Query 008914
Match_columns 549
No_of_seqs 328 out of 1924
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 4.4E-29 1.5E-33 264.3 34.9 333 96-471 14-361 (429)
2 3qe7_A Uracil permease; uracil 86.8 11 0.00039 39.0 15.0 109 104-229 232-351 (429)
3 3ny7_A YCHM protein, sulfate t 39.4 19 0.00064 29.8 3.0 29 516-545 15-43 (118)
4 1bts_A BAND 3 anion transport 39.3 18 0.00062 21.8 2.0 20 128-147 6-25 (26)
5 3oiz_A Antisigma-factor antago 37.0 18 0.00061 28.9 2.4 28 516-544 14-41 (99)
6 2kln_A Probable sulphate-trans 35.4 35 0.0012 28.4 4.2 33 513-546 10-42 (130)
7 4dgh_A Sulfate permease family 26.8 51 0.0018 27.4 3.8 29 515-544 17-45 (130)
8 3llo_A Prestin; STAS domain, c 25.9 33 0.0011 29.1 2.4 32 513-545 25-56 (143)
9 4dgf_A Sulfate transporter sul 14.5 69 0.0023 26.8 1.8 31 513-544 17-48 (135)
10 2k1k_A Ephrin type-A receptor 13.3 1.6E+02 0.0056 19.2 2.9 21 486-506 14-36 (38)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=4.4e-29 Score=264.28 Aligned_cols=333 Identities=14% Similarity=0.101 Sum_probs=252.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHhhhhhHHHHhccCCCccc-cchhHH-HHHHHHHHHHhhcCCCCC
Q 008914 96 FKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIA-IGPVAV-VSMLLSALMQNVQDPAAD 173 (549)
Q Consensus 96 l~~DiiAGltv~~~~iPq~~aya~laglpp~~gLyss~i~~liy~lfG~s~~~~-~gp~a~-~sl~~~~~v~~~~~~~~~ 173 (549)
+++++++|++..+.+..-.++--.+-|+||..++++|.++++++++++++|.-. .|+... .+.+.. +.. ++
T Consensus 14 ~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~g----- 86 (429)
T 3qe7_A 14 LLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-LG----- 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-GC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-cC-----
Confidence 788999999999855444444444459999999999999999999997777544 676432 222222 222 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh--hhh--hhhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHH
Q 008914 174 PVAYRKLVFTVTFFAGVFQSVFGLF--RLG--FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGS 249 (549)
Q Consensus 174 ~~~~~~~~~~~~~l~Gi~~lllg~l--rlg--~l~~fip~~Vi~Gf~~gigl~I~~~Ql~~~~G~~~~~~~~~~~~~~~~ 249 (549)
++.+....+++|++++++|++ |+| ++.|++|+.|+..+++.+|+.++-.+++..-|... ..
T Consensus 87 ----~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~---~~-------- 151 (429)
T 3qe7_A 87 ----YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA---EG-------- 151 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB---TT--------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC---CC--------
Confidence 788899999999999999998 775 89999999888889999999999888886433211 00
Q ss_pred HHHhcccCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhccCCCceeEeeecc-cCCCC
Q 008914 250 VFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNP 328 (549)
Q Consensus 250 ~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip-~glp~ 328 (549)
+. .++.++.++++++++++++.++.|++.| .++.++++++++++++.++..+.. .+++.| -++|.
T Consensus 152 -----~~--~~~~~~~la~~tl~iii~~~~~~kg~~~-----~~aiLigivvg~~~a~~~G~~d~~--~v~~a~~~~lP~ 217 (429)
T 3qe7_A 152 -----QT--PDSKTIIISITTLAVTVLGSVLFRGFLA-----IIPILIGVLVGYALSFAMGIVDTT--PIINAHWFALPT 217 (429)
T ss_dssp -----BC--CCHHHHHHHHHHHHHHHHHHHSSSTTTT-----THHHHHHHHHHHHHHHHHHHTTSS--HHHHSCSSCCCC
T ss_pred -----cc--ccHHHHHHHHHHHHHHHHHHHHhcccch-----hhHHHHHHHHHHHHHHHhcCCCcc--cccccccccccC
Confidence 11 4677888899988888777655444433 237899999999999988753221 122222 24555
Q ss_pred CcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc----cCCchHHHHHHHHHhHhhhccccccccccch
Q 008914 329 SSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVATGSFSR 404 (549)
Q Consensus 329 ~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~----~d~nqEL~a~G~aNi~~~lfg~~p~~~s~sr 404 (549)
+..|++ ++..+ ...+.++++.++|+++..++.+++.|++ .|.|||+.++|++|+++++||++|+|++..+
T Consensus 218 ~~~P~f--~~~~i----~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en 291 (429)
T 3qe7_A 218 LYTPRF--EWFAI----LTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGEN 291 (429)
T ss_dssp CCCCCC--CHHHH----HHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHH
T ss_pred CCCCcc--cHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHh
Confidence 556654 43333 3345678889999999998888877754 4679999999999999999999999986667
Q ss_pred hhhhhhcCCcccchhHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHH--hcCCch
Q 008914 405 TAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINI--YKVDKL 471 (549)
Q Consensus 405 S~v~~~~GarT~ls~iv~a~~~ll~ll~--l~pl~~~iP~avLa~ili~~~~~li~~~~~~~l--~k~~~~ 471 (549)
+.++..+|++||.+.+++|++++++.++ ++++++.||.++++|+.++ .++++....++.+ .|+|..
T Consensus 292 ~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~ 361 (429)
T 3qe7_A 292 IGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYN 361 (429)
T ss_dssp HHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCC
Confidence 7788899999999999999988776543 6789999999999998765 8999999999888 777753
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=86.82 E-value=11 Score=39.03 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHH----HHHhhCCC------hhhHHHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCC
Q 008914 104 LTLASLSIPQSIG----YANLAKLD------PQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAAD 173 (549)
Q Consensus 104 ltv~~~~iPq~~a----ya~laglp------p~~gLyss~i~~liy~lfG~s~~~~~gp~a~~sl~~~~~v~~~~~~~~~ 173 (549)
++++++..-+.++ .+..+|-+ ..-++.+-.+++++-++||+++....+- ..-+.+. .+.. +
T Consensus 232 ~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~e---n~g~i~~--tg~~----s 302 (429)
T 3qe7_A 232 LPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGE---NIGVMAI--TRVY----S 302 (429)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHH---HHHHHHH--HTBC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHH---hHHHHHh--cCCc----c
Confidence 4455554445443 34455532 2478999999999999999988765322 2211111 1111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhccchhHHHHHHHHHHHHHHHHhhh
Q 008914 174 PVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLK 229 (549)
Q Consensus 174 ~~~~~~~~~~~~~l~Gi~~lllg~l-rlg~l~~fip~~Vi~Gf~~gigl~I~~~Ql~ 229 (549)
+. ....+|++.+++|++ +++.++..+|.||+.|...-.=-.|..+.++
T Consensus 303 -----r~---~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~ 351 (429)
T 3qe7_A 303 -----TW---VIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIR 351 (429)
T ss_dssp -----HH---HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hH---HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 11 356889999999987 6899999999999999654332234444444
No 3
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=39.35 E-value=19 Score=29.78 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=21.5
Q ss_pred CCCeEEEEecccccccccHHHHHHHhhhhh
Q 008914 516 RPCLIFFTFSHGIWFIISVYYFIQKFIQAT 545 (549)
Q Consensus 516 ~~~~~~~~~~~g~lFf~s~~~~~~~~~~~~ 545 (549)
.+++.+|+ .+|.+||+|..+|.+++++..
T Consensus 15 ~~~v~v~~-l~G~L~f~~a~~l~~~l~~~~ 43 (118)
T 3ny7_A 15 PDDVLVLR-VIGPLFFAAAEGLFTDLESRL 43 (118)
T ss_dssp CTTEEEEE-EESCBCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEE-EeceeEehhHHHHHHHHHHhc
Confidence 35666665 556788899999999988753
No 4
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=39.33 E-value=18 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=14.8
Q ss_pred HHHHhhhhhHHHHhccCCCc
Q 008914 128 GLYTSVIPPLIYALMGSSRE 147 (549)
Q Consensus 128 gLyss~i~~liy~lfG~s~~ 147 (549)
.+.++.+.+++|++|++-|.
T Consensus 6 ~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHhcccC
Confidence 57788899999999988663
No 5
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=36.95 E-value=18 Score=28.94 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=20.6
Q ss_pred CCCeEEEEecccccccccHHHHHHHhhhh
Q 008914 516 RPCLIFFTFSHGIWFIISVYYFIQKFIQA 544 (549)
Q Consensus 516 ~~~~~~~~~~~g~lFf~s~~~~~~~~~~~ 544 (549)
.++..+|+ .+|.+||++...|++.++..
T Consensus 14 ~g~~~v~~-l~G~L~f~~a~~~~~~l~~~ 41 (99)
T 3oiz_A 14 DGRERIYR-VEGQLFYASVEDFMAAFDFR 41 (99)
T ss_dssp TSSEEEEE-EEEEECGGGHHHHHHTCCTT
T ss_pred CCCEEEEE-EeeEEehhhHHHHHHHHhhc
Confidence 34455554 56678889999999998754
No 6
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=35.45 E-value=35 Score=28.40 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=25.3
Q ss_pred cccCCCeEEEEecccccccccHHHHHHHhhhhhc
Q 008914 513 MASRPCLIFFTFSHGIWFIISVYYFIQKFIQATD 546 (549)
Q Consensus 513 ~~~~~~~~~~~~~~g~lFf~s~~~~~~~~~~~~~ 546 (549)
..+.|++.+++. .|-+||+|...|.+.+++..+
T Consensus 10 ~~~~~~v~v~~l-~G~L~f~~a~~~~~~l~~~~~ 42 (130)
T 2kln_A 10 AKRVPGLVVYRY-DAPLCFANAEDFRRRALTVVD 42 (130)
T ss_dssp CCCSSSEEEEEC-CSCCBTTTHHHHHHHHHHHTT
T ss_pred cccCCCEEEEEE-CCceEechHHHHHHHHHHHHh
Confidence 345678888766 556888899999999988653
No 7
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=26.81 E-value=51 Score=27.35 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=21.1
Q ss_pred cCCCeEEEEecccccccccHHHHHHHhhhh
Q 008914 515 SRPCLIFFTFSHGIWFIISVYYFIQKFIQA 544 (549)
Q Consensus 515 ~~~~~~~~~~~~g~lFf~s~~~~~~~~~~~ 544 (549)
..+++.+++. +|.+||+|...|.+.+++.
T Consensus 17 ~~~~v~v~~~-~G~L~f~~a~~~~~~l~~~ 45 (130)
T 4dgh_A 17 LPRELAVYAL-EGPFFFAAAETFERVMGSI 45 (130)
T ss_dssp CCTTEEEEEC-CSSCCHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEE-eeeEeehhHHHHHHHHHHh
Confidence 3466666654 5567778999999998753
No 8
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=25.92 E-value=33 Score=29.08 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=20.9
Q ss_pred cccCCCeEEEEecccccccccHHHHHHHhhhhh
Q 008914 513 MASRPCLIFFTFSHGIWFIISVYYFIQKFIQAT 545 (549)
Q Consensus 513 ~~~~~~~~~~~~~~g~lFf~s~~~~~~~~~~~~ 545 (549)
..+.+++.+++..+ -+||+|..+|.+.+++..
T Consensus 25 ~~~~~~v~v~~~~G-~L~f~~a~~~~~~l~~~~ 56 (143)
T 3llo_A 25 VKEIPGIKIFQINA-PIYYANSDLYSSALKRKT 56 (143)
T ss_dssp CBCCTTEEEEEECS-CHHHHHHHHHHHC-----
T ss_pred CccCCCeEEEEeCC-CeEechHHHHHHHHHHHH
Confidence 34568888887765 577789999999988765
No 9
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=14.54 E-value=69 Score=26.82 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=22.2
Q ss_pred cccCC-CeEEEEecccccccccHHHHHHHhhhh
Q 008914 513 MASRP-CLIFFTFSHGIWFIISVYYFIQKFIQA 544 (549)
Q Consensus 513 ~~~~~-~~~~~~~~~g~lFf~s~~~~~~~~~~~ 544 (549)
..+.| ++.+++. +|.+||+|...|.+.+++.
T Consensus 17 ~~~~~~~i~v~~l-~G~L~f~~a~~~~~~l~~~ 48 (135)
T 4dgf_A 17 KKVVPLGVEIYEI-NGPFFFGVADRLKGVLDVI 48 (135)
T ss_dssp GSCCCTTEEEEEC-CSSBSHHHHHHHTTGGGGC
T ss_pred cccCCCCEEEEEe-eceEEehhHHHHHHHHHHh
Confidence 34566 6666654 5567788999999998754
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=13.29 E-value=1.6e+02 Score=19.22 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHh
Q 008914 486 ASVEIGLLAATVD--MLFYFQDR 506 (549)
Q Consensus 486 ~~~~~Gi~~gv~~--sl~~~~~~ 506 (549)
.|+.+|..+|+++ .+.+|.+|
T Consensus 14 AGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeehHHHHHHHHHHHHHHHHee
Confidence 3555555555443 33344444
Done!