BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008914
         (549 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EGZ|A Chain A, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
           Enzyme
 pdb|1EGZ|B Chain B, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
           Enzyme
 pdb|1EGZ|C Chain C, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
           Enzyme
          Length = 291

 Score = 34.7 bits (78), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 130 YTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAG 189
           +++ I P   A++ + R  AI P  ++ +   +  QNV + + DP+  + + +T+ F+AG
Sbjct: 139 WSNTIKPYAEAVISAIR--AIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAG 196

Query: 190 V 190
            
Sbjct: 197 T 197


>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp, Mg And Zn
 pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp And Mn
 pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp, Mn And Zn
          Length = 1041

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 297 LSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQL 334
           + V+ +  + YL   DK   KI+ H +GG NP + H+L
Sbjct: 322 IPVVATGNVHYLNPEDKIYRKILIHSQGGANPLNRHEL 359


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,904,429
Number of Sequences: 62578
Number of extensions: 443030
Number of successful extensions: 1028
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 6
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)