Query 008914
Match_columns 549
No_of_seqs 328 out of 1924
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 18:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 1.8E-88 3.9E-93 750.8 34.7 504 30-541 13-546 (665)
2 TIGR00815 sulP high affinity s 100.0 8.7E-82 1.9E-86 694.0 50.8 461 83-546 1-482 (563)
3 COG0659 SUL1 Sulfate permease 100.0 1.4E-78 3E-83 658.6 47.1 447 78-546 3-471 (554)
4 PRK11660 putative transporter; 100.0 6.3E-77 1.4E-81 655.6 49.9 440 86-545 19-488 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 5.7E-50 1.2E-54 405.6 16.9 280 195-475 1-280 (280)
6 COG2252 Xanthine/uracil/vitami 100.0 6.6E-32 1.4E-36 279.3 34.1 387 75-508 3-409 (436)
7 TIGR03173 pbuX xanthine permea 100.0 7.3E-27 1.6E-31 248.5 34.7 321 107-472 11-352 (406)
8 TIGR00801 ncs2 uracil-xanthine 99.9 2.7E-25 5.8E-30 236.5 33.1 326 106-471 20-367 (415)
9 PRK10720 uracil transporter; P 99.9 2.6E-24 5.7E-29 229.2 34.3 357 107-512 30-415 (428)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 2.8E-25 6E-30 181.1 7.5 83 82-164 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 4.5E-21 9.8E-26 204.3 34.9 327 96-465 29-372 (429)
12 PF00860 Xan_ur_permease: Perm 99.9 5.4E-19 1.2E-23 187.1 30.8 345 97-471 1-365 (389)
13 PRK11412 putative uracil/xanth 99.8 5.1E-17 1.1E-21 172.4 34.0 335 106-472 23-374 (433)
14 COG2233 UraA Xanthine/uracil p 99.8 1E-17 2.2E-22 175.4 24.5 309 127-470 57-377 (451)
15 TIGR00834 ae anion exchange pr 99.6 1.9E-12 4.1E-17 145.9 35.2 347 100-457 372-790 (900)
16 TIGR00843 benE benzoate transp 99.6 4.6E-12 1E-16 131.7 33.6 340 98-498 22-391 (395)
17 KOG1172 Na+-independent Cl/HCO 99.5 5.8E-11 1.3E-15 130.9 36.4 336 113-457 376-766 (876)
18 PF03594 BenE: Benzoate membra 99.4 5.4E-09 1.2E-13 107.2 34.0 342 98-499 6-376 (378)
19 PF00955 HCO3_cotransp: HCO3- 99.2 1E-11 2.3E-16 133.3 3.4 348 103-458 39-472 (510)
20 COG3135 BenE Uncharacterized p 98.9 6E-07 1.3E-11 90.4 24.7 308 133-501 67-393 (402)
21 KOG1292 Xanthine/uracil transp 98.6 4E-06 8.6E-11 87.9 21.0 315 108-457 29-390 (510)
22 PF11840 DUF3360: Protein of u 98.4 0.00017 3.6E-09 73.2 23.6 310 114-471 80-418 (492)
23 PRK10720 uracil transporter; P 93.0 0.83 1.8E-05 49.3 11.3 60 379-442 261-320 (428)
24 TIGR00815 sulP high affinity s 90.1 15 0.00032 41.2 17.6 116 89-223 251-373 (563)
25 TIGR03173 pbuX xanthine permea 85.7 9.1 0.0002 40.9 12.1 108 105-229 226-343 (406)
26 COG0659 SUL1 Sulfate permease 84.5 17 0.00037 40.6 13.7 107 345-457 25-143 (554)
27 TIGR00801 ncs2 uracil-xanthine 83.7 7.5 0.00016 41.7 10.3 111 104-231 240-361 (415)
28 PRK11412 putative uracil/xanth 78.6 19 0.0004 39.0 11.1 60 377-442 274-335 (433)
29 COG2233 UraA Xanthine/uracil p 76.9 13 0.00028 40.2 9.1 36 108-143 64-100 (451)
30 TIGR03616 RutG pyrimidine util 71.9 23 0.00051 38.2 9.8 86 126-229 283-370 (429)
31 PRK11660 putative transporter; 70.3 41 0.00089 37.7 11.6 169 334-504 275-446 (568)
32 PF00860 Xan_ur_permease: Perm 64.0 84 0.0018 33.3 12.0 116 99-231 233-359 (389)
33 PHA00736 hypothetical protein 51.3 1.1E+02 0.0024 23.6 7.1 68 114-191 4-72 (79)
34 PF03956 DUF340: Membrane prot 50.7 53 0.0011 31.3 6.9 55 438-492 23-78 (191)
35 PF00916 Sulfate_transp: Sulfa 47.1 1.3E+02 0.0029 29.9 9.6 132 337-469 146-277 (280)
36 TIGR00843 benE benzoate transp 44.0 4.3E+02 0.0094 28.2 14.3 104 344-450 23-143 (395)
37 PF01102 Glycophorin_A: Glycop 29.1 86 0.0019 27.6 4.2 24 486-510 71-94 (122)
38 COG1963 Uncharacterized protei 26.9 4.5E+02 0.0098 23.9 8.2 25 393-417 46-70 (153)
39 TIGR00210 gltS sodium--glutama 26.3 1.2E+02 0.0027 32.3 5.6 39 186-224 9-51 (398)
40 PF03904 DUF334: Domain of unk 26.1 3.6E+02 0.0079 26.3 8.1 78 414-506 144-226 (230)
41 PF06686 SpoIIIAC: Stage III s 26.0 2E+02 0.0042 21.5 5.2 47 153-207 8-54 (58)
42 COG4129 Predicted membrane pro 25.0 2.3E+02 0.0049 29.5 7.1 52 410-467 8-59 (332)
43 PRK12600 putative monovalent c 25.0 1.4E+02 0.003 25.0 4.5 31 345-375 61-91 (94)
44 PF03818 MadM: Malonate/sodium 24.2 2.5E+02 0.0054 21.4 5.2 17 294-310 41-57 (60)
45 COG1296 AzlC Predicted branche 24.1 1.2E+02 0.0027 29.9 4.8 45 93-140 9-56 (238)
46 KOG0236 Sulfate/bicarbonate/ox 23.7 1.1E+03 0.025 26.9 13.7 102 103-222 333-440 (665)
47 PRK04125 murein hydrolase regu 23.3 87 0.0019 28.3 3.2 23 282-304 24-46 (141)
48 COG4769 Predicted membrane pro 23.2 6.2E+02 0.013 23.6 8.9 116 107-228 39-160 (181)
49 PRK09757 PTS system N-acetylga 22.8 7.9E+02 0.017 24.7 11.1 28 196-223 163-190 (267)
50 cd06844 STAS Sulphate Transpor 22.4 76 0.0016 26.2 2.6 30 515-545 5-34 (100)
51 TIGR00822 EII-Sor PTS system, 21.7 8.3E+02 0.018 24.5 16.1 29 196-224 162-190 (265)
52 TIGR02886 spore_II_AA anti-sig 21.6 80 0.0017 26.3 2.6 30 515-545 5-34 (106)
53 PRK09757 PTS system N-acetylga 21.4 6.3E+02 0.014 25.4 9.2 76 424-505 154-242 (267)
54 COG3715 ManY Phosphotransferas 21.1 4.5E+02 0.0096 26.4 7.9 64 374-438 51-114 (265)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-88 Score=750.83 Aligned_cols=504 Identities=39% Similarity=0.602 Sum_probs=436.3
Q ss_pred hccccCCCCCCchhHHhhhhhhhhcCCCCcCcccccccchhhhhHHHhhhccccccccccCCCh-hhhhhhHHHHHHHHH
Q 008914 30 ARWLLNSPDPPSIWHELAGSIREAFFPRNKLSSSSRVKQTWRRSAFSFLRGLFPILNWGRNYKA-SKFKSDLMAGLTLAS 108 (549)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~wl~~y~~-~~l~~DiiAGltv~~ 108 (549)
.++.++.|+.+...++.++..+++.+++++.++..+.++++++++.++++++||+++|+|+|++ +++.+|++||+|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~ 92 (665)
T KOG0236|consen 13 SRASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGS 92 (665)
T ss_pred ccccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeee
Confidence 4455566666666666677777765556666555222333555599999999999999999999 789999999999999
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHHH
Q 008914 109 LSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAA---DPVAYRKLVFTVT 185 (549)
Q Consensus 109 ~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~---~~~~~~~~~~~~~ 185 (549)
+.+||+||||.+||+||+||||++|+|+++|++||+|||+++||+|++|+|+++++++..++.. ++..+++.+.+++
T Consensus 93 l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt 172 (665)
T KOG0236|consen 93 LSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLT 172 (665)
T ss_pred eecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887665433 4567789999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHH---HHHhcccCCcchH
Q 008914 186 FFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGS---VFSSLHHSYWYPL 262 (549)
Q Consensus 186 ~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 262 (549)
|++|++|++||++|||++++|+|+|++.||++|+|++|+.+|+|+++|+++.+.+.+....+.. ...+.++ . +.
T Consensus 173 ~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 249 (665)
T KOG0236|consen 173 FLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPK--T-LA 249 (665)
T ss_pred HHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhcccc--c-ch
Confidence 9999999999999999999999999999999999999999999999999966555554443333 3333333 2 78
Q ss_pred HHHHHHHHHHHHHHHHH-hhhccccccccccchhHHHHHHHHHHHHHhccCCC-ceeEeeecccCCCCCcccccCCChhh
Q 008914 263 NFVLGCSFLIFLLIARF-IGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKH-GVKIVKHIKGGLNPSSAHQLQLTGPH 340 (549)
Q Consensus 263 ~~~ig~~~l~~ll~~~~-~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~-~v~~vg~ip~glp~~~~p~~~~~~~~ 340 (549)
+++++++++++++..|. ..++.+|.+|+|.|.+++++|++|+++|.++.+.+ ....++++|+|+|+|++|.+++..
T Consensus 250 ~~~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~-- 327 (665)
T KOG0236|consen 250 TLVLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP-- 327 (665)
T ss_pred hhhhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH--
Confidence 89999999999999994 44555666679999999999999999999988764 556667999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCCcccchhH
Q 008914 341 LGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNI 420 (549)
Q Consensus 341 ~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ls~i 420 (549)
...+.++++++++++|+++++|+++++++|++|.||||+|+|++|++||||+|+|+|++++||++|.++|+|||++|+
T Consensus 328 --~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i 405 (665)
T KOG0236|consen 328 --QVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGI 405 (665)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHH
Confidence 566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008914 421 VMAITVLLSLELFTSLLYYTPIAILASIILSALPG-LIDINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAATVDM 499 (549)
Q Consensus 421 v~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~-li~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~~~~Gi~~gv~~s 499 (549)
++++++++++++++|+++|+|+|+||+|++.++.+ +++.++++++||.+|.|+++|+.|++++++.+++.|+++|++++
T Consensus 406 ~~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s 485 (665)
T KOG0236|consen 406 VSAALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFS 485 (665)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcc----c----------------cccCCCeEEEEecccccccccHHHHHHHh
Q 008914 500 LFYFQDRKSTIT----G----------------MASRPCLIFFTFSHGIWFIISVYYFIQKF 541 (549)
Q Consensus 500 l~~~~~~~s~~~----~----------------~~~~~~~~~~~~~~g~lFf~s~~~~~~~~ 541 (549)
++..+.|..+.. + ..+.+++.+.|..++.+|+ |...|.++.
T Consensus 486 ~~~ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~-~~~~~~~~~ 546 (665)
T KOG0236|consen 486 LFFIILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFG-NVESFEKKL 546 (665)
T ss_pred HHHHHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeec-cHHHHHHHH
Confidence 988877654321 1 2245788999999999988 444555544
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=8.7e-82 Score=694.00 Aligned_cols=461 Identities=47% Similarity=0.765 Sum_probs=420.0
Q ss_pred cccccccCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHH
Q 008914 83 PILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSA 162 (549)
Q Consensus 83 P~~~wl~~y~~~~l~~DiiAGltv~~~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~ 162 (549)
|+++|+++|+++++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+++++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCcc
Q 008914 163 LMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTD 242 (549)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~ 242 (549)
++++++.+......+.+.+.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99998754333346788889999999999999999999999999999999999999999999999999999986434456
Q ss_pred HHHHHHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeee
Q 008914 243 VVSVLGSVFSSLHHS-YWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKH 321 (549)
Q Consensus 243 ~~~~~~~~~~~l~~~-~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ 321 (549)
.++.+.+.+.++++. .|||.+++++++++++++..|++++|+++..+.+.|.+++++++++++++.++.+++++.++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777778777660 1499999999999999999898888888877788889999999999999988888899999999
Q ss_pred cccCCCCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccccccc
Q 008914 322 IKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGS 401 (549)
Q Consensus 322 ip~glp~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s 401 (549)
+|.|+|.+..|.+ ++..+.+.++.++++++++++|+++++|++++++||++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~--~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITL--DWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 9999987777765 45668889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCcccchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCchhHHHHHHHHH
Q 008914 402 FSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFL 481 (549)
Q Consensus 402 ~srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~~t~~ 481 (549)
++||++|+++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+|+++++++||.++.|+.+++++++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----------c---------ccCCCeEEEEecccccccccHHHHHHHh
Q 008914 482 GVLFASVEIGLLAATVDMLFYFQDRKSTITG-----------M---------ASRPCLIFFTFSHGIWFIISVYYFIQKF 541 (549)
Q Consensus 482 ~~~~~~~~~Gi~~gv~~sl~~~~~~~s~~~~-----------~---------~~~~~~~~~~~~~g~lFf~s~~~~~~~~ 541 (549)
++++.|++.|+++|++++++.+++|.++.+. . .+.|+.+++|++ |.+||+|.++|+|++
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~-g~L~F~na~~~~~~l 477 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVD-GPLYFANAEDLKDRL 477 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcC-CceEeCcHHHHHHHH
Confidence 9999999999999999999999999877221 0 012567777666 578888999999988
Q ss_pred hhhhc
Q 008914 542 IQATD 546 (549)
Q Consensus 542 ~~~~~ 546 (549)
++..+
T Consensus 478 ~~~~~ 482 (563)
T TIGR00815 478 LKRIE 482 (563)
T ss_pred HHHHh
Confidence 76544
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-78 Score=658.62 Aligned_cols=447 Identities=30% Similarity=0.471 Sum_probs=408.2
Q ss_pred hhccccccccccCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccCCCccccchhHHHH
Q 008914 78 LRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVS 157 (549)
Q Consensus 78 l~~~~P~~~wl~~y~~~~l~~DiiAGltv~~~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~s 157 (549)
+.+++|..+|.++|+.+|+++|++||+|+|++++||+||||..||+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCcccc
Q 008914 158 MLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHF 237 (549)
Q Consensus 158 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~ 237 (549)
++++..+.+.. +.+++.++++++++|++|+++|++|||++++|+|+||+.||++|+|++|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999543 345889999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCccHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCC--Cc
Q 008914 238 TNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADK--HG 315 (549)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~--~~ 315 (549)
. .+....+...+++..+ +||.+++++++++++++.++++.+|+| +++++++++|.++|.++.+. ++
T Consensus 157 ~--~~~~~~~~~l~~~~~~--~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G 224 (554)
T COG0659 157 V--SGFWAKVSALFTVLLT--INLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG 224 (554)
T ss_pred c--cchHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc
Confidence 3 3367777778899888 999999999999999999877766654 68999999999999998764 56
Q ss_pred eeEeeecccCCCCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccc
Q 008914 316 VKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSC 395 (549)
Q Consensus 316 v~~vg~ip~glp~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~ 395 (549)
++.|++|.++|.+.+|+++ .+.+.+.++.++++++++++|++.+++++++++|+++|.||||+|||++|+++++|||
T Consensus 225 -~i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg 301 (554)
T COG0659 225 -EIPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGG 301 (554)
T ss_pred -cCcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCC
Confidence 6889999999999999876 5568899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhcCCcccchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHh-cCCchhHH
Q 008914 396 YVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIY-KVDKLDFL 474 (549)
Q Consensus 396 ~p~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~-k~~~~d~~ 474 (549)
+|+||+++||++|.++|||||+|++++|+++++++++++|+++|||+|+|++++++++++|+|++.++.++ |.+|.|+.
T Consensus 302 ~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~ 381 (554)
T COG0659 302 IPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELL 381 (554)
T ss_pred ccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999944 58999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc------------------c-cCCCeEEEEecccccccccHH
Q 008914 475 ACIGAFLGVLFASVEIGLLAATVDMLFYFQDRKSTITGM------------------A-SRPCLIFFTFSHGIWFIISVY 535 (549)
Q Consensus 475 v~~~t~~~~~~~~~~~Gi~~gv~~sl~~~~~~~s~~~~~------------------~-~~~~~~~~~~~~g~lFf~s~~ 535 (549)
++++|++++++.+++.|+.+|++++++.+++|.++.... + ..|+..+||. +|-+||+|..
T Consensus 382 v~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ri-~gplfF~~~~ 460 (554)
T COG0659 382 VLLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAGSDNALKPLDEIGPGVLVYRL-SGPLFFGNAD 460 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCcccccccccccccCCCCeEEEEe-cCceEEeeHH
Confidence 999999999999999999999999999999988875421 0 1234556655 4566667999
Q ss_pred HHHHHhhhhhc
Q 008914 536 YFIQKFIQATD 546 (549)
Q Consensus 536 ~~~~~~~~~~~ 546 (549)
+|.+++++..|
T Consensus 461 ~~~~~i~~~~~ 471 (554)
T COG0659 461 RLERALLGLIE 471 (554)
T ss_pred HHHHHHHHHHh
Confidence 99998887766
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=6.3e-77 Score=655.56 Aligned_cols=440 Identities=22% Similarity=0.351 Sum_probs=395.0
Q ss_pred ccccCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHH
Q 008914 86 NWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQ 165 (549)
Q Consensus 86 ~wl~~y~~~~l~~DiiAGltv~~~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~ 165 (549)
+|+|+|+++++++|++||+|++++.+||+||||.+||+||++|||++++|+++|++||+||++++||++.+++++++.++
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHH
Q 008914 166 NVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~ 245 (549)
+.+ .+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|+++++|++..+.+.++.+
T Consensus 99 ~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 643 34566789999999999999999999999999999999999999999999999999986444567888
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeee----
Q 008914 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKH---- 321 (549)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~---- 321 (549)
.+.++++++++ +||.++++|++++++++.++++.+|.| ..++++++++++++.++....+++.+|+
T Consensus 170 ~l~~~~~~l~~--~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~ 239 (568)
T PRK11660 170 KVGALFQALPT--INWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHY 239 (568)
T ss_pred HHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeecccccc
Confidence 88889999999 999999999999999888765544433 6799999999999998877667777765
Q ss_pred ----------cccCCCCCcccc---------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHH
Q 008914 322 ----------IKGGLNPSSAHQ---------LQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVA 382 (549)
Q Consensus 322 ----------ip~glp~~~~p~---------~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a 382 (549)
+|+++|++.+|. .+++++.+.+.++.++.+++++++|++.+++.+++++++++|.||||+|
T Consensus 240 ~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a 319 (568)
T PRK11660 240 VLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVG 319 (568)
T ss_pred cccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 677777666663 2346667888899999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhccccccccccchhhhhhhcCCcccchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcCCHHHH
Q 008914 383 MGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEA 462 (549)
Q Consensus 383 ~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li~~~~~ 462 (549)
+|++|++||+|||+|++++++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+|++++
T Consensus 320 ~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~ 399 (568)
T PRK11660 320 QGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKV 399 (568)
T ss_pred HhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------cccCCCeEEEEecccccccccHH
Q 008914 463 INIYK-VDKLDFLACIGAFLGVLFASVEIGLLAATVDMLFYFQDRKSTITG------MASRPCLIFFTFSHGIWFIISVY 535 (549)
Q Consensus 463 ~~l~k-~~~~d~~v~~~t~~~~~~~~~~~Gi~~gv~~sl~~~~~~~s~~~~------~~~~~~~~~~~~~~g~lFf~s~~ 535 (549)
+++|| .+|.|+.+++.+++.+++.+++.|+++|++++++.+++|.++... .++.++..++|.+ |.+||+|.+
T Consensus 400 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~~~-g~L~F~n~~ 478 (568)
T PRK11660 400 VDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMTRLAPISVQDVPDDVLVLRIN-GPLFFAAAE 478 (568)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcEEEEEeC-CeeeeeeHH
Confidence 88776 688999999999999999999999999999999999998876432 1234677777775 678889999
Q ss_pred HHHHHhhhhh
Q 008914 536 YFIQKFIQAT 545 (549)
Q Consensus 536 ~~~~~~~~~~ 545 (549)
+++|+++++.
T Consensus 479 ~l~~~l~~~~ 488 (568)
T PRK11660 479 RLFTELESRT 488 (568)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=5.7e-50 Score=405.62 Aligned_cols=280 Identities=38% Similarity=0.602 Sum_probs=255.1
Q ss_pred HhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Q 008914 195 FGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFL 274 (549)
Q Consensus 195 lg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~l 274 (549)
||++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+..+...++++.+++. +||.+.++++++++++
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTI-TNWPTLAIGLVALVFL 79 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhc-cchhhhhhhhHHHHHH
Confidence 589999999999999999999999999999999999999985333445555566666666552 3899999999999999
Q ss_pred HHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeecccCCCCCcccccCCChhhHHHHHHHHHHHHHH
Q 008914 275 LIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVV 354 (549)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~glp~~~~p~~~~~~~~~~~~~~~~~~~~iv 354 (549)
...++..++++++.+.+.|.+++++++++++++.++.+.++++.+|++|.++|++.+|+.+++++.+.+.++.++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v 159 (280)
T PF00916_consen 80 LIIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIV 159 (280)
T ss_pred hhhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHH
Confidence 88888887777777778889999999999999999888889999999999999999995445556688889999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCCcccchhHHHHHHHHHHHHHhH
Q 008914 355 ALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFT 434 (549)
Q Consensus 355 ~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~ 434 (549)
+++|++.++|++++++++++|.||||+++|++|+++|+|||+|++++++||++|+++|+|||++++++++++++++++++
T Consensus 160 ~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~ 239 (280)
T PF00916_consen 160 GFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLA 239 (280)
T ss_pred HHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCchhHHH
Q 008914 435 SLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLA 475 (549)
Q Consensus 435 pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~d~~v 475 (549)
|+++|+|+++||+++++++++|+|+++++++||.+|.|+++
T Consensus 240 ~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 240 PLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 99999999999999999999999999999999999999863
No 6
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.6e-32 Score=279.25 Aligned_cols=387 Identities=18% Similarity=0.218 Sum_probs=309.1
Q ss_pred HHhhhccccccccccCCChhhhhhhHHHHHHHHHHHHHHHHHHHH--------hhCCChh----hHHHHhhhhhHHHHhc
Q 008914 75 FSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYAN--------LAKLDPQ----YGLYTSVIPPLIYALM 142 (549)
Q Consensus 75 ~~~l~~~~P~~~wl~~y~~~~l~~DiiAGltv~~~~iPq~~aya~--------laglpp~----~gLyss~i~~liy~lf 142 (549)
++.++++|...| +.+++|+|++||+|+++ +|+|-. -+|+|.. ....+++++++.++++
T Consensus 3 ~~~~~~~F~l~~-----~~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~ 72 (436)
T COG2252 3 KGDLDRFFKLKE-----HGTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLY 72 (436)
T ss_pred hhHHHHHhCccc-----cCchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 455777777766 77889999999999998 555543 2677754 3455688999999999
Q ss_pred cCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccchhHHHHHHHHHHH
Q 008914 143 GSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGF-LVDFLSHAAIVGFMAGAAI 221 (549)
Q Consensus 143 G~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg~-l~~fip~~Vi~Gf~~gigl 221 (549)
.+.|......++.++.+..+++.+++-+ ||.++.+.|++|+++++++++++++ ++|.+|+++..|..+|+|+
T Consensus 73 An~P~alapgmglnAfFaftvv~~~gi~-------wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGl 145 (436)
T COG2252 73 ANLPIALAPGMGLNAFFAFTVVLGMGLS-------WQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGL 145 (436)
T ss_pred HcCchhhcchhhHHHHHHHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999998888999999999999998743 9999999999999999999999976 8999999999999999999
Q ss_pred HHHHHhhhhhhCccccCCCccHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHH
Q 008914 222 VIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVIL 301 (549)
Q Consensus 222 ~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~ 301 (549)
+|..-.++ -.|+-. .++. ....+++ .+.+.++++++.+++...... +|.+. +.+++++.
T Consensus 146 Fia~IgL~-~~Givv-~~~~--------tlv~LG~--~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~ 204 (436)
T COG2252 146 FIALIGLK-NAGIVV-ANPA--------TLVALGD--FTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILV 204 (436)
T ss_pred HHHHHHHh-hCCeEE-ecCc--------ceEEeec--CCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHH
Confidence 99988887 445521 1111 2233444 555666666666655554432 45554 67889999
Q ss_pred HHHHHHHhccCCCceeEeeecccCCCCCcccccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC------Ccc
Q 008914 302 STLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTG-PHLGQTAKIGLISAVVALTEAIAVGRSFASIKG------YHL 374 (549)
Q Consensus 302 ~t~i~~~~~~~~~~v~~vg~ip~glp~~~~p~~~~~~-~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g------~~~ 374 (549)
.+.+++..+.........+..|.-. +.+.++|+.. ......++..+...++.++|++++..+.+++.| +..
T Consensus 205 ~t~~g~~~g~~~~~~~~~~~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~ 282 (436)
T COG2252 205 TTILGIILGIDVHFGGLVGAPPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMP 282 (436)
T ss_pred HHHHHHHhcccccccccccCCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCcc
Confidence 9999999875433222233333222 2233455543 334556677788999999999999988887643 235
Q ss_pred CCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCCcccchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhh
Q 008914 375 DGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALP 454 (549)
Q Consensus 375 d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~ 454 (549)
|.+|.+.+++++.++|+++|+.|++ +|-+|+...+.|+||+++.++.++++++. +|++|+...+|..+.++++++++.
T Consensus 283 ~~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~ 360 (436)
T COG2252 283 RIGKALLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGA 360 (436)
T ss_pred ccchHHHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHH
Confidence 7899999999999999999999876 79999999999999999999999999999 599999999999999999999999
Q ss_pred hcCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008914 455 GLIDINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAATVDMLFYFQDRKS 508 (549)
Q Consensus 455 ~li~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~~~~Gi~~gv~~sl~~~~~~~s 508 (549)
.|+ ..+.++||.|+...+.+|++.+++.+.+.+..|+.++++.|..-+-
T Consensus 361 lM~-----~~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i~k~ 409 (436)
T COG2252 361 LML-----SSVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVILKV 409 (436)
T ss_pred HHH-----hhhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 998 6788999999999999999999999999999999999888876443
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=7.3e-27 Score=248.46 Aligned_cols=321 Identities=17% Similarity=0.162 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHhhCCCh-------hhHHHHhhhhhHHHH----hccCCCccccchhHHHHHHHHHHHHhhcCCCCChH
Q 008914 107 ASLSIPQSIGYANLAKLDP-------QYGLYTSVIPPLIYA----LMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPV 175 (549)
Q Consensus 107 ~~~~iPq~~aya~laglpp-------~~gLyss~i~~liy~----lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~ 175 (549)
+.+.+|.-++-+ .|+|+ +..+.++.+++++.. .+|+...+..||.......+.....+
T Consensus 11 ~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~--------- 79 (406)
T TIGR03173 11 GAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG--------- 79 (406)
T ss_pred HHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh---------
Confidence 456667666543 58887 578889999999997 67899999999966443322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHHhcc
Q 008914 176 AYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLH 255 (549)
Q Consensus 176 ~~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~ 255 (549)
..++.+..+.+++|++++++|. +++++.|++|+.|+..++..+|+.+...++++..|.... .+
T Consensus 80 ~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~----------------~~ 142 (406)
T TIGR03173 80 GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGA----------------PD 142 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCc----------------cc
Confidence 2378899999999999999994 789999999998888888999999998888877553210 01
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeeccc-CCCC---Ccc
Q 008914 256 HSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKG-GLNP---SSA 331 (549)
Q Consensus 256 ~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~-glp~---~~~ 331 (549)
. .++.+..+++.+++++++.+++.|+..| .++.++++++++++++.++..+. ..+++.|. .+|. +..
T Consensus 143 ~--~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~~--~~i~~~~~~~~P~~~~~~~ 213 (406)
T TIGR03173 143 F--GSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVDF--SGVAEAPWFALPTPFHFGA 213 (406)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCCc--hhhccCCeeeCCCCCcCCC
Confidence 1 3455667787777777666554444322 23789999999999999875321 12222221 1221 334
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccC---CchHHHHHHHHHhHhhhccccccccccch-hhh
Q 008914 332 HQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLD---GNKEMVAMGFMNIVGSLTSCYVATGSFSR-TAV 407 (549)
Q Consensus 332 p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d---~nqEL~a~G~aNi~~~lfg~~p~~~s~sr-S~v 407 (549)
|++ +... +...+.+++++++|+++..++.++..|++.| .|||+.++|++|+++++||++|+++ ++| +++
T Consensus 214 P~f--~~~~----~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~ 286 (406)
T TIGR03173 214 PTF--DLVA----ILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGL 286 (406)
T ss_pred Cee--CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc-hhhhHHH
Confidence 443 3322 2334567899999999999999998887765 4799999999999999999999886 566 568
Q ss_pred hhhcCCcccchhHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCchh
Q 008914 408 NFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLD 472 (549)
Q Consensus 408 ~~~~GarT~ls~iv~a~~~ll~ll~--l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~d 472 (549)
+..+|+|||++++++|++++++.++ ++++++++|.++++++++ +.++++....++.++|.++.|
T Consensus 287 ~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~~~~ 352 (406)
T TIGR03173 287 VQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVDFDR 352 (406)
T ss_pred HHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcccC
Confidence 8889999999999999998888766 899999999999999877 489999888888887766553
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.95 E-value=2.7e-25 Score=236.52 Aligned_cols=326 Identities=15% Similarity=0.140 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHHhhCCCh-------hhHHHHhhhhhHHHHhccCCC---ccccchh-HHHHHHHHHHHHhhcCCCCCh
Q 008914 106 LASLSIPQSIGYANLAKLDP-------QYGLYTSVIPPLIYALMGSSR---EIAIGPV-AVVSMLLSALMQNVQDPAADP 174 (549)
Q Consensus 106 v~~~~iPq~~aya~laglpp-------~~gLyss~i~~liy~lfG~s~---~~~~gp~-a~~sl~~~~~v~~~~~~~~~~ 174 (549)
.+.+.+|.-++-+. +++ +..+..+.+++++.++.++.+ ....|+. +..+..+. .....
T Consensus 20 ~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~---~~~~~----- 88 (415)
T TIGR00801 20 GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIA---IGSGL----- 88 (415)
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHH---HHhcc-----
Confidence 45667777777655 444 367888999999999988877 5556665 44433322 22211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hh--hhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHH
Q 008914 175 VAYRKLVFTVTFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSV 250 (549)
Q Consensus 175 ~~~~~~~~~~~~l~Gi~~lllg~l--rl--g~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~ 250 (549)
.++.+....+.+|+++++++.+ |+ +++.+++|+.|...++.++|+.++..+++++.|........+
T Consensus 89 --~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~-------- 158 (415)
T TIGR00801 89 --GIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSAT-------- 158 (415)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccc--------
Confidence 1678899999999999999985 44 467999999999999999999999999999877643111110
Q ss_pred HHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeecc-cCCCCC
Q 008914 251 FSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNPS 329 (549)
Q Consensus 251 ~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip-~glp~~ 329 (549)
. .++.++.+|+.+++++++.+++.|++-| .++.++++++++++++.++..+.. .+.+.| .++|.+
T Consensus 159 ---~----~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~aiLigiv~g~i~a~~lg~~~~~--~v~~~~~~~lP~~ 224 (415)
T TIGR00801 159 ---Y----GSLENLGVAFVVLALIILLNRFGKGFLK-----SISILIGILVGYILALFMGIVDFS--PVIDAPWFSLPTP 224 (415)
T ss_pred ---c----CchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHcCCccch--hhccCcccccCCc
Confidence 0 2456678888888877776655444322 237899999999999998753321 122222 134444
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccC----CchHHHHHHHHHhHhhhccccccccccchh
Q 008914 330 SAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLD----GNKEMVAMGFMNIVGSLTSCYVATGSFSRT 405 (549)
Q Consensus 330 ~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d----~nqEL~a~G~aNi~~~lfg~~p~~~s~srS 405 (549)
..|..+|+.. .+...+.+++++++|+++..++++++.|++.| .|||+.++|++|+++|+||++|++++..++
T Consensus 225 ~~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~ 300 (415)
T TIGR00801 225 FTFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNI 300 (415)
T ss_pred cCCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhh
Confidence 3332234433 34444678999999999999999999988664 479999999999999999999999999999
Q ss_pred hhhhhcCCcccchhHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCch
Q 008914 406 AVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKL 471 (549)
Q Consensus 406 ~v~~~~GarT~ls~iv~a~~~ll~ll~--l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~ 471 (549)
.++..+|++||.+.+++|++++++.++ ++++++++|.++++++++ +.+++++...++.+++.+..
T Consensus 301 g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~ 367 (415)
T TIGR00801 301 GVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLD 367 (415)
T ss_pred eeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccC
Confidence 999999999999999999999999988 999999999999999999 68999988899999876543
No 9
>PRK10720 uracil transporter; Provisional
Probab=99.94 E-value=2.6e-24 Score=229.15 Aligned_cols=357 Identities=14% Similarity=0.105 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccC-CCccccchh-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 008914 107 ASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGS-SREIAIGPV-AVVSMLLSALMQNVQDPAADPVAYRKLVFTV 184 (549)
Q Consensus 107 ~~~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~-s~~~~~gp~-a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (549)
+.+.+|.-+ |+++...+..|.+++++..+.++ .-.+..||. +..+.+.... .. .|+.+..+
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~~---------~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PL---------GYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--Hc---------cHHHHHHH
Confidence 455666633 89999999999999999998775 445556774 2222222211 11 27889999
Q ss_pred HHHHHHHHHHHhhh--hh--hhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHHhcccCCcc
Q 008914 185 TFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWY 260 (549)
Q Consensus 185 ~~l~Gi~~lllg~l--rl--g~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (549)
.+++|+++++++++ |+ +++.+++|+.|+..+++.+|+.++-..++. .|... ... +. .+
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~--~~~-------------~~--~~ 154 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLP--AEG-------------QT--PD 154 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccC--CCC-------------cc--cc
Confidence 99999999999997 34 468999999999999999999998666642 23211 000 11 45
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeee-cccCCCCCcccccCCChh
Q 008914 261 PLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKH-IKGGLNPSSAHQLQLTGP 339 (549)
Q Consensus 261 ~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~-ip~glp~~~~p~~~~~~~ 339 (549)
+.++.+++++++++++..+..|++.|. .+.++++++++++++.++..+ ...+++ .+.++|.+..|++ +..
T Consensus 155 ~~~~~lalv~l~iil~~~~~~kg~~~~-----~~iLigIvvG~ila~~lG~~d--~~~v~~a~~~~lP~~~~P~f--d~~ 225 (428)
T PRK10720 155 SKTIIISMVTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGMVD--TTPIIEAHWFALPTFYTPRF--EWF 225 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHH-----hHHHHHHHHHHHHHHHhcCCC--HHHhhcCccccCCCCCCCcC--cHH
Confidence 667788888887777655444554332 256999999999999987532 222332 2234555555644 443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc----cCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCCcc
Q 008914 340 HLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQT 415 (549)
Q Consensus 340 ~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~----~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT 415 (549)
.+...++ .+++.++|++++..+.++..+++ .|.|||+.++|++|+++|+||++|++++..+..+...+|.++
T Consensus 226 ~il~l~~----~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~s 301 (428)
T PRK10720 226 AILTILP----AALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYS 301 (428)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccch
Confidence 3444433 45566778888777776655543 478999999999999999999999998777777777788888
Q ss_pred cchhHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhc--CCch---hHHHHHH----------
Q 008914 416 VVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYK--VDKL---DFLACIG---------- 478 (549)
Q Consensus 416 ~ls~iv~a~~~ll~ll~--l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k--~~~~---d~~v~~~---------- 478 (549)
|....+++++++++.++ ++++++.||.++++|+.+ +.+++++...++.+|+ .|.. +.++..+
T Consensus 302 r~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~ 380 (428)
T PRK10720 302 TWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK 380 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHH
Confidence 88777777777776643 899999999999999999 7999999999999964 3322 1232211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008914 479 -AFLGVLFASVEIGLLAATVDMLFYFQDRKSTITG 512 (549)
Q Consensus 479 -t~~~~~~~~~~~Gi~~gv~~sl~~~~~~~s~~~~ 512 (549)
++..+...|+..|..+|++++++...||+-+..+
T Consensus 381 ~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~~ 415 (428)
T PRK10720 381 VNIGAAELKGMALATIVGIGLSLIFKLISKLRPEE 415 (428)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhcccccccCCc
Confidence 2222333578889999999999999888776544
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=2.8e-25 Score=181.11 Aligned_cols=83 Identities=52% Similarity=0.981 Sum_probs=80.4
Q ss_pred ccccccccCCCh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHH
Q 008914 82 FPILNWGRNYKA-SKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLL 160 (549)
Q Consensus 82 ~P~~~wl~~y~~-~~l~~DiiAGltv~~~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~ 160 (549)
||+++|+++|++ +++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+++++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999996 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008914 161 SALM 164 (549)
Q Consensus 161 ~~~v 164 (549)
++.+
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.90 E-value=4.5e-21 Score=204.27 Aligned_cols=327 Identities=14% Similarity=0.147 Sum_probs=217.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHH-hccCCCccccchhHHHHHHHHHHHHhhcCCCCCh
Q 008914 96 FKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYA-LMGSSREIAIGPVAVVSMLLSALMQNVQDPAADP 174 (549)
Q Consensus 96 l~~DiiAGltv~~~~iPq~~aya~laglpp~~gLyss~i~~liy~-lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~ 174 (549)
+..+++.|+.-.+.+.--.++...+-|+++...+.+|.+++++.. .+|+.-....|+.......+.... +.. ..++
T Consensus 29 ~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~-~~~--~~~~ 105 (429)
T TIGR03616 29 AAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAAT-GYN--GQGT 105 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHH-hhc--ccCC
Confidence 467888888877644333333334457999999999999999997 578877778888655433222211 111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHH
Q 008914 175 VAYRKLVFTVTFFAGVFQSVFGLFRL----GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSV 250 (549)
Q Consensus 175 ~~~~~~~~~~~~l~Gi~~lllg~lrl----g~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~ 250 (549)
+.+++.+..+++++|++++++|++++ +++.|++|+-|..-.+..+|+.++...++...|- +
T Consensus 106 ~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-------~-------- 170 (429)
T TIGR03616 106 NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-------G-------- 170 (429)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-------c--------
Confidence 23477888999999999999999876 5578889988888888888888886555532110 0
Q ss_pred HHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHh----ccC-CCceeEe-eeccc
Q 008914 251 FSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLT----KAD-KHGVKIV-KHIKG 324 (549)
Q Consensus 251 ~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~----~~~-~~~v~~v-g~ip~ 324 (549)
. -+|. ++.+++.+++...+.|++-|. .+.++++++++++++.+ +.. ..+.+.+ +.-..
T Consensus 171 ---~----~~~~----al~tl~~i~l~~l~~~~~l~~-----~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~ 234 (429)
T TIGR03616 171 ---F----DSWM----AVLTILCIGAVAVFTRGMLQR-----LLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWF 234 (429)
T ss_pred ---c----ccHH----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccc
Confidence 0 1222 222222222222233333222 16799999999988764 211 1222222 22223
Q ss_pred CCCCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCC--chHHHHHHHHHhHhhhcccccccccc
Q 008914 325 GLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDG--NKEMVAMGFMNIVGSLTSCYVATGSF 402 (549)
Q Consensus 325 glp~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~--nqEL~a~G~aNi~~~lfg~~p~~~s~ 402 (549)
++|++..|++ +...+ ...+..+++.++|+++..++.++..+++.|+ |||+.++|++|+++|++|+.|.+...
T Consensus 235 ~lP~~~~p~f--~~~~i----l~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~ 308 (429)
T TIGR03616 235 GLPNFHTPVF--NANAM----LLIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYA 308 (429)
T ss_pred cCCcCCCceE--cHHHH----HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCccee
Confidence 4555555543 33223 2334557888999999999999888877776 89999999999999999999977665
Q ss_pred chhhhhhhcCCcccchhHHHHHHHHHHHHHhHH----HHHhhhHHHHHHHHHHHhhhcCCHHHHHHH
Q 008914 403 SRTAVNFSAGCQTVVSNIVMAITVLLSLELFTS----LLYYTPIAILASIILSALPGLIDINEAINI 465 (549)
Q Consensus 403 srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~p----l~~~iP~avLa~ili~~~~~li~~~~~~~l 465 (549)
.+..+...+|..+|.....++++++++ .+.| ++..||.++++|+++ +.+++++..+++.+
T Consensus 309 en~g~i~~T~v~SR~v~~~a~~~lill--gl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 309 ENIGVMAVTKVYSTLVFVAAAVFAILL--GFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeeeeecCcchHHHHHHHHHHHHHH--HHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 555555556666666655555554443 4555 999999999999998 68999988888844
No 12
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.85 E-value=5.4e-19 Score=187.09 Aligned_cols=345 Identities=18% Similarity=0.121 Sum_probs=207.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh----hCC--C----hhhHHHHhhhhhHHHHh-ccCCCccccchhHHHHHHHHHHHH
Q 008914 97 KSDLMAGLTLASLSIPQSIGYANL----AKL--D----PQYGLYTSVIPPLIYAL-MGSSREIAIGPVAVVSMLLSALMQ 165 (549)
Q Consensus 97 ~~DiiAGltv~~~~iPq~~aya~l----agl--p----p~~gLyss~i~~liy~l-fG~s~~~~~gp~a~~sl~~~~~v~ 165 (549)
++++++|++..+.+.+-.+....+ .|+ + ....+..+.+++++.++ +|..-.+..||... .+.....+.
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~-~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFA-FIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GG-GHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchh-hhhhhhccc
Confidence 468899999887554433333332 122 1 24678889999999999 77766666677432 222222222
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHH
Q 008914 166 NVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVV 244 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg-~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~ 244 (549)
... .+....++.+..+.+++|++++++++++++ ++.+++|+.|..+++.++|+.+....++...|.....+ .
T Consensus 80 g~~---~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~--~-- 152 (389)
T PF00860_consen 80 GMA---ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPD--G-- 152 (389)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BT--T--
T ss_pred ccc---cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccccc--c--
Confidence 210 122344788999999999999999999985 79999999999999999999999999998887752111 0
Q ss_pred HHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeeccc
Q 008914 245 SVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKG 324 (549)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~ 324 (549)
... .++.....+..++++.+......+++.+. .+.++++++++++++..+..+.+-. + .
T Consensus 153 ---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ailigi~~g~i~~~~~g~~~~~~~-~----~ 211 (389)
T PF00860_consen 153 ---------LLV--GDGKNLGLAVLTLLFILLLSLFLKGFLRK-----GAILIGIIAGWIVAAILGVVDFSPS-V----S 211 (389)
T ss_dssp ----------B-----HHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTTSSH--H----H
T ss_pred ---------ccc--ccccccccccccchhhhhhhhhhhhhccc-----ccchhhhhhhhhhhhcccccccCcc-c----c
Confidence 000 23344445555555555544443333332 2678999999999998873222110 1 1
Q ss_pred CCCCCcccc-cCCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc----cCCchHHHHHHHHHhHhhhcccccc
Q 008914 325 GLNPSSAHQ-LQLTGP-HLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVA 398 (549)
Q Consensus 325 glp~~~~p~-~~~~~~-~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~----~d~nqEL~a~G~aNi~~~lfg~~p~ 398 (549)
.-|...+|+ ++|..+ .....+...+...++.++|+++...+.++..|++ .+.||-+.++|++|+++++||+.|.
T Consensus 212 ~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~ 291 (389)
T PF00860_consen 212 SAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPT 291 (389)
T ss_dssp HS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---E
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCC
Confidence 112222221 112111 2234455556678888999998888877765544 4468999999999999999999998
Q ss_pred ccccchhhhhhhcCCcccchhHHHHHHHHHHHH--HhHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCch
Q 008914 399 TGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLE--LFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKL 471 (549)
Q Consensus 399 ~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll--~l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~ 471 (549)
+.+..+...-..+|.++|.+++.++++.+++.+ +++|++..||.++++|..++ .++++-...++.+.+.+..
T Consensus 292 t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 292 TTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp EE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-
T ss_pred ccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccC
Confidence 866666666666778899999988888777654 48999999999998877655 2333323555665554444
No 13
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.81 E-value=5.1e-17 Score=172.35 Aligned_cols=335 Identities=14% Similarity=0.120 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHhhCCChh-------hHHHHhhhhhHHHHhccCCCccccchhHHH-HHHHHHHHHhhcCCCCChHHH
Q 008914 106 LASLSIPQSIGYANLAKLDPQ-------YGLYTSVIPPLIYALMGSSREIAIGPVAVV-SMLLSALMQNVQDPAADPVAY 177 (549)
Q Consensus 106 v~~~~iPq~~aya~laglpp~-------~gLyss~i~~liy~lfG~s~~~~~gp~a~~-sl~~~~~v~~~~~~~~~~~~~ 177 (549)
.+.+.+|.-++=+ .|+++. ..+..|.+.+++=+++|+.-.+..||.... ..+..-.... ..........
T Consensus 23 ~~~i~vPliva~a--~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~-~~~g~~~~~~ 99 (433)
T PRK11412 23 CNTVVVPPTLLSA--FQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGE-ASRGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcc-cccCccHHHH
Confidence 3456677666543 677775 567788899999999999999999996554 2222211111 0000001111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHHhccc
Q 008914 178 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 256 (549)
Q Consensus 178 ~~~~~~~~~l~Gi~~lllg~lr-lg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~ 256 (549)
.+......+++|++++++|..+ ++++.|++|+-|..-++.=+|+.++-..++++.|.+.. ...+ .++
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~-~~~~-----------~~~ 167 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFG-IADP-----------NGK 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCcc-Cccc-----------ccc
Confidence 2223346889999999999998 69999999999999999999999999999988886210 0011 011
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHH-HhccCCCceeEeeecc-cCCCCCccccc
Q 008914 257 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVY-LTKADKHGVKIVKHIK-GGLNPSSAHQL 334 (549)
Q Consensus 257 ~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~-~~~~~~~~v~~vg~ip-~glp~~~~p~~ 334 (549)
++.....+++.++.+++....+.|++-|. .+.+++++++++++. ..+.|.. .+++.+ ..+| +..|.
T Consensus 168 --~~~~~~~~a~~~l~~il~~~~~~~g~~~~-----~svLiGiv~G~v~a~~~~g~d~~---~v~~a~w~~~p-fG~P~- 235 (433)
T PRK11412 168 --IQLPPFGLSVAVMCLVLAMIIFLPQRIAR-----YSLLVGTIVGWILWAFCFPSSHS---LSGELHWQWFP-LGSGG- 235 (433)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHhCCCcc---hhccCCceeec-CCCCC-
Confidence 33445566777777666666555554433 267899999998753 5554222 222222 1122 23342
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc----cCCchHHHHHHHHHhHhhhccccccccccchhhhhhh
Q 008914 335 QLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS 410 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~----~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~ 410 (549)
+|++.. +...+..+++...|+++.-++.++..+++ .+.+|-+.++|++|+++|+||++|.+....+..+-..
T Consensus 236 ~F~~~~----il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~ 311 (433)
T PRK11412 236 ALEPGI----ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQ 311 (433)
T ss_pred ccCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhh
Confidence 244433 33344566777788877777777665553 3568899999999999999999999988888889999
Q ss_pred cCCcccchhHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCchh
Q 008914 411 AGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLD 472 (549)
Q Consensus 411 ~GarT~ls~iv~a~~~ll~ll~--l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~d 472 (549)
+|.++|.....+|++++++-++ ++.++..||.+|++|+.++ .++++--..++.+.|.+..+
T Consensus 312 TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~~ 374 (433)
T PRK11412 312 TGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITFTA 374 (433)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999888766 7789999999999999887 77777667777776665433
No 14
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.80 E-value=1e-17 Score=175.39 Aligned_cols=309 Identities=16% Similarity=0.113 Sum_probs=223.1
Q ss_pred hHHHHhhhhhHHHHhc----cCCCccccch-hHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008914 127 YGLYTSVIPPLIYALM----GSSREIAIGP-VAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG 201 (549)
Q Consensus 127 ~gLyss~i~~liy~lf----G~s~~~~~gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg 201 (549)
+.|.+|.++++++.+- |..-....|. ++..+.+.. +.++.+ .....+....+.+|++.++++.+--.
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~-~~~~~g-------~~~~~~~G~ii~ag~~~~li~~~~~~ 128 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIA-IGGTTG-------DGIAALLGGIIAAGLVYFLISPIVKI 128 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHH-HHhccC-------CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999982 2233334454 333333332 222222 11466788999999999999977322
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhh
Q 008914 202 FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIG 281 (549)
Q Consensus 202 ~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~ 281 (549)
|+.|++|+-|..-++.-+|+.++-..++.+.|.....++.++ .+..++.+++.++++.++..++.
T Consensus 129 ~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~---------------~~~~~l~la~~tl~~il~~~~f~ 193 (451)
T COG2233 129 RLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDF---------------GSLENLGLALVTLLIILLINRFG 193 (451)
T ss_pred HHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCccc---------------CchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887532222221 45667788888888877766665
Q ss_pred hccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeeccc-CCCCCcccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 008914 282 RRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKG-GLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAI 360 (549)
Q Consensus 282 ~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~-glp~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~ 360 (549)
|.+-|. .+.++++++|+++++..+..+. +.+.+-|- ++|.|..+...|++..+..+ +.++++.+.|++
T Consensus 194 ~g~~~~-----i~ILiGlv~G~~la~~~G~vdf--~~v~~a~w~~~P~~~~fg~~F~~~ail~m----~~v~iV~~~E~~ 262 (451)
T COG2233 194 KGFLRR-----IPILIGLVVGYLLALFMGMVDF--SGVAEAPWFALPTPFYFGMAFDWGAILTM----LPVAIVTIVEHT 262 (451)
T ss_pred hhHHHH-----HHHHHHHHHHHHHHHHhCCcCc--cccccCceeeCCcccCCCeeecHHHHHHH----HHHHHHHHHHHh
Confidence 555432 2678999999999999884222 11222111 24444333224555444433 445777888888
Q ss_pred HHHHHHhhhhCCcc----CCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCCcccchhHHHHHHHHHHHHH--hH
Q 008914 361 AVGRSFASIKGYHL----DGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FT 434 (549)
Q Consensus 361 ~~~~~~a~~~g~~~----d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~--l~ 434 (549)
+.-++.++..|++. +.+|.++++|++++++++||++|.|+.-.+..+-..+|.+||.....+|++.++.-++ ++
T Consensus 263 G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~ 342 (451)
T COG2233 263 GDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFG 342 (451)
T ss_pred hhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHH
Confidence 77777777666654 4578889999999999999999999988888899999999999999999988887765 88
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCc
Q 008914 435 SLLYYTPIAILASIILSALPGLIDINEAINIYKVDK 470 (549)
Q Consensus 435 pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~ 470 (549)
.++..||.+|++|+.++ .++++....++.+-|.+.
T Consensus 343 al~~sIP~pVlGGa~iv-mFG~Ia~sGir~l~~~~~ 377 (451)
T COG2233 343 ALIQSIPSPVLGGAMLV-LFGMIAASGIRILIRNKV 377 (451)
T ss_pred HHHHhCChhhhhHHHHH-HHHHHHHHHHHHHHhccc
Confidence 89999999999999876 888887777777665443
No 15
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.61 E-value=1.9e-12 Score=145.92 Aligned_cols=347 Identities=14% Similarity=0.111 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC------CChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCC
Q 008914 100 LMAGLTLASLSIPQSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAAD 173 (549)
Q Consensus 100 iiAGltv~~~~iPq~~aya~lag------lpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~ 173 (549)
+-|=+-+.+..+.-+++|+.+-+ +...=.|.|+.+++++|++||+.|-.++|+++.+.++...+..--. ..
T Consensus 372 laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~---~~ 448 (900)
T TIGR00834 372 LAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCE---SN 448 (900)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHh---hc
Confidence 33444555667777888887632 4555679999999999999999999999999998887665443322 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCC-CccHH--------
Q 008914 174 PVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTN-KTDVV-------- 244 (549)
Q Consensus 174 ~~~~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~-~~~~~-------- 244 (549)
...|+...+.+.++++++.++++.+...++++|+.+-.-..|-.=++++-+...++.+...-.... ..++.
T Consensus 449 ~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~ 528 (900)
T TIGR00834 449 GLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPK 528 (900)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 235788888999999999999999999999999999999999999999999888887754321000 00000
Q ss_pred ---HHH-----------HHH-----HHhcccCCcchHHHHHHHHHHHHHHHHHHhhhc--cccc--cccccchhHHHHHH
Q 008914 245 ---SVL-----------GSV-----FSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRR--NKKL--FWLPAIAPLLSVIL 301 (549)
Q Consensus 245 ---~~~-----------~~~-----~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~--~~~~--~~~~~~~~Li~ii~ 301 (549)
... ... +....+ .-...+++.+.++.+.+..+.+++. +++. ..+.-.+..++|++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~--~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~ 606 (900)
T TIGR00834 529 PQGPSVSALLEKDCSKLGGTLGGNNCRFQPN--TALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILI 606 (900)
T ss_pred cccccccccccccccccccccccccccccch--HHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHH
Confidence 000 000 000011 2233445555555555555444211 1111 11344567889999
Q ss_pred HHHHHHHhcc-CCCceeEeeecccCCCCCcccc--------cC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008914 302 STLIVYLTKA-DKHGVKIVKHIKGGLNPSSAHQ--------LQ----LTGPHLGQTAKIGLISAVVALTEAIAVGRSFAS 368 (549)
Q Consensus 302 ~t~i~~~~~~-~~~~v~~vg~ip~glp~~~~p~--------~~----~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~ 368 (549)
.+.+.|.++. +... -.+|+++. |..|+ +. +.+.....++..++.+++.-|+|+-.++....+
T Consensus 607 ~t~v~~~~~~v~~~k----l~Vp~~f~-pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~ 681 (900)
T TIGR00834 607 MVLVDIFIGDTYTQK----LSVPSGLK-VTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSK 681 (900)
T ss_pred HHHHHHHhccCcccc----cCCCCCcC-CCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 9999997652 1111 12455554 22221 11 122234566778888999999999777665554
Q ss_pred hhCC---ccCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcC-----------------C-cccchhHHHHHHHH
Q 008914 369 IKGY---HLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAG-----------------C-QTVVSNIVMAITVL 427 (549)
Q Consensus 369 ~~g~---~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~G-----------------a-rT~ls~iv~a~~~l 427 (549)
+.++ ..-.+-++.-+|+.|.++|++|--+.+++..||..+.++= + .+|+++++.++++.
T Consensus 682 ~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLig 761 (900)
T TIGR00834 682 KERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVG 761 (900)
T ss_pred ccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHH
Confidence 4321 2235789999999999999999988999988887776531 1 37999999999887
Q ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHhhhcC
Q 008914 428 LSLELFTSLLYYTPIAILASIILSALPGLI 457 (549)
Q Consensus 428 l~ll~l~pl~~~iP~avLa~ili~~~~~li 457 (549)
+.+ +..|++.+||++||.|+.++.|+.-+
T Consensus 762 lsv-~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 762 LSI-LMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred HHH-HHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 765 68999999999999999999998754
No 16
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.59 E-value=4.6e-12 Score=131.75 Aligned_cols=340 Identities=16% Similarity=0.165 Sum_probs=204.3
Q ss_pred hhHHHHHHHHHHHH--HHHHHH--HHhhCCChh---hH----HHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHh
Q 008914 98 SDLMAGLTLASLSI--PQSIGY--ANLAKLDPQ---YG----LYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQN 166 (549)
Q Consensus 98 ~DiiAGltv~~~~i--Pq~~ay--a~laglpp~---~g----Lyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~ 166 (549)
.-+.||+...++.. |-.+=+ +.-.|+++. .. ..++.+.+++.++.-+ -.++.+....-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~r-~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRFK-TPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeecCchHHHHHHHhcCC
Confidence 45668887776433 222222 233677765 22 2345556666666664 455566665555555443333
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHH
Q 008914 167 VQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lr-lg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~ 245 (549)
.. +..+..+-+++|++.+++|+.+ ++|+++++|+++..|.++|+.+.....-++.+
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~-------------- 157 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAAL-------------- 157 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 22 5677888999999999999999 49999999999999999999887753322211
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeecccC
Q 008914 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGG 325 (549)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~g 325 (549)
.+ .+ .++...++..++.|++ .|+ ++.++++++++++++..+..+.+ .+...
T Consensus 158 ---------~~---~p---ll~~~mll~~l~~~r~---~Pr------~avl~aLlvG~iva~~~G~~~~~-----~~~~~ 208 (395)
T TIGR00843 158 ---------DG---LF---LICFSMLLCWLASKAF---APR------YAMIAALICGIAFSFALGDMNPT-----DLDFK 208 (395)
T ss_pred ---------HH---hH---HHHHHHHHHHHHHHHh---cch------HHHHHHHHHHHHHHHHhcCCCcc-----ccccc
Confidence 11 11 1222223233333222 122 37789999999999887642211 11111
Q ss_pred C--CCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccc------
Q 008914 326 L--NPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYV------ 397 (549)
Q Consensus 326 l--p~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p------ 397 (549)
+ |.+..|++++. ..+..++-..++.+.....-+-+..+.+||+.+.|+-+.+.|++|+++++|||++
T Consensus 209 l~~p~~~~P~fs~~-----a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaai 283 (395)
T TIGR00843 209 IALPQFIAPDFSFA-----HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAI 283 (395)
T ss_pred cccceeeCCCCCHH-----HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHH
Confidence 2 23345655432 2233333333333333322233344568999999999999999999999999999
Q ss_pred cccccchhhhhhhcCCcccchhHHHHHHHHHHHHH---hHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCchhHH
Q 008914 398 ATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFL 474 (549)
Q Consensus 398 ~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~---l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~d~~ 474 (549)
.++-+.....+.+ ++|+-.+++..|++.++.-++ +..++..+|.+..+++-=.+.++-+. ..+..-.+ +..+..
T Consensus 284 taAic~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~-~~l~~a~~-~~~~r~ 360 (395)
T TIGR00843 284 TAAICMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA-GNIKIALH-EDQERD 360 (395)
T ss_pred hHHHhcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHhc-CcchhH
Confidence 3333333344444 889999999999999888776 45688999998877764333333331 22333332 333455
Q ss_pred HHHHHHHHHH----HHH---HHHHHHHHHHH
Q 008914 475 ACIGAFLGVL----FAS---VEIGLLAATVD 498 (549)
Q Consensus 475 v~~~t~~~~~----~~~---~~~Gi~~gv~~ 498 (549)
..++||+.|. +.| --.|+++|+..
T Consensus 361 ~a~~tflvtaSg~~~~gigaafWgl~~G~~~ 391 (395)
T TIGR00843 361 AALIAFLATASGLHFLGIGSAFWGLCAGGLA 391 (395)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 5667776664 222 34677777544
No 17
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.53 E-value=5.8e-11 Score=130.89 Aligned_cols=336 Identities=13% Similarity=0.131 Sum_probs=225.7
Q ss_pred HHHHHHHhhC------CChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 008914 113 QSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTF 186 (549)
Q Consensus 113 q~~aya~lag------lpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 186 (549)
-.++|+.+-| +...=.|.++.+++++|++||+-|-.++|+++...++-..+..--. +++..|+...+.+.+
T Consensus 376 P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~---~~~~dyl~~r~wVgl 452 (876)
T KOG1172|consen 376 PAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCK---DNGLDYLAFRAWVGL 452 (876)
T ss_pred hHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHh---hCCCchhhHHHHHHH
Confidence 3566665522 3344568999999999999999999999999988877554433221 223567888889999
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCC-Ccc--H---HH-HHHHHHHhc----c
Q 008914 187 FAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTN-KTD--V---VS-VLGSVFSSL----H 255 (549)
Q Consensus 187 l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~-~~~--~---~~-~~~~~~~~l----~ 255 (549)
++.++.+++..+....+++|+.+..-..|-.=|+++.+...++.+.++..... ..+ . .. ... -..+. .
T Consensus 453 W~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 531 (876)
T KOG1172|consen 453 WTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGP-ECESVSGTLL 531 (876)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccc-cccccCcccC
Confidence 99999999999999999999999999999999999999999987766532100 000 0 00 000 00000 0
Q ss_pred cCCcchHHHHHHHH----HHHHHHHHHHhhh--cccc--ccccccchhHHHHHHHHHHHHHhcc-CCCceeEeeecccCC
Q 008914 256 HSYWYPLNFVLGCS----FLIFLLIARFIGR--RNKK--LFWLPAIAPLLSVILSTLIVYLTKA-DKHGVKIVKHIKGGL 326 (549)
Q Consensus 256 ~~~~~~~~~~ig~~----~l~~ll~~~~~~~--~~~~--~~~~~~~~~Li~ii~~t~i~~~~~~-~~~~v~~vg~ip~gl 326 (549)
...+...+.+++++ ++.+-+..|.+++ .+++ ..++.-.+..++|++.+.+.+..+. ...++. +|.++
T Consensus 532 ~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp~~~ 607 (876)
T KOG1172|consen 532 GSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VPSVF 607 (876)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cCcCC
Confidence 00122333333333 3333333332211 0111 1123344667888999999988752 222222 23333
Q ss_pred CCCc--------ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC---ccCCchHHHHHHHHHhHhhhccc
Q 008914 327 NPSS--------AHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY---HLDGNKEMVAMGFMNIVGSLTSC 395 (549)
Q Consensus 327 p~~~--------~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~---~~d~nqEL~a~G~aNi~~~lfg~ 395 (549)
|++. .|..+..+..+..++..++.+++.-|+|+-.++....++..+ ..-.+-+|+-+|+.|+++|++|=
T Consensus 608 ~~t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGL 687 (876)
T KOG1172|consen 608 PPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGL 687 (876)
T ss_pred CCCCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCC
Confidence 3221 111123344566777888899999999998777665544332 23346799999999999999999
Q ss_pred cccccccchhhhhhhcC-----------------C-cccchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcC
Q 008914 396 YVATGSFSRTAVNFSAG-----------------C-QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLI 457 (549)
Q Consensus 396 ~p~~~s~srS~v~~~~G-----------------a-rT~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li 457 (549)
-+.+|+..+|-.+.++= + ..|++|++.++++.+.. ++.|++..||++||.|+-.+.|+.=+
T Consensus 688 Pw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls~-~~~pvL~~IP~~VL~GvFlYMgv~SL 766 (876)
T KOG1172|consen 688 PWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLSV-LLLPVLKLIPMPVLYGVFLYMGVSSL 766 (876)
T ss_pred CccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHhhccC
Confidence 89999999998877642 2 36899999999999554 89999999999999999999998754
No 18
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.35 E-value=5.4e-09 Score=107.20 Aligned_cols=342 Identities=17% Similarity=0.175 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHHH--HHHHHH--HHhhCCChh---hHHHH----hhhhhHHHHhccCCCccccchhHHHHHHHHHHHHh
Q 008914 98 SDLMAGLTLASLSI--PQSIGY--ANLAKLDPQ---YGLYT----SVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQN 166 (549)
Q Consensus 98 ~DiiAGltv~~~~i--Pq~~ay--a~laglpp~---~gLys----s~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~ 166 (549)
..+.+|+...++.. |-.+-+ +.-+|+.+. ..+.+ ..+.++.+++.-+-|....=.+.-.+++. +...+
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~-~~~~~ 84 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLA-TSLPG 84 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHH-HhccC
Confidence 34566766665432 222222 334677765 22332 33455666666665554333333344443 34443
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHH
Q 008914 167 VQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRL-GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrl-g~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~ 245 (549)
+. +..+..+=+++|++.++.|+.++ +++++.||.++..+.++|+-+-....-++
T Consensus 85 ~~---------~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~---------------- 139 (378)
T PF03594_consen 85 YS---------FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFT---------------- 139 (378)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 32 56677788899999999999995 99999999999999999988776533222
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeecccC
Q 008914 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGG 325 (549)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~g 325 (549)
.+.+ ...+ ....++..++.|++.+|+ +.+.+++.+..+.+..+.-.. . .++..
T Consensus 140 -------a~~~-----~P~l-~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~~--~---~~~~~ 192 (378)
T PF03594_consen 140 -------ALQA-----DPLL-VGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLHP--S---ALQLS 192 (378)
T ss_pred -------HHHh-----HHHH-HHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCCc--c---ccccc
Confidence 2111 1112 222333334445555554 456677778777776543211 1 11112
Q ss_pred C--CCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccccccccc
Q 008914 326 L--NPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFS 403 (549)
Q Consensus 326 l--p~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~s 403 (549)
+ |.+..|++++ ...+.+++-+.++.+.....-+-+.-+.+||+.+.|+-+..-|++|++.++|||++.+-+--
T Consensus 193 ~~~p~~~~P~Fs~-----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAai 267 (378)
T PF03594_consen 193 LAHPVFTTPEFSW-----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAI 267 (378)
T ss_pred cceeEEECCcccH-----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHH
Confidence 2 3344565543 33444555566666665555555555679999999999999999999999999998775544
Q ss_pred hhhhhhh--cC---CcccchhHHHHHHHHHHHHH---hHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCchhHHH
Q 008914 404 RTAVNFS--AG---CQTVVSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLA 475 (549)
Q Consensus 404 rS~v~~~--~G---arT~ls~iv~a~~~ll~ll~---l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~d~~v 475 (549)
-.++... ++ .|-=.+++.+|+..++.-++ +..++.-.|.+..+.+-=.+.++-+ -+.+..-++.++ +..-
T Consensus 268 taAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l-~~sl~~A~~~~~-~r~a 345 (378)
T PF03594_consen 268 TAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTL-GGSLQTAFSDEK-YREA 345 (378)
T ss_pred HHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHhcCcc-hhHH
Confidence 4444433 33 34457888888888887776 4567889998877765333333322 134455554332 3345
Q ss_pred HHHHHHHHH----HHH---HHHHHHHHHHHH
Q 008914 476 CIGAFLGVL----FAS---VEIGLLAATVDM 499 (549)
Q Consensus 476 ~~~t~~~~~----~~~---~~~Gi~~gv~~s 499 (549)
.++||+.+. +.| --.|+++|++..
T Consensus 346 AlvtFlvtaSGisl~gIgaafWgLv~G~~~~ 376 (378)
T PF03594_consen 346 ALVTFLVTASGISLLGIGAAFWGLVAGLLVH 376 (378)
T ss_pred HHHHHHHHHcCCCcccccHHHHHHHHHHHHH
Confidence 566666554 222 346777777654
No 19
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.17 E-value=1e-11 Score=133.27 Aligned_cols=348 Identities=14% Similarity=0.188 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhC------CChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHH
Q 008914 103 GLTLASLSIPQSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVA 176 (549)
Q Consensus 103 Gltv~~~~iPq~~aya~lag------lpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~ 176 (549)
=+-.....+.-+++|+.+-+ +...-.+.++.+.+++|++||+.|..++|+++.+.++......- .+ +...+
T Consensus 39 ~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~-~~--~~~~~ 115 (510)
T PF00955_consen 39 TLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKF-CK--SYGLD 115 (510)
T ss_dssp HHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC---------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc--ccccc
Confidence 34444566777888877632 44456688999999999999999999999999988775443321 11 12235
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCC-CccH---H--------
Q 008914 177 YRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTN-KTDV---V-------- 244 (549)
Q Consensus 177 ~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~-~~~~---~-------- 244 (549)
|+..-....+.++++.++++.+...++++|+.+..-..|..=+++..+...++.+..+-.... ..+. .
T Consensus 116 fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~~ 195 (510)
T PF00955_consen 116 FLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPPE 195 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 677778899999999999999999999999999999999999999999888887765521000 0000 0
Q ss_pred ---------------------HHHHHHHHhcccC----------CcchH----HHHHHHHHHHHHHHHHHhhh--ccccc
Q 008914 245 ---------------------SVLGSVFSSLHHS----------YWYPL----NFVLGCSFLIFLLIARFIGR--RNKKL 287 (549)
Q Consensus 245 ---------------------~~~~~~~~~l~~~----------~~~~~----~~~ig~~~l~~ll~~~~~~~--~~~~~ 287 (549)
....+-..+.+.. ...+. ++++.+.++.+....+.+++ .+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~~ 275 (510)
T PF00955_consen 196 NSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPRW 275 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccHH
Confidence 0000000000000 01122 22233333333333332211 11111
Q ss_pred --cccccchhHHHHHHHHHHHHHhccCCCceeEeeecccCCCCCc-------cccc-CCChhhHHHHHHHHHHHHHHHHH
Q 008914 288 --FWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSS-------AHQL-QLTGPHLGQTAKIGLISAVVALT 357 (549)
Q Consensus 288 --~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~glp~~~-------~p~~-~~~~~~~~~~~~~~~~~~iv~~~ 357 (549)
..+...+..++|++.+.+.+.++.+.... ++|.++.+.. ++.+ +..+.....++..++.+++.-++
T Consensus 276 vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F~ 351 (510)
T PF00955_consen 276 VREIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFFM 351 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12444566788888888887765322211 2343332111 1111 11111223445557778888889
Q ss_pred HHHHHHHHHhhhhC---CccCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCC------------------ccc
Q 008914 358 EAIAVGRSFASIKG---YHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGC------------------QTV 416 (549)
Q Consensus 358 e~~~~~~~~a~~~g---~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~Ga------------------rT~ 416 (549)
|+-.++....++.+ +..-.+-+|.-+|+.|.++|++|--..+++..||..+.++=. .+|
T Consensus 352 DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~EqR 431 (510)
T PF00955_consen 352 DQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQR 431 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEec
Confidence 88666554433322 122346789999999999999998888888888887766432 478
Q ss_pred chhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcCC
Q 008914 417 VSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLID 458 (549)
Q Consensus 417 ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li~ 458 (549)
+++++.++++.+.+ ++.|++.+||++||.|+.++.|+.-++
T Consensus 432 vT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~ 472 (510)
T PF00955_consen 432 VTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLS 472 (510)
T ss_dssp ------------------------------------------
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeec
Confidence 99999999887766 678999999999999999999987654
No 20
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.92 E-value=6e-07 Score=90.41 Aligned_cols=308 Identities=17% Similarity=0.193 Sum_probs=184.8
Q ss_pred hhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhccchhH
Q 008914 133 VIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAA 211 (549)
Q Consensus 133 ~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lr-lg~l~~fip~~V 211 (549)
.+.++-+.++-+.|.+..=.+.-.+++..+. .++. ...+..+-+.+|...++.|++| ++++++-||+++
T Consensus 67 Gv~ti~Ls~~yR~Pv~~aWSTPG~all~asl-~g~s---------~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sl 136 (402)
T COG3135 67 GVSTLTLSLRYRVPVLTAWSTPGAALLVASL-GGLS---------FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSL 136 (402)
T ss_pred HHHHHHHHhhhccceeeeecCccHHHHHhcc-CCCC---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHH
Confidence 3455666777777777654455555555443 2221 4556777888999999999999 699999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 008914 212 IVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLP 291 (549)
Q Consensus 212 i~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~ 291 (549)
-.+..+|+=+-..+..++. +.+ ++ + +.+..+...++.|.+.+|+
T Consensus 137 a~AmlAGILL~F~l~a~~a-----------------------~~~---~p--~-l~lpmv~~~ll~r~f~pr~------- 180 (402)
T COG3135 137 AAAMLAGILLRFGLKAFKA-----------------------LPT---QP--L-LVLPMVLAYLLARVFAPRY------- 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------------cCC---Ch--H-HHHHHHHHHHHHHHcCchH-------
Confidence 9999999877766444431 111 11 1 1122222333446665554
Q ss_pred cchhHHHHHHHHHHHHHhccCCCceeEeeecccCCCCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 008914 292 AIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKG 371 (549)
Q Consensus 292 ~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~glp~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g 371 (549)
+...+++++..++...|.-.+ ......+ ..|.+..|++++ ...+.+++-+.++.+...-.-+-+.=+.+|
T Consensus 181 --aV~aalvvgv~va~~~G~~~~-~~~~~~~--~~p~~v~P~Fs~-----~A~l~lalPL~lvtmasQN~pGiAvLka~g 250 (402)
T COG3135 181 --AVIAALVVGVLVAALLGDLHT-ALVALEI--STPTWVTPEFSF-----AAMLSLALPLFLVTMASQNLPGIAVLKAAG 250 (402)
T ss_pred --HHHHHHHHHHHHHHHhCcccc-ccccccc--CcceeeCCcccH-----HHHHHHhHHHHHHHHHhccCccceeehhcC
Confidence 566777888888877653211 1111111 123344555432 334445555566655554333333345689
Q ss_pred CccCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcC------CcccchhHHHHHHHHHHHHHhH---HHHHhhhH
Q 008914 372 YHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAG------CQTVVSNIVMAITVLLSLELFT---SLLYYTPI 442 (549)
Q Consensus 372 ~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~G------arT~ls~iv~a~~~ll~ll~l~---pl~~~iP~ 442 (549)
|+.+++--+.+-|+..+.++.||++.++- -.-|+.-.... .|--.+++++|+.-+++-+|.+ .++.-+|+
T Consensus 251 Y~pp~~pl~~~TGl~sll~ApfG~~t~nL-aAItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~ 329 (402)
T COG3135 251 YQPPPSPLIVATGLASLLSAPFGGHTVNL-AAITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPA 329 (402)
T ss_pred CCCCCchHHHHhHHHHHHhcccccceecH-HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 99999999999999999999999998663 22333333322 3666889999999888887744 56778898
Q ss_pred HHHHHHHHHHhhhcCC--HHHHHHHhcCCchhHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHH
Q 008914 443 AILASIILSALPGLID--INEAINIYKVDKLDFLACIGAFLGVL----FAS---VEIGLLAATVDMLF 501 (549)
Q Consensus 443 avLa~ili~~~~~li~--~~~~~~l~k~~~~d~~v~~~t~~~~~----~~~---~~~Gi~~gv~~sl~ 501 (549)
..++.+ +|+-|+. .+.+..-.| |..|..-.+++|+.|. ++| -..|++.|.+...+
T Consensus 330 ~li~~l---AGLALlg~~~~~l~~A~~-~~~~R~aAlvtF~VTaSG~tl~GIgaafWGLvaG~~~~~L 393 (402)
T COG3135 330 SLIAAL---AGLALLGTLGNSLQAALK-DEREREAALVTFLVTASGLTLFGIGAAFWGLVAGLLVLAL 393 (402)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHhc-CcccchhhhhheeehhccceeecccHHHHHHHHHHHHHHH
Confidence 766544 3333331 122333333 2223334455555443 233 34677777665433
No 21
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=98.63 E-value=4e-06 Score=87.89 Aligned_cols=315 Identities=12% Similarity=0.103 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhhCCCh------hhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHH--hhcCCC---C-ChH
Q 008914 108 SLSIPQSIGYANLAKLDP------QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQ--NVQDPA---A-DPV 175 (549)
Q Consensus 108 ~~~iPq~~aya~laglpp------~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~--~~~~~~---~-~~~ 175 (549)
.+.+|.-++=++=+|-.. +.-+.++.+..++=..||+.-.+..||.-+--.-+-+++. +...+. + +.+
T Consensus 29 ~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~ 108 (510)
T KOG1292|consen 29 TVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTE 108 (510)
T ss_pred hhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhH
Confidence 455666555443333221 2456778888899999999999999985443333333333 222211 1 111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhhhh-hhhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHH
Q 008914 176 A---YRKLVFTVTFFAGVFQSVFGLFRL-GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVF 251 (549)
Q Consensus 176 ~---~~~~~~~~~~l~Gi~~lllg~lrl-g~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~ 251 (549)
. .++.+-.+.++++++|.++|+.++ |.+.||++.-.+.=.++-+|+-..-...+
T Consensus 109 ~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~---------------------- 166 (510)
T KOG1292|consen 109 RFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFP---------------------- 166 (510)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhh----------------------
Confidence 1 245566788999999999999997 88999999998888888777765422211
Q ss_pred HhcccCCcchHHHHHHHHHHHHHHHHH-H--hhhccc---cccccccchhHHHHHHHHHHHHHh---ccCCC-----c--
Q 008914 252 SSLHHSYWYPLNFVLGCSFLIFLLIAR-F--IGRRNK---KLFWLPAIAPLLSVILSTLIVYLT---KADKH-----G-- 315 (549)
Q Consensus 252 ~~l~~~~~~~~~~~ig~~~l~~ll~~~-~--~~~~~~---~~~~~~~~~~Li~ii~~t~i~~~~---~~~~~-----~-- 315 (549)
++.+ +|. +|+..+.++++.. + ++++.. +...+...+.++++.+.-++++++ |...+ +
T Consensus 167 -~~~~---~we---I~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~ 239 (510)
T KOG1292|consen 167 -KLGK---HWE---ISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSS 239 (510)
T ss_pred -hhhh---hee---ecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCc
Confidence 1111 121 2233232232222 2 211111 111111123344555444444443 11111 0
Q ss_pred eeE--eeecccCCCCCcccc-c-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC----ccCCchHHHHH
Q 008914 316 VKI--VKHIKGGLNPSSAHQ-L-----QLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HLDGNKEMVAM 383 (549)
Q Consensus 316 v~~--vg~ip~glp~~~~p~-~-----~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~----~~d~nqEL~a~ 383 (549)
-++ -+ +-+.-|...+|- + .|+.... ...++.++++++|+++.-.+.++..+. ....||....+
T Consensus 240 ~RTD~~~-vi~~apWi~vPyP~QwG~P~f~~~~~----f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~e 314 (510)
T KOG1292|consen 240 CRTDRNG-VISSAPWIRVPYPFQWGPPTFSAGLV----FAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWE 314 (510)
T ss_pred ccccHhh-hhccCCceeecCCCccCCCcccHHHH----HHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhh
Confidence 000 01 111112222221 1 1222222 223456778888888766555554433 34569999999
Q ss_pred HHHHhHhhhccccccccccchhh-hhhhcCCcccchhHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHhhhcC
Q 008914 384 GFMNIVGSLTSCYVATGSFSRTA-VNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLI 457 (549)
Q Consensus 384 G~aNi~~~lfg~~p~~~s~srS~-v~~~~GarT~ls~iv~a~~~ll~ll~--l~pl~~~iP~avLa~ili~~~~~li 457 (549)
|++.+++|+||.-.++..+++.. +-.-+..-||..--++|.++++.-.+ ++.+|+.||.++.||+.-. ++.|+
T Consensus 315 Gig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv 390 (510)
T KOG1292|consen 315 GIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMV 390 (510)
T ss_pred hHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHH
Confidence 99999999999766655555443 33335556777777777777665554 8999999999999998643 44443
No 22
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=98.36 E-value=0.00017 Score=73.24 Aligned_cols=310 Identities=17% Similarity=0.210 Sum_probs=163.5
Q ss_pred HHHHHHhhCCChhhH--------HHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 008914 114 SIGYANLAKLDPQYG--------LYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVT 185 (549)
Q Consensus 114 ~~aya~laglpp~~g--------Lyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 185 (549)
..+||.=-|+++.+- |+++++-.++.+=|=.-+-...|.-+.+-.++..++..-++| .+..
T Consensus 80 ~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P~anLAGthgPmIpLIp~ivaaGgHP-----------Lalg 148 (492)
T PF11840_consen 80 AAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNPRANLAGTHGPMIPLIPLIVAAGGHP-----------LALG 148 (492)
T ss_pred HHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCccccccCCCCCcchhhHHHHHcCCCc-----------HHHH
Confidence 445555557776533 333432222222222223333455555656666665554433 3568
Q ss_pred HHHHHHHHHHhhhhhhh-hhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHHhcccCCcchHHH
Q 008914 186 FFAGVFQSVFGLFRLGF-LVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNF 264 (549)
Q Consensus 186 ~l~Gi~~lllg~lrlg~-l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 264 (549)
++.|++=++++.+|.|. +++.-++-|..|.+-=.|..=..+|+++++.-. ..++ ..+..+
T Consensus 149 ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa----------------~~~~---~~~i~f 209 (492)
T PF11840_consen 149 ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWA----------------NGFD---MGYIAF 209 (492)
T ss_pred HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHH----------------hccC---ccHHHH
Confidence 89999999999999876 899999999999888888888888888765332 1111 223333
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeecccCCCCCcccc--------cCC
Q 008914 265 VLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQ--------LQL 336 (549)
Q Consensus 265 ~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~glp~~~~p~--------~~~ 336 (549)
++-++++++.....+++||+ +.+| +.-+++.++++..|..- +.. -+.|+|... |. +.+
T Consensus 210 vvi~~tiv~Ya~L~k~~KrW-----LaIP---l~~~~a~~~a~~lGa~f---~f~--t~pglp~ln-P~YWWge~tGw~L 275 (492)
T PF11840_consen 210 VVIIVTIVLYAYLAKIEKRW-----LAIP---LCSILAGVLAFALGAPF---EFT--TEPGLPNLN-PMYWWGEETGWQL 275 (492)
T ss_pred HHHHHHHHHHHHHHHhccch-----hhhh---HHHHHHHHHHHHcCCCc---eee--cCCCCCCCC-CcccccCCccccc
Confidence 33333333333334444443 3222 23344555566655421 111 122333211 10 000
Q ss_pred ---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hCCccCCchHHHHHHHHHhHhhhccccccccccchhhh
Q 008914 337 ---TGPHLGQTAKIGLISAVVALTEAIAVGRSFASI------KGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAV 407 (549)
Q Consensus 337 ---~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~------~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v 407 (549)
+.+.+...+|.++.....=.-|.++- +.|.+. ++...|.|+.+....+=|++|+.+||--.+.|. +|-.
T Consensus 276 glP~~~hfiav~PFAiLAVaMWSpDflgh-rvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW-gTym 353 (492)
T PF11840_consen 276 GLPTLEHFIAVLPFAILAVAMWSPDFLGH-RVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSW-GTYM 353 (492)
T ss_pred CCCcHHHHHHhccHHHHHHHHhCchHHHH-HHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccc-hhhh
Confidence 11234445555442222211222221 223221 233468899999999999999999996655444 4433
Q ss_pred hhhcCCcc--cchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHhcCCch
Q 008914 408 NFSAGCQT--VVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPG-LIDINEAINIYKVDKL 471 (549)
Q Consensus 408 ~~~~GarT--~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~-li~~~~~~~l~k~~~~ 471 (549)
-=.+=+|- +-..+.++++++++.+...|.=-.+=.+++...+++-++- +.+ .. .+.||.+|.
T Consensus 354 IPaaIaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlvGVflPLle-AG-mqm~r~~k~ 418 (492)
T PF11840_consen 354 IPAAIAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLVGVFLPLLE-AG-MQMTRKGKT 418 (492)
T ss_pred hhHHHhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHHHHHHHHHH-HH-HHHHhcCCc
Confidence 33333444 5567889999888887777642222234555555553322 232 12 345555553
No 23
>PRK10720 uracil transporter; Provisional
Probab=93.03 E-value=0.83 Score=49.27 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=47.5
Q ss_pred HHHHHHHHHhHhhhccccccccccchhhhhhhcCCcccchhHHHHHHHHHHHHHhHHHHHhhhH
Q 008914 379 EMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPI 442 (549)
Q Consensus 379 EL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~pl~~~iP~ 442 (549)
++...=.++=++++++++-++...+-.+-|...+++|+.++-.....-..+++ ++..+|+
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li----~lg~~pk 320 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAI----LLSCVGK 320 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHH----HHHHHHH
Confidence 45666788899999999988888888899999999999999988876665553 3445665
No 24
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=90.11 E-value=15 Score=41.21 Aligned_cols=116 Identities=11% Similarity=0.093 Sum_probs=77.3
Q ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHh----hC--CChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHH
Q 008914 89 RNYKASKFKSDLMAGLTLASLSIPQSIGYANL----AK--LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSA 162 (549)
Q Consensus 89 ~~y~~~~l~~DiiAGltv~~~~iPq~~aya~l----ag--lpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~ 162 (549)
+.++++.+..=+..+++++++..=+.++-+.. .| .++-.=|.+..+++++-++||+.|....-. .+
T Consensus 251 ~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~s--------rs 322 (563)
T TIGR00815 251 ITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGSLS--------RT 322 (563)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcch--------HH
Confidence 34566667766777788888887777776542 22 566677999999999999999977642211 11
Q ss_pred HHHh-hcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008914 163 LMQN-VQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVI 223 (549)
Q Consensus 163 ~v~~-~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~I 223 (549)
.+.. .+. .. + ...+++|++.+++.++ ++.+..++|.+++.|.+.-+++.+
T Consensus 323 ~~~~~~G~--~t-----~---~a~i~~~~~~l~~~l~-~~~~l~~iP~~~la~ili~~~~~l 373 (563)
T TIGR00815 323 AVNAKAGC--RT-----Q---LSGVVTAIVVLLVLLV-LTPLFYYIPQAALAAIIISAVRGL 373 (563)
T ss_pred HHHHhcCC--cc-----h---HHHHHHHHHHHHHHHH-HHHHHHhChHHHHHHHHHHHHhcc
Confidence 1111 110 00 1 2455666666666555 577999999999999998888764
No 25
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=85.72 E-value=9.1 Score=40.91 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHH----HHHhhCCCh-----hhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChH
Q 008914 105 TLASLSIPQSIG----YANLAKLDP-----QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPV 175 (549)
Q Consensus 105 tv~~~~iPq~~a----ya~laglpp-----~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~ 175 (549)
+.+++..-++++ .+...|-++ .-++.+..+++++-++||+.+...... .+..... .+.. +
T Consensus 226 ~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~---~~~~~~~----tg~~--s-- 294 (406)
T TIGR03173 226 IVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQ---NVGLVQL----TGVK--S-- 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhh---hHHHHHH----hCCC--c--
Confidence 344444444444 444455332 368999999999999999987543322 1111111 1100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhccchhHHHHHHHHHHHHHHHHhhh
Q 008914 176 AYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLK 229 (549)
Q Consensus 176 ~~~~~~~~~~~l~Gi~~lllg~l-rlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~ 229 (549)
+ .....+|++.++++++ +++.++.++|.||+.|.+...=-.+....++
T Consensus 295 ---r---~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~ 343 (406)
T TIGR03173 295 ---R---YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIR 343 (406)
T ss_pred ---h---HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1346788888888887 6889999999999999555333333333333
No 26
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=84.54 E-value=17 Score=40.59 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccccccccchhh--hhhhcCC----ccc--
Q 008914 345 AKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTA--VNFSAGC----QTV-- 416 (549)
Q Consensus 345 ~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~--v~~~~Ga----rT~-- 416 (549)
+..+++.+++.+=++++.++ ..| .++..-|.+-=++-++-++||+.|.--+-..++ +...+.. ++.
T Consensus 25 l~AGltva~valP~ama~a~----~aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~ 98 (554)
T COG0659 25 LLAGLTVAAVALPLAMAFAI----AAG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98 (554)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HcC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH
Confidence 34556677777777776665 223 788999999999999999999988542222221 1111111 222
Q ss_pred ---chhHHHHHHHHHHHHH-hHHHHHhhhHHHHHHHHHHHhhhcC
Q 008914 417 ---VSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALPGLI 457 (549)
Q Consensus 417 ---ls~iv~a~~~ll~ll~-l~pl~~~iP~avLa~ili~~~~~li 457 (549)
.+.+.+|++.+++-++ ++-+.+++|.+++.|.+--+++-++
T Consensus 99 ~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 99 LAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 3344455554444444 8889999999999998765555543
No 27
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=83.66 E-value=7.5 Score=41.74 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHH----HHHHhhCCCh------hhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCC
Q 008914 104 LTLASLSIPQSI----GYANLAKLDP------QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAAD 173 (549)
Q Consensus 104 ltv~~~~iPq~~----aya~laglpp------~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~ 173 (549)
+..+++..-+++ +.+..+|-++ .-++.+-.+++++-++||+.+...... .+-+ +..-+. .
T Consensus 240 ~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~se---n~g~----~~~T~~--~- 309 (415)
T TIGR00801 240 LPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQ---NIGV----IALTRV--A- 309 (415)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhh---hhee----eeecCC--C-
Confidence 444455555554 4455566532 378999999999999999977754322 1100 010000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhccchhHHHHHHHHHHHHHHHHhhhhh
Q 008914 174 PVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGL 231 (549)
Q Consensus 174 ~~~~~~~~~~~~~l~Gi~~lllg~l-rlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~ 231 (549)
-+ .+...+|++.+++|++ |++.++..+|.||+.|.....--.+..+.++.+
T Consensus 310 ----sr---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l 361 (415)
T TIGR00801 310 ----SR---WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRIL 361 (415)
T ss_pred ----ch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1556788888888888 689999999999999888766666666666544
No 28
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=78.60 E-value=19 Score=38.96 Aligned_cols=60 Identities=17% Similarity=-0.059 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhHhhhccccccccccchhhhhhhcC--CcccchhHHHHHHHHHHHHHhHHHHHhhhH
Q 008914 377 NKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAG--CQTVVSNIVMAITVLLSLELFTSLLYYTPI 442 (549)
Q Consensus 377 nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~G--arT~ls~iv~a~~~ll~ll~l~pl~~~iP~ 442 (549)
++++..=-.++=++++++++-++ +..|....+.| +-|+..+-.....-...+. ++..+||
T Consensus 274 ~~~l~rgi~~dGi~s~laglfg~--~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ili----llgl~PK 335 (433)
T PRK11412 274 NTRYRRSFVATGFMTLITVPLAV--IPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCL----LVALIPA 335 (433)
T ss_pred CcccccchhhccHHHHHHHhcCC--CCCCchhhhhhhhhhcCCchhHHHHHHHHHHH----HHHHHHH
Confidence 45666667788888888887654 44455555554 4666666665555555442 3445555
No 29
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=76.91 E-value=13 Score=40.16 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=23.9
Q ss_pred HHHHHHHHHHH-HhhCCChhhHHHHhhhhhHHHHhcc
Q 008914 108 SLSIPQSIGYA-NLAKLDPQYGLYTSVIPPLIYALMG 143 (549)
Q Consensus 108 ~~~iPq~~aya-~laglpp~~gLyss~i~~liy~lfG 143 (549)
+-.+=|..... .-+++|...|-..+++++++...-.
T Consensus 64 iaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~ 100 (451)
T COG2233 64 IGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGT 100 (451)
T ss_pred HHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhc
Confidence 33334555444 2247888899888999988876544
No 30
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=71.92 E-value=23 Score=38.18 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=60.2
Q ss_pred hhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHH-HHHHHHHHHHHHHhhh-hhhhh
Q 008914 126 QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVF-TVTFFAGVFQSVFGLF-RLGFL 203 (549)
Q Consensus 126 ~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~-~~~~l~Gi~~lllg~l-rlg~l 203 (549)
.-++.+-.+++++-+++|+++....+-..-. ++.- +.+. .....+|++++++|++ |++.+
T Consensus 283 ~r~l~adGl~t~~agl~g~~p~tt~~en~g~-------i~~T-----------~v~SR~v~~~a~~~lillgl~Pk~~al 344 (429)
T TIGR03616 283 GRAFVGDGLATMLSGSVGGTGVTTYAENIGV-------MAVT-----------KVYSTLVFVAAAVFAILLGFSPKFGAL 344 (429)
T ss_pred ccchhhhhHHHHHHHhcCCCCCcceeeeeee-------eeec-----------CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999876543211100 0000 0000 2345678888888887 58999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhh
Q 008914 204 VDFLSHAAIVGFMAGAAIVIGLQQLK 229 (549)
Q Consensus 204 ~~fip~~Vi~Gf~~gigl~I~~~Ql~ 229 (549)
+..+|.||+.|.+.-.--.|..+.++
T Consensus 345 ~~~IP~pVlgG~~i~~fg~i~~~Gi~ 370 (429)
T TIGR03616 345 IHTIPVAVLGGASIVVFGLIAVAGAR 370 (429)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777777777776
No 31
>PRK11660 putative transporter; Provisional
Probab=70.32 E-value=41 Score=37.71 Aligned_cols=169 Identities=12% Similarity=0.150 Sum_probs=118.0
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCC
Q 008914 334 LQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGC 413 (549)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~Ga 413 (549)
++...+.+..++.++++..+.++.......+..+++.+.+-+..-.=.+-=++.++|++-++-..+-+..+...+.+++-
T Consensus 275 ~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~l 354 (568)
T PRK11660 275 WDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPI 354 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHH
Confidence 33344667888888888888888777777777777877777777777888889999999888776778888888889888
Q ss_pred cccchhHHHHHHHHHH--HHHhHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCCchhHHHHH-HHHHHHHHHHHHH
Q 008914 414 QTVVSNIVMAITVLLS--LELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACI-GAFLGVLFASVEI 490 (549)
Q Consensus 414 rT~ls~iv~a~~~ll~--ll~l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~-~t~~~~~~~~~~~ 490 (549)
-+=.++++..+.+++. ++-.-|.-..=+.-+.+++-+.-.-.+. +.+++..|.+..-+++++ .+++.-+..|+..
T Consensus 355 a~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~ 432 (568)
T PRK11660 355 SAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVV--DLLRHAPKDDIIVMLLCMSLTVLFDMVIAISV 432 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888887776555 3334444444444455555443222333 223455555666676654 4555667789999
Q ss_pred HHHHHHHHHHHHHH
Q 008914 491 GLLAATVDMLFYFQ 504 (549)
Q Consensus 491 Gi~~gv~~sl~~~~ 504 (549)
|+.+++++-+..+.
T Consensus 433 Gi~~s~~~~~~~~~ 446 (568)
T PRK11660 433 GIVLASLLFMRRIA 446 (568)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988665554
No 32
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=63.97 E-value=84 Score=33.32 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHhhCCCh------hhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhc
Q 008914 99 DLMAGLTLASLSIPQSIG----YANLAKLDP------QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQ 168 (549)
Q Consensus 99 DiiAGltv~~~~iPq~~a----ya~laglpp------~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~ 168 (549)
-++.-++..++..-.+++ .+..+|.+. .-++.+-.+++++.++||+++..+..-... .+.. .+..
T Consensus 233 ~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g---~i~~--t~v~ 307 (389)
T PF00860_consen 233 AILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAG---GIAA--TGVA 307 (389)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHH---HHHH--HTB-
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccch---hhhh--hccc
Confidence 344455555555555555 233455432 368999999999999999977764432221 1111 0110
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhccchhHHHHHHHHHHHHHHHHhhhhh
Q 008914 169 DPAADPVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGL 231 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~Gi~~lllg~l-rlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~ 231 (549)
.--..+.+|++.++++++ +++.+...+|.||+.|...-.--.++.++++.+
T Consensus 308 ------------Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i 359 (389)
T PF00860_consen 308 ------------SRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNI 359 (389)
T ss_dssp -------------HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhh
Confidence 012455677777788866 578899999999998887766666666777644
No 33
>PHA00736 hypothetical protein
Probab=51.35 E-value=1.1e+02 Score=23.55 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=47.0
Q ss_pred HHHHHHhhCCChhhHHHH-hhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 008914 114 SIGYANLAKLDPQYGLYT-SVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVF 191 (549)
Q Consensus 114 ~~aya~laglpp~~gLys-s~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~ 191 (549)
+++.|.-.|+.|+.+..- -..-++.|-.-|.-|.+.+|-.+..+++.-..+- .+|.......+++|++
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdflp----------lfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFLP----------LFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 567777889999877553 4456788888899998888887777666543322 3466666666666654
No 34
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=50.75 E-value=53 Score=31.29 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=43.3
Q ss_pred HhhhHHHHHHHHHHHhhhcC-CHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 008914 438 YYTPIAILASIILSALPGLI-DINEAINIYKVDKLDFLACIGAFLGVLFASVEIGL 492 (549)
Q Consensus 438 ~~iP~avLa~ili~~~~~li-~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~~~~Gi 492 (549)
..+...+|-.+++.+|+++= |.+.++++++.++.-..+.+.+.++++..+...+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999995 66788999999998888887777777665544443
No 35
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=47.05 E-value=1.3e+02 Score=29.90 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=89.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCCccc
Q 008914 337 TGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTV 416 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ 416 (549)
..+.+..++.++++..+.+....-+.++....+.+.+-+.--.=.+.=++.++||+-+|...+-+..+-..+.++.--+-
T Consensus 146 ~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~ 225 (280)
T PF00916_consen 146 ILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGL 225 (280)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhH
Confidence 34557777888888888888887777777777766666665556777788899999888888888888888999888888
Q ss_pred chhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhcCC
Q 008914 417 VSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVD 469 (549)
Q Consensus 417 ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k~~ 469 (549)
+++++..++++...-++..+=..+=-+++--+.+- .++.-+.+.+++.-|.|
T Consensus 226 ~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~-l~~~~~~~~~~~~~~~d 277 (280)
T PF00916_consen 226 ISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGIS-LIDWSSLRRLWRVSKAD 277 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHhcCChhh
Confidence 99999888777765554433222223333333322 44444344445444433
No 36
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=43.97 E-value=4.3e+02 Score=28.23 Aligned_cols=104 Identities=19% Similarity=0.140 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCch-------HHHHHHHHHhHhhhccccccccccchh--hhh-hhcCC
Q 008914 344 TAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNK-------EMVAMGFMNIVGSLTSCYVATGSFSRT--AVN-FSAGC 413 (549)
Q Consensus 344 ~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nq-------EL~a~G~aNi~~~lfg~~p~~~s~srS--~v~-~~~Ga 413 (549)
.+..+++..++++..+..+.-.-++.-| .|++| -.++.|++++.=+..-=+|...+.|-- ++- ...++
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC
Confidence 3455677788888888766554444433 33333 457788888888887788988777721 122 11221
Q ss_pred cccchh-----HHHHHHHHHHHH--HhHHHHHhhhHHHHHHHHH
Q 008914 414 QTVVSN-----IVMAITVLLSLE--LFTSLLYYTPIAILASIIL 450 (549)
Q Consensus 414 rT~ls~-----iv~a~~~ll~ll--~l~pl~~~iP~avLa~ili 450 (549)
-.++. +++++++++.-+ .+..+.++||.++.++++-
T Consensus 101 -~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLA 143 (395)
T TIGR00843 101 -ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLA 143 (395)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 23443 444554444222 3667889999999999883
No 37
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.09 E-value=86 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 008914 486 ASVEIGLLAATVDMLFYFQDRKSTI 510 (549)
Q Consensus 486 ~~~~~Gi~~gv~~sl~~~~~~~s~~ 510 (549)
+|+..|+ +|+++.+.|++||+.+.
T Consensus 71 ~gv~aGv-Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 71 FGVMAGV-IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHS--
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 3455555 44444455555655443
No 38
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.92 E-value=4.5e+02 Score=23.85 Aligned_cols=25 Identities=20% Similarity=-0.012 Sum_probs=16.4
Q ss_pred ccccccccccchhhhhhhcCCcccc
Q 008914 393 TSCYVATGSFSRTAVNFSAGCQTVV 417 (549)
Q Consensus 393 fg~~p~~~s~srS~v~~~~GarT~l 417 (549)
.||||.++|..-|++.-..|=+.++
T Consensus 46 TGGMPSsHSA~VtALat~ial~~G~ 70 (153)
T COG1963 46 TGGMPSSHSALVTALATSIALTEGL 70 (153)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhcC
Confidence 4899999887766665554444443
No 39
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=26.31 E-value=1.2e+02 Score=32.32 Aligned_cols=39 Identities=13% Similarity=0.399 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhh---hhhhhhh-ccchhHHHHHHHHHHHHHH
Q 008914 186 FFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIG 224 (549)
Q Consensus 186 ~l~Gi~~lllg~l---rlg~l~~-fip~~Vi~Gf~~gigl~I~ 224 (549)
+....+.+++|.. |..++-| +||.||+.|++.++.+.+.
T Consensus 9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 3334444555533 3455655 8999999999998777665
No 40
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.13 E-value=3.6e+02 Score=26.31 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=43.7
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHh-----cCCchhHHHHHHHHHHHHHHHH
Q 008914 414 QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIY-----KVDKLDFLACIGAFLGVLFASV 488 (549)
Q Consensus 414 rT~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~-----k~~~~d~~v~~~t~~~~~~~~~ 488 (549)
+++...+..|+.-+++++ +|-++++.++.+++++-++..++ ++..++- ..+++--++.++
T Consensus 144 ~k~~k~~~~gi~aml~Vf------------~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~---~~~~lwyi~Y~v 208 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVF------------MLFALVMTIGSDFMDFLHVDHLYKAIASKIKASES---FWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHHHhHHHHHHHH------------HHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHh---HHHHHHHHHHhh
Confidence 455566666655554442 23445566677777766655554 2333332 233344455777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008914 489 EIGLLAATVDMLFYFQDR 506 (549)
Q Consensus 489 ~~Gi~~gv~~sl~~~~~~ 506 (549)
.+-+++|....+.-++|.
T Consensus 209 PY~~~ig~~i~l~~~~~~ 226 (230)
T PF03904_consen 209 PYIFAIGLFIYLYEWIRA 226 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776666655554
No 41
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=26.03 E-value=2e+02 Score=21.49 Aligned_cols=47 Identities=11% Similarity=0.374 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 008914 153 VAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFL 207 (549)
Q Consensus 153 ~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fi 207 (549)
.+..+.+.+..+.+.+.+ +.+...++.+|++.+.+.+-+++.+.+.+
T Consensus 8 igii~~~l~~vlk~~~~~--------e~a~~isla~~i~I~~~~~~~i~~l~~~i 54 (58)
T PF06686_consen 8 IGIIAAFLALVLKQAGEP--------EYASLISLAGGILIFLLVLPKISSLFETI 54 (58)
T ss_pred HHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667677665422 45677888899999998888888776654
No 42
>COG4129 Predicted membrane protein [Function unknown]
Probab=25.04 E-value=2.3e+02 Score=29.54 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=34.0
Q ss_pred hcCCcccchhHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHhc
Q 008914 410 SAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYK 467 (549)
Q Consensus 410 ~~GarT~ls~iv~a~~~ll~ll~l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l~k 467 (549)
+.|.||=-+++.+++.++++-+ --.|.++.|+|.-+..+.--..+.++..|+
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~------l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~ 59 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHL------LGLPQPAFAGISAVLCLSPTIKRSLKRALQ 59 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------hCCCchHHHHHHHhhcccCcchHHHHHHHH
Confidence 4677777777777777666653 335678888887776665544555555543
No 43
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.96 E-value=1.4e+02 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCCccC
Q 008914 345 AKIGLISAVVALTEAIAVGRSFASIKGYHLD 375 (549)
Q Consensus 345 ~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d 375 (549)
+..+++.++++|+.+++.+|-+++..-.+.|
T Consensus 61 ldvalvlAll~Fv~tva~Aryl~~g~~~~~~ 91 (94)
T PRK12600 61 LEVILLIGILAFIGTAAFSKFIEKGKVIERD 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 4456778999999999999987754433334
No 44
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=24.25 E-value=2.5e+02 Score=21.43 Aligned_cols=17 Identities=12% Similarity=0.511 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHhc
Q 008914 294 APLLSVILSTLIVYLTK 310 (549)
Q Consensus 294 ~~Li~ii~~t~i~~~~~ 310 (549)
+.-++|+++-+++|+.|
T Consensus 41 GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 77899999999999765
No 45
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=24.06 E-value=1.2e+02 Score=29.86 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=33.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhh---CCChhhHHHHhhhhhHHHH
Q 008914 93 ASKFKSDLMAGLTLASLSIPQSIGYANLA---KLDPQYGLYTSVIPPLIYA 140 (549)
Q Consensus 93 ~~~l~~DiiAGltv~~~~iPq~~aya~la---glpp~~gLyss~i~~liy~ 140 (549)
.+.+|+.+.+++-+.+-.+|-+++|+.++ |+++. ++.....++|+
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~---e~~lmS~~iyA 56 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPL---EAILMSLLIYA 56 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHc
Confidence 35688899999999999999999999875 66654 34444455553
No 46
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=23.70 E-value=1.1e+03 Score=26.93 Aligned_cols=102 Identities=14% Similarity=0.248 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHh----h--CCChhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHH
Q 008914 103 GLTLASLSIPQSIGYANL----A--KLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVA 176 (549)
Q Consensus 103 Gltv~~~~iPq~~aya~l----a--glpp~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~~~~ 176 (549)
++.++++.+=..++-+.. - .+++--=|++-.+..++-++|+.-|.. |.. .-+++...... ..
T Consensus 333 ~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~t--gs~------sRSav~~~sG~-~T--- 400 (665)
T KOG0236|consen 333 AFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTT--GSF------SRSAVNIKSGG-RT--- 400 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEccc--chh------hHHHHHhhcCC-cc---
Confidence 555555555444554432 2 256666688888999999999886652 222 22222222110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHHHH
Q 008914 177 YRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIV 222 (549)
Q Consensus 177 ~~~~~~~~~~l~Gi~~lllg~lrlg~l~~fip~~Vi~Gf~~gigl~ 222 (549)
++ ..+++|++ .++.+.-++.+..++|..++...+..++.-
T Consensus 401 --~~---s~i~~~~~-vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 401 --QV---AGIVSAAL-VLLALLFLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred --hH---HHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Confidence 11 22222222 233334478899999999999988777665
No 47
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=23.29 E-value=87 Score=28.31 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=13.7
Q ss_pred hccccccccccchhHHHHHHHHH
Q 008914 282 RRNKKLFWLPAIAPLLSVILSTL 304 (549)
Q Consensus 282 ~~~~~~~~~~~~~~Li~ii~~t~ 304 (549)
.-..+.+.+|.|++++++++-.+
T Consensus 24 e~i~~ll~lPiPGsViGMlLL~l 46 (141)
T PRK04125 24 NIIASFLPIPMPASVIGLVLLFV 46 (141)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHH
Confidence 33344445677788877765543
No 48
>COG4769 Predicted membrane protein [Function unknown]
Probab=23.22 E-value=6.2e+02 Score=23.61 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccC---CCccccchhHH-HHHHHHHHHHhhcCCCCChHHHHHHHH
Q 008914 107 ASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGS---SREIAIGPVAV-VSMLLSALMQNVQDPAADPVAYRKLVF 182 (549)
Q Consensus 107 ~~~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~---s~~~~~gp~a~-~sl~~~~~v~~~~~~~~~~~~~~~~~~ 182 (549)
|+-.+|..|+.-. ++--..+.....-.++-++|++ ++....+-.+. .|.+.-..+.+.+ |.. ..++.+-.
T Consensus 39 GLaNivvlIa~~~---l~~~~~~~~i~lr~il~AL~sGtlfs~~Fl~sfaG~i~S~L~m~~l~~f~-~k~--~S~lgiS~ 112 (181)
T COG4769 39 GLANIVVLIAFET---LNFKDALQTILLRVILQALFSGTLFSPVFLYSFAGAILSTLFMYFLYQFG-PKY--LSLLGISV 112 (181)
T ss_pred chhhhHHHHhHHh---ccHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHcC-Cce--Eeeeehhh
Confidence 3444444444322 2333344445555555566555 33333332222 2222223344433 110 01133445
Q ss_pred HHHHHHHHHHHHHhhhhhhh--hhhccchhHHHHHHHHHHHHHHHHhh
Q 008914 183 TVTFFAGVFQSVFGLFRLGF--LVDFLSHAAIVGFMAGAAIVIGLQQL 228 (549)
Q Consensus 183 ~~~~l~Gi~~lllg~lrlg~--l~~fip~~Vi~Gf~~gigl~I~~~Ql 228 (549)
.-+|.--+.|+++.-+=.+. ...++|--+..|..+|.++-+..+++
T Consensus 113 mGaF~hNl~QLivas~Lv~~~~v~l~lPll~flGivsG~~vg~~~~~~ 160 (181)
T COG4769 113 MGAFTHNLGQLIVASFLVFTTSVMLYLPLLIFLGIVSGTAVGILANTL 160 (181)
T ss_pred HHHHHHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888887665544 67889999999999999999987765
No 49
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=22.83 E-value=7.9e+02 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=21.6
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008914 196 GLFRLGFLVDFLSHAAIVGFMAGAAIVI 223 (549)
Q Consensus 196 g~lrlg~l~~fip~~Vi~Gf~~gigl~I 223 (549)
|---...+++.+|.-++.|+..+-|++=
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmLP 190 (267)
T PRK09757 163 AQGAMQALVKAMPAWLTHGFEVAGGILP 190 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3334677899999999999988777654
No 50
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=22.36 E-value=76 Score=26.24 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=22.6
Q ss_pred cCCCeEEEEecccccccccHHHHHHHhhhhh
Q 008914 515 SRPCLIFFTFSHGIWFIISVYYFIQKFIQAT 545 (549)
Q Consensus 515 ~~~~~~~~~~~~g~lFf~s~~~~~~~~~~~~ 545 (549)
+.|++.+++.. |-+||+|..+|.+.+.+..
T Consensus 5 ~~~~v~ii~~~-G~l~f~~~~~~~~~l~~~~ 34 (100)
T cd06844 5 KVDDYWVVRLE-GELDHHSVEQFKEELLHNI 34 (100)
T ss_pred EECCEEEEEEE-EEecHhhHHHHHHHHHHHH
Confidence 45777777666 5688899999999986544
No 51
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=21.67 E-value=8.3e+02 Score=24.54 Aligned_cols=29 Identities=7% Similarity=0.153 Sum_probs=22.5
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008914 196 GLFRLGFLVDFLSHAAIVGFMAGAAIVIG 224 (549)
Q Consensus 196 g~lrlg~l~~fip~~Vi~Gf~~gigl~I~ 224 (549)
|---...+++.+|+.+..|+..+.|++=+
T Consensus 162 G~~~v~~il~~iP~~v~~Gl~vaggmLPA 190 (265)
T TIGR00822 162 SQSAVQAMLKAIPEVVTHGLQIAGGIIVV 190 (265)
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHhhHHH
Confidence 33346778999999999999988777543
No 52
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=21.58 E-value=80 Score=26.25 Aligned_cols=30 Identities=10% Similarity=-0.021 Sum_probs=23.0
Q ss_pred cCCCeEEEEecccccccccHHHHHHHhhhhh
Q 008914 515 SRPCLIFFTFSHGIWFIISVYYFIQKFIQAT 545 (549)
Q Consensus 515 ~~~~~~~~~~~~g~lFf~s~~~~~~~~~~~~ 545 (549)
+.++..+++. .|.+||++...|.+.+.+..
T Consensus 5 ~~~~~~vi~l-~G~L~f~~~~~~~~~l~~~~ 34 (106)
T TIGR02886 5 VKGDVLIVRL-SGELDHHTAERVRRKIDDAI 34 (106)
T ss_pred EECCEEEEEE-ecccchhhHHHHHHHHHHHH
Confidence 4567666665 66778899999999997764
No 53
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=21.36 E-value=6.3e+02 Score=25.42 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHHHHhH----HHHHhhhHHHHHHHHH------HHhhhcCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHH--HHH
Q 008914 424 ITVLLSLELFT----SLLYYTPIAILASIIL------SALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFASV--EIG 491 (549)
Q Consensus 424 ~~~ll~ll~l~----pl~~~iP~avLa~ili------~~~~~li~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~~--~~G 491 (549)
+...+.+++.+ .+++.+|.-++.++-+ .+|+.|+ ++.+||. ....-.++.|+.+.+.++ ..|
T Consensus 154 ~~~fl~~~fG~~~v~~~~~~iP~~v~~GL~vaggmLPAvGfAmL----l~~m~~k--~~~~ff~lGF~l~ayl~~~~~i~ 227 (267)
T PRK09757 154 VIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLL----LRVMFKA--QYIPYLIAGFLFVCYIQVSNLLP 227 (267)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHhhc--chHHHHHHHHHHHHHhCCccHHH
Confidence 33344444443 5778999887766543 3333332 3556653 244445677877777774 466
Q ss_pred H-HHHHHHHHHHHHH
Q 008914 492 L-LAATVDMLFYFQD 505 (549)
Q Consensus 492 i-~~gv~~sl~~~~~ 505 (549)
+ .+|++++++++..
T Consensus 228 iaiig~~iA~~~~~~ 242 (267)
T PRK09757 228 VAVLGAGFAVYEFFN 242 (267)
T ss_pred HHHHHHHHHHHHHHh
Confidence 5 3567777654443
No 54
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=21.06 E-value=4.5e+02 Score=26.43 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=42.5
Q ss_pred cCCchHHHHHHHHHhHhhhccccccccccchhhhhhhcCCcccchhHHHHHHHHHHHHHhHHHHH
Q 008914 374 LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLY 438 (549)
Q Consensus 374 ~d~nqEL~a~G~aNi~~~lfg~~p~~~s~srS~v~~~~GarT~ls~iv~a~~~ll~ll~l~pl~~ 438 (549)
+-..=||..+|.+|+-++.- -=+.+++.-.|...+.+|-.++-+..-.|+-+.....++.-+.+
T Consensus 51 iGatLEL~~LG~~~iGgavp-PD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGGAVP-PDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCcccCCC-CchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999877332 23567888889999998887666555555555555544444433
Done!