Query 008914
Match_columns 549
No_of_seqs 328 out of 1924
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 14:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 38.9 29 0.0021 19.5 4.3 17 483-499 9-25 (32)
2 d1rh5c_ f.23.29.1 (C:) Sec-bet 9.0 1.6E+02 0.012 16.3 3.0 23 96-118 8-30 (32)
3 d1h4xa_ c.13.2.1 (A:) Anti-sig 6.7 96 0.007 22.8 1.9 23 522-544 13-35 (111)
4 d1q90g_ f.23.26.1 (G:) PetG su 6.5 2.4E+02 0.017 15.7 3.3 23 417-439 6-29 (30)
5 d1th8b_ c.13.2.1 (B:) Anti-sig 5.5 1.5E+02 0.011 21.6 2.4 29 516-545 9-37 (115)
6 d1vc1a_ c.13.2.1 (A:) Anti-sig 5.3 1.8E+02 0.013 20.8 2.9 30 515-545 10-39 (110)
7 d2a65a1 f.54.1.1 (A:5-513) Na( 3.7 7.4E+02 0.054 22.8 6.9 55 337-395 236-290 (509)
8 d1y9ia_ a.195.1.1 (A:) Low tem 3.5 2.1E+02 0.015 23.0 1.8 25 84-108 122-149 (159)
9 d1tlqa_ a.195.1.1 (A:) Hypothe 3.3 2.2E+02 0.016 22.9 1.8 25 84-108 123-149 (161)
10 d1q79a1 a.160.1.1 (A:215-364) 2.9 2.1E+02 0.016 22.7 1.2 19 211-229 25-43 (150)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.94 E-value=29 Score=19.54 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008914 483 VLFASVEIGLLAATVDM 499 (549)
Q Consensus 483 ~~~~~~~~Gi~~gv~~s 499 (549)
.+|..+..|+++|+.++
T Consensus 9 ivfialffgiavgiifa 25 (32)
T d2e74e1 9 IVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheee
Confidence 34455556666666554
No 2
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.04 E-value=1.6e+02 Score=16.32 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 008914 96 FKSDLMAGLTLASLSIPQSIGYA 118 (549)
Q Consensus 96 l~~DiiAGltv~~~~iPq~~aya 118 (549)
.+.|-+-|+|++.+.+-.-+.|+
T Consensus 8 vkpehvigvtvafviieailtyg 30 (32)
T d1rh5c_ 8 VKPEHVIGVTVAFVIIEAILTYG 30 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eccceEEEEEEehhhHHHHHhhc
Confidence 56788889999998887777764
No 3
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}
Probab=6.70 E-value=96 Score=22.77 Aligned_cols=23 Identities=17% Similarity=-0.117 Sum_probs=18.2
Q ss_pred EEecccccccccHHHHHHHhhhh
Q 008914 522 FTFSHGIWFIISVYYFIQKFIQA 544 (549)
Q Consensus 522 ~~~~~g~lFf~s~~~~~~~~~~~ 544 (549)
.....|.++|++..+|.+++++.
T Consensus 13 vv~~~G~L~~~~a~~~~~~~~~~ 35 (111)
T d1h4xa_ 13 VIRLFGELDHHAVEQIRAKISTA 35 (111)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEHHHHHHHHHHHHHH
Confidence 34566688999999999999765
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.48 E-value=2.4e+02 Score=15.72 Aligned_cols=23 Identities=26% Similarity=0.441 Sum_probs=10.0
Q ss_pred chhHHHHHH-HHHHHHHhHHHHHh
Q 008914 417 VSNIVMAIT-VLLSLELFTSLLYY 439 (549)
Q Consensus 417 ls~iv~a~~-~ll~ll~l~pl~~~ 439 (549)
++|++.|++ +-+..+|.+.++.|
T Consensus 6 l~GivlGlipiTl~Glfv~AylQY 29 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHh
Confidence 455555554 22333344444443
No 5
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.52 E-value=1.5e+02 Score=21.57 Aligned_cols=29 Identities=3% Similarity=-0.008 Sum_probs=21.5
Q ss_pred CCCeEEEEecccccccccHHHHHHHhhhhh
Q 008914 516 RPCLIFFTFSHGIWFIISVYYFIQKFIQAT 545 (549)
Q Consensus 516 ~~~~~~~~~~~g~lFf~s~~~~~~~~~~~~ 545 (549)
.+++.+++. .|.++|.+...|.+.+++..
T Consensus 9 ~~~v~vv~l-~G~L~~~~~~~~~~~l~~~~ 37 (115)
T d1th8b_ 9 KQDVLIVRL-SGELDHHTAEELREQVTDVL 37 (115)
T ss_dssp ETTEEEEEE-EEEESHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEE-EEEEEHHHHHHHHHHHHHHH
Confidence 356666655 55677789999999998764
No 6
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=5.33 E-value=1.8e+02 Score=20.81 Aligned_cols=30 Identities=0% Similarity=-0.231 Sum_probs=22.2
Q ss_pred cCCCeEEEEecccccccccHHHHHHHhhhhh
Q 008914 515 SRPCLIFFTFSHGIWFIISVYYFIQKFIQAT 545 (549)
Q Consensus 515 ~~~~~~~~~~~~g~lFf~s~~~~~~~~~~~~ 545 (549)
+.++..+++..+ .++|.+...|.+.+++..
T Consensus 10 ~~~~~~vv~l~G-~l~~~~~~~~~~~l~~~~ 39 (110)
T d1vc1a_ 10 EQDDKAIVRVQG-DIDAYNSSELKEQLRNFI 39 (110)
T ss_dssp EETTEEEEEEES-CBSTTTHHHHHHHHHHHH
T ss_pred EECCEEEEEEEE-EEEhHHHHHHHHHHHHHH
Confidence 456777765554 578889999999998753
No 7
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=3.73 E-value=7.4e+02 Score=22.84 Aligned_cols=55 Identities=9% Similarity=-0.128 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCccCCchHHHHHHHHHhHhhhccc
Q 008914 337 TGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSC 395 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~iv~~~e~~~~~~~~a~~~g~~~d~nqEL~a~G~aNi~~~lfg~ 395 (549)
+.+.+.++...+ +.++--..+..-+++..++++.|.-|+-....+.|...++..+
T Consensus 236 ~~~vW~~A~~Q~----ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~~ 290 (509)
T d2a65a1 236 DPGVWIAAVGQI----FFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 290 (509)
T ss_dssp CHHHHHHHHHHH----HHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTH
T ss_pred ChHHHHHHHHHH----hhhhcccCCceeeehhhccchhhhcccceEEEecccceeeccc
Confidence 344555555443 2333223344445666777788888988888888877665543
No 8
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=3.52 E-value=2.1e+02 Score=23.04 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=18.3
Q ss_pred cccccc-CCC--hhhhhhhHHHHHHHHH
Q 008914 84 ILNWGR-NYK--ASKFKSDLMAGLTLAS 108 (549)
Q Consensus 84 ~~~wl~-~y~--~~~l~~DiiAGltv~~ 108 (549)
+++|+. +.+ ...+..|++||+..++
T Consensus 122 ~i~~ld~~~~g~~gv~lDDivagi~Aa~ 149 (159)
T d1y9ia_ 122 ILAKLNEHDGIAVHTFLDDIVGAIAAAA 149 (159)
T ss_dssp HHHHTTCCCSSCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 466773 443 3469999999999886
No 9
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=3.35 E-value=2.2e+02 Score=22.89 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=18.2
Q ss_pred ccccccCCChh--hhhhhHHHHHHHHH
Q 008914 84 ILNWGRNYKAS--KFKSDLMAGLTLAS 108 (549)
Q Consensus 84 ~~~wl~~y~~~--~l~~DiiAGltv~~ 108 (549)
+++|+.+.+.. .+..|++||+..++
T Consensus 123 ~i~~ld~~~~g~gv~lDDivagi~A~~ 149 (161)
T d1tlqa_ 123 IIKELDESPDGIHTFLDDIVAALAAAA 149 (161)
T ss_dssp HHHHTSSSCSCCCTTHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcceeHHHHHHHHHHHH
Confidence 45666655332 48999999999886
No 10
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.85 E-value=2.1e+02 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 008914 211 AIVGFMAGAAIVIGLQQLK 229 (549)
Q Consensus 211 Vi~Gf~~gigl~I~~~Ql~ 229 (549)
-+.||.+|+.+.|+++-+=
T Consensus 25 n~~GflGGI~waILvArvC 43 (150)
T d1q79a1 25 NILGFLGGVSWAMLVARTC 43 (150)
T ss_dssp TTTTSBCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3468888999988876543
Done!