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE-hHhcC------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999 98886 888888888888877666554
No 64
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.34 E-value=3.6e-12 Score=145.75 Aligned_cols=113 Identities=16% Similarity=0.274 Sum_probs=100.8
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHhccccc-ccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAE-YFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 369 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~-~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
....+.+.++|.|++++...+++|+..+... .+.+|++|++|||.++.+|||++|.|+|+.. +. ..+..+++||+|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~--~~-~~v~~L~~Gd~F 409 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY--GK-GVVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEET--TT-EEEEEEETTCEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEc--CC-cceEEecCCCcc
Confidence 3446778899999999999999999999865 4578999999999999999999999999863 22 357899999999
Q ss_pred echhhhcCCCeeeEEEEcc-eEEEEEeCHHHHHhhhcc
Q 008913 448 GEIGVIFNIPQPFTVRTKR-LSQVIRLSHHHLKQMVPI 484 (549)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~-~~~l~~i~~~~f~~l~~~ 484 (549)
||.+++.+.||.++++|.+ +|+++++++++|.+++.+
T Consensus 410 GElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp CGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred cchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 9999999999999999998 599999999999999864
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.33 E-value=3.3e-15 Score=132.53 Aligned_cols=63 Identities=25% Similarity=0.461 Sum_probs=57.4
Q ss_pred hhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Q 008913 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT 309 (549)
Q Consensus 247 ~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~ 309 (549)
...|.+|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+...+.
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999998887655443
No 66
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.22 E-value=6.4e-11 Score=111.35 Aligned_cols=205 Identities=14% Similarity=0.197 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccc--cccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccch
Q 008913 62 WWQTFLVVLVVYSAWASPFELAFRKA--ATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (549)
Q Consensus 62 ~W~~~~~~~~~~~~~~ip~~~~f~~~--~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~ 139 (549)
.++.++.++++.+++.+..+. .+.. ....+..+|.++.++|.+|+++++... | -.++|++++|
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------~--------~~~~y~~~~w 77 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGE------K--------QKADFFKSGW 77 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHH
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------C--------chhHHhcCCc
Confidence 578888889998888766554 2111 133467899999999999999998764 1 1268999999
Q ss_pred hhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIR-FTYFITRLSKLICVTLFAVHSAGCF 218 (549)
Q Consensus 140 f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~~l~~~~~-~~~~~~~l~~l~~~~l~~~h~~acl 218 (549)
.++|+++++|...-.. .+.....+|++|++|++|+.+..+.++.... .....-.+..+.+.++++...+|++
T Consensus 78 ni~D~~~v~~~~i~~~-------~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~ 150 (229)
T 4dxw_A 78 NIFDTVIVAISLIPIP-------NNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATM 150 (229)
T ss_dssp HHHHHHHHHHTTCC---------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877766532110 0122233455555555555444443332211 1112233444444444444445554
Q ss_pred HHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccc----cCCchhHHH-HHHHHHHHHHHHHH
Q 008913 219 YFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLH----AVNTGEKVF-NMLYMLFNIGLTAY 293 (549)
Q Consensus 219 ~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~----p~t~~e~~~-~i~~~l~g~~~~a~ 293 (549)
-+.+... .+++.++++..|++|.+.++|+.||+|+. ..+....++ ..+..+.+.++...
T Consensus 151 g~~lf~~----------------~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNl 214 (229)
T 4dxw_A 151 GAILFGN----------------DDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNL 214 (229)
T ss_dssp HHHHTTT----------------TSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc----------------CCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 3333211 11234577999999999999999999862 223333333 44444455677777
Q ss_pred HHHHHHHHHHc
Q 008913 294 IIGNMTNLIVH 304 (549)
Q Consensus 294 ~i~~i~~~~~~ 304 (549)
.++.+.+-+.+
T Consensus 215 fiavi~~~f~~ 225 (229)
T 4dxw_A 215 VIAILVDVVIQ 225 (229)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777655544
No 67
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.17 E-value=5.1e-11 Score=115.33 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=53.8
Q ss_pred hhhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008913 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (549)
Q Consensus 247 ~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~ 304 (549)
...|.+|+||+++|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+..
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999999999999998877644
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.09 E-value=1.2e-10 Score=113.85 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.1
Q ss_pred hhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 008913 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (549)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~ 306 (549)
..|.+|+||+++|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+....
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999998886544
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.05 E-value=6e-10 Score=108.62 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=54.5
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~~ 306 (549)
.|.+|+||+++|+|||||||+.|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999988876543
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.02 E-value=1.3e-09 Score=104.87 Aligned_cols=56 Identities=20% Similarity=0.437 Sum_probs=53.7
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~ 304 (549)
+|.+|+||+++|+|||||||++|.|..+++++++.+++|+.+++++++.+++.+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999988754
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.92 E-value=2.1e-09 Score=103.41 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=53.8
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEK------VFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~------~~~i~~~l~g~~~~a~~i~~i~~~~~~~~~ 307 (549)
.|.+|+||+++|+|||||||++|.+..++ +++++++++|+++++++++.+++.+....+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999887 599999999999999999999988765543
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.87 E-value=8.7e-09 Score=100.39 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC----CCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccC--CchhHHHH
Q 008913 207 VTLFAVHSAGCFYFYLAAHHKIP----ENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAV--NTGEKVFN 280 (549)
Q Consensus 207 ~~l~~~h~~acl~~~i~~~~~~~----~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~--t~~e~~~~ 280 (549)
.+++..-++|++||.++...++. +..|..- ......+..|+||+++|+|||||||+.|. ++.+++++
T Consensus 52 ~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~C-------v~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~ 124 (340)
T 3sya_A 52 VYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPC-------VTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILL 124 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCS-------BSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccch-------hccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHH
Confidence 34444556899999887432221 1122111 11235688999999999999999999997 68899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Q 008913 281 MLYMLFNIGLTAYIIGNMTNLIVHSA 306 (549)
Q Consensus 281 i~~~l~g~~~~a~~i~~i~~~~~~~~ 306 (549)
.+.+++|+++.|.++|.+.+-+....
T Consensus 125 ~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 125 LIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999987776544
No 73
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.82 E-value=8.6e-09 Score=110.31 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCCcccCchhhhHHHHHHhhhhhhhcccccccccCCchhHHH
Q 008913 200 RLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVF 279 (549)
Q Consensus 200 ~l~~l~~~~l~~~h~~acl~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~ 279 (549)
++...++.+++++++.+|+|+++....+.. . ..|.+|+||+++|+|||||||++|.|..++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~---------------~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~ 81 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEGR--A---------------YSFMAGIYWTITVMTTLGFGDITFESDAGYLF 81 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---------------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C---------------CchhhhhheeeeeeeeecCCCcCCCCccHHHH
Confidence 455556666666777777777655311111 1 15889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Q 008913 280 NMLYMLFNIGLTAYIIGN-MTNLI 302 (549)
Q Consensus 280 ~i~~~l~g~~~~a~~i~~-i~~~~ 302 (549)
+++++++|++++++.++. +.+.+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 82 ASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 44443
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.82 E-value=1.6e-08 Score=95.86 Aligned_cols=54 Identities=24% Similarity=0.545 Sum_probs=51.4
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~ 302 (549)
.|.+|+||+++|+|||||||++|.|..+++++++.+++|+.++++.++.++..+
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999987554
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=96.61 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=51.3
Q ss_pred hHHHHHHhhhhhhhcccccccccCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTG-------EKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~-------e~~~~i~~~l~g~~~~a~~i~~i~~~~~~ 304 (549)
.|.+|+||+++|+|||||||++|.+.. .++++++.+++|+++++++++.++++...
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999985 59999999999999999999999876543
No 76
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.76 E-value=2.1e-08 Score=97.89 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC-----CCCcccccccCCcccCchhhhHHHHHHhhhhhhhccccccccc--CCchhHH
Q 008913 206 CVTLFAVHSAGCFYFYLAAHHKI-----PENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHA--VNTGEKV 278 (549)
Q Consensus 206 ~~~l~~~h~~acl~~~i~~~~~~-----~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p--~t~~e~~ 278 (549)
..+++..-++|.+|++++...++ ..++|..- ......+..|+||+++|+|||||||+.| .++.+++
T Consensus 53 ~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~C-------v~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~ 125 (343)
T 3spc_A 53 LAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPC-------VLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVF 125 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCS-------EETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccccccc-------ccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHH
Confidence 34444556678888887653221 12223111 1123578999999999999999999986 4899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 008913 279 FNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (549)
Q Consensus 279 ~~i~~~l~g~~~~a~~i~~i~~~~~~~~ 306 (549)
++.+.+++|+++.|.++|.+.+-+....
T Consensus 126 l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 126 MVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999987766543
No 77
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.73 E-value=1.6e-08 Score=86.89 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhccccc--ccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccch
Q 008913 62 WWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (549)
Q Consensus 62 ~W~~~~~~~~~~~~~~ip~~~~f~~~~--~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~~ 139 (549)
.|+.++.++++.+++.+.++....... ...+..+|.++.++|++|+++++..+ .+ +++|+++
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a----------~~----k~~f~~~-- 85 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS----------GD----PAGYVKK-- 85 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------TC----HHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHC----------Cc----HHHHHHH--
Confidence 478888888888888887776553322 33467899999999999999999876 12 2689987
Q ss_pred hhhhhhccchHHHHHHHhcCCCCCcchhhHHHHHHHHhHHHHHHHHH
Q 008913 140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFT 186 (549)
Q Consensus 140 f~~Dlis~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~ri~~~~~ 186 (549)
.++|+++++|+...... . ..++++|++|++|++|+.++.+
T Consensus 86 ~iiDllailP~~~~~~~-~------~~lr~lRvlRllRv~Rllrl~r 125 (147)
T 2kyh_A 86 TLYEIPALVPAGLLALI-E------GHLAGLGLFRLVRLLRFLRILL 125 (147)
T ss_dssp STTTHHHHCCHHHHHHH-H------HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-H------hHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999865432 1 2234444444444444444444
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.70 E-value=2.8e-08 Score=84.16 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhcccc--cccchhhHHHHHHHHHHhhhheeeeEeEEeCCCcEEEechhHHHHHhhccc
Q 008913 61 RWWQTFLVVLVVYSAWASPFELAFRKA--ATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRL 138 (549)
Q Consensus 61 ~~W~~~~~~~~~~~~~~ip~~~~f~~~--~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~~~g~~i~~~~~i~~~Yl~~~ 138 (549)
..++.+++++++.+++.+..+...... ....+..+|.++.++|.+|+++++..+ .++ ++|++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~----------~~~----~~y~~-- 69 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS----------GDP----AGYVK-- 69 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TST----TTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCH----HHHHH--
Confidence 357888988888888887776543222 234467899999999999999999875 122 67998
Q ss_pred hhhhhhhccchHHHHHH
Q 008913 139 WFTMDVASTLPFQFIYR 155 (549)
Q Consensus 139 ~f~~Dlis~iP~~~~~~ 155 (549)
|.++|+++++|+.....
T Consensus 70 ~niiDllailp~~~~~~ 86 (132)
T 1ors_C 70 KTLYEIPALVPAGLLAL 86 (132)
T ss_dssp TCGGGTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999986543
No 79
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.47 E-value=1.2e-08 Score=101.78 Aligned_cols=57 Identities=28% Similarity=0.610 Sum_probs=51.3
Q ss_pred hHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 008913 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHS 305 (549)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~~ 305 (549)
.|.+|+||+++|+|||||||++|.|..+++++++++++|++++++.++.+++.+.+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999998777553
No 80
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=86.04 E-value=1 Score=49.83 Aligned_cols=56 Identities=13% Similarity=0.340 Sum_probs=45.9
Q ss_pred hhHHHHHHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008913 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (549)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~~~~i~~~l~g~~~~a~~i~~i~~~~~~ 304 (549)
.....++|+++.+++..| ++..|.+...|++.++++++++++.+...+++++.+..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346789999999999888 78899999999999999999999999999999998864
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=71.36 E-value=18 Score=28.40 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=43.7
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
....+.||..+-..-.....++++++|.+++.. +++ ...+++||.+=-. .+.++ ++++.+++.++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~H--~~~~~~~~~~~~ 104 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA---QRRLHQGDLLYLG---AGAAH--DVNAITNTSLLV 104 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE---EEEECTTEEEEEC---TTCCE--EEEESSSEEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE---EEEECCCCEEEEC---CCCcE--EEEeCCCcEEEE
Confidence 345678888876655556789999999999876 443 3578999964322 23333 455666665443
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=68.57 E-value=15 Score=28.75 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=38.2
Q ss_pred cCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 401 ~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
+.||..+-........++++++|.+.+.. +++ ...+++||.+=-. .+.++. +++.+++.++.+
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~---~~~l~~Gd~i~i~---~~~~H~--~~~~~~~~~~~i 107 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITF--DDQ---KIDLVPEDVLMVP---AHKIHA--IAGKGRFKMLQI 107 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE---EEEECTTCEEEEC---TTCCBE--EEEEEEEEEEEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEE--CCE---EEEecCCCEEEEC---CCCcEE--EEeCCCcEEEEE
Confidence 45565543334456689999999999876 443 3578999964322 244443 334456665543
No 83
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=68.34 E-value=20 Score=32.38 Aligned_cols=68 Identities=12% Similarity=0.265 Sum_probs=49.9
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
+....+.||+.+-..-.+.+.+.+|++|.+++.. +|+. ..+++||++=-. .+ .+..++|.++|.++.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i--~~~~---~~l~~Gd~~~~p---~~--~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI--ENNK---KTISNGDFLEIT---AN--HNYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE--SSCE---EEEETTEEEEEC---SS--CCEEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE--CCEE---EEECCCCEEEEC---CC--CCEEEEECCCcEEEEE
Confidence 3456688999987777788899999999999986 4543 468899863222 23 3456678889998876
No 84
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=65.66 E-value=20 Score=27.90 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=42.3
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
....+.||...-..-....+++++++|.+.+.. +|+ ...+.+||.+=.. .+.++ .+++.+++.++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~l~v 103 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV---IKVLTAGDSFFVP---PHVDH--GAVCPTGGILIDT 103 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTCEEEEC---TTCCE--EEEESSCEEEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE---EEEeCCCCEEEEC---cCCce--eeEeCCCcEEEEE
Confidence 345567887654333346689999999999876 443 3578999974322 23333 3455557776655
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=65.14 E-value=46 Score=26.38 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=41.3
Q ss_pred ccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
...+.||..+-..- ..+++++|++|.+.+.. +|+ ...+++||.+--. .+.+....... +.+.++.+
T Consensus 44 ~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~---~~~l~~GD~v~ip---~g~~H~~~~~~-~~~~~l~v 109 (119)
T 3lwc_A 44 YGRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGE---TVTAGPGEIVYMP---KGETVTIRSHE-EGALTAYV 109 (119)
T ss_dssp EEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTE---EEEECTTCEEEEC---TTCEEEEEEEE-EEEEEEEE
T ss_pred EEEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCEEEEEcCC-CCeEEEEE
Confidence 34567887665443 67789999999999976 453 3478999975433 24444433322 45555443
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=59.64 E-value=42 Score=25.87 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=42.2
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
....+.||..+-..-.....++++++|.+.+.. +|+ ...+.+|+.+=.. .+.+. .+++.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE---TYRVAEGQTIVMP---AGIPH--ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTSCE--EEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCCE--EEEECCCceEEEE
Confidence 345567887765444446689999999999876 443 2478899975322 23333 3455556666544
No 87
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=59.01 E-value=21 Score=31.90 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=8.7
Q ss_pred hhHHHHHHHHhHHHHHH
Q 008913 167 FGFLNLLRLWRLRRVGE 183 (549)
Q Consensus 167 ~~~l~llrllRl~ri~~ 183 (549)
++.+|++|++|+.|+.+
T Consensus 99 lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 99 FRLVRLLRFLRILLIIS 115 (223)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 88
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=53.83 E-value=30 Score=29.45 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=30.1
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
..+.||..+-..-....++++|++|.+++.. +|+ ...+++||.+=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~---~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA---VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE---EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 3456666553333345678999999999876 443 35789999653
No 89
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=53.46 E-value=51 Score=24.54 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=40.1
Q ss_pred ccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 398 AEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
...+.||..+-..-.. ..+++++++|.+.+.. +++ ...+++||.+=-. .+.+........+.+.++.+
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H~~~~~~~~~~~~~~v 100 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE---EALLAPGMAAFAP---AGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE---EEEECTTCEEEEC---TTSCEEEECCSSSCEEEEEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 4556788776443333 3579999999999876 443 3578999975322 24444333222345555543
No 90
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=51.42 E-value=49 Score=25.19 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=32.2
Q ss_pred ccccCCCCEEEec--CCC-CCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 398 AEYFPPKVEIILQ--NEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 398 ~~~~~~~e~I~~~--g~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
...+.||..+-.. -.. ...++++++|.+.+.. +++ ...+++||.+=
T Consensus 25 ~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ 73 (113)
T 2gu9_A 25 EMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH---TQALQAGSLIA 73 (113)
T ss_dssp EEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE---EEEECTTEEEE
T ss_pred EEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 3456788776544 333 5689999999999876 443 35789999653
No 91
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=48.85 E-value=62 Score=25.34 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=27.5
Q ss_pred hhhHHHHHHhhhhhhhcccccccc-----cCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 008913 247 WLGYTYSIYWSIVTLTTVGYGDLH-----AVNTGEKVFNMLYMLFN-IGLTAYIIGNMTNLIV 303 (549)
Q Consensus 247 ~~~Y~~sly~a~~t~ttvGygdi~-----p~t~~e~~~~i~~~l~g-~~~~a~~i~~i~~~~~ 303 (549)
+.....|+.-.++.+|+-|+.|.. ..++...++-+.++++| .++....++.+.+-+.
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~ 98 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMA 98 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666777776432 22333445545444444 4445555555544443
No 92
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=47.54 E-value=21 Score=30.64 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=38.9
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
..++||...-.......+..+|++|.+++.. ++|+ ...+++||.+ .. .+.++.+.-...+.|+++.+
T Consensus 84 v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l-d~ge---~~~L~~GDsi-~~---~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 84 VDMLPGKESPMHRTNSIDYGIVLEGEIELEL-DDGA---KRTVRQGGII-VQ---RGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEECTTCBCCCBCCSEEEEEEEEESCEEEEC-GGGC---EEEECTTCEE-EE---CSCCBEEECCSSSCEEEEEE
T ss_pred EEECCCCCCCCeecCceEEEEEEeCEEEEEE-CCCe---EEEECCCCEE-Ee---CCCcEEEEeCCCCCEEEEEE
Confidence 4455655432222334467899999999875 2243 3478999987 33 35555444444455555543
No 93
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=47.44 E-value=30 Score=29.58 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=35.4
Q ss_pred CCCeEEEEEEeEEEEEEecCC---ceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCH
Q 008913 413 IPTDLYIVVSGAVDVLIYKNG---AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSH 475 (549)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~~---~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~ 475 (549)
+.++++++++|.+.+-..++| .+..-..+++|+.|=... +.+. +-++..++..+.+.+
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~---gvpH--sP~r~~e~v~lviEr 113 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPG---NVPH--SPVRFADTVGIVVEQ 113 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECT---TCCE--EEEECTTCEEEEEEE
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCC---CCCc--CCcccCCcEEEEEEe
Confidence 345899999999988775545 122345789999875442 3332 222234555555544
No 94
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=46.96 E-value=72 Score=26.93 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=41.4
Q ss_pred ccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEE-cceEEEEEe
Q 008913 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT-KRLSQVIRL 473 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a-~~~~~l~~i 473 (549)
...+.||..+-..-....++++|++|.+.+.. +|+ ...+++||.+=-. .+.+....... .+.+.++.+
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR---VEPLTPLDCVYIA---PHAWHQIHATGANEPLGFLCI 128 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE---EEEECTTCEEEEC---TTCCEEEEEESSSCCEEEEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCcEEEEeCCCCCCEEEEEE
Confidence 34556776554333446789999999999876 443 3578999965322 34555444333 445555544
No 95
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=45.00 E-value=61 Score=29.01 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=45.4
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEE-cceEEEEE
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT-KRLSQVIR 472 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a-~~~~~l~~ 472 (549)
+....+.||+.+-..-...+.++++++|.+++.. +|+ ...+++||.+=-. .+.++ .+++ .+++.++.
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~---~~~l~~Gd~i~ip---~~~~H--~~~~~~~~~~~ll 222 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK---PFIVKKGESAVLP---ANIPH--AVEAETENFKMLL 222 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE---EEEEETTEEEEEC---TTSCE--EEECCSSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE---EEEECCCCEEEEC---CCCcE--EEEeCCCCEEEEE
Confidence 4456788998886555556789999999999876 443 3578999964322 23333 4556 77776654
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=44.84 E-value=30 Score=29.82 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=35.8
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
+....+.||...-.....++++++|++|.+++.....+.. ....+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEE
Confidence 4456678887765554445789999999998876322222 356899999765
No 97
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=44.26 E-value=63 Score=25.36 Aligned_cols=69 Identities=19% Similarity=0.083 Sum_probs=39.7
Q ss_pred cccccCCCCEEEecCCCC-CeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 397 KAEYFPPKVEIILQNEIP-TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
....+.||..+-..-... ..+++|++|.+.+.. .+|+ ...+++||.+=.. .+.++.......+++.++.
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~---~~~l~~Gd~~~i~---~~~~H~~~n~~~~~~~~l~ 111 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGI---VTHLKAGDIAIAK---PGQVHGAMNSGPEPFIFVS 111 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTC---EEEEETTEEEEEC---TTCCCEEEECSSSCEEEEE
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCe---EEEeCCCCEEEEC---CCCEEEeEeCCCCCEEEEE
Confidence 345567887765443443 678999999998864 2343 3468899964322 3444443333334445443
No 98
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=43.79 E-value=41 Score=26.50 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=45.7
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcce-EEEEE--
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRL-SQVIR-- 472 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~-~~l~~-- 472 (549)
+....+.||..+-..-.....+++|++|.+.+.. +|+ ...+++|+.+=.. .+.++. +++.++ |.++.
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H~--~~~~~~~~~~l~v~ 112 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE---TRVLRPGMAYTIP---GGVRHR--ARTFEDGCLVLDIF 112 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTEEEEEC---TTCCEE--EECCTTCEEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE---EEEeCCCCEEEEC---CCCcEE--eEECCCCEEEEEEE
Confidence 3345677888775544445789999999999876 443 3578999865322 233333 333344 55442
Q ss_pred -eCHHHHHhhh
Q 008913 473 -LSHHHLKQMV 482 (549)
Q Consensus 473 -i~~~~f~~l~ 482 (549)
-++++|.+.+
T Consensus 113 ~p~~~d~~~~~ 123 (126)
T 4e2g_A 113 SPPREDYARMA 123 (126)
T ss_dssp ESCCHHHHHHH
T ss_pred CCCCcchhhhh
Confidence 2445555443
No 99
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=43.73 E-value=38 Score=28.99 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEech
Q 008913 413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~ 450 (549)
+.++++++++|.+.+-..++|+. .-..+++|+.|=..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~-~~v~l~eGE~f~lP 90 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRR-ERADLKEGDIFLLP 90 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEE-EEEEECTTCEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCce-eeEEECCCCEEEeC
Confidence 45689999999998877544532 34579999987654
No 100
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=42.07 E-value=47 Score=28.81 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=38.5
Q ss_pred ccCCCCEEE---ecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEE-EcceEEEEEe
Q 008913 400 YFPPKVEII---LQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVR-TKRLSQVIRL 473 (549)
Q Consensus 400 ~~~~~e~I~---~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~-a~~~~~l~~i 473 (549)
.+.||...- .......++++|++|.+.+...++| ......+++||.+=-. .+.++.+... ..++|.++.+
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~-~~~~~~l~~GD~~~~~---~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKE-NPKEALLPTGASMFVE---EHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTT-SCEEEEECTTCEEEEC---TTCCEEEEESTTSCCEEEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcC-CcccEEECCCCEEEeC---CCCceEEEecCCCCCeEEEEE
Confidence 445655432 1223346899999999998872211 1124579999975322 2444433322 2255666544
No 101
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=41.48 E-value=1.2e+02 Score=23.17 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=31.3
Q ss_pred ccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
...+.||+.-.. ....++++|++|.+.+.. ++|. ...+++||.+=
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i-~~g~---~~~l~~GD~i~ 79 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTT-EDGK---KYVIEKGDLVT 79 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEE-TTCC---EEEEETTCEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEE-CCCC---EEEECCCCEEE
Confidence 455677765543 346789999999999876 2243 35789999654
No 102
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=40.99 E-value=27 Score=31.39 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=8.8
Q ss_pred ccchhhHHHHHHHHHHh
Q 008913 89 TGSLLIVDLVVDFFFAA 105 (549)
Q Consensus 89 ~~~~~~~~~~~~~if~~ 105 (549)
...|..+|.+.-+..++
T Consensus 74 ~~~wni~D~~~v~~~~i 90 (229)
T 4dxw_A 74 KSGWNIFDTVIVAISLI 90 (229)
T ss_dssp -CHHHHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHHHHHh
Confidence 34456666665554443
No 103
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=40.54 E-value=35 Score=27.10 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=30.4
Q ss_pred cCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEech
Q 008913 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 401 ~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~ 450 (549)
+.||..-+.. +..++++.|++|.+.+.. ++|. ...+++||.+--.
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~-ddG~---~~~l~aGD~~~~P 93 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQ-ADAD---PVKIGPGSIVSIA 93 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEE-TTCC---CEEECTTEEEEEC
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEe-CCCe---EEEECCCCEEEEC
Confidence 4566554443 333589999999999975 4454 3578999976544
No 104
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=40.43 E-value=1.2e+02 Score=26.40 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=34.8
Q ss_pred ccccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEecCC---ceeeeEEecCCCeEe
Q 008913 396 MKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNG---AEQFLTKLGSADMAG 448 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~~---~~~~~~~l~~G~~fG 448 (549)
+....+.||...-..-.. .+++++|++|.+++.....+ .+.....+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 344567888766433333 57999999999998653221 232356799999764
No 105
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=39.05 E-value=99 Score=25.31 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=40.8
Q ss_pred ccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
...+.||..+-..-.....+++|++|.+.+.. +++. ...+.+|+.+=-. .+.+........+.+.++.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~--~~~~--~~~l~~Gd~i~ip---~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE--RGKP--ARILKKGDVVEIP---PNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE--TTSC--CEEEETTCEEEEC---TTCCEEEEEBTTBCEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE--CCEE--EEEECCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 34566776653333334689999999999876 4432 1468899975422 34555444433445555544
No 106
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=38.95 E-value=82 Score=28.55 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=44.2
Q ss_pred cccccccCCCCEEEe-cCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 395 EMKAEYFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 395 ~~~~~~~~~~e~I~~-~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
.+....++||..+-. +-....+.++|++|++.+.. +|+ ...+++||++--. .+.++.+.....++|+.+.
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~---~~~l~~GD~~~~~---~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN---YYPVTAGDIIWMG---AHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEEESSSCEEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE---EEEcCCCCEEEEC---CCCCEEEEcCCCCCEEEEE
Confidence 345667889887753 33445689999999998875 554 3478999974422 2444444444444555443
No 107
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=38.41 E-value=36 Score=25.55 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=38.4
Q ss_pred ccccCCCCEEEecCCCCC-eEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 398 AEYFPPKVEIILQNEIPT-DLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~~-~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
...+.||...-..-.... .+++|++|.+++.. ++|. ....+.+||.+=.. .+.+....-...+.++++.+
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~g~--~~~~l~~Gd~~~~p---~~~~H~~~N~g~~~~~~l~v 92 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET-PEGS--VTSQLTRGVSYTRP---EGVEHNVINPSDTEFVFVEI 92 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE-TTEE--EEEEECTTCCEEEC---TTCEEEEECCSSSCEEEEEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe-CCCC--EEEEEcCCCEEEeC---CCCcccCEeCCCCcEEEEEE
Confidence 355677766522222333 59999999999876 2221 23578999976433 23333332222334555444
No 108
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=38.19 E-value=55 Score=27.39 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=29.2
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
..+.||...-..-....++++|++|.+++.. +|+ ...+++||.+
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE---EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEE
Confidence 3445665543333345678999999999876 443 3568899965
No 109
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=37.18 E-value=86 Score=25.09 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=30.7
Q ss_pred ccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 398 AEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
...+.||..+-..-.. ..++++|++|.+.+.. +++ ...+.+||.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK---DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE---EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE---EEEeCCCcEE
Confidence 3456788766432233 3679999999999876 443 3568899965
No 110
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=35.96 E-value=74 Score=25.16 Aligned_cols=67 Identities=15% Similarity=-0.040 Sum_probs=38.2
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
..+.||...-..-.....+++|++|.+.+.. +++ ...+.+|+.+=.. .+.+........+.+.++.+
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~g~~H~~~~~~~~~~~~l~v 119 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQG---EETVEEGFYIFVE---PNEIHGFRNDTDSEVEFLCL 119 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSC---EEEEETTEEEEEC---TTCCEEEECCSSSCEEEEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCE---EEEECCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 4456666553333346789999999998875 443 2468888865322 24444333223334555443
No 111
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=35.89 E-value=1.2e+02 Score=29.44 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=45.0
Q ss_pred ccccccCCCCEEEecCCCC-CeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 396 MKAEYFPPKVEIILQNEIP-TDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
+....+.||...-..-... .++++|++|.+++... .+|+. ....+++||.+=-. .+.++.......+.++++.+
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~-~~~~l~~GD~~~ip---~~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA-RTFNYQAGDVGYVP---FAMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE-EEEEEESSCEEEEC---TTCBEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE-EEEEEcCCCEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 3445678888775443344 7899999999988763 34432 34578999976433 24444333333355666655
No 112
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=35.66 E-value=64 Score=27.11 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=30.4
Q ss_pred ccccCCCCEEE--ecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 398 AEYFPPKVEII--LQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 398 ~~~~~~~e~I~--~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
...+.||.... +..+..+++++|++|.+++.. +++ ...+++|+.+-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~--~~~---~~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD--DQG---EHPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE--TTE---EEEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE--CCE---EEEeCCCCEEE
Confidence 35566776442 222333689999999999876 443 35789999654
No 113
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=35.52 E-value=1e+02 Score=24.10 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=42.8
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEE--EEeCHH
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQV--IRLSHH 476 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l--~~i~~~ 476 (549)
..+.||...-..-....+++++++|.+.+.. +|+ ...+++|+.+=-. .+.+........++++. +.++.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~---~~~l~~Gd~~~i~---~~~~H~~~~~~~~~~~~~~i~f~~~ 110 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE---DFPVTKGDLIIIP---LDSEHHVINNNQEDFHFYTIWWDKE 110 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEECSSSCEEEEEEEECHH
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE---EEEECCCcEEEEC---CCCcEEeEeCCCCCEEEEEEEECHH
Confidence 3445655332222345679999999999876 443 3578899864322 24444433322344443 455665
Q ss_pred HHHhhhc
Q 008913 477 HLKQMVP 483 (549)
Q Consensus 477 ~f~~l~~ 483 (549)
-+..++.
T Consensus 111 ~~~~~~~ 117 (128)
T 4i4a_A 111 STLNFLT 117 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 114
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=34.22 E-value=53 Score=30.43 Aligned_cols=60 Identities=5% Similarity=0.009 Sum_probs=38.9
Q ss_pred CCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHH
Q 008913 411 NEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (549)
Q Consensus 411 g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~ 476 (549)
-+..++++++++|...+-..++|+- .-..+++|+.|=...-.. .+=++..+|..++|.+.
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~-~~V~i~eGemfllP~gv~-----HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKH-RDVVIRQGEIFLLPARVP-----HSPQRFANTVGLVVERR 107 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEE-EEEEECTTEEEEECTTCC-----EEEEECTTCEEEEEEEC
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCce-eeEEECCCeEEEeCCCCC-----cCCcccCCeEEEEEeec
Confidence 3456789999999998877555643 335789999876543222 22334556777777643
No 115
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=33.33 E-value=26 Score=28.47 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=5.9
Q ss_pred HHHHHHHhHHHHHHH
Q 008913 170 LNLLRLWRLRRVGEL 184 (549)
Q Consensus 170 l~llrllRl~ri~~~ 184 (549)
+|++|++|++|+.+.
T Consensus 97 lRllRv~Rvlkl~r~ 111 (132)
T 1ors_C 97 FRLVRLLRFLRILLI 111 (132)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 116
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=33.13 E-value=37 Score=27.21 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=29.3
Q ss_pred cCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEech
Q 008913 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 401 ~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~ 450 (549)
..||..-.+..+ .+++++|++|.+.+.. ++|. ...+++||.+--.
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~-~~g~---~~~l~~GD~~~ip 100 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVD-PDGT---VHAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEEC-TTCC---EEEEETTCEEEEC
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEE-CCCe---EEEECCCCEEEEC
Confidence 455555443322 2789999999999875 3443 2468999976533
No 117
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=33.05 E-value=1.5e+02 Score=24.64 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
..+++++|++|.+++.. +|+ ...+++||.+=-. .+.+..+.. .+.|+++.+
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~---~~~l~~GD~i~iP---~G~~h~~~n--~~~a~~l~V 133 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR---KVSASSGELIFIP---KGSKIQFSV--PDYARFIYV 133 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE---EEEEETTCEEEEC---TTCEEEEEE--EEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE---EEEEcCCCEEEEC---CCCEEEEEe--CCCEEEEEE
Confidence 35678999999999985 554 3578999965322 244433333 256665554
No 118
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=32.37 E-value=62 Score=26.57 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=40.4
Q ss_pred ecCCCCCeEEEEEEeEEEEEEecC---CceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHH
Q 008913 409 LQNEIPTDLYIVVSGAVDVLIYKN---GAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (549)
Q Consensus 409 ~~g~~~~~ly~I~~G~v~v~~~~~---~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~ 476 (549)
+..+..|++++|++|.+.+...+. +.+.....+++|+++--. .|. ...-.|.+.|.++.+...
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP---kGv--eH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP---AEC--WFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC---TTC--EEEEEECTTCEEEEEEES
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC---CCc--cCcccCCCceEEEEEEeC
Confidence 455667899999999998876321 111234578999875433 122 233456788888888655
No 119
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=31.68 E-value=1.1e+02 Score=26.05 Aligned_cols=52 Identities=10% Similarity=-0.081 Sum_probs=32.8
Q ss_pred CCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
.+..+++|++|.+++.. +|+ ...+++||+|=-. .+.++...-...+.|+++.
T Consensus 109 ~gEE~~yVLeG~v~vtl--~g~---~~~L~~Gds~~iP---~g~~H~~~N~~d~~Arll~ 160 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTV--CKN---KFLSVKGSTFQIP---AFNEYAIANRGNDEAKMFF 160 (166)
T ss_dssp SEEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTCEEEEEECSSSCEEEEE
T ss_pred CceEEEEEEEeEEEEEE--CCE---EEEEcCCCEEEEC---CCCCEEEEECCCCCEEEEE
Confidence 34579999999999987 443 3478999976433 2444444434444555544
No 120
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=31.26 E-value=1.4e+02 Score=24.12 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=37.5
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
..+.||..-.. ...+++++|++|.+.+.. +|+. ..+++||.+--. .+.+.... ..+.++++.+
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~--~g~~---~~l~~GD~i~~p---~g~~h~~~--~~~~~~~l~v 124 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH--EGET---MIAKAGDVMFIP---KGSSIEFG--TPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE--TTEE---EEEETTCEEEEC---TTCEEEEE--EEEEEEEEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE--CCEE---EEECCCcEEEEC---CCCEEEEE--eCCCEEEEEE
Confidence 44667732222 236789999999999876 4542 378999976533 23333333 3445555443
No 121
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=31.19 E-value=35 Score=26.10 Aligned_cols=66 Identities=8% Similarity=-0.022 Sum_probs=38.4
Q ss_pred CCCCEEEecCCCCCeEEEEEEeEEEEEEecCC-ceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeCHHH
Q 008913 402 PPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG-AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHH 477 (549)
Q Consensus 402 ~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~~~~ 477 (549)
.||+...+..+...++++|++|.+.+.. ++ + ...+++||.+=-. .+.+..... .+.+.++.+....
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~---~~~l~~Gd~~~ip---~~~~H~~~~--~~~~~~l~i~~~~ 102 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDF--ADGG---SMTIREGEMAVVP---KSVSHRPRS--ENGCSLVLIELSD 102 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEE--TTSC---EEEECTTEEEEEC---TTCCEEEEE--EEEEEEEEEECC-
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEE--CCCc---EEEECCCCEEEEC---CCCcEeeEe--CCCeEEEEEECCC
Confidence 3554332233323789999999999876 33 3 3578999975322 344444333 3567777776443
No 122
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=30.98 E-value=75 Score=30.99 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=34.8
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEec-CCceeeeEEecCCCeE
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMA 447 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~-~~~~~~~~~l~~G~~f 447 (549)
+....+.||...-..-....++.+|++|.+++...+ +|+. ....+++||.+
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~-~~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcE-EEEEeCCCCEE
Confidence 344566888866443334779999999999987643 3442 33478999965
No 123
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=30.70 E-value=1.3e+02 Score=28.80 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=35.5
Q ss_pred ccccccCCCCEEEecCCCC-CeEEEEEEeEEEEEEec-CCceeeeEEecCCCeEe
Q 008913 396 MKAEYFPPKVEIILQNEIP-TDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAG 448 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~v~~~~-~~~~~~~~~l~~G~~fG 448 (549)
+....+.||..+-..-... .++++|++|.+.+.... +|+ .....+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 4456778888775433333 78999999999887522 343 2346789999764
No 124
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=30.37 E-value=99 Score=30.42 Aligned_cols=79 Identities=8% Similarity=0.040 Sum_probs=50.6
Q ss_pred cccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEE-cceEEEEEeCH
Q 008913 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT-KRLSQVIRLSH 475 (549)
Q Consensus 397 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a-~~~~~l~~i~~ 475 (549)
....+.||+..-..-.....+|+|++|...+.. +|+ ...+++||+|-... +......-.. .+++.++.++-
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge---~~~~~~GD~~~iP~---g~~H~~~N~g~~e~~~ll~i~D 368 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGK---RFDWSEHDIFCVPA---WTWHEHCNTQERDDACLFSFND 368 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTE---EEEECTTCEEEECT---TCCEEEEECCSSCCEEEEEEES
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCE---EEEEeCCCEEEECC---CCeEEeEeCCCCCCeEEEEeeC
Confidence 456778888876555556789999999986654 554 35789999865442 3333332222 35677887765
Q ss_pred HHHHhhhc
Q 008913 476 HHLKQMVP 483 (549)
Q Consensus 476 ~~f~~l~~ 483 (549)
.-+.+-+.
T Consensus 369 ~Pl~~~Lg 376 (394)
T 3bu7_A 369 FPVMEKLG 376 (394)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 55554443
No 125
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=30.22 E-value=52 Score=18.69 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 008913 169 FLNLLRLWRLRRVGELFTRL 188 (549)
Q Consensus 169 ~l~llrllRl~ri~~~~~~l 188 (549)
.++.+|.+|.+|-.+.++.+
T Consensus 5 ~l~~lrtlR~LRpLr~isr~ 24 (28)
T 2lcm_A 5 TIKSLRVLRVLRPLKTIKRL 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhcchHHHhhc
Confidence 44555566666555555443
No 126
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=30.08 E-value=85 Score=24.20 Aligned_cols=67 Identities=9% Similarity=0.128 Sum_probs=36.0
Q ss_pred ccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 400 YFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 400 ~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
.+.||...-..-.....++++++|.+.+.. +++. ...+.+||.+=-. .+.++.......+.+.++.+
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~--~~~l~~Gd~i~ip---~~~~H~~~~~~~~~~~~l~i 99 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQE--PHNYKEGNIVYVP---FNVKMLIQNINSDILEFFVV 99 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEE--TTSC--CEEEETTCEEEEC---TTCEEEEECCSSSEEEEEEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCEE--EEEeCCCCEEEEC---CCCcEEeEcCCCCCEEEEEE
Confidence 345555442222235678999999999876 4432 1268899864322 23333332222234455555
No 127
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=30.04 E-value=1.6e+02 Score=28.28 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=33.6
Q ss_pred ccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEec-CCceeeeEEecCCCeEe
Q 008913 398 AEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAG 448 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~-~~~~~~~~~l~~G~~fG 448 (549)
...+.||...-..-.. ..++++|++|.+++.... +|+. ....+++||.+=
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~-~~~~l~~GD~~~ 107 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV-EIADVDKGGLWY 107 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE-EEEEEETTEEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE-EEEEEcCCCEEE
Confidence 4556788765433333 779999999999887633 3432 346899999643
No 128
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=29.99 E-value=1.5e+02 Score=25.22 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=30.1
Q ss_pred cccCCCCEEEe--cCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 399 EYFPPKVEIIL--QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 399 ~~~~~~e~I~~--~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
..+.||...-. ......++++|++|.+.+.. +|. ...+++||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~---~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ---WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE---EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE---EEEeCCCCEE
Confidence 45567766542 22334689999999999876 443 3478999965
No 129
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=29.89 E-value=1.3e+02 Score=23.53 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=35.9
Q ss_pred cccCCCCEEE--ecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 399 EYFPPKVEII--LQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 399 ~~~~~~e~I~--~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
..+.||..+- ..-+....+|++++|.+.+.. +++ ...+++||.+=-. .+.+........+++.++.
T Consensus 31 ~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i--~~~---~~~l~~Gd~i~i~---~~~~H~~~~~~~~~~~~~~ 98 (125)
T 3cew_A 31 NHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI--DGE---KIELQAGDWLRIA---PDGKRQISAASDSPIGFLC 98 (125)
T ss_dssp EEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE--TTE---EEEEETTEEEEEC---TTCCEEEEEBTTBCEEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEEC---CCCcEEEEcCCCCCEEEEE
Confidence 4556666542 222223357779999999876 443 3568899865322 3444443332234455443
No 130
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=29.54 E-value=1.2e+02 Score=22.44 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=32.5
Q ss_pred CeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeC
Q 008913 415 TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474 (549)
Q Consensus 415 ~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~ 474 (549)
..++++++|.+.+.. +++ ...+.+|+.+=-. .+.+.. +++.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H~--~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF--RDQ---NITLQAGEMYVIP---KGVEHK--PMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEEC--SSC---EEEEETTEEEEEC---TTCCBE--EEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE--CCE---EEEEcCCCEEEEC---CCCeEe--eEcCCCCEEEEEE
Confidence 689999999998865 443 2467899864322 244443 3344678877765
No 131
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=29.13 E-value=1.1e+02 Score=25.52 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=31.1
Q ss_pred ccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCC----ceeeeEEecCCCeEe
Q 008913 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG----AEQFLTKLGSADMAG 448 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~----~~~~~~~l~~G~~fG 448 (549)
...+.||..+-..-....++++|++|.+.+...+.+ .+.....+.+||.+=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 345667765432222356799999999998873211 111345789999753
No 132
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=29.12 E-value=1.3e+02 Score=27.70 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=51.8
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEE-ecCCCeEech---hhhcCCCeeeEEEEcceEEEE
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTK-LGSADMAGEI---GVIFNIPQPFTVRTKRLSQVI 471 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~-l~~G~~fGe~---~~l~~~~~~~~v~a~~~~~l~ 471 (549)
+......+|+..-.+-+.-+-..+++.|.+.|.. +|.. ... -+..+.|... ++.-+....++++|.++++++
T Consensus 31 f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~--~g~~--~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~ 106 (270)
T 2qjv_A 31 FDVWQLXAGESITLPSDERERCLVLVAGLASVXA--ADSF--FYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELA 106 (270)
T ss_dssp EEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE--TTEE--EEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEE
T ss_pred EEEEEecCCCEEEecCCCcEEEEEEecceEEEEE--CCEE--EeccccccccccCCCCcEEEECCCCEEEEEecCCceEE
Confidence 4556678999887766555557778899999876 5532 222 2455666653 444444458899999999998
Q ss_pred EeCHH
Q 008913 472 RLSHH 476 (549)
Q Consensus 472 ~i~~~ 476 (549)
..+..
T Consensus 107 v~sAp 111 (270)
T 2qjv_A 107 VCSAP 111 (270)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 76643
No 133
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=29.12 E-value=52 Score=33.79 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=12.6
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhh
Q 008913 171 NLLRLWRLRRVGELFTRLEKDIR 193 (549)
Q Consensus 171 ~llrllRl~ri~~~~~~l~~~~~ 193 (549)
+.+|++|++|+.|+++-++....
T Consensus 306 ~~lrvlRllRvlRilkL~r~~~~ 328 (514)
T 2r9r_B 306 RVVQIFRIMRILRIFKLSRHSKG 328 (514)
T ss_dssp HHHHHHHHHGGGGGGGGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Confidence 45566666666666654443333
No 134
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=28.88 E-value=87 Score=27.88 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=29.5
Q ss_pred ccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 400 YFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 400 ~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
.+.||..+=......+++|+|++|.+++.. +++. ...+++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v-~~g~---~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHL-RNAP---DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEE-TTSC---CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEE-CCCC---EEecCCCCEEE
Confidence 345554433334557799999999998876 2233 35689998643
No 135
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=28.48 E-value=65 Score=32.35 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=38.0
Q ss_pred cccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 395 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
.+....+.||..+-..-..++++++|++|++.+.....+.. ....+++||.+-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEE
Confidence 34456788998876655556789999999998765323322 466899999765
No 136
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=28.07 E-value=90 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=29.2
Q ss_pred hhhhccCCCHHHHHHHHhcccccccCCCCEEEecCCCCCeEEE
Q 008913 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYI 419 (549)
Q Consensus 377 ~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~ 419 (549)
++|.|++++....+++... .+||+|+++...++++-+
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 5799999998888777766 359999999877776433
No 137
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=27.85 E-value=94 Score=31.73 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=41.1
Q ss_pred HHHHHhcccccccCCCCEEEecCC-CCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEe
Q 008913 389 IAQMVSEMKAEYFPPKVEIILQNE-IPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 389 l~~l~~~~~~~~~~~~e~I~~~g~-~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fG 448 (549)
+..+-..+....+.||..+-..-. .++++++|++|.+.+... .+|.......+++||++=
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 344455566677889987644333 367999999999988763 344444455799999764
No 138
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=27.40 E-value=1.1e+02 Score=31.13 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=41.7
Q ss_pred HHHHHhcccccccCCCCEEEecC-CCCCeEEEEEEeEEEEEEec-CCceeeeEEecCCCeEech
Q 008913 389 IAQMVSEMKAEYFPPKVEIILQN-EIPTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 389 l~~l~~~~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~v~~~~-~~~~~~~~~l~~G~~fGe~ 450 (549)
+..+-..+....+.||..+-..- ..++++++|++|.+.+.... +|.......+++||+|=-.
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vvP 425 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVVP 425 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEEC
Confidence 44444566677888998765433 33678999999999887633 3443333679999976433
No 139
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=27.36 E-value=1.3e+02 Score=27.06 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=40.6
Q ss_pred cccCC-CCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 399 EYFPP-KVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 399 ~~~~~-~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
..+.| |..+-..-.....+++|++|.+++.. +|+ ...+++||.+--. .+.+........+.+.++.
T Consensus 150 ~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~H~~~n~~~~~~~~l~ 216 (243)
T 3h7j_A 150 AKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV--EGC---TVEMKFGTAYFCE---PREDHGAINRSEKESKSIN 216 (243)
T ss_dssp EEECTTTEEEEEECCSSEEEEEECSSCEEEEE--TTE---EEEECTTCEEEEC---TTCCEEEEECSSSCEEEEE
T ss_pred EEECCCCCcCCCEeCCCcEEEEEEECEEEEEE--CCE---EEEECCCCEEEEC---CCCcEEeEeCCCCCEEEEE
Confidence 34778 77665444455689999999999876 443 2468999975433 2444443333334455443
No 140
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=26.34 E-value=16 Score=27.95 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=31.5
Q ss_pred ccccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 396 MKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
.+...++||+-+-.+-.. ....|+|.+|.+.+.. .+|.. ....+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~-~d~~~-~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA-PDGTR-SLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC-TTSCE-ECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe-CCCce-EEEEecCCcEE
Confidence 345667888888554444 3467889999998875 33332 33457888753
No 141
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=26.07 E-value=2.3e+02 Score=25.41 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=39.8
Q ss_pred cccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 399 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
..++||...-..- .+++.+|++|.+++.. +|+ ...+++||++=-. .+.++.+... +.++++.+
T Consensus 55 ~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~---~~~l~~Gd~~~~p---~~~~H~~~n~--~~~~~l~v 117 (246)
T 1sfn_A 55 AEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE---TRTLREYDYVYLP---AGEKHMLTAK--TDARVSVF 117 (246)
T ss_dssp EEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC---EEEECTTEEEEEC---TTCCCEEEEE--EEEEEEEE
T ss_pred EEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEeC--CCEEEEEE
Confidence 4567776554332 6678999999999875 454 3578999975433 3444443333 66666655
No 142
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=26.03 E-value=60 Score=26.92 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHHH
Q 008913 170 LNLLRLWRLRRVGELFT 186 (549)
Q Consensus 170 l~llrllRl~ri~~~~~ 186 (549)
++++|++|++|+.++++
T Consensus 106 lr~lRvlRllRv~Rllr 122 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLR 122 (147)
T ss_dssp HHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 143
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=25.98 E-value=1e+02 Score=31.16 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=37.9
Q ss_pred hcccccccCCCCEEEecCCC-CCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEe
Q 008913 394 SEMKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 394 ~~~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fG 448 (549)
..+....+.||..+-..-.+ ++++++|++|.+.+... .+|.......+++||++=
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~v 394 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLI 394 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEE
Confidence 34556678888876443333 67899999999988763 345444456799999764
No 144
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=25.51 E-value=1.4e+02 Score=24.19 Aligned_cols=70 Identities=10% Similarity=-0.097 Sum_probs=38.0
Q ss_pred cccCCCCEEEecC-CCCCeEEEEEEeEEEEEEecCCce---eeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 399 EYFPPKVEIILQN-EIPTDLYIVVSGAVDVLIYKNGAE---QFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 399 ~~~~~~e~I~~~g-~~~~~ly~I~~G~v~v~~~~~~~~---~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
..+.||..+-..- ...+.+++|++|.+.+... +.. .....+.+||.+=-. .+.+........+.+.++.+
T Consensus 48 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~~~~~~~~~~l~~Gd~i~ip---~g~~H~~~n~~~~~~~~l~i 121 (148)
T 2oa2_A 48 MSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMG--HRQDNLHFQEEVFDDYAILIP---AGTWHNVRNTGNRPLKLYSI 121 (148)
T ss_dssp EEECTTCBCCCBCCTTCEEEEEEEESEEEEEEE--SBTTBCCEEEEEETTCEEEEC---TTCEEEEEECSSSCEEEEEE
T ss_pred EEECCCCccCceECCCCcEEEEEEeCEEEEEEC--CccccceeeEEECCCCEEEEC---CCCcEEEEECCCCCEEEEEE
Confidence 4556776543222 2245899999999998762 221 012578899864322 34444333333345554443
No 145
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=25.10 E-value=1e+02 Score=31.30 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=31.7
Q ss_pred chhhhHHHHHHhhhhhhhccccccc--ccCCchhHHHHHHHHHHHH
Q 008913 245 SIWLGYTYSIYWSIVTLTTVGYGDL--HAVNTGEKVFNMLYMLFNI 288 (549)
Q Consensus 245 ~~~~~Y~~sly~a~~t~ttvGygdi--~p~t~~e~~~~i~~~l~g~ 288 (549)
++.+....|++-+++..||.||... ..-+....++.++.|++|.
T Consensus 302 ~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG 347 (494)
T 3pjz_A 302 SPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGG 347 (494)
T ss_dssp SHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcC
Confidence 3456788899999999999999744 4444555667777777654
No 146
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=25.05 E-value=1.6e+02 Score=24.28 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=30.2
Q ss_pred ccccCCCCE-E-EecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeE
Q 008913 398 AEYFPPKVE-I-ILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (549)
Q Consensus 398 ~~~~~~~e~-I-~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~f 447 (549)
...+.||.. . .+......++++|++|.+.+.. +++ ...+++||.+
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END---QYPIAPGDFV 96 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE---EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE---EEEeCCCCEE
Confidence 355677763 2 1222246789999999999876 443 3578999976
No 147
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=24.62 E-value=2.1e+02 Score=21.31 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=37.7
Q ss_pred ccccCCCCEEEecCCCC-CeE-EEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEE
Q 008913 398 AEYFPPKVEIILQNEIP-TDL-YIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~-~~l-y~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (549)
...+.||..+-..-... ..+ +++++|.+.+.. ++|+ ...+.+||.+=-. .+.++ .+++.+++.++.
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~-~~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~l~ 104 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG-DGDA---VIPAPRGAVLVAP---ISTPH--GVRAVTDMKVLV 104 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC-GGGC---EEEECTTEEEEEE---TTSCE--EEEESSSEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe-CCCE---EEEECCCCEEEeC---CCCcE--EEEEcCCcEEEE
Confidence 34567887764433332 456 799999998865 2133 2468999864322 23333 344555555443
No 148
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=24.44 E-value=82 Score=29.20 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhh
Q 008913 170 LNLLRLWRLRRVGELFTRLEK 190 (549)
Q Consensus 170 l~llrllRl~ri~~~~~~l~~ 190 (549)
++.+|++|++|+.|+.+..+.
T Consensus 113 ~~~lr~~RilR~lrl~~~~~~ 133 (285)
T 3rvy_A 113 FEILRVLRVLRLFRLVTAVPQ 133 (285)
T ss_dssp CTHHHHHGGGGGGHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554443
No 149
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=24.34 E-value=1.7e+02 Score=26.22 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=43.2
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe-chhhhcCCCeeeEEEEcceEEEEEe
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG-EIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG-e~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
+....+.||..+-..-.....+.+|++|.+++.. +|. ...+.+||.+= .. .+.+........+.|.++-+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~---~~~l~~Gd~i~~ip---~~~~H~~~n~~~~~~~~l~i 106 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV---TRKMTALESAYIAP---PHVPHGARNDTDQEVIAIDI 106 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE---EEEEETTTCEEEEC---TTCCEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE---EEEECCCCEEEEcC---CCCcEeeEeCCCCcEEEEEE
Confidence 3445578888776555556789999999999876 443 35788998431 11 23444333333344666655
No 150
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=24.21 E-value=1.4e+02 Score=30.50 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHhcccccccCCCCEEEec-CCCCCeEEEEEEeEEEEEEe-cCCceeeeEEecCCCeEech
Q 008913 389 IAQMVSEMKAEYFPPKVEIILQ-NEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (549)
Q Consensus 389 l~~l~~~~~~~~~~~~e~I~~~-g~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~l~~G~~fGe~ 450 (549)
+..+-..+....+.||-++-.. .-.++++.+|++|.+.+... .+|.......+.+||+|=-.
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P 452 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVP 452 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEEC
Confidence 4455456667888898887543 23367999999999998763 34555567789999986433
No 151
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=23.15 E-value=17 Score=23.28 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=14.2
Q ss_pred HHHHHhhCCHHHHHHHHH
Q 008913 351 QEEVLEDLPKAIRSSISQ 368 (549)
Q Consensus 351 ~~~~l~~Lp~~Lr~ei~~ 368 (549)
..++++.||..+++|+..
T Consensus 17 D~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILS 34 (48)
T ss_dssp CGGGTTTSCHHHHHHHTT
T ss_pred CHHHHHHCcHHHHHHHHh
Confidence 567889999998888643
No 152
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.05 E-value=91 Score=28.78 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=40.6
Q ss_pred ccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecC-CceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeC
Q 008913 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKN-GAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474 (549)
Q Consensus 398 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~-~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~ 474 (549)
...+.||..--.....++++.+|++|.+++.. + |++ ..+++|+++=.. .+.+. +++..+.++++.+.
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l--~~g~~---~~L~~Gds~y~p---~~~~H--~~~N~~~Ar~l~V~ 141 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN--TSSSS---KKLTVDSYAYLP---PNFHH--SLDCVESATLVVFE 141 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC----CCC---EEECTTEEEEEC---TTCCC--EEEESSCEEEEEEE
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE--CCCcE---EEEcCCCEEEEC---CCCCE--EEEeCCCEEEEEEE
Confidence 45567776532223345679999999999975 3 442 478999965332 23333 33345678877774
No 153
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=22.59 E-value=1.3e+02 Score=24.63 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=42.4
Q ss_pred ccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 396 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
+....++||..+-.........++|++|.... .+|....-..+++|+++=... +.+... +.+.+.|.++.+
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~~~~~~~Gd~~~~p~---g~~H~p-~~~~e~~~~l~~ 116 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAGGDTAIAPGYGYESA---NARHDK-TEFPVASEFYMS 116 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGTSEEEESSEEEEECT---TCEESC-CEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEecceEeCCCEEEEECc---CCccCC-eECCCCeEEEEE
Confidence 44567889988876666667789999999974 233321113577888755442 232221 234455665544
No 154
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=22.57 E-value=1e+02 Score=28.63 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred hcccccccCCCCEEEe-cCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 394 SEMKAEYFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 394 ~~~~~~~~~~~e~I~~-~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
..+....++||..+-. +-....+.++|++|+..+.. +|+ ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~---~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD---WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE---EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 3466678899999864 44444578999999998865 554 35789999753
No 155
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=22.00 E-value=89 Score=31.02 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=37.6
Q ss_pred cccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 395 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
.+....+.||..+-......+++++|++|.+.+.....+.. ....+++||.+-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC-eEEEecCCCEEE
Confidence 34567788998776665556789999999998865323322 356799999764
No 156
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=21.86 E-value=2.5e+02 Score=23.99 Aligned_cols=56 Identities=5% Similarity=0.035 Sum_probs=32.6
Q ss_pred CeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEe
Q 008913 415 TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (549)
Q Consensus 415 ~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i 473 (549)
.++++|++|.+.+...+...+.....+++||.+=-. .+.++...-...+.+.++.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip---~g~~H~~~N~g~~~~~~l~v 152 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVP---PYWAHRTVNIGDEPFIFLAI 152 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEEC---TTCEEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEEC---CCCeEEEEECCcccEEEEEE
Confidence 589999999999886332112334679999965322 23443333333344555544
No 157
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.59 E-value=1.2e+02 Score=27.53 Aligned_cols=68 Identities=13% Similarity=-0.018 Sum_probs=39.9
Q ss_pred cccCCCCEEEec-C-CCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEcceEEEEEeC
Q 008913 399 EYFPPKVEIILQ-N-EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474 (549)
Q Consensus 399 ~~~~~~e~I~~~-g-~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~i~ 474 (549)
..+.||...-.. . ...+++.+|++|.+++.. +|+ ...+++||++--. .+.++...-...+.++++.+.
T Consensus 64 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~--~~~---~~~L~~Gd~~~~~---~~~~H~~~N~~~~~~~~l~v~ 133 (261)
T 1rc6_A 64 VTLHQNGGNQQGFGGEGIETFLYVISGNITAKA--EGK---TFALSEGGYLYCP---PGSLMTFVNAQAEDSQIFLYK 133 (261)
T ss_dssp EEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE--TTE---EEEEETTEEEEEC---TTCCCEEEECSSSCEEEEEEE
T ss_pred EEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEeCCCCCEEEEEEE
Confidence 445666544322 1 223568999999999986 454 3578999975432 344444443334556666553
No 158
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=21.34 E-value=2.5e+02 Score=22.89 Aligned_cols=87 Identities=8% Similarity=0.033 Sum_probs=50.3
Q ss_pred CCCCEEEe-cCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEc-ceEEEEEeCHHHHH
Q 008913 402 PPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK-RLSQVIRLSHHHLK 479 (549)
Q Consensus 402 ~~~e~I~~-~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~-~~~~l~~i~~~~f~ 479 (549)
+||.+.-. .......+++.++|++++.. ++|++.....+.+... | +.-..---.++.+. ++|.++.+..+.+.
T Consensus 43 ~~g~~RG~H~Hk~~~q~li~l~Gs~~v~l-dDg~~~~~~~L~~~~~-g---L~IppgvWh~~~~~s~~avllvlas~~Yd 117 (141)
T 2pa7_A 43 KGEEPRGFHAHKKLEQVLVCLNGSCRVIL-DDGNIIQEITLDSPAV-G---LYVGPAVWHEMHDFSSDCVMMVLASDYYD 117 (141)
T ss_dssp CSSCCEEEEEESSCCEEEEEEESCEEEEE-ECSSCEEEEEECCTTE-E---EEECTTCEEEEECCCTTCEEEEEESSCCC
T ss_pred CCCCEECcCcCCCceEEEEEEccEEEEEE-ECCcEEEEEEECCCCc-E---EEeCCCEEEEEEEcCCCeEEEEECCCCcC
Confidence 46665533 34556689999999999987 5666655556776553 3 11111112233343 35888888777665
Q ss_pred hhhccCcchHHHHHHH
Q 008913 480 QMVPIDHGDGKKIMNN 495 (549)
Q Consensus 480 ~l~~~~p~~~~~~~~~ 495 (549)
+ ..+--+.+.+++.
T Consensus 118 ~--~dyir~y~~f~~~ 131 (141)
T 2pa7_A 118 E--TDYIRQYDNFKKY 131 (141)
T ss_dssp G--GGEECCHHHHHHH
T ss_pred H--HHeeecHHHHHHH
Confidence 4 3444444555443
No 159
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.24 E-value=1e+02 Score=30.84 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=38.3
Q ss_pred cccccccCCCCEEEecCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 395 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
.+....+.||..+-..-...+++++|++|.+.+....++. .....+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~-~~~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDS-RDSYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC-EEEEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCC-CEEEEeCCCCEEE
Confidence 3456778899888766555678999999999886633332 2456799999764
No 160
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=21.17 E-value=96 Score=23.99 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=28.4
Q ss_pred CCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEE
Q 008913 412 EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTV 462 (549)
Q Consensus 412 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v 462 (549)
...+++++|++|.+++.. ++++ ....+++||.+--. .+.++....
T Consensus 51 ~~~~E~~~Vl~G~~~l~~--~~~~-~~~~l~~Gd~i~ip---a~~~H~~~n 95 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC--EGDT-APRVMRPGDWLHVP---AHCRHRVAW 95 (112)
T ss_dssp CSSEEEEEEEESCEEEEE--TTCS-SCEEECTTEEEEEC---TTCCEEEEE
T ss_pred CCccEEEEEEeCeEEEEE--CCEE-EEEEECCCCEEEEC---CCCcEEEEe
Confidence 345689999999999976 3332 11468999975533 244544433
No 161
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=20.44 E-value=90 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=21.6
Q ss_pred CCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEe
Q 008913 414 PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (549)
Q Consensus 414 ~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fG 448 (549)
..++++|++|.+.+...-+|+ ...+++||.+=
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~~---~~~l~~Gd~~~ 90 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQGR---TEEVGPGEAIF 90 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGTE---EEEECTTCEEE
T ss_pred CceEEEEEEeEEEEEEeECCE---EEEECCCCEEE
Confidence 445667999999987212443 35789999653
No 162
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=20.39 E-value=2.9e+02 Score=25.24 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=42.3
Q ss_pred ccccccCCCCEEEe-cCCCCCeEEEEEEeEEEEEEecCCceeeeEEecCCCeEechhhhcCCCeeeEEEEc-ceEEEEEe
Q 008913 396 MKAEYFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK-RLSQVIRL 473 (549)
Q Consensus 396 ~~~~~~~~~e~I~~-~g~~~~~ly~I~~G~v~v~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~-~~~~l~~i 473 (549)
+....+.||..+-. .-....++++|++|.+.+.. +++ ...+++||.+=-. .+.+..+..... +.+.+++.
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~---~~~l~~GD~i~i~---~~~~H~~~n~~~~~~~~~l~~ 255 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNE---WYPVEKGDYIFMS---AYVPQAAYAVGREEPLMYVYS 255 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEeCCCCCCEEEEEE
Confidence 33456778876633 33345689999999999876 443 3578999975322 344544443333 44555443
Done!