Query 008915
Match_columns 549
No_of_seqs 340 out of 1656
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 18:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0654 UbiH 2-polyprenyl-6-me 100.0 9.4E-33 2E-37 293.6 30.0 346 110-492 2-367 (387)
2 PRK08020 ubiF 2-octaprenyl-3-m 100.0 8.6E-33 1.9E-37 293.6 29.5 354 110-499 5-382 (391)
3 PRK06617 2-octaprenyl-6-methox 100.0 5.4E-33 1.2E-37 294.0 27.2 338 111-500 2-365 (374)
4 PRK08013 oxidoreductase; Provi 100.0 8.9E-33 1.9E-37 294.9 28.9 350 110-492 3-374 (400)
5 PRK08773 2-octaprenyl-3-methyl 100.0 3.3E-32 7.1E-37 289.5 30.1 341 110-491 6-373 (392)
6 PRK06185 hypothetical protein; 100.0 1.4E-31 3E-36 285.8 30.9 345 109-492 5-376 (407)
7 PRK07494 2-octaprenyl-6-methox 100.0 1.2E-31 2.6E-36 284.5 30.0 345 110-492 7-369 (388)
8 PRK05714 2-octaprenyl-3-methyl 100.0 3.3E-31 7.1E-36 283.0 32.2 354 110-500 2-387 (405)
9 TIGR01989 COQ6 Ubiquinone bios 100.0 2.4E-31 5.3E-36 287.1 30.5 358 111-500 1-435 (437)
10 PRK08850 2-octaprenyl-6-methox 100.0 6.6E-31 1.4E-35 280.8 32.9 349 110-492 4-374 (405)
11 PRK08849 2-octaprenyl-3-methyl 100.0 3.3E-31 7.1E-36 281.3 30.0 349 110-500 3-376 (384)
12 PLN00093 geranylgeranyl diphos 100.0 1.3E-29 2.9E-34 273.8 38.2 307 107-445 36-365 (450)
13 PRK07333 2-octaprenyl-6-methox 100.0 4.4E-30 9.4E-35 273.7 32.8 345 110-492 1-372 (403)
14 PRK07364 2-octaprenyl-6-methox 100.0 6.3E-30 1.4E-34 273.6 31.9 347 109-491 17-385 (415)
15 COG0644 FixC Dehydrogenases (f 100.0 4.9E-29 1.1E-33 265.9 33.8 311 109-444 2-319 (396)
16 PRK06996 hypothetical protein; 100.0 2.2E-29 4.7E-34 268.7 31.1 349 106-491 7-376 (398)
17 PRK09126 hypothetical protein; 100.0 2.3E-29 5.1E-34 267.2 29.3 358 110-501 3-383 (392)
18 TIGR02023 BchP-ChlP geranylger 100.0 2.1E-28 4.5E-33 260.2 35.7 297 111-445 1-316 (388)
19 TIGR02028 ChlP geranylgeranyl 100.0 2.5E-28 5.5E-33 260.5 34.7 340 111-493 1-364 (398)
20 TIGR01988 Ubi-OHases Ubiquinon 100.0 2.5E-28 5.4E-33 257.9 31.7 311 112-447 1-334 (385)
21 PLN02463 lycopene beta cyclase 100.0 4E-28 8.6E-33 261.5 33.1 362 108-501 26-443 (447)
22 PF01494 FAD_binding_3: FAD bi 100.0 1E-29 2.3E-34 263.6 17.4 313 110-446 1-345 (356)
23 TIGR01984 UbiH 2-polyprenyl-6- 100.0 7E-28 1.5E-32 254.9 31.2 345 112-492 1-365 (382)
24 PRK06834 hypothetical protein; 100.0 8.6E-28 1.9E-32 262.6 32.2 308 110-447 3-320 (488)
25 PRK07045 putative monooxygenas 100.0 1E-27 2.3E-32 254.6 31.3 348 110-491 5-374 (388)
26 PRK08244 hypothetical protein; 100.0 7.7E-28 1.7E-32 263.7 31.1 309 110-446 2-326 (493)
27 PRK10015 oxidoreductase; Provi 100.0 7.1E-28 1.5E-32 259.4 29.6 321 109-444 4-350 (429)
28 PRK07608 ubiquinone biosynthes 100.0 1.1E-27 2.3E-32 254.1 29.3 344 110-491 5-370 (388)
29 TIGR02032 GG-red-SF geranylger 100.0 5.5E-27 1.2E-31 237.8 30.1 286 111-421 1-294 (295)
30 PLN02697 lycopene epsilon cycl 100.0 3E-26 6.5E-31 250.8 37.2 292 109-430 107-414 (529)
31 PRK07190 hypothetical protein; 100.0 9.8E-27 2.1E-31 254.1 32.9 310 109-444 4-327 (487)
32 PRK05732 2-octaprenyl-6-methox 100.0 1.7E-26 3.6E-31 245.3 33.6 349 110-492 3-374 (395)
33 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1E-26 2.2E-31 257.5 32.8 310 109-447 9-341 (538)
34 PRK06184 hypothetical protein; 100.0 1.2E-26 2.6E-31 254.8 31.6 313 110-445 3-333 (502)
35 PRK10157 putative oxidoreducta 100.0 6.3E-27 1.4E-31 252.0 28.6 320 109-444 4-350 (428)
36 PRK08243 4-hydroxybenzoate 3-m 100.0 3.9E-26 8.6E-31 243.1 31.1 313 110-446 2-332 (392)
37 PRK11445 putative oxidoreducta 100.0 6.4E-26 1.4E-30 238.1 31.3 295 110-446 1-313 (351)
38 PRK06753 hypothetical protein; 100.0 6.1E-26 1.3E-30 239.5 30.6 305 112-449 2-323 (373)
39 PRK06475 salicylate hydroxylas 100.0 3.7E-26 8E-31 243.9 28.9 314 111-447 3-343 (400)
40 TIGR01790 carotene-cycl lycope 100.0 1.1E-25 2.4E-30 238.9 32.4 289 112-429 1-303 (388)
41 PTZ00367 squalene epoxidase; P 100.0 8.4E-26 1.8E-30 249.6 31.6 294 110-426 33-375 (567)
42 PRK07588 hypothetical protein; 99.9 2.7E-26 5.9E-31 244.0 26.0 308 112-447 2-332 (391)
43 PRK08132 FAD-dependent oxidore 99.9 4.6E-25 1E-29 244.7 34.5 314 109-447 22-354 (547)
44 PRK07538 hypothetical protein; 99.9 1.8E-25 3.9E-30 239.6 28.0 360 112-506 2-404 (413)
45 PLN02985 squalene monooxygenas 99.9 1.4E-24 3.1E-29 238.2 34.9 317 107-447 40-384 (514)
46 PRK08294 phenol 2-monooxygenas 99.9 1.5E-24 3.2E-29 243.7 34.2 314 109-444 31-392 (634)
47 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 4.4E-25 9.5E-30 235.0 28.4 310 110-446 2-332 (390)
48 PRK05868 hypothetical protein; 99.9 2E-24 4.3E-29 228.6 29.6 307 111-444 2-332 (372)
49 PRK08163 salicylate hydroxylas 99.9 1.6E-24 3.4E-29 230.5 28.9 311 110-446 4-338 (396)
50 PRK06126 hypothetical protein; 99.9 2.9E-24 6.3E-29 238.3 29.3 313 109-447 6-358 (545)
51 PRK06847 hypothetical protein; 99.9 1.1E-23 2.4E-28 222.3 30.3 308 110-447 4-334 (375)
52 PRK07236 hypothetical protein; 99.9 8.5E-24 1.8E-28 224.6 26.9 318 110-449 6-360 (386)
53 KOG3855 Monooxygenase involved 99.9 7.9E-25 1.7E-29 223.6 17.1 327 110-444 36-425 (481)
54 PLN02927 antheraxanthin epoxid 99.9 5.2E-22 1.1E-26 221.1 27.8 320 109-446 80-428 (668)
55 TIGR03219 salicylate_mono sali 99.9 2E-22 4.3E-27 216.1 23.4 320 112-448 2-357 (414)
56 PF05834 Lycopene_cycl: Lycope 99.9 1.1E-21 2.4E-26 207.7 27.9 279 112-424 1-290 (374)
57 KOG2614 Kynurenine 3-monooxyge 99.9 6.7E-21 1.5E-25 196.4 20.7 293 111-427 3-327 (420)
58 TIGR01789 lycopene_cycl lycope 99.9 1.3E-19 2.8E-24 191.7 25.8 272 112-422 1-285 (370)
59 PF04820 Trp_halogenase: Trypt 99.8 3.2E-20 7E-25 201.0 14.3 297 112-444 1-365 (454)
60 PRK08255 salicylyl-CoA 5-hydro 99.8 1.4E-17 3E-22 191.4 22.9 294 112-443 2-318 (765)
61 KOG1298 Squalene monooxygenase 99.8 8.7E-17 1.9E-21 163.5 23.9 297 107-422 42-360 (509)
62 PRK04176 ribulose-1,5-biphosph 99.4 1.1E-11 2.3E-16 124.9 16.2 133 110-268 25-180 (257)
63 TIGR00292 thiazole biosynthesi 99.3 2.4E-11 5.3E-16 122.0 16.3 132 110-267 21-176 (254)
64 PF01266 DAO: FAD dependent ox 99.3 4.6E-10 1E-14 116.4 22.5 68 200-268 142-211 (358)
65 PF01946 Thi4: Thi4 family; PD 99.3 2.8E-11 6E-16 116.4 10.6 131 110-266 17-170 (230)
66 PF08491 SE: Squalene epoxidas 99.3 2.3E-10 5E-15 114.5 17.4 176 249-443 1-184 (276)
67 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.8E-10 3.8E-15 110.3 14.8 132 110-267 30-184 (262)
68 TIGR01377 soxA_mon sarcosine o 99.2 7.1E-09 1.5E-13 109.6 28.9 71 200-271 140-211 (380)
69 PRK13369 glycerol-3-phosphate 99.2 6.1E-09 1.3E-13 114.9 29.4 67 201-267 151-222 (502)
70 COG2081 Predicted flavoprotein 99.2 1.8E-10 3.9E-15 119.5 14.2 157 110-270 3-187 (408)
71 PRK12266 glpD glycerol-3-phosp 99.2 1.1E-08 2.3E-13 113.1 27.7 66 201-266 151-222 (508)
72 KOG2415 Electron transfer flav 99.1 1.1E-08 2.4E-13 105.7 20.8 304 108-430 74-426 (621)
73 TIGR01373 soxB sarcosine oxida 99.1 2.9E-08 6.3E-13 106.3 24.5 69 201-270 179-250 (407)
74 COG0579 Predicted dehydrogenas 99.0 5.9E-09 1.3E-13 111.1 17.0 159 110-271 3-222 (429)
75 PRK11259 solA N-methyltryptoph 99.0 8.7E-09 1.9E-13 108.8 17.9 61 201-262 145-205 (376)
76 PF03486 HI0933_like: HI0933-l 99.0 2.1E-09 4.6E-14 115.0 13.1 148 111-261 1-166 (409)
77 PRK05192 tRNA uridine 5-carbox 99.0 5.6E-09 1.2E-13 115.7 15.6 145 110-261 4-157 (618)
78 PRK11728 hydroxyglutarate oxid 99.0 1.7E-08 3.6E-13 107.8 18.7 70 200-270 144-214 (393)
79 TIGR01320 mal_quin_oxido malat 99.0 3.2E-08 6.9E-13 108.5 19.4 71 200-270 173-250 (483)
80 PRK05257 malate:quinone oxidor 98.9 1.2E-08 2.6E-13 112.0 15.6 71 200-270 178-256 (494)
81 PF12831 FAD_oxidored: FAD dep 98.9 2.3E-10 5.1E-15 123.6 1.2 149 112-270 1-158 (428)
82 PRK01747 mnmC bifunctional tRN 98.9 1.6E-08 3.5E-13 115.2 15.1 61 201-262 404-464 (662)
83 PRK12409 D-amino acid dehydrog 98.9 3.3E-08 7.2E-13 105.9 16.3 67 202-268 194-266 (410)
84 PTZ00383 malate:quinone oxidor 98.9 8E-08 1.7E-12 105.4 18.5 71 200-271 206-284 (497)
85 PRK00711 D-amino acid dehydrog 98.9 8.3E-07 1.8E-11 95.2 25.8 67 201-268 197-265 (416)
86 PRK11101 glpA sn-glycerol-3-ph 98.9 5.1E-08 1.1E-12 108.6 16.9 69 200-268 144-219 (546)
87 PF01134 GIDA: Glucose inhibit 98.8 4.1E-08 8.9E-13 103.6 14.7 138 112-259 1-150 (392)
88 PLN02464 glycerol-3-phosphate 98.8 7.7E-07 1.7E-11 100.7 25.6 68 201-268 228-304 (627)
89 PF13738 Pyr_redox_3: Pyridine 98.8 1.5E-08 3.2E-13 97.5 10.1 134 114-262 1-139 (203)
90 TIGR03329 Phn_aa_oxid putative 98.8 4.3E-08 9.2E-13 107.0 14.4 61 200-262 178-238 (460)
91 COG0578 GlpA Glycerol-3-phosph 98.8 1.2E-06 2.5E-11 95.7 24.1 68 200-267 159-232 (532)
92 KOG2844 Dimethylglycine dehydr 98.8 2.9E-07 6.3E-12 100.3 18.4 202 200-430 182-402 (856)
93 PRK13339 malate:quinone oxidor 98.8 4.2E-07 9.2E-12 99.6 19.6 71 200-270 179-257 (497)
94 TIGR01292 TRX_reduct thioredox 98.7 1.4E-07 3E-12 96.0 14.0 111 111-261 1-112 (300)
95 KOG2820 FAD-dependent oxidored 98.7 1.5E-07 3.3E-12 95.5 13.2 150 109-260 6-211 (399)
96 TIGR03364 HpnW_proposed FAD de 98.7 2.2E-07 4.8E-12 97.9 14.1 58 200-262 140-198 (365)
97 PLN02661 Putative thiazole syn 98.7 4.6E-07 9.9E-12 94.5 15.6 130 110-265 92-248 (357)
98 TIGR00275 flavoprotein, HI0933 98.7 2E-07 4.2E-12 100.0 12.8 154 114-270 1-180 (400)
99 PRK15317 alkyl hydroperoxide r 98.6 4.1E-07 9E-12 100.7 14.7 113 108-261 209-322 (517)
100 PRK07804 L-aspartate oxidase; 98.6 7.8E-07 1.7E-11 99.1 16.7 58 205-262 144-211 (541)
101 PRK06481 fumarate reductase fl 98.6 9E-07 2E-11 97.8 16.9 58 205-262 190-252 (506)
102 TIGR00136 gidA glucose-inhibit 98.6 3.9E-07 8.4E-12 101.1 12.9 141 111-261 1-154 (617)
103 TIGR01812 sdhA_frdA_Gneg succi 98.6 9.9E-07 2.2E-11 98.8 16.1 59 205-263 129-193 (566)
104 PRK06854 adenylylsulfate reduc 98.5 1.7E-06 3.8E-11 97.6 16.9 153 110-262 11-196 (608)
105 TIGR00551 nadB L-aspartate oxi 98.5 1.5E-06 3.2E-11 95.7 15.9 60 204-263 127-191 (488)
106 PRK09231 fumarate reductase fl 98.5 1.3E-06 2.8E-11 98.1 15.6 59 205-263 133-198 (582)
107 PRK05945 sdhA succinate dehydr 98.5 1.2E-06 2.5E-11 98.4 14.8 59 205-263 135-199 (575)
108 PRK08274 tricarballylate dehyd 98.5 1.7E-06 3.7E-11 94.5 15.7 58 205-262 131-193 (466)
109 TIGR01813 flavo_cyto_c flavocy 98.5 1.3E-06 2.8E-11 94.6 14.5 60 203-262 128-193 (439)
110 TIGR03140 AhpF alkyl hydropero 98.5 1.3E-06 2.8E-11 96.7 14.6 113 108-261 210-323 (515)
111 PF00890 FAD_binding_2: FAD bi 98.5 1.3E-06 2.8E-11 93.8 14.2 64 204-267 140-210 (417)
112 PRK07121 hypothetical protein; 98.5 3.7E-06 8.1E-11 92.6 17.6 59 204-262 176-240 (492)
113 PTZ00139 Succinate dehydrogena 98.5 2.2E-06 4.7E-11 96.9 15.7 58 205-262 166-230 (617)
114 TIGR01176 fum_red_Fp fumarate 98.5 3.3E-06 7.3E-11 94.7 16.3 59 205-263 132-197 (580)
115 PRK09078 sdhA succinate dehydr 98.5 2.8E-06 6.2E-11 95.7 15.7 57 206-262 150-213 (598)
116 COG0492 TrxB Thioredoxin reduc 98.4 2.4E-06 5.2E-11 88.1 13.5 112 110-262 3-116 (305)
117 PRK06069 sdhA succinate dehydr 98.4 2.7E-06 5.9E-11 95.5 15.1 58 206-263 138-202 (577)
118 PLN00128 Succinate dehydrogena 98.4 3.7E-06 8E-11 95.2 15.7 58 205-262 187-251 (635)
119 PLN02172 flavin-containing mon 98.4 2.9E-06 6.3E-11 92.6 14.2 145 110-261 10-173 (461)
120 COG0665 DadA Glycine/D-amino a 98.4 4.2E-06 9E-11 88.6 15.0 68 200-268 151-220 (387)
121 PRK07233 hypothetical protein; 98.4 0.00024 5.2E-09 76.3 28.8 55 206-260 199-253 (434)
122 PRK06175 L-aspartate oxidase; 98.4 3.8E-06 8.3E-11 91.0 14.8 58 205-262 128-190 (433)
123 PRK06452 sdhA succinate dehydr 98.4 1.1E-05 2.4E-10 90.4 17.3 59 205-263 136-200 (566)
124 PRK05335 tRNA (uracil-5-)-meth 98.4 1.8E-06 4E-11 92.1 10.2 113 111-232 3-126 (436)
125 PRK07573 sdhA succinate dehydr 98.3 7.4E-06 1.6E-10 93.0 15.5 55 208-262 173-233 (640)
126 PRK06263 sdhA succinate dehydr 98.3 7.5E-06 1.6E-10 91.3 15.0 58 205-262 134-198 (543)
127 PRK08401 L-aspartate oxidase; 98.3 8.7E-06 1.9E-10 89.1 15.1 58 205-264 120-178 (466)
128 PRK08205 sdhA succinate dehydr 98.3 1.1E-05 2.3E-10 90.8 16.0 59 205-263 140-208 (583)
129 PRK08958 sdhA succinate dehydr 98.3 1E-05 2.2E-10 91.0 15.8 59 205-263 143-208 (588)
130 PRK07057 sdhA succinate dehydr 98.3 1.4E-05 3E-10 90.0 16.3 59 205-263 148-213 (591)
131 PLN02815 L-aspartate oxidase 98.3 1.1E-05 2.4E-10 90.7 15.1 158 104-262 23-223 (594)
132 PRK08275 putative oxidoreducta 98.3 1.2E-05 2.7E-10 89.8 15.2 58 206-263 138-202 (554)
133 TIGR03143 AhpF_homolog putativ 98.3 9.1E-06 2E-10 90.9 14.1 110 110-261 4-114 (555)
134 PRK08071 L-aspartate oxidase; 98.2 1.7E-05 3.7E-10 87.7 15.3 57 205-262 130-191 (510)
135 PRK09897 hypothetical protein; 98.2 1.3E-05 2.9E-10 88.6 14.1 149 111-261 2-166 (534)
136 PRK07803 sdhA succinate dehydr 98.2 1.9E-05 4.1E-10 89.5 15.6 36 110-145 8-44 (626)
137 PRK12416 protoporphyrinogen ox 98.2 0.0012 2.6E-08 72.0 29.3 39 220-258 239-277 (463)
138 PRK08626 fumarate reductase fl 98.2 2.2E-05 4.8E-10 89.4 15.9 58 206-263 159-222 (657)
139 TIGR01424 gluta_reduc_2 glutat 98.2 9.3E-06 2E-10 88.3 12.3 137 110-261 2-142 (446)
140 PRK12842 putative succinate de 98.2 1.6E-05 3.4E-10 89.3 14.0 57 206-262 215-276 (574)
141 PRK06134 putative FAD-binding 98.2 1.4E-05 3.1E-10 89.8 13.4 59 204-262 216-279 (581)
142 PTZ00058 glutathione reductase 98.2 9.4E-06 2E-10 90.6 11.8 39 109-147 47-86 (561)
143 PRK12845 3-ketosteroid-delta-1 98.2 3.4E-05 7.3E-10 86.4 15.9 58 207-264 219-281 (564)
144 PRK08641 sdhA succinate dehydr 98.2 3.3E-05 7.1E-10 87.0 15.6 36 110-145 3-39 (589)
145 TIGR01350 lipoamide_DH dihydro 98.2 3.9E-05 8.5E-10 83.6 15.5 59 206-264 212-272 (461)
146 PRK05249 soluble pyridine nucl 98.1 2.5E-05 5.4E-10 85.2 13.3 137 110-261 5-149 (461)
147 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 1.5E-05 3.2E-10 85.7 10.8 132 111-267 1-145 (433)
148 PRK07843 3-ketosteroid-delta-1 98.1 2.1E-05 4.5E-10 88.1 12.2 56 207-262 210-270 (557)
149 TIGR01421 gluta_reduc_1 glutat 98.1 2.3E-05 5E-10 85.4 12.2 38 110-147 2-40 (450)
150 PRK12834 putative FAD-binding 98.1 6.9E-05 1.5E-09 83.8 16.3 33 110-142 4-37 (549)
151 PLN02612 phytoene desaturase 98.1 0.0014 3E-08 73.6 26.6 53 207-259 310-364 (567)
152 PRK07395 L-aspartate oxidase; 98.1 3.2E-05 6.9E-10 86.4 13.4 57 205-261 134-197 (553)
153 PRK06416 dihydrolipoamide dehy 98.1 4.4E-05 9.6E-10 83.3 14.3 136 110-261 4-146 (462)
154 COG2072 TrkA Predicted flavopr 98.1 1.9E-05 4.1E-10 85.8 11.3 131 108-261 6-144 (443)
155 PRK10262 thioredoxin reductase 98.1 5.4E-05 1.2E-09 78.5 14.3 111 110-261 6-117 (321)
156 PRK05976 dihydrolipoamide dehy 98.1 2.4E-05 5.3E-10 85.7 12.2 140 110-261 4-154 (472)
157 PRK12839 hypothetical protein; 98.1 7.2E-05 1.6E-09 83.9 16.0 60 203-262 212-277 (572)
158 PRK06467 dihydrolipoamide dehy 98.1 1.4E-05 3.1E-10 87.5 9.8 137 110-261 4-148 (471)
159 PRK12835 3-ketosteroid-delta-1 98.1 8.7E-05 1.9E-09 83.5 16.0 37 109-145 10-47 (584)
160 PRK09077 L-aspartate oxidase; 98.0 9.4E-05 2E-09 82.4 16.0 59 205-263 138-209 (536)
161 PRK07512 L-aspartate oxidase; 98.0 6.1E-05 1.3E-09 83.5 14.5 58 205-262 136-198 (513)
162 PRK14694 putative mercuric red 98.0 4E-05 8.7E-10 83.9 12.9 38 109-146 5-43 (468)
163 PRK12844 3-ketosteroid-delta-1 98.0 6E-05 1.3E-09 84.4 14.4 57 206-262 209-270 (557)
164 PF06039 Mqo: Malate:quinone o 98.0 0.00012 2.6E-09 78.2 15.7 72 199-270 175-254 (488)
165 TIGR01811 sdhA_Bsu succinate d 98.0 7.4E-05 1.6E-09 84.4 14.6 30 113-142 1-31 (603)
166 PRK06116 glutathione reductase 98.0 4.7E-05 1E-09 82.9 12.5 36 110-145 4-40 (450)
167 PRK12837 3-ketosteroid-delta-1 98.0 2.8E-05 6.1E-10 86.1 10.8 37 109-145 6-42 (513)
168 PRK12843 putative FAD-binding 98.0 5.6E-05 1.2E-09 85.0 13.1 59 206-264 222-285 (578)
169 PF00743 FMO-like: Flavin-bind 98.0 5.9E-05 1.3E-09 83.7 12.9 137 112-261 3-150 (531)
170 PRK06370 mercuric reductase; V 98.0 5.4E-05 1.2E-09 82.7 12.5 38 110-147 5-43 (463)
171 PF00070 Pyr_redox: Pyridine n 98.0 0.00012 2.5E-09 60.1 11.2 78 113-245 2-80 (80)
172 PLN02507 glutathione reductase 97.9 7.9E-05 1.7E-09 82.3 12.8 33 108-140 23-56 (499)
173 TIGR02061 aprA adenosine phosp 97.9 0.0002 4.3E-09 80.8 15.9 56 206-261 127-191 (614)
174 KOG1399 Flavin-containing mono 97.9 8.6E-05 1.9E-09 80.4 12.4 139 110-261 6-153 (448)
175 TIGR03452 mycothione_red mycot 97.9 4.6E-05 1E-09 83.1 10.4 37 110-147 2-38 (452)
176 TIGR02485 CobZ_N-term precorri 97.9 0.00016 3.4E-09 78.4 14.3 59 205-263 123-185 (432)
177 PTZ00306 NADH-dependent fumara 97.9 0.00021 4.6E-09 86.4 16.7 37 109-145 408-445 (1167)
178 PRK06327 dihydrolipoamide dehy 97.9 0.0001 2.2E-09 80.9 12.6 31 110-140 4-35 (475)
179 PRK06115 dihydrolipoamide dehy 97.9 8.5E-05 1.8E-09 81.3 11.9 37 110-146 3-41 (466)
180 KOG0042 Glycerol-3-phosphate d 97.9 0.00016 3.4E-09 77.9 13.3 205 205-433 224-453 (680)
181 PLN02546 glutathione reductase 97.9 0.00017 3.7E-09 80.6 14.1 33 108-140 77-110 (558)
182 COG1053 SdhA Succinate dehydro 97.9 8.9E-05 1.9E-09 82.6 11.7 56 206-261 139-202 (562)
183 KOG2853 Possible oxidoreductas 97.8 0.00035 7.5E-09 71.5 14.3 71 202-273 240-333 (509)
184 PRK04965 NADH:flavorubredoxin 97.8 0.00023 5E-09 75.6 14.0 105 111-269 142-249 (377)
185 COG3380 Predicted NAD/FAD-depe 97.8 3.5E-05 7.6E-10 76.5 7.0 132 112-256 3-155 (331)
186 PRK13748 putative mercuric red 97.8 0.00015 3.2E-09 81.3 12.8 37 110-146 98-135 (561)
187 PF13454 NAD_binding_9: FAD-NA 97.8 0.00033 7.1E-09 65.1 13.0 42 218-259 113-155 (156)
188 PRK08010 pyridine nucleotide-d 97.8 0.00022 4.7E-09 77.5 13.4 33 110-142 3-36 (441)
189 COG1233 Phytoene dehydrogenase 97.8 1.7E-05 3.8E-10 87.2 4.7 54 206-259 225-279 (487)
190 PRK07251 pyridine nucleotide-d 97.8 0.0002 4.4E-09 77.7 12.4 33 110-142 3-36 (438)
191 KOG2665 Predicted FAD-dependen 97.8 0.00019 4.1E-09 72.7 10.8 71 201-271 192-268 (453)
192 PRK13800 putative oxidoreducta 97.8 0.00041 8.9E-09 82.0 15.6 35 109-143 12-47 (897)
193 PRK07818 dihydrolipoamide dehy 97.8 0.0003 6.4E-09 77.0 13.3 37 110-146 4-41 (466)
194 PRK06292 dihydrolipoamide dehy 97.7 0.00019 4.1E-09 78.3 11.3 36 110-145 3-39 (460)
195 PRK07845 flavoprotein disulfid 97.7 0.00029 6.4E-09 77.1 12.8 139 111-261 2-151 (466)
196 PRK07846 mycothione reductase; 97.7 0.00022 4.7E-09 77.9 11.2 37 110-147 1-37 (451)
197 PRK11883 protoporphyrinogen ox 97.7 0.00063 1.4E-08 73.6 14.6 40 221-260 235-274 (451)
198 COG0445 GidA Flavin-dependent 97.7 6.3E-05 1.4E-09 81.3 6.3 138 110-260 4-157 (621)
199 PF13434 K_oxygenase: L-lysine 97.7 3.8E-05 8.2E-10 80.6 4.3 141 110-260 2-158 (341)
200 PF07992 Pyr_redox_2: Pyridine 97.6 4.6E-05 1E-09 72.8 4.0 113 112-261 1-122 (201)
201 TIGR02053 MerA mercuric reduct 97.6 0.00018 3.9E-09 78.6 8.8 36 111-146 1-37 (463)
202 COG1231 Monoamine oxidase [Ami 97.6 0.00076 1.7E-08 71.9 13.0 48 210-257 210-258 (450)
203 TIGR01372 soxA sarcosine oxida 97.6 0.00065 1.4E-08 81.1 13.9 109 109-261 162-286 (985)
204 PRK09754 phenylpropionate diox 97.6 0.00072 1.6E-08 72.4 13.0 96 112-262 146-242 (396)
205 COG0029 NadB Aspartate oxidase 97.6 0.00049 1.1E-08 73.9 11.3 147 112-264 9-199 (518)
206 COG3634 AhpF Alkyl hydroperoxi 97.6 0.00012 2.7E-09 74.9 6.1 110 110-260 211-324 (520)
207 PRK05249 soluble pyridine nucl 97.5 0.0011 2.5E-08 72.2 14.0 97 112-263 177-274 (461)
208 PTZ00363 rab-GDP dissociation 97.5 7.6E-05 1.6E-09 81.0 4.7 54 207-260 234-289 (443)
209 TIGR02730 carot_isom carotene 97.5 8.7E-05 1.9E-09 81.8 4.8 62 206-267 230-292 (493)
210 TIGR01438 TGR thioredoxin and 97.5 0.0011 2.4E-08 73.0 13.0 32 110-141 2-34 (484)
211 TIGR01423 trypano_reduc trypan 97.5 0.00082 1.8E-08 74.0 11.8 32 110-141 3-36 (486)
212 PF13450 NAD_binding_8: NAD(P) 97.5 0.00016 3.5E-09 57.6 4.4 31 115-145 1-32 (68)
213 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00012 2.6E-09 74.8 4.0 33 111-143 1-35 (296)
214 PRK14727 putative mercuric red 97.4 0.0013 2.8E-08 72.3 12.3 37 109-145 15-53 (479)
215 PTZ00052 thioredoxin reductase 97.4 0.0015 3.2E-08 72.3 12.7 32 110-141 5-37 (499)
216 PTZ00153 lipoamide dehydrogena 97.4 0.0013 2.9E-08 74.7 12.4 39 108-146 114-155 (659)
217 TIGR02352 thiamin_ThiO glycine 97.3 0.014 3E-07 60.3 18.4 63 200-263 132-195 (337)
218 PRK06416 dihydrolipoamide dehy 97.3 0.0028 6E-08 69.3 13.7 97 112-263 174-274 (462)
219 COG1249 Lpd Pyruvate/2-oxoglut 97.3 0.0018 3.8E-08 70.5 11.8 38 110-147 4-43 (454)
220 PRK06912 acoL dihydrolipoamide 97.3 0.0023 5E-08 69.9 12.8 36 112-147 2-38 (458)
221 PRK12779 putative bifunctional 97.3 0.00064 1.4E-08 80.4 8.7 98 110-261 306-404 (944)
222 PRK06116 glutathione reductase 97.3 0.0034 7.3E-08 68.4 13.5 97 112-263 169-267 (450)
223 PRK09564 coenzyme A disulfide 97.3 0.0018 3.8E-08 70.3 11.3 108 112-261 2-115 (444)
224 PRK07845 flavoprotein disulfid 97.2 0.0053 1.2E-07 67.3 13.9 97 112-263 179-276 (466)
225 TIGR02733 desat_CrtD C-3',4' d 97.2 0.00037 7.9E-09 76.8 4.7 55 206-260 233-293 (492)
226 TIGR03197 MnmC_Cterm tRNA U-34 97.2 0.019 4.2E-07 60.9 17.6 62 200-262 130-191 (381)
227 PLN02507 glutathione reductase 97.1 0.0062 1.3E-07 67.4 14.0 97 112-263 205-302 (499)
228 TIGR01424 gluta_reduc_2 glutat 97.1 0.0061 1.3E-07 66.4 13.7 97 112-263 168-265 (446)
229 PRK12831 putative oxidoreducta 97.1 0.001 2.2E-08 72.9 7.5 36 110-145 140-176 (464)
230 KOG2311 NAD/FAD-utilizing prot 97.1 0.0011 2.4E-08 70.5 7.1 138 108-260 26-185 (679)
231 TIGR03169 Nterm_to_SelD pyridi 97.1 0.0027 5.8E-08 66.9 10.2 46 213-261 62-107 (364)
232 TIGR01421 gluta_reduc_1 glutat 97.1 0.0069 1.5E-07 66.1 13.6 98 112-264 168-268 (450)
233 PRK07251 pyridine nucleotide-d 97.1 0.0075 1.6E-07 65.4 13.7 96 112-263 159-255 (438)
234 PRK07818 dihydrolipoamide dehy 97.1 0.0068 1.5E-07 66.3 13.4 97 112-263 174-275 (466)
235 PRK09754 phenylpropionate diox 97.1 0.0027 5.9E-08 67.9 10.1 106 111-261 4-112 (396)
236 PRK13977 myosin-cross-reactive 97.0 0.011 2.4E-07 65.7 14.8 56 205-260 226-292 (576)
237 PRK02106 choline dehydrogenase 97.0 0.00062 1.3E-08 76.3 4.9 35 109-143 4-40 (560)
238 PTZ00318 NADH dehydrogenase-li 97.0 0.0043 9.3E-08 67.1 11.0 107 110-261 10-125 (424)
239 TIGR02053 MerA mercuric reduct 97.0 0.0087 1.9E-07 65.4 13.5 98 111-263 167-268 (463)
240 TIGR02374 nitri_red_nirB nitri 97.0 0.006 1.3E-07 71.2 12.8 104 112-269 142-248 (785)
241 PRK06912 acoL dihydrolipoamide 97.0 0.0092 2E-07 65.2 13.4 96 112-263 172-270 (458)
242 PRK06370 mercuric reductase; V 97.0 0.01 2.3E-07 64.8 13.8 97 112-263 173-273 (463)
243 TIGR02734 crtI_fam phytoene de 97.0 0.00063 1.4E-08 75.1 4.2 61 206-266 220-281 (502)
244 PRK06115 dihydrolipoamide dehy 96.9 0.011 2.4E-07 64.8 13.7 97 112-263 176-278 (466)
245 PRK07846 mycothione reductase; 96.9 0.0078 1.7E-07 65.7 12.3 96 112-263 168-264 (451)
246 KOG1335 Dihydrolipoamide dehyd 96.9 0.0028 6.1E-08 66.0 8.0 35 109-143 38-73 (506)
247 COG1249 Lpd Pyruvate/2-oxoglut 96.9 0.011 2.5E-07 64.3 13.0 96 113-263 176-274 (454)
248 TIGR00031 UDP-GALP_mutase UDP- 96.9 0.001 2.3E-08 70.7 4.9 35 111-145 2-37 (377)
249 PRK06327 dihydrolipoamide dehy 96.9 0.013 2.7E-07 64.5 13.5 97 112-263 185-286 (475)
250 PTZ00052 thioredoxin reductase 96.9 0.013 2.7E-07 64.9 13.5 97 112-264 184-281 (499)
251 PRK05976 dihydrolipoamide dehy 96.9 0.013 2.8E-07 64.3 13.5 97 112-263 182-283 (472)
252 PLN02576 protoporphyrinogen ox 96.9 0.0012 2.7E-08 72.6 5.3 38 108-145 10-49 (496)
253 PRK14989 nitrite reductase sub 96.9 0.01 2.2E-07 69.7 13.0 104 112-269 147-255 (847)
254 PRK12778 putative bifunctional 96.8 0.002 4.4E-08 74.8 7.2 35 110-144 431-466 (752)
255 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.013 2.8E-07 63.3 12.7 102 112-269 139-243 (427)
256 PRK08010 pyridine nucleotide-d 96.8 0.018 3.9E-07 62.5 13.7 96 112-263 160-256 (441)
257 PRK09564 coenzyme A disulfide 96.8 0.027 5.9E-07 61.0 14.8 103 112-269 151-256 (444)
258 COG0562 Glf UDP-galactopyranos 96.8 0.0016 3.4E-08 66.5 4.6 36 110-145 1-37 (374)
259 PRK09853 putative selenate red 96.7 0.0091 2E-07 70.5 11.3 35 110-144 539-574 (1019)
260 PRK14694 putative mercuric red 96.7 0.022 4.9E-07 62.4 13.8 95 112-263 180-275 (468)
261 PRK13512 coenzyme A disulfide 96.7 0.011 2.4E-07 64.2 11.3 109 112-261 3-117 (438)
262 PRK14727 putative mercuric red 96.7 0.02 4.4E-07 62.9 13.4 96 112-264 190-286 (479)
263 PRK07208 hypothetical protein; 96.7 0.0018 3.9E-08 71.0 5.0 56 206-261 219-280 (479)
264 TIGR01423 trypano_reduc trypan 96.7 0.021 4.6E-07 62.9 13.2 56 208-263 234-290 (486)
265 COG3075 GlpB Anaerobic glycero 96.7 0.002 4.4E-08 65.9 4.6 34 110-143 2-36 (421)
266 TIGR01438 TGR thioredoxin and 96.7 0.022 4.8E-07 62.8 13.3 96 112-263 182-281 (484)
267 COG0446 HcaD Uncharacterized N 96.7 0.015 3.3E-07 61.4 11.7 97 111-261 137-237 (415)
268 TIGR02462 pyranose_ox pyranose 96.6 0.0019 4.2E-08 71.7 4.8 35 111-145 1-36 (544)
269 TIGR03862 flavo_PP4765 unchara 96.6 0.012 2.5E-07 62.7 10.4 68 202-271 83-162 (376)
270 PRK12775 putative trifunctiona 96.6 0.0031 6.8E-08 75.2 6.8 36 110-145 430-466 (1006)
271 TIGR02374 nitri_red_nirB nitri 96.6 0.008 1.7E-07 70.2 10.0 44 216-261 65-108 (785)
272 PRK13748 putative mercuric red 96.6 0.024 5.1E-07 63.6 13.5 95 112-263 272-367 (561)
273 TIGR03452 mycothione_red mycot 96.6 0.032 6.9E-07 60.9 13.6 96 112-263 171-267 (452)
274 PRK04965 NADH:flavorubredoxin 96.6 0.019 4.2E-07 60.9 11.7 105 111-261 3-111 (377)
275 PRK05329 anaerobic glycerol-3- 96.5 0.0025 5.4E-08 68.9 4.8 55 206-260 260-317 (422)
276 PRK06467 dihydrolipoamide dehy 96.5 0.027 5.9E-07 61.8 12.7 97 112-264 176-277 (471)
277 TIGR00562 proto_IX_ox protopor 96.5 0.0027 5.8E-08 69.1 4.8 41 220-260 238-278 (462)
278 COG2509 Uncharacterized FAD-de 96.5 0.052 1.1E-06 58.1 14.0 57 206-262 174-231 (486)
279 PRK13512 coenzyme A disulfide 96.5 0.026 5.6E-07 61.4 12.1 98 112-268 150-250 (438)
280 TIGR03378 glycerol3P_GlpB glyc 96.5 0.0038 8.2E-08 67.1 5.4 62 206-267 264-330 (419)
281 COG3486 IucD Lysine/ornithine 96.4 0.0095 2.1E-07 62.8 7.7 137 110-261 5-157 (436)
282 KOG0029 Amine oxidase [Seconda 96.3 0.0043 9.3E-08 68.4 5.0 36 109-144 14-50 (501)
283 COG2303 BetA Choline dehydroge 96.3 0.0034 7.3E-08 70.1 4.3 35 108-142 5-40 (542)
284 PRK14989 nitrite reductase sub 96.3 0.022 4.7E-07 66.9 10.7 104 112-261 5-113 (847)
285 TIGR01810 betA choline dehydro 96.3 0.0033 7.1E-08 70.1 3.8 32 112-143 1-34 (532)
286 PLN02785 Protein HOTHEAD 96.2 0.0042 9.2E-08 69.9 4.6 35 108-143 53-88 (587)
287 PTZ00058 glutathione reductase 96.2 0.059 1.3E-06 60.5 13.6 97 112-263 239-338 (561)
288 KOG1238 Glucose dehydrogenase/ 96.2 0.0049 1.1E-07 68.4 4.9 38 107-144 54-93 (623)
289 PLN02268 probable polyamine ox 96.2 0.0049 1.1E-07 66.6 4.8 40 218-257 209-248 (435)
290 PTZ00318 NADH dehydrogenase-li 96.1 0.041 8.8E-07 59.5 11.3 49 208-260 231-279 (424)
291 COG4529 Uncharacterized protei 96.1 0.062 1.3E-06 58.1 12.3 46 221-266 122-169 (474)
292 TIGR02731 phytoene_desat phyto 96.1 0.0064 1.4E-07 66.2 4.8 55 207-261 215-276 (453)
293 COG3573 Predicted oxidoreducta 96.1 0.0063 1.4E-07 62.4 4.3 34 110-143 5-39 (552)
294 PLN02676 polyamine oxidase 96.0 0.0075 1.6E-07 66.5 5.1 41 220-260 245-285 (487)
295 PRK06292 dihydrolipoamide dehy 96.0 0.089 1.9E-06 57.4 13.4 96 112-263 171-270 (460)
296 KOG2852 Possible oxidoreductas 96.0 0.027 5.9E-07 56.9 8.1 62 200-262 142-209 (380)
297 TIGR03315 Se_ygfK putative sel 96.0 0.0085 1.8E-07 70.9 5.4 36 110-145 537-573 (1012)
298 COG1148 HdrA Heterodisulfide r 95.9 0.0079 1.7E-07 64.5 4.5 35 111-145 125-160 (622)
299 COG1206 Gid NAD(FAD)-utilizing 95.9 0.019 4.2E-07 58.9 6.9 108 112-231 5-126 (439)
300 COG3349 Uncharacterized conser 95.9 0.0082 1.8E-07 65.1 4.5 34 112-145 2-36 (485)
301 PF00996 GDI: GDP dissociation 95.9 0.0096 2.1E-07 64.4 5.0 37 109-145 3-40 (438)
302 TIGR03377 glycerol3P_GlpA glyc 95.8 1.3 2.8E-05 49.2 21.4 70 200-269 123-199 (516)
303 PLN02546 glutathione reductase 95.8 0.11 2.4E-06 58.3 12.9 98 112-264 254-353 (558)
304 PLN02568 polyamine oxidase 95.7 0.013 2.9E-07 65.3 5.2 50 207-258 244-293 (539)
305 TIGR01316 gltA glutamate synth 95.6 0.028 6E-07 61.3 7.4 35 110-144 133-168 (449)
306 TIGR02732 zeta_caro_desat caro 95.6 0.012 2.7E-07 64.5 4.6 55 207-261 221-284 (474)
307 PRK05675 sdhA succinate dehydr 95.6 0.14 3E-06 57.7 13.0 59 205-263 126-191 (570)
308 KOG0405 Pyridine nucleotide-di 95.6 0.12 2.7E-06 53.5 11.2 134 107-262 17-166 (478)
309 PTZ00153 lipoamide dehydrogena 95.5 0.16 3.6E-06 58.0 13.0 97 112-263 314-429 (659)
310 PRK12769 putative oxidoreducta 95.4 0.024 5.2E-07 64.8 6.4 36 110-145 327-363 (654)
311 PLN02328 lysine-specific histo 95.4 0.019 4.2E-07 66.5 5.2 36 109-144 237-273 (808)
312 PRK12810 gltD glutamate syntha 95.3 0.022 4.8E-07 62.5 5.4 36 110-145 143-179 (471)
313 PRK11749 dihydropyrimidine deh 95.3 0.021 4.7E-07 62.3 5.3 35 110-144 140-175 (457)
314 COG1252 Ndh NADH dehydrogenase 95.3 0.066 1.4E-06 57.3 8.7 58 206-267 210-269 (405)
315 PLN02529 lysine-specific histo 95.3 0.021 4.5E-07 65.8 5.2 38 219-257 366-403 (738)
316 PRK10262 thioredoxin reductase 95.3 0.16 3.5E-06 52.6 11.4 93 112-261 148-248 (321)
317 TIGR01318 gltD_gamma_fam gluta 95.3 0.037 8.1E-07 60.7 6.9 36 110-145 141-177 (467)
318 KOG4716 Thioredoxin reductase 95.2 0.025 5.3E-07 58.3 4.6 34 108-141 17-51 (503)
319 PLN02852 ferredoxin-NADP+ redu 95.2 0.033 7.2E-07 61.3 6.1 36 110-145 26-64 (491)
320 KOG4254 Phytoene desaturase [C 95.1 0.016 3.5E-07 61.7 3.4 59 207-265 266-325 (561)
321 COG1252 Ndh NADH dehydrogenase 95.0 0.1 2.2E-06 55.9 9.1 104 111-261 4-111 (405)
322 TIGR01292 TRX_reduct thioredox 95.0 0.24 5.2E-06 50.1 11.5 90 111-261 142-238 (300)
323 KOG2960 Protein involved in th 94.8 0.039 8.5E-07 53.3 4.7 36 110-145 76-114 (328)
324 KOG0404 Thioredoxin reductase 94.8 0.17 3.7E-06 49.5 9.1 114 111-260 9-123 (322)
325 TIGR03140 AhpF alkyl hydropero 94.8 0.24 5.3E-06 55.0 11.9 89 112-261 354-450 (515)
326 PRK12809 putative oxidoreducta 94.8 0.052 1.1E-06 62.0 6.5 36 110-145 310-346 (639)
327 PLN02487 zeta-carotene desatur 94.8 0.037 8E-07 62.1 5.2 54 207-260 297-359 (569)
328 TIGR03378 glycerol3P_GlpB glyc 94.7 0.15 3.3E-06 54.9 9.4 25 386-411 381-405 (419)
329 PRK12771 putative glutamate sy 94.7 0.065 1.4E-06 60.2 6.9 36 110-145 137-173 (564)
330 PRK12814 putative NADPH-depend 94.6 0.045 9.8E-07 62.6 5.4 35 110-144 193-228 (652)
331 KOG3851 Sulfide:quinone oxidor 94.5 0.11 2.5E-06 53.2 7.2 50 107-156 36-88 (446)
332 KOG1336 Monodehydroascorbate/f 94.4 0.32 7E-06 52.4 10.9 96 113-262 216-314 (478)
333 KOG2404 Fumarate reductase, fl 94.2 0.49 1.1E-05 48.7 11.1 56 207-262 145-207 (477)
334 PRK13984 putative oxidoreducta 94.0 0.12 2.6E-06 58.6 7.4 36 110-145 283-319 (604)
335 COG1232 HemY Protoporphyrinoge 94.0 0.058 1.3E-06 58.5 4.5 58 207-268 217-274 (444)
336 PRK12770 putative glutamate sy 94.0 0.079 1.7E-06 55.7 5.4 36 110-145 18-54 (352)
337 PLN02976 amine oxidase 94.0 0.066 1.4E-06 65.0 5.2 38 107-144 690-728 (1713)
338 TIGR03169 Nterm_to_SelD pyridi 93.9 0.63 1.4E-05 49.0 12.0 49 209-261 195-243 (364)
339 TIGR01317 GOGAT_sm_gam glutama 93.7 0.086 1.9E-06 58.2 5.2 35 110-144 143-178 (485)
340 PRK06567 putative bifunctional 93.7 0.077 1.7E-06 62.4 4.9 32 110-141 383-415 (1028)
341 PLN03000 amine oxidase 93.6 0.083 1.8E-06 61.6 4.9 36 221-257 392-427 (881)
342 TIGR00562 proto_IX_ox protopor 93.4 14 0.0003 40.1 22.0 35 110-144 2-41 (462)
343 COG0493 GltD NADPH-dependent g 93.3 0.13 2.7E-06 56.3 5.5 55 111-165 124-188 (457)
344 TIGR01316 gltA glutamate synth 93.0 1 2.2E-05 49.2 12.1 31 112-142 274-305 (449)
345 PRK11749 dihydropyrimidine deh 92.5 1.1 2.4E-05 48.9 11.7 31 112-142 275-307 (457)
346 PRK12770 putative glutamate sy 92.5 0.94 2E-05 47.6 10.7 31 112-142 174-206 (352)
347 PRK15317 alkyl hydroperoxide r 92.4 0.92 2E-05 50.4 11.0 89 112-261 353-449 (517)
348 PF13434 K_oxygenase: L-lysine 92.4 1.3 2.9E-05 46.5 11.6 129 110-259 190-339 (341)
349 COG1251 NirB NAD(P)H-nitrite r 92.2 0.29 6.4E-06 55.4 6.6 104 113-270 148-254 (793)
350 PTZ00188 adrenodoxin reductase 92.0 0.22 4.8E-06 54.7 5.3 36 110-145 39-76 (506)
351 TIGR02730 carot_isom carotene 91.6 0.69 1.5E-05 51.0 8.8 35 111-145 1-36 (493)
352 TIGR01372 soxA sarcosine oxida 91.6 0.96 2.1E-05 54.4 10.6 96 112-270 319-422 (985)
353 KOG1276 Protoporphyrinogen oxi 91.6 0.2 4.2E-06 53.4 4.1 34 110-143 11-47 (491)
354 PRK12810 gltD glutamate syntha 91.5 1.4 3.1E-05 48.3 11.1 48 213-260 337-399 (471)
355 KOG4405 GDP dissociation inhib 91.4 0.23 5.1E-06 52.5 4.5 37 109-145 7-44 (547)
356 COG5044 MRS6 RAB proteins gera 91.3 0.25 5.4E-06 51.7 4.5 36 110-145 6-42 (434)
357 PRK12831 putative oxidoreducta 91.1 1.9 4.2E-05 47.2 11.6 31 112-142 283-314 (464)
358 PF02558 ApbA: Ketopantoate re 90.9 0.32 7E-06 44.3 4.5 30 113-142 1-31 (151)
359 TIGR02734 crtI_fam phytoene de 90.7 1.1 2.5E-05 49.3 9.4 33 113-145 1-34 (502)
360 PF01210 NAD_Gly3P_dh_N: NAD-d 90.6 0.3 6.4E-06 45.3 4.0 30 113-142 2-32 (157)
361 KOG1439 RAB proteins geranylge 90.2 0.14 3E-06 54.1 1.5 45 218-263 245-290 (440)
362 PF02737 3HCDH_N: 3-hydroxyacy 90.2 0.35 7.6E-06 46.0 4.2 30 113-142 2-32 (180)
363 COG1087 GalE UDP-glucose 4-epi 89.4 0.81 1.8E-05 46.9 6.2 30 113-142 3-34 (329)
364 KOG1335 Dihydrolipoamide dehyd 89.1 2.1 4.6E-05 45.3 9.1 52 216-268 263-320 (506)
365 TIGR02354 thiF_fam2 thiamine b 89.1 0.51 1.1E-05 45.8 4.5 32 111-142 22-55 (200)
366 PRK13230 nitrogenase reductase 88.3 0.41 8.9E-06 48.6 3.4 31 113-143 4-40 (279)
367 KOG1346 Programmed cell death 88.2 0.52 1.1E-05 50.1 4.0 65 202-266 390-456 (659)
368 COG1179 Dinucleotide-utilizing 88.1 0.86 1.9E-05 45.2 5.2 50 111-164 31-82 (263)
369 TIGR01350 lipoamide_DH dihydro 87.9 0.84 1.8E-05 49.7 5.7 34 111-144 171-205 (461)
370 PRK02705 murD UDP-N-acetylmura 87.8 0.62 1.4E-05 50.8 4.6 33 113-145 3-36 (459)
371 PF03721 UDPG_MGDP_dh_N: UDP-g 87.7 0.49 1.1E-05 45.3 3.3 30 113-142 3-33 (185)
372 TIGR02732 zeta_caro_desat caro 87.7 39 0.00086 37.1 18.7 34 112-145 1-35 (474)
373 PRK12778 putative bifunctional 87.5 4 8.6E-05 47.7 11.3 31 112-142 572-604 (752)
374 PRK05708 2-dehydropantoate 2-r 87.4 0.65 1.4E-05 48.0 4.3 32 111-142 3-35 (305)
375 COG0569 TrkA K+ transport syst 87.4 0.63 1.4E-05 46.0 4.0 56 112-167 2-66 (225)
376 PRK06129 3-hydroxyacyl-CoA deh 87.0 0.65 1.4E-05 48.0 4.0 31 112-142 4-35 (308)
377 PRK13232 nifH nitrogenase redu 87.0 0.53 1.1E-05 47.7 3.3 31 113-143 4-40 (273)
378 PRK07688 thiamine/molybdopteri 86.5 0.82 1.8E-05 48.1 4.4 32 111-142 25-58 (339)
379 PRK12475 thiamine/molybdopteri 86.5 0.83 1.8E-05 48.0 4.5 33 111-143 25-59 (338)
380 PF01593 Amino_oxidase: Flavin 86.4 1.4 3E-05 46.2 6.2 50 211-260 215-264 (450)
381 cd01483 E1_enzyme_family Super 86.3 1.1 2.4E-05 40.6 4.7 31 113-143 2-34 (143)
382 COG1233 Phytoene dehydrogenase 86.3 1.8 4E-05 47.7 7.3 36 110-145 3-39 (487)
383 TIGR02356 adenyl_thiF thiazole 86.1 0.97 2.1E-05 43.8 4.4 33 111-143 22-56 (202)
384 PRK08293 3-hydroxybutyryl-CoA 85.8 0.84 1.8E-05 46.6 4.0 31 112-142 5-36 (287)
385 TIGR03467 HpnE squalene-associ 85.8 1.9 4.2E-05 45.7 6.9 55 206-260 198-253 (419)
386 PLN02676 polyamine oxidase 85.7 2 4.2E-05 47.5 7.1 35 110-144 26-62 (487)
387 cd01487 E1_ThiF_like E1_ThiF_l 85.7 1.1 2.4E-05 42.4 4.4 30 113-142 2-33 (174)
388 PRK06249 2-dehydropantoate 2-r 85.3 1.2 2.6E-05 46.1 4.9 32 111-142 6-38 (313)
389 TIGR01287 nifH nitrogenase iro 85.3 0.75 1.6E-05 46.5 3.3 31 113-143 3-39 (275)
390 PF00899 ThiF: ThiF family; I 85.2 1.1 2.3E-05 40.3 4.0 33 111-143 3-37 (135)
391 PRK13235 nifH nitrogenase redu 84.9 0.84 1.8E-05 46.2 3.5 31 113-143 4-40 (274)
392 PRK07819 3-hydroxybutyryl-CoA 84.8 1 2.2E-05 46.2 4.0 32 112-143 7-39 (286)
393 PRK09260 3-hydroxybutyryl-CoA 84.7 1 2.2E-05 46.1 4.0 30 113-142 4-34 (288)
394 PRK15116 sulfur acceptor prote 84.6 1.1 2.4E-05 45.4 4.2 33 111-143 31-65 (268)
395 PRK12814 putative NADPH-depend 84.4 9.5 0.0002 43.8 12.1 31 112-142 325-357 (652)
396 PTZ00363 rab-GDP dissociation 84.2 3.6 7.8E-05 44.9 8.1 37 109-145 3-40 (443)
397 cd02032 Bchl_like This family 84.1 0.88 1.9E-05 45.8 3.2 30 113-142 3-38 (267)
398 PRK06522 2-dehydropantoate 2-r 84.1 1.2 2.6E-05 45.4 4.3 29 113-141 3-32 (304)
399 PF01488 Shikimate_DH: Shikima 83.9 1.7 3.6E-05 39.3 4.6 32 111-142 13-46 (135)
400 PRK07066 3-hydroxybutyryl-CoA 83.8 1.2 2.7E-05 46.4 4.2 31 112-142 9-40 (321)
401 PRK01438 murD UDP-N-acetylmura 83.6 1.3 2.8E-05 48.7 4.5 31 112-142 18-49 (480)
402 TIGR01281 DPOR_bchL light-inde 83.6 0.97 2.1E-05 45.5 3.3 30 113-142 3-38 (268)
403 PRK12921 2-dehydropantoate 2-r 83.6 1.3 2.8E-05 45.3 4.3 28 113-140 3-31 (305)
404 PRK05329 anaerobic glycerol-3- 83.3 5.7 0.00012 43.1 9.2 33 110-142 2-35 (422)
405 cd02040 NifH NifH gene encodes 83.2 0.99 2.1E-05 45.2 3.2 31 113-143 4-40 (270)
406 PRK08644 thiamine biosynthesis 82.7 1.7 3.7E-05 42.5 4.5 32 111-142 29-62 (212)
407 cd02117 NifH_like This family 82.6 1.3 2.9E-05 42.9 3.7 31 113-143 3-39 (212)
408 PRK07530 3-hydroxybutyryl-CoA 82.4 1.5 3.2E-05 44.9 4.1 31 112-142 6-37 (292)
409 PRK13236 nitrogenase reductase 82.1 1.2 2.5E-05 45.9 3.2 32 113-144 9-46 (296)
410 PRK13234 nifH nitrogenase redu 82.1 1.2 2.7E-05 45.7 3.4 30 114-143 8-43 (295)
411 PRK06035 3-hydroxyacyl-CoA deh 82.0 1.5 3.3E-05 44.8 4.1 31 112-142 5-36 (291)
412 CHL00072 chlL photochlorophyll 81.6 1.3 2.8E-05 45.5 3.3 31 113-143 3-39 (290)
413 PRK13185 chlL protochlorophyll 81.6 1.2 2.7E-05 44.7 3.2 30 113-142 5-40 (270)
414 PF02254 TrkA_N: TrkA-N domain 81.0 2.2 4.7E-05 36.8 4.1 30 113-142 1-31 (116)
415 TIGR02355 moeB molybdopterin s 81.0 2.1 4.6E-05 42.7 4.5 33 111-143 25-59 (240)
416 PRK06718 precorrin-2 dehydroge 80.9 2.1 4.6E-05 41.5 4.4 31 111-141 11-42 (202)
417 PLN02487 zeta-carotene desatur 80.8 1.1E+02 0.0023 34.8 20.8 58 110-167 75-150 (569)
418 cd00755 YgdL_like Family of ac 80.5 2.1 4.4E-05 42.6 4.2 33 111-143 12-46 (231)
419 PRK12769 putative oxidoreducta 80.5 16 0.00035 41.9 12.1 31 112-142 470-502 (654)
420 PF01593 Amino_oxidase: Flavin 80.2 1.6 3.6E-05 45.7 3.7 26 120-145 2-27 (450)
421 PRK08229 2-dehydropantoate 2-r 80.1 2 4.4E-05 44.8 4.3 30 112-141 4-34 (341)
422 KOG1800 Ferredoxin/adrenodoxin 80.0 2.2 4.7E-05 45.1 4.3 35 111-145 21-58 (468)
423 TIGR03736 PRTRC_ThiF PRTRC sys 79.6 2.3 5E-05 42.6 4.3 33 110-142 11-55 (244)
424 PRK06719 precorrin-2 dehydroge 79.5 2.6 5.6E-05 39.2 4.3 29 111-139 14-43 (157)
425 cd00757 ThiF_MoeB_HesA_family 79.5 2.5 5.5E-05 41.7 4.5 32 111-142 22-55 (228)
426 PLN02268 probable polyamine ox 79.4 4.6 0.0001 43.5 6.9 33 112-144 2-35 (435)
427 PRK04148 hypothetical protein; 79.4 1.7 3.7E-05 39.4 2.9 31 112-142 19-49 (134)
428 PRK05808 3-hydroxybutyryl-CoA 79.3 2.2 4.7E-05 43.4 4.0 31 112-142 5-36 (282)
429 PRK12549 shikimate 5-dehydroge 79.2 2.5 5.4E-05 43.3 4.5 32 111-142 128-161 (284)
430 PRK05690 molybdopterin biosynt 79.0 2.6 5.6E-05 42.2 4.5 33 110-142 32-66 (245)
431 TIGR02731 phytoene_desat phyto 78.7 5.9 0.00013 43.0 7.5 55 112-166 1-73 (453)
432 PRK06153 hypothetical protein; 78.7 2.1 4.7E-05 45.5 3.8 33 111-143 177-211 (393)
433 TIGR02733 desat_CrtD C-3',4' d 78.6 7.2 0.00016 42.9 8.3 35 111-145 2-37 (492)
434 KOG0399 Glutamate synthase [Am 78.6 2.2 4.7E-05 50.7 4.1 35 111-145 1786-1821(2142)
435 COG2907 Predicted NAD/FAD-bind 78.5 2.1 4.5E-05 44.8 3.6 42 219-260 231-272 (447)
436 KOG2018 Predicted dinucleotide 78.4 2.8 6.1E-05 43.0 4.4 50 113-166 77-128 (430)
437 PRK14620 NAD(P)H-dependent gly 78.3 2.4 5.3E-05 44.0 4.2 31 112-142 2-33 (326)
438 TIGR01318 gltD_gamma_fam gluta 78.3 22 0.00047 39.1 11.8 32 111-142 283-316 (467)
439 PRK08328 hypothetical protein; 78.2 3.1 6.6E-05 41.3 4.7 32 111-142 28-61 (231)
440 PRK14106 murD UDP-N-acetylmura 78.2 2.6 5.6E-05 45.8 4.5 32 111-142 6-38 (450)
441 PLN02568 polyamine oxidase 78.1 6.5 0.00014 44.0 7.7 36 110-145 5-46 (539)
442 TIGR01816 sdhA_forward succina 77.7 8.9 0.00019 43.2 8.7 59 205-263 119-183 (565)
443 PRK06130 3-hydroxybutyryl-CoA 77.6 2.7 5.8E-05 43.3 4.2 31 112-142 6-37 (311)
444 TIGR03325 BphB_TodD cis-2,3-di 77.4 2.8 6.1E-05 41.6 4.2 31 112-142 7-39 (262)
445 PLN02918 pyridoxine (pyridoxam 77.4 2.2 4.8E-05 47.5 3.6 117 10-139 28-169 (544)
446 COG1250 FadB 3-hydroxyacyl-CoA 77.2 4 8.6E-05 42.3 5.2 60 112-172 5-65 (307)
447 PRK08177 short chain dehydroge 77.1 3.2 6.9E-05 40.2 4.4 30 113-142 4-35 (225)
448 PRK12548 shikimate 5-dehydroge 76.8 3.3 7.1E-05 42.5 4.5 31 112-142 128-160 (289)
449 PF06100 Strep_67kDa_ant: Stre 76.6 27 0.0006 38.4 11.6 29 207-235 209-237 (500)
450 PRK00094 gpsA NAD(P)H-dependen 76.5 2.9 6.2E-05 43.1 4.1 31 112-142 3-34 (325)
451 PRK07417 arogenate dehydrogena 76.5 2.8 6.1E-05 42.6 3.9 31 112-142 2-33 (279)
452 PRK06483 dihydromonapterin red 76.2 3.6 7.7E-05 40.1 4.5 30 113-142 5-36 (236)
453 PLN02780 ketoreductase/ oxidor 76.2 2.9 6.3E-05 43.4 4.0 30 113-142 56-87 (320)
454 cd01075 NAD_bind_Leu_Phe_Val_D 76.1 3.7 8.1E-05 39.7 4.5 30 112-141 30-60 (200)
455 PRK07890 short chain dehydroge 76.1 3.1 6.7E-05 41.0 4.1 31 112-142 7-39 (258)
456 TIGR01763 MalateDH_bact malate 76.1 3.1 6.7E-05 43.1 4.1 30 112-141 3-34 (305)
457 PRK08303 short chain dehydroge 76.1 3.3 7.1E-05 42.7 4.3 32 112-143 10-43 (305)
458 PF06564 YhjQ: YhjQ protein; 76.0 2.4 5.3E-05 42.4 3.2 30 113-142 4-40 (243)
459 PRK07067 sorbitol dehydrogenas 76.0 3.3 7.1E-05 40.9 4.2 30 113-142 9-40 (257)
460 PRK08339 short chain dehydroge 75.8 3.4 7.4E-05 41.3 4.3 30 113-142 11-42 (263)
461 PRK06101 short chain dehydroge 75.8 3.5 7.6E-05 40.4 4.3 29 113-141 4-34 (240)
462 TIGR01470 cysG_Nterm siroheme 75.7 3.8 8.3E-05 39.8 4.5 30 112-141 11-41 (205)
463 PRK11199 tyrA bifunctional cho 75.6 4.1 8.8E-05 43.4 5.0 83 39-141 47-131 (374)
464 PRK11064 wecC UDP-N-acetyl-D-m 75.5 3 6.5E-05 45.1 4.0 31 112-142 5-36 (415)
465 cd01485 E1-1_like Ubiquitin ac 75.5 3.6 7.8E-05 39.7 4.2 32 111-142 20-53 (198)
466 PRK08762 molybdopterin biosynt 75.5 3.4 7.4E-05 44.0 4.4 32 111-142 136-169 (376)
467 PF13738 Pyr_redox_3: Pyridine 75.4 3.1 6.8E-05 39.4 3.8 32 111-142 168-200 (203)
468 PRK14618 NAD(P)H-dependent gly 75.4 3.2 6.9E-05 43.2 4.1 31 112-142 6-37 (328)
469 PRK08340 glucose-1-dehydrogena 75.3 3.4 7.4E-05 40.9 4.1 30 113-142 3-34 (259)
470 KOG0685 Flavin-containing amin 75.3 3.6 7.8E-05 44.7 4.4 34 222-255 246-280 (498)
471 PRK06171 sorbitol-6-phosphate 75.1 3.8 8.2E-05 40.7 4.4 31 113-143 12-44 (266)
472 PLN02545 3-hydroxybutyryl-CoA 75.0 3.3 7.3E-05 42.3 4.1 32 112-143 6-38 (295)
473 PRK07063 short chain dehydroge 75.0 3.6 7.9E-05 40.7 4.2 31 112-142 9-41 (260)
474 PRK08862 short chain dehydroge 74.8 3.8 8.3E-05 40.2 4.3 31 112-142 7-39 (227)
475 PRK06057 short chain dehydroge 74.8 3.7 8E-05 40.6 4.2 31 112-142 9-41 (255)
476 PRK05866 short chain dehydroge 74.5 3.8 8.3E-05 41.8 4.4 30 113-142 43-74 (293)
477 PRK05600 thiamine biosynthesis 74.5 3.8 8.2E-05 43.7 4.4 33 111-143 42-76 (370)
478 PRK05854 short chain dehydroge 74.4 3.9 8.4E-05 42.2 4.4 31 112-142 16-48 (313)
479 PRK06924 short chain dehydroge 74.2 4.1 8.9E-05 40.0 4.4 30 113-142 4-35 (251)
480 PRK10538 malonic semialdehyde 74.0 3.9 8.5E-05 40.2 4.2 30 113-142 3-34 (248)
481 PRK12481 2-deoxy-D-gluconate 3 74.0 4.1 8.9E-05 40.3 4.3 29 113-141 11-41 (251)
482 PRK07878 molybdopterin biosynt 73.9 3.8 8.1E-05 44.0 4.3 32 111-142 43-76 (392)
483 TIGR02279 PaaC-3OHAcCoADH 3-hy 73.9 3.4 7.5E-05 45.8 4.1 32 112-143 7-39 (503)
484 PRK07024 short chain dehydroge 73.8 4.2 9.2E-05 40.2 4.4 31 112-142 4-36 (257)
485 PRK08265 short chain dehydroge 73.7 4.1 8.8E-05 40.5 4.2 31 112-142 8-40 (261)
486 PRK02472 murD UDP-N-acetylmura 73.6 4 8.7E-05 44.2 4.5 31 113-143 8-39 (447)
487 PRK07023 short chain dehydroge 73.5 4.2 9.2E-05 39.7 4.2 30 113-142 4-35 (243)
488 COG1004 Ugd Predicted UDP-gluc 73.4 3.6 7.8E-05 43.8 3.8 31 112-142 2-33 (414)
489 PF00670 AdoHcyase_NAD: S-aden 73.4 4.3 9.4E-05 38.0 3.9 32 112-143 25-57 (162)
490 PRK13233 nifH nitrogenase redu 73.4 3 6.6E-05 42.1 3.2 31 113-143 5-42 (275)
491 PRK07326 short chain dehydroge 73.4 4.1 8.8E-05 39.5 4.1 31 112-142 8-40 (237)
492 cd05291 HicDH_like L-2-hydroxy 73.3 4.4 9.5E-05 41.9 4.5 31 113-143 3-36 (306)
493 PRK06720 hypothetical protein; 73.2 4.8 0.0001 37.8 4.4 31 112-142 18-50 (169)
494 PRK07102 short chain dehydroge 73.1 4.2 9.1E-05 39.8 4.1 30 113-142 4-35 (243)
495 PRK07231 fabG 3-ketoacyl-(acyl 73.0 4.2 9.1E-05 39.7 4.1 31 112-142 7-39 (251)
496 cd01492 Aos1_SUMO Ubiquitin ac 73.0 5.2 0.00011 38.6 4.6 32 111-142 22-55 (197)
497 PRK06200 2,3-dihydroxy-2,3-dih 73.0 4.2 9.2E-05 40.3 4.2 31 112-142 8-40 (263)
498 PRK03803 murD UDP-N-acetylmura 73.0 4.2 9.1E-05 44.2 4.4 31 112-142 8-39 (448)
499 PRK06398 aldose dehydrogenase; 72.9 4.7 0.0001 40.1 4.5 32 112-143 8-41 (258)
500 PRK12384 sorbitol-6-phosphate 72.9 4.4 9.6E-05 40.0 4.2 30 113-142 5-36 (259)
No 1
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=9.4e-33 Score=293.56 Aligned_cols=346 Identities=18% Similarity=0.209 Sum_probs=224.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC--CCCCCccccCCHHHHHHHHHcCCCCcccchhhhh---h--cc-C
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDDIDEATA---T--KF-N 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~--~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~--~~-~ 180 (549)
.+||+||||| +|+++|+.|+++|++|+||||.+ +....+...|++++++.|+++|+++. ++..-. . .. .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~--i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR--LEALGVPPLHVMVVDD 79 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhh--hhhccCCceeeEEEec
Confidence 5899999976 59999999999999999999982 22334677899999999999998532 221100 0 00 1
Q ss_pred C--CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEc-CCcEEEcCEEEEc
Q 008915 181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDA 256 (549)
Q Consensus 181 ~--~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~-dG~~i~ArlVI~A 256 (549)
. ..+.|.. ..... ..+++.+.+..|.+.|.+++.+.+ ++++.+++|+.++.++++++++++ +|++++||+||+|
T Consensus 80 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 80 GGRRLLIFDA-AELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred CCceeEEecc-cccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 1 1233332 11121 345688999999999999999887 699999999999999999999998 8999999999999
Q ss_pred cCCChHHHHHhcCCC----CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 257 MGNFSPVVKQIRSGR----KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 257 DG~~S~vrrql~~~~----~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
||.+|.+|+++++.. .+.+.+++........+.....+.+...+++ ..+|..+. ....++.
T Consensus 158 DG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~p~~~~---~~~~~~~ 222 (387)
T COG0654 158 DGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPF------------ALLPLPDN---RSSVVWS 222 (387)
T ss_pred CCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCce------------EEEecCCC---ceeEEEE
Confidence 999999999998332 2333343322211101111122222222211 13454422 2222222
Q ss_pred ccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchh
Q 008915 333 YIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG 409 (549)
Q Consensus 333 ~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g 409 (549)
...... ...+.++..+.+.+.+|.... +....... ....+|.....+.++..+|++|+|||||.+||++|||+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~n 299 (387)
T COG0654 223 LPPGPAEDLQGLSDEEFLRELQRRLGERDP--LGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGAN 299 (387)
T ss_pred CChhhHHHHhcCCHHHHHHHHHHhcCcccc--cceEEEcc-ccccccccchhhhheecCcEEEEeeccccCCCccccchh
Confidence 211100 011333333444444444311 11111111 123567765566788889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcC
Q 008915 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVG 489 (549)
Q Consensus 410 ~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g 489 (549)
++++|+..|++.|.++...+. + ...|++|++.+....... ..+++ .+...+.+.......+++.+
T Consensus 300 lgl~Da~~La~~L~~~~~~~~-~---~~~L~~Y~~~R~~~~~~~-------~~~s~----~~~~~~~~~~~~~~~~r~~~ 364 (387)
T COG0654 300 LALEDAAALAEALAAAPRPGA-D---AAALAAYEARRRPRAEAI-------QKLSR----ALGRLFSADGPFARFLRNLG 364 (387)
T ss_pred hhhhhHHHHHHHHHHHhhcCc-c---HHHHHHHHHhhhhHHHHH-------HHHHH----HHhhhhccCCcHHHHHHHHH
Confidence 999999999999999987532 2 456789996554322111 12222 22457888888888988888
Q ss_pred hhh
Q 008915 490 IPV 492 (549)
Q Consensus 490 ~~~ 492 (549)
+..
T Consensus 365 l~~ 367 (387)
T COG0654 365 LRL 367 (387)
T ss_pred HHh
Confidence 774
No 2
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=8.6e-33 Score=293.59 Aligned_cols=354 Identities=17% Similarity=0.120 Sum_probs=222.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-------CccccCCHHHHHHHHHcCCCCcccch------hhh
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDID------EAT 175 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~~~IS~~~l~~L~~lGl~~~~eie------~~i 175 (549)
+|||+||||| +|+++|+.|+++|++|+|||+.+.+.. .+...+++.+++.|+.+|+|+..+-. .+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 6999999976 599999999999999999999864321 13346899999999999999643210 000
Q ss_pred hhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 176 ~~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
...+....+.|.. ..+.. ...++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++++|++++|++||
T Consensus 85 ~~~~~~~~~~~~~-~~~~~-~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDA-AELKL-PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 0011222233321 11111 22457799999999999998876 889999999999998888888988888899999999
Q ss_pred EccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
+|||.+|++|++++.+.. +.+.|.++.......+.....+.+...++ .. .+|..++ ....++
T Consensus 163 ~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~-~~p~~~~---~~~~v~ 227 (391)
T PRK08020 163 GADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGP-----------RA-FLPLFDN---WASLVW 227 (391)
T ss_pred EeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCC-----------EE-EeECCCC---cEEEEE
Confidence 999999999999876532 23334332221111111111112211111 11 2454432 222222
Q ss_pred EccCCCCC----cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 332 TYIDPQAG----SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 332 ~~~~~~~~----~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+...... ..+.+++.+.+.+.+|.. +..+... ..+.+|.......++..+|++|+|||||.+||+.|||
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG 300 (391)
T PRK08020 228 -YDSPARIRQLQAMSMAQLQQEIAAHFPAR----LGAVTPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQG 300 (391)
T ss_pred -ECCHHHHHHHHCCCHHHHHHHHHHHhhhh----ccceEec--cccEeecceeehhhhccCcEEEEechhhccCCcccch
Confidence 1110000 012233333333333321 1122111 2245677655566788899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|++++|+..|++.+.++.+.+. +......|+.|++.+..... .++.+++.. ..+|+++......+|+
T Consensus 301 ~n~al~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~~-------~~~~~~~~l----~~~~~~~~~~~~~~R~ 368 (391)
T PRK08020 301 VNLGYRDVDALLDVLVNARSYGE-AWASEAVLKRYQRRRMADNL-------LMQSGMDLF----YAGFSNNLPPLRFARN 368 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHcCCchHHHHHHH
Confidence 99999999999999998876543 33344567899965432110 112233333 4578888888889999
Q ss_pred cChhh--hHhhHHH
Q 008915 488 VGIPV--LVDWSGH 499 (549)
Q Consensus 488 ~g~~~--~~~~~~~ 499 (549)
.|+.. .+.+++.
T Consensus 369 ~~l~~~~~~~~~k~ 382 (391)
T PRK08020 369 LGLMAAQRAGVLKR 382 (391)
T ss_pred HHHHHHhcCHHHHH
Confidence 88875 4445444
No 3
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=5.4e-33 Score=294.01 Aligned_cols=338 Identities=15% Similarity=0.153 Sum_probs=215.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-----CCccccCCHHHHHHHHHcCCCCcccchhhhhhccCC---
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKFNP--- 181 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-----~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~--- 181 (549)
+||+||||| +|+++|+.|+++|++|+|+|+.+... ..+.+.|+++++..|+++|+|+.. +.. ...+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~-~~~~~~~~~ 78 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEEL--EKF-VAEMQDIYV 78 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHH--Hhh-cCCCcEEEE
Confidence 799999976 59999999999999999999975422 246778999999999999998642 211 111100
Q ss_pred ------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 182 ------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 182 ------~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
..+.+.. .....+++.+++..|++.|.+++.+.+ ++++.+++++++..++++++|+++++ +++||+||
T Consensus 79 ~~~~g~~~~~~~~----~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvI 153 (374)
T PRK06617 79 VDNKASEILDLRN----DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLI 153 (374)
T ss_pred EECCCceEEEecC----CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEE
Confidence 0111211 011234688999999999999998876 68999999999999999999998766 89999999
Q ss_pred EccCCChHHHHHhcCCC--CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 255 DAMGNFSPVVKQIRSGR--KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~--~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
+|||.+|.+|++++.+. ...+.+.+........+.+...+.+... +.+| .+|..++. ....++.
T Consensus 154 gADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~~~~~~~~~~~-----------g~~~-~lPl~~~~--~~~~vw~ 219 (374)
T PRK06617 154 ICDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHENCAMEHFLPL-----------GPFA-LLPLKDQY--ASSVIWS 219 (374)
T ss_pred EeCCCCchhHHhcCCCcccccCCeEEEEEEeccCCCCCEEEEEecCC-----------CCEE-EeECCCCC--eEEEEEe
Confidence 99999999999987653 1124443332211111111122333222 2244 56776541 1233333
Q ss_pred ccCCCCC-----c-ccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 333 YIDPQAG-----S-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 333 ~~~~~~~-----~-~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
....... . ..+.++++.++ +. . ++.+.... ....+|.+.....+++.+|++|+|||||.+||++||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~-~~~i~~~~-~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQ 291 (374)
T PRK06617 220 TSSDQAALIVNLPVEEVRFLTQRNA---GN---S-LGKITIDS-EISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQ 291 (374)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHhh---ch---h-cCceeecc-ceeEEEeeeeeccceecCCEEEEEcccccCCCCccc
Confidence 2110000 0 01122222211 11 0 12222111 124567776556678899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|++++|+..|++.|. .. ..|+.|++.+..... .++.+++.. ..+|.+...+...+|
T Consensus 292 G~n~gl~Da~~La~~L~----~~-------~~L~~Ye~~R~~~~~-------~~~~~t~~l----~~~f~~~~~~~~~~R 349 (374)
T PRK06617 292 GLNQGIKDIEILSMIVS----NN-------GTLQEYQKLRQEDNF-------IMYKLTDEL----NNIFSNYSKNLRCLR 349 (374)
T ss_pred cHHHHHHHHHHHHHHHc----Cc-------chHHHHHHHHhHHHH-------HHHHHHHHH----HHHHcCCchHHHHHH
Confidence 99999999998887662 11 346899965543221 222344433 457888888888889
Q ss_pred hcChhh--hHhhHHHH
Q 008915 487 QVGIPV--LVDWSGHF 500 (549)
Q Consensus 487 ~~g~~~--~~~~~~~~ 500 (549)
+.|+.. .+.|+|..
T Consensus 350 ~~~l~~~~~~~~~k~~ 365 (374)
T PRK06617 350 QIGFKVINNFKPIKNL 365 (374)
T ss_pred HHHHHHHhcCHHHHHH
Confidence 888874 44555543
No 4
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=8.9e-33 Score=294.92 Aligned_cols=350 Identities=16% Similarity=0.130 Sum_probs=216.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-------CccccCCHHHHHHHHHcCCCCcccchh-hhhhcc-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDE-ATATKF- 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~~~IS~~~l~~L~~lGl~~~~eie~-~i~~~~- 179 (549)
+|||+||||| +|+++|+.|+++|++|+||||.+.+.. .+...|++.+++.|+++|+|+...-.. ......
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 5899999965 699999999999999999999886432 244567899999999999986421110 000100
Q ss_pred --CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 180 --NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 180 --~~---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
.. ..+.|... ....+ ..++.+++..|++.|.+++.+. |++++.+++|++++.+++++.|++.+|++++||+|
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQ-SMGYS-HLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEccc-ccCCC-ccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 11 12222210 01111 1346799999999999999886 78999999999999989999999988999999999
Q ss_pred EEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
|+|||.+|.||++++++.. +.+.+.+........+.......+. +.++++ .+|..++. ...+.
T Consensus 161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~~--~~~~~ 226 (400)
T PRK08013 161 VGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFH-----------GDGILA-FLPLSDPH--LCSIV 226 (400)
T ss_pred EEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEc-----------CCCCEE-EEECCCCC--eEEEE
Confidence 9999999999999987643 2233332211111100111111111 123444 56765431 22333
Q ss_pred EEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 331 ~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+........ ....+++.+.+...++. .+...++.... ..+|.......+++.+|++|+|||||.+||++|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG 301 (400)
T PRK08013 227 WSLSPEEAQRMQQAPEEEFNRALAIAFDN----RLGLCELESER-QVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQG 301 (400)
T ss_pred EEcCHHHHHHHHcCCHHHHHHHHHHHHhH----hhCceEecCCc-cEEecceeecccccCCcEEEEechhhcCCccccCc
Confidence 333211000 01112222222222211 01222222111 23455544556788999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|++++|+..|++.|..++..+. +......|+.|++.+... .+ .++.+++.. ..++.++......+|+
T Consensus 302 ~n~gi~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~----~~---~~~~~~~~~----~~l~~~~~~~~~~~R~ 369 (400)
T PRK08013 302 VNLGFMDAAELIAELRRLHRQGK-DIGQHLYLRRYERSRKHS----AA---LMLAGMQGF----RDLFAGNNPAKKLLRD 369 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHH----HH---HHHHHHHHH----HHHHcCCchHHHHHHH
Confidence 99999999999999988876553 222334578999644322 12 112222222 4567777777778887
Q ss_pred cChhh
Q 008915 488 VGIPV 492 (549)
Q Consensus 488 ~g~~~ 492 (549)
+++..
T Consensus 370 ~~l~~ 374 (400)
T PRK08013 370 IGLKL 374 (400)
T ss_pred HHHHH
Confidence 77664
No 5
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=3.3e-32 Score=289.47 Aligned_cols=341 Identities=17% Similarity=0.142 Sum_probs=218.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC------CccccCCHHHHHHHHHcCCCCcccchhhhhhccC--
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFN-- 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~-- 180 (549)
.+||+||||| +|+++|+.|+++|++|+||||.+.++. .+...+++.+++.|+++|+|+.. +......+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~ 83 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAV--RAARAQPYRRM 83 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhh--hHhhCCcccEE
Confidence 6999999975 599999999999999999999876532 24457899999999999999652 211011111
Q ss_pred -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 181 -------~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
...+.|... .+ .+..+++.+++..|.+.|.+++.+.|++++.+++|+++..++++++|++++|++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 84 RVWDAGGGGELGFDAD-TL-GREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEEeCCCCceEEechh-cc-CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 011222110 11 112345779999999999999998999999999999999988899998888889999999
Q ss_pred EEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCC-ceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~-~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
|+|||.+|.+++++++..+ +...+.+.. .....+.. ...+.+... +.+. .+|..++ ...+
T Consensus 162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-----------g~~~-~lP~~~~---~~~~ 225 (392)
T PRK08773 162 IAADGAASTLRELAGLPVSRHDYAQRGVVAF-VDTEHPHQATAWQRFLPT-----------GPLA-LLPFADG---RSSI 225 (392)
T ss_pred EEecCCCchHHHhhcCCceEEEeccEEEEEE-EEccCCCCCEEEEEeCCC-----------CcEE-EEECCCC---ceEE
Confidence 9999999999999876532 111222111 11011111 111111111 1122 4565544 2333
Q ss_pred EEEccCCCC------Ccc-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 008915 330 MFTYIDPQA------GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 330 l~~~~~~~~------~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (549)
++.+..... ... ..+++.+.|...++.+.. ... ...+|.+.....++..+|++|+|||||.+||
T Consensus 226 ~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P 296 (392)
T PRK08773 226 VWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRV--------ASP-RTAFPLRRQLVQQYVSGRVLTLGDAAHVVHP 296 (392)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEe--------cCC-ccEeechhhhhhhhcCCcEEEEechhhcCCC
Confidence 333321000 011 122333333333332221 111 1245666555567889999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHH
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIP 482 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~ 482 (549)
++|||+|++++|+..|++.|.++++.+. +..+...|++||+.+..... -++.+++ .+..+|++.....
T Consensus 297 ~~GqG~n~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~R~~~~~-------~~~~~~~----~l~~~f~~~~~~~ 364 (392)
T PRK08773 297 LAGQGVNLGLRDVAALQQLVRQAHARRA-DWAAPHRLQRWARTRRSDNT-------VAAYGFD----AINRVFSNDEMHL 364 (392)
T ss_pred chhchhhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHH-------HHHHHHH----HHHHHHcCCChHH
Confidence 9999999999999999999999887653 34456678999964432210 0111222 2356788888888
Q ss_pred HHHhhcChh
Q 008915 483 SIFKQVGIP 491 (549)
Q Consensus 483 ~~~~~~g~~ 491 (549)
..+|+.|+.
T Consensus 365 ~~~r~~~l~ 373 (392)
T PRK08773 365 TLLRGSVLG 373 (392)
T ss_pred HHHHHHHHH
Confidence 888887776
No 6
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-31 Score=285.83 Aligned_cols=345 Identities=15% Similarity=0.077 Sum_probs=219.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccC------
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATATKFN------ 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~------ 180 (549)
.+|||+||||| +|+++|+.|+++|++|+||||.+.. ...+..++++.+++.|.++|+|+. +.+.......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~--~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLER--FLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhH--HhhcccceeeeEEEEE
Confidence 36999999976 5999999999999999999998643 334566899999999999999864 2211100010
Q ss_pred CC----cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EE--EcCCc-EEEcC
Q 008915 181 PN----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LL--LAEGK-ILSSH 251 (549)
Q Consensus 181 ~~----~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~--~~dG~-~i~Ar 251 (549)
.+ .+.|.. ...+..+++.+++..+.+.|.+++.+. |++++.+++++++..+++++. |. ..+|+ +++|+
T Consensus 83 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~ 159 (407)
T PRK06185 83 GGRTVTLADFSR---LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRAD 159 (407)
T ss_pred CCeEEEecchhh---cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeC
Confidence 01 011111 111122345688889999999988765 789999999999988877653 33 34564 79999
Q ss_pred EEEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCC--ceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 252 LIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN--STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 252 lVI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~--~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
+||+|||.+|.+|+++++..+ +.+.+..+. ....+.+ ...+.+ . ..++++ .+|.. + .
T Consensus 160 ~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~-----~~g~~~-llP~~-~---~ 221 (407)
T PRK06185 160 LVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPREPDDPESLMGRF------G-----PGQGLI-MIDRG-D---Y 221 (407)
T ss_pred EEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCCCCCCCcccceEe------c-----CCcEEE-EEcCC-C---e
Confidence 999999999999999887542 222221111 1100010 011111 1 124454 56765 3 2
Q ss_pred eEEEEEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 008915 327 TTYMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (549)
Q Consensus 327 ~~~l~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl 403 (549)
....+........ ..+.+++.+.+.+..|.+... ++.++.... ...+|.......++..+|++|+|||||.+||+
T Consensus 222 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~ 299 (407)
T PRK06185 222 WQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADR-VAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPV 299 (407)
T ss_pred EEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHH-HhhcCCccc-cEEEEEeccccccccCCCeEEEeccccccCcc
Confidence 2233332221111 113445555555555654332 222211111 12456655556678889999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCC--cH
Q 008915 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQ--II 481 (549)
Q Consensus 404 tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~--ll 481 (549)
+|||+|++++|+..|++.|.++++.++... ..|+.|++.+..... .++.+++.. ..++.++. .+
T Consensus 300 ~GqG~nlgl~Da~~La~~l~~~~~~~~~~~---~~L~~Y~~~R~~~~~-------~~~~~~~~~----~~~~~~~~~~~~ 365 (407)
T PRK06185 300 GGVGINLAIQDAVAAANILAEPLRRGRVSD---RDLAAVQRRREFPTR-------VTQALQRRI----QRRLLAPALAGR 365 (407)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccCCccH---HHHHHHHHHhhhHHH-------HHHHHHHHH----HHhhccccccCc
Confidence 999999999999999999999987764322 567999965543221 233444443 45778877 77
Q ss_pred HHHHhhcChhh
Q 008915 482 PSIFKQVGIPV 492 (549)
Q Consensus 482 ~~~~~~~g~~~ 492 (549)
..++|++|+..
T Consensus 366 ~~~~R~~~l~~ 376 (407)
T PRK06185 366 GPLGPPLLLRL 376 (407)
T ss_pred cccCCchHHHH
Confidence 88889888874
No 7
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.2e-31 Score=284.49 Aligned_cols=345 Identities=19% Similarity=0.189 Sum_probs=218.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C-CCc-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT--KF-N-PNR- 183 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~--~~-~-~~~- 183 (549)
.||||||||| +|+++|+.|+++|++|+||||.+.+...+.+.++..+++.|+++|+|+...-...... .+ . .+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 6999999976 5999999999999999999999876666778899999999999999864211000000 00 0 010
Q ss_pred -----ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 184 -----CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 184 -----i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
..|.. ..+ ....+++.+++..+.+.|.+++.+.++..+.+++|+++..+++++.|++++|++++||+||+|||
T Consensus 87 ~~~~~~~~~~-~~~-~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 87 IRAPEVRFRA-AEI-GEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCCceEEEcH-Hhc-CCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence 01110 000 11234678999999999999998876544889999999999999999988888999999999999
Q ss_pred CChHHHHHhcCCC---CCCceeeEEeEeeeccCCCc-eeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 259 NFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 259 ~~S~vrrql~~~~---~~~~~~~~vg~~~~g~~~~~-~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
.+|.+++++++.. .+.+.+.++... ...+... ..+++.. .+.++ .+|..++ ...+++...
T Consensus 165 ~~S~vr~~~g~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~-----------~g~~~-~~Pl~~~---~~~~v~~~~ 228 (388)
T PRK07494 165 RNSPVREAAGIGVRTWSYPQKALVLNFT-HSRPHQNVSTEFHTE-----------GGPFT-QVPLPGR---RSSLVWVVR 228 (388)
T ss_pred CCchhHHhcCCCceecCCCCEEEEEEEe-ccCCCCCEEEEEeCC-----------CCcEE-EEECCCC---cEEEEEECC
Confidence 9999999987653 233334332221 1121111 1222211 12233 4676644 333433322
Q ss_pred CCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 335 DPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 335 ~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
..... ..+.+++.+.+...++.+ ++..+.... ...+|.....+.++..+|++|+|||||.+||++|||+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~ 303 (388)
T PRK07494 229 PAEAERLLALSDAALSAAIEERMQSM----LGKLTLEPG-RQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLG 303 (388)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh----cCCeEEccC-CcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchh
Confidence 11000 112223333332223222 122211111 1346666555557788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChh
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP 491 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~ 491 (549)
++|+..|++.|..... + ......|+.|++.+......+ +.+++. +..++.++......+|++++.
T Consensus 304 l~Da~~La~~L~~~~~-~---~~~~~~L~~Y~~~R~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~R~~~l~ 368 (388)
T PRK07494 304 LRDVATLVEIVEDRPE-D---PGSAAVLAAYDRARRPDILSR-------TASVDL----LNRSLLSDFLPVQDLRAAGLH 368 (388)
T ss_pred HHHHHHHHHHHHhcCC-C---cchHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHcCCchHHHHHHHHHHH
Confidence 9999999998876321 1 223456799996544322122 222332 256788888888888888877
Q ss_pred h
Q 008915 492 V 492 (549)
Q Consensus 492 ~ 492 (549)
.
T Consensus 369 ~ 369 (388)
T PRK07494 369 L 369 (388)
T ss_pred H
Confidence 3
No 8
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=3.3e-31 Score=282.98 Aligned_cols=354 Identities=13% Similarity=0.095 Sum_probs=219.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC---------CCCccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~---------~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
.|||+||||| +|+++|+.|+++|++|+|+||.+.. ...+...+++++++.|+++|+|+. +.......+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~--l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDG--IAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhh--hhHhhCccc
Confidence 5899999976 5999999999999999999998731 123455789999999999999864 221100011
Q ss_pred ------CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEc
Q 008915 180 ------NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS 250 (549)
Q Consensus 180 ------~~---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~A 250 (549)
+. ..+.|.. ..... ..+++.+++..+.+.|.+++.+.|++++.++++++++.++++++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a 157 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSA-ASVHA-EVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA 157 (405)
T ss_pred eeEEEEcCCCCceEEecc-cccCC-CccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 00 1112211 01111 2245678899999999999988899999999999999998999999888889999
Q ss_pred CEEEEccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccc-
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR- 326 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~- 326 (549)
++||+|||.+|.+|++++...+. .+.+.+........+.......+. + .+.++ .+|..++....
T Consensus 158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~g~~~-~~P~~~~~~~~~ 225 (405)
T PRK05714 158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFT---D--------DGPLA-FLPLERDGDEHW 225 (405)
T ss_pred CEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcC---C--------CCCeE-EeeCCCCCCCCe
Confidence 99999999999999998765322 222221111000000111111111 0 12233 46764321111
Q ss_pred eEEEEEccCCCC------Ccc-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCC
Q 008915 327 TTYMFTYIDPQA------GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399 (549)
Q Consensus 327 ~~~l~~~~~~~~------~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~ 399 (549)
....+....... ... ..+++.+.|...++++... .. ...+|++.....++..+|++|+|||||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~~~~~rv~LlGDAAH~ 296 (405)
T PRK05714 226 CSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSA-------DP--RLCVPLRQRHAKRYVEPGLALIGDAAHT 296 (405)
T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceec-------CC--ccEEecceeehhhhccCCEEEEEecccc
Confidence 122222211000 000 1222223333332222111 11 1235665555567888999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCC
Q 008915 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQ 479 (549)
Q Consensus 400 v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ 479 (549)
+||++|||+|++++|+..|++.|..++..+. +.+....|+.|++.+..... .++.+++.. ..++.++.
T Consensus 297 ~~P~~GQG~n~al~DA~~La~~L~~~~~~g~-~~~~~~~L~~Ye~~R~~~~~-------~~~~~~~~~----~~~~~~~~ 364 (405)
T PRK05714 297 IHPLAGQGVNLGFLDAAVLAEVLLHAAERGE-RLADVRVLSRFERRRMPHNL-------ALMAAMEGF----ERLFQADP 364 (405)
T ss_pred CCCcccccccHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHCCCc
Confidence 9999999999999999999999988876552 12233567999965442221 222333322 45778888
Q ss_pred cHHHHHhhcChhh--hHhhHHHH
Q 008915 480 IIPSIFKQVGIPV--LVDWSGHF 500 (549)
Q Consensus 480 ll~~~~~~~g~~~--~~~~~~~~ 500 (549)
.+...+|+.++.. .+.+++.+
T Consensus 365 ~~~~~~R~~~l~~~~~~~~~k~~ 387 (405)
T PRK05714 365 LPLRWLRNTGLKLVDQMPEAKAL 387 (405)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHH
Confidence 8888889888875 34455543
No 9
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=2.4e-31 Score=287.11 Aligned_cols=358 Identities=16% Similarity=0.164 Sum_probs=220.0
Q ss_pred ccEEEEcch-HHHHHHHHHHh----CCCcEEEEccCCCCC-------------CCccccCCHHHHHHHHHcCCCCcccch
Q 008915 111 FDVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID 172 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr----~GlrVlLIEr~~~~~-------------~~r~~~IS~~~l~~L~~lGl~~~~eie 172 (549)
|||+||||| +|+++|+.|++ +|++|+||||++.+. ..+..+|++.+++.|+.+|+|+.. .
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l--~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHI--Q 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhh--h
Confidence 799999976 59999999998 899999999965332 235678999999999999998642 1
Q ss_pred hhhhhcc------C---CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcC---CEEEeCceEEEEEEE------
Q 008915 173 EATATKF------N---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY------ 234 (549)
Q Consensus 173 ~~i~~~~------~---~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G---~~v~~~t~v~~i~~~------ 234 (549)
..-...+ . ...+.|.... ....+++.+++..|.+.|.+++.+.+ ++++.+++|++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~ 155 (437)
T TIGR01989 79 SDRIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND 155 (437)
T ss_pred hhcCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC
Confidence 1100000 0 0112222111 11234678999999999999998775 799999999999752
Q ss_pred -CCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccC-CCceeeeeecCCcccccCCCC
Q 008915 235 -ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSE 309 (549)
Q Consensus 235 -~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~-~~~~~ei~~~~~~~~~~~~~~ 309 (549)
+++++|++.+|++++|++||+|||.+|.+|+++++... +.+.+.+.....+..+ .+...+.+...
T Consensus 156 ~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~---------- 225 (437)
T TIGR01989 156 NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT---------- 225 (437)
T ss_pred CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCC----------
Confidence 46788988889999999999999999999999987643 3333333222111111 11222333221
Q ss_pred ceeEEEEecCCCCCccceEEEEEccCCCC------CcccHHHHH-HHH---HHhCcc----------cc---cccC----
Q 008915 310 VQLFWEAFPAGSGPLDRTTYMFTYIDPQA------GSPKLEELL-ERY---WDLMPE----------YQ---GVTL---- 362 (549)
Q Consensus 310 ~~~~W~~fP~~~g~~~~~~~l~~~~~~~~------~~~~L~~l~-~~~---~~~lp~----------~~---~~~l---- 362 (549)
+.++ .+|..++ ....++....... ....+.+.+ +.+ ....|. +. ...+
T Consensus 226 -g~~~-~lPl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 300 (437)
T TIGR01989 226 -GPIA-LLPLPDN---NSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSK 300 (437)
T ss_pred -CCEE-EeECCCC---CEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 2233 3565544 2323333211000 001112212 111 000010 00 0000
Q ss_pred -----C-c-eeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhh
Q 008915 363 -----D-N-LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS 435 (549)
Q Consensus 363 -----~-~-~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~ 435 (549)
. . .++.......+|.....+.++..+|++|+|||||.+||++|||+|++++|+..|++.|.++++.+. +.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~-~~~~ 379 (437)
T TIGR01989 301 SCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGA-DIGS 379 (437)
T ss_pred cccccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCC-ChhH
Confidence 0 0 000111113456655556678889999999999999999999999999999999999999887653 3334
Q ss_pred hHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChhh--hHhhHHHH
Q 008915 436 LSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPV--LVDWSGHF 500 (549)
Q Consensus 436 l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~~--~~~~~~~~ 500 (549)
...|+.|++.+..... .++.+++.. ..++.++......+|..++.. -+.|++++
T Consensus 380 ~~~L~~Y~~~R~~~~~-------~v~~~t~~l----~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~ 435 (437)
T TIGR01989 380 ISSLKPYERERYAKNV-------VLLGLVDKL----HKLYATDFPPVVALRTFGLNLTNYIGPLKNF 435 (437)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHcCCccHHHHHHHHHHHHhhhCHHhHHh
Confidence 4568999965443322 223344433 456788888888888887764 34444443
No 10
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=6.6e-31 Score=280.84 Aligned_cols=349 Identities=16% Similarity=0.124 Sum_probs=213.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCC-----CCccccCCHHHHHHHHHcCCCCccc-chhhhhhc---
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKG-----REQEWNISRKELLELVESGILVEDD-IDEATATK--- 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~-----~~r~~~IS~~~l~~L~~lGl~~~~e-ie~~i~~~--- 178 (549)
.|||+||||| +|+++|+.|+++|++|+|+|+.. .+. ..+...|++++++.|+++|+|++.. ........
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 5899999976 59999999999999999999962 211 2355679999999999999986421 00000000
Q ss_pred cCC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 179 FNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 179 ~~~---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
++. +.+.|... .... ..+++.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|++++|++++||+||
T Consensus 84 ~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAE-SMAQ-PDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEecc-ccCC-CccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 011 12222211 1111 12456788899999999998775 689999999999999889999999889999999999
Q ss_pred EccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCce-eeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~-~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
+|||.+|.+|++++.+.. +.+.+.... +....+.... .+.+.. + +.+. .+|..++ ....+.
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~----------~-g~~~-~lp~~~~--~~~~~~ 226 (405)
T PRK08850 162 GADGANSWLRRQMDIPLTHWDYGHSALVAN-VRTVDPHNSVARQIFTP----------Q-GPLA-FLPMSEP--NMSSIV 226 (405)
T ss_pred EeCCCCChhHHHcCCCeeEEeeccEEEEEE-EEccCCCCCEEEEEEcC----------C-CceE-EEECCCC--CeEEEE
Confidence 999999999999987643 223332221 1111111111 112111 1 2222 4566543 122223
Q ss_pred EEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 331 ~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+.......+ ..+.+++.+...+.++.. +...+.... ...+|.......++..+|++|+|||||.+||++|||
T Consensus 227 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG 301 (405)
T PRK08850 227 WSTEPLRAEALLAMSDEQFNKALTAEFDNR----LGLCEVVGE-RQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQG 301 (405)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hCcEEEccc-ccEEecceeeccccccCcEEEEEhhhhcCCcccccc
Confidence 322110000 001122222222222110 111111111 123566554556788999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|++++|+..|++.|..++..+. +.+....|+.|++.+.... + .++.+++.. ..++.++......+|.
T Consensus 302 ~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~----~---~~~~~~~~l----~~~~~~~~~~~~~~R~ 369 (405)
T PRK08850 302 VNLGLLDAASLAQEILALWQQGR-DIGLKRNLRGYERWRKAEA----A---KMIAAMQGF----RDLFSGSNPAKKLVRG 369 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhHHH----H---HHHHHHHHH----HHHHCCCchHHHHHHH
Confidence 99999999999999988876542 2233456799996543222 2 222333322 3466677777777787
Q ss_pred cChhh
Q 008915 488 VGIPV 492 (549)
Q Consensus 488 ~g~~~ 492 (549)
.++..
T Consensus 370 ~~l~~ 374 (405)
T PRK08850 370 IGMSL 374 (405)
T ss_pred HHHHH
Confidence 77664
No 11
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=3.3e-31 Score=281.30 Aligned_cols=349 Identities=15% Similarity=0.126 Sum_probs=211.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-------CCccccCCHHHHHHHHHcCCCCcccchhhhhhccC-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEATATKFN- 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-------~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~- 180 (549)
.|||+||||| +|+++|+.|+++|++|+|+|+.+... ..++..|++++++.|+.+|+|+.. .......+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~--~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSI--VAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhh--hHhhCCccce
Confidence 4899999976 59999999999999999999875321 124457999999999999998642 111000010
Q ss_pred -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 181 -------~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
.....|.. ..+.. ..+++.+++..|.+.|.+++.+. +++++.++++++++.++++++|++++|.+++|++
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 81 LETWEHPECRTRFHS-DELNL-DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred EEEEeCCCceEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 01111111 11111 12356777778889999988665 5799999999999999999999999999999999
Q ss_pred EEEccCCChHHHHHhcCCC---CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~---~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|++|++++++. .+.+.+.++.......+.+...+.+...++.. ..|..++ ...+
T Consensus 159 vIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~------------~~pl~~~---~~~~ 223 (384)
T PRK08849 159 VIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRS------------FLPLCGN---QGSL 223 (384)
T ss_pred EEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEE------------EeEcCCC---ceEE
Confidence 9999999999999988653 23333333221111111111112221111111 1344322 1112
Q ss_pred EEEccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 330 l~~~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
++....... ...+.+++.+.+.+.+|.. +..+... ....+|.......++..+|++|+|||||.++|+.||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQ 297 (384)
T PRK08849 224 VWYDSPKRIKQLSAMNPEQLRSEILRHFPAE----LGEIKVL--QHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQ 297 (384)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHhhhh----hCcEEec--cceEeeccccccchhccCCEEEEEcccccCCCCccc
Confidence 221110000 0002233333333333321 1222222 123566655455678889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|++++|+..|++.+.. .+. ...+.|+.||+.+..... ..+.+++.. ..++.++..+...+|
T Consensus 298 G~n~al~Da~~L~~~l~~---~~~---~~~~~L~~Ye~~R~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~R 360 (384)
T PRK08849 298 GVNLGFKDVDVLLAETEK---QGV---LNDASFARYERRRRPDNL-------LMQTGMDLF----YKTFSNSLTPLKFVR 360 (384)
T ss_pred hHhHHHHHHHHHHHHHHh---cCC---CcHHHHHHHHHHHhHHHH-------HHHHHHHHH----HHHhcCCchHHHHHH
Confidence 999999999998876642 221 223457899965432211 112233322 457777777778888
Q ss_pred hcChhh--hHhhHHHH
Q 008915 487 QVGIPV--LVDWSGHF 500 (549)
Q Consensus 487 ~~g~~~--~~~~~~~~ 500 (549)
+.++.. .++++++.
T Consensus 361 ~~~l~~~~~~~~~k~~ 376 (384)
T PRK08849 361 NAALKLAENSGPLKTQ 376 (384)
T ss_pred HHHHHHHhccHHHHHH
Confidence 887775 45555544
No 12
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.98 E-value=1.3e-29 Score=273.80 Aligned_cols=307 Identities=17% Similarity=0.145 Sum_probs=188.2
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
...+|||+||||| +|+++|..||++|++|+|+||+..........|+. ..+.++|+++. .+........+.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~---~~l~~lgl~~~-----~~~~~i~~~~~~ 107 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPL---CMVGEFDLPLD-----IIDRKVTKMKMI 107 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccH---hHHhhhcCcHH-----HHHHHhhhheEe
Confidence 3447999999965 69999999999999999999986432222234654 35566777532 111111111111
Q ss_pred ccCCcccccc-----ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---CCEEEEEEcC-------C--cEE
Q 008915 186 FEGKGEIWVE-----DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KIL 248 (549)
Q Consensus 186 f~~~~~l~~~-----~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~d-------G--~~i 248 (549)
..+...+..+ ......++|..|+++|.+++.++|++++.+ +++++... ++.+.|++.+ | .++
T Consensus 108 ~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v 186 (450)
T PLN00093 108 SPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTL 186 (450)
T ss_pred cCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEE
Confidence 1111111111 111124899999999999999999999876 57777642 2456666532 3 479
Q ss_pred EcCEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec----cC-CCceeeeeecCCcccccCCCCceeEEEEecCCCCC
Q 008915 249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGP 323 (549)
Q Consensus 249 ~ArlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g----~~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~ 323 (549)
+||+||+|||++|.++++++.+.. ..+..+...... .+ +....++++... +.+ ..|.| +||.++.
T Consensus 187 ~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~p-----~~Y~W-ifP~g~~- 256 (450)
T PLN00093 187 EVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDD-VSP-----DFYGW-VFPKCDH- 256 (450)
T ss_pred EeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCC-CCC-----CceEE-EEECCCc-
Confidence 999999999999999999976532 222222111110 00 122345544332 222 47889 8999853
Q ss_pred ccceEEEEEccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 008915 324 LDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (549)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl 403 (549)
..+.+..... ..+++++++.+...+++. +...++.+...+.+|.. ...++..+|++|||||||+++|+
T Consensus 257 --~~VG~g~~~~----~~~~~~~~~~l~~~~~~~----l~~~~~~~~~~~~ip~~--~~~~~~~~~vlLvGDAAg~v~P~ 324 (450)
T PLN00093 257 --VAVGTGTVVN----KPAIKKYQRATRNRAKDK----IAGGKIIRVEAHPIPEH--PRPRRVRGRVALVGDAAGYVTKC 324 (450)
T ss_pred --EEEEEEEccC----CCChHHHHHHHHHHhhhh----cCCCeEEEEEEEEcccc--cccceeCCCcEEEeccccCCCcc
Confidence 3344433221 224444444333332211 11222334444566763 23466789999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 404 tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
+|+|++.+++++..+++.|.++++.+.. ..+.+.|+.|++.
T Consensus 325 tGeGI~~Am~sg~~AAe~i~~~~~~g~~-~~s~~~L~~Y~~~ 365 (450)
T PLN00093 325 SGEGIYFAAKSGRMCAEAIVEGSENGTR-MVDEADLREYLRK 365 (450)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCC-cCCHHHHHHHHHH
Confidence 9999999999999999999999987631 1123446889863
No 13
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.98 E-value=4.4e-30 Score=273.67 Aligned_cols=345 Identities=19% Similarity=0.189 Sum_probs=212.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCC---CCccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATAT--KF-N 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~---~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~--~~-~ 180 (549)
.|||+||||| +|+++|+.|+++| ++|+|+||++... ..+...|++++++.|+++|+++...-...... .+ .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 3899999975 5999999999995 9999999987643 23567899999999999999864210000000 00 0
Q ss_pred --C------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 181 --P------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 181 --~------~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
. ..+.|.+. ........+.+++..|.+.|.+++.+.|++++.+++|++++.+++++.|++++|.+++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 0 00111110 0011223457899999999999999889999999999999998899999988888999999
Q ss_pred EEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|.+++++++... +...+.++. .....+........+ . ..+++| .+|..++ ...+
T Consensus 159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~-----~~g~~~-~~Pl~~~---~~~~ 223 (403)
T PRK07333 159 LVAADGARSKLRELAGIKTVGWDYGQSGIVCT-VEHERPHGGRAEEHF-----L-----PAGPFA-ILPLKGN---RSSL 223 (403)
T ss_pred EEEcCCCChHHHHHcCCCcccccCCCEEEEEE-EEcCCCCCCEEEEEe-----C-----CCCceE-EeECCCC---CeEE
Confidence 99999999999999876532 222332221 111111111111111 1 134556 6888766 3333
Q ss_pred EEEccCCC------CCcc-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 008915 330 MFTYIDPQ------AGSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 330 l~~~~~~~------~~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (549)
.+...... .... ...++.+.|...++.+ ..... ...+|.......++..+|++|||||||.++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P 294 (403)
T PRK07333 224 VWTERTADAERLVALDDLVFEAELEQRFGHRLGEL--------KVLGK-RRAFPLGLTLARSFVAPRFALVGDAAHGIHP 294 (403)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCce--------EeccC-ccEeechhhhhhhccCCCEEEEechhhcCCC
Confidence 33321100 0000 1122222222222221 11111 0124444334456788999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHH
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIP 482 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~ 482 (549)
++|||+|++++|+..|++.|..+++.+. +......|+.|++.+......+ +..++.. ..++.++..+.
T Consensus 295 ~~GqG~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Ye~~R~~~~~~~-------~~~~~~~----~~~~~~~~~~~ 362 (403)
T PRK07333 295 IAGQGLNLGLKDVAALAEVVVEAARLGL-DIGSLDVLERYQRWRRFDTVRM-------GVTTDVL----NRLFSNDSTLL 362 (403)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHH-------HHHHHHH----HHHHcCCchHH
Confidence 9999999999999999999998886542 2223456789996443221111 1122211 34566666666
Q ss_pred HHHhhcChhh
Q 008915 483 SIFKQVGIPV 492 (549)
Q Consensus 483 ~~~~~~g~~~ 492 (549)
..+|+.++..
T Consensus 363 ~~~r~~~~~~ 372 (403)
T PRK07333 363 RSVRDIGLGL 372 (403)
T ss_pred HHHHHHHHHH
Confidence 6667665553
No 14
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=6.3e-30 Score=273.62 Aligned_cols=347 Identities=20% Similarity=0.203 Sum_probs=206.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC---CccccCCHHHHHHHHHcCCCCcccchhhhh--h--cc-
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATA--T--KF- 179 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~---~r~~~IS~~~l~~L~~lGl~~~~eie~~i~--~--~~- 179 (549)
.+|||+||||| +|+++|+.|+++|++|+|+||++.++. .+...+++..++.|.++|++++. ..... . .+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~~~~~~ 94 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI--LPQIGKFRQIRLS 94 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh--HhhcCCccEEEEE
Confidence 36999999965 699999999999999999999987642 24568999999999999998642 11100 0 00
Q ss_pred --C-CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcC-C--cEEEcCE
Q 008915 180 --N-PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHL 252 (549)
Q Consensus 180 --~-~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~d-G--~~i~Arl 252 (549)
. ...+.|.. ..+.. ...++.+.+..|.+.|.+++.+. +++++.++++++++.+++++.|++++ + .+++||+
T Consensus 95 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adl 172 (415)
T PRK07364 95 DADYPGVVKFQP-TDLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKL 172 (415)
T ss_pred eCCCCceeeecc-ccCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeE
Confidence 0 00111110 01111 11234455557888999988775 67999999999999888888888863 2 3699999
Q ss_pred EEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|.+|++++.... +...|..........+.....+.+. ..+++| .+|..++ ...+
T Consensus 173 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~---~~~~ 237 (415)
T PRK07364 173 VVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFW-----------PSGPFA-ILPLPGN---RCQI 237 (415)
T ss_pred EEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEec-----------CCCCeE-EeECCCC---CEEE
Confidence 99999999999999876432 1122221111110000111111111 123455 6788755 2333
Q ss_pred EEEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 330 l~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
++.......+ ..+.+++.+.+.+.++.. +.+++.... ...+|.......++..+|++|||||||.++|++||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq 312 (415)
T PRK07364 238 VWTAPHAQAKALLALPEAEFLAELQQRYGDQ----LGKLELLGD-RFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQ 312 (415)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhh----hcCceecCC-CceecchhhhhhhhcCCcEEEEecccccCCCcccc
Confidence 3322110000 001122222222222211 011111111 11345544344567889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|++++|+..|++.+..+++.+. +..+.+.|+.|++.+.... . .++.+++.. ..++.++..+...+|
T Consensus 313 G~n~al~DA~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~----~---~~~~~s~~~----~~~~~~~~~~~~~~r 380 (415)
T PRK07364 313 GLNLGIRDAAALAQVLQTAHQRGE-DIGSLAVLKRYERWRKREN----W---LILGFTDLL----DRLFSNQWWPLVVVR 380 (415)
T ss_pred cHhHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHH----H---HHHHHHHHH----HHHHcCCchHHHHHH
Confidence 999999999999999988875432 2222356789996433221 1 112222222 345677777777777
Q ss_pred hcChh
Q 008915 487 QVGIP 491 (549)
Q Consensus 487 ~~g~~ 491 (549)
+.++.
T Consensus 381 ~~~~~ 385 (415)
T PRK07364 381 RLGLW 385 (415)
T ss_pred HHHHH
Confidence 76555
No 15
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=4.9e-29 Score=265.90 Aligned_cols=311 Identities=23% Similarity=0.300 Sum_probs=208.2
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCcc--ccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~--~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
.+|||||||| |+|+++|+.||++|++|+|+||+..++.+.+ ..+++..++.+ ......+ +........+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l---~~~~~~~----i~~~v~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL---IPDFDEE----IERKVTGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh---CCCcchh----hheeeeeeEEE
Confidence 3799999995 5699999999999999999999999887543 35666655544 2211111 22222222233
Q ss_pred ccCCc-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCChHH
Q 008915 186 FEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 186 f~~~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~S~v 263 (549)
+.+.. .+..+...++.|++..|+++|.+++.++|++++.+++++++..+++++++.+..+ .+++||+||+|||.+|.+
T Consensus 75 ~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 75 FPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred ecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 33111 1222223478899999999999999999999999999999999998887776544 689999999999999999
Q ss_pred HHHhcCCC-CCCceeeEEeEeeeccC-CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcc
Q 008915 264 VKQIRSGR-KPDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP 341 (549)
Q Consensus 264 rrql~~~~-~~~~~~~~vg~~~~g~~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~ 341 (549)
++.++... ++......+... ...+ +....+.++...... ..+|.| .||.+++. ....+..........+
T Consensus 155 ~~~lg~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~-----~~Gy~w-ifP~~~~~--~~VG~g~~~~~~~~~~ 225 (396)
T COG0644 155 ARKLGLKDRKPEDYAIGVKEV-IEVPDDGDVEEFLYGPLDVG-----PGGYGW-IFPLGDGH--ANVGIGVLLDDPSLSP 225 (396)
T ss_pred HHHhCCCCCChhheeEEeEEE-EecCCCCceEEEEecCCccC-----CCceEE-EEECCCce--EEEEEEEecCCcCCCc
Confidence 99998762 222222111111 1222 122223332211122 368999 89999762 3444443333211223
Q ss_pred cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 008915 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 421 (549)
Q Consensus 342 ~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~ 421 (549)
.. +++++|....+. .....+ .+......+.+|.......+.+.+++++|||||++++|++|+|+..++..+..+++.
T Consensus 226 ~~-~~l~~f~~~~~~-~~~~~~-~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~ 302 (396)
T COG0644 226 FL-ELLERFKEHPAI-RKLLLG-GKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEA 302 (396)
T ss_pred hH-HHHHHHHhCccc-chhccC-CceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHH
Confidence 44 788888765432 221111 233445567888876433337889999999999999999999999999999999999
Q ss_pred HHHHHhCCCCChhhhHhhhhhhh
Q 008915 422 VYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 422 i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
|.++++.+ ... |..|++
T Consensus 303 i~~~~~~~---~~~---l~~Y~~ 319 (396)
T COG0644 303 IAEALEGG---EEA---LAEYER 319 (396)
T ss_pred HHHHHHcC---hhH---HHHHHH
Confidence 99999876 233 456874
No 16
>PRK06996 hypothetical protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=268.66 Aligned_cols=349 Identities=13% Similarity=0.117 Sum_probs=208.6
Q ss_pred CCCCcccEEEEcch-HHHHHHHHHHhCC----CcEEEEccCCCCC---CCccccCCHHHHHHHHHcCCCCccc--chhhh
Q 008915 106 KAVGTFDVIVCGGT-LGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDD--IDEAT 175 (549)
Q Consensus 106 ~~~~~yDVIIVGGg-~G~~~Aa~LAr~G----lrVlLIEr~~~~~---~~r~~~IS~~~l~~L~~lGl~~~~e--ie~~i 175 (549)
+.+..|||+||||| +|+++|+.|+++| ++|+|+|+.+.+. ..+...+++.+++.|+++|+|+... ++.+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 45567999999975 6999999999987 5799999986543 2367789999999999999997521 11111
Q ss_pred hhcc-CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcC
Q 008915 176 ATKF-NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSH 251 (549)
Q Consensus 176 ~~~~-~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~Ar 251 (549)
..+. ..+...|.. .....+ .+++.+++..|.+.|.+++.+.|++++.++++++++.++++++++++++ ++++||
T Consensus 87 ~~~~~~~g~~~~~~-~~~~~~-~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~ 164 (398)
T PRK06996 87 VSQRGHFGRTLIDR-DDHDVP-ALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRAR 164 (398)
T ss_pred EecCCCCceEEecc-cccCCC-cCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeee
Confidence 1110 111222221 111122 2467899999999999999999999999999999999999999998754 589999
Q ss_pred EEEEccCC-ChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccce
Q 008915 252 LIIDAMGN-FSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (549)
Q Consensus 252 lVI~ADG~-~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (549)
+||+|||. .|.++++++.... +.+.+.+.....+..+.....+.+...++ + ..+|..++.....
T Consensus 165 lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~----------~--~~lp~~~~~~~~~ 232 (398)
T PRK06996 165 IAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGP----------L--ALLPLGGPRQADY 232 (398)
T ss_pred EEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCC----------e--EEeECCCCCCCcE
Confidence 99999997 5778888766532 22334322111111111111111111111 1 1345543210012
Q ss_pred EEEEEccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 008915 328 TYMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (549)
Q Consensus 328 ~~l~~~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plt 404 (549)
.+++....... ...+.++..+.+.+.++.. +..+...... ..+|.+.....++..+||+|+|||||.+||++
T Consensus 233 ~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~ 307 (398)
T PRK06996 233 ALVWCCAPDEAARRAALPDDAFLAELGAAFGTR----MGRFTRIAGR-HAFPLGLNAARTLVNGRIAAVGNAAQTLHPVA 307 (398)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHhccc----cCceEEecce-EEEeeecccccceecCCEEEEEhhhccCCccc
Confidence 22222211000 0001112222222222110 1112111111 13566655556788899999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHH
Q 008915 405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSI 484 (549)
Q Consensus 405 g~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~ 484 (549)
|||+|++++|+..|++.|.. .+. . ...|..|++.+..... .++.+++.. ..++.++..+...
T Consensus 308 GQG~n~ai~Da~~La~~L~~---~~~-~---~~~L~~Y~~~R~~~~~-------~~~~~s~~l----~~~~~~~~~~~~~ 369 (398)
T PRK06996 308 GQGLNLGLRDAHTLADALSD---HGA-T---PLALATFAARRALDRR-------VTIGATDLL----PRLFTVDSRPLAH 369 (398)
T ss_pred chhHHHHHHHHHHHHHHHHh---cCC-c---HHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHcCCchHHHH
Confidence 99999999999999988854 222 2 2347899964432211 222333332 3456666667777
Q ss_pred HhhcChh
Q 008915 485 FKQVGIP 491 (549)
Q Consensus 485 ~~~~g~~ 491 (549)
+|+.++.
T Consensus 370 ~R~~~l~ 376 (398)
T PRK06996 370 LRGAALT 376 (398)
T ss_pred HHhHHHH
Confidence 7777665
No 17
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=2.3e-29 Score=267.24 Aligned_cols=358 Identities=18% Similarity=0.181 Sum_probs=213.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC------CCccccCCHHHHHHHHHcCCCCcccchhh-hhhc---
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG------REQEWNISRKELLELVESGILVEDDIDEA-TATK--- 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~------~~r~~~IS~~~l~~L~~lGl~~~~eie~~-i~~~--- 178 (549)
+|||+||||| +|+++|+.|+++|++|+|+||.+.++ ..+...|++..++.|+++|+++...-... ....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 5999999976 59999999999999999999998743 12345688889999999999754211100 0000
Q ss_pred cC---CCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 179 ~~---~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
+. ...+.|... . .....+++.+++..+.+.|.+++.+ .|++++.+++|++++.+++++.|++++|++++||+||
T Consensus 83 ~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDAR-G-RGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehh-h-cCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence 00 011112110 0 0112235668888899999988854 5889999999999998888888988888899999999
Q ss_pred EccCCChHHHHHhcCCCCCC---ceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 255 DAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~~~---~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
+|||.+|.+++++++..... ..+.. .......++......++ + ..+.+| .||..++ ...+.+
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~-~~~~~~-~~P~~~~---~~~~~~ 225 (392)
T PRK09126 161 AADSRFSATRRQLGIGADMHDFGRTMLV-CRMRHELPHHHTAWEWF---------G-YGQTLA-LLPLNGH---LSSLVL 225 (392)
T ss_pred EeCCCCchhhHhcCCCccccccCCeEEE-EEEeccCCCCCEEEEEe---------c-CCCCeE-EeECCCC---CEEEEE
Confidence 99999999999987654321 11211 11111111111000000 0 123455 6888765 334444
Q ss_pred EccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 332 ~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
........ ..+.+++.++..+.++.. +........ ...+|.......++..+|++|+|||||.++|++|||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 300 (392)
T PRK09126 226 TLPPDQIEALLALDPEAFAAEVTARFKGR----LGAMRLVSS-RHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGF 300 (392)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-CcEeechHHHHHHHhhcceEEEehhhhcCCCcccchh
Confidence 33221000 001122222211222111 111111111 1234444333446778999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhc
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQV 488 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~ 488 (549)
|++++|+..|++.|..+++.+. +....+.|+.|++........... .++. +..++.++......+|+.
T Consensus 301 ~~ai~da~~la~~L~~~~~~~~-~~~~~~~l~~Y~~~r~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~r~~ 368 (392)
T PRK09126 301 NLGLKGQDILARLILAAARRGQ-DIGAASLLERYERKHRLATRPLYH-------ATNA----IAALYTDDRPPARLLRRA 368 (392)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHCCCchHHHHHHHH
Confidence 9999999999999998886431 112234568999654433222221 2221 234566666666677776
Q ss_pred Chhhh--HhhHHHHH
Q 008915 489 GIPVL--VDWSGHFF 501 (549)
Q Consensus 489 g~~~~--~~~~~~~~ 501 (549)
.+..+ .+|++.++
T Consensus 369 ~~~~~~~~~~~~~~~ 383 (392)
T PRK09126 369 VLRAANRFPPLKQAI 383 (392)
T ss_pred HHHHHhhChHHHHHH
Confidence 66543 34555443
No 18
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=2.1e-28 Score=260.24 Aligned_cols=297 Identities=18% Similarity=0.151 Sum_probs=188.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
||||||||| +|+++|..||++|++|+|+||+ +.+.. ..+.|+.. .+.++|+.+ +.+...+....+....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~-cg~~i~~~---~l~~l~i~~-----~~~~~~~~~~~~~~~~ 71 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKP-CGGAIPPC---LIEEFDIPD-----SLIDRRVTQMRMISPS 71 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc-CcCCcCHh---hhhhcCCch-----HHHhhhcceeEEEcCC
Confidence 799999965 6999999999999999999998 32222 34567764 456667653 2222222211111111
Q ss_pred Cccc--cccccccc--eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC------C--cEEEcCEEEEc
Q 008915 189 KGEI--WVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDA 256 (549)
Q Consensus 189 ~~~l--~~~~~l~~--~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d------G--~~i~ArlVI~A 256 (549)
+..+ ..+...++ .+++..|++.|.+++.+.|++++.+ +|+++..+++++.|++.+ | .+++||+||+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~A 150 (388)
T TIGR02023 72 RVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGA 150 (388)
T ss_pred CceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEEC
Confidence 1111 11111123 5899999999999999999999765 699998888888887653 2 37999999999
Q ss_pred cCCChHHHHHhcCCCCCCceeeEEeEeeec----cC-CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 257 MGNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 257 DG~~S~vrrql~~~~~~~~~~~~vg~~~~g----~~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
||.+|.++++++.+.+.. ....+...... .. +.+..++++.. ++.+ .+|.| .||.++. ....+.
T Consensus 151 dG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-----~~y~w-v~P~~~~---~~vg~~ 219 (388)
T TIGR02023 151 DGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGG-EVSP-----DFYGW-VFPKGDH---IAVGTG 219 (388)
T ss_pred CCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECC-CcCC-----CceEE-EeeCCCe---eEEeEE
Confidence 999999999998753321 11111111110 00 12233443332 2222 36899 8999753 333332
Q ss_pred EccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 332 ~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
... ...+.+++++.+.+.++ + ...+..+...+.+|.. ...++..+|+++||||||+++|++|+|++.+
T Consensus 220 ~~~----~~~~~~~~~~~l~~~~~-~-----~~~~~~~~~~~~ip~~--~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A 287 (388)
T TIGR02023 220 TGT----HGFDAKQLQANLRRRAG-L-----DGGQTIRREAAPIPMK--PRPRWDFGRAMLVGDAAGLVTPASGEGIYFA 287 (388)
T ss_pred ECC----CCCCHHHHHHHHHHhhC-C-----CCceEeeeeeEecccc--ccccccCCCEEEEeccccCcCCcccccHHHH
Confidence 221 12245555555555433 1 1111222233456663 2235667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
++++..+++.|.++++.++ .+.|+.|++.
T Consensus 288 ~~sg~~aa~~i~~~l~~~~-----~~~L~~Y~~~ 316 (388)
T TIGR02023 288 MKSGQMAAQAIAEYLQNGD-----ATDLRHYERK 316 (388)
T ss_pred HHHHHHHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence 9999999999999998653 2346889953
No 19
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=2.5e-28 Score=260.52 Aligned_cols=340 Identities=16% Similarity=0.139 Sum_probs=199.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
+|||||||| +|+++|..||++|++|+||||++.........|+. ..|.++|++.. .+....+...+...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~---~~l~~~g~~~~-----~~~~~i~~~~~~~p~~ 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPL---CMVDEFALPRD-----IIDRRVTKMKMISPSN 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccH---hhHhhccCchh-----HHHhhhceeEEecCCc
Confidence 699999965 69999999999999999999986533222234654 34667787532 2221121111110011
Q ss_pred cccccc---cccc--ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE---ECCEEEEEE--cC-----C--cEEEcCE
Q 008915 190 GEIWVE---DILN--LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLL--AE-----G--KILSSHL 252 (549)
Q Consensus 190 ~~l~~~---~~l~--~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~---~~dgv~V~~--~d-----G--~~i~Arl 252 (549)
..+... ...+ ..+++..|++.|.+++.++|++++.++ ++++.. .++.+.|++ .+ | .+++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~ 151 (398)
T TIGR02028 73 IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA 151 (398)
T ss_pred eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence 111110 0112 358999999999999999999998885 777643 234455553 22 3 3799999
Q ss_pred EEEccCCChHHHHHhcCCCCCCceeeEEeEeeeccC------CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 253 IIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g~~------~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
||+|||.+|.++++++.+.. ..+..+....+ ++ +.+..++++.. .+.| .+|.| +||.++. .
T Consensus 152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~p-----~gY~W-ifP~~~~---~ 218 (398)
T TIGR02028 152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIR-LPDEKMAYYDDLAEMYVGD-DVSP-----DFYGW-VFPKCDH---V 218 (398)
T ss_pred EEECCCcchHHHHHhCCCCc--ceEEEEEEEee-CChhhcccCCCeEEEEeCC-CCCC-----CceEE-EEECCCe---E
Confidence 99999999999999976432 22222222221 11 11233444432 2222 46999 8999853 3
Q ss_pred eEEEEEccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 327 TTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 327 ~~~l~~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+.+.... ....++++.+.+....+. . +...+..+...+.+|.. ...++..+|++|||||||++||++|+
T Consensus 219 ~VG~g~~~----~~~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~ip~~--~~~~~~~~~~llvGDAAg~v~P~tGe 288 (398)
T TIGR02028 219 AVGTGTVA----AKPEIKRLQSGIRARAAG--K--VAGGRIIRVEAHPIPEH--PRPRRVVGRVALVGDAAGYVTKCSGE 288 (398)
T ss_pred EEEEEeCC----CCccHHHHHHhhhhhhhh--c--cCCCcEEEEEEEecccc--ccccEECCCEEEEEcCCCCCCccccc
Confidence 33332221 122344433322211111 0 11112223334566764 23466789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|++.+++++..+++.+.++++.++.. .+...|+.|+++-++.+...++ +...++ +.+.++...+..++.
T Consensus 289 GI~~A~~sg~~aa~~i~~~~~~~~~~-~~~~~l~~Y~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~ 357 (398)
T TIGR02028 289 GIYFAAKSGRMCAEAIVEESRLGGAV-TEEGDLAGYLRRWDKEYRPTYR-------VLDLLQ---RVFYRSNAGREAFVE 357 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHcCCcHHHHHHHH
Confidence 99999999999999999999876521 1223457899643322222222 222222 344456666666666
Q ss_pred hcChhhh
Q 008915 487 QVGIPVL 493 (549)
Q Consensus 487 ~~g~~~~ 493 (549)
.+.-..+
T Consensus 358 ~~~~~~~ 364 (398)
T TIGR02028 358 MCADEHV 364 (398)
T ss_pred HhcCcch
Confidence 6644433
No 20
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=2.5e-28 Score=257.92 Aligned_cols=311 Identities=18% Similarity=0.188 Sum_probs=196.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC------CccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF----- 179 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~----- 179 (549)
||+||||| +|+++|..|+++|++|+|+||++.++. .+...+++..+..|.++|++++. ........
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKI--EPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhh--hhhcCCCceEEEE
Confidence 89999975 599999999999999999999987643 25578999999999999998542 22011111
Q ss_pred -CCC---cccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 180 -NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 180 -~~~---~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
... .+.+... .. .....++.+++..|.+.|.+.+.+.| ++++.+++|+++..+++++.|++++|++++||+||
T Consensus 79 ~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi 156 (385)
T TIGR01988 79 SDGGSFGALHFDAD-EI-GLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV 156 (385)
T ss_pred EeCCCCceEEechh-hc-CCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence 110 1111100 00 01123467899999999999998887 89999999999998888999988889899999999
Q ss_pred EccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 255 DAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
+|||.+|.++++++...+. ...+.+.. .....+........ +. ..+++| .||..++ ...+.+
T Consensus 157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~-----~~g~~~-~~p~~~~---~~~~~~ 221 (385)
T TIGR01988 157 GADGANSKVRQLAGIPTTGWDYGQSAVVAN-VKHERPHQGTAWER-----FT-----PTGPLA-LLPLPDN---RSSLVW 221 (385)
T ss_pred EeCCCCCHHHHHcCCCccccccCCeEEEEE-EEecCCCCCEEEEE-----ec-----CCCCEE-EeECCCC---CeEEEE
Confidence 9999999999998754321 12222111 11000010000000 11 123455 6888765 333333
Q ss_pred EccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 332 ~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
...+.... ..+.+++.+.+.+.++... .++.... ....+|.......++..+|++|+|||||.++|++|+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~ 296 (385)
T TIGR01988 222 TLPPEEAERLLALSDEEFLAELQRAFGSRL----GAITLVG-ERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL 296 (385)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhhc----CceEecc-CcceeechhhhhhheecCceEEEecccccCCccccchh
Confidence 33221000 0122333333333322211 1111111 12345654434446778999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
+++++|+..|++.|.++++.+. +......|+.|++...
T Consensus 297 ~~Ai~da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~r~ 334 (385)
T TIGR01988 297 NLGLRDVAALAEVLEDARRRGE-DIGSPRVLQRYERRRR 334 (385)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHH
Confidence 9999999999999998876441 1122345689995443
No 21
>PLN02463 lycopene beta cyclase
Probab=99.97 E-value=4e-28 Score=261.53 Aligned_cols=362 Identities=16% Similarity=0.158 Sum_probs=236.4
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
...|||+||||| +|+++|+.|+++|++|+|||+.+.....+.|.++. ..+.++|+.+ .+...+....+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~---~~l~~lgl~~------~l~~~w~~~~v~~ 96 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWV---DEFEALGLLD------CLDTTWPGAVVYI 96 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHH---HHHHHCCcHH------HHHhhCCCcEEEE
Confidence 346999999965 69999999999999999999986543333444433 3566677632 2222332222323
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
...........+ ..|++..|++.|.+++.+.|++++ .++|++++.+++++.|++++|++++||+||+|||.+|++.+.
T Consensus 97 ~~~~~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~ 174 (447)
T PLN02463 97 DDGKKKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQY 174 (447)
T ss_pred eCCCCccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCC
Confidence 221111111111 248999999999999988899886 579999999888999999889899999999999999987642
Q ss_pred hcCCCCCCceeeEEeEeee----ccCCCceeeeeecCCcccc--------cCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 267 IRSGRKPDGVCLVVGSCAR----GFKDNSTSDVIYSSSSVKK--------VGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 267 l~~~~~~~~~~~~vg~~~~----g~~~~~~~ei~~~~~~~~~--------~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
.....+ ......+...+ .++ .+ ..++.++..... ......++.| ++|.+++ . .+ +...
T Consensus 175 -~~~~~~-g~Q~a~Gi~~ev~~~p~d-~~-~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY-~~P~~~~---~-~~-vEeT 244 (447)
T PLN02463 175 -DKPFNP-GYQVAYGILAEVDSHPFD-LD-KMLFMDWRDSHLGNNPELRARNSKLPTFLY-AMPFSSN---R-IF-LEET 244 (447)
T ss_pred -CCCCCc-cceeeeeEEeecCCCCcc-cc-cchhhhcChhhccccchhhhccCCCCceEE-EEecCCC---e-EE-EEee
Confidence 111111 11001122221 111 10 111111111100 0000145777 8999865 2 11 1111
Q ss_pred ----CCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhh
Q 008915 335 ----DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (549)
Q Consensus 335 ----~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~ 410 (549)
........+++.+.++++.++ +...++.+.+.+.||.... .+...+|+++|||||+++||.||.||..
T Consensus 245 ~l~s~~~~~~~~lk~~L~~~l~~~G------i~~~~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~~i~~ 316 (447)
T PLN02463 245 SLVARPGLPMDDIQERMVARLRHLG------IKVKSVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGYMVAR 316 (447)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHCC------CCcceeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccccHHH
Confidence 111111256666666665432 2223445566788998643 3445789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCC--------ChhhhHhhhhhh-------------------------------hcCcccch
Q 008915 411 LTRHLGRLSTGVYEAVRGDFV--------DSYSLSLLNPYM-------------------------------KLGDPVLR 451 (549)
Q Consensus 411 ~lrd~~~La~~i~~Al~~g~l--------~~~~l~~L~~Y~-------------------------------~l~d~~~~ 451 (549)
+++.+..+++.|.++++++.. +....+.|.+|+ +|.++.++
T Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~ 396 (447)
T PLN02463 317 TLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWH 396 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHcc
Confidence 999999999999999997764 233334555555 56667777
Q ss_pred hHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChhhhHhhHHHHH
Q 008915 452 PFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF 501 (549)
Q Consensus 452 ~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~~~~~~~~~~~ 501 (549)
.|+. +.+.+.+|+.+++..+...|+-+.+-+-..|...++.+++.+.
T Consensus 397 gfl~---~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~ 443 (447)
T PLN02463 397 GFLS---SRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLI 443 (447)
T ss_pred cccc---CCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhc
Confidence 7777 7777888888888888888999999888899998888888764
No 22
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=1e-29 Score=263.56 Aligned_cols=313 Identities=20% Similarity=0.226 Sum_probs=183.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|+++|+.|+++|++|+||||.+.+... +...+++..++.|.++|+++. +..... ........+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~~-~~~~~~~~~~ 77 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDE--ILARGS-PHEVMRIFFY 77 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHH--HHHHSE-EECEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhh--hhhhcc-cccceeeEee
Confidence 4899999976 5999999999999999999999876543 456788999999999998743 111100 0000000000
Q ss_pred C--------------Cccc--cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---Cc--
Q 008915 188 G--------------KGEI--WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK-- 246 (549)
Q Consensus 188 ~--------------~~~l--~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~-- 246 (549)
. ...+ ..+......+++..|++.|.+.+.+.|++++.+++++++..+++++.+.+.+ |+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~ 157 (356)
T PF01494_consen 78 DGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEE 157 (356)
T ss_dssp EETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEE
T ss_pred cccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCcee
Confidence 0 0001 1111223568999999999999999999999999999999999998776643 33
Q ss_pred EEEcCEEEEccCCChHHHHHhcCCCCCCcee---eEEeEeee-ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCC
Q 008915 247 ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC---LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG 322 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrql~~~~~~~~~~---~~vg~~~~-g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g 322 (549)
+++||+||+|||.+|.+|++++...+....+ ........ .+++......+.. .. ..+.+| .+|..++
T Consensus 158 ~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~-~~p~~~~ 228 (356)
T PF01494_consen 158 TIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIY---SP-----PSGGFA-IIPLENG 228 (356)
T ss_dssp EEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEE---EE-----TTEEEE-EEEETTT
T ss_pred EEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccc---cc-----ccccee-EeeccCC
Confidence 7999999999999999999987552211111 11111111 1111100111111 01 234444 6787753
Q ss_pred CccceEEEEE--ccCCCCCc--c-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCC
Q 008915 323 PLDRTTYMFT--YIDPQAGS--P-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDAS 397 (549)
Q Consensus 323 ~~~~~~~l~~--~~~~~~~~--~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA 397 (549)
. ...+++. ........ . ..+++++.+....... .. ...+... ..+|.......++..+||+||||||
T Consensus 229 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~~~~grv~LiGDAA 300 (356)
T PF01494_consen 229 D--RSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPD-LL---ETEIDEI--SAWPIPQRVADRWVKGRVLLIGDAA 300 (356)
T ss_dssp T--EEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTC-HH---HHEEEEE--EEEEEEEEEESSSEETTEEE-GGGT
T ss_pred c--cceEEEeeecccccccccccccccccccccccccccc-cc---ccccccc--cccccccccccccccceeEEeccce
Confidence 1 2222222 22211111 1 2223332222221110 00 1111111 1233332233467779999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 398 GIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 398 ~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
|.++|++|+|+|.++.|+..|++.|..+++. ... -+.|+.|++.+
T Consensus 301 h~~~P~~GqG~n~Ai~da~~La~~L~~~~~g-~~~---~~~l~~Y~~~r 345 (356)
T PF01494_consen 301 HAMDPFSGQGINMAIEDAAALAELLAAALKG-EAS---EEALKAYEQER 345 (356)
T ss_dssp EEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT-SSH---HHHHHHHHHHH
T ss_pred eeecccccCCCCcccccHHHHHHHHHHHhcC-CcH---HHHHHHHHHHH
Confidence 9999999999999999999999999988763 212 24578999533
No 23
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.96 E-value=7e-28 Score=254.89 Aligned_cols=345 Identities=17% Similarity=0.170 Sum_probs=203.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCCCCCC-----ccccCCHHHHHHHHHcCCCCcccchhhhhhcc---CC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATKF---NP 181 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~~~~~-----r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~---~~ 181 (549)
||+||||| +|+++|+.|+++| ++|+|+||.+.++.. +...++++.++.|+++|+++...-........ ..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 89999975 5999999999999 999999999876542 44678999999999999985421000000000 00
Q ss_pred ---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 182 ---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 182 ---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
..+.+.. ..... ...++.+++..|.+.|.+++.+. |++++.+++|+++..++++++|++++|.+++||+||+||
T Consensus 81 ~~~~~~~~~~-~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRA-SEFGL-PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEech-hhcCC-CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 0111110 00111 12346789999999999999884 899999999999998889999998888899999999999
Q ss_pred CCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 258 GNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 258 G~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
|.+|.+++++++.... .+.+.... +....+.... .+.. +. ..+.++ .+|..++. ...+.+...
T Consensus 159 G~~S~vr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~---~~-----~~g~~~-~~p~~~~~--~~~~~~~~~ 224 (382)
T TIGR01984 159 GANSKVRELLSIPTEEHDYNQTALIAN-IRHEQPHQGC--AFER---FT-----PHGPLA-LLPLKDNY--RSSLVWCLP 224 (382)
T ss_pred CCChHHHHHcCCCCcccccCCEEEEEE-EEecCCCCCE--EEEe---eC-----CCCCeE-ECcCCCCC--CEEEEEECC
Confidence 9999999998765322 12222211 1111111000 0000 00 112233 57776541 233333321
Q ss_pred CCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 335 DPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 335 ~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
..... ....++..+.+.+.++.. +.++..... ...+|.......++..+|++|||||||.++|++|||+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 299 (382)
T TIGR01984 225 SKQADTIANLPDAEFLAELQQAFGWR----LGKITQVGE-RKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLG 299 (382)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-ccEeecchhhhhheecCCEEEEeecccccCCccccchhhh
Confidence 10000 011122222222222110 111111111 1234444334446677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChh
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP 491 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~ 491 (549)
++|+..|++.|..++. + . ..-..|+.|++......... +.+++. +..++.+|......+|+..+.
T Consensus 300 l~Da~~La~~L~~~~~-~-~--~~~~~l~~Y~~~r~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~r~~~~~ 364 (382)
T TIGR01984 300 LRDVETLAEVLIDARI-D-L--GTYALLQEYLRRRQFDQFIT-------IGLTDG----LNRLFSNHIPLLRALRNLGLL 364 (382)
T ss_pred HHHHHHHHHHHHHhcc-C-c--cCHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHcCCchHHHHHHHHHHH
Confidence 9999999998877651 1 1 22344689995433221111 112221 134566676666666666555
Q ss_pred h
Q 008915 492 V 492 (549)
Q Consensus 492 ~ 492 (549)
.
T Consensus 365 ~ 365 (382)
T TIGR01984 365 A 365 (382)
T ss_pred H
Confidence 3
No 24
>PRK06834 hypothetical protein; Provisional
Probab=99.96 E-value=8.6e-28 Score=262.57 Aligned_cols=308 Identities=19% Similarity=0.223 Sum_probs=195.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC--CCccccCCHHHHHHHHHcCCCCcccchhhh-hhc-cCCCcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEAT-ATK-FNPNRC 184 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~--~~r~~~IS~~~l~~L~~lGl~~~~eie~~i-~~~-~~~~~i 184 (549)
++||+||||| +|+++|+.|+++|++|+||||.+.+. ..+...+++.+++.|+++|++++. .... ... ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l--~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRF--LAQGQVAQVTGFAAT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHH--HhcCCccccceeeeE
Confidence 5899999965 69999999999999999999988653 235667999999999999997532 1110 000 000111
Q ss_pred cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 185 ~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
.+.. ..+..+..+++.+.+..+.+.|.+++.+.|++++.+++++++..+++++.|++.+|++++|++||+|||.+|.+|
T Consensus 81 ~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 81 RLDI-SDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred eccc-ccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 1110 111122234566788899999999999889999999999999999999999887888999999999999999999
Q ss_pred HHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCC-CCCccceEEEEEccCCCC-C
Q 008915 265 KQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAG-SGPLDRTTYMFTYIDPQA-G 339 (549)
Q Consensus 265 rql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~-~g~~~~~~~l~~~~~~~~-~ 339 (549)
+++++..+ +...+.++... .++........ . ..+.+. .+|.. ++ ...+++....... .
T Consensus 160 ~~lgi~~~g~~~~~~~~~~dv~---~~~~~~~~~~~-----~-----~~g~~~-~~~~~~~~---~~~~~~~~~~~~~~~ 222 (488)
T PRK06834 160 KAAGIDFPGWDPTTSYLIAEVE---MTEEPEWGVHR-----D-----ALGIHA-FGRLEDEG---PVRVMVTEKQVGATG 222 (488)
T ss_pred hhcCCCCCCCCcceEEEEEEEE---ecCCCCcceee-----C-----CCceEE-EeccCCCC---eEEEEEecCCCCCCC
Confidence 99976543 22222211111 11000000000 0 112221 24433 22 2222222211111 1
Q ss_pred cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHH
Q 008915 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419 (549)
Q Consensus 340 ~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La 419 (549)
..+.+++.+.+.+.++.- .......+. ..++.....+.++..+||+|+|||||.++|+.|||+|++++|+..|+
T Consensus 223 ~~~~~~~~~~l~~~~g~~--~~~~~~~~~----~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLa 296 (488)
T PRK06834 223 EPTLDDLREALIAVYGTD--YGIHSPTWI----SRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLG 296 (488)
T ss_pred CCCHHHHHHHHHHhhCCC--CccccceeE----EeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHH
Confidence 224455544444444311 111111111 22344334456788899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 420 TGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 420 ~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
..|...++.. + .-..|..|++.+.
T Consensus 297 wkLa~vl~g~--~--~~~lLd~Ye~eRr 320 (488)
T PRK06834 297 WKLAQVVKGT--S--PESLLDTYHAERH 320 (488)
T ss_pred HHHHHHHcCC--C--cHHHHHHHHHHHH
Confidence 9888887642 1 2356789995433
No 25
>PRK07045 putative monooxygenase; Reviewed
Probab=99.96 E-value=1e-27 Score=254.58 Aligned_cols=348 Identities=15% Similarity=0.179 Sum_probs=204.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF- 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f- 186 (549)
.+||+||||| +|+++|+.|+++|++|+|+||.+.++.. +...|++..++.|+++|+++.. ........ ..+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~--~~~~~~~~--~~~~~~ 80 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV--FAAGGLRR--DAMRLY 80 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHH--Hhcccccc--cceEEe
Confidence 6999999975 5999999999999999999999876532 3345888999999999998542 11000000 00111
Q ss_pred cCCcc---cccc--cccc--ceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEEc
Q 008915 187 EGKGE---IWVE--DILN--LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDA 256 (549)
Q Consensus 187 ~~~~~---l~~~--~~l~--~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~A 256 (549)
..+.. +... ...+ +.+++..|.+.|.+++.+ .|++++.+++++++..+++++ .|++++|++++|++||+|
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 81 HDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred cCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 11110 0000 1112 357888999999999865 478999999999999877764 577778889999999999
Q ss_pred cCCChHHHHHh-cCCC---CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 257 MGNFSPVVKQI-RSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 257 DG~~S~vrrql-~~~~---~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
||.+|.+|+++ +.+. ++...+.. +.....-.......+++. ...+++| .||..++ ...+.+.
T Consensus 161 DG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~p~~~~---~~~~~~~ 226 (388)
T PRK07045 161 DGARSMIRDDVLRMPAERVPYATPMAF-GTIALTDSVRECNRLYVD---------SNQGLAY-FYPIGDQ---ATRLVVS 226 (388)
T ss_pred CCCChHHHHHhhCCCcccCCCCcceeE-EEEeccCCccccceEEEc---------CCCceEE-EEEcCCC---cEEEEEE
Confidence 99999999975 3332 12222221 221110000011111111 1245666 6887654 2333333
Q ss_pred ccCCCCC---c-ccHHHHHHHHHHhC-cccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 333 YIDPQAG---S-PKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 333 ~~~~~~~---~-~~L~~l~~~~~~~l-p~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
....... . ...+++.+.+.+.+ +..... ++.... ...+..+|.......++..+|++|||||||.++|++|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG 304 (388)
T PRK07045 227 FPADEMQGYLADTTRTKLLARLNEFVGDESADA-MAAIGA-GTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQG 304 (388)
T ss_pred eccccchhccCCCCHHHHHHHHhhhcCccchHH-HhccCc-ccccceeecCccccccccCCCEEEEEccccccCCCcccc
Confidence 2221110 0 11222222222222 111111 111110 111223444433345677899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|.+++|+..|++.|..++..+. ..-+.|+.|++.+....... +.+++.. ...+.+.......++.
T Consensus 305 ~n~ai~Da~~La~~L~~~~~~~~---~~~~~L~~Ye~~R~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~ 370 (388)
T PRK07045 305 MNLAIEDAGELGACLDLHLSGQI---ALADALERFERIRRPVNEAV-------ISYGHAL----ATTYHDRAALVANFRS 370 (388)
T ss_pred HHHHHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHhhhHHHHH-------HhhhHHH----hhhcccchhHHHHHHh
Confidence 99999999999999987764321 22346789996544322111 1222222 3456677777777665
Q ss_pred cChh
Q 008915 488 VGIP 491 (549)
Q Consensus 488 ~g~~ 491 (549)
....
T Consensus 371 ~~~~ 374 (388)
T PRK07045 371 QLQT 374 (388)
T ss_pred hhhc
Confidence 5443
No 26
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=7.7e-28 Score=263.70 Aligned_cols=309 Identities=19% Similarity=0.212 Sum_probs=195.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhh--ccC--CCc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT--KFN--PNR 183 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~--~~~--~~~ 183 (549)
+|||+||||| +|+++|+.|+++|++|+||||++.+.. .+...+++.+++.|+++|++++..-...... .+. ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 5899999965 699999999999999999999987643 4667899999999999999753210000000 010 001
Q ss_pred ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc--CC-cEEEcCEEEEccCCC
Q 008915 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMGNF 260 (549)
Q Consensus 184 i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--dG-~~i~ArlVI~ADG~~ 260 (549)
+.|. ....+....+.+++..+++.|.+++.+.|++++.+++++++..++++++|++. +| ++++||+||+|||.+
T Consensus 82 ~~~~---~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 82 LDFS---ALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred CCcc---cCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 1111 01111223456889999999999998889999999999999999999888775 45 479999999999999
Q ss_pred hHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCC
Q 008915 261 SPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337 (549)
Q Consensus 261 S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~ 337 (549)
|.+|+++++..+ +...+..........+....... +. ..+.+| .+|..++ ...+.+...+..
T Consensus 159 S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~g~~~-~~P~~~~---~~~~~~~~~~~~ 223 (493)
T PRK08244 159 SIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSL------CT-----REGGVM-IVPLSGG---IYRVLIIDPERP 223 (493)
T ss_pred hHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEE------Ee-----CCceEE-EEECCCC---eEEEEEEcCCcc
Confidence 999999976532 11222111111111111111111 11 124455 6888765 233333221111
Q ss_pred --C-C-cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHH
Q 008915 338 --A-G-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR 413 (549)
Q Consensus 338 --~-~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lr 413 (549)
. . ..+.+++.+.+.+.++..-. .....+. ..++.......++..+||+|+|||||.++|++|||+|++++
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~----~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~ 297 (493)
T PRK08244 224 QVPKDEPVTLEELKTSLIRICGTDFG--LNDPVWM----SRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQ 297 (493)
T ss_pred cccCCCCCCHHHHHHHHHHhhCCCCC--cCCeeEE----EecccceeeHhhhccCcEEEeecceeccCCccccccccchh
Confidence 1 1 12455555555444432111 1111111 12333333344677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 414 d~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
|+..|+..|..+++. . + ....|+.|++.+
T Consensus 298 DA~~La~~La~~l~g-~-~--~~~lL~~Ye~eR 326 (493)
T PRK08244 298 DAMNLGWKLAAAIKG-W-A--PDWLLDSYHAER 326 (493)
T ss_pred hHHHHHHHHHHHHcC-C-C--CchhhhhhHHHH
Confidence 999999999988853 2 1 224578999543
No 27
>PRK10015 oxidoreductase; Provisional
Probab=99.96 E-value=7.1e-28 Score=259.37 Aligned_cols=321 Identities=17% Similarity=0.180 Sum_probs=195.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--C
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F--N 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r--~~~IS~~~l~~L~~lGl~~~~eie~~i~~~---~--~ 180 (549)
.+||||||||| +|+++|+.||++|++|+||||.++++.+. ...++...++.+.. ++.....++..+..+ + .
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence 46999999965 69999999999999999999999887542 12344444443321 332211222222111 0 0
Q ss_pred C--CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 181 ~--~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
. ..+.|... ....+..-++.++|..|+++|.+++++.|++++.+++|+++..+++++.....++.+++|++||+|||
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHRE-QPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccC-CCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 0 11112111 11111122578999999999999999999999999999999887777653333556899999999999
Q ss_pred CChHHHHHhcCCCC--CCceeeEEeEeeeccCCCceeeee----------ecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDNSTSDVI----------YSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 259 ~~S~vrrql~~~~~--~~~~~~~vg~~~~g~~~~~~~ei~----------~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
.+|.++++++.... +......+.... ..+.....+.+ ...+... ++..++.| .||..+. .
T Consensus 162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~-~~~~~~i~~~~~~~~~~g~~w~~~g~~~---~g~~g~G~-~~~~~d~---v 233 (429)
T PRK10015 162 VNSMLGRSLGMVPASDPHHYAVGVKEVI-GLTPEQINDRFNITGEEGAAWLFAGSPS---DGLMGGGF-LYTNKDS---I 233 (429)
T ss_pred cchhhhcccCCCcCCCcCeEEEEEEEEE-eCCHHHhhHhhcCCCCCCeEEEecCccC---CCCCCceE-EEEcCCc---E
Confidence 99999998876432 222222221111 12111000000 0000000 00112333 4454432 3
Q ss_pred eEEEEEcc-CCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCC--
Q 008915 327 TTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSP-- 402 (549)
Q Consensus 327 ~~~l~~~~-~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~P-- 402 (549)
...+.... +......++.+++++|. ..|.++.. +...+......+.+|.... ...+.+.+|+++|||||+++||
T Consensus 234 ~vGv~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~ 311 (429)
T PRK10015 234 SLGLVCGLGDIAHAQKSVPQMLEDFK-QHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLG 311 (429)
T ss_pred EEEEEEehhhhccCCCCHHHHHHHHh-hChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccC
Confidence 33332221 11112347788888874 56655443 2333334444456776532 2236788999999999999995
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
++++|++.++.+...+|+.+.+|++.++++...| +.|++
T Consensus 312 ~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l---~~Y~~ 350 (429)
T PRK10015 312 FTVRGMDLAIASAQAAATTVIAAKERADFSASSL---AQYKR 350 (429)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCccccH---HHHHH
Confidence 5999999999999999999999999887776665 68885
No 28
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=254.08 Aligned_cols=344 Identities=19% Similarity=0.161 Sum_probs=206.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC------CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
.|||+||||| +|+++|+.|++.|++|+|+||.+.+.. .+...+++.+++.|..+|++++. +..... ...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~--~~~~~~--~~~ 80 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQAL--DAARLA--PVY 80 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhh--hhhcCC--cce
Confidence 6899999976 599999999999999999999987643 13346889999999999998642 110000 001
Q ss_pred cccccCC--ccccc------cccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 183 RCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 183 ~i~f~~~--~~l~~------~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
.+.+.+. ..+.. .....+.+++..|++.|.+++++.| ++++ +++++++..+++++.|++++|.+++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 81 DMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLV 159 (388)
T ss_pred EEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEE
Confidence 1111110 00110 0112456889999999999998887 7888 99999998888899999888888999999
Q ss_pred EEccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 254 IDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
|+|||.+|.+++.++..... .+.+.++..... ...... ...+ +. ..+++| .+|..++ .....
T Consensus 160 I~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~----~~-----~~~~~~-~~p~~~~---~~~~~ 224 (388)
T PRK07608 160 VGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAE-RPHRGT-AYQW----FR-----DDGILA-LLPLPDG---HVSMV 224 (388)
T ss_pred EEeCCCCchHHHhcCCCccccccCCEEEEEEEEec-CCCCCE-EEEE----ec-----CCCCEE-EeECCCC---CeEEE
Confidence 99999999999998765322 222222111100 000000 0000 01 124555 6788765 23222
Q ss_pred EEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 331 ~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+........ ..+.+++.+.+....+.. +..+....... .+|........+..+|+++||||||.++|++|||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG 299 (388)
T PRK07608 225 WSARTAHADELLALSPEALAARVERASGGR----LGRLECVTPAA-GFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQG 299 (388)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHHHHh----cCCceecCCcc-eeecchhhhhhhhcCceEEEeccccccCCccccc
Confidence 332110000 011122222222222110 11122111111 2454433445677899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|.+++|+..|++.|..+...++. ...+.|+.|++...+....+. .+++. +..++.++..+...+|+
T Consensus 300 ~n~ai~da~~La~~L~~~~~~~~~--~~~~~l~~Ye~~R~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~r~ 366 (388)
T PRK07608 300 MNLGLRDVAALADVLAGREPFRDL--GDLRLLRRYERARREDILALQ-------VATDG----LQRLFALPGPLARWLRN 366 (388)
T ss_pred cchhHHHHHHHHHHHHHhhccCCC--ccHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHHHcCCchHHHHHHH
Confidence 999999999999998776432222 223567899964432222211 12221 23466677666666676
Q ss_pred cChh
Q 008915 488 VGIP 491 (549)
Q Consensus 488 ~g~~ 491 (549)
..+.
T Consensus 367 ~~~~ 370 (388)
T PRK07608 367 AGMA 370 (388)
T ss_pred HHHH
Confidence 6554
No 29
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=5.5e-27 Score=237.83 Aligned_cols=286 Identities=21% Similarity=0.222 Sum_probs=185.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
|||+||||| +|+++|+.|+++|++|+||||...++.. ....+++..++.|...+.. ... ..+...+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-----~~~~~~~~~~~ 72 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL---IVN-----LVRGARFFSPN 72 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh---hhh-----heeeEEEEcCC
Confidence 799999976 5999999999999999999999876542 3345666665555333211 010 01100110010
Q ss_pred Ccc--ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-CcEEEcCEEEEccCCChHHHH
Q 008915 189 KGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 189 ~~~--l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-G~~i~ArlVI~ADG~~S~vrr 265 (549)
+.. ...+....+.+++..|.+.|.+++.+.|++++.+++++++..+++++.+.+.+ +.+++||+||+|||.+|.+++
T Consensus 73 ~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~ 152 (295)
T TIGR02032 73 GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAK 152 (295)
T ss_pred CcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHH
Confidence 111 11112234568999999999999998999999999999999988888877654 458999999999999999999
Q ss_pred HhcCCCCCCceeeEEeEeeecc--C-CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCccc
Q 008915 266 QIRSGRKPDGVCLVVGSCARGF--K-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK 342 (549)
Q Consensus 266 ql~~~~~~~~~~~~vg~~~~g~--~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~ 342 (549)
+++....+...+.......... + ..+...++..... . ..++.| .+|..++ .....+..... ....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~-~~P~~~~---~~~v~~~~~~~-~~~~~ 221 (295)
T TIGR02032 153 KLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGI-S-----PGGYGW-VFPKGDG---TANVGVGSRSA-EEGED 221 (295)
T ss_pred hcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCc-C-----CCceEE-EEeCCCC---eEEEeeeeccC-CCCCC
Confidence 8876543333332221111110 0 1122233322211 1 246788 7998765 22222222221 12347
Q ss_pred HHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 008915 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 421 (549)
Q Consensus 343 L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~ 421 (549)
+++.+++|....|.+. +.++.+...+.+|... ...+...+|++++|||||++||++|+|++++++|+..+++.
T Consensus 222 ~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~-~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 222 LKKYLKDFLARRPELK-----DAETVEVIGAPIPIGR-PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEV 294 (295)
T ss_pred HHHHHHHHHHhCcccc-----cCcEEeeeceeeccCC-CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhh
Confidence 8899999998887643 3333333334455532 34467889999999999999999999999999998887765
No 30
>PLN02697 lycopene epsilon cyclase
Probab=99.96 E-value=3e-26 Score=250.77 Aligned_cols=292 Identities=16% Similarity=0.178 Sum_probs=184.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..||||||||| +|+++|+.|+++|++|+|||+..... ..|.++.. .+.++|+. ..+...+....+.+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~--~n~GvW~~---~l~~lgl~------~~i~~~w~~~~v~~~ 175 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWED---EFKDLGLE------DCIEHVWRDTIVYLD 175 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC--Cccccchh---HHHhcCcH------HHHHhhcCCcEEEec
Confidence 36999999965 69999999999999999999864322 23455543 35566652 223333333333333
Q ss_pred CCccccccccccc-eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEE-EEcCCcEEEcCEEEEccCCChHHHH
Q 008915 188 GKGEIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 188 ~~~~l~~~~~l~~-~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-~~~dG~~i~ArlVI~ADG~~S~vrr 265 (549)
....+.... .+ .|++..|++.|.+++.+.|+++ .+++|+++..+++++.+ .+.+|.+++|++||+|||.+|...-
T Consensus 176 ~~~~~~~~~--~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~ 252 (529)
T PLN02697 176 DDKPIMIGR--AYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLL 252 (529)
T ss_pred CCceeeccC--cccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhh
Confidence 222222211 23 4899999999999998889987 67899999887777654 4567889999999999999994211
Q ss_pred HhcCC-C-CCCceeeEEeEeee--ccC-CCceeeeeecCCcc--c---ccCCCCceeEEEEecCCCCCccceEEE-EEcc
Q 008915 266 QIRSG-R-KPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSV--K---KVGDSEVQLFWEAFPAGSGPLDRTTYM-FTYI 334 (549)
Q Consensus 266 ql~~~-~-~~~~~~~~vg~~~~--g~~-~~~~~ei~~~~~~~--~---~~~~~~~~~~W~~fP~~~g~~~~~~~l-~~~~ 334 (549)
+.... . ...+.+ .|...+ ..+ +.+. .++.++... . ........++| ++|.+++ ..++ .++.
T Consensus 253 ~~~~~~~~~~~Q~a--~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlY-vlP~~~~----~~~VE~T~l 324 (529)
T PLN02697 253 QYEVGGPRVCVQTA--YGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLY-AMPMSST----RVFFEETCL 324 (529)
T ss_pred ccccCCCCcccEEE--EEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEE-EeecCCC----eEEEEEeee
Confidence 11111 1 111222 222221 111 2222 233332211 0 01112356888 8999865 2222 2221
Q ss_pred -CCC-CCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHH
Q 008915 335 -DPQ-AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT 412 (549)
Q Consensus 335 -~~~-~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~l 412 (549)
... .....+++.+.+|++..+ + ...++.+.+.|.+|..... +...+++++|||||+++||.||.||..++
T Consensus 325 ~~~~~l~~~~l~~~L~~~l~~~G-i-----~~~~i~~~E~g~iPm~g~~--~~~~~~vl~vG~AAG~vhPsTGy~v~~~l 396 (529)
T PLN02697 325 ASKDAMPFDLLKKRLMSRLETMG-I-----RILKTYEEEWSYIPVGGSL--PNTEQKNLAFGAAASMVHPATGYSVVRSL 396 (529)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-C-----CcceEEEEEeeeecCCCCC--cccCCCeeEeehhhcCCCCchhhhHHHHH
Confidence 111 112356666666766542 2 2334566778999996432 22378999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 008915 413 RHLGRLSTGVYEAVRGDF 430 (549)
Q Consensus 413 rd~~~La~~i~~Al~~g~ 430 (549)
+.+..+|+.|.++++.++
T Consensus 397 ~~A~~~A~~ia~~l~~~~ 414 (529)
T PLN02697 397 SEAPKYASVIARILKNVS 414 (529)
T ss_pred HhHHHHHHHHHHHhhCCc
Confidence 999999999999998775
No 31
>PRK07190 hypothetical protein; Provisional
Probab=99.96 E-value=9.8e-27 Score=254.10 Aligned_cols=310 Identities=15% Similarity=0.136 Sum_probs=196.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNPNR 183 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~~~~~~~ 183 (549)
..+||+||||| +|+++|+.|+++|++|+||||.+.+.. .++..+++.+++.|+.+|++++..-..... ..+..+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 36999999965 699999999999999999999986643 355568899999999999875321000000 0011111
Q ss_pred -ccccC--Ccccc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 184 -CGFEG--KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 184 -i~f~~--~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+.... ...+. ......+.+.+..+++.|.+++.+.|++++.+++|+++.++++++++.+.+|++++||+||+|||.
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCC
Confidence 10000 00000 011112457788899999999999999999999999999999999888878889999999999999
Q ss_pred ChHHHHHhcCCCCCC---ceeeEEeE-eeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccC
Q 008915 260 FSPVVKQIRSGRKPD---GVCLVVGS-CARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (549)
Q Consensus 260 ~S~vrrql~~~~~~~---~~~~~vg~-~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~ 335 (549)
+|.+|++++++.+.. .....+-. ....+++... .+.+. . + ...++| +|..++ ...++....
T Consensus 164 ~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~-~~~~~-~---~----~g~~~~--~p~~~~---~~r~~~~~~- 228 (487)
T PRK07190 164 RSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPE-IIVFQ-A---E----TSDVAW--IPREGE---IDRFYVRMD- 228 (487)
T ss_pred CHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcc-eEEEE-c---C----CCCEEE--EECCCC---EEEEEEEcC-
Confidence 999999998764321 11111111 1111221000 01110 0 1 234555 566543 222222221
Q ss_pred CCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCcc-CCcEEEeCCCCCCCCCCCCCchhhHHHH
Q 008915 336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRH 414 (549)
Q Consensus 336 ~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~-~~rvlLVGDAA~~v~Pltg~G~g~~lrd 414 (549)
......+++.+...+.+... ...+.+..+. ..+|.......++. .+||+|+|||||.++|..|||+|.+++|
T Consensus 229 --~~~~t~~~~~~~l~~~~~~~-~~~~~~~~w~----s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqD 301 (487)
T PRK07190 229 --TKDFTLEQAIAKINHAMQPH-RLGFKEIVWF----SQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLAD 301 (487)
T ss_pred --CCCCCHHHHHHHHHHhcCCC-CCceEEEEEE----EEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHH
Confidence 11224455555444433111 1112222221 34566555566775 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 415 ~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
+..|+..|...++.. + ....|..|+.
T Consensus 302 A~nL~wkLa~v~~g~--a--~~~lLdtY~~ 327 (487)
T PRK07190 302 AFNLIWKLNMVIHHG--A--SPELLQSYEA 327 (487)
T ss_pred HHHHHHHHHHHHcCC--C--cHHHHHHHHH
Confidence 999999998877643 2 2355789994
No 32
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=1.7e-26 Score=245.32 Aligned_cols=349 Identities=16% Similarity=0.166 Sum_probs=203.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhC---CCcEEEEccCCCCC------CCccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKG------REQEWNISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~---GlrVlLIEr~~~~~------~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
.|||+||||| +|+++|+.|+++ |++|+|+||..... ..+...+++..+..|+++|+++...-........
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 6999999965 699999999998 99999999963221 1245678888999999999986421111000000
Q ss_pred ---CCCc---ccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 180 ---NPNR---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 180 ---~~~~---i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
.... ..+.. ..... ...++.+++..|++.|.+.+.+. |++++.+++++++..+++++.|++++|.+++|++
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDA-EDYGV-PALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeeh-hhcCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 0000 11110 01111 12246688889999999988764 6899999999999888889999988888899999
Q ss_pred EEEccCCChHHHHHhcCCCCCC---ceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~~~---~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|.++++++...... ..+.. ..+.. ........+.. +. ..+.++ .+|.+++ ...+
T Consensus 161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~---~~-----~~g~~~-~~p~~~g---~~~~ 225 (395)
T PRK05732 161 LVAADGSHSALREALGIDWQQHPYEQVAVI-ANVTT--SEAHQGRAFER---FT-----EHGPLA-LLPMSDG---RCSL 225 (395)
T ss_pred EEEecCCChhhHHhhCCCccceecCCEEEE-EEEEe--cCCCCCEEEEe---ec-----CCCCEE-EeECCCC---CeEE
Confidence 9999999999999987653221 12211 11110 00000111100 00 012333 5777665 2322
Q ss_pred EEEccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 330 l~~~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+....... ...+.++..+.+...++. . +..+..... ...+|.......++..+|++|+|||||.++|++||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~-~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~Gq 300 (395)
T PRK05732 226 VWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R---LGRITHAGK-RSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQ 300 (395)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h---hcceeecCC-cceecccccchhhhccCcEEEEeecccccCCcccc
Confidence 222211000 001122222222222111 0 011100000 11234433334456789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|.+++|+..|++.|..+++.+. +....+.|+.|++...... + ..+.+++.+ ..++.++......+|
T Consensus 301 G~~~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~Y~~~R~~~~----~---~~~~~~~~~----~~~~~~~~~~~~~~r 368 (395)
T PRK05732 301 GFNLGLRDVMSLAETLTQALARGE-DIGDYAVLQRYQQRRQQDR----E---ATIGFTDGL----VRLFANRWAPLVVGR 368 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHH----H---HHHHHHHHH----HHHHcCCChHHHHHH
Confidence 999999999999999988876532 1122245789995443222 1 112222222 345667766666666
Q ss_pred hcChhh
Q 008915 487 QVGIPV 492 (549)
Q Consensus 487 ~~g~~~ 492 (549)
...+..
T Consensus 369 ~~~~~~ 374 (395)
T PRK05732 369 NLGLMA 374 (395)
T ss_pred HHHHHH
Confidence 665543
No 33
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.96 E-value=1e-26 Score=257.54 Aligned_cols=310 Identities=17% Similarity=0.137 Sum_probs=186.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.++||+||||| .|+++|+.|+++|++|+||||.+.+. ..+.+.+++.+++.|+++|++++. ... ......+.|
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l--~~~---~~~~~~~~~ 83 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEV--LPH---TTPNHGMRF 83 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHH--Hhh---cccCCceEE
Confidence 36999999965 59999999999999999999998654 346778999999999999997531 111 010001111
Q ss_pred c--CCccc-ccc--------ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc--CC--cEEEc
Q 008915 187 E--GKGEI-WVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSS 250 (549)
Q Consensus 187 ~--~~~~l-~~~--------~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--dG--~~i~A 250 (549)
. .+..+ ..+ ....+.+++..+.+.|.+.+.+. |++++.+++|+++++++++++|+++ +| ++++|
T Consensus 84 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~a 163 (538)
T PRK06183 84 LDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRA 163 (538)
T ss_pred EcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEE
Confidence 1 01000 000 01124577888999999998775 8899999999999999999998886 46 47999
Q ss_pred CEEEEccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCC-CceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~-~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
|+||+|||.+|.+|+++++.... .....++......... ......++ .+ +..++ .+|..++ .
T Consensus 164 d~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~--~~p~~~~---~ 229 (538)
T PRK06183 164 RYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYC-----DP----ARPYT--SVRLPHG---R 229 (538)
T ss_pred EEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEE-----CC----CCCEE--EEEcCCC---e
Confidence 99999999999999999764321 1111111110000000 00000100 00 12222 3555443 2
Q ss_pred eEEEEEccCC-CCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 008915 327 TTYMFTYIDP-QAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (549)
Q Consensus 327 ~~~l~~~~~~-~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg 405 (549)
..+.+..... ......-.+.+.+++..... .....++.+.. .+........++..+||+|+|||||.++|+.|
T Consensus 230 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~--~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~G 303 (538)
T PRK06183 230 RRWEFMLLPGETEEQLASPENVWRLLAPWGP----TPDDAELIRHA--VYTFHARVADRWRSGRVLLAGDAAHLMPPFAG 303 (538)
T ss_pred EEEEEEeCCCCChhhcCCHHHHHHHHHhhCC----CCcceEEEEEE--eeeEccEEhhhhccCCEEEEechhhcCCCccc
Confidence 2233332211 11111111222233322210 01122222211 12221122346778999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 406 ~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
||+|++++|+..|+..|...++... .-..|..|++.+.
T Consensus 304 QG~n~gi~DA~~La~kLa~~~~g~~----~~~~L~~Ye~eR~ 341 (538)
T PRK06183 304 QGMNSGIRDAANLAWKLAAVLRGRA----GDALLDTYEQERR 341 (538)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHH
Confidence 9999999999999998886664321 2345789995443
No 34
>PRK06184 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-26 Score=254.80 Aligned_cols=313 Identities=15% Similarity=0.118 Sum_probs=187.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhh---hccCC-Cc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNP-NR 183 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~~~~~-~~ 183 (549)
++||+||||| +|+++|+.|+++|++|+||||++.+.. .+...|++.+++.|+++|++++..-..... ..+.. ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 5899999965 699999999999999999999986643 356678999999999999975311000000 00110 10
Q ss_pred c---cccCC-c-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE---cCCcEEEcCEEEE
Q 008915 184 C---GFEGK-G-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIID 255 (549)
Q Consensus 184 i---~f~~~-~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~---~dG~~i~ArlVI~ 255 (549)
+ .+... . ....+....+.+++..+++.|.+++.+.|++++.++++++++++++++++++ .++++++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence 0 00000 0 0011112235678889999999999988999999999999999999988877 4566899999999
Q ss_pred ccCCChHHHHHhcCCCCC---Cc-eeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 256 AMGNFSPVVKQIRSGRKP---DG-VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 256 ADG~~S~vrrql~~~~~~---~~-~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
|||.+|.+|+++++.... .. .+.++.......+. .....+.. . ..+.+ ..+|..++ ....+.+
T Consensus 163 ADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~-~~~~~-~~~p~~~~--~~~~~~~ 229 (502)
T PRK06184 163 ADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDR-DAWHQWPD--------G-DMGMI-ALCPLPGT--DLFQIQA 229 (502)
T ss_pred CCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCC-cceEEccC--------C-CCcEE-EEEEccCC--CeEEEEE
Confidence 999999999999865431 11 22211111111110 11111110 0 11222 24565433 1222222
Q ss_pred EccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 332 ~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
............+++.+.+....+.. ...+....+ ...++.....+.++..+||+|+|||||.++|+.|||+|.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~----~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~g 304 (502)
T PRK06184 230 PLPPGGEPDLSADGLTALLAERTGRT-DIRLHSVTW----ASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTS 304 (502)
T ss_pred EcCCCccCCCCHHHHHHHHHHhcCCC-Ccceeeeee----eeccccceeEhhhhcCCcEEEeccccccCCCcccccccch
Confidence 22211111112222222222222211 111111111 1122322223346778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
++|+..|+..|...++. . . ...|..|++.
T Consensus 305 i~DA~~LawkLa~vl~g-~-~---~~lL~~Ye~e 333 (502)
T PRK06184 305 VQDAYNLGWKLAAVLAG-A-P---EALLDTYEEE 333 (502)
T ss_pred HHHHHHHHHHHHHHHcC-C-C---HHHHHHHHHH
Confidence 99999999998887764 2 1 2357899943
No 35
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=6.3e-27 Score=252.03 Aligned_cols=320 Identities=15% Similarity=0.192 Sum_probs=191.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--C
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F--N 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r--~~~IS~~~l~~L~~lGl~~~~eie~~i~~~---~--~ 180 (549)
++||||||||| +|+++|+.||++|++|+||||..+++.+. ...++...++.+.. .++....++..+..+ + .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEcC
Confidence 47999999965 69999999999999999999999887542 12344444433311 111111122221111 0 0
Q ss_pred CCcc--cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 181 PNRC--GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 181 ~~~i--~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
...+ .+... ....+....+.++|..|+++|.+++.+.|++++++++|+++..+++.+++...+|.+++|++||+|||
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 83 KSAMTMDYCNG-DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADG 161 (428)
T ss_pred CCceeeccccc-cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeC
Confidence 0111 11111 01111223577899999999999999999999999999999887777654445677899999999999
Q ss_pred CChHHHHHhcCCCC--CCceeeEEeEeeec----cC------CCc-eeeeeecCCcccccCCCCceeEEEEecCCCCCcc
Q 008915 259 NFSPVVKQIRSGRK--PDGVCLVVGSCARG----FK------DNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD 325 (549)
Q Consensus 259 ~~S~vrrql~~~~~--~~~~~~~vg~~~~g----~~------~~~-~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~ 325 (549)
.+|.++++++...+ +..++..+....+. .+ +.. ...++... +.. + -.++.| .|+..+.
T Consensus 162 ~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~---g-~~ggG~-~~~~~~~--- 232 (428)
T PRK10157 162 VNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGS-PTD---G-LMGGGF-LYTNENT--- 232 (428)
T ss_pred CCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEEC-CCC---C-CcCcee-EEEcCCe---
Confidence 99999999876532 33333222111110 00 000 01111110 100 0 112234 4565432
Q ss_pred ceEEEEE-ccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCCC
Q 008915 326 RTTYMFT-YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPV 403 (549)
Q Consensus 326 ~~~~l~~-~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~Pl 403 (549)
....+.. .........+..++++.| ..+|.++.. +...+........+|.... ...+.+.+++++|||||+++||+
T Consensus 233 ~svG~~~~~~~~~~~~~~~~~~l~~~-~~~p~v~~~-~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~ 310 (428)
T PRK10157 233 LSLGLVCGLHHLHDAKKSVPQMLEDF-KQHPAVAPL-IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNL 310 (428)
T ss_pred EEEEEEEehHHhcccCCCHHHHHHHH-HhCchHHHH-hCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccccc
Confidence 3333322 222112234667777765 456655432 2222221122234554322 22356789999999999999995
Q ss_pred --CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 404 --SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 404 --tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
+|.|++.++.....+|+.+.++++.++.++..| +.|++
T Consensus 311 g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l---~~Y~~ 350 (428)
T PRK10157 311 GFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKL---AEYRQ 350 (428)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhH---HHHHH
Confidence 899999999999999999999999887766555 68885
No 36
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.95 E-value=3.9e-26 Score=243.06 Aligned_cols=313 Identities=17% Similarity=0.182 Sum_probs=181.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC---CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~---~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
++||+||||| +|+++|+.|+++|++|+|+||.+.+ ...+...++++.++.|+++|++++. ... ........+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l--~~~-~~~~~~~~~~ 78 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERM--DRE-GLVHDGIELR 78 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHH--Hhc-CCccCcEEEE
Confidence 5899999965 5999999999999999999999853 2223445889999999999997542 111 0000111111
Q ss_pred ccCC-ccccccc----cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-ECCEEEEEEc-CCc--EEEcCEEEEc
Q 008915 186 FEGK-GEIWVED----ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA 256 (549)
Q Consensus 186 f~~~-~~l~~~~----~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-dG~--~i~ArlVI~A 256 (549)
+.+. ..+..+. .....+.+..+.+.|.+++.+.|++++.+++++++.. +++++.|++. +|+ +++||+||+|
T Consensus 79 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgA 158 (392)
T PRK08243 79 FDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGC 158 (392)
T ss_pred ECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEEC
Confidence 1110 0011100 0112346677888888888888999999999999976 6677777773 664 7999999999
Q ss_pred cCCChHHHHHhcCCCCCC--ceee--EEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 257 MGNFSPVVKQIRSGRKPD--GVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 257 DG~~S~vrrql~~~~~~~--~~~~--~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
||.+|.+|++++...... .... ..+.... .+ ....++++. . .+.++.| .+|.+.+ ...+++.
T Consensus 159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~-----~~~~~~~-~~~~~~~---~~~~~~~ 224 (392)
T PRK08243 159 DGFHGVSRASIPAGALRTFERVYPFGWLGILAE-AP-PVSDELIYA---N-----HERGFAL-CSMRSPT---RSRYYLQ 224 (392)
T ss_pred CCCCCchhhhcCcchhhceecccCceEEEEeCC-CC-CCCCceEEe---e-----CCCceEE-EecCCCC---cEEEEEE
Confidence 999999999986532111 1000 0001000 00 000111111 0 1234555 3444332 2222222
Q ss_pred ccC-CCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 333 YID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 333 ~~~-~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
+.. ........++..+.+...++......+....... ...+|.......++..+|++|||||||.++|++|||+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~a 302 (392)
T PRK08243 225 CPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIE--KSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (392)
T ss_pred ecCCCCcccCChhHHHHHHHHhcCcccccccccCcccc--ccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHH
Confidence 211 1111112222333333333321100000000010 1123333233346677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
++|+..|++.|..+++.+. .+.|+.|++..
T Consensus 303 i~Da~~La~~L~~~~~~~~-----~~~L~~Ye~~r 332 (392)
T PRK08243 303 ASDVRYLARALVEFYREGD-----TALLDAYSATA 332 (392)
T ss_pred HHHHHHHHHHHHHHhccCC-----HHHHHHHHHHH
Confidence 9999999999988876531 24578999543
No 37
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=6.4e-26 Score=238.09 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=177.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC----C-CccccCCHHHHHHHHHcCCCCccc-chhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG----R-EQEWNISRKELLELVESGILVEDD-IDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~----~-~r~~~IS~~~l~~L~~lGl~~~~e-ie~~i~~~~~~~ 182 (549)
.|||+||||| +|+++|+.|+++ ++|+|+||++.+. . .....|+++.++.|.++|++.... +.... .+...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~--~~~~~ 77 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ--IFAVK 77 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc--cceee
Confidence 3899999965 699999999999 9999999987532 1 234579999999999999874321 11100 01001
Q ss_pred cccccCCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccC
Q 008915 183 RCGFEGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMG 258 (549)
Q Consensus 183 ~i~f~~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG 258 (549)
.+.+.. .+... ....+.++|..|+++|.+.+ +.|++++.+++++++..+++++.|++ ++|+ +++|++||+|||
T Consensus 78 ~~~~~~--~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG 154 (351)
T PRK11445 78 TIDLAN--SLTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG 154 (351)
T ss_pred Eecccc--cchhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence 111111 11000 01124699999999999854 67899999999999998889988876 4564 799999999999
Q ss_pred CChHHHHHhcCCCCCCceeeEEeEeeeccCC--C-ceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccC
Q 008915 259 NFSPVVKQIRSGRKPDGVCLVVGSCARGFKD--N-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (549)
Q Consensus 259 ~~S~vrrql~~~~~~~~~~~~vg~~~~g~~~--~-~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~ 335 (549)
.+|.+|++++........ ++. .+-+.. . ....+++... . ..+|.| .||..+. ......+.
T Consensus 155 ~~S~vr~~l~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~f~~~-~------~~~~~W-~~p~~~~----~~~g~~~~- 217 (351)
T PRK11445 155 ANSMVRRHLYPDHQIRKY---VAI-QQWFAEKHPVPFYSCIFDNE-I------TDCYSW-SISKDGY----FIFGGAYP- 217 (351)
T ss_pred CCcHHhHHhcCCCchhhE---EEE-EEEecCCCCCCCcceEEecc-C------CCceEE-EeCCCCc----EEeccccc-
Confidence 999999998754322111 111 111111 1 1111222111 1 247899 7998643 22211121
Q ss_pred CCCCcccHHHHHH---HHHHhCcccccccCCceeEeeeeeeeeccccCCCC-CccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 336 PQAGSPKLEELLE---RYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 336 ~~~~~~~L~~l~~---~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~-~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
.. +..+.++ +++..++. ...+. .+...+.++....... ....+|+++||||||++||++|+|++.+
T Consensus 218 -~~---~~~~~~~~l~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~a 287 (351)
T PRK11445 218 -MK---DGRERFETLKEKLSAFGF----QFGKP--VKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYA 287 (351)
T ss_pred -cc---chHHHHHHHHHHHHhccc----ccccc--cccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHH
Confidence 11 1122222 23222211 01110 1111122222111111 2245899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
++++..+++.|.++. .. .++.|++..
T Consensus 288 l~sa~~la~~l~~~~------~~---~~~~y~~~~ 313 (351)
T PRK11445 288 LDSARILSEVLNKQP------EK---LNTAYWRKT 313 (351)
T ss_pred HHhHHHHHHHHHhcc------cc---hHHHHHHHH
Confidence 999999998886653 12 247899543
No 38
>PRK06753 hypothetical protein; Provisional
Probab=99.95 E-value=6.1e-26 Score=239.48 Aligned_cols=305 Identities=19% Similarity=0.173 Sum_probs=181.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~- 188 (549)
||+||||| +|+++|+.|+++|++|+|+||.+.+... +.+.|+++.+..|..+|+++. +... ......+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~--~~~~---~~~~~~~~~~~~ 76 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG--IKNA---GQILSTMNLLDD 76 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH--HHhc---CCcccceeEEcC
Confidence 79999976 5999999999999999999999876533 456789999999999998743 1110 00001111110
Q ss_pred -Ccc---ccc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 189 -KGE---IWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 189 -~~~---l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+.. +.. ....++.+++..|.+.|.+.+. ..+++.+++|++++.+++++.|++++|+++++++||+|||.+|.+
T Consensus 77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 100 000 1123467899999999998865 358999999999998888999999889899999999999999999
Q ss_pred HHHhcCCCCCCc--eeeEEeEee-eccCC-CceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCC--C
Q 008915 264 VKQIRSGRKPDG--VCLVVGSCA-RGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP--Q 337 (549)
Q Consensus 264 rrql~~~~~~~~--~~~~vg~~~-~g~~~-~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~--~ 337 (549)
|++++...+... .....+... ...+. ....+. + . ..+.+| .+|..++ ...+.+..... .
T Consensus 155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-----~-----~~g~~~-~~p~~~~---~~~~~~~~~~~~~~ 219 (373)
T PRK06753 155 RQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEY-W-----G-----TKGRFG-IVPLLNN---QAYWFITINAKERD 219 (373)
T ss_pred HHHhCCCCCceEcceEEEEEEeccccccCccceEEE-E-----c-----CCCEEE-EEEcCCC---eEEEEEEeccccCC
Confidence 999875432211 110111111 01000 001111 1 0 134566 6787754 22222222111 1
Q ss_pred CC-cccHHHHHHHHHHh-CcccccccCCceeEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCCCchhhHHHH
Q 008915 338 AG-SPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414 (549)
Q Consensus 338 ~~-~~~L~~l~~~~~~~-lp~~~~~~l~~~~~~r~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd 414 (549)
+. ...-.+.+.+++.. .+.++.+ ++..... ..+ ..+.+... ..++..+|++|||||||.++|++|||.|++++|
T Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~D 296 (373)
T PRK06753 220 PKYSSFGKPHLQAYFNHYPNEVREI-LDKQSET-GIL-HHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMED 296 (373)
T ss_pred cccccccHHHHHHHHhcCChHHHHH-HHhCCcc-cce-eeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHH
Confidence 01 11111222222222 2222221 1111000 000 11222211 235677999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCccc
Q 008915 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPV 449 (549)
Q Consensus 415 ~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~ 449 (549)
+..|++.|.. .. .-+.|+.|++.....
T Consensus 297 a~~L~~~L~~----~~----~~~al~~Y~~~r~~~ 323 (373)
T PRK06753 297 AIVLANCLNA----YD----FEKALQRYDKIRVKH 323 (373)
T ss_pred HHHHHHHhhh----cc----HHHHHHHHHHHhhHH
Confidence 9988877742 11 124568999655433
No 39
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=3.7e-26 Score=243.93 Aligned_cols=314 Identities=14% Similarity=0.130 Sum_probs=182.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
-+|+||||| +|+++|+.|+++|++|.|+||.+..+. .+...|+++.++.|.++|++++. ... .+.+..+.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l--~~~---~~~~~~~~~~~ 77 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRL--SGT---GVTPKALYLMD 77 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHH--hhc---ccCcceEEEec
Confidence 369999976 599999999999999999999876543 35678999999999999998542 111 11111111111
Q ss_pred Cc--------c---cccc--ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc---CCcEEEcC
Q 008915 189 KG--------E---IWVE--DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSH 251 (549)
Q Consensus 189 ~~--------~---l~~~--~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---dG~~i~Ar 251 (549)
+. . .... ....+.+++..|.+.|.+++.+. +++++.+++|+++..++++++|++. ++++++||
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~ad 157 (400)
T PRK06475 78 GRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAA 157 (400)
T ss_pred CCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecC
Confidence 00 0 0000 00113589999999999998764 6899999999999988888888763 34589999
Q ss_pred EEEEccCCChHHHHHhcCCC-CCCceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 252 LIIDAMGNFSPVVKQIRSGR-KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 252 lVI~ADG~~S~vrrql~~~~-~~~~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
+||+|||.+|.+|++++... .+.......+.+. ..++. ...+.+..........+.+.. +. .+|..++. ...+
T Consensus 158 lvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~-~~p~~~~~--~~~~ 232 (400)
T PRK06475 158 YLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPA-SFLSAMPEHKAVSAWLGNKAH-FI-AYPVKGGK--FFNF 232 (400)
T ss_pred EEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcch-hhhhhcccCCceEEEEcCCCE-EE-EEEccCCc--EEEE
Confidence 99999999999999985432 1212211111111 11110 000000000000000011222 22 57776541 2222
Q ss_pred EEEccCCC-C---C-cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCc-cCCcEEEeCCCCCCCCCC
Q 008915 330 MFTYIDPQ-A---G-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPV 403 (549)
Q Consensus 330 l~~~~~~~-~---~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~-~~~rvlLVGDAA~~v~Pl 403 (549)
+....+.. . . ....+++.+.|-...|.+... ++... . ...+|++...+.++ ..+|++|||||||.++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-i~~~~---~-~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~ 307 (400)
T PRK06475 233 VAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQI-LAAID---E-WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPF 307 (400)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHH-HhcCC---c-eeECcCcccCCCcceecCCEEEEecccccCCch
Confidence 22111111 0 1 112222222221122222221 11111 1 12456665444444 458999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 404 tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
+|||.|++++|+..|++.|.. .++ ...|+.|++.+.
T Consensus 308 ~GqG~n~aieDa~~La~~L~~----~~~----~~aL~~Ye~~R~ 343 (400)
T PRK06475 308 AAQGAAMAIEDAAALAEALDS----DDQ----SAGLKRFDSVRK 343 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHH
Confidence 999999999999999987742 221 245789996544
No 40
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.95 E-value=1.1e-25 Score=238.86 Aligned_cols=289 Identities=18% Similarity=0.177 Sum_probs=177.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc-ccccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CGFEGK 189 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~-i~f~~~ 189 (549)
|||||||| +|+++|..|++.|++|+|||+++..+....|.++...+ .++++ +..+...+.... +.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~- 70 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDL---SDLGL------ADCVEHVWPDVYEYRFPK- 70 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhh---hhhch------hhHHhhcCCCceEEecCC-
Confidence 89999965 69999999999999999999987555445666665543 33342 222222222211 11111
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhc
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~ 268 (549)
.....+. ....+++..|++.|.+++.+.|++++ .++++++..+ ++.+.|++++|++++|++||+|||.+|.+++...
T Consensus 71 ~~~~~~~-~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~ 148 (388)
T TIGR01790 71 QPRKLGT-AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRF 148 (388)
T ss_pred cchhcCC-ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccC
Confidence 1111111 12358999999999999988888886 5578888776 6677788878889999999999999996643211
Q ss_pred CCCCCCceeeEEeEeee--ccC-CCceeeeeecCCcccc-cC---CCCceeEEEEecCCCCCccceEEEEEccCCCC---
Q 008915 269 SGRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSVKK-VG---DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--- 338 (549)
Q Consensus 269 ~~~~~~~~~~~vg~~~~--g~~-~~~~~ei~~~~~~~~~-~~---~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~--- 338 (549)
.....-+.+ .|...+ ..+ +.+ ..++++...... .+ +....++| .||.+++ ..++- ......
T Consensus 149 ~~~~~~q~~--~G~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~f~~-~lP~~~~----~~~v~-~~~~~~~~~ 219 (388)
T TIGR01790 149 PLNVGFQVA--YGVEARLSRPPHGPS-SMVIMDARVDQLAAPELKGYRPTFLY-AMPLGST----RVFIE-ETSLADRPA 219 (388)
T ss_pred CCCceEEEE--EEEEEEEcCCCCCCC-ceEEEeccccccccccccCCCCceEE-EeecCCC----eEEEE-eccccCCCC
Confidence 111111111 122221 111 111 123333211110 00 01123788 8999764 22221 111111
Q ss_pred -CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHH
Q 008915 339 -GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417 (549)
Q Consensus 339 -~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~ 417 (549)
....+++.+.+|++.++ + ...++.+...+.+|.....+ ...+|+++||||||++||+||+||+.+++++..
T Consensus 220 ~~~~~~~~~l~~~~~~~g-~-----~~~~i~~~~~~~iP~~~~~~--~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~ 291 (388)
T TIGR01790 220 LPRDRLRQRILARLNAQG-W-----QIKTIEEEEWGALPVGLPGP--FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPG 291 (388)
T ss_pred CCHHHHHHHHHHHHHHcC-C-----eeeEEEeeeeEEEecccCCC--ccCCCeeeeechhcCcCCcccccHHHHHHHHHH
Confidence 11245566666665442 1 12223444567888865432 377999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 008915 418 LSTGVYEAVRGD 429 (549)
Q Consensus 418 La~~i~~Al~~g 429 (549)
+++.|.++++.+
T Consensus 292 la~~l~~~~~~~ 303 (388)
T TIGR01790 292 LAAAIAQALCQS 303 (388)
T ss_pred HHHHHHHHhccC
Confidence 999999998765
No 41
>PTZ00367 squalene epoxidase; Provisional
Probab=99.95 E-value=8.4e-26 Score=249.57 Aligned_cols=294 Identities=16% Similarity=0.177 Sum_probs=168.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC--CCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL--KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~--~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+||||||||| +|+++|+.|+++|++|+|+||.++ +.+.....|+++.++.|+++|+++.. +... .......+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l--~~i~-~~~~~~~v~~ 109 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECA--EGIG-MPCFGYVVFD 109 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhH--hhcC-cceeeeEEEE
Confidence 6999999976 599999999999999999999873 22222336899999999999998642 2111 0111111110
Q ss_pred cCCcccccc---ccccceeCHHHHHHHHHHHH---HhcCCEEEeCceEEEEEEECC-------EEEEEEcC---------
Q 008915 187 EGKGEIWVE---DILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE--------- 244 (549)
Q Consensus 187 ~~~~~l~~~---~~l~~~V~~~~L~~~L~~~a---~~~G~~v~~~t~v~~i~~~~d-------gv~V~~~d--------- 244 (549)
..+..+..+ ...+..+++..|.+.|.+++ ...++++++ ++++++..+++ +++++.++
T Consensus 110 ~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f 188 (567)
T PTZ00367 110 HKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPF 188 (567)
T ss_pred CCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccccc
Confidence 101111111 11234567788888888887 335778865 47888755433 35555443
Q ss_pred --------------CcEEEcCEEEEccCCChHHHHHhcCCCC-CC-ceeeEEeEeeec--cCCCceeeeeecCCcccccC
Q 008915 245 --------------GKILSSHLIIDAMGNFSPVVKQIRSGRK-PD-GVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVG 306 (549)
Q Consensus 245 --------------G~~i~ArlVI~ADG~~S~vrrql~~~~~-~~-~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~ 306 (549)
+++++|++||+|||.+|.+|++++...+ ++ ..+. .+..... .+....+.+++.
T Consensus 189 ~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~-~g~~~~~~~lp~~~~~~v~~g-------- 259 (567)
T PTZ00367 189 REDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHF-VGLVLKNVRLPKEQHGTVFLG-------- 259 (567)
T ss_pred ccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEE-EEEEEecccCCCCCeeEEEEc--------
Confidence 5689999999999999999999975422 11 1121 1222211 112222232221
Q ss_pred CCCceeEEEEecCCCCCccceEEEEEccCC-CCCcccHHHHHHHH-HHhCcc-cccc---cCCceeEeeeeeeeeccccC
Q 008915 307 DSEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QAGSPKLEELLERY-WDLMPE-YQGV---TLDNLEIQRVIYGIFPTYRD 380 (549)
Q Consensus 307 ~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~-~~~~~~L~~l~~~~-~~~lp~-~~~~---~l~~~~~~r~~~g~~P~~~~ 380 (549)
..+.+| .||.+++. ... +..+... .+......+.+.+. ...+|+ ++.. .+.+.. ....+|....
T Consensus 260 --~~gpi~-~yPl~~~~--~r~-lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~----~l~~~p~~~~ 329 (567)
T PTZ00367 260 --KTGPIL-SYRLDDNE--LRV-LVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTK----RIRSMPNARY 329 (567)
T ss_pred --CCceEE-EEEcCCCe--EEE-EEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccC----CeEEeeHhhC
Confidence 124455 68887652 222 2223221 11100112211111 111111 1100 001000 0112344433
Q ss_pred CCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 008915 381 SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 426 (549)
Q Consensus 381 ~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al 426 (549)
.+.++..+|++|||||||++||++|||+|.+++|+..|++.|..+.
T Consensus 330 p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 330 PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 3445677899999999999999999999999999999999887643
No 42
>PRK07588 hypothetical protein; Provisional
Probab=99.95 E-value=2.7e-26 Score=243.97 Aligned_cols=308 Identities=15% Similarity=0.077 Sum_probs=177.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~- 188 (549)
||+||||| +|+++|+.|+++|++|+|+||.+..+. ...+.+++..+..|+++|+++.. .. ..+....+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l--~~---~~~~~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQL--RE---AGYQIEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHH--Hh---ccCCccceEEEcC
Confidence 79999976 599999999999999999999876543 24567788889999999987531 11 111111111110
Q ss_pred -Ccc---cc---cccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 189 -KGE---IW---VEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 189 -~~~---l~---~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
+.. +. .....+ +.+.+..|.+.|.+++. .+++++.+++|++++.++++++|++++|++++||+||+|||
T Consensus 77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence 000 00 001111 46889999999988664 47899999999999998899999998999999999999999
Q ss_pred CChHHHHHhcCCCC-CCc-e-eeEEeEeeeccC--CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEc
Q 008915 259 NFSPVVKQIRSGRK-PDG-V-CLVVGSCARGFK--DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (549)
Q Consensus 259 ~~S~vrrql~~~~~-~~~-~-~~~vg~~~~g~~--~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~ 333 (549)
.+|.+|+++..... +.. . +.........+. .......+. + ...++- .+|..++ ...+++..
T Consensus 156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~-~g~~~~-~~p~~~~---~~~~~~~~ 221 (391)
T PRK07588 156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYN---------E-VGRQVA-RVALRGD---RTLFLFIF 221 (391)
T ss_pred CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEe---------C-CCCEEE-EEecCCC---CeEEEEEE
Confidence 99999997643221 111 1 111010011111 000011110 0 112222 5676554 22233322
Q ss_pred cCCCC----CcccHHHHHHHHHHh-CcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 334 IDPQA----GSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 334 ~~~~~----~~~~L~~l~~~~~~~-lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
..... ......+.+.+.+.. .+....+ ++...-.... .+.+.......++..+|++|+|||||.++|+.|||.
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~ 299 (391)
T PRK07588 222 RAEHDNPPLTPAEEKQLLRDQFGDVGWETPDI-LAALDDVEDL-YFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGS 299 (391)
T ss_pred EcCCccccCCHHHHHHHHHHHhccCCccHHHH-HHhhhcccch-heeeeeeeccCccccCCEEEEEccccCCCCccCCcH
Confidence 21111 111222222222211 1111111 0000000000 001111112235678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
|++++|+..|++.|.... +. .-..|+.||+...
T Consensus 300 n~aieDa~~La~~L~~~~--~~----~~~al~~Y~~~R~ 332 (391)
T PRK07588 300 GLAITEAYVLAGELARAG--GD----HRRAFDAYEKRLR 332 (391)
T ss_pred HHHHHHHHHHHHHHHhcc--CC----HHHHHHHHHHHHH
Confidence 999999999998886421 11 1234689996443
No 43
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.95 E-value=4.6e-25 Score=244.75 Aligned_cols=314 Identities=16% Similarity=0.138 Sum_probs=187.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCccccCCHHHHHHHHHcCCCCcccchhh-hhh----cc-C
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEA-TAT----KF-N 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~IS~~~l~~L~~lGl~~~~eie~~-i~~----~~-~ 180 (549)
.++||+||||| +|+++|+.|+++|++|+||||++... ..+.+.++..+++.|+++|++++. .+. ... .+ .
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l--~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERM--VDKGVSWNVGKVFLR 99 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHH--HhhCceeeceeEEeC
Confidence 46999999965 69999999999999999999997543 346778999999999999997531 111 000 00 0
Q ss_pred CCc-ccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc--CCc-EEEcCEEEE
Q 008915 181 PNR-CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLIID 255 (549)
Q Consensus 181 ~~~-i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--dG~-~i~ArlVI~ 255 (549)
... ..+.............+.+++..|++.|.+++.+. +++++.+++++++..+++++++++. +|. +++|++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg 179 (547)
T PRK08132 100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA 179 (547)
T ss_pred CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence 000 01110000000001123467888999999999876 6799999999999999898887764 344 799999999
Q ss_pred ccCCChHHHHHhcCCCCC---CceeeEEeEeee-ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 256 AMGNFSPVVKQIRSGRKP---DGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 256 ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~-g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
|||.+|.+|+++++.... .....++..... .++. ....++. .+.. ...++| .+|..++ ...+.+
T Consensus 180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~-~~~~-----~~~~~~-~~~~~~~---~~~~~~ 247 (547)
T PRK08132 180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPT--ERWFWFD-PPFH-----PGQSVL-LHRQPDN---VWRIDF 247 (547)
T ss_pred CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCC--eeeEEEe-ccCC-----CCcEEE-EEeCCCC---eEEEEE
Confidence 999999999998765331 111211111111 1110 0011111 0111 123444 4555433 222112
Q ss_pred EccC-CCCCc-ccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchh
Q 008915 332 TYID-PQAGS-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG 409 (549)
Q Consensus 332 ~~~~-~~~~~-~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g 409 (549)
.... ..+.. ...+++.+...+.++.. .+.++.. ...++.......++..+||+|+|||||.++|+.|||+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n 320 (547)
T PRK08132 248 QLGWDADPEAEKKPENVIPRVRALLGED-----VPFELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGAN 320 (547)
T ss_pred ecCCCCCchhhcCHHHHHHHHHHHcCCC-----CCeeEEE--EEeeeeeeeeecccccccEEEEecccccCCCccccccc
Confidence 1111 11111 12222222222223211 1111111 11233333334567889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 410 ~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
++++|+..|+..|...++.. . .-+.|+.|++.+.
T Consensus 321 ~gi~DA~~LawkLa~vl~g~-~---~~~lL~~Ye~eR~ 354 (547)
T PRK08132 321 SGIQDADNLAWKLALVLRGR-A---PDSLLDSYASERE 354 (547)
T ss_pred chHHHHHHHHHHHHHHHcCC-C---cHHHHHHHHHHHH
Confidence 99999999999988877542 1 2346789995443
No 44
>PRK07538 hypothetical protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=239.57 Aligned_cols=360 Identities=17% Similarity=0.199 Sum_probs=203.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~- 188 (549)
||+||||| +|+++|+.|+++|++|+|+||++.++.. ...+++++.++.|.++|+++. +... ......+.+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~---~~~~~~~~~~~~ 76 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAI---GIRTRELAYFNR 76 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhh---CCCCcceEEEcC
Confidence 89999976 5999999999999999999999866532 345788899999999998753 2111 11001111110
Q ss_pred -Cccccc-------cc-cccceeCHHHHHHHHHHHHHhc-CC-EEEeCceEEEEEEECCEEEEEEcCC-----cEEEcCE
Q 008915 189 -KGEIWV-------ED-ILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHL 252 (549)
Q Consensus 189 -~~~l~~-------~~-~l~~~V~~~~L~~~L~~~a~~~-G~-~v~~~t~v~~i~~~~dgv~V~~~dG-----~~i~Arl 252 (549)
+..++. .. ...+.++|..|++.|.+++.+. |. +++.+++|+++..+++++++.+.++ ++++||+
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adl 156 (413)
T PRK07538 77 HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDV 156 (413)
T ss_pred CCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeE
Confidence 111110 00 0124589999999999998764 65 6999999999998888877776542 3899999
Q ss_pred EEEccCCChHHHHHhcCCC-CCC--ceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCC--C--c
Q 008915 253 IIDAMGNFSPVVKQIRSGR-KPD--GVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG--P--L 324 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~-~~~--~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g--~--~ 324 (549)
||+|||.+|.+|+++.... ++. +.....+.+. ..+.... .++.. .. ..+.+. .||..++ + .
T Consensus 157 vIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~-------g~-~~~~~~-~~p~~~~~~~~g~ 225 (413)
T PRK07538 157 LIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGR--SMVMA-------GH-LDGKLV-VYPISEPVDADGR 225 (413)
T ss_pred EEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCC--cEEEE-------cC-CCCEEE-EEECCCCcccCCc
Confidence 9999999999999986433 111 1111111110 0000000 00000 00 011122 4554321 0 0
Q ss_pred cceEEEEEccCC---C------CCcccHHHHHHHHHHhCcc---cccccCCceeEeeeeeeeeccccCC-CCCccCCcEE
Q 008915 325 DRTTYMFTYIDP---Q------AGSPKLEELLERYWDLMPE---YQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRIL 391 (549)
Q Consensus 325 ~~~~~l~~~~~~---~------~~~~~L~~l~~~~~~~lp~---~~~~~l~~~~~~r~~~g~~P~~~~~-~~~~~~~rvl 391 (549)
....+.+..... . ......+++++.|....+. +... +... ... -.+|.+... ..++..+|++
T Consensus 226 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~---~~~-~~~p~~~~~~~~~w~~grv~ 300 (413)
T PRK07538 226 QLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPAL-IRAA---EAI-YEYPMVDRDPLPRWTRGRVT 300 (413)
T ss_pred eEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHH-HhcC---cce-eeccccccCCCCcccCCcEE
Confidence 112222222111 0 0111345554433222111 1111 1100 011 124555433 2356779999
Q ss_pred EeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhH---H
Q 008915 392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLA---K 468 (549)
Q Consensus 392 LVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~---~ 468 (549)
|||||||.++|++|||.|.+++|+..|++.|.+. ++ .-+.|+.|++...+......+ .+... .
T Consensus 301 LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~----~~~aL~~Ye~~R~~~~~~~~~-------~s~~~~~~~ 366 (413)
T PRK07538 301 LLGDAAHPMYPVGSNGASQAILDARALADALAAH---GD----PEAALAAYEAERRPATAQIVL-------ANRLNGPEG 366 (413)
T ss_pred EEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CC----HHHHHHHHHHHhhHHHHHHHH-------HhhhcChHH
Confidence 9999999999999999999999999999888652 22 234578999654433222222 11110 0
Q ss_pred HHHHHHhhCCCcHHHHHhhcChhhhHhhHHHHHHHHHH
Q 008915 469 TLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYY 506 (549)
Q Consensus 469 ~l~~~~~~~P~ll~~~~~~~g~~~~~~~~~~~~~~~~~ 506 (549)
++-......|.-+..+...+.-..+..++..|-.+..|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
T PRK07538 367 VLQLVEERAPGGFADIDDVISSAELEAIAARYKAAAGF 404 (413)
T ss_pred HHHHHHhhCCCCccchhhcCCHHHHHHHHHHHHHhhCC
Confidence 01112334678888888777766666666555544443
No 45
>PLN02985 squalene monooxygenase
Probab=99.94 E-value=1.4e-24 Score=238.22 Aligned_cols=317 Identities=15% Similarity=0.187 Sum_probs=175.5
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC-CCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccC----
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEATATKFN---- 180 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~-~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~---- 180 (549)
.+.+||||||||| +|+++|++|+++|++|+|+||... +.......++++.+..|+++|+++.. +........
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l--~~~~~~~~~~~~v 117 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCL--EGIDAQKATGMAV 117 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchh--hhccCcccccEEE
Confidence 3457999999976 599999999999999999999854 22223446888899999999998642 221111111
Q ss_pred --CCc---ccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCE---EEEEEcCCc--EEE
Q 008915 181 --PNR---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--ILS 249 (549)
Q Consensus 181 --~~~---i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg---v~V~~~dG~--~i~ 249 (549)
.+. +.|.....-......++.+++..|.+.|.+++.+. ++++.++ +++++..+++. +++...+|+ +++
T Consensus 118 ~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 118 YKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred EECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence 110 11110000000012346789999999999999876 5677755 57777655543 333334565 577
Q ss_pred cCEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec--cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccce
Q 008915 250 SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (549)
Q Consensus 250 ArlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (549)
||+||+|||.+|.+|++++...+...... ++..... .+......+++. ..+.+. .+|.+++ ..
T Consensus 197 AdLVVgADG~~S~vR~~l~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~ypi~~~---~~ 261 (514)
T PLN02985 197 APLTVVCDGCYSNLRRSLNDNNAEVLSYQ-VGYISKNCRLEEPEKLHLIMS----------KPSFTM-LYQISST---DV 261 (514)
T ss_pred CCEEEECCCCchHHHHHhccCCCcceeEe-EEEEEccccCCCCCcceEEcC----------CCceEE-EEEeCCC---eE
Confidence 99999999999999999975433211111 1111110 111111222211 112222 5676654 22
Q ss_pred EEEEEccCC-CCC--cccHHHHHHHHH-HhCcc-cccc---cCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCC
Q 008915 328 TYMFTYIDP-QAG--SPKLEELLERYW-DLMPE-YQGV---TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399 (549)
Q Consensus 328 ~~l~~~~~~-~~~--~~~L~~l~~~~~-~~lp~-~~~~---~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~ 399 (549)
..++.+... .+. ...+.+.+.+.. ..+|+ +++. ..++.. .....|...........+|++|+|||||+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~----~~~~~p~~~l~~~~~~~~~vvLiGDAaH~ 337 (514)
T PLN02985 262 RCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA----HIKVVPTKRMSATLSDKKGVIVLGDAFNM 337 (514)
T ss_pred EEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhccccc----ceeecCcccccccccCCCCEEEEeccccc
Confidence 222222211 110 112222222211 11111 1110 001100 01123433322223445899999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCCh-hhhHhhhhhhhcCc
Q 008915 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDS-YSLSLLNPYMKLGD 447 (549)
Q Consensus 400 v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~-~~l~~L~~Y~~l~d 447 (549)
+||++|||+|.++.|+..|++.|... . +..+. ...+.|+.|++.+.
T Consensus 338 ~~P~~GQGmn~AleDA~vLa~lL~~~-~-~~~~~~~~~~aL~~y~~~Rk 384 (514)
T PLN02985 338 RHPAIASGMMVLLSDILILRRLLQPL-S-NLGNANKVSEVIKSFYDIRK 384 (514)
T ss_pred CCCCccccHhHHHHHHHHHHHHhhhc-c-cccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999988653 1 10011 22356789996544
No 46
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.94 E-value=1.5e-24 Score=243.67 Aligned_cols=314 Identities=17% Similarity=0.153 Sum_probs=187.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhc---cCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATK---FNPN 182 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~---~~~~ 182 (549)
.++||+||||| +|+++|+.|++. |++|.||||.+.+.. .+...|++.+++.|+++|++++..-+...... +++.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 37999999965 699999999994 999999999875433 35567899999999999998642111111000 1110
Q ss_pred -----ccc----ccCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC---EEEEEEc-----
Q 008915 183 -----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA----- 243 (549)
Q Consensus 183 -----~i~----f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d---gv~V~~~----- 243 (549)
.+. +........+.. .+.+++..+.+.|.+++.+.|. ++..++++++++++++ .|+|+++
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~-~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFP-HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CccccceeccccccccCCCCCCCc-cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 000 000000000111 1467888999999999988765 7788999999987653 4777774
Q ss_pred -CC--cEEEcCEEEEccCCChHHHHHhcCCCC---CCceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEE
Q 008915 244 -EG--KILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEA 316 (549)
Q Consensus 244 -dG--~~i~ArlVI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~ 316 (549)
+| ++++||+||+|||++|.||+++++... ..+.+.++.... ..+++......+.. +.+..++ .
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~--------~~~g~~~--~ 259 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQS--------ASEGSIL--L 259 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEec--------CCCceEE--E
Confidence 34 489999999999999999999987543 222222221111 12322111101110 0022333 3
Q ss_pred ecCCCCCccceEEEEEccCCC--C----CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCc-----
Q 008915 317 FPAGSGPLDRTTYMFTYIDPQ--A----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA----- 385 (549)
Q Consensus 317 fP~~~g~~~~~~~l~~~~~~~--~----~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~----- 385 (549)
+|..++. ...+.+...... . ...+.+++.+.+.+.++.+.. ....+.+ +..++.....+.++
T Consensus 260 ~P~~~g~--~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~-~~~~v~w----~s~y~i~~r~a~~f~~~~~ 332 (634)
T PRK08294 260 IPREGGY--LVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTL-DVKEVAW----WSVYEVGQRLTDRFDDVPA 332 (634)
T ss_pred EECCCCe--EEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCC-ceeEEeE----Eecccccceehhhcccccc
Confidence 6765441 122222221111 0 112566766666555543211 1112211 11222222222222
Q ss_pred -----cCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 386 -----AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 386 -----~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
..+||+|+|||||.++|..|||+|.++.|+..|+..|...++.. + ....|..|+.
T Consensus 333 ~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~--a--~~~lL~tYe~ 392 (634)
T PRK08294 333 EEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR--S--PPELLHTYSA 392 (634)
T ss_pred cccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC--C--cHHHHHHHHH
Confidence 35899999999999999999999999999999999998887642 2 2345789994
No 47
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.94 E-value=4.4e-25 Score=235.03 Aligned_cols=310 Identities=15% Similarity=0.139 Sum_probs=172.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC---CCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~---~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
.+||+||||| +|+++|+.|+++|++|+|+||.+.+. ..+...|+++.++.|+++|++++. ... ......+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l--~~~---~~~~~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERM--DRE---GLVHEGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHH--Hhc---CceecceE
Confidence 4899999976 59999999999999999999998532 224445889999999999998542 111 01001111
Q ss_pred cc-CCcc--cccccc---cc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-ECCEEEEEEc-CCc--EEEcCEEE
Q 008915 186 FE-GKGE--IWVEDI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLII 254 (549)
Q Consensus 186 f~-~~~~--l~~~~~---l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-dG~--~i~ArlVI 254 (549)
+. ++.. +..+.. .. ....+..+.+.|.+++.+.|++++.+++++.+.. +++.+.|++. +|+ +++||+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence 11 0000 111100 01 1234567888899998888999999988877754 5566777775 675 79999999
Q ss_pred EccCCChHHHHHhcCCCCC--Cceee--EEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 255 DAMGNFSPVVKQIRSGRKP--DGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~~--~~~~~--~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
+|||.+|.||++++....+ .+... ..+.... .+ .....+++. +.+.++.+ +|..++. ...+.
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~--------~~~~~~~~--~~~~~~~--~~~~~ 222 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSE-TP-PVSHELIYS--------NHERGFAL--CSMRSAT--RSRYY 222 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEecC-CC-CCCCceEEE--------eCCCceEE--EeccCCC--cceEE
Confidence 9999999999997543211 11000 0011100 00 000011110 00122222 2332110 11122
Q ss_pred EEccCCCC-CcccHHHHHHHHHHhCc-ccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 331 FTYIDPQA-GSPKLEELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 331 ~~~~~~~~-~~~~L~~l~~~~~~~lp-~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
+....... .....+.+.+...+.++ .+.........+. ....|.......++..+|++|||||||.++|+.|||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~ 299 (390)
T TIGR02360 223 VQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIE---KSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGL 299 (390)
T ss_pred EEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccc---eeeeeHHhhccccCccCCEEEEEccccCCCCCcCCch
Confidence 22211000 00011111222222221 1111100000000 1223443333446778999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
|++++|+..|++.|.++..++ .-..|+.|++..
T Consensus 300 n~aieDA~~La~~L~~~~~~~-----~~~al~~Y~~~R 332 (390)
T TIGR02360 300 NLAASDVHYLYEALLEHYQEG-----SSAGIEGYSARA 332 (390)
T ss_pred hHHHHHHHHHHHHHHHHhccC-----hHHHHHHHHHHH
Confidence 999999999999987765432 123468899644
No 48
>PRK05868 hypothetical protein; Validated
Probab=99.94 E-value=2e-24 Score=228.58 Aligned_cols=307 Identities=16% Similarity=0.089 Sum_probs=175.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
-||+||||| +|+++|+.|+++|++|+|+||++.++.. ....+++..++.|+++|+++. ++.. ........+....
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~--~~~~-~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA--AQEH-KTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHH--HHhh-ccCccceEEEeCC
Confidence 489999976 5999999999999999999999876543 334677888999999998753 2111 0011000000000
Q ss_pred Ccccc-------ccc---cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 189 KGEIW-------VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 189 ~~~l~-------~~~---~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
+..+. ... ...+.+.+..|.+.|.+++ ..|++++.++++++++.++++++|++++|++++||+||+|||
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 00000 000 0124577888888776544 468899999999999988889999999999999999999999
Q ss_pred CChHHHHHhcCCCCC-Cc-eeeE--EeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 259 NFSPVVKQIRSGRKP-DG-VCLV--VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 259 ~~S~vrrql~~~~~~-~~-~~~~--vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
.+|.+|+++...... .. .... ...+....+ .+....++ . +.+. .+. .||..++......+.|...
T Consensus 158 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~-------~-g~~~-~~~-~~~~~~~~~~~~~~~~~~~ 226 (372)
T PRK05868 158 LHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLE-LDYWQTWH-------Y-GDST-MAG-VYSARNNTEARAALAFMDT 226 (372)
T ss_pred CCchHHHHhcCCcccceeecceEEEEEEcCCCCC-CCcceEEE-------e-cCCc-EEE-EEecCCCCceEEEEEEecC
Confidence 999999998543211 11 0000 001110000 01111110 0 1112 222 4666543111112222221
Q ss_pred CCCCC---cc-cHHHHHHHHHHh---CcccccccCCceeEeeeeeeeec-cccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 335 DPQAG---SP-KLEELLERYWDL---MPEYQGVTLDNLEIQRVIYGIFP-TYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 335 ~~~~~---~~-~L~~l~~~~~~~---lp~~~~~~l~~~~~~r~~~g~~P-~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
+...+ .+ ..+++.+.|... .|.+.+. +.... .. +++ .......+++.+||+|||||||.++|++||
T Consensus 227 ~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~-~~~~~--~~---~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~Gq 300 (372)
T PRK05868 227 ELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHY-MRSAP--DF---YFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQ 300 (372)
T ss_pred CcccccCChHHHHHHHHHHHhhCCCchHHHHhh-cccCC--ce---eeccceEEecCCCCCCCeeeeecccccCCCccCc
Confidence 11101 11 233444444311 1222211 11110 00 122 111122366789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
|.|+++.|+..|++.|... .+++ -+.|+.||+
T Consensus 301 Ga~~AleDa~~La~~L~~~--~~~~----~~al~~ye~ 332 (372)
T PRK05868 301 GTSVALLGAYILAGELKAA--GDDY----QLGFANYHA 332 (372)
T ss_pred cHHHHHHHHHHHHHHHHhc--CCCH----HHHHHHHHH
Confidence 9999999999999888542 1111 234688994
No 49
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.94 E-value=1.6e-24 Score=230.54 Aligned_cols=311 Identities=13% Similarity=0.112 Sum_probs=187.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..||+||||| +|+++|..|+++|++|+|+||.+.++.. +...|+++.++.|.++|+++.. ... .+....+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~~~---~~~~~~~~~~ 78 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAA--RQR---AVFTDHLTMM 78 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHH--Hhh---ccCCcceEEE
Confidence 5899999976 5999999999999999999999876543 3456889999999999987532 111 1101111111
Q ss_pred C---Ccc---cccc----ccc---cceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 188 G---KGE---IWVE----DIL---NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 188 ~---~~~---l~~~----~~l---~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
. +.. +... ..+ .+.+++..|.+.|.+++.+.+ ++++.+++++++..+++++.|.+.+|++++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 158 (396)
T PRK08163 79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL 158 (396)
T ss_pred eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence 0 000 0000 001 135889999999999998775 7999999999999888889998888889999999
Q ss_pred EEccCCChHHHHHhcCC-CCCCceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~-~~~~~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
|+|||.+|.+|+++... ..+.......+... ..++.. .. ........+ ...++| .||..++. ...+++
T Consensus 159 V~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~~-----~~~~~~~~g-~~~~~~-~~p~~~g~--~~~~~~ 228 (396)
T PRK08163 159 IGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPED-LR-----INAPVLWAG-PHCHLV-HYPLRGGE--QYNLVV 228 (396)
T ss_pred EECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcch-hc-----cCccEEEEc-CCceEE-EEEecCCe--EEEEEE
Confidence 99999999999887322 12222111111111 111110 00 000000001 123455 67876551 222223
Q ss_pred EccCCCC-----CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCC
Q 008915 332 TYIDPQA-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSF 405 (549)
Q Consensus 332 ~~~~~~~-----~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Pltg 405 (549)
.+..... ...+.+++.+.|....|.++.. ++.... +..++.+... ..++..+|++|+|||||.++|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~G 303 (396)
T PRK08163 229 TFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQM-LDKPTS----WKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMA 303 (396)
T ss_pred EECCCCCcccccCCCCHHHHHHHHcCCChHHHHH-HhcCCc----eeEccccCCCcccccccCcEEEEecccccCCcchh
Confidence 2221110 1123455555554445554432 111110 0111222111 225567999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 406 ~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
||.|.+++|+..|++.|... .++ .-..|+.|++..
T Consensus 304 qG~n~ai~Da~~La~~L~~~--~~~----~~~al~~y~~~R 338 (396)
T PRK08163 304 QGACMALEDAVTLGKALEGC--DGD----AEAAFALYESVR 338 (396)
T ss_pred ccHHHHHHHHHHHHHHHHhc--ccc----HHHHHHHHHHHH
Confidence 99999999999999877542 111 124478999544
No 50
>PRK06126 hypothetical protein; Provisional
Probab=99.93 E-value=2.9e-24 Score=238.29 Aligned_cols=313 Identities=14% Similarity=0.155 Sum_probs=182.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhh-hhcc------
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT-ATKF------ 179 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i-~~~~------ 179 (549)
.++||+||||| +|+++|+.|+++|++|+|+||++.+.. .+...+++.+++.|+++|++++ +.+.- ...+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~--l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADE--VRSAGLPVDYPTDIAY 83 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHH--HHhhcCCccccCCceE
Confidence 36999999975 699999999999999999999976543 3566799999999999998753 21110 0000
Q ss_pred ----CCC---cccccCCc-cc---------cccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEE
Q 008915 180 ----NPN---RCGFEGKG-EI---------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLL 241 (549)
Q Consensus 180 ----~~~---~i~f~~~~-~l---------~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~ 241 (549)
... ++.+.... .. +......+.+++..|.+.|.+++.+. +++++.+++|+++..++++++++
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~ 163 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTAT 163 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEE
Confidence 000 01110000 00 00011235688889999999999765 78999999999999988888877
Q ss_pred Ec---CCc--EEEcCEEEEccCCChHHHHHhcCCCCCCc-eeeEEeEeee--ccCC---CceeeeeecCCcccccCCCCc
Q 008915 242 LA---EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDG-VCLVVGSCAR--GFKD---NSTSDVIYSSSSVKKVGDSEV 310 (549)
Q Consensus 242 ~~---dG~--~i~ArlVI~ADG~~S~vrrql~~~~~~~~-~~~~vg~~~~--g~~~---~~~~ei~~~~~~~~~~~~~~~ 310 (549)
+. +|+ +++||+||+|||.+|.||+++++...... ....+..... .... .......+...| +
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p-------~- 235 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNP-------D- 235 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECC-------C-
Confidence 64 354 79999999999999999999976532111 0000111111 0000 000000000000 0
Q ss_pred eeEEEEecCCCCCccceEEEEE-ccCCCCC-cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCC
Q 008915 311 QLFWEAFPAGSGPLDRTTYMFT-YIDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFN 388 (549)
Q Consensus 311 ~~~W~~fP~~~g~~~~~~~l~~-~~~~~~~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~ 388 (549)
.... .+|...+ ..+.+. +...... ..+-++..+.+.+.++. .. ..++... ..++.......++..+
T Consensus 236 ~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~--~~w~~~~~~a~~~~~g 303 (545)
T PRK06126 236 RRGV-LVAIDGR----DEWLFHQLRGGEDEFTIDDVDARAFVRRGVGE--DI---DYEVLSV--VPWTGRRLVADSYRRG 303 (545)
T ss_pred ccEE-EEEECCC----CeEEEEEecCCCCCCCCCHHHHHHHHHHhcCC--CC---CeEEEee--cccchhheehhhhccC
Confidence 0111 1222211 122222 2111111 11222222222222221 11 1111111 1233333344577789
Q ss_pred cEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 389 RILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 389 rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
||+|+|||||.++|+.|||+|+++.|+..|+..|...++.. + ..+.|+.|++.+.
T Consensus 304 Rv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~--~--~~~lL~~Y~~eR~ 358 (545)
T PRK06126 304 RVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW--A--GPALLDSYEAERR 358 (545)
T ss_pred CEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC--C--cHHHHhhhHHHhh
Confidence 99999999999999999999999999999999998776431 1 2356789995443
No 51
>PRK06847 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-23 Score=222.29 Aligned_cols=308 Identities=18% Similarity=0.158 Sum_probs=181.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..||+||||| +|+++|+.|+++|++|+|+||.+.++.. ....+++..++.|.++|+++. +....+....+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~-----~~~~~~~~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE-----CLEAGFGFDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH-----HHHhCCCccceEEE
Confidence 5799999976 5999999999999999999998765432 334678889999999998642 11111111111111
Q ss_pred C--Ccc--------ccccc-cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEc
Q 008915 188 G--KGE--------IWVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (549)
Q Consensus 188 ~--~~~--------l~~~~-~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~A 256 (549)
. +.. ..... .....+++..|.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+|++++||+||+|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A 158 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA 158 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence 0 000 00000 112457889999999999988899999999999999888888898888989999999999
Q ss_pred cCCChHHHHHh-cCCCCCC--ceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEc
Q 008915 257 MGNFSPVVKQI-RSGRKPD--GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (549)
Q Consensus 257 DG~~S~vrrql-~~~~~~~--~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~ 333 (549)
||.+|.+++++ +....+. ......+.... .+..+...++.. ....+. .+|..++ ..+++..
T Consensus 159 dG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~-~~p~~~~----~~~~~~~ 222 (375)
T PRK06847 159 DGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPR-PAEVDRSLMYLG----------PTTKAG-VVPLSED----LMYLFVT 222 (375)
T ss_pred cCCCcchhhHhcCCCCCceeccceEEEEEecC-CCCccceEEEeC----------CCcEEE-EEcCCCC----eEEEEEe
Confidence 99999999987 3221211 11100010000 000000011110 112222 4566543 2223322
Q ss_pred cCCCC----CcccHHHHHHHHHHhCcc--cccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 334 IDPQA----GSPKLEELLERYWDLMPE--YQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 334 ~~~~~----~~~~L~~l~~~~~~~lp~--~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+... ....+.+.+.+.+...+. .+.. .+.+.-... ....|.+.. .+.++..+|++|||||||.++|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~Gq 300 (375)
T PRK06847 223 EPRPDNPRIEPDTLAALLRELLAPFGGPVLQEL-REQITDDAQ-VVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQ 300 (375)
T ss_pred ccCcccccCChHHHHHHHHHHHhhcCchHHHHH-HHhcCCccc-eeeccHhhccCCCCccCCeEEEEechhccCCCCccc
Confidence 11110 011233333333332221 1111 000100001 112344332 22356789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
|.|.+++|+..|++.|... . ...+.|+.|++.+.
T Consensus 301 G~n~aieDA~~La~~L~~~----~---~~~~al~~Y~~~R~ 334 (375)
T PRK06847 301 GAGMAIEDAIVLAEELARH----D---SLEAALQAYYARRW 334 (375)
T ss_pred cHHHHHHHHHHHHHHHhhC----C---cHHHHHHHHHHHHH
Confidence 9999999999988877541 1 12345689995443
No 52
>PRK07236 hypothetical protein; Provisional
Probab=99.93 E-value=8.5e-24 Score=224.65 Aligned_cols=318 Identities=16% Similarity=0.170 Sum_probs=174.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC--ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~--r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+||+||||| +|+++|+.|+++|++|+|+||.+.+... ....++++.++.|.++|+++..+. ........+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~----~~~~~~~~~~~ 81 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI----GVPSRERIYLD 81 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc----ccCccceEEEe
Confidence 5899999976 5999999999999999999998754322 234578899999999999753211 00000000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
..+..+.........+.+..+.+.|.+.+ .+.+++.+++|+++..++++++|++++|++++|++||+|||.+|.+|++
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~ 159 (386)
T PRK07236 82 RDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQ 159 (386)
T ss_pred CCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHH
Confidence 00111110000011245667777777654 2458999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCC--ceeeEEeEeee-ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCc------cceEEEEEccCCC
Q 008915 267 IRSGRKPD--GVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL------DRTTYMFTYIDPQ 337 (549)
Q Consensus 267 l~~~~~~~--~~~~~vg~~~~-g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~------~~~~~l~~~~~~~ 337 (549)
+....++. +.+...+.... .++.. ..+.+.. .+....+ ....++ .||..+... ....+++......
T Consensus 160 l~~~~~~~~~g~~~~~~~v~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T PRK07236 160 LLPDVRPTYAGYVAWRGLVDEAALPPE-ARAALRD--RFTFQLG-PGSHIL-GYPVPGEDGSTEPGKRRYNWVWYRNAPA 234 (386)
T ss_pred hCCCCCCCcCCeEEEEEecchHHcCch-hhhhccc--ceEEEEc-CCceEE-EEECCCCCCCcCCCCcEEEEEEEecCCC
Confidence 84322222 21111111111 01100 0000000 0000000 011122 333221100 0111111110000
Q ss_pred ---------------------C--Ccc-cHHHHHHHHHHhC-cccccccCCceeEeeeeeeeeccccCCCCCccCCcEEE
Q 008915 338 ---------------------A--GSP-KLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ 392 (549)
Q Consensus 338 ---------------------~--~~~-~L~~l~~~~~~~l-p~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlL 392 (549)
+ ..+ .++++.+.+...+ |.++.+ ++... .+ + ..+.+.....++..+|++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~--~~-~-~~~~~~~~~~~~~~grv~L 309 (386)
T PRK07236 235 GEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAEL-VEATA--QP-F-VQAIFDLEVPRMAFGRVAL 309 (386)
T ss_pred ccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHH-HhhCc--Cc-h-hhhhhcccCcccccCcEEE
Confidence 0 011 2333333333212 223332 11111 00 0 1233333334567899999
Q ss_pred eCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCccc
Q 008915 393 FGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPV 449 (549)
Q Consensus 393 VGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~ 449 (549)
||||||.++|+.|||.|.+++|+..|++.|..+. . ..-..|+.|++.+.+.
T Consensus 310 iGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~----~~~~al~~Ye~~R~~r 360 (386)
T PRK07236 310 LGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--G----DIDAALAAWEAERLAV 360 (386)
T ss_pred EecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--c----chHHHHHHHHHHhhHH
Confidence 9999999999999999999999999998886531 1 1224568999655433
No 53
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.92 E-value=7.9e-25 Score=223.64 Aligned_cols=327 Identities=17% Similarity=0.147 Sum_probs=208.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhC----CCcEEEEccCCCCC----------CCccccCCHHHHHHHHHcCCCCcccchhh
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKG----------REQEWNISRKELLELVESGILVEDDIDEA 174 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~----GlrVlLIEr~~~~~----------~~r~~~IS~~~l~~L~~lGl~~~~eie~~ 174 (549)
.||||||||| +|.++|+.|... -+||+|+|-...+. .+|.-.+|+.++..|..+|+|+. +.+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~--i~~~ 113 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDH--IFHD 113 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHH--hhhh
Confidence 7999999975 699999999743 68999999873321 23556799999999999999863 2222
Q ss_pred hhhccCC---------CcccccCCccccccccccceeCHHHHHHHHHH--HHHh-cCCEEEeCceEEEEEEE------C-
Q 008915 175 TATKFNP---------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKK--RFIS-LGGVIFEGYSVSSICTY------E- 235 (549)
Q Consensus 175 i~~~~~~---------~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~--~a~~-~G~~v~~~t~v~~i~~~------~- 235 (549)
....++. ..+.|.. .... ...++.+++..+...|.. ...+ ..+++...+.+.++... +
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~-d~~~--~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n 190 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDH-DNVG--IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN 190 (481)
T ss_pred ccccccceeeecccchhhhhhcc-cccc--ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence 2222211 1122221 1111 123578888888888873 3333 36799999999988762 1
Q ss_pred -CEEEEEEcCCcEEEcCEEEEccCCChHHHHHhcCC---CCCCceeeEE--eEeeeccCCCceeeeeecCCccc--ccCC
Q 008915 236 -NAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG---RKPDGVCLVV--GSCARGFKDNSTSDVIYSSSSVK--KVGD 307 (549)
Q Consensus 236 -dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~~~---~~~~~~~~~v--g~~~~g~~~~~~~ei~~~~~~~~--~~~~ 307 (549)
....|++.||..+.+||+|+|||.+|++|+..++. +.++.+..+. ..+.+........+.|...||+. |+++
T Consensus 191 ~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d 270 (481)
T KOG3855|consen 191 GMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270 (481)
T ss_pred cceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence 24567778899999999999999999999988775 3455544322 12221122345567777788887 4556
Q ss_pred CCceeEEEEecCCCCC---------cc-c-eEEEEEccCCC-CCc-----ccH----HHHHHHHHHhCcccccccCCcee
Q 008915 308 SEVQLFWEAFPAGSGP---------LD-R-TTYMFTYIDPQ-AGS-----PKL----EELLERYWDLMPEYQGVTLDNLE 366 (549)
Q Consensus 308 ~~~~~~W~~fP~~~g~---------~~-~-~~~l~~~~~~~-~~~-----~~L----~~l~~~~~~~lp~~~~~~l~~~~ 366 (549)
+-..++|..-|..... .+ . ..+...+.+.. ... +.. +.++.+.. ...+.+.. ..-++
T Consensus 271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k-~~~~~q~p-p~V~~ 348 (481)
T KOG3855|consen 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSK-RLANQQYP-PSVFE 348 (481)
T ss_pred ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccC-cccccccC-CeEEE
Confidence 6678899654322110 00 0 00000000000 000 011 11221111 11110000 01122
Q ss_pred EeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 367 IQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 367 ~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
+.......||+.+.++..++.+|+.|||||||.+||++|||.|++..|+..|.+.+.+|+.+|. +.++...|+.|++
T Consensus 349 v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~-DlgS~~~L~~y~~ 425 (481)
T KOG3855|consen 349 VGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGL-DLGSVEHLEPYER 425 (481)
T ss_pred ecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcc-cccchhhhhHHHH
Confidence 2233334689888778899999999999999999999999999999999999999999999984 8899999999995
No 54
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.90 E-value=5.2e-22 Score=221.11 Aligned_cols=320 Identities=19% Similarity=0.159 Sum_probs=179.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CC-C---ccccCCHHHHHHHHHcCCCCcccchhh--hh----
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GR-E---QEWNISRKELLELVESGILVEDDIDEA--TA---- 176 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~-~---r~~~IS~~~l~~L~~lGl~~~~eie~~--i~---- 176 (549)
..++|+||||| +|+++|+.|+++|++|.|+||.+.. +. . +...|+++.++.|+++|++...++... +.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 46899999976 5999999999999999999997632 11 1 346799999999999997533222211 00
Q ss_pred hcc-C--CCc--ccccCCccc-cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEc
Q 008915 177 TKF-N--PNR--CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS 250 (549)
Q Consensus 177 ~~~-~--~~~--i~f~~~~~l-~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~A 250 (549)
..+ . .+. +.+...... .......+.|+|..|++.|.+++.. ..++.+++|+++..++++++|.+++|++++|
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~a 237 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYEG 237 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEEc
Confidence 000 0 010 111100000 0001123578999999999766421 2467899999999999999999989989999
Q ss_pred CEEEEccCCChHHHHHhcCCCCC--CceeeEEeEeeeccCC--CceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKP--DGVCLVVGSCARGFKD--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~--~~~~~~vg~~~~g~~~--~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
++||+|||.+|.+|+++....++ .+.+...+.+ ...+. .......+ .+ ..+++- .+|..++. .
T Consensus 238 DlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~-~~~p~~~~~~~~~~~--------~G-~~~~~v-~~~v~~g~--~ 304 (668)
T PLN02927 238 DLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIA-DFIPADIESVGYRVF--------LG-HKQYFV-SSDVGGGK--M 304 (668)
T ss_pred CEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEc-CCCcccccccceEEE--------Ec-CCeEEE-EEcCCCCe--E
Confidence 99999999999999987432222 1111111111 10000 00000000 00 122221 33443331 1
Q ss_pred eEEEEEccCC---CCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCC-CCccCCcEEEeCCCCCCCCC
Q 008915 327 TTYMFTYIDP---QAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 327 ~~~l~~~~~~---~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~-~~~~~~rvlLVGDAA~~v~P 402 (549)
..+.|...+. .......+++.+.|-...|.++.+ +...... ....++.+...+ .++..+|++|+|||||.++|
T Consensus 305 ~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~el-I~~t~~~--~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P 381 (668)
T PLN02927 305 QWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDL-LHATEED--AILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQP 381 (668)
T ss_pred EEEEEEECCccccccchhHHHHHHHHhccCCHHHHHH-HHhCccc--cceeeeEEeccCCCccccCcEEEEcCccCCCCC
Confidence 1111211110 001112333333332233333322 1111000 001123332222 24567999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCC---CChhhhHhhhhhhhcC
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDF---VDSYSLSLLNPYMKLG 446 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~---l~~~~l~~L~~Y~~l~ 446 (549)
..|||.|+++.|+..|+..|.++++... ........|+.|++.+
T Consensus 382 ~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R 428 (668)
T PLN02927 382 NMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESR 428 (668)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHH
Confidence 9999999999999999999988764310 0112234578999543
No 55
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.90 E-value=2e-22 Score=216.11 Aligned_cols=320 Identities=16% Similarity=0.174 Sum_probs=180.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCccc
Q 008915 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA---TKFNPNRCG 185 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~~~~~~~i~ 185 (549)
.|+||||| .|+++|..|+++| ++|+|+||.+..+.. ....|+++.+..|..+|+.+. ++..-. ..+....+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~--~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEA--YTQVADSTPAPWQDIWFE 79 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhH--HHHHhcCCCccCcceeEE
Confidence 58999976 5889999999998 699999998765432 344678899999999998643 211110 000000011
Q ss_pred ccCCc---cccc--ccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 186 FEGKG---EIWV--EDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 186 f~~~~---~l~~--~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+.... .+.. ....+ ..++|..|.+.|.+.+. ...++.+++|+++..++++++|.+++|.+++|++||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence 11100 0000 00111 25788889998887763 35688899999999888999999988989999999999999
Q ss_pred ChHHHHHhcCC-----CCCC--ceeeEEeEeee-ccCCC-ce--eeeeecCCcccccCCCCceeEEEEecCCCCCccceE
Q 008915 260 FSPVVKQIRSG-----RKPD--GVCLVVGSCAR-GFKDN-ST--SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (549)
Q Consensus 260 ~S~vrrql~~~-----~~~~--~~~~~vg~~~~-g~~~~-~~--~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~ 328 (549)
+|.+|+++... ..+. +.+..-+.+.. .+... .. .+-.....+.... + ..+.++ .||..++. ...
T Consensus 158 ~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~p~~~g~--~~~ 232 (414)
T TIGR03219 158 KSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYL-G-LDGHIL-TFPVRQGR--LIN 232 (414)
T ss_pred cHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEE-c-CCCeEE-EEECCCCc--EEE
Confidence 99999987421 1111 11111111110 00000 00 0000000000001 1 123344 57877652 222
Q ss_pred EEEEccCCC-------C-----CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCC
Q 008915 329 YMFTYIDPQ-------A-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGD 395 (549)
Q Consensus 329 ~l~~~~~~~-------~-----~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGD 395 (549)
++....+.. . .....+++.+.|....|.++.+ ++... .. ..++.+.. ...+++.+|++||||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~~--~~--~~~~~~~~~~~~~w~~grv~LiGD 307 (414)
T TIGR03219 233 VVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL-LECIP--AP--TLWALHDLAELPGYVHGRVALIGD 307 (414)
T ss_pred EEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH-HHhCC--CC--CceeeeecccccceeeCcEEEEEc
Confidence 222221110 0 0113445555443333333322 11110 00 01222221 123567799999999
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcc
Q 008915 396 ASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDP 448 (549)
Q Consensus 396 AA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~ 448 (549)
|||.+.|..|||.|+++.|+..|++.|......+. + --..|+.||+...+
T Consensus 308 AAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~-~--~~~al~~Ye~~R~~ 357 (414)
T TIGR03219 308 AAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAG-D--LPALLEAYDDVRRP 357 (414)
T ss_pred ccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcc-h--HHHHHHHHHHHHhH
Confidence 99999999999999999999999988876533221 1 12347899965443
No 56
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.90 E-value=1.1e-21 Score=207.74 Aligned_cols=279 Identities=22% Similarity=0.353 Sum_probs=178.9
Q ss_pred cEEEEcch-HHHHHHHHH--HhCCCcEEEEccCCCC--CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~L--Ar~GlrVlLIEr~~~~--~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
|||||||| +|+++|..| ++.|++|+|||+++.. ...+.|..+...+. .++.++...++...+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~-----------~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLG-----------PLDSLVSHRWSGWRVYF 69 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccccc-----------chHHHHheecCceEEEe
Confidence 89999965 699999999 8889999999998765 33345644322211 13456666666555655
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
.+...... ....+.|++..|++.|.+++. +++.++.+++|+++..+++++.|.+++|++++|++||||+|..|+..+.
T Consensus 70 ~~~~~~~~-~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~ 147 (374)
T PF05834_consen 70 PDGSRILI-DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARP 147 (374)
T ss_pred CCCceEEc-ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccc
Confidence 54332211 111247999999999999998 6667888999999999998888999899999999999999988773322
Q ss_pred hcCCCCCCceeeEEeEeee---c-cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCC--Cc
Q 008915 267 IRSGRKPDGVCLVVGSCAR---G-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--GS 340 (549)
Q Consensus 267 l~~~~~~~~~~~~vg~~~~---g-~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~--~~ 340 (549)
.+. +.. .|...+ . | +.+...+ .+.. ..... .+.+++| +.|.+++. .... .++-...+ ..
T Consensus 148 ~~~-----Q~f--~G~~v~~~~~~f-~~~~~~l-MD~r-~~~~~-~~~~F~Y-~lP~~~~~-alvE--~T~fs~~~~~~~ 212 (374)
T PF05834_consen 148 LGL-----QHF--YGWEVETDEPVF-DPDTATL-MDFR-VPQSA-DGPSFLY-VLPFSEDR-ALVE--ETSFSPRPALPE 212 (374)
T ss_pred ccc-----cee--EEEEEeccCCCC-CCCceEE-EEec-ccCCC-CCceEEE-EEEcCCCe-EEEE--EEEEcCCCCCCH
Confidence 211 111 122111 1 2 1112122 2221 11100 1457777 89998652 1111 11111111 12
Q ss_pred ccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 008915 341 PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLST 420 (549)
Q Consensus 341 ~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~ 420 (549)
..+++.+.+|++.+ ++...++.+.+.|.||.......+...++++.+|+||+++||.||.+|..+++.+..+++
T Consensus 213 ~~~~~~l~~~l~~~------g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~ 286 (374)
T PF05834_consen 213 EELKARLRRYLERL------GIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIAD 286 (374)
T ss_pred HHHHHHHHHHHHHc------CCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHH
Confidence 25566666666542 234566777888999996444556677889999999999999999998888887665555
Q ss_pred HHHH
Q 008915 421 GVYE 424 (549)
Q Consensus 421 ~i~~ 424 (549)
.+.+
T Consensus 287 ~l~~ 290 (374)
T PF05834_consen 287 ALAK 290 (374)
T ss_pred HHhh
Confidence 5443
No 57
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.87 E-value=6.7e-21 Score=196.40 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=159.4
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccC--CCcccc
Q 008915 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFN--PNRCGF 186 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~--~~~i~f 186 (549)
-+|||||||+ |+++|.+|+|+|++|+|+|+...+|.. ...++.-+..+.|+.+|+-+ .+.+..- .+++-.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e------~i~~~gip~~~~v~~ 76 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKE------QIREQGIPLGGRVLI 76 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHH------HHHHhcCcccceeee
Confidence 4799999885 999999999999999999998777654 34566666888898888421 1111111 111110
Q ss_pred cC--Ccc---cccccc--ccceeCHHHHHHHHHHHHHhcCCEEEeCc------eEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 187 EG--KGE---IWVEDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 187 ~~--~~~---l~~~~~--l~~~V~~~~L~~~L~~~a~~~G~~v~~~t------~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
++ +.+ +..++. .-..+.+..+.+.+...+... .+++.+. ....++......+|.+.+|.++++|++
T Consensus 77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dll 155 (420)
T KOG2614|consen 77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLL 155 (420)
T ss_pred ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEE
Confidence 10 111 111111 001233444444444333332 3555553 334444444456678888999999999
Q ss_pred EEccCCChHHHHHhcCC-CCCCceeeEEeEeeeccC-CCce-eeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCARGFK-DNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~-~~~~~~~~~vg~~~~g~~-~~~~-~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
|+|||+.|.||++++.. ..++..|-..+... ++ ++.. ..++. +.. +.-++| |.+.. ....|.
T Consensus 156 igCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~--~~~~~~~~~~vf~----~~~----~~~~~~---~~~~~--~~~~y~ 220 (420)
T KOG2614|consen 156 IGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGF--IPNGIPFGKKVFA----IYG----NGLHSW---PRPGF--HLIAYW 220 (420)
T ss_pred EEcCchHHHHHHHhcccCCcceeEEEEeeeee--ccCCCCcccceec----ccC----CeEEEc---ccCCc--eEEEEE
Confidence 99999999999999765 33444433222211 11 1111 11111 110 122222 11111 122222
Q ss_pred EEc--------cCC-CCC--cccHHHHHHHHHHhCcccccc-cCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 008915 331 FTY--------IDP-QAG--SPKLEELLERYWDLMPEYQGV-TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398 (549)
Q Consensus 331 ~~~--------~~~-~~~--~~~L~~l~~~~~~~lp~~~~~-~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~ 398 (549)
+.- ... .++ .....++.+.|.+.+|++-.. ..+.+. .++. -..|.+....-+...++++|+|||||
T Consensus 221 ~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~-~t~l-~~r~p~~~i~~~~s~~~vvL~GDAaH 298 (420)
T KOG2614|consen 221 FLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIV-RTPL-ADRPPWPLISVKCSPGNVVLLGDAAH 298 (420)
T ss_pred eecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhh-hchh-hhcCCcCeeeeccCCCeEEEeccccc
Confidence 220 010 011 113345555555555555443 111111 1111 11122111111334569999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 008915 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVR 427 (549)
Q Consensus 399 ~v~Pltg~G~g~~lrd~~~La~~i~~Al~ 427 (549)
.+-|.-|||.|.++.|+..|++.+.+|..
T Consensus 299 aM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 299 AMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred ccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999986
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.85 E-value=1.3e-19 Score=191.65 Aligned_cols=272 Identities=15% Similarity=0.190 Sum_probs=156.7
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
||+||||| +|+++|+.|+++ |++|+|+|+.+..+..+.|......+... + ...++.++...+....+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~---~---~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA---Q---HAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh---h---hhhhhhhheEeCCCCEEECcc
Confidence 89999976 599999999987 99999999987655555564432221110 0 001334444445444444432
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhc
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~ 268 (549)
... ..... -+.|++..|.+.|.+++.. + ++.+++|+++ +++++++ ++|++++|++||+|+|.+|+-....+
T Consensus 75 ~~~-~l~~~-Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~~ 145 (370)
T TIGR01789 75 YRR-KLKTA-YRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKGG 145 (370)
T ss_pred hhh-hcCCC-ceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccce
Confidence 111 11111 2468889999999877643 3 7779999988 5566555 68889999999999999985322211
Q ss_pred CCCCCCceeeEEeEeee---ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCC----Ccc
Q 008915 269 SGRKPDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----GSP 341 (549)
Q Consensus 269 ~~~~~~~~~~~vg~~~~---g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~----~~~ 341 (549)
. .+ ..|...+ .+ +.+.. ++.+...-+ +++..++ ++.|.+++ ..+ +.+....+ ...
T Consensus 146 --~----Q~-f~G~~~r~~~p~-~~~~~-~lMD~~~~q---~~g~~F~-Y~lP~~~~----~~l-vE~T~~s~~~~l~~~ 207 (370)
T TIGR01789 146 --F----QV-FLGREMRLQEPH-GLENP-IIMDATVDQ---LAGYRFV-YVLPLGSH----DLL-IEDTYYADDPLLDRN 207 (370)
T ss_pred --e----eE-EEEEEEEEcCCC-CCCcc-EEEeeeccC---CCCceEE-EECcCCCC----eEE-EEEEeccCCCCCCHH
Confidence 1 11 1121111 12 11111 122221111 1123433 36788754 222 22211111 122
Q ss_pred cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC---CCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHH
Q 008915 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD---SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418 (549)
Q Consensus 342 ~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~---~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~L 418 (549)
.+++.+.+|....+ ....++.+...|.+|.... .+.....++++++|||||++||.||+||+.+++++..|
T Consensus 208 ~l~~~l~~~~~~~g------~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l 281 (370)
T TIGR01789 208 ALSQRIDQYARANG------WQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL 281 (370)
T ss_pred HHHHHHHHHHHHhC------CCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence 45555666654431 2233344555678897432 11112356799999999999999999999999998777
Q ss_pred HHHH
Q 008915 419 STGV 422 (549)
Q Consensus 419 a~~i 422 (549)
++.+
T Consensus 282 a~~~ 285 (370)
T TIGR01789 282 AAQP 285 (370)
T ss_pred Hhcc
Confidence 7654
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.83 E-value=3.2e-20 Score=201.05 Aligned_cols=297 Identities=19% Similarity=0.216 Sum_probs=156.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC---CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhh-----hcc---
Q 008915 112 DVIVCGGT-LGIFIATALSFKG---LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKF--- 179 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G---lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~-----~~~--- 179 (549)
|||||||| +|.++|+.|++.+ ++|+|||+...|+..-.....+.....+..+|+.+.+-+.++.. ..|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 79999975 6999999999998 99999999988775433344444455667777643211111110 000
Q ss_pred C---------CCc-------ccc------------c---------------CCc-----cccccccccceeCHHHHHHHH
Q 008915 180 N---------PNR-------CGF------------E---------------GKG-----EIWVEDILNLGVSPAKLIEIV 211 (549)
Q Consensus 180 ~---------~~~-------i~f------------~---------------~~~-----~l~~~~~l~~~V~~~~L~~~L 211 (549)
. .+. +.| . ++. ....+...++.+|+..|++.|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 0 000 000 0 000 000111234679999999999
Q ss_pred HHHHHhcCCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEEccCCChHHHHHh-cCCCC--CCce-eeE-EeEee
Q 008915 212 KKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQI-RSGRK--PDGV-CLV-VGSCA 284 (549)
Q Consensus 212 ~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~ADG~~S~vrrql-~~~~~--~~~~-~~~-vg~~~ 284 (549)
++.+.+.|+++++++ |+++..++++. .|.+++|++++||++|||+|..|.+.++. +.+.. .+.. |-. +....
T Consensus 161 ~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~ 239 (454)
T PF04820_consen 161 RRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQV 239 (454)
T ss_dssp HHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEE
T ss_pred HHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEec
Confidence 999999999999885 88888887764 46677899999999999999999988773 32211 1111 110 00111
Q ss_pred eccCC-CceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcccHHHHHHHHHHhCcccccccCC
Q 008915 285 RGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLD 363 (549)
Q Consensus 285 ~g~~~-~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~ 363 (549)
..... ..+..+. .. ..+|+| .+|..++ ... .+.+.... .+-++.++++.+.++..... .
T Consensus 240 ~~~~~~~~~T~~~----a~------~~GW~W-~IPL~~~---~~~-G~V~s~~~---~s~~~A~~~l~~~l~~~~~~--~ 299 (454)
T PF04820_consen 240 PNEDPPEPYTRST----AF------EAGWIW-YIPLQNR---RGS-GYVYSSDF---ISDDEAEAELLAYLGGSPEA--E 299 (454)
T ss_dssp E-SSCTTSSEEEE----EE------SSEEEE-EEEESSE---EEE-EEEEETTT---SHHHHHHHHHHHHHTCHCTT--S
T ss_pred CcCCCCCCceeEE----ec------CCceEE-EccCCCc---ceE-EEEecccc---CCHHHHHHHHHHhcchhhhc--c
Confidence 10100 0111110 01 358999 7899865 333 22233211 12233334444443332211 1
Q ss_pred ceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhh
Q 008915 364 NLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (549)
Q Consensus 364 ~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~ 443 (549)
. ...+...| ...+...+|+++|||||+++|||.++|+.+++.. ++.|.+++..+..+.. .++.|+
T Consensus 300 ~-~~i~~~~g-------~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~a----a~~l~~~l~~~~~~~~---~~~~Yn 364 (454)
T PF04820_consen 300 P-RHIRFRSG-------RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSA----AEALAEALPDDDFSPA---ALDRYN 364 (454)
T ss_dssp C-EEEE-S-E-------EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHH----HHHHHHTHHCTTCCHH---HHHHHH
T ss_pred h-hhhccccc-------chhhcccCCEEEEcchhhccCccccccHHHHHHH----HHHHHHhcccCCCCHH---HHHHHH
Confidence 1 11111111 1336678999999999999999999999888874 4455666666654433 346677
Q ss_pred h
Q 008915 444 K 444 (549)
Q Consensus 444 ~ 444 (549)
+
T Consensus 365 ~ 365 (454)
T PF04820_consen 365 R 365 (454)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.78 E-value=1.4e-17 Score=191.44 Aligned_cols=294 Identities=16% Similarity=0.113 Sum_probs=159.1
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhcc---CCCcc
Q 008915 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKF---NPNRC 184 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~---~~~~i 184 (549)
+|+||||| +|+++|+.|+++ |++|+|+||++..+.. ....++++.+..|..++ +. +...+...+ ....+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~---~~-~~~~~~~~~~~~~~~~~ 77 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAAD---PV-SAAAIGDAFNHWDDIDV 77 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcC---HH-HHHHHHHhcccCCceEE
Confidence 69999976 588899999998 9999999998865432 23467888777776544 10 111111111 11111
Q ss_pred cccCCcccccccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 185 GFEGKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 185 ~f~~~~~l~~~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+.+ ... ...... +.+++..|++.|.+++.+.|++++.+++++++.. ...++|+||+|||.+|.+
T Consensus 78 ~~~g-~~~-~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 78 HFKG-RRI-RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRI 143 (765)
T ss_pred EECC-EEE-EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHH
Confidence 1211 111 111111 3588999999999999999999999998876531 125799999999999999
Q ss_pred HHHhcCCCCCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEE-EecCCCCCccceEEEEEccCC-----C
Q 008915 264 VKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE-AFPAGSGPLDRTTYMFTYIDP-----Q 337 (549)
Q Consensus 264 rrql~~~~~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~-~fP~~~g~~~~~~~l~~~~~~-----~ 337 (549)
|+++.....+...........-+.... ...+-+...+. ..+++|. .||..++ ...+++...+. .
T Consensus 144 R~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~------~~g~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~ 213 (765)
T PRK08255 144 RTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEET------EHGWFQAHAYRFDDD---TSTFIVETPEEVWRAAG 213 (765)
T ss_pred HHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEec------CCceEEEEEeeeCCC---CcEEEEEcCHHHHHhcC
Confidence 998643211110000000001111100 00000000000 1233331 4666544 23333333210 0
Q ss_pred C---Ccc-cHHHHHHHHHHhCcccccccCCceeE-eeeeeeeeccccCCCCCccCCc----EEEeCCCCCCCCCCCCCch
Q 008915 338 A---GSP-KLEELLERYWDLMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNR----ILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 338 ~---~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~-~r~~~g~~P~~~~~~~~~~~~r----vlLVGDAA~~v~Pltg~G~ 408 (549)
. ... ..+.+.+.|-...+....+ ..... ....+..++. ....++..+| ++|+|||||.++|..|||.
T Consensus 214 ~~~~~~~~~~~~l~~~f~~~~~~~~li--~~~~~~~~~~w~~~~~--~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~ 289 (765)
T PRK08255 214 LDEMSQEESIAFCEKLFADYLDGHPLM--SNASHLRGSAWINFPR--VVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGT 289 (765)
T ss_pred CccCCHHHHHHHHHHHhHHhcCCCccc--ccccccccceeeecce--eccCCCccCCCcccEEEEEcCcccCCCCcchhH
Confidence 0 011 2223333333333322111 11100 0000111111 1223566778 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhh
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~ 443 (549)
|++++|+..|++.|.... . .....|+.|+
T Consensus 290 ~~aieDa~~La~~L~~~~--~----~~~~al~~ye 318 (765)
T PRK08255 290 KLALEDAIELARCLHEHP--G----DLPAALAAYE 318 (765)
T ss_pred HHHHHHHHHHHHHHHHcc--c----cHHHHHHHHH
Confidence 999999999999886531 1 1234567888
No 61
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.77 E-value=8.7e-17 Score=163.46 Aligned_cols=297 Identities=18% Similarity=0.203 Sum_probs=166.9
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCccccCCHHHHHHHHHcCCCCcc-cchhhhhhccCCCc
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWNISRKELLELVESGILVED-DIDEATATKFNPNR 183 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~~IS~~~l~~L~~lGl~~~~-eie~~i~~~~~~~~ 183 (549)
.+.++||||||+| +|+++|++|+|.|.||.||||.- .|.+.-..-+.++....|.+||+-+.. +|+...+..|
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy---- 117 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGY---- 117 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeee----
Confidence 4557999999977 59999999999999999999974 232221223566777889999986431 2333323222
Q ss_pred ccccCCcccccc--------ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc--CCc--EEEc
Q 008915 184 CGFEGKGEIWVE--------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSS 250 (549)
Q Consensus 184 i~f~~~~~l~~~--------~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--dG~--~i~A 250 (549)
.-|.++++...+ +.-+..+.+.+|.+.|++++.+....-+++-+|+++..+++-++ |+.+ .|+ +..|
T Consensus 118 ~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A 197 (509)
T KOG1298|consen 118 AIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA 197 (509)
T ss_pred EEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence 112222221111 12245678889999999999887665556667888866665222 3333 333 7899
Q ss_pred CEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec--cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceE
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~ 328 (549)
.|-|.|||-.|.+||.+.-.....-....+|.+..+ .+....++++.+. |.. +- .||.+.. +. .
T Consensus 198 pLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~-psp---------il-~Y~ISSt--Ev-R 263 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSK-PSP---------IL-VYQISST--EV-R 263 (509)
T ss_pred ceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecC-CCc---------EE-EEEecch--he-E
Confidence 999999999999999986432211001123333322 2233345665542 211 11 4565543 12 2
Q ss_pred EEEEccCC-CCC--cccHHHHHHHHH-HhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 008915 329 YMFTYIDP-QAG--SPKLEELLERYW-DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (549)
Q Consensus 329 ~l~~~~~~-~~~--~~~L~~l~~~~~-~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plt 404 (549)
.++.+... -+. +..+.+.+.+-. -..|+--+-.+-.. +........|..+..+......+++++|||-.+-||++
T Consensus 264 cl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~a-v~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPlt 342 (509)
T KOG1298|consen 264 CLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEA-VDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLT 342 (509)
T ss_pred EEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHH-hhccchhcCccccCCCCcCCCCceEEEcccccccCCcc
Confidence 23333220 010 101222221111 11111000000000 00001123455544444556789999999999999999
Q ss_pred CCchhhHHHHHHHHHHHH
Q 008915 405 FGGFGSLTRHLGRLSTGV 422 (549)
Q Consensus 405 g~G~g~~lrd~~~La~~i 422 (549)
|+|+-.++-|+..|-..|
T Consensus 343 ggGMtV~l~Di~lLr~ll 360 (509)
T KOG1298|consen 343 GGGMTVALSDIVLLRRLL 360 (509)
T ss_pred CCceEeehhHHHHHHHHh
Confidence 999999998877666554
No 62
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.38 E-value=1.1e-11 Score=124.88 Aligned_cols=133 Identities=24% Similarity=0.318 Sum_probs=92.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccc---------cCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~---------~IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+|||+||||| +|+++|+.|++.|++|+|+||...++.. .| .+.......|.++|+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg-~~~gg~~~~~~~v~~~~~~~l~~~gv~------------- 90 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG-MWGGGMLFNKIVVQEEADEILDEFGIR------------- 90 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCccccccccchHHHHHHHHHCCCC-------------
Confidence 6999999965 6999999999999999999998765421 11 1111122233333321
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EE---EEEEc---------CCc
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGK 246 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv---~V~~~---------dG~ 246 (549)
|... .+. .+.+++..+...|.+++.+.|++++.+++|+++..+++ .+ ++... +..
T Consensus 91 ------~~~~----~~g--~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~ 158 (257)
T PRK04176 91 ------YKEV----EDG--LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPL 158 (257)
T ss_pred ------ceee----cCc--ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcE
Confidence 1000 000 13468889999999999999999999999999987666 22 22210 124
Q ss_pred EEEcCEEEEccCCChHHHHHhc
Q 008915 247 ILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrql~ 268 (549)
+++||+||+|+|++|.+.+.+.
T Consensus 159 ~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 159 TIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred EEEcCEEEEEeCCCcHHHHHHH
Confidence 7999999999999999998763
No 63
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.34 E-value=2.4e-11 Score=122.04 Aligned_cols=132 Identities=27% Similarity=0.430 Sum_probs=90.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+|||+||||| +|+++|+.|+++|++|+||||+..++.. .|. +.....+.+.++|+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi-------------- 85 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGI-------------- 85 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCC--------------
Confidence 6999999965 6999999999999999999999876522 121 00011112222221
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EE-EEEc-----------CC
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EG 245 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~-V~~~-----------dG 245 (549)
.+.... . ..+..++..+.+.|.+++.+.|++++.+++++++..++++ +. |.++ +.
T Consensus 86 -----~~~~~~-----~-g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~ 154 (254)
T TIGR00292 86 -----RYEDEG-----D-GYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDP 154 (254)
T ss_pred -----Ceeecc-----C-ceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCC
Confidence 111000 0 0123577789999999999999999999999999887762 21 2221 12
Q ss_pred cEEEcCEEEEccCCChHHHHHh
Q 008915 246 KILSSHLIIDAMGNFSPVVKQI 267 (549)
Q Consensus 246 ~~i~ArlVI~ADG~~S~vrrql 267 (549)
.+++|++||+|+|+.|++.+.+
T Consensus 155 ~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 155 LTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred EEEEcCEEEEeecCCchHHHHH
Confidence 3799999999999999998876
No 64
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.28 E-value=4.6e-10 Score=116.37 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=57.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChHH-HHHhc
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV-VKQIR 268 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~v-rrql~ 268 (549)
..+++..+.+.|.+.+++.|++++.+++|+++..++++++ |.+++|+ ++|+.||.|.|.+|.- .+.++
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~ 211 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLG 211 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTT
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccc
Confidence 4589999999999999999999999999999999999998 9998887 9999999999999874 44443
No 65
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.26 E-value=2.8e-11 Score=116.38 Aligned_cols=131 Identities=26% Similarity=0.374 Sum_probs=83.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+|||+|||| ++|+++|..||++|+||+++||+..++.. .|. +.......|+++|+-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg-~~~Gg~lf~~iVVq~~a~~iL~elgi~------------- 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG-MWGGGMLFNKIVVQEEADEILDELGIP------------- 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT-TTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc-ccccccccchhhhhhhHHHHHHhCCce-------------
Confidence 699999995 56999999999999999999998766521 121 111122333333321
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CE---EEEEEc---------CCc
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA---AVLLLA---------EGK 246 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dg---v~V~~~---------dG~ 246 (549)
+... .+ .-+..|...+-..|..++.++|++++..+.|+++...+ +. +++... |--
T Consensus 83 ------y~~~-----~~-g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl 150 (230)
T PF01946_consen 83 ------YEEY-----GD-GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL 150 (230)
T ss_dssp -------EE------SS-EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred ------eEEe-----CC-eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence 1100 01 11456788888999999999999999999999999887 43 333332 123
Q ss_pred EEEcCEEEEccCCChHHHHH
Q 008915 247 ILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrq 266 (549)
+++|++||||+|+.+++.+.
T Consensus 151 ~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 151 TIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp EEEESEEEE---SSSSSTSH
T ss_pred eEEEeEEEeCCCCchHHHHH
Confidence 89999999999999876543
No 66
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.25 E-value=2.3e-10 Score=114.52 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=105.0
Q ss_pred EcCEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec--cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 249 ~ArlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
.|+++|.|||..|.+|+++. ..++.-....+|...++ .+....++++... .+.++ .|+.+.. -
T Consensus 1 ~A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil-~YqI~~~---e 65 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVILGK----------PGPIL-LYQISSN---E 65 (276)
T ss_pred CCCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEE-EEEcCCC---c
Confidence 37899999999999999987 33333333344544432 2344567776643 12344 6777654 2
Q ss_pred eEEEEEccCC-CCC--cccHHHHHHHH-HHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 008915 327 TTYMFTYIDP-QAG--SPKLEELLERY-WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 327 ~~~l~~~~~~-~~~--~~~L~~l~~~~-~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (549)
+..++.+... .+. +.++++.+.+. .-.+|+--+..+... +........|.....+.....++++++|||+++.||
T Consensus 66 tR~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~a-l~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 66 TRVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKA-LEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHP 144 (276)
T ss_pred eEEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHH-hccCCcceecccccCCCCCCCCCEEEEehhhcCcCC
Confidence 4445544432 111 22555555433 233443211111000 011112346666655556677999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCC-h-hhhHhhhhhh
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVD-S-YSLSLLNPYM 443 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~-~-~~l~~L~~Y~ 443 (549)
+||||+..++.|+..|++.|... .+++ . .-.+.++.|.
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~---~dl~d~~~v~~~l~~f~ 184 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPI---PDLSDTKAVLEALKKFH 184 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHH
Confidence 99999999999999999988776 2222 2 2244567776
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.8e-10 Score=110.32 Aligned_cols=132 Identities=27% Similarity=0.371 Sum_probs=92.5
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+-||||||+ |.|+++|+.||++|+||+++||+-.++- ..|. +-...-+.|+++|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GGmlf~~iVv~~~a~~iL~e~gI-------------- 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGGMLFNKIVVREEADEILDEFGI-------------- 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccccccceeeecchHHHHHHHhCC--------------
Confidence 579999995 5699999999999999999999876542 1121 10111223333332
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-E---EEEEEc---------CCc
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-A---AVLLLA---------EGK 246 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-g---v~V~~~---------dG~ 246 (549)
.+...+ +. -++.|+..+-..|..++.++|++|+..+.|+++...++ + +++... |--
T Consensus 95 -----~ye~~e-----~g-~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl 163 (262)
T COG1635 95 -----RYEEEE-----DG-YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPL 163 (262)
T ss_pred -----cceecC-----Cc-eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcc
Confidence 111000 10 14567788888999999999999999999999988777 3 333321 234
Q ss_pred EEEcCEEEEccCCChHHHHHh
Q 008915 247 ILSSHLIIDAMGNFSPVVKQI 267 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrql 267 (549)
+++|++||||+|+.-++.+-+
T Consensus 164 ~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 164 TIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred eeeEEEEEeCCCCchHHHHHH
Confidence 899999999999999888655
No 68
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.24 E-value=7.1e-09 Score=109.63 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=59.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC-hHHHHHhcCCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF-SPVVKQIRSGR 271 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~-S~vrrql~~~~ 271 (549)
..+++..+.+.|.+++.+.|++++.+++|+++..+++.+.|.++++ +++|+.||.|.|.. |.+++.++...
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC
Confidence 4579999999999999989999999999999998888888877555 79999888888876 56777776543
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.24 E-value=6.1e-09 Score=114.85 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=56.2
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC----cEEEcCEEEEccCCChH-HHHHh
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSP-VVKQI 267 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG----~~i~ArlVI~ADG~~S~-vrrql 267 (549)
.+++..+...+.+.+.+.|++++..++|+++..+++.+.|++.++ .+++|+.||.|+|.+|. +++++
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 478899999999999999999999999999988877777776554 26999999999999986 54433
No 70
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.21 E-value=1.8e-10 Score=119.47 Aligned_cols=157 Identities=23% Similarity=0.280 Sum_probs=101.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-------ccccCCHHHH--HHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKEL--LELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~~~IS~~~l--~~L~~lGl~~~~eie~~i~~~~ 179 (549)
.+|||||||| +|+++|..++++|.+|+|||+.+-++++ |+ |++..+. +.+.+.+=-. .-+...+ .+|
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrC-N~Tn~~~~~~~ls~~p~~~-~fl~sal-~~f 79 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRC-NFTNSEAPDEFLSRNPGNG-HFLKSAL-ARF 79 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCc-cccccccHHHHHHhCCCcc-hHHHHHH-HhC
Confidence 6999999975 6999999999999999999999876643 22 4432211 1122211000 0001110 112
Q ss_pred CCCc-ccccC--Cccccccccccc----eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 180 NPNR-CGFEG--KGEIWVEDILNL----GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 180 ~~~~-i~f~~--~~~l~~~~~l~~----~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
.+.. +.|-. +..++.. ..+. .-....+.++|..++++.|++++.+++|.++..++++..|.+++|++++|+-
T Consensus 80 t~~d~i~~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CHHHHHHHHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 1110 01100 1111111 1121 1345678899999999999999999999999999889999998998999999
Q ss_pred EEEccCCCh-----------HHHHHhcCC
Q 008915 253 IIDAMGNFS-----------PVVKQIRSG 270 (549)
Q Consensus 253 VI~ADG~~S-----------~vrrql~~~ 270 (549)
||-|+|..| ++++|+|..
T Consensus 159 lilAtGG~S~P~lGstg~gy~iA~~~G~~ 187 (408)
T COG2081 159 LILATGGKSWPKLGSTGFGYPIARQFGHT 187 (408)
T ss_pred EEEecCCcCCCCCCCCchhhHHHHHcCCc
Confidence 999999776 567777654
No 71
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.18 E-value=1.1e-08 Score=113.07 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=54.5
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---Cc--EEEcCEEEEccCCChH-HHHH
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQ 266 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~--~i~ArlVI~ADG~~S~-vrrq 266 (549)
.+|+..|...+.+.+.+.|++++.+++|+++..+++.+.|++.+ |+ +++|+.||.|+|.+|. +.++
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~ 222 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDD 222 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhh
Confidence 37888888888888889999999999999998877777776653 43 7999999999999986 4443
No 72
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.09 E-value=1.1e-08 Score=105.74 Aligned_cols=304 Identities=20% Similarity=0.222 Sum_probs=162.3
Q ss_pred CCcccEEEEcc-hHHHHHHHHHH------hCCCcEEEEccCCCCCCCcc--ccCCHHHHHHHHHcCCCCc--ccchhhhh
Q 008915 108 VGTFDVIVCGG-TLGIFIATALS------FKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVE--DDIDEATA 176 (549)
Q Consensus 108 ~~~yDVIIVGG-g~G~~~Aa~LA------r~GlrVlLIEr~~~~~~~r~--~~IS~~~l~~L~~lGl~~~--~eie~~i~ 176 (549)
.+.|||+|||| |+|+++|+.|. .+-+||+|+||+..++.+-- --|-+..+.+|. -=|.+ .++...+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~--P~wke~~apl~t~vT 151 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL--PDWKEDGAPLNTPVT 151 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC--cchhhcCCccccccc
Confidence 34799999996 57999998663 23789999999988764310 012223333331 01111 11221111
Q ss_pred hccCCCccccc-CCcc------ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--cC---
Q 008915 177 TKFNPNRCGFE-GKGE------IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AE--- 244 (549)
Q Consensus 177 ~~~~~~~i~f~-~~~~------l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~d--- 244 (549)
+ ..+.|- ++.. ....+.-||+|+-..|.++|.++|.+.|++|+.+..+.++..++|+.+..+ +|
T Consensus 152 ~----d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI 227 (621)
T KOG2415|consen 152 S----DKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGI 227 (621)
T ss_pred c----cceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccc
Confidence 1 111111 0111 122233478899999999999999999999999999999988888755433 22
Q ss_pred ------------CcEEEcCEEEEccCCChHHHHHhcCCCCCCcee--eEEeE----eeeccC--CCceeeeeecCC-ccc
Q 008915 245 ------------GKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--LVVGS----CARGFK--DNSTSDVIYSSS-SVK 303 (549)
Q Consensus 245 ------------G~~i~ArlVI~ADG~~S~vrrql~~~~~~~~~~--~~vg~----~~~g~~--~~~~~ei~~~~~-~~~ 303 (549)
|-++.|+.-|-|.|-+--+.+|+-.....+.-| .+.|. +++ ++ +...+++.-..+ |+.
T Consensus 228 ~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWe-i~~~~~~pG~v~HT~GwPl~ 306 (621)
T KOG2415|consen 228 SKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWE-IDPENHNPGEVAHTLGWPLD 306 (621)
T ss_pred cCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEe-cChhhcCCcceeeeccCccc
Confidence 237999999999999888888753221111000 01111 111 11 112222211111 111
Q ss_pred ccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcc--cHHHHHHHHHHhCcccccccCCceeEeeeeeeeecc---c
Q 008915 304 KVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP--KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPT---Y 378 (549)
Q Consensus 304 ~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~--~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~---~ 378 (549)
+ +...+-| .|-..+. ..+..+.. ...-.+| +.-+.|+++ ...|.++.+ ++.-+ +..+|...+ .
T Consensus 307 ~--~tYGGsF--lYh~~d~---~VavGlVV-gLdY~NP~lsP~~EFQk~-K~hP~i~~v-leGgk--~i~YgARaLNEGG 374 (621)
T KOG2415|consen 307 N--DTYGGSF--LYHFNDP---LVAVGLVV-GLDYKNPYLSPYKEFQKM-KHHPSISKV-LEGGK--RIAYGARALNEGG 374 (621)
T ss_pred C--CccCcee--EEEcCCC---eEEEEEEE-EecCCCCCCCHHHHHHHh-hcCcchhhh-hcCcc--eeeehhhhhccCC
Confidence 1 0011112 1223322 22221111 1111223 223333333 456777765 33322 222222111 1
Q ss_pred cCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCC
Q 008915 379 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF 430 (549)
Q Consensus 379 ~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~ 430 (549)
+++-.+..+++=+|||=+|++++---=-|-..+|......||.|-+|++...
T Consensus 375 fQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~ 426 (621)
T KOG2415|consen 375 FQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLP 426 (621)
T ss_pred cccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCc
Confidence 2233366778889999999998755556777777776667888999997654
No 73
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.07 E-value=2.9e-08 Score=106.28 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=52.0
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEE-EEEEcCCcEEEcC-EEEEccCCChHHHHHhcCC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAEGKILSSH-LIIDAMGNFSPVVKQIRSG 270 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv-~V~~~dG~~i~Ar-lVI~ADG~~S~vrrql~~~ 270 (549)
.+++..+...|.+.+.+.|++++++++|+++... ++.+ .|.+++| +++|+ +||+|+|..|.+++.++..
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~ 250 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR 250 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC
Confidence 4678888888899999999999999999999764 3443 3666566 68887 5566677667777766554
No 74
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.04 E-value=5.9e-09 Score=111.14 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=103.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCCCCc----------cccCCHH-------------HHHHHHHc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQ----------EWNISRK-------------ELLELVES 163 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~~~r----------~~~IS~~-------------~l~~L~~l 163 (549)
+|||+||||| +|+++|..|++.+ ++|+||||...++... ..+-.++ ..+..+++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 6999999987 5999999999998 9999999998754210 0100111 12223333
Q ss_pred CC-----------CCcccchhhhhhcc-----CCCc-ccccCC------cc---------ccccccccceeCHHHHHHHH
Q 008915 164 GI-----------LVEDDIDEATATKF-----NPNR-CGFEGK------GE---------IWVEDILNLGVSPAKLIEIV 211 (549)
Q Consensus 164 Gl-----------~~~~eie~~i~~~~-----~~~~-i~f~~~------~~---------l~~~~~l~~~V~~~~L~~~L 211 (549)
++ +.+++++.+- ..| ++-. +...+. .+ ++.+. +..|++..+-..|
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~-~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~--~giV~~~~~t~~l 159 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLE-KLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPS--GGIVDPGELTRAL 159 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHH-HHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCC--CceEcHHHHHHHH
Confidence 31 1112221111 111 1111 111110 11 11111 3458999999999
Q ss_pred HHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcE-EEcCEEEEccCCChH-HHHHhcCCC
Q 008915 212 KKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSP-VVKQIRSGR 271 (549)
Q Consensus 212 ~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~-i~ArlVI~ADG~~S~-vrrql~~~~ 271 (549)
.+.+.+.|+++..+++|+++..++|+ ..+.+.+|++ ++||.||.|-|..|- +++..+.+.
T Consensus 160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 99999999999999999999999994 5666777766 999999999998875 777776654
No 75
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.03 E-value=8.7e-09 Score=108.77 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=54.0
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+++..+...+.+.+.+.|++++++++|+++..+++++.|.+++| +++|+.||.|+|..|.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 478888888888888888999999999999998888888887666 7999999999999865
No 76
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.02 E-value=2.1e-09 Score=114.97 Aligned_cols=148 Identities=24% Similarity=0.322 Sum_probs=74.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-------ccccCCHHHH--HHH-HHcCCCCcccchhhhhhcc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKEL--LEL-VESGILVEDDIDEATATKF 179 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~~~IS~~~l--~~L-~~lGl~~~~eie~~i~~~~ 179 (549)
|||+||||| +|+++|+.+|+.|.+|+|+||+..++.+ |+ |++.... ..+ ...+- ...-+...+ ..|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrC-N~tn~~~~~~~~~~~~~~-~~~f~~~~l-~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRC-NLTNLNIDPSEFLSGYGR-NPKFLKSAL-KRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT--EEEETTSSGGGEECS-TB-TTTCTHHHH-HHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCc-cccccccchhhHhhhccc-chHHHHHHH-hcC
Confidence 899999975 5999999999999999999999876531 11 2221000 000 00000 000000000 011
Q ss_pred CCCc-ccccC--Cccccc-cc--cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCE
Q 008915 180 NPNR-CGFEG--KGEIWV-ED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL 252 (549)
Q Consensus 180 ~~~~-i~f~~--~~~l~~-~~--~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~Arl 252 (549)
++.. +.|.. +-+... ++ ++...-....+.++|.+.+.+.|++++.+++|+++..++++ +.|.++++.++.||-
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000 00000 000000 00 01111234567889999999999999999999999998888 778886777999999
Q ss_pred EEEccCCCh
Q 008915 253 IIDAMGNFS 261 (549)
Q Consensus 253 VI~ADG~~S 261 (549)
||-|+|..|
T Consensus 158 vILAtGG~S 166 (409)
T PF03486_consen 158 VILATGGKS 166 (409)
T ss_dssp EEE----SS
T ss_pred EEEecCCCC
Confidence 999999876
No 77
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.00 E-value=5.6e-09 Score=115.68 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=88.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCccc----cCCHH-HHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW----NISRK-ELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~----~IS~~-~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
+||||||||| +|+.+|+++|+.|.+|+|||++. ..+...+. .+..+ -+..+..+|-.....++... ..+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~g-iq~r-- 80 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTG-IQFR-- 80 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhcc-Ccee--
Confidence 6999999976 68899999999999999999874 22211110 11111 12334444421000001100 0010
Q ss_pred cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCC
Q 008915 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 183 ~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~ 260 (549)
......+...+.+ ...+|+..+.+.+.+.+.+. |++++ .++|+++..+++.+. |.+.+|..+.|+.||+|+|.+
T Consensus 81 ~ln~skGpAV~s~---RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 81 MLNTSKGPAVRAL---RAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ecccCCCCceeCc---HHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000001112221 13588988999999888876 56775 567899887777655 777788899999999999976
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
+
T Consensus 157 L 157 (618)
T PRK05192 157 L 157 (618)
T ss_pred h
Confidence 5
No 78
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.00 E-value=1.7e-08 Score=107.79 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=60.1
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+++| +++|+.||.|+|.+|+ +++.++..
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4578999999999999999999999999999988888888887666 7999999999999995 66666643
No 79
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.96 E-value=3.2e-08 Score=108.51 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=56.5
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEc---CC--cEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~---dG--~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..||+..+.+.|.+.+++.|++++++++|+++..+++ ++.|++. +| .+++|+.||.|.|.+|. +++.++..
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 3589999999999999999999999999999988654 5666542 23 26999999777777664 77777765
No 80
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.95 E-value=1.2e-08 Score=112.02 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCE-EEEEEc---CCc--EEEcCEEEEccCCCh-HHHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNFS-PVVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dg-v~V~~~---dG~--~i~ArlVI~ADG~~S-~vrrql~~~ 270 (549)
..||+..+.+.|.+.+++.| ++++++++|+++..++++ +.|.+. +|+ +++|+.||.|.|.+| .+++.+++.
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 46899999999999998887 699999999999886665 666543 353 699998877777665 477777665
No 81
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.93 E-value=2.3e-10 Score=123.56 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=29.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcc--c--cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQE--W--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~--~--~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
|||||||| +|+++|+++|+.|.||+||||....+.... . .+..........-|++ +++...-...+....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~-----~e~~~~~~~~~~~~~ 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIF-----REFLNRLRARGGYPQ 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHH-----HHHHHST--------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHH-----HHHHHHHhhhccccc
Confidence 89999976 588899999999999999999998763210 0 0000000000000110 011100000000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc--CC-cEEEcCEEEEccCCChH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EG-KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--dG-~~i~ArlVI~ADG~~S~ 262 (549)
. ...-+. -.+.+++..+...|.+.+.++|++++.++.|+++..+++.++ |.+. +| .+++|+++|||+|.. -
T Consensus 76 ~-~~~~~~---~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g-~ 150 (428)
T PF12831_consen 76 E-DRYGWV---SNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDG-D 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 0 000000 013567778888888888888999999999999998775432 3333 34 489999999999964 4
Q ss_pred HHHHhcCC
Q 008915 263 VVKQIRSG 270 (549)
Q Consensus 263 vrrql~~~ 270 (549)
++...|.+
T Consensus 151 l~~~aG~~ 158 (428)
T PF12831_consen 151 LAALAGAP 158 (428)
T ss_dssp --------
T ss_pred cccccccc
Confidence 55555543
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.91 E-value=1.6e-08 Score=115.24 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=55.3
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+++..+.+.|.+.+.+ |++++.+++|+++..++++++|.+++|..++|+.||.|+|..|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 47899999999999988 99999999999999888888888877777899999999999985
No 83
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=3.3e-08 Score=105.93 Aligned_cols=67 Identities=19% Similarity=0.100 Sum_probs=55.5
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-----cEEEcCEEEEccCCChH-HHHHhc
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-----~~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
+++..+...|.+.+.+.|++++++++|+++..+++++++.+.++ .+++|+.||.|.|.+|. +.+.++
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 67888888999999999999999999999988888877765432 37999999999999985 555554
No 84
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.87 E-value=8e-08 Score=105.44 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=58.9
Q ss_pred ceeCHHHHHHHHHHHHHh----cC--CEEEeCceEEEEEEE-CCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcCCC
Q 008915 200 LGVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGR 271 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~----~G--~~v~~~t~v~~i~~~-~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~~ 271 (549)
..||+..+.+.|.+.+++ .| ++++++++|+++..+ ++.+.|++++| +++|+.||-|.|.+|. +++.++.+.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~ 284 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL 284 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence 358999999999999988 77 678999999999887 44577887666 6999999999999985 777777643
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.86 E-value=8.3e-07 Score=95.17 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=54.7
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH-HHHHhc
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
.+++..+.+.|.+.+.+.|++++++++|++++.+++++. |+++ +.+++|+.||.|.|.+|. +.+.++
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 468888999999999999999999999999988777754 5554 447999999999999985 444443
No 86
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.86 E-value=5.1e-08 Score=108.64 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=55.3
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CC--cEEEcCEEEEccCCChH-HHHHhc
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG--~~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
..||+..|...+...+.+.|++++.+++|+++..+++.++ |++. ++ .+|+|+.||-|.|.+|. +.+.++
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence 3589999999999999999999999999999988776543 4432 23 37999999999999986 555444
No 87
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.85 E-value=4.1e-08 Score=103.61 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=82.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEE-ccCCCCCCCcc----ccCCHHH-HHHHHHcCCCCcccchhhhhhccCCCcc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIV-ERNTLKGREQE----WNISRKE-LLELVESGILVEDDIDEATATKFNPNRC 184 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLI-Er~~~~~~~r~----~~IS~~~-l~~L~~lGl~~~~eie~~i~~~~~~~~i 184 (549)
|||||||| +|+.+|+++|+.|.+|+|+ ++........+ -.+..+. ..+++.+|-+ +-.+ .+....++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~----m~~~--aD~~~i~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL----MGRA--ADETGIHF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S----HHHH--HHHHEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH----HHHH--HhHhhhhh
Confidence 89999987 5999999999999999999 33322221111 1233332 2455556522 1111 11101111
Q ss_pred cccC--Cc-cccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCC
Q 008915 185 GFEG--KG-EIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 185 ~f~~--~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~ 259 (549)
...+ +. ..+ .+-..+|+..+.+.+.+.+.+.+. +++ .++|+++..+++.+. |.+.+|.++.||.||.|+|.
T Consensus 75 ~~lN~skGpav~---a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 75 RMLNRSKGPAVH---ALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEESTTS-GGCT---EEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hcccccCCCCcc---chHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 1111 11 111 122479999999999999988655 665 678999998887665 77778999999999999999
No 88
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.84 E-value=7.7e-07 Score=100.68 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=54.0
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC--CEEE-EEE---cCCc--EEEcCEEEEccCCChH-HHHHhc
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv~-V~~---~dG~--~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
.+|+..+...|.+.+.+.|++++.+++|+++..++ +.+. |.+ .+++ +++|+.||.|.|.+|. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 47999999999999999999999999999998763 4332 333 2343 6899999999999987 665554
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.84 E-value=1.5e-08 Score=97.53 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=76.1
Q ss_pred EEEcc-hHHHHHHHHHHhCCCc-EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC---cccccC
Q 008915 114 IVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN---RCGFEG 188 (549)
Q Consensus 114 IIVGG-g~G~~~Aa~LAr~Glr-VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~---~i~f~~ 188 (549)
+|||| +.|+++|+.|.++|++ |+||||+..++. .|.-... ...+.+..... ..+... .+.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg--~w~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~ 68 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG--VWRRYYS------YTRLHSPSFFS----SDFGLPDFESFSFDD 68 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT--HHHCH-T------TTT-BSSSCCT----GGSS--CCCHSCHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC--eeEEeCC------CCccccCcccc----ccccCCccccccccc
Confidence 68885 5699999999999999 999999976552 2321000 01111100000 000000 000000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+-+ .....-.....+.+.|.+.+.+.+.+++.+++|+++..+++++.|+++++++++|+.||.|+|..|.
T Consensus 69 -~~~~--~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 69 -SPEW--RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp -HHHH--HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred -CCCC--CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 0000 0001124556677888888888888999999999999999999999988888999999999998653
No 90
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.82 E-value=4.3e-08 Score=106.99 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=52.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++.++...|.+.+++.|++++++++|++++. ++.+.|++.+| +++|+.||.|.|.+|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 4589999999999999999999999999999975 45566777666 6999999999998864
No 91
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.80 E-value=1.2e-06 Score=95.68 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=55.6
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---Cc--EEEcCEEEEccCCChH-HHHHh
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQI 267 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~--~i~ArlVI~ADG~~S~-vrrql 267 (549)
+.+|..+|.-.....+.+.|++++..++|+++..+++-+-|.+.| |+ +++|+.||-|.|.++- +++..
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 568888898888888889999999999999999988833455544 33 6999999999999997 44444
No 92
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.78 E-value=2.9e-07 Score=100.30 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=110.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHHH-HHhcCCCC--CCc
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV-KQIRSGRK--PDG 275 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~vr-rql~~~~~--~~~ 275 (549)
-.+||.-+-++|...|++.|+.|.+++.|+++....+. +-|++..|. |+|..+|.|.|.+.... +..+...+ +-+
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~ 260 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVPMH 260 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhhhhcCCcccceeee
Confidence 45899999999999999999999999999999876654 457766664 99999999999987533 33332222 111
Q ss_pred eeeEEeEeeeccCCCce-------eeeeec-------CCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcc
Q 008915 276 VCLVVGSCARGFKDNST-------SDVIYS-------SSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP 341 (549)
Q Consensus 276 ~~~~vg~~~~g~~~~~~-------~ei~~~-------~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~ 341 (549)
..-++....+|...... +.+++. .+..+. ..++|+.-|... ...++ +++-.
T Consensus 261 H~YvvT~~IeGi~s~t~p~irD~DgSvylR~~~~gil~GGyE~-----n~i~~egv~~~~-----~~~lq-----E~DWd 325 (856)
T KOG2844|consen 261 HAYVVTSRIEGVSSLTRPNIRDLDGSVYLRQQGDGILFGGYES-----NPIFTEGVPPGF-----ATGLQ-----EPDWD 325 (856)
T ss_pred eeEEEecccCCccCCCccceecccceEEEEecCCceecccccc-----CceeccccCCcc-----ccccc-----cccHh
Confidence 11122222222211000 001110 011110 112222111110 00111 12222
Q ss_pred cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchh-hHHHHHHHHHH
Q 008915 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG-SLTRHLGRLST 420 (549)
Q Consensus 342 ~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g-~~lrd~~~La~ 420 (549)
-.....+....+.|.++++++.++ +. .+..+.-|..-++|.+-....=...+||| .++...+=+++
T Consensus 326 ~F~~hlesai~r~P~l~k~~i~~~-----v~--------gpe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk 392 (856)
T KOG2844|consen 326 HFEPHLEAAIERVPVLEKAGIKSL-----VN--------GPETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGK 392 (856)
T ss_pred hhHHHHHHHHHhCchhhhcCccce-----ec--------CccccCCccccccCCCccccceEEeecCCccceeccCchhH
Confidence 345666777788898877653332 11 12223335556677777666666677777 55555555566
Q ss_pred HHHHHHhCCC
Q 008915 421 GVYEAVRGDF 430 (549)
Q Consensus 421 ~i~~Al~~g~ 430 (549)
.+.+.+-+|.
T Consensus 393 ~la~wi~~g~ 402 (856)
T KOG2844|consen 393 YLAEWIIHGQ 402 (856)
T ss_pred HHHHHhhcCC
Confidence 6666666665
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.76 E-value=4.2e-07 Score=99.58 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=56.4
Q ss_pred ceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEE-CCEEEEEE---cCCc--EEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~-~dgv~V~~---~dG~--~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..||+..+.+.|.+.+.+ .|++++++++|+++... +++++|.+ .+++ +++|+.||-|.|.+|. +++.++..
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 458999999999998865 48999999999999877 66777763 3342 6999999988888885 77777654
No 94
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.74 E-value=1.4e-07 Score=96.02 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=79.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
|||+||||| +|+++|..|++.|++|+|||+....+. |... . .+ ..+ +. +.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-~~---~~-- 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ---LTTT----------T-----EV-----ENY-PG---FP-- 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc---eeec----------c-----cc-----ccc-CC---CC--
Confidence 799999976 689999999999999999998863221 1000 0 00 001 00 00
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..+....+...+.+.+.+.|++++. ++|++++.+++.+.|.+++++++++|.||.|+|...
T Consensus 52 ----------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 52 ----------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred ----------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 0122345566777777788999988 899999888788888887788999999999999864
No 95
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.72 E-value=1.5e-07 Score=95.48 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=94.6
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCCC----ccccCCHHH-------------HHHHHHc-------
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE----QEWNISRKE-------------LLELVES------- 163 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~~----r~~~IS~~~-------------l~~L~~l------- 163 (549)
..+||||||+|+ |+++|+.||++|.+++|+|+.++|-.. ..-.|-+.+ ++.-.++
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 369999999876 999999999999999999999887421 111111111 1111100
Q ss_pred -----CCC---Cc--ccchhhhh------------------hccCCCcccccCCccccccccccceeCHHHHHHHHHHHH
Q 008915 164 -----GIL---VE--DDIDEATA------------------TKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRF 215 (549)
Q Consensus 164 -----Gl~---~~--~eie~~i~------------------~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a 215 (549)
+++ +. .+++++.. ..| |..+.+..+ ....-+..+-.+.+.+-.++|..++
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~f-P~~~~l~d~-~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRF-PSNIPLPDG-WQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhC-CCCccCCcc-hhhcccccccEeeHHHHHHHHHHHH
Confidence 100 00 01111110 111 112333221 1111122344577888889999999
Q ss_pred HhcCCEEEeCceEEEEEE---ECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 216 ISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~---~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
++.|+.++.+..++.+.. ++.++.|.+.+|..+.|+=+|-+.|++
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 999999999999998863 344677888889899999999999976
No 96
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.69 E-value=2.2e-07 Score=97.87 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=47.7
Q ss_pred ceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+...|.+++.+. |++++++++|++++. + .|.+++| +++|+.||.|.|..|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChh
Confidence 3479999999999988775 999999999999854 2 5666556 4789999999999875
No 97
>PLN02661 Putative thiazole synthesis
Probab=98.68 E-value=4.6e-07 Score=94.46 Aligned_cols=130 Identities=18% Similarity=0.305 Sum_probs=81.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCCCCCcccc----CC-----HHHHHHHHHcCCCCcccchhhhhhc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN----IS-----RKELLELVESGILVEDDIDEATATK 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~~~~r~~~----IS-----~~~l~~L~~lGl~~~~eie~~i~~~ 178 (549)
++||+||||| +|+++|+.|+++ |++|+||||...++. +.|. ++ ......|+++|+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG-G~~~gg~l~~~~vv~~~a~e~LeElGV~------------ 158 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG-GAWLGGQLFSAMVVRKPAHLFLDELGVP------------ 158 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc-ceeeCcccccccccccHHHHHHHHcCCC------------
Confidence 6999999976 599999999986 999999999876542 1121 00 0112233444431
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCE---EEEEE-----c--CC--
Q 008915 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENA---AVLLL-----A--EG-- 245 (549)
Q Consensus 179 ~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dg---v~V~~-----~--dG-- 245 (549)
|..... +....+...+...|.+++.+ .|++++.++.++++..+++. +++.. + ++
T Consensus 159 -------fd~~dg------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~ 225 (357)
T PLN02661 159 -------YDEQEN------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSC 225 (357)
T ss_pred -------cccCCC------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCc
Confidence 110000 00011223445667776654 68899999999999887664 22211 1 11
Q ss_pred ---cEEEcCEEEEccCCChHHHH
Q 008915 246 ---KILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 246 ---~~i~ArlVI~ADG~~S~vrr 265 (549)
..++||.||.|+|+..++..
T Consensus 226 ~dp~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 226 MDPNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred cceeEEECCEEEEcCCCCCcchh
Confidence 26899999999998887554
No 98
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.66 E-value=2e-07 Score=100.03 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=89.5
Q ss_pred EEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC------ccccCCHH-HHHHH-HHcCCCCcccchhhhhhccCCCc-
Q 008915 114 IVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELLEL-VESGILVEDDIDEATATKFNPNR- 183 (549)
Q Consensus 114 IIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~------r~~~IS~~-~l~~L-~~lGl~~~~eie~~i~~~~~~~~- 183 (549)
|||||| +|+++|+.|+++|++|+|+||++.++.+ .-.|++.. ....+ ...+- ....+.... ..|....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSAL-SRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHHH-HhCCHHHH
Confidence 577855 6999999999999999999998865432 01122211 01111 11110 000011100 1111000
Q ss_pred cccc-C-Ccccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 184 CGFE-G-KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 184 i~f~-~-~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
+.|. . +-++... ..+...-....+.+.|.+.+.+.|++++.++.|+++..+++.+.|.+ +++++.||.||.|+|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence 0000 0 0000100 01111113456778888889889999999999999988777777777 566899999999999
Q ss_pred CCh-----------HHHHHhcCC
Q 008915 259 NFS-----------PVVKQIRSG 270 (549)
Q Consensus 259 ~~S-----------~vrrql~~~ 270 (549)
..| .++++++..
T Consensus 158 ~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 158 GLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred CcccCCCCCCcHHHHHHHHCCCC
Confidence 987 577777654
No 99
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.63 E-value=4.1e-07 Score=100.74 Aligned_cols=113 Identities=24% Similarity=0.279 Sum_probs=82.7
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
..+|||+||||| +|+++|..|++.|++|+|||+. ..+. |.- ..+ ++. + ..+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~~---------~~~------~~~-----~----~~~ 260 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VLD---------TMG------IEN-----F----ISV 260 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---eec---------cCc------ccc-----c----CCC
Confidence 447999999975 5888999999999999999864 2121 100 000 000 0 000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+ ..+...+.+.|.+.+++.|++++.+++++++...++.+.|.+++|.+++++.||.|+|..+
T Consensus 261 --------~-----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 261 --------P-----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred --------C-----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 0 0233467788888888889999999999999888788888888888999999999999875
No 100
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.62 E-value=7.8e-07 Score=99.05 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEE-----EcCC-cEEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL-----LAEG-KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~-----~~dG-~~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++++.|+++++++.++++..+++ ++.+. ..++ .++.|+.||.|+|..|.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 45778888888888999999999999987754 34333 1233 36999999999999884
No 101
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.62 E-value=9e-07 Score=97.81 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE---EEEEEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+.+.+.|++++.+++++++..+++. +.+...+++ +++|+.||.|+|..+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 456778888888899999999999999876554 334434433 6999999999997764
No 102
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.59 E-value=3.9e-07 Score=101.10 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=85.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CCCcc----ccCCHH-HHHHHHHcCCCCcccchhhhh---hccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQE----WNISRK-ELLELVESGILVEDDIDEATA---TKFN 180 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~~r~----~~IS~~-~l~~L~~lGl~~~~eie~~i~---~~~~ 180 (549)
||||||||| +|+.+|.++|+.|.+|+|||+.... +...+ ..+..+ -...+..+|=. +..+.. ..|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~----~~~~~d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGL----MGKAADKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccch----HHHHHHhhceehe
Confidence 799999976 6889999999999999999987432 11111 011111 12233333311 011110 0110
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEE-CCE-EEEEEcCCcEEEcCEEEEcc
Q 008915 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~-~dg-v~V~~~dG~~i~ArlVI~AD 257 (549)
...... +..++.+ ...+|+..+.+.+.+.+.+. +++++. .+++++..+ ++. +.|.+.+|..+.|+.||.|+
T Consensus 77 ~ln~sk--gpAV~~~---RaQVDr~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILAT 150 (617)
T TIGR00136 77 VLNSSK--GPAVRAT---RAQIDKVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITT 150 (617)
T ss_pred ecccCC--CCccccc---HHhCCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEcc
Confidence 000000 1112221 24689999999999999888 456664 477777665 333 44777788899999999999
Q ss_pred CCCh
Q 008915 258 GNFS 261 (549)
Q Consensus 258 G~~S 261 (549)
|.++
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9994
No 103
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.58 E-value=9.9e-07 Score=98.80 Aligned_cols=59 Identities=15% Similarity=0.362 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EE---EcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~---~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+.|+++++++.++++..+++.++ |. ..+|+ .++|+.||.|+|..|.+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 35677888888888999999999999988766443 22 23554 68999999999998854
No 104
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.54 E-value=1.7e-06 Score=97.57 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=83.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCc----cccC--------CHHH-HHHHHHc--CCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQ----EWNI--------SRKE-LLELVES--GILVEDDI 171 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r----~~~I--------S~~~-l~~L~~l--Gl~~~~ei 171 (549)
++|||||||| +|+++|+.+++. |.+|+||||....+... .+.+ +... .+.+... ++.++.-+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 6999999965 699999999998 99999999987643221 1111 1111 0111111 11111000
Q ss_pred hhhhh------hccCCCcccccCC--ccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEE---
Q 008915 172 DEATA------TKFNPNRCGFEGK--GEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV--- 239 (549)
Q Consensus 172 e~~i~------~~~~~~~i~f~~~--~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~--- 239 (549)
+.... .......+.|... ..+.........+....+.+.|.+++.+.| ++++.++.++++..+++.+.
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~ 170 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV 170 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 00000 0000001112100 000000000011345567788888888776 89999999999987666432
Q ss_pred E-EEcCCc--EEEcCEEEEccCCChH
Q 008915 240 L-LLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 240 V-~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+ ...+++ +++|+.||.|+|..+.
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCchhh
Confidence 2 223454 7999999999998764
No 105
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.54 E-value=1.5e-06 Score=95.67 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE-EEEcC-C--cEEEcCEEEEccCCChHH
Q 008915 204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE-G--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 204 ~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~d-G--~~i~ArlVI~ADG~~S~v 263 (549)
...+.+.|.+++.+ .|+++++++.++++..+++.+. |.+.+ + .+++|+.||.|+|..|.+
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 35677888888887 5899999999999987665544 33332 3 378999999999999864
No 106
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.54 E-value=1.3e-06 Score=98.14 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE----EEEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+. ++++++++.++++..+++.+. +...+|+ .++|+.||.|+|..|.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 35667788877765 789999999999988766543 2334563 79999999999999865
No 107
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=1.2e-06 Score=98.39 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE----EEEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~----V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+.|+++++++.++++..+++.+. +...+|+ .++|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 45777888888888999999999999987665432 2233554 69999999999998753
No 108
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.52 E-value=1.7e-06 Score=94.53 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE--cCC--cEEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~dG--~~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++++.|++++.+++++++..+++.++ |.+ .++ .+++|+.||.|+|..+.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 45778888889889999999999999987666543 333 233 36899999999997654
No 109
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.52 E-value=1.3e-06 Score=94.62 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEEEcCCc--EEEcCEEEEccCCChH
Q 008915 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+...+.+.|.+++.+.|++++.+++++++..+++ ++++...+++ .+.+|.||.|+|..|.
T Consensus 128 ~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 128 SGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 3456788889999999999999999999988654 3334433444 5789999999998886
No 110
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.51 E-value=1.3e-06 Score=96.75 Aligned_cols=113 Identities=25% Similarity=0.350 Sum_probs=80.3
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
...|||+||||| +|+++|..|++.|++|+|||.. ..+... . ..+ ++ . +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~--~----------~~~------~~-----~-------~ 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK--D----------TVG------IE-----N-------L 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc--c----------CcC------cc-----c-------c
Confidence 446999999975 5888999999999999999752 211100 0 000 00 0 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+ .+. .....+.+.+.+.+.+.|++++.+++|+++..+++.+.|.+++|.+++++.||.|+|...
T Consensus 259 ~~-----~~~-----~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 259 IS-----VPY-----TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred cc-----cCC-----CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 00 000 123456677778888889999999999999887777888887888999999999999863
No 111
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.51 E-value=1.3e-06 Score=93.82 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCChH-HHHHh
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP-VVKQI 267 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S~-vrrql 267 (549)
-..+.+.|.+.+++.|++++.+++++++..+++.|+ |.+. +|+ +++|+-||.|+|..+. ..++.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~ 210 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQY 210 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccccccccc
Confidence 356788999999999999999999999999877544 3332 455 6899999999999994 44443
No 112
>PRK07121 hypothetical protein; Validated
Probab=98.50 E-value=3.7e-06 Score=92.57 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE-EEEc-CCc--EEEc-CEEEEccCCChH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLLA-EGK--ILSS-HLIIDAMGNFSP 262 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~~~-dG~--~i~A-rlVI~ADG~~S~ 262 (549)
...+.+.|.+++++.|++++.+++++++..++++ ++ |.+. +++ +++| +.||.|+|..+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 4567888999998899999999999999876542 22 2222 333 6889 999999998774
No 113
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.49 E-value=2.2e-06 Score=96.90 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEEE---E-EEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV---L-LLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~---V-~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++.+.|++++.++.++++..+ ++.+. + ...+|+ .++|+.||.|+|..+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 367788888888889999999999999874 33222 2 223454 6899999999998753
No 114
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.46 E-value=3.3e-06 Score=94.72 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE----EEEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+. ++++++++.++++..+++.+. +...+|+ .+.|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45778888887664 789999999999988766443 2233563 79999999999998864
No 115
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=2.8e-06 Score=95.68 Aligned_cols=57 Identities=12% Similarity=0.277 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE---E-EEcCCc--EEEcCEEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV---L-LLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~---V-~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
.+...|.+++.+.|+++++++.++++..++++ ++ + ...+|+ .+.|+-||.|+|..+.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 57778888888889999999999999876543 22 2 123554 7999999999998864
No 116
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.4e-06 Score=88.10 Aligned_cols=112 Identities=26% Similarity=0.351 Sum_probs=76.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCc-EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~Glr-VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|||||||| |+|+++|..++|+|++ ++++|+....+.. ..+. + +..| ..|.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~----------------~~~~--~-----veny----pg~~ 55 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL----------------TKTT--D-----VENY----PGFP 55 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcc----------------ccce--e-----ecCC----CCCc
Confidence 699999996 5699999999999999 7777765443210 0000 0 0111 0111
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
+ .+.-..|.+.+.+.+...|+++.. ..+..++..++.++|.+.++. ++||.||.|+|....
T Consensus 56 ~------------~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 56 G------------GILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred c------------CCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 0 123345677777788777888777 778887766657888887776 999999999998763
No 117
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=2.7e-06 Score=95.49 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE---E-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 206 ~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~---V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+.+.|.+++.+ .|+++++++.++++..+++.+. + ...+|+ .++|+.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 466777777766 5889999999999987665432 2 223554 68999999999998654
No 118
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.43 E-value=3.7e-06 Score=95.23 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE-EEE---cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLL---AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~~---~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++.+.|+++++++.++++..++++ +. |.+ .+|+ .+.|+-||.|+|..+.
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 357788888888889999999999998876433 22 222 2454 7899999999998864
No 119
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.42 E-value=2.9e-06 Score=92.60 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=87.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----C--C
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF-----N--P 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~-----~--~ 181 (549)
..+|+||||| +|+++|..|.+.|++|+|+||....+ ..|+.++..-. ..+++-+...+ +...-| + .
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G~W~~~~~~~~--d~~~~~~~~~~--~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--GLWVYTPKSES--DPLSLDPTRSI--VHSSVYESLRTNLPR 83 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--ceeecCCCcCC--CccccCCCCcc--cchhhhhhhhccCCH
Confidence 5899999976 58899999999999999999987655 34554322100 01111100000 000011 0 0
Q ss_pred CcccccC---Ccccc-c-cccccceeCHHHHHHHHHHHHHhcCCE--EEeCceEEEEEEECCEEEEEEcCC--c--EEEc
Q 008915 182 NRCGFEG---KGEIW-V-EDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG--K--ILSS 250 (549)
Q Consensus 182 ~~i~f~~---~~~l~-~-~~~l~~~V~~~~L~~~L~~~a~~~G~~--v~~~t~v~~i~~~~dgv~V~~~dG--~--~i~A 250 (549)
..+.|.+ ..... . .+...+ .....+.+.|.+.+...|.. |+.+++|+++...++.+.|++.++ . +..+
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~f-p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~ 162 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRY-PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIF 162 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCC-CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEc
Confidence 0111111 00000 0 000001 23466888899888888875 899999999998888899888642 2 4678
Q ss_pred CEEEEccCCCh
Q 008915 251 HLIIDAMGNFS 261 (549)
Q Consensus 251 rlVI~ADG~~S 261 (549)
|.||.|+|+.+
T Consensus 163 d~VIvAtG~~~ 173 (461)
T PLN02172 163 DAVVVCNGHYT 173 (461)
T ss_pred CEEEEeccCCC
Confidence 99999999865
No 120
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.42 E-value=4.2e-06 Score=88.58 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=53.8
Q ss_pred ceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH-HHHhc
Q 008915 200 LGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV-VKQIR 268 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v-rrql~ 268 (549)
..+++..+.+.|.+.+.+.|+ .+..++.++.+....+.+.|.+.+|+ ++|+.||-|.|.+|.. ...++
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 357899999999999999995 66778999988764255677776776 9999999999999874 33344
No 121
>PRK07233 hypothetical protein; Provisional
Probab=98.42 E-value=0.00024 Score=76.30 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+.+.|.+.+.+.|++|+.+++|++|+.+++++++...++++++||.||-|....
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 3567777788778999999999999998888776555577789999999998864
No 122
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.41 E-value=3.8e-06 Score=91.04 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE--EEEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV--LLLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~--V~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++.+ .|++++++++++++..+++.+. +...++. +++|+-||.|+|..+.
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 4567778877765 4899999999999987666432 1122443 6999999999998653
No 123
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=1.1e-05 Score=90.44 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+.|+++++++.++++..+++.++ |.+. +++ .++|+-||.|+|..+.+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 34667788888888999999999999998765433 2221 333 68999999999988743
No 124
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.35 E-value=1.8e-06 Score=92.15 Aligned_cols=113 Identities=20% Similarity=0.089 Sum_probs=74.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC---------CccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---------EQEWNISRKELLELVESGILVEDDIDEATATKFN 180 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~---------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~ 180 (549)
-||+||||| +|+.+|+.||++|++|.|+|+.+.+.. .+.-++|.++...+...|+|.. +++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~-em~~l------ 75 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKE-EMRRL------ 75 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHH-HHHHh------
Confidence 589999977 599999999999999999998765432 1223466667777888898852 22211
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEE
Q 008915 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC 232 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~ 232 (549)
+.+.+........+..-...+|+..|.+.|.+++.+. +++++ ..+|+++.
T Consensus 76 -gsl~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 76 -GSLIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred -cchheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 0011221111122222124689888999999999876 56777 66888874
No 125
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.34 E-value=7.4e-06 Score=92.99 Aligned_cols=55 Identities=7% Similarity=0.184 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCChH
Q 008915 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S~ 262 (549)
.+.|.+++.+.|+++++++.++++..+++.++ |.+. +|+ .+.|+.||.|+|..+.
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 35666677778999999999999987765433 2222 454 6899999999999764
No 126
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=7.5e-06 Score=91.34 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE-EE--E-cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL--L-AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~--~-~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++.+.|++++.++.++++..++++ ++ |. . .+|+ .++|+-||.|+|..+.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 456677888888889999999999999887665 32 22 1 3554 6999999999998764
No 127
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.32 E-value=8.7e-06 Score=89.09 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChHHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
..+.+.|.+++.+.|++++.. .++++..+++.+. |.+ ++..++|+-||.|+|..|.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSGLF 178 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcCCC
Confidence 467788888998889998876 7888876655554 333 567899999999999998754
No 128
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=1.1e-05 Score=90.80 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEEC----CEE---EE-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~----dgv---~V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+.|+++++++.++++..++ +.+ .+ ...+|+ .++|+-||.|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 4577888888888899999999999998665 322 22 223454 68999999999998743
No 129
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=1e-05 Score=91.00 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEE--E---EcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--L---LAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V--~---~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+.|+++++++.++++..++++.++ . ..+|+ .+.|+-||.|+|..+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 357778888888889999999999999876443222 1 23454 68999999999998753
No 130
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.30 E-value=1.4e-05 Score=90.05 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-E---EEE-EcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VLL-LAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V~-~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..|...|.+++.+.|++++.++.++++..++++ + .+. ..+|+ .+.|+-||.|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 357788888888889999999999999876443 2 221 22454 68999999999998754
No 131
>PLN02815 L-aspartate oxidase
Probab=98.29 E-value=1.1e-05 Score=90.68 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCCCCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccc---cC--------CHHH-HHHHHHcC--CCCc
Q 008915 104 SDKAVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRKE-LLELVESG--ILVE 168 (549)
Q Consensus 104 ~~~~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~---~I--------S~~~-l~~L~~lG--l~~~ 168 (549)
.++...++|||||||| +|+++|+.+++.| +|+||||....+....| .| |... ++.....| +.++
T Consensus 23 ~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~ 101 (594)
T PLN02815 23 DDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDE 101 (594)
T ss_pred ccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcH
Confidence 4445557999999965 6999999999999 99999998875432111 11 1111 01111111 1111
Q ss_pred ccchhhhh-----hcc-CCCcccccCC--ccccc--------cccc-cceeCHHHHHHHHHHHHHhc-CCEEEeCceEEE
Q 008915 169 DDIDEATA-----TKF-NPNRCGFEGK--GEIWV--------EDIL-NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSS 230 (549)
Q Consensus 169 ~eie~~i~-----~~~-~~~~i~f~~~--~~l~~--------~~~l-~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~ 230 (549)
.-++.++. .++ ....+.|... ..+.. +..+ .....-..+...|.+++.+. |+++++++.+++
T Consensus 102 ~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~ 181 (594)
T PLN02815 102 ETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence 10111100 000 0001122100 00000 0000 00011235667788888765 789999999999
Q ss_pred EEEECCE----EE-EEE---cCCc--EEEcCEEEEccCCChH
Q 008915 231 ICTYENA----AV-LLL---AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 231 i~~~~dg----v~-V~~---~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+..++++ ++ |.+ .+|+ .+.|+-||-|+|..+.
T Consensus 182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 9876432 21 222 2454 6899999999998764
No 132
>PRK08275 putative oxidoreductase; Provisional
Probab=98.28 E-value=1.2e-05 Score=89.83 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-E---EE-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+.+.|.+++.+.|++++.++.++++..++++ + .+ ...+|+ .++|+.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 57788888888889999999999999876333 2 22 123554 58999999999998753
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.28 E-value=9.1e-06 Score=90.88 Aligned_cols=110 Identities=16% Similarity=0.272 Sum_probs=75.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|+++|..|+++|++|+|||+....+.. ..+ . .+ ..| .+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~---~~~-------------~--~i-----~~~-------pg 53 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQI---TIT-------------S--EV-----VNY-------PG 53 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceE---Eec-------------c--cc-----ccC-------CC
Confidence 5999999975 6888888999999999999987543311 000 0 00 001 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.. .+....+.+.+.+.+.+.|++++ .++|+++..+++.+.|.+.++ .+.++.||.|+|..+
T Consensus 54 ~~----------~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 54 IL----------NTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred Cc----------CCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence 00 12234556667777777788875 678888887666667777555 589999999999875
No 134
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.25 E-value=1.7e-05 Score=87.75 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE--cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++. .|+++++++.++++..+++.+. |.+ .+|+ .++|+.||.|+|..+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 446677777775 6899999999999977655433 222 2343 6899999999999774
No 135
>PRK09897 hypothetical protein; Provisional
Probab=98.24 E-value=1.3e-05 Score=88.65 Aligned_cols=149 Identities=12% Similarity=0.088 Sum_probs=79.8
Q ss_pred ccEEEEcchH-HHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccc-hhhhhhccCCCc-cc
Q 008915 111 FDVIVCGGTL-GIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDI-DEATATKFNPNR-CG 185 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~ei-e~~i~~~~~~~~-i~ 185 (549)
.+|+|||||+ |+++|..|++. .++|.|+|+...++....|.....+-..+....-.+.... .++. +|.... ..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~--~Wl~~~~~~ 79 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYL--EWLQKQEDS 79 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHH--HHhhhhhHH
Confidence 5799999765 99999999875 4699999998766644444331111111111110000000 0000 010000 00
Q ss_pred -cc--CC--ccccccccccceeCHHH---HHHHHHHHHHhcC--CEEEeCceEEEEEEECCEEEEEEcC-CcEEEcCEEE
Q 008915 186 -FE--GK--GEIWVEDILNLGVSPAK---LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLII 254 (549)
Q Consensus 186 -f~--~~--~~l~~~~~l~~~V~~~~---L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~V~~~d-G~~i~ArlVI 254 (549)
+. +. ..+.....+...+--.+ ..+.+.+.+.+.| ++++..++|+++..+++++.|++.+ +.++.|+.||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 00 00 00000000111111112 2233445556666 5788899999999998999998855 4689999999
Q ss_pred EccCCCh
Q 008915 255 DAMGNFS 261 (549)
Q Consensus 255 ~ADG~~S 261 (549)
.|+|+..
T Consensus 160 LAtGh~~ 166 (534)
T PRK09897 160 IATGHVW 166 (534)
T ss_pred ECCCCCC
Confidence 9999754
No 136
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=1.9e-05 Score=89.49 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=31.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
++|||||||| +|+++|+.+++.|.+|+||||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 6999999965 69999999999999999999987654
No 137
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.23 E-value=0.0012 Score=71.99 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=34.8
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
++|+.+++|+.|+.+++++.|.+.+|+++.||.||.|.-
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 479999999999999999988887888899999998883
No 138
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.23 E-value=2.2e-05 Score=89.39 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE---EEEEE-cCCc--EEEcCEEEEccCCChHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~-~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+...|.+++.+.|+++++++.++++..+++. +++.. .+|+ .+.|+-||-|+|..+.+
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 35567888888889999999999999877654 33332 3564 57899999999976643
No 139
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.22 E-value=9.3e-06 Score=88.34 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=71.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|.++|..++++|++|+|+||....+.+..+. +..+.+..-. .+.. .++.. ..+ .+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a--~~~~--~~~~~--~~~---g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGS--TFGG--EFEDA--AGY---GWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHH--HHHH--HHhhh--Hhc---CcCCC
Confidence 6999999976 58888889999999999999976655332111 2222110000 0000 00000 000 00000
Q ss_pred CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
...+..+..... .+ -..+.+.+.+.+...|++++.+ +++.++ .+.+.|. .+|+++++|.||-|+|...
T Consensus 73 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 73 -KARFDWKKLLQK-KDDEIARLSGLYKRLLANAGVELLEG-RARLVG--PNTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred -CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec--CCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 000111000000 00 0123345555666779988876 454442 3445554 3577899999999999753
No 140
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.20 E-value=1.6e-05 Score=89.33 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc--CCc-EEEcC-EEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK-ILSSH-LIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--dG~-~i~Ar-lVI~ADG~~S~ 262 (549)
.+.+.|.+++.+.|++++.++.|+++..+++.++ |.+. ++. .+.++ -||-|.|..+.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 3556677888888999999999999988766443 3332 343 57884 78889998873
No 141
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.19 E-value=1.4e-05 Score=89.83 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE---EEEcCCc-EEEc-CEEEEccCCChH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSS-HLIIDAMGNFSP 262 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~dG~-~i~A-rlVI~ADG~~S~ 262 (549)
...|...|.+++++.|++++.+++|+++..+++.++ +...++. +++| +.||-|.|..+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 345667888889999999999999999987655432 3322343 5889 989999998875
No 142
>PTZ00058 glutathione reductase; Provisional
Probab=98.19 E-value=9.4e-06 Score=90.60 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=33.0
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
.+||||||||| .|.++|..+++.|.+|+||||....+.+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtC 86 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTC 86 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccc
Confidence 47999999976 5778888999999999999998766643
No 143
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.18 E-value=3.4e-05 Score=86.40 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE-cCCc--EEEc-CEEEEccCCChHHH
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPVV 264 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~dG~--~i~A-rlVI~ADG~~S~vr 264 (549)
|...|.+++.+.|++++.+++++++..+++.|+ |.. .+|+ .+.| +-||-|+|..+...
T Consensus 219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 219 LAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 445677778888999999999999986544332 212 2343 4666 57888999888643
No 144
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.17 E-value=3.3e-05 Score=87.00 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||| +|+++|+.++++|.+|+||||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4699999965 69999999999999999999987654
No 145
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.15 E-value=3.9e-05 Score=83.64 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCChHHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S~vr 264 (549)
.+.+.+.+.+++.|++++.+++++++..+++++.+.+.+| +++.++.||.|.|..+.+.
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 3456677778888999999999999988878888777666 4799999999999887643
No 146
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.12 E-value=2.5e-05 Score=85.19 Aligned_cols=137 Identities=22% Similarity=0.280 Sum_probs=72.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+|||+||||| +|+.+|..|+++|++|+||||+. +.+...-++ +....+...... .. ..+. ...| ..+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~--~~--~~~~--~~~~----~~~ 74 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLR--LI--GFNQ--NPLY----SSY 74 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHH--HH--HHhh--hhhh----ccc
Confidence 6999999976 58889999999999999999964 444321111 222221110000 00 0000 0000 000
Q ss_pred cCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc--EEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~--~i~ArlVI~ADG~~S 261 (549)
.....+..+..+. ..+ ..+.+.+.+.+.+.|++++.++. .. .++..+.|...+|+ ++++|.||-|+|...
T Consensus 75 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~~~~g~~-~~--~~~~~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 75 RVKLRITFADLLARADHVI--NKQVEVRRGQYERNRVDLIQGRA-RF--VDPHTVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred CCcCccCHHHHHHHHHHHH--HHHHHHHHHHHHHCCCEEEEEEE-EE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 0000000000000 000 11233455566677888887742 22 34556777776664 799999999999653
No 147
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.11 E-value=1.5e-05 Score=85.66 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=76.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC---------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~---------r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~ 180 (549)
.||+||||| +|+.+|..||++|++|+|+|+.+..... +..+.|.++...+...|+|.. +++.. .
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~-ei~~l-----g 74 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT-EMRQL-----S 74 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH-HHhhc-----C
Confidence 379999987 5999999999999999999987653211 112334444555666676642 22211 0
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
...+.......++..-.+.+++..+.+.+.+++.+... +++ ..+++++.. .+.||.|+|.
T Consensus 75 --~l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL~~----------------~d~VViATG~ 135 (433)
T TIGR00137 75 --SLIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEIPE----------------EGITVIATGP 135 (433)
T ss_pred --eeeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEEcc----------------CCeEEEeCCC
Confidence 01111111111122223467898889999999877643 443 555555431 2366667774
Q ss_pred --ChHHHHHh
Q 008915 260 --FSPVVKQI 267 (549)
Q Consensus 260 --~S~vrrql 267 (549)
...+.+++
T Consensus 136 ~~s~~La~~L 145 (433)
T TIGR00137 136 LTSPALSEDL 145 (433)
T ss_pred CccHHHHHHH
Confidence 33455554
No 148
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.10 E-value=2.1e-05 Score=88.09 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc-CCc--EEEcC-EEEEccCCChH
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP 262 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-dG~--~i~Ar-lVI~ADG~~S~ 262 (549)
+...|.+.+++.|++++.+++++++..+++.|+ |.+. +++ +++|+ -||-|+|..+.
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 556677778888999999999999988766443 3332 443 68896 47777776655
No 149
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.10 E-value=2.3e-05 Score=85.38 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=32.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+|||+||||| .|..+|..++++|++|+||||....+.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c 40 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTC 40 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccce
Confidence 5999999976 5888888999999999999998766643
No 150
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.10 E-value=6.9e-05 Score=83.75 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=30.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++||||||+| +|+++|+.++++|.+|+||||.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 7999999965 68899999999999999999988
No 151
>PLN02612 phytoene desaturase
Probab=98.09 E-value=0.0014 Score=73.64 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEEccCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+-+.|.+.+++.|++|+.+++|++|..++++. .|.+.+|+++.||.||-|...
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 33555566666899999999999999876663 366668889999999999854
No 152
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.09 E-value=3.2e-05 Score=86.44 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEEC-CE-EE-EE-EcCCc--EEEcCEEEEccCCCh
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE-NA-AV-LL-LAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~-dg-v~-V~-~~dG~--~i~ArlVI~ADG~~S 261 (549)
..+...|.+++.+. |+++++++.++++..++ ++ +. |. ..+|. .+.|+-||-|+|..+
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 34667777777654 88999999999998764 23 21 21 23554 589999999999853
No 153
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=4.4e-05 Score=83.32 Aligned_cols=136 Identities=26% Similarity=0.248 Sum_probs=70.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhh-hccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATA-TKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~-~~~~~~~i~f 186 (549)
+||||||||| +|+++|..|+++|++|+||||....+.+..++ +..+.+... ..+ ++.... ..+ + +..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~--~~~-----~~~~~~~~~~--g-~~~ 73 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHA--AER-----ADEARHSEDF--G-IKA 73 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHh--hhH-----HHHHHHHHhc--C-ccc
Confidence 6999999976 58888889999999999999987655321111 221211100 000 000000 011 0 000
Q ss_pred cCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-CcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-G~~i~ArlVI~ADG~~S 261 (549)
. ...+....... ..+ ..+..-+.+.+.+.|++++.++. +. .++..+.|...+ ++++++|.||-|+|...
T Consensus 74 ~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~~~~g~~-~~--~~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 74 E-NVGIDFKKVQEWKNGVV--NRLTGGVEGLLKKNKVDIIRGEA-KL--VDPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred C-CCccCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 0 00000000000 000 11222345556667899887743 22 344556666433 46899999999999764
No 154
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1.9e-05 Score=85.81 Aligned_cols=131 Identities=22% Similarity=0.296 Sum_probs=75.5
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCc-EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
..++||+||||| .|+++|.+|.++|.. ++++||+..++ ..|...+. -++..... .....|. ...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G--g~W~~~ry-------~~l~~~~p---~~~~~~~--~~p 71 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG--GTWRYNRY-------PGLRLDSP---KWLLGFP--FLP 71 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC--CcchhccC-------CceEECCc---hheeccC--CCc
Confidence 347999999977 588899999999999 99999997655 23432110 01110000 0000110 011
Q ss_pred ccCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEEC--CEEEEEEcCCcE--EEcCEEEEccCC
Q 008915 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKI--LSSHLIIDAMGN 259 (549)
Q Consensus 186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~--dgv~V~~~dG~~--i~ArlVI~ADG~ 259 (549)
|. +.+..... ..+...+.+.+...+. ++...+.|+.+..++ +.++|++++|.+ ++||.||-|+|.
T Consensus 72 ~~-----~~~~~~~~----~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 72 FR-----WDEAFAPF----AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred cC-----CcccCCCc----ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 11 00000001 1144455555555554 566666666665544 479999987664 569999999998
Q ss_pred Ch
Q 008915 260 FS 261 (549)
Q Consensus 260 ~S 261 (549)
.|
T Consensus 143 ~~ 144 (443)
T COG2072 143 LS 144 (443)
T ss_pred CC
Confidence 65
No 155
>PRK10262 thioredoxin reductase; Provisional
Probab=98.09 E-value=5.4e-05 Score=78.51 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=71.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.+||+||||| +|+++|..|+++|++|++||+....+.. .. .. ++ ..+ .+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~---~~-------------~~--~~-----~~~-------~~ 55 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL---TT-------------TT--EV-----ENW-------PG 55 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCce---ec-------------Cc--eE-----CCC-------CC
Confidence 6999999976 5888888999999999999965432210 00 00 00 001 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.. ..++...+.+.+.+.+...+.+++.+ ++++++..++.+.++.++ ..+++|.||.|+|...
T Consensus 56 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 56 DP---------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALIIATGASA 117 (321)
T ss_pred CC---------CCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecC-CEEEECEEEECCCCCC
Confidence 00 01223345566666666667776654 577787777777776543 3699999999999874
No 156
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=2.4e-05 Score=85.66 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=72.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.||||||||| +|.++|..|+++|++|+|||+..+.+.+..+. +..+.+-... .+ +.... ......+...
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a--~~-----~~~~~--~~~~~g~~~~ 74 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSA--EV-----FQTAK--KASPFGISVS 74 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHH--HH-----HHHHH--HHHhcCccCC
Confidence 6999999976 58888889999999999999986655432111 2222211100 00 00000 0000000000
Q ss_pred CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-----CCEEEEEEcCC--cEEEcCEEEEccC
Q 008915 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTY-----ENAAVLLLAEG--KILSSHLIIDAMG 258 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-----~dgv~V~~~dG--~~i~ArlVI~ADG 258 (549)
...+..+..... .+ ...+.+...+.+.+.|++++.+. ++.++.+ ++.+.|.+++| .++++|.||-|+|
T Consensus 75 -~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATG 151 (472)
T PRK05976 75 -GPALDFAKVQER-KDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATG 151 (472)
T ss_pred -CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCC
Confidence 000000000000 00 01122333344556688988874 3334322 22677777676 4799999999999
Q ss_pred CCh
Q 008915 259 NFS 261 (549)
Q Consensus 259 ~~S 261 (549)
...
T Consensus 152 s~p 154 (472)
T PRK05976 152 SRP 154 (472)
T ss_pred CCC
Confidence 865
No 157
>PRK12839 hypothetical protein; Provisional
Probab=98.08 E-value=7.2e-05 Score=83.95 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE----EEEEEcCCc-EE-EcCEEEEccCCChH
Q 008915 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-IL-SSHLIIDAMGNFSP 262 (549)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg----v~V~~~dG~-~i-~ArlVI~ADG~~S~ 262 (549)
+...|...|.+++.+.|++++.++.++++..++++ |.+...+++ ++ .+|-||-|+|..+.
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 44556777888898899999999999999775432 333333454 34 45888888887775
No 158
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=1.4e-05 Score=87.50 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=70.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCccc-cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~-~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+||||||||| .|..+|..+|++|++|+||||.+ +.+.+-.+ -+....+... ..+.. .++.. ..+ .+.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~--a~~~~--~~~~~--~~~---g~~~ 74 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHV--AKVIE--EAKAL--AEH---GIVF 74 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHH--HHHHH--HHhhh--hhc---Cccc
Confidence 6999999976 57788889999999999999874 44432111 1222211110 00000 00000 000 0000
Q ss_pred cCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S 261 (549)
. ...+..+.... -.+ ..+...+.+.+.+.|++++.++.. ..++..+.|+..+| .++++|.||-|+|...
T Consensus 75 ~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 75 G-EPKIDIDKMRARKEKVV--KQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred C-CCCcCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 0 00000000000 000 112223334455678999877532 23455677776566 4799999999999753
No 159
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.05 E-value=8.7e-05 Score=83.52 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=32.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.++||||||+| +|+++|+.++++|.+|+||||....+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 36999999965 68899999999999999999997644
No 160
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.05 E-value=9.4e-05 Score=82.45 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEEC------CEEE-EEE---cCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~------dgv~-V~~---~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+. +++++.++.++++..++ +.++ |.+ .+|+ .+.|+.||.|+|..+.+
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 35677788888765 78999999999997653 3322 222 2344 68999999999998854
No 161
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.05 E-value=6.1e-05 Score=83.45 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EEEc-CCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~-dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++.+. |++++.++.++++..+++.++ |.+. ++. ++.|+-||.|+|..+.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 45777888888765 889999999999876655332 2222 332 6999999999999763
No 162
>PRK14694 putative mercuric reductase; Provisional
Probab=98.04 E-value=4e-05 Score=83.91 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=32.5
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
-+||||||||| +|.++|..|++.|++|+|||+....+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt 43 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT 43 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence 37999999976 588888899999999999999866553
No 163
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.04 E-value=6e-05 Score=84.38 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE-cCCc--EEEcC-EEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH-LIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~dG~--~i~Ar-lVI~ADG~~S~ 262 (549)
.+...|.+++++.|++++.+++++++..+++.|+ |.+ .+|+ +++|+ -||-|+|..+.
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 3556777888889999999999999988765433 222 2443 58895 67778887765
No 164
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.04 E-value=0.00012 Score=78.19 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=57.6
Q ss_pred cceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCE-EEEEEcC---C--cEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 199 NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE---G--KILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 199 ~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg-v~V~~~d---G--~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
+.-||-..|-+.|.+.+.+. |++++.+++|+++.+.+|+ +.|++.| | .+++||+|+..-|..|- +.+..+++
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 34578888899999999887 8899999999999998887 8888743 3 38999998777777764 67767664
No 165
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.02 E-value=7.4e-05 Score=84.35 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=27.1
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
||||||| +|+++|+.+++.|.+|+||||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899965 69999999999999999999987
No 166
>PRK06116 glutathione reductase; Validated
Probab=98.01 E-value=4.7e-05 Score=82.89 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=31.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|||+||||| +|+++|..|+++|++|+|||+....+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG 40 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG 40 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence 6999999976 58888889999999999999976555
No 167
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.00 E-value=2.8e-05 Score=86.13 Aligned_cols=37 Identities=35% Similarity=0.402 Sum_probs=32.0
Q ss_pred CcccEEEEcchHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.++||||||+|+|+++|+.+|+.|.+|+||||....+
T Consensus 6 ~~~DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSGGGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECchHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 3799999995588889999999999999999987643
No 168
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.00 E-value=5.6e-05 Score=85.00 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc-CCc--EEEc-CEEEEccCCChHHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSS-HLIIDAMGNFSPVV 264 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-dG~--~i~A-rlVI~ADG~~S~vr 264 (549)
.+...|.+++++.|++++.+++++++..+++.++ |.+. +++ ++.| +-||-|+|..+.-.
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~ 285 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHP 285 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCH
Confidence 4667788889889999999999999987655443 3332 343 5786 78889999888743
No 169
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.99 E-value=5.9e-05 Score=83.72 Aligned_cols=137 Identities=20% Similarity=0.161 Sum_probs=79.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
-|+||||| .|+++|..|.+.|+.|+++||....+ +.|..+...-. ....++ +.... ......+.|.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG--G~W~~~~~~~~--g~~~~y-----~sl~~-n~sk~~~~fsd-- 70 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG--GLWRYTENPED--GRSSVY-----DSLHT-NTSKEMMAFSD-- 70 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS--GGGCHSTTCCC--SEGGGS-----TT-B--SS-GGGSCCTT--
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC--ccCeeCCcCCC--Cccccc-----cceEE-eeCchHhcCCC--
Confidence 38999976 58888889999999999999998766 23432110000 000001 11100 00011122221
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC-----EEEEEEcC-Cc--EEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d-----gv~V~~~d-G~--~i~ArlVI~ADG~~ 260 (549)
+..|....--.....+.+.|...+..-+. .+..+|+|++++..+| .+.|++++ |+ +-..|.||.|+|.+
T Consensus 71 -fp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 71 -FPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp -S-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred -cCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 11111111124567888999998887666 7899999999998754 58888764 43 34578899999998
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
+
T Consensus 150 ~ 150 (531)
T PF00743_consen 150 S 150 (531)
T ss_dssp S
T ss_pred C
Confidence 7
No 170
>PRK06370 mercuric reductase; Validated
Probab=97.98 E-value=5.4e-05 Score=82.72 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=32.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+||||||||| .|.++|..++++|++|+||||....+.+
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c 43 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTC 43 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCce
Confidence 6999999976 5888888999999999999998766643
No 171
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.97 E-value=0.00012 Score=60.07 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=60.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
|+|+||| .|+-+|..|++.|.+|.||++.+.+.. .
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~------------------~-------------------------- 37 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP------------------G-------------------------- 37 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST------------------T--------------------------
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh------------------h--------------------------
Confidence 7899976 599999999999999999998763210 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG 245 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG 245 (549)
++ ..+.+.+.+.+++.|++++.++.++++..+++++.|+++||
T Consensus 38 ----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 38 ----------FD-PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp ----------SS-HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred ----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 00 12344556677788999999999999999998877888775
No 172
>PLN02507 glutathione reductase
Probab=97.94 E-value=7.9e-05 Score=82.31 Aligned_cols=33 Identities=30% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEcc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr 140 (549)
..+||||||||| .|..+|..++++|.+|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 337999999976 577888899999999999997
No 173
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.93 E-value=0.0002 Score=80.81 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEEC---C---EEEE-EEcCCc--EEEcCEEEEccCCCh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE---N---AAVL-LLAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---d---gv~V-~~~dG~--~i~ArlVI~ADG~~S 261 (549)
.+.+.|...+.+.++++++++.++++..++ + |+.+ ...+|+ ++.|+.||-|+|..+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 445566666666678999999999998765 2 2333 223454 689999999999976
No 174
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=8.6e-05 Score=80.38 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=87.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.-+|+|||+| +|+++|..|.+.|+.|.++||....+. -|..+..+- .+.-+ -.++. .......-+.|.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~-----~~~ss--~Y~~l-~tn~pKe~~~~~d 75 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVE-----VVHSS--VYKSL-RTNLPKEMMGYSD 75 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCccc-----ccccc--hhhhh-hccCChhhhcCCC
Confidence 4689999965 699999999999999999999987652 233221100 00000 00000 0000001111111
Q ss_pred Ccccccc-ccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEEC-CEEEEEEcCC----cEEEcCEEEEccCCC
Q 008915 189 KGEIWVE-DILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~-dgv~V~~~dG----~~i~ArlVI~ADG~~ 260 (549)
+..+ +..++.-+...+.+.|.+.|+.-+. .+..++++..+.... +.+.|.+.++ .+.-+|.||.|+|.+
T Consensus 76 ---fpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 76 ---FPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred ---CCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 1111 1122334556888999998887765 889999999998877 6888888653 378899999999999
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
.
T Consensus 153 ~ 153 (448)
T KOG1399|consen 153 V 153 (448)
T ss_pred C
Confidence 5
No 175
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.92 E-value=4.6e-05 Score=83.07 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=29.2
Q ss_pred cccEEEEcchHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+|||||||||+|+..| +++..|.+|+||||....+.+
T Consensus 2 ~yD~vvIG~G~~g~~a-a~~~~g~~V~lie~~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIP-DPRFADKRIAIVEKGTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHH-HHHHCCCeEEEEeCCCCCCee
Confidence 5999999988765555 345579999999998877654
No 176
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.91 E-value=0.00016 Score=78.40 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CEEE--EEEc-CCcEEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV--LLLA-EGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~--V~~~-dG~~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++++.|++++.+++++++..++ ++.+ |... ++.+++||-||.|+|..+.-
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n 185 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGAN 185 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccC
Confidence 3577888899999999999999999998763 3333 2333 34589999999999987653
No 177
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.90 E-value=0.00021 Score=86.42 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=31.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.++|||||||| +|+++|+.+++.|.+|+||||.+..+
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 36999999965 68889999999999999999987654
No 178
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.89 E-value=0.0001 Score=80.86 Aligned_cols=31 Identities=39% Similarity=0.515 Sum_probs=28.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr 140 (549)
+||||||||| +|+++|..+++.|.+|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 6999999975 588899999999999999998
No 179
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.89 E-value=8.5e-05 Score=81.35 Aligned_cols=37 Identities=41% Similarity=0.553 Sum_probs=30.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGR 146 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~~ 146 (549)
+|||+||||| +|..+|..++++|++|+|||+. .+.+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~ 41 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT 41 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence 5999999965 5888888999999999999974 45443
No 180
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.89 E-value=0.00016 Score=77.91 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE--EEEcC---Cc--EEEcCEEEEccCCChHHHHHhcCCCCCCcee
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAE---GK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC 277 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~d---G~--~i~ArlVI~ADG~~S~vrrql~~~~~~~~~~ 277 (549)
.++.-.+.=-|..+|+.+.-..+|.++..++++-+ +.+.| |+ +|+|+.||-|+|..|---+++.-...+.-.|
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~ 303 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICV 303 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCceec
Confidence 34444444455567999999999999988877633 22222 54 7999999999999987555554332111122
Q ss_pred eEEeEee--eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCC-------CCcc---cHHH
Q 008915 278 LVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-------AGSP---KLEE 345 (549)
Q Consensus 278 ~~vg~~~--~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~-------~~~~---~L~~ 345 (549)
+..|+.. -+|-.+. ..+-+.|...+++-.| .+|=. + .+...+.+.+. +... ++.+
T Consensus 304 pSsGvHIVlP~yY~P~------~mGlldP~TsDgRViF--flPWq-g----~TIaGTTD~pt~v~~~P~PtE~dIqfIL~ 370 (680)
T KOG0042|consen 304 PSSGVHIVLPGYYCPE------NMGLLDPKTSDGRVIF--FLPWQ-G----KTIAGTTDIPTSVTHSPTPTEDDIQFILK 370 (680)
T ss_pred cCCceeEEcccccCCc------ccccccCCCCCCcEEE--EeccC-C----ceeeccCCCCCCCCCCCCCCHHHHHHHHH
Confidence 2222111 0110000 0111222222233333 24543 2 22333333221 1112 3334
Q ss_pred HHHHHHHhCcccccccCCceeEeeeeeeeeccccCC-----CCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 008915 346 LLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-----PLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLST 420 (549)
Q Consensus 346 l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~-----~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~ 420 (549)
....|+...+++++.+ + ...=.|+-|+.... ....++++++.+|+..-. -++ +|==...|+ +||
T Consensus 371 ev~~yl~~~~~VrR~D---V--lsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLi--TIa-GGKWTTyR~---MAE 439 (680)
T KOG0042|consen 371 EVQHYLSFDVEVRRED---V--LSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLI--TIA-GGKWTTYRH---MAE 439 (680)
T ss_pred HHHHhhCCCcccchhh---h--HHHhhCCcccccCCCccccchhhhhhceEEecCCCeE--EEe-cCcchhHHH---HHH
Confidence 4445555555555431 1 11112455555421 124678999999997543 233 343345554 565
Q ss_pred -HHHHHHhCCCCCh
Q 008915 421 -GVYEAVRGDFVDS 433 (549)
Q Consensus 421 -~i~~Al~~g~l~~ 433 (549)
.+..|++.+++..
T Consensus 440 eTVd~aI~~~~lk~ 453 (680)
T KOG0042|consen 440 ETVDAAIKAGDLKP 453 (680)
T ss_pred HHHHHHHHhCCCCC
Confidence 6888998887654
No 181
>PLN02546 glutathione reductase
Probab=97.88 E-value=0.00017 Score=80.64 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=28.4
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEcc
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr 140 (549)
..+|||||||||+ |..+|..+|++|.+|+|||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999765 77777899999999999996
No 182
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.87 E-value=8.9e-05 Score=82.62 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHh-cCCEEEeCceEEEEEEECCE-EE----EEEcCCc--EEEcCEEEEccCCCh
Q 008915 206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENA-AV----LLLAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dg-v~----V~~~dG~--~i~ArlVI~ADG~~S 261 (549)
.+.+.|.+++.+ .+.+++....++++..++++ +. ..+.+|+ .++|+-||-|+|...
T Consensus 139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 477888888877 45689999999999877664 21 2233455 688999999998765
No 183
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.85 E-value=0.00035 Score=71.50 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=52.2
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---------CC-----------EEEEEEcCC--cEEEcCEEEEccCC
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN 259 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---------~d-----------gv~V~~~dG--~~i~ArlVI~ADG~ 259 (549)
+|+-.|+..+++++...|+.+.. -+|++.+.+ ++ ++.|...|+ +++++.++|-|.|+
T Consensus 240 fdpw~LLs~~rrk~~~lGv~f~~-GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLGVQFVK-GEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA 318 (509)
T ss_pred cCHHHHHHHHHHHhhhhcceEec-ceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence 67888999999999988877654 456666543 22 244554443 47999999999999
Q ss_pred ChH-HHHHhcCCCCC
Q 008915 260 FSP-VVKQIRSGRKP 273 (549)
Q Consensus 260 ~S~-vrrql~~~~~~ 273 (549)
.|. |++..+++..+
T Consensus 319 ~s~QvArlAgIG~g~ 333 (509)
T KOG2853|consen 319 WSGQVARLAGIGKGP 333 (509)
T ss_pred cHHHHHHHhccCCCC
Confidence 997 88888888554
No 184
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.85 E-value=0.00023 Score=75.61 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=78.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.|.+|.++|+.+... . . .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l---------------------~-----~-----~---------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL---------------------A-----S-----L---------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc---------------------c-----h-----h----------
Confidence 369999976 59999999999999999999764210 0 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI 267 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql 267 (549)
.+ ..+...+.+.+++.|++++.+++++++..+++++.|.+.+|+++.+++||.|.|..+ .+.++.
T Consensus 181 ------------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~ 247 (377)
T PRK04965 181 ------------MP-PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA 247 (377)
T ss_pred ------------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence 00 112344556667789999999999999887777788888898999999999999855 465655
Q ss_pred cC
Q 008915 268 RS 269 (549)
Q Consensus 268 ~~ 269 (549)
+.
T Consensus 248 gl 249 (377)
T PRK04965 248 GL 249 (377)
T ss_pred CC
Confidence 44
No 185
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.85 E-value=3.5e-05 Score=76.52 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=73.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-C-----C-cccc------------CCHHHHHHHHHcCCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-R-----E-QEWN------------ISRKELLELVESGILVEDDI 171 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~-----~-r~~~------------IS~~~l~~L~~lGl~~~~ei 171 (549)
+|+|||+| +|+++|..|+.+|+.|+|+||..-.+ + . .+|. +-...++.+.+-|+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~---- 78 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD---- 78 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee----
Confidence 69999965 69999999999999999999987532 1 1 1110 1112233444444321
Q ss_pred hhhhhhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc-EEEc
Q 008915 172 DEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSS 250 (549)
Q Consensus 172 e~~i~~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~-~i~A 250 (549)
.+.+....|.+...-.......|.=++. + ..|.+ +.....+|+.+++|+.+...++.+++.+++|. ...+
T Consensus 79 ------~W~~~~~~~~~~~~~~~~d~~pyvg~pg-m-salak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~ 149 (331)
T COG3380 79 ------VWTPAVWTFTGDGSPPRGDEDPYVGEPG-M-SALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQF 149 (331)
T ss_pred ------eccccccccccCCCCCCCCCCccccCcc-h-HHHHH-HHhccchhhhhhhhhhheecCCeeEEEecCCCccccc
Confidence 1112222222110000000000110111 0 12222 33345689999999999999999999997653 6777
Q ss_pred CEEEEc
Q 008915 251 HLIIDA 256 (549)
Q Consensus 251 rlVI~A 256 (549)
+.||.|
T Consensus 150 d~vvla 155 (331)
T COG3380 150 DDVVLA 155 (331)
T ss_pred ceEEEe
Confidence 777765
No 186
>PRK13748 putative mercuric reductase; Provisional
Probab=97.83 E-value=0.00015 Score=81.27 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=31.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
+||||||||| .|.++|..|+++|++|+|||+....+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~ 135 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT 135 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence 6999999976 588888899999999999999866554
No 187
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.83 E-value=0.00033 Score=65.11 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=35.8
Q ss_pred cCCEE-EeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 218 LGGVI-FEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 218 ~G~~v-~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
.|++| +...+|+++...+++..|.+.+|..+.++.||-|.|+
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 35533 4567999999999999999999999999999999996
No 188
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.82 E-value=0.00022 Score=77.49 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=29.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+||||||||| +|+.+|..|+++|++|+||||.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5999999976 58889999999999999999974
No 189
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.81 E-value=1.7e-05 Score=87.23 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
.+.+.|.+.++++|++|+.+++|++|..+++ ++.+...+|..+++|.||.+...
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 5778899999999999999999999998877 56777766778999999987766
No 190
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.78 E-value=0.0002 Score=77.66 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=29.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+||||||||| +|.++|..|++.|++|+||||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6999999976 58888889999999999999985
No 191
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.76 E-value=0.00019 Score=72.73 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=52.8
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE---EEEEEcC--CcEEEcCEEEEccCCChHHH-HHhcCCC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAE--GKILSSHLIIDAMGNFSPVV-KQIRSGR 271 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~~d--G~~i~ArlVI~ADG~~S~vr-rql~~~~ 271 (549)
.||-..+-..+.+.+...|+.+..+-++..+.+..++ .-+.+.+ +++++++.+|.|.|-.|--. ...+...
T Consensus 192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~ 268 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCEL 268 (453)
T ss_pred eeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCC
Confidence 4777777788888999999999999999999876653 1222223 66999999999999888644 3334443
No 192
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.76 E-value=0.00041 Score=81.95 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.++|||||||| +|+++|+.+++.|.+|+||||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46999999965 699999999999999999999875
No 193
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.75 E-value=0.0003 Score=77.03 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=32.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
+||||||||| +|.++|..++++|.+|+|||+....+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~ 41 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGV 41 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 5999999976 588888899999999999999866654
No 194
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.00019 Score=78.33 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=31.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|.++|..|++.|++|+|||+....+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG 39 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG 39 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 5999999976 58888889999999999999965544
No 195
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.73 E-value=0.00029 Score=77.11 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=73.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhh-hhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i-~~~~~~~~i~f~ 187 (549)
-|||||||| .|..+|..++++|.+|+||||....+.+--+. +..+.+ +....+ ++... ...+ + +...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l--~~~a~~-----~~~~~~~~~~--g-~~~~ 71 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTL--IATAEV-----RTELRRAAEL--G-IRFI 71 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHH--HHHHHH-----HHHHHHHHhC--C-cccc
Confidence 379999976 58888889999999999999987665432111 211111 100000 00000 0000 0 0000
Q ss_pred --CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEE--EECCEEEEEEcCCc--EEEcCEEEEccCC
Q 008915 188 --GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGN 259 (549)
Q Consensus 188 --~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~--~~~dgv~V~~~dG~--~i~ArlVI~ADG~ 259 (549)
....+..+..... ++ ...+.+.+.+.+.+.|++++.++- +.++ .+++.+.|...+|+ ++++|.||-|+|.
T Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs 149 (466)
T PRK07845 72 DDGEARVDLPAVNAR-VKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA 149 (466)
T ss_pred cCcccccCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC
Confidence 0000000000000 00 011233455666677999987743 2222 45667778776775 7999999999998
Q ss_pred Ch
Q 008915 260 FS 261 (549)
Q Consensus 260 ~S 261 (549)
..
T Consensus 150 ~p 151 (466)
T PRK07845 150 SP 151 (466)
T ss_pred CC
Confidence 75
No 196
>PRK07846 mycothione reductase; Reviewed
Probab=97.70 E-value=0.00022 Score=77.85 Aligned_cols=37 Identities=35% Similarity=0.506 Sum_probs=28.2
Q ss_pred cccEEEEcchHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+|||||||||+|+..|+ ++..|.||+||||....+.+
T Consensus 1 ~yD~vVIG~G~~g~~aa-~~~~G~~V~lie~~~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILD-ERFADKRIAIVEKGTFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHH-HHHCCCeEEEEeCCCCCCcc
Confidence 49999999887555443 34569999999998776644
No 197
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.69 E-value=0.00063 Score=73.56 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=35.6
Q ss_pred EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 221 ~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+|+.+++|++|..+++++.|.+++|+++.||.||.|.-..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 7999999999999888988888888899999999987643
No 198
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=6.3e-05 Score=81.29 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=78.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CCCccccCC-----HH-HHHHHHHcCCCCcccchhhhhhccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWNIS-----RK-ELLELVESGILVEDDIDEATATKFNP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~~r~~~IS-----~~-~l~~L~~lGl~~~~eie~~i~~~~~~ 181 (549)
+||||||||| +|+-+|++.||.|.+++|+=-+... +... +|-+ .+ -+.+.+.||=. +-..+ + .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~ms-CNPaIGG~~KG~lvrEIDALGG~----Mg~~~--D--~ 74 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMS-CNPAIGGPGKGHLVREIDALGGL----MGKAA--D--K 74 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecc-cccccCCcccceeEEeehhccch----HHHhh--h--h
Confidence 5999999988 7999999999999999999755321 1100 1111 10 01122222210 00000 0 0
Q ss_pred Cccccc--C--Ccc-ccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEE
Q 008915 182 NRCGFE--G--KGE-IWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENA--AVLLLAEGKILSSHLI 253 (549)
Q Consensus 182 ~~i~f~--~--~~~-l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlV 253 (549)
..+.|. + +.+ ++.+ -..+|+....+++.+.+..... +++ ...|+++..+++. +-|.+++|..+.|+.|
T Consensus 75 ~~IQ~r~LN~sKGPAVra~---RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aV 150 (621)
T COG0445 75 AGIQFRMLNSSKGPAVRAP---RAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAV 150 (621)
T ss_pred cCCchhhccCCCcchhcch---hhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEE
Confidence 111110 0 111 1111 1235666666777777766544 555 4567788775553 4467778999999999
Q ss_pred EEccCCC
Q 008915 254 IDAMGNF 260 (549)
Q Consensus 254 I~ADG~~ 260 (549)
|-++|.+
T Consensus 151 VlTTGTF 157 (621)
T COG0445 151 VLTTGTF 157 (621)
T ss_pred EEeeccc
Confidence 9999976
No 199
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.65 E-value=3.8e-05 Score=80.64 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=74.4
Q ss_pred cccEEEEc-chHHHHHHHHHHhCC-CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCC-Ccccc
Q 008915 110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF 186 (549)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LAr~G-lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~-~~i~f 186 (549)
.||+|+|| ||.++++|++|...+ ++++.+||.+...-+.++-+....++. -. +++... -.+| ...+|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~f-----l~Dlvt-~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SF-----LKDLVT-LRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----T-----TSSSST-TT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----cc-----ccccCc-CcCCCCcccH
Confidence 59999999 667999999998765 999999998765443333222221110 00 111110 0111 11122
Q ss_pred cC----Cccccccccc-cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEEEc----CCcEEEcCEE
Q 008915 187 EG----KGEIWVEDIL-NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI 253 (549)
Q Consensus 187 ~~----~~~l~~~~~l-~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~----dG~~i~ArlV 253 (549)
.+ ...+..-.-. ..-..+..+.+.|...+.+.+..+..+++|++|...++ .+.|++. +++++.||-|
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v 151 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV 151 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence 11 1111100000 12256777888887777666766999999999987654 4788873 2458999999
Q ss_pred EEccCCC
Q 008915 254 IDAMGNF 260 (549)
Q Consensus 254 I~ADG~~ 260 (549)
|-|.|..
T Consensus 152 Vla~G~~ 158 (341)
T PF13434_consen 152 VLATGGQ 158 (341)
T ss_dssp EE----E
T ss_pred EECcCCC
Confidence 9999933
No 200
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.62 E-value=4.6e-05 Score=72.82 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=66.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
|||||||| +|+++|..|++.|++|+|+|+.+...... ..++.. .+ ... .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~-~~~~~~---~~--------------~~~------------~ 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS-GCIPSP---LL--------------VEI------------A 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH-SHHHHH---HH--------------HHH------------H
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc-cccccc---cc--------------ccc------------c
Confidence 79999976 58889999999999999998765311000 000000 00 000 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-----EEE---EcCCcEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-----~V~---~~dG~~i~ArlVI~ADG~~S 261 (549)
. .... ... ..+. .+.+++...+++++.++++.+++.....+ .+. ..++.++.++.||.|+|..+
T Consensus 51 ~--~~~~---~~~-~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 51 P--HRHE---FLP-ARLF-KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp H--HHHH---HHH-HHHG-HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred c--cccc---ccc-cccc-ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 0 0000 000 0000 33444555678998889999998877642 232 12355899999999999654
No 201
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.60 E-value=0.00018 Score=78.63 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
||||||||| .|.++|..++++|++|+||||....+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence 799999976 588888899999999999999876664
No 202
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00076 Score=71.86 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=39.9
Q ss_pred HHHHHHHh-cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 210 IVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 210 ~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
.|.+++.+ .+..|..+.+|..|.+++++|+|++.+..+++||++|.+-
T Consensus 210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~ti 258 (450)
T COG1231 210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTI 258 (450)
T ss_pred HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEec
Confidence 45555544 4679999999999999999999999775689999999764
No 203
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.59 E-value=0.00065 Score=81.06 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=67.8
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..+||+||||| +|+++|..+++.|++|+|+|+.+.++.. +.. ... ...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~-------------------------~~~--~~~ 210 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLS-------------------------EAE--TID 210 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eec-------------------------ccc--ccC
Confidence 36899999965 6999999999999999999998654310 000 000 000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEE-E--------cC---C--cEEEcCE
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLL-L--------AE---G--KILSSHL 252 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~-~--------~d---G--~~i~Arl 252 (549)
..+...+...+.+++.+.+ ++++.+++|.++..+..-..+. . .. + .+++++-
T Consensus 211 -------------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~ 277 (985)
T TIGR01372 211 -------------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR 277 (985)
T ss_pred -------------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence 0122334444666666664 7999999998874321111111 0 00 1 1689999
Q ss_pred EEEccCCCh
Q 008915 253 IIDAMGNFS 261 (549)
Q Consensus 253 VI~ADG~~S 261 (549)
||-|+|..-
T Consensus 278 VILATGa~~ 286 (985)
T TIGR01372 278 VVLATGAHE 286 (985)
T ss_pred EEEcCCCCC
Confidence 999999863
No 204
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.59 E-value=0.00072 Score=72.39 Aligned_cols=96 Identities=17% Similarity=0.290 Sum_probs=72.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+.+- . ..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~---------~~------------ 183 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVM---------------------G---------RN------------ 183 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch---------------------h---------hh------------
Confidence 59999976 59999999999999999999764210 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
. ...+.+.+.+.+.+.|++++.+++++++.. ++.+.+.+++|+++.|++||.|.|....
T Consensus 184 -----------~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 184 -----------A-PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred -----------c-CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 0 012234455666778999999999999865 5567778888889999999999998654
No 205
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.58 E-value=0.00049 Score=73.92 Aligned_cols=147 Identities=16% Similarity=0.271 Sum_probs=84.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-------CCH------HHHHHHH-HcCCCCcccchhhhh
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISR------KELLELV-ESGILVEDDIDEATA 176 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-------IS~------~~l~~L~-~lGl~~~~eie~~i~ 176 (549)
||+|||+| +|+++|+.|++. ++|+||-|.+.......|+ ++. .....|. --|+-++..++.++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 99999976 599999999998 9999999998764222221 111 1111221 113332211111110
Q ss_pred hcc------CCCcccccCCc---------------c-ccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEE
Q 008915 177 TKF------NPNRCGFEGKG---------------E-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICT 233 (549)
Q Consensus 177 ~~~------~~~~i~f~~~~---------------~-l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~ 233 (549)
... -...+.|+... . ++..+. --..+...|.+++++ .++++++++.+.++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~-----TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~ 162 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADA-----TGKEIMTALLKKVRNRPNITVLEGAEALDLII 162 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCC-----ccHHHHHHHHHHHhcCCCcEEEecchhhhhhh
Confidence 000 00112222111 0 111111 113567788888887 4779999999999998
Q ss_pred ECC-EE---EEEEcCC--cEEEcCEEEEccCCChHHH
Q 008915 234 YEN-AA---VLLLAEG--KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 234 ~~d-gv---~V~~~dG--~~i~ArlVI~ADG~~S~vr 264 (549)
+++ ++ .+...++ .+++|+.||-|+|.-+.+=
T Consensus 163 ~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 163 EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 888 33 3332223 4799999999999887654
No 206
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00012 Score=74.87 Aligned_cols=110 Identities=23% Similarity=0.278 Sum_probs=75.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|.++|...||+|+|.-|+-. .|.+. .|+.++ ||.+|...
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae-rfGGQ------------vldT~~------IENfIsv~---------- 261 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-RFGGQ------------VLDTMG------IENFISVP---------- 261 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhh-hhCCe------------eccccc------hhheeccc----------
Confidence 5999999965 699999999999999977642 23331 122222 33332211
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---CCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+ +-.+|-..|.++.++..+++..-.+.+.+... ++-..|++++|..+++|-||-++|+.
T Consensus 262 ----~t--------eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 262 ----ET--------EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred ----cc--------cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 11 11356777888888888877777677776652 44678999999999999999999975
No 207
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.54 E-value=0.0011 Score=72.20 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=75.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... ..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------- 213 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL---------------------SF---------------------- 213 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------Cc----------------------
Confidence 59999976 59999999999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+| ..+.+.|.+.+++.|++++.+++++++..+++++.+++++|+++.++.||.|.|.....
T Consensus 214 -----------~d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 214 -----------LD-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 00 11234455666678999999999999988777888888778899999999999988654
No 208
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.54 E-value=7.6e-05 Score=81.01 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEEEEccCCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
|-+.|.+.++..|++++.+++|++|..++++ +.|++++|++++||.||......
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 4455666667789999999999999887654 45777789999999999855554
No 209
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.51 E-value=8.7e-05 Score=81.79 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHHHHHh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQI 267 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~vrrql 267 (549)
.+.+.|.+.+++.|++++.+++|++|..+++. ..|.+++|++++|+.||.|.|....+.+.+
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 46678888899999999999999999877654 346677888899999999999887776544
No 210
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.48 E-value=0.0011 Score=73.02 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=28.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
+||||||||| .|..+|..+++.|.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999976 5778888999999999999974
No 211
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.47 E-value=0.00082 Score=74.05 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=27.5
Q ss_pred cccEEEEcchH-HHHHHHHHHhC-CCcEEEEccC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFK-GLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~-GlrVlLIEr~ 141 (549)
+|||||||||+ |..+|..+|++ |.+|+||||.
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 69999999775 66677799996 9999999984
No 212
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.45 E-value=0.00016 Score=57.61 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=26.8
Q ss_pred EEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 115 VCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 115 IVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
||||| .|+++|..|+++|++|+|+||+..++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 78976 59999999999999999999998765
No 213
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.41 E-value=0.00012 Score=74.75 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=27.5
Q ss_pred ccEEEEcchH-HHHHHHHHHhCC-CcEEEEccCCC
Q 008915 111 FDVIVCGGTL-GIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
||+||||+|+ |+++|..|++.| .+|+|||+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 8999999765 778899999997 79999999875
No 214
>PRK14727 putative mercuric reductase; Provisional
Probab=97.41 E-value=0.0013 Score=72.33 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=31.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~ 145 (549)
.+||||||||| .|..+|..|+++|.+|+||||. ...+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG 53 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG 53 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence 36999999976 5888888999999999999997 4444
No 215
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.40 E-value=0.0015 Score=72.29 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
+||||||||| +|.++|..++++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 6999999975 5888888999999999999973
No 216
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.39 E-value=0.0013 Score=74.74 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEccC--CCCCC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERN--TLKGR 146 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~--~~~~~ 146 (549)
+.+|||||||||+ |..+|..+++.|.+|+|||+. ...+.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGt 155 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGT 155 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccc
Confidence 3479999999765 667777999999999999975 44553
No 217
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.33 E-value=0.014 Score=60.30 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=54.4
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChHH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
..+++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+| +++|+.||.|+|..|+-
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 3579999999999999999999999999999998777654 565555 79999999999998863
No 218
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.33 E-value=0.0028 Score=69.27 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=73.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... .. +
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~-----------------~---- 211 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------------------PG-----------------E---- 211 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------------------Cc-----------------C----
Confidence 58999976 58889999999999999999864210 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.++ +++.++.||-|.|.....
T Consensus 212 ------------~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 212 ------------D-KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ------------C-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 0 11223445566678999999999999988777887777665 679999999999987653
No 219
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.31 E-value=0.0018 Score=70.53 Aligned_cols=38 Identities=37% Similarity=0.553 Sum_probs=32.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~~~ 147 (549)
+||+||+||| .|-.+|..+|+.|.+|+|+|+. ...+.+
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtC 43 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTC 43 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceE
Confidence 7999999976 5777888999999999999999 566644
No 220
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.31 E-value=0.0023 Score=69.89 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=30.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+||||||| .|.++|..+++.|.+|+||||....+.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccC
Confidence 69999976 5777888999999999999998776643
No 221
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.29 E-value=0.00064 Score=80.37 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=62.6
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
..+|+|||| |+|+++|..|+++|++|+|+|+...++ |++. |.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G------------------G~l~-----------yG-------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG------------------GVLR-----------YG-------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC------------------ceEE-----------cc--------
Confidence 478999995 579999999999999999999876433 1110 10
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.|+ +..+. .+.+...+.+++.|+++..++.+ +..+++++......|.||-|.|+..
T Consensus 349 -----IP~---~rlp~-~vi~~~i~~l~~~Gv~f~~n~~v--------G~dit~~~l~~~~yDAV~LAtGA~~ 404 (944)
T PRK12779 349 -----IPE---FRLPN-QLIDDVVEKIKLLGGRFVKNFVV--------GKTATLEDLKAAGFWKIFVGTGAGL 404 (944)
T ss_pred -----CCC---CcChH-HHHHHHHHHHHhhcCeEEEeEEe--------ccEEeHHHhccccCCEEEEeCCCCC
Confidence 000 00111 22233345666779998887654 2234554444456899999999863
No 222
>PRK06116 glutathione reductase; Validated
Probab=97.27 E-value=0.0034 Score=68.39 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=73.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.+- . .+
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~----------~~----------- 206 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL---------------------R----------GF----------- 206 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc---------------------c----------cc-----------
Confidence 58999976 59889999999999999999764210 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+.+.+.+.+++.|++++.+++++++..++++ +.|.+.+|+++.++.||.|.|.....
T Consensus 207 ------------~-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 ------------D-PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred ------------C-HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 0 012234555667789999999999999876665 77777788899999999999987654
No 223
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.27 E-value=0.0018 Score=70.32 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.||||||| +|+++|..|++.| .+|+|||+.+......+ ++. .+...
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~--------------~~~-----------~~~~~------ 50 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC--------------GLP-----------YFVGG------ 50 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC--------------CCc-----------eEecc------
Confidence 58999976 5888888998874 58999999864321000 000 00000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-CCcEEE--cCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-dG~~i~--ArlVI~ADG~~S 261 (549)
.. -++..+.....+.+.+.|++++.+++|++++.++..+.+... ++++++ +|.||-|+|...
T Consensus 51 ---~~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 51 ---FF--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred ---cc--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 00 000111111223344568899999999999887777766542 355666 999999999864
No 224
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.18 E-value=0.0053 Score=67.26 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=74.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++|+.+... ..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------- 215 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL---------------------PG---------------------- 215 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC---------------------CC----------------------
Confidence 58999976 59989999999999999999754210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+...+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|.....
T Consensus 216 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 216 -----------ED-ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -----------CC-HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 00 01223455566678999999999999987777888888788899999999999987664
No 225
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.17 E-value=0.00037 Score=76.76 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCC-----cEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG-----~~i~ArlVI~ADG~~ 260 (549)
.|-+.|.+.+++.|++|+.+++|++|..+++.+ .|.+.++ +++.||.||-+.-..
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 466778888888899999999999999887743 2333333 579999999887653
No 226
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.16 E-value=0.019 Score=60.93 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=56.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+...|.+.+.+ |++++++++|++++.+++++.|++.+|.+++|+.||.|.|.+|.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 357999999999999988 99999999999999888888888878878999999999999985
No 227
>PLN02507 glutathione reductase
Probab=97.14 E-value=0.0062 Score=67.37 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=73.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+++.+.+-. .
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~--------------------------------------~----- 241 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR--------------------------------------G----- 241 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc--------------------------------------c-----
Confidence 58999976 588888889999999999987542100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.+|+++.++.||-|.|.....
T Consensus 242 -----------~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 242 -----------FD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 00 11233445566678999999999999987777888887778889999999999987654
No 228
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.13 E-value=0.0061 Score=66.36 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=72.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..- . .
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~- 204 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------------------R---------------------G- 204 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------------------c---------------------c-
Confidence 48999976 58888989999999999998754210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|.....
T Consensus 205 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 205 -----------FD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 00 11223445566678999999999999987777777887778899999999999987554
No 229
>PRK12831 putative oxidoreductase; Provisional
Probab=97.12 E-value=0.001 Score=72.89 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=31.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..||+||||| +|+++|..|+++|++|+|+|+...++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 5899999965 69999999999999999999876443
No 230
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0011 Score=70.51 Aligned_cols=138 Identities=21% Similarity=0.287 Sum_probs=73.2
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC-CCCCcc----ccCCHH----HHHHHHHcCCCCcccchhhhhh
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQE----WNISRK----ELLELVESGILVEDDIDEATAT 177 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~-~~~~r~----~~IS~~----~l~~L~~lGl~~~~eie~~i~~ 177 (549)
...||||||||| +|+-+|++.||.|-+.+|+-.+-. .+...| .+|..+ |+..|. |+ ...
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl---------~~r 94 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GL---------CSR 94 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--ch---------Hhh
Confidence 347999999988 799999999999999999976532 111100 012111 111111 11 110
Q ss_pred ccCCCcccccC-----CccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCE------EEEEEcCC
Q 008915 178 KFNPNRCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA------AVLLLAEG 245 (549)
Q Consensus 178 ~~~~~~i~f~~-----~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg------v~V~~~dG 245 (549)
-.....+.|.- +..+|.+ -..+|+......+.+.+... ..+|+++ .|.++...+.. .-|.+.||
T Consensus 95 vcD~s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dg 170 (679)
T KOG2311|consen 95 VCDQSGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDG 170 (679)
T ss_pred hhhhhhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecC
Confidence 00001111110 1112221 12356655555555555443 3366655 45555543221 12455689
Q ss_pred cEEEcCEEEEccCCC
Q 008915 246 KILSSHLIIDAMGNF 260 (549)
Q Consensus 246 ~~i~ArlVI~ADG~~ 260 (549)
..+.|+-||--+|.+
T Consensus 171 t~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 171 TVVYAESVILTTGTF 185 (679)
T ss_pred cEeccceEEEeeccc
Confidence 999999999999976
No 231
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.09 E-value=0.0027 Score=66.94 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 213 KRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 213 ~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+.+.+.|++++.+ +|++++.+.. +|.+++|++++.|.||-|+|...
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 3444568888765 7888876655 56667888899999999999765
No 232
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.09 E-value=0.0069 Score=66.07 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=73.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.+-. .
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~------------ 204 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-------------------------------S------------ 204 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-------------------------------c------------
Confidence 58999987 599999999999999999997642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCC-cEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG-~~i~ArlVI~ADG~~S~vr 264 (549)
+| ..+.+.+.+.+.+.|++++.++.++++..++++ +.+.+++| +++.++.||-|.|......
T Consensus 205 -----------~d-~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 205 -----------FD-SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 00 112344556667789999999999999876554 66777677 5799999999999886643
No 233
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.08 E-value=0.0075 Score=65.42 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=71.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- .. .
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------~ 196 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL---------------------PR---------------------E 196 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC---------------------CC---------------------C
Confidence 59999976 59999999999999999999864210 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+...+.+.+++.|++++.+++++++..+++.+.+.. +++++.++.||-|.|.....
T Consensus 197 ------------~-~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 197 ------------E-PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred ------------C-HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 0 01223345566678999999999999987666666654 56789999999999987653
No 234
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.07 E-value=0.0068 Score=66.35 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=71.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+..- +.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~~---------------------- 210 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------------------PN---------------------- 210 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------Cc----------------------
Confidence 58999976 59999999999999999998654100 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc--CC--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--dG--~~i~ArlVI~ADG~~S~v 263 (549)
.| ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+. +| +++.++.||.|.|....+
T Consensus 211 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 211 -----------ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 00 112234556667789999999999999876666666554 56 379999999999987654
No 235
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.06 E-value=0.0027 Score=67.91 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=67.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.+||||||| +|+.+|..|+++|. +|+|||+.+.....+. .++.. .+ ... .
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~~~---~~---------------~~~-----~--- 56 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLSKS---ML---------------LED-----S--- 56 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCCHH---HH---------------CCC-----C---
Confidence 479999976 58888889999886 7999998765332221 12211 00 000 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..... ..+. +...+.+++++.++.|+.++.+.. .|.+++|+++.+|.||-|+|...
T Consensus 57 -~~~~~-------~~~~--------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 57 -PQLQQ-------VLPA--------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred -ccccc-------cCCH--------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 00000 0011 112346899999999999876543 45566788999999999999875
No 236
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.05 E-value=0.011 Score=65.67 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CC--EEE--EEEc-CCc-----EEEcCEEEEccCCC
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--AAV--LLLA-EGK-----ILSSHLIIDAMGNF 260 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~d--gv~--V~~~-dG~-----~i~ArlVI~ADG~~ 260 (549)
+.|..-|.+.+++.|++++.+++|+++..+ ++ +.+ |.+. +|+ ...+|+||.+.|..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 456678888999999999999999999875 22 322 3332 232 46899999999954
No 237
>PRK02106 choline dehydrogenase; Validated
Probab=97.03 E-value=0.00062 Score=76.34 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=30.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHh-CCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr~~~ 143 (549)
.+||+|||||| +|+.+|..||+ .|++|+|||+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 36999999976 59999999999 7999999999953
No 238
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.01 E-value=0.0043 Score=67.11 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
..+||||||| +|+.+|..|.+.+++|+|||+.+..-.. + .+.. +-.+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~------~----~l~~----------------~~~g~----- 58 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFT------P----LLPQ----------------TTTGT----- 58 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchh------h----hHHH----------------hcccC-----
Confidence 5789999988 5777777887778999999987642110 0 0000 00000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--------cCCcEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--------~dG~~i~ArlVI~ADG~~ 260 (549)
++.+.+..-+.+.+...+++++ ..+|++|+.++..+++.. ++|.++.+|.||-|.|..
T Consensus 59 -------------~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 59 -------------LEFRSICEPVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred -------------CChHHhHHHHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence 0011111123333444566654 468999988777776632 346689999999999987
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
.
T Consensus 125 ~ 125 (424)
T PTZ00318 125 P 125 (424)
T ss_pred c
Confidence 4
No 239
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.00 E-value=0.0087 Score=65.42 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=70.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.|+|+.+.+- .. +
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~-----------------~--- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------------------PR-----------------E--- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------------------Cc-----------------c---
Confidence 368999976 59999999999999999999764210 00 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---CcEEEcCEEEEccCCChHH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~~i~ArlVI~ADG~~S~v 263 (549)
++ .+...+.+.+.+.|++++.+++++++..+++.+.+++.+ ++++.++.||.|.|.....
T Consensus 206 -------------d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 206 -------------EP-EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred -------------CH-HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 00 112334455667799999999999998776666666532 3589999999999987654
No 240
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.00 E-value=0.006 Score=71.16 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=75.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| +|+-+|..|++.|.+|.|+|+.+.. + . ..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l---------------l------~---------~~------------ 179 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL---------------M------A---------KQ------------ 179 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch---------------h------h---------hh------------
Confidence 58999987 5999999999999999999975420 0 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql~ 268 (549)
++ ..+.+.+.+.+++.|++++.++.++++..++....|.++||+++.+|+||-|.|... .+++..+
T Consensus 180 -----------ld-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~g 247 (785)
T TIGR02374 180 -----------LD-QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAG 247 (785)
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcC
Confidence 00 012344555667789999999999998765545567788899999999999999763 3555554
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
+
T Consensus 248 l 248 (785)
T TIGR02374 248 I 248 (785)
T ss_pred C
Confidence 3
No 241
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.98 E-value=0.0092 Score=65.20 Aligned_cols=96 Identities=22% Similarity=0.380 Sum_probs=70.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . .
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------------------~---------------------~- 208 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------------------P---------------------G- 208 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------c---------------------c-
Confidence 59999976 59999999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.++++++++.++..+.+.. +| .++.+++||.|.|....+
T Consensus 209 -----------~d-~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 209 -----------ED-EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -----------cc-HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCccCC
Confidence 00 11233455666778999999999999977666555554 34 379999999999987664
No 242
>PRK06370 mercuric reductase; Validated
Probab=96.98 E-value=0.01 Score=64.82 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=70.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... . .
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~- 209 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL---------------------P---------------------R- 209 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC---------------------c---------------------c-
Confidence 58999976 59999999999999999999865210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc--C-CcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--E-GKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--d-G~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+. + +.++.+|.||-|.|.....
T Consensus 210 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 210 -----------ED-EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 00 012234455666789999999999999877766655542 3 4579999999999977543
No 243
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.97 E-value=0.00063 Score=75.08 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
.+-+.|.+.+++.|++++.+++|+++..++++ +.|.+++|++++|+.||.|.+....+.+.
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l 281 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRL 281 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHh
Confidence 46678888888889999999999999887765 45777788889999999988876655443
No 244
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.95 E-value=0.011 Score=64.77 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=71.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|||+.+..- . .
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------------------~---------------------~- 212 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------------------P---------------------G- 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------------------C---------------------C-
Confidence 48999976 59999999999999999999754210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---C--CcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---d--G~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+. + ++++.++.||.|.|.....
T Consensus 213 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 213 -----------TD-TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 00 012344556667789999999999999877677766553 2 3479999999999987543
No 245
>PRK07846 mycothione reductase; Reviewed
Probab=96.93 E-value=0.0078 Score=65.69 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=70.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+..- ..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------------------~~---------------------- 204 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------------------RH---------------------- 204 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------cc----------------------
Confidence 59999976 59999999999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+++ .+.+.+.+ +.+.+++++.+++++++..+++++.|.+.+|+++.++.||.|.|.....
T Consensus 205 -----------~d~-~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 205 -----------LDD-DISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred -----------cCH-HHHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 000 01122222 2245789999999999987777788888788899999999999987654
No 246
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.92 E-value=0.0028 Score=66.01 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=28.9
Q ss_pred CcccEEEEcchHHH-HHHHHHHhCCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGTLGI-FIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg~G~-~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.+|||+|+|||+|+ .+|+..|+.|++.+.||++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 37999999988755 566688999999999998543
No 247
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.89 E-value=0.011 Score=64.27 Aligned_cols=96 Identities=18% Similarity=0.321 Sum_probs=74.3
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
++||||| .|+=.|..+++.|.+|+|||+.+..- +.
T Consensus 176 lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL---------------------p~----------------------- 211 (454)
T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL---------------------PG----------------------- 211 (454)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC---------------------Cc-----------------------
Confidence 9999977 59999999999999999999875311 00
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc--EEEcCEEEEccCCChHH
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.| ..+-+.+.+.+++.|.+++.+++++.+...++++.+.+++|. +++|+.|+-|.|+.-.+
T Consensus 212 ----------~D-~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 212 ----------ED-PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred ----------CC-HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 01 123344556666667899999999999988887888887765 79999999999977543
No 248
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.89 E-value=0.001 Score=70.67 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=30.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||+||||| +|+++|..|++.|.+|+|||+....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 799999977 59999999999999999999976543
No 249
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.89 E-value=0.013 Score=64.46 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=71.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... . .
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 221 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL---------------------A---------------------A- 221 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC---------------------C---------------------c-
Confidence 68999976 58889999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC--C--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d--G--~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+++.+.|++++.+++++++..+++++.+.+.+ | .++.++.||-|.|.....
T Consensus 222 -----------~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 222 -----------AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -----------CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 01 1223344556667899999999999998877777777654 3 479999999999987654
No 250
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.88 E-value=0.013 Score=64.93 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=72.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+++..... -+
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-------------------~~------------------------ 220 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-------------------GF------------------------ 220 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-------------------cC------------------------
Confidence 68999976 59999999999999999998532100 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
| ..+.+.+.+.+++.|++++.++.++.+...++.+.|.+.+|+++.++.||-|.|......
T Consensus 221 ------------d-~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 221 ------------D-RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred ------------C-HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 0 012234455666789999999999998876666777777888899999999999876543
No 251
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.87 E-value=0.013 Score=64.27 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=69.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... +.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------------------~~---------------------- 218 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------------------PT---------------------- 218 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------------------Cc----------------------
Confidence 69999976 59999999999999999999865210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-ECCEEEE-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.+++++++.. .++++.+ .+.+|+ ++.++.||.|.|.....
T Consensus 219 -----------~~-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 219 -----------ED-AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 00 11223445566678999999999999975 2444443 344553 79999999999987544
No 252
>PLN02576 protoporphyrinogen oxidase
Probab=96.86 E-value=0.0012 Score=72.59 Aligned_cols=38 Identities=34% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhC-CCcEEEEccCCCCC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFK-GLRVAIVERNTLKG 145 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~-GlrVlLIEr~~~~~ 145 (549)
..++||+|||||+ |+++|..|+++ |++|+|+|+....+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4478999999875 99999999999 99999999987543
No 253
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.85 E-value=0.01 Score=69.73 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=74.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++||||| +|+-+|..|++.|.+|.|+|+.+.. + . ..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l---------------l------~---------~~------------ 184 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML---------------M------A---------EQ------------ 184 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc---------------h------h---------hh------------
Confidence 48999977 5999999999999999999975420 0 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC--EEEEEEcCCcEEEcCEEEEccCCChH--HHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP--VVKQ 266 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~~dG~~i~ArlVI~ADG~~S~--vrrq 266 (549)
+| ....+.+.+++.+.|++++.++.++++..+++ ...|.+++|+++.+++||-|.|.... +++.
T Consensus 185 -----------ld-~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~ 252 (847)
T PRK14989 185 -----------LD-QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ 252 (847)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence 00 11224456667778999999999999975432 34567778999999999999997654 4555
Q ss_pred hcC
Q 008915 267 IRS 269 (549)
Q Consensus 267 l~~ 269 (549)
.++
T Consensus 253 ~Gl 255 (847)
T PRK14989 253 CGL 255 (847)
T ss_pred cCc
Confidence 543
No 254
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.85 E-value=0.002 Score=74.81 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=30.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..||+||||| +|+++|..|+++|++|+|+|+...+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5799999965 6999999999999999999986543
No 255
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.82 E-value=0.013 Score=63.32 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=71.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+..- . .
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~---------------------~----------------------~ 175 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL---------------------N----------------------K 175 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC---------------------c----------------------c
Confidence 69999976 59889999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql~ 268 (549)
. .+ ..+.+.+.+.+.+.|++++.+++++++..++ .+ +.+.+|+++.++.||-|.|... .+.+.++
T Consensus 176 ~----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (427)
T TIGR03385 176 L----------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSELAKDSG 242 (427)
T ss_pred c----------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHHHHHhcC
Confidence 0 00 1123345556667899999999999986543 33 4556788999999999999864 3444444
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
.
T Consensus 243 l 243 (427)
T TIGR03385 243 L 243 (427)
T ss_pred c
Confidence 3
No 256
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.79 E-value=0.018 Score=62.51 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=70.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+..- + .
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 196 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------------------P---------------------R- 196 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------------------C---------------------C-
Confidence 58999976 58889999999999999998753100 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+++.+.+..+++ ++.++.||-|.|.....
T Consensus 197 -----------~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 197 -----------ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 11223455667778999999999999987777777766444 58999999999987654
No 257
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.76 E-value=0.027 Score=61.03 Aligned_cols=103 Identities=13% Similarity=0.189 Sum_probs=70.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++.+.. +. .
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~---------------------l~----------------------~ 187 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI---------------------LP----------------------D 187 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc---------------------Cc----------------------h
Confidence 59999976 5888999999999999999865310 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql~ 268 (549)
. ++ ..+.+.+.+.+++.|++++.+++++++..++....+.+ ++.++.++.||.|.|... .+.+..+
T Consensus 188 ~----------~~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~g 255 (444)
T PRK09564 188 S----------FD-KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTG 255 (444)
T ss_pred h----------cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcC
Confidence 0 00 12334566677788999999999999965433333444 455799999999999864 3444444
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
+
T Consensus 256 l 256 (444)
T PRK09564 256 L 256 (444)
T ss_pred c
Confidence 3
No 258
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.0016 Score=66.50 Aligned_cols=36 Identities=39% Similarity=0.574 Sum_probs=32.5
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.||.+|||+|+ |+.+|-.|+++|.+|++|||.+..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 38999999875 9999999999999999999998765
No 259
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.72 E-value=0.0091 Score=70.49 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4689999965 6999999999999999999987654
No 260
>PRK14694 putative mercuric reductase; Provisional
Probab=96.71 E-value=0.022 Score=62.36 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=69.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+++..... .
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------~---------------------- 215 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------Q---------------------- 215 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------C----------------------
Confidence 48999976 58889999999999999998532100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+++ .++.++.||-|.|.....
T Consensus 216 -----------~~-~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 216 -----------ED-PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred -----------CC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 00 0123345566677899999999999998766666666544 479999999999987654
No 261
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.71 E-value=0.011 Score=64.17 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=65.5
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.||||||| +|+.+|..|++. +.+|+|||+.+.....++ ++. .... +.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~--------------~lp------~~~~-----~~~---- 53 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC--------------ALP------YYIG-----EVV---- 53 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccC--------------Ccc------hhhc-----Ccc----
Confidence 59999987 577788888876 789999999865332111 000 0000 000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-Cc--EEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-G~--~i~ArlVI~ADG~~S 261 (549)
... ... ..+.+. .+ ....|++++.+++|++++.++..+.+...+ ++ ++++|.||-|+|...
T Consensus 54 ~~~---~~~--~~~~~~----~~---~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 54 EDR---KYA--LAYTPE----KF---YDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred CCH---HHc--ccCCHH----HH---HHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 000 000 001111 11 123588999999999998877776666432 23 478999999999875
No 262
>PRK14727 putative mercuric reductase; Provisional
Probab=96.71 E-value=0.02 Score=62.90 Aligned_cols=96 Identities=24% Similarity=0.231 Sum_probs=71.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+++..... .
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------~---------------------- 225 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------R---------------------- 225 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------c----------------------
Confidence 59999976 59999999999999999998632100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
.+ ..+.+.+.+.+.+.|++++.+++++.+..+++++.+..+++ ++.++.||-|.|......
T Consensus 226 -----------~d-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 226 -----------ED-PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred -----------ch-HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 00 01233455666778999999999999987777777776554 699999999999987653
No 263
>PRK07208 hypothetical protein; Provisional
Probab=96.69 E-value=0.0018 Score=70.96 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE--EEEc--CCc--EEEcCEEEEccCCCh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~--dG~--~i~ArlVI~ADG~~S 261 (549)
.|.+.|.+.+.+.|++|+.+++|++|..++++++ +... +|+ +++||.||-|.-...
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE 280 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence 3556777888888999999999999999877643 2222 343 699999998776543
No 264
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.67 E-value=0.021 Score=62.92 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 208 IEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+.+.+.+++.|++++.++.++++..++++ ..|.+.+|+++.++.||-|.|.....
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 345556677789999999999999876554 56677677889999999999987654
No 265
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.002 Score=65.87 Aligned_cols=34 Identities=44% Similarity=0.635 Sum_probs=30.9
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+|||+|+|||+ |+++|++|+++|.++.+|-++..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 69999999985 99999999999999999988753
No 266
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.66 E-value=0.022 Score=62.77 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=69.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+++....+ .
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----------------------~---------------------- 217 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR----------------------G---------------------- 217 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc----------------------c----------------------
Confidence 58999976 59999999999999999998631100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~ArlVI~ADG~~S~v 263 (549)
+| ..+.+.+.+.+++.|++++.++.++.+...++.+.|++.++ +++.++.||-|.|.....
T Consensus 218 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 218 -----------FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 00 01223445566678999999999999887666777776554 379999999999976544
No 267
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.65 E-value=0.015 Score=61.45 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=72.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-+|+|+||| +|+.+|..|+++|++|+++|+.+.+... .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~--------------------------~--------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ--------------------------L--------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh--------------------------h---------------
Confidence 589999965 6999999999999999999987642210 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE---EEEcCCcEEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. . ..+-+.+.+.+.+.|++++.++++.+++...+... +...++..+.+++++-+.|..-
T Consensus 176 ---~-----~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 176 ---L-----D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred ---h-----h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 0 0 12334555666778899999999999988766543 4555788899999999999765
No 268
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.64 E-value=0.0019 Score=71.73 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=31.2
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||||||+ +.|+++|..|+++|++|++||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 79999996 569999999999999999999987654
No 269
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.63 E-value=0.012 Score=62.67 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCCh-----------HHHHHhcC
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS-----------PVVKQIRS 269 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~S-----------~vrrql~~ 269 (549)
-....+.+.|..++++.|++++.+++|+++ +++++.|.+.++ .+++|+-||-|+|..| .+++++|.
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh 160 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV 160 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence 345678889999999999999999999998 444567776433 4799999999999876 67888876
Q ss_pred CC
Q 008915 270 GR 271 (549)
Q Consensus 270 ~~ 271 (549)
..
T Consensus 161 ~i 162 (376)
T TIGR03862 161 SV 162 (376)
T ss_pred cc
Confidence 53
No 270
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.63 E-value=0.0031 Score=75.21 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.0
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 479999996 569999999999999999999876443
No 271
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.63 E-value=0.008 Score=70.16 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=36.0
Q ss_pred HhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+.|++++.+++|+.++.+. ..|.+.+|+++.+|.||-|+|...
T Consensus 65 ~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence 45689999999999987654 356667888999999999999764
No 272
>PRK13748 putative mercuric reductase; Provisional
Probab=96.62 E-value=0.024 Score=63.56 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=69.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.||++..... . +
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~----------------------~-----------------~---- 308 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFF----------------------R-----------------E---- 308 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc----------------------c-----------------c----
Confidence 58999976 59999999999999999998642100 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
| ..+.+.+.+.+++.|++++.+++++++..+++.+.+.++++ ++.++.||-|.|.....
T Consensus 309 ------------d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 ------------D-PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred ------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 0 01223345556678999999999999987777777766544 69999999999987554
No 273
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.56 E-value=0.032 Score=60.94 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=68.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.+||+.+..- ..
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll---------------------~~---------------------- 207 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL---------------------RH---------------------- 207 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc---------------------cc----------------------
Confidence 58999976 58889999999999999999754210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+++ .+.+.+.+ +.+.+++++.+++++++..+++++.+++.+|+++.++.||.|.|.....
T Consensus 208 -----------~d~-~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 208 -----------LDE-DISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred -----------cCH-HHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 000 00111222 2235789999999999987777788887778889999999999977543
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.56 E-value=0.019 Score=60.88 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=64.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|||||||| +|+.+|..|.+. ..+|+||++.+.....+. .++ ..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~-~l~-------------------~~~~----------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP-DLS-------------------HVFS----------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC-cCc-------------------HHHh-----------
Confidence 489999976 577777788764 578999998764322111 010 0000
Q ss_pred CCccccccccccceeCHHHHHH-HHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~-~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. ..++..+.. ...+.+.+.|++++.+++|++++.+.. +|.+ ++.++.+|.||-|+|...
T Consensus 52 -~-----------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 52 -Q-----------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred -C-----------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 0 000111111 112233456899999999999876544 4444 567899999999999864
No 275
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.55 E-value=0.0025 Score=68.88 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEE-EcCCc--EEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL-LAEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~-~~dG~--~i~ArlVI~ADG~~ 260 (549)
++.+.|.+++++.|++++.+++|+++..+++++.+. ..+|+ +++||.||-|.|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 456778888888899999999999998877766543 33443 69999999999964
No 276
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.51 E-value=0.027 Score=61.80 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=69.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|||+.+..- ..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il---------------------~~---------------------- 212 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI---------------------PA---------------------- 212 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC---------------------Cc----------------------
Confidence 58999976 59999999999999999999765210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC--C--cEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d--G--~~i~ArlVI~ADG~~S~vr 264 (549)
.| ..+.+.+.+.+.+. ++++.+++++.+..+++++.+++.+ + +++.++.||-|.|......
T Consensus 213 -----------~d-~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 213 -----------AD-KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -----------CC-HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 00 01223344445555 7899999999998777777776643 2 3699999999999887653
No 277
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.51 E-value=0.0027 Score=69.10 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=36.0
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
++|+.+++|+.|..++++++|++++|++++||.||-|.-..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 57999999999999888999988888889999999987743
No 278
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.50 E-value=0.052 Score=58.11 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
...+-+.+.+.+.|+++++.|+|.++...++. ..|.+++|.++.||.||-|-|+.+.
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 45577888999999999999999999998875 3466678989999999999998864
No 279
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.46 E-value=0.026 Score=61.36 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=70.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+... + .+
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------~----------~~------------------------ 187 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--------K----------LM------------------------ 187 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--------h----------hc------------------------
Confidence 59999976 59999999999999999999764210 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH--HHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~--vrrql~ 268 (549)
+ ..+.+.+.+.+.+.|++++.+++++++.. + .|.+++|+++.+|.||-|.|.... ..+..+
T Consensus 188 ------------d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~g 250 (438)
T PRK13512 188 ------------D-ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSN 250 (438)
T ss_pred ------------C-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcC
Confidence 0 01223455566778999999999999852 2 455667888999999999997643 344443
No 280
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.46 E-value=0.0038 Score=67.06 Aligned_cols=62 Identities=29% Similarity=0.358 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCC--cEEEcCEEEEccCCC-hH-HHHHh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SP-VVKQI 267 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG--~~i~ArlVI~ADG~~-S~-vrrql 267 (549)
+|.+.|.+++++.|++++.+++|+++..++++++ |.++++ .+++||-+|-|+|.+ |. +.+++
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 4566677777777888888888888777766655 343444 368888888888888 65 44443
No 281
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.40 E-value=0.0095 Score=62.78 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=84.3
Q ss_pred cccEEEEc-chHHHHHHHHHHhC-CCcEEEEccCCCCCCCccccCCHHHHH--HHHHcCCCCcccchhhhhhccCC-Ccc
Q 008915 110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELL--ELVESGILVEDDIDEATATKFNP-NRC 184 (549)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LAr~-GlrVlLIEr~~~~~~~r~~~IS~~~l~--~L~~lGl~~~~eie~~i~~~~~~-~~i 184 (549)
.+|+|.|| ||.-+++|+.|..+ +++++.+||.+..+-+.+.-|...+++ .|.+| .+ -.+| ...
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDL--VT----------l~~PTs~y 72 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDL--VT----------LVDPTSPY 72 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhh--cc----------ccCCCCch
Confidence 69999999 88888889989876 589999999987654433333333332 22221 11 0111 111
Q ss_pred cccC----Cccccccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CC-EEE--EEEcCCcEEEcCEE
Q 008915 185 GFEG----KGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN-AAV--LLLAEGKILSSHLI 253 (549)
Q Consensus 185 ~f~~----~~~l~~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~d-gv~--V~~~dG~~i~ArlV 253 (549)
+|-+ ...++ ..+ +..+.|..+.+.|.-++... -.++.+++|++|..- .| .+. +.+.++.+++||=|
T Consensus 73 SFLNYL~~h~RLy--~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~l 149 (436)
T COG3486 73 SFLNYLHEHGRLY--EFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNL 149 (436)
T ss_pred HHHHHHHHcchHh--hhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeE
Confidence 1110 11111 111 23477888888888777665 588999999977432 22 233 44456779999999
Q ss_pred EEccCCCh
Q 008915 254 IDAMGNFS 261 (549)
Q Consensus 254 I~ADG~~S 261 (549)
|...|..-
T Consensus 150 Vlg~G~~P 157 (436)
T COG3486 150 VLGVGTQP 157 (436)
T ss_pred EEccCCCc
Confidence 99999764
No 282
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.33 E-value=0.0043 Score=68.41 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=31.3
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
...+|||||||+ |+++|..|...|++|+|+|.....
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 368999999775 999999999999999999976654
No 283
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0034 Score=70.13 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=31.2
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
..+||+||||+| .|+++|..|+..|++|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 347999999965 69999999999999999999984
No 284
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.27 E-value=0.022 Score=66.95 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=65.8
Q ss_pred cEEEEcch-HHHHHHHHHHhC----CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~----GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.||||||| +|..+|..|.++ +++|+||++.+.+...+. .++. ... .. .
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~-~L~~-------------------~~~-----~~-~- 57 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV-HLSS-------------------YFS-----HH-T- 57 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC-cchH-------------------hHc-----CC-C-
Confidence 69999976 577788788643 689999999876543221 1110 000 00 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
...+.. ...+.+.+.|++++.+++|++++.+. .+|.+++|+++++|.||-|+|...
T Consensus 58 --~~~l~~---------------~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 58 --AEELSL---------------VREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred --HHHccC---------------CCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence 000000 01122334689999999999886643 456667788999999999999764
No 285
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.26 E-value=0.0033 Score=70.07 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=28.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
|+|||||| +|+.+|..|++.| ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 89999976 5999999999998 79999999863
No 286
>PLN02785 Protein HOTHEAD
Probab=96.25 E-value=0.0042 Score=69.95 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=30.4
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
...||+|||||| +|+.+|..|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999976 69999999999 699999999974
No 287
>PTZ00058 glutathione reductase; Provisional
Probab=96.24 E-value=0.059 Score=60.48 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=67.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..- .
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il---------------------~----------------------- 274 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL---------------------R----------------------- 274 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc---------------------c-----------------------
Confidence 48888876 48888888888899999998754100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCC-cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG-~~i~ArlVI~ADG~~S~v 263 (549)
.+| ..+.+.+.+.+++.|++++.++.+.++..+++ ++.+...++ +++.++.||-|.|....+
T Consensus 275 ----------~~d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 275 ----------KFD-ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred ----------cCC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 001 11223445566778999999999999986544 465555444 479999999999977543
No 288
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.24 E-value=0.0049 Score=68.42 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCC
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK 144 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~ 144 (549)
....||.|||||| +|+.+|+.|++. -++|+|||++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4457999999976 799999999986 7999999999765
No 289
>PLN02268 probable polyamine oxidase
Probab=96.21 E-value=0.0049 Score=66.63 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=36.1
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
.+.+++.+++|++|..++++++|++.+|++++||.||.|.
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~ 248 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV 248 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence 3568999999999999999999998888889999999996
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.13 E-value=0.041 Score=59.55 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+.+.+.+++.|++++.+++++++.. +. |.+++|+++.++++|-|.|..
T Consensus 231 ~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 231 RKYGQRRLRRLGVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHCCCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCCC
Confidence 34456667778999999999998853 43 456788899999999999954
No 291
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.062 Score=58.07 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=34.7
Q ss_pred EEEeCceEEEEEEE--CCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 221 ~v~~~t~v~~i~~~--~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
.....++++++... ..+..+...+|....|+.+|-|+|+.-+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 34556777777776 55677777889999999999999987665543
No 292
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.07 E-value=0.0064 Score=66.18 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCE-E-EEEEcCCc-----EEEcCEEEEccCCCh
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFS 261 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v-~V~~~dG~-----~i~ArlVI~ADG~~S 261 (549)
+-+.|.+.+.+.|++|+.+++|++|..++++ + .|.+.+|+ ++.||-||-|...+.
T Consensus 215 l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 215 LCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 3455666666779999999999999876555 3 25555554 799999999987643
No 293
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.07 E-value=0.0063 Score=62.36 Aligned_cols=34 Identities=41% Similarity=0.550 Sum_probs=30.6
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++||||||+|+ |+.+|+.||.+|.+|+++|....
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 69999999875 88999999999999999997754
No 294
>PLN02676 polyamine oxidase
Probab=96.02 E-value=0.0075 Score=66.49 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=37.5
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
..|+.+++|++|..++++|+|++++|++++||.||.|....
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence 57999999999999999999999999899999999999744
No 295
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.01 E-value=0.089 Score=57.36 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=67.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+... +.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------- 207 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL---------------------PL---------------------- 207 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC---------------------cc----------------------
Confidence 58999976 59999999999999999999864210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCC--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG--~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++. ++++.+++++++..+++ .++++..++ .++.++.||.|.|.....
T Consensus 208 -----------~d-~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 208 -----------ED-PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred -----------hh-HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 00 11223444556666 89999999999976554 455544333 479999999999976543
No 296
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.97 E-value=0.027 Score=56.86 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=43.0
Q ss_pred ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEE-EEEc---C-CcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~-V~~~---d-G~~i~ArlVI~ADG~~S~ 262 (549)
..|+|..|-+.+.+.+.+.| ++++.+ .|.++..+..++. +..+ + .....++.+|.++|-+++
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 35899999999999998876 577766 5677753332221 1111 1 346788899999999986
No 297
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.96 E-value=0.0085 Score=70.93 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||+||||| +|+++|..|+++|++|+|+|+.+.++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 5899999965 69999999999999999999886543
No 298
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.95 E-value=0.0079 Score=64.48 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
=+++||||| +|+++|+.||..|++|.|+||.+..+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 469999987 59999999999999999999998765
No 299
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.019 Score=58.88 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=59.4
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCCC--cccc----CCHHHH---HHHHHcCCCCcccc---hhhhhhc
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE--QEWN----ISRKEL---LELVESGILVEDDI---DEATATK 178 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~~--r~~~----IS~~~l---~~L~~lGl~~~~ei---e~~i~~~ 178 (549)
-|.|||||+ |+-+|+.+|++|++|.|.|-.+..... ..-+ ++.+++ ..-...|++.+ |+ .++|...
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~-EMR~lgSlii~~ 83 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKA-EMRLLGSLIIEA 83 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHH-HHHHhhhHHhhh
Confidence 488999985 888999999999999999976543211 1000 111111 11112233321 11 1111111
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEE
Q 008915 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSI 231 (549)
Q Consensus 179 ~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i 231 (549)
...-.+|..-.++|||+.|-+.+-+++.++.. +|+ ..+|+.+
T Consensus 84 ----------Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vi-reEvt~i 126 (439)
T COG1206 84 ----------ADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVI-REEVTEI 126 (439)
T ss_pred ----------hhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEE-ccccccC
Confidence 00111233334689999999999999988765 443 3345544
No 300
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0082 Score=65.15 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
-|+|+||| +|+++|..||.+|++|+|+|+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 38999987 59999999999999999999998865
No 301
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.88 E-value=0.0096 Score=64.40 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=28.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||+|-| .-+.+|++|++.|.+|+.+||+.+-+
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 47999999965 58999999999999999999998744
No 302
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.77 E-value=1.3 Score=49.25 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=56.3
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CC--cEEEcCEEEEccCCChH-HHHHhcC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRS 269 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG--~~i~ArlVI~ADG~~S~-vrrql~~ 269 (549)
..+|+..+...+.+.+.+.|++++.+++|+++..+++.+. |++. +| .+++|+.||-|.|.+|. +.+.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 3589999999999999999999999999999998777643 4442 34 27999999999999987 5544443
No 303
>PLN02546 glutathione reductase
Probab=95.75 E-value=0.11 Score=58.30 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=66.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+=+|..|++.|.+|.|+|+.+... .
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il---------------------~----------------------- 289 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL---------------------R----------------------- 289 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc---------------------c-----------------------
Confidence 58888876 47778888888888888888653100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
.++ ..+.+.+.+.+.+.|++++.+++++++..+++ .+.+.+.+++...++.||-|.|......
T Consensus 290 ----------~~d-~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 290 ----------GFD-EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred ----------ccC-HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 001 12234455666778999999999999976544 3555554454455899999999887653
No 304
>PLN02568 polyamine oxidase
Probab=95.67 E-value=0.013 Score=65.32 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
|.+.|.+.+. +..|+.+++|+.|..++++++|++++|++++||.||.+.=
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 4445544442 3479999999999999999999998898999999998764
No 305
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.61 E-value=0.028 Score=61.34 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=30.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
.+||+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5899999965 6999999999999999999997654
No 306
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.61 E-value=0.012 Score=64.54 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEEC--CE---E-EEEEcCC---cEEEcCEEEEccCCCh
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLLAEG---KILSSHLIIDAMGNFS 261 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg---v-~V~~~dG---~~i~ArlVI~ADG~~S 261 (549)
+.+.|.+.+++.|++|+.+++|++|..++ ++ + .|.+++| +++.||.||-|.....
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence 44557778888899999999999998764 22 2 2334433 5699999999999763
No 307
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.59 E-value=0.14 Score=57.67 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEE-----EEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-----LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-----~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+.|+++++++.++++..++++.++ ...+|+ .++|+-||-|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 457788888888889999999999999876443222 223454 68999999999988753
No 308
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.58 E-value=0.12 Score=53.54 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=71.4
Q ss_pred CCCcccEEEEcchHHHH-HHHHHHhCCCcEEEEccC-CCCCCC---------ccccCCHHH--HHHHHHcCCCCcccchh
Q 008915 107 AVGTFDVIVCGGTLGIF-IATALSFKGLRVAIVERN-TLKGRE---------QEWNISRKE--LLELVESGILVEDDIDE 173 (549)
Q Consensus 107 ~~~~yDVIIVGGg~G~~-~Aa~LAr~GlrVlLIEr~-~~~~~~---------r~~~IS~~~--l~~L~~lGl~~~~eie~ 173 (549)
...+||..|||||.|+. +|...|..|.+|.|+|-. ...+.+ --|+.+..+ ++.-.+-|+-..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~----- 91 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN----- 91 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc-----
Confidence 34479999999998554 555777889999999976 333321 235544221 111111111000
Q ss_pred hhhhccCCCcccccCCccccc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc--EEEc
Q 008915 174 ATATKFNPNRCGFEGKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSS 250 (549)
Q Consensus 174 ~i~~~~~~~~i~f~~~~~l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~--~i~A 250 (549)
....|+ -..+-. .+ .+ | .+|.......+..++++++++.. -..++..+.|...||+ .++|
T Consensus 92 --------~~~~fd-W~~ik~krd--ay-i--~RLngIY~~~L~k~~V~~i~G~a---~f~~~~~v~V~~~d~~~~~Yta 154 (478)
T KOG0405|consen 92 --------EEGSFD-WKVIKQKRD--AY-I--LRLNGIYKRNLAKAAVKLIEGRA---RFVSPGEVEVEVNDGTKIVYTA 154 (478)
T ss_pred --------cccCCc-HHHHHhhhh--HH-H--HHHHHHHHhhccccceeEEeeeE---EEcCCCceEEEecCCeeEEEec
Confidence 000110 000000 00 00 0 12334444445556777777642 1234567888887875 4899
Q ss_pred CEEEEccCCChH
Q 008915 251 HLIIDAMGNFSP 262 (549)
Q Consensus 251 rlVI~ADG~~S~ 262 (549)
+.+..|.|..-.
T Consensus 155 k~iLIAtGg~p~ 166 (478)
T KOG0405|consen 155 KHILIATGGRPI 166 (478)
T ss_pred ceEEEEeCCccC
Confidence 999999997643
No 309
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.45 E-value=0.16 Score=57.97 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=65.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|||+.+..- ..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll---------------------~~---------------------- 350 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL---------------------PL---------------------- 350 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc---------------------cc----------------------
Confidence 58999976 58888889999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEECCE--EEEEEcC-------C--------cEEEcCE
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL 252 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dg--v~V~~~d-------G--------~~i~Arl 252 (549)
+|+ .+.+.+.+.+ .+.|++++.++.|+++..++++ +.|.+.+ + +++.++.
T Consensus 351 -----------~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~ 418 (659)
T PTZ00153 351 -----------LDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS 418 (659)
T ss_pred -----------CCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence 011 1122223332 3578999999999999866543 5555421 1 2799999
Q ss_pred EEEccCCChHH
Q 008915 253 IIDAMGNFSPV 263 (549)
Q Consensus 253 VI~ADG~~S~v 263 (549)
||-|.|..-.+
T Consensus 419 VlvAtGr~Pnt 429 (659)
T PTZ00153 419 CLVATGRKPNT 429 (659)
T ss_pred EEEEECcccCC
Confidence 99999987543
No 310
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.44 E-value=0.024 Score=64.84 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.1
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+|||| ++|+++|..|++.|++|+|+|+.+.++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 479999996 569999999999999999999986543
No 311
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.36 E-value=0.019 Score=66.52 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=31.5
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
...||+|||||+ |+++|..|++.|++|+|+|+...+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 368999999775 888999999999999999998654
No 312
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.33 E-value=0.022 Score=62.50 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=31.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||+||||| +|+++|..|+++|++|+|+|+.+.++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 5799999965 69999999999999999999987553
No 313
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.32 E-value=0.021 Score=62.30 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=30.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|+++|++|+|+|+.+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 4789999976 6899999999999999999998654
No 314
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.31 E-value=0.066 Score=57.32 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc-EEEcCEEEEccCCC-hHHHHHh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNF-SPVVKQI 267 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~-~i~ArlVI~ADG~~-S~vrrql 267 (549)
.+.+...+.+.+.|++++.++.|++++ +++++ +++|. +|.|+.+|=|.|.. |++.+.+
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~--~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVT--PDGVT--LKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEE--EccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 455566677788899999999999985 45554 44565 59999999999965 5566654
No 315
>PLN02529 lysine-specific histone demethylase 1
Probab=95.29 E-value=0.021 Score=65.76 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
+..|+.+++|+.|..++++|+|+. ++++++||.||.+-
T Consensus 366 ~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV 403 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV 403 (738)
T ss_pred cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence 457999999999999999999876 55689999999765
No 316
>PRK10262 thioredoxin reductase; Provisional
Probab=95.28 E-value=0.16 Score=52.56 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=63.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------~- 184 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E- 184 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------C-
Confidence 68999987 588899999999999999997542100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcC----C--cEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE----G--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~d----G--~~i~ArlVI~ADG~~S 261 (549)
..+.+.+.+++++.|++++.++.++++..+++++ .|++.+ + +++.++.||-|.|...
T Consensus 185 --------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 185 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred --------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 0011333455566788999999999987654332 233332 1 3799999999988653
No 317
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.26 E-value=0.037 Score=60.69 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=31.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+||||| +|+++|..|+++|++|+++|+.+.++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 4799999965 69999999999999999999987543
No 318
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.025 Score=58.25 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=29.1
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEccC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
+.+||.||+|||. |+++|-..|..|.+|+++|--
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 4489999999886 777888999999999999943
No 319
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.16 E-value=0.033 Score=61.32 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=30.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHh--CCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSF--KGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr--~GlrVlLIEr~~~~~ 145 (549)
...|+|||| |+|+.+|..|++ .|++|.|+||.+.++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 478999996 568889989986 799999999998764
No 320
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.14 E-value=0.016 Score=61.67 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChHHHH
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~vrr 265 (549)
+-.++.+-++++|++|+.+.+|.+|..+++.+ -|.++||++++++.||-=.+.+-..-+
T Consensus 266 vs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~k 325 (561)
T KOG4254|consen 266 VSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEK 325 (561)
T ss_pred HHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHH
Confidence 34567778888999999999999998887543 377889999999999976665544433
No 321
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.04 E-value=0.1 Score=55.90 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=61.6
Q ss_pred ccEEEEcchH-HHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGTL-GIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
--|||+|||- |+.+|..|+++ +.+|+||||+.+--... .| -++.. +.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p----------lL-----------~eva~-----g~l--- 54 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP----------LL-----------YEVAT-----GTL--- 54 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch----------hh-----------hhhhc-----CCC---
Confidence 4599999995 77788899987 48999999987522100 01 00100 111
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+...+..-+.+-++..+ +++ ...+|++|+.+.. +|+++++..+..|.||-|.|...
T Consensus 55 ---------------~~~~i~~p~~~~~~~~~~v~~-~~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 55 ---------------SESEIAIPLRALLRKSGNVQF-VQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSET 111 (405)
T ss_pred ---------------ChhheeccHHHHhcccCceEE-EEEEEEEEcccCC--EEEeCCCccccccEEEEecCCcC
Confidence 00000111122233333 444 4557888877655 45565667899999999999874
No 322
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.97 E-value=0.24 Score=50.05 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=60.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|.-+|..|++.|.+|.++++.+... . .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------~------------------------------------~ 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------A------------------------------------E 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------c------------------------------------C
Confidence 379999976 58888999999999999998753100 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc---CC--cEEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---dG--~~i~ArlVI~ADG~~S 261 (549)
..+.+.+.+. |++++.++.++++..++.-..+.+. ++ +++.+|.||-|.|...
T Consensus 180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 0122334455 8899999999998765432223332 23 4799999999999654
No 323
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=94.83 E-value=0.039 Score=53.34 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=30.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~ 145 (549)
.-||||||+| +|+++|+..+++ .++|++||....|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 4699999966 699999988843 89999999987776
No 324
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.17 Score=49.52 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=73.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||| ||++-++|+.++|+-+|-+|+|-....+ |.++.. +.+..++|. | | .|.
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~------i~pGGQ-------LtTTT~veN-----f-P---GFP-- 64 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG------IAPGGQ-------LTTTTDVEN-----F-P---GFP-- 64 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC------cCCCce-------eeeeecccc-----C-C---CCC--
Confidence 4799999 6778899999999999999999543322 111100 001111111 1 0 111
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+ ++.-..|-+.++++....|.+++.. +|.+++....-+++.+ |.+.++|+-||-|+|+.
T Consensus 65 ------d----gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAs 123 (322)
T KOG0404|consen 65 ------D----GITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGAS 123 (322)
T ss_pred ------c----ccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccc
Confidence 1 1222356677788888888888654 5788877777777766 55679999999999975
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.83 E-value=0.24 Score=55.01 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=62.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... .
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~--------------------------------------------~ 389 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK--------------------------------------------A 389 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------h
Confidence 69999987 59999999999999999998643100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE-EEEcC---C--cEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~d---G--~~i~ArlVI~ADG~~S 261 (549)
...+.+.+.+ .|++++.++.++++..+++.+. |.+.+ + +++.++.||-|.|...
T Consensus 390 -----------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 390 -----------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred -----------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 0012233333 5889999999999876545543 55432 2 3799999999999654
No 326
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.76 E-value=0.052 Score=61.96 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+||||| +|+++|..|++.|++|+++|+.+.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 4689999965 69999999999999999999988654
No 327
>PLN02487 zeta-carotene desaturase
Probab=94.75 E-value=0.037 Score=62.13 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEEC--CE----EEEEEc---CCcEEEcCEEEEccCCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA----AVLLLA---EGKILSSHLIIDAMGNF 260 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg----v~V~~~---dG~~i~ArlVI~ADG~~ 260 (549)
|.+.+.+.+++.|++|+.+++|.++..+. ++ ..|++. +++++.||.||-|.+..
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 55667778888999999999999998873 33 224442 34479999999999976
No 328
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.68 E-value=0.15 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred cCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 386 AFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 386 ~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
..+++..+|-.-+-.||+. +|-|++
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~-~gcG~G 405 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIF-EGCGSG 405 (419)
T ss_pred ccccceEechhhcCCChHh-cCCCch
Confidence 3689999999999999985 444443
No 329
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.67 E-value=0.065 Score=60.21 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=30.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.-+|+|+|+ ++|+++|..|++.|++|+++|+.+..+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 357999995 569999999999999999999887543
No 330
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.58 E-value=0.045 Score=62.60 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=30.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|++.|++|+|+|+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4799999965 6999999999999999999998754
No 331
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.46 E-value=0.11 Score=53.20 Aligned_cols=50 Identities=30% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCcccEEEEcchH-HHHHHHHHHhC-C-CcEEEEccCCCCCCCccccCCHHH
Q 008915 107 AVGTFDVIVCGGTL-GIFIATALSFK-G-LRVAIVERNTLKGREQEWNISRKE 156 (549)
Q Consensus 107 ~~~~yDVIIVGGg~-G~~~Aa~LAr~-G-lrVlLIEr~~~~~~~r~~~IS~~~ 156 (549)
...+|.|+|||||. |+.+|+.+.++ | =+|.+||....--....|.+..+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgG 88 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGG 88 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccc
Confidence 34479999999986 77888888865 3 378888865432222345444443
No 332
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.39 E-value=0.32 Score=52.43 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=72.0
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
|+++||| +|+-.|+.|...+++|++|++.+.+- .+ +
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~---------------~~--l-------------------------- 252 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL---------------PR--L-------------------------- 252 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEccCccch---------------hh--h--------------------------
Confidence 8999988 69999999998899999998764211 00 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEEEEccCCChH
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.. ..+.+...+.+++.|++++.+|.+.++..+++| ..|.+.||+++.|++||-..|+.+.
T Consensus 253 -f~----------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 253 -FG----------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred -hh----------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 00 112334455666789999999999999888755 3466779999999999999997754
No 333
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.16 E-value=0.49 Score=48.73 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcC--CEEEeCceEEEEEEECCEEE-EEE--cCCc--EEEcCEEEEccCCChH
Q 008915 207 LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 207 L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~-V~~--~dG~--~i~ArlVI~ADG~~S~ 262 (549)
|...|.+.+.+.. +++..+++|+++..+++.|. |.. .+|+ .+.++-||-|+|..+-
T Consensus 145 L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 145 LSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 4444555554443 38899999999997766543 333 2344 6889999999998874
No 334
>PRK13984 putative oxidoreductase; Provisional
Probab=94.04 E-value=0.12 Score=58.55 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+|||+ ++|+++|..|+++|++|+|+|+.+.++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 578999996 469999999999999999999987653
No 335
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=94.01 E-value=0.058 Score=58.51 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhc
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~ 268 (549)
|.+.|.+++. ++++.+++|+.+..+..+..+...+|.++++|-||-+ +-...+.+.++
T Consensus 217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t-~p~~~l~~ll~ 274 (444)
T COG1232 217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIST-APLPELARLLG 274 (444)
T ss_pred HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEc-CCHHHHHHHcC
Confidence 4444554443 4599999999999987788888878888999999954 33334444443
No 336
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.00 E-value=0.079 Score=55.74 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=30.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+||||| +|+.+|..|++.|++|.++|+.+.++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 3689999975 69999999999999999999987643
No 337
>PLN02976 amine oxidase
Probab=93.99 E-value=0.066 Score=64.97 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=32.0
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
....+||+||||| .|+++|+.|++.|++|+|+|+...+
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 3445899999976 5888999999999999999987544
No 338
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.88 E-value=0.63 Score=48.96 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 209 ~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+.+.+.+.+.|++++.+++++++. ++ .|.+.+|+++.+++||-|.|...
T Consensus 195 ~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 195 RLVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCCh
Confidence 445566677899999999999874 33 45666788999999999999664
No 339
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.69 E-value=0.086 Score=58.16 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=30.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3699999965 6999999999999999999988754
No 340
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.65 E-value=0.077 Score=62.39 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=28.6
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
...|+|||| |+|+++|..|++.|++|+|+|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 468999995 56999999999999999999985
No 341
>PLN03000 amine oxidase
Probab=93.55 E-value=0.083 Score=61.61 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=31.3
Q ss_pred EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 221 ~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
.|+.++.|+.|...+++|.|++. +++++||.||.|-
T Consensus 392 ~I~Ln~~Vt~I~~~~dgV~V~~~-~~~~~AD~VIvTV 427 (881)
T PLN03000 392 PILYEKTVQTIRYGSNGVKVIAG-NQVYEGDMVLCTV 427 (881)
T ss_pred CcccCCcEEEEEECCCeEEEEEC-CcEEEeceEEEcC
Confidence 58899999999999999999874 4589999999776
No 342
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=93.39 E-value=14 Score=40.09 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=30.9
Q ss_pred cccEEEEcchH-HHHHHHHHHhC----CCcEEEEccCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFK----GLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~----GlrVlLIEr~~~~ 144 (549)
+.||+|||||+ |+++|..|+++ |++|+|+|+....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 47999999875 99999999998 9999999998754
No 343
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.25 E-value=0.13 Score=56.29 Aligned_cols=55 Identities=33% Similarity=0.382 Sum_probs=43.4
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCC---------CccccCCHHHHHHHHHcCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---------EQEWNISRKELLELVESGI 165 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~---------~r~~~IS~~~l~~L~~lGl 165 (549)
-.|.|||+ |+|+++|..|++.|+.|+++|+.+.++. .-.-.|....++.|.+.|+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCe
Confidence 57999995 6799999999999999999999987642 1112466678888888883
No 344
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.95 E-value=1 Score=49.17 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+||||| .|+-+|..|++.|.+|.++++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999987 59999999999999999998764
No 345
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.54 E-value=1.1 Score=48.89 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=26.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+||||| .|.-+|..|++.|. +|.++++..
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999987 59989999999998 899998753
No 346
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.50 E-value=0.94 Score=47.61 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCc-EEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.|+|+||| .|+-+|..|++.|.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999976 599999999989997 99998753
No 347
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.37 E-value=0.92 Score=50.44 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=61.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
+|+||||| .|.-+|..|+..|.+|.|+++.+.... .
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------~- 389 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------D- 389 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------c-
Confidence 69999987 599999999999999999986542100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S 261 (549)
+.+.+++.+ .|++++.++.++++..+++.+. |.+. +|+ ++.+|.|+-|.|...
T Consensus 390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 011122333 4789999999999976544433 4443 233 699999999988654
No 348
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.37 E-value=1.3 Score=46.50 Aligned_cols=129 Identities=19% Similarity=0.093 Sum_probs=67.8
Q ss_pred cccEEEEcchH-HHHHHHHHHhCC--CcEEEEccCCCCCCC------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKG--LRVAIVERNTLKGRE------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~G--lrVlLIEr~~~~~~~------r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~ 180 (549)
...|+|||||- ++-++..|.+++ .+|.+|=|.+..... .+| .++.-+..+..+.- +.+..+..+.
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~-f~P~~v~~f~~l~~----~~R~~~l~~~- 263 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEI-FSPEYVDYFYSLPD----EERRELLREQ- 263 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGG-GSHHHHHHHHTS-H----HHHHHHHHHT-
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhh-cCchhhhhhhcCCH----HHHHHHHHHh-
Confidence 57799999884 777888887766 489898887643211 011 33433333322210 0011111110
Q ss_pred CCcccccCCcccccccccc-ceeCHHHHHH---HHH-HHHHhc-CCEEEeCceEEEEEEECC-EEEEEEcC---C--cEE
Q 008915 181 PNRCGFEGKGEIWVEDILN-LGVSPAKLIE---IVK-KRFISL-GGVIFEGYSVSSICTYEN-AAVLLLAE---G--KIL 248 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~-~~V~~~~L~~---~L~-~~a~~~-G~~v~~~t~v~~i~~~~d-gv~V~~~d---G--~~i 248 (549)
...+ -+|+++.+.+ .|. +++... ...++.+++|+++...++ ++.+++.+ + .++
T Consensus 264 ---------------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~ 328 (341)
T PF13434_consen 264 ---------------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETL 328 (341)
T ss_dssp ---------------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEE
T ss_pred ---------------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEE
Confidence 0011 2456554432 222 233222 358999999999999885 88888864 2 379
Q ss_pred EcCEEEEccCC
Q 008915 249 SSHLIIDAMGN 259 (549)
Q Consensus 249 ~ArlVI~ADG~ 259 (549)
.+|.||.|+|.
T Consensus 329 ~~D~VilATGy 339 (341)
T PF13434_consen 329 EVDAVILATGY 339 (341)
T ss_dssp EESEEEE---E
T ss_pred ecCEEEEcCCc
Confidence 99999999995
No 349
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.22 E-value=0.29 Score=55.39 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=72.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
.+||||| +|+=+|..|...|++|.+++=.+. | ++. +
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------------l----------Mer----Q------------- 184 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------------L----------MER----Q------------- 184 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecch----------------H----------HHH----h-------------
Confidence 4788877 599999999999999999973321 0 000 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC--hHHHHHhcC
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF--SPVVKQIRS 269 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~--S~vrrql~~ 269 (549)
+|+ .=.+.|..++.+.|.+++.+...+.+...+.-..|.++||..+.|++||-|+|.. .-++++.++
T Consensus 185 ----------LD~-~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGl 253 (793)
T COG1251 185 ----------LDR-TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGL 253 (793)
T ss_pred ----------hhh-HHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCc
Confidence 000 0123456666777888888888877766444456888899999999999999975 456777655
Q ss_pred C
Q 008915 270 G 270 (549)
Q Consensus 270 ~ 270 (549)
.
T Consensus 254 a 254 (793)
T COG1251 254 A 254 (793)
T ss_pred C
Confidence 4
No 350
>PTZ00188 adrenodoxin reductase; Provisional
Probab=92.03 E-value=0.22 Score=54.69 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=29.3
Q ss_pred cccEEEEcc-hHHHHHHHHH-HhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATAL-SFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~L-Ar~GlrVlLIEr~~~~~ 145 (549)
..-|+|||| |+|+.+|..| ++.|++|.|+||.+.|+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 356999996 5688888865 56799999999998775
No 351
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=91.59 E-value=0.69 Score=51.03 Aligned_cols=35 Identities=40% Similarity=0.729 Sum_probs=31.6
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||||||||+ |+++|+.||++|++|+|+||+..++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 7999999886 8888889999999999999998764
No 352
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.59 E-value=0.96 Score=54.37 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=64.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
.|+|+||| .|+-+|..|++.|. .|.|+|+.+.. .
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~------------------------------------ 354 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------S------------------------------------ 354 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------h------------------------------------
Confidence 58899965 58889999999995 47888754210 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC--EEEEEEc--CCcEEEcCEEEEccCCChH--H
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLA--EGKILSSHLIIDAMGNFSP--V 263 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~~--dG~~i~ArlVI~ADG~~S~--v 263 (549)
..+.+++++.|++++.++.++.+..++. ++++... +++++.||.|+-+.|.... +
T Consensus 355 -------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 355 -------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred -------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 0022345667899999999988865433 2333321 3558999999999997654 5
Q ss_pred HHHhcCC
Q 008915 264 VKQIRSG 270 (549)
Q Consensus 264 rrql~~~ 270 (549)
.++++..
T Consensus 416 ~~~lg~~ 422 (985)
T TIGR01372 416 FSQRGGK 422 (985)
T ss_pred HHhcCCC
Confidence 5666543
No 353
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=91.56 E-value=0.2 Score=53.43 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.6
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEE--EEccCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVA--IVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVl--LIEr~~~ 143 (549)
.-+|+|||||+ |+++|+.|++++.+|. |+|..+-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 57899999885 9999999999988774 4998764
No 354
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.51 E-value=1.4 Score=48.30 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=32.3
Q ss_pred HHHHhcCCEEEeCceEEEEEEECCEEE-EEE-----cCC---------cEEEcCEEEEccCCC
Q 008915 213 KRFISLGGVIFEGYSVSSICTYENAAV-LLL-----AEG---------KILSSHLIIDAMGNF 260 (549)
Q Consensus 213 ~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-----~dG---------~~i~ArlVI~ADG~~ 260 (549)
+.+.+.|++++.++.++++..+++.++ |++ .+| .++.+|.||-|.|..
T Consensus 337 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~ 399 (471)
T PRK12810 337 SNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399 (471)
T ss_pred HHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcC
Confidence 445567999999999999865444443 322 122 368888888888844
No 355
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=0.23 Score=52.45 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=32.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..|||||+|-| +=+.+|++-+|.|.+|+-+|++++-+
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYG 44 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccC
Confidence 47999999955 57788888899999999999999865
No 356
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.25 Score=51.67 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=31.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.|||||+|-| .=+..+++|+..|.+|++|||+..-+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 6999999955 58899999999999999999998743
No 357
>PRK12831 putative oxidoreductase; Provisional
Probab=91.11 E-value=1.9 Score=47.23 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=27.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+||||| .|+-+|..|++.|.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999987 59889999999999999998754
No 358
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.89 E-value=0.32 Score=44.27 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=26.6
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|+|+ .+|+..|+.|++.|++|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689995 579999999999999999998764
No 359
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=90.70 E-value=1.1 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=29.5
Q ss_pred EEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 113 VIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 113 VIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||||||+ |+++|+.||++|++|+|+||+..++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 68999885 8888889999999999999998765
No 360
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.63 E-value=0.3 Score=45.33 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=26.7
Q ss_pred EEEEcchH-HHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGTL-GIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|||. |.++|..|+++|++|.|..|.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 78999875 9999999999999999998764
No 361
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.14 Score=54.08 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=35.1
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCChHH
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~S~v 263 (549)
.|++...+.++..+....++..+.+++| +..+++-+| ||+.--+-
T Consensus 245 yGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi-~dpSY~~~ 290 (440)
T KOG1439|consen 245 YGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVI-CDPSYFPQ 290 (440)
T ss_pred cCceeecCCceeeeeccCCccEEEEecCCceeecceEE-ecCccchH
Confidence 4889999999999998777888888764 467888555 88866543
No 362
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.16 E-value=0.35 Score=46.04 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.4
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|+| +|...|..+|+.|++|.|+|+.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899965 79999999999999999999864
No 363
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.42 E-value=0.81 Score=46.86 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.6
Q ss_pred EEEEcc-h-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG-T-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG-g-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| | +|+-++..|.++|++|+++|.-.
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~ 34 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLS 34 (329)
T ss_pred EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Confidence 789996 7 79999999999999999999544
No 364
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.14 E-value=2.1 Score=45.26 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=40.2
Q ss_pred HhcCCEEEeCceEEEEEEECC-EEEEEEcC---Cc--EEEcCEEEEccCCChHHHHHhc
Q 008915 216 ISLGGVIFEGYSVSSICTYEN-AAVLLLAE---GK--ILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~~~d-gv~V~~~d---G~--~i~ArlVI~ADG~~S~vrrql~ 268 (549)
...|.++..+|.|+.++.+.| .+.|++.+ ++ +++||.+..|-|++ |.-+-|+
T Consensus 263 ~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t~GLg 320 (506)
T KOG1335|consen 263 QKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFTEGLG 320 (506)
T ss_pred HhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccccCCC
Confidence 346889999999999999888 56666653 33 79999999999976 4444443
No 365
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.12 E-value=0.51 Score=45.78 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=28.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+|+| ||+|+..|..|++.|+ ++.|+|...
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5699999 6799999999999999 599999764
No 366
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=88.33 E-value=0.41 Score=48.63 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=25.1
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|+| ||+|=++ |.+||++|.||+|||-.+-
T Consensus 4 i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 56779 8887664 7788999999999997654
No 367
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.17 E-value=0.52 Score=50.06 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=56.4
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC--ChHHHHH
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN--FSPVVKQ 266 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~--~S~vrrq 266 (549)
|-|+.|-++-.++.+..|+.++.+..|.++......+.+.++||.+++.|+||.|.|- +|-++..
T Consensus 390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 3456777888889998999999999999999988899999999999999999999994 5666654
No 368
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.09 E-value=0.86 Score=45.22 Aligned_cols=50 Identities=26% Similarity=0.415 Sum_probs=35.9
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESG 164 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lG 164 (549)
--|+|+| ||+|+-++-+|||.|+ +..|||.....-. |+.+.-...+..+|
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT----N~NRQi~A~~~~iG 82 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT----NTNRQIHALLGDIG 82 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc----ccchhhHhhhhhcc
Confidence 4599999 9999999999999997 6889998765322 34444333444444
No 369
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=87.86 E-value=0.84 Score=49.72 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
-+|+||||| .|+-+|..|++.|.+|.|+|+.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 369999976 5999999999999999999987643
No 370
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.79 E-value=0.62 Score=50.78 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=29.0
Q ss_pred EEEEc-chHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|.|+| |+.|.++|..|+++|++|.+.|+...+.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~ 36 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE 36 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 78999 6789999999999999999999887543
No 371
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.75 E-value=0.49 Score=45.31 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=23.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|-| +|+.+|+.||++|++|..+|..+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899955 89999999999999999999654
No 372
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=87.74 E-value=39 Score=37.11 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=29.7
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|+|||||+ |+++|..|+++|++|+|+|+++.++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 489999875 8899999999999999999987654
No 373
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=87.52 E-value=4 Score=47.68 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=26.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCc-EEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.||||||| .|+-+|..+.+.|.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999987 588899999999997 99998754
No 374
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.44 E-value=0.65 Score=47.99 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
..|.|+| |++|+..|+.|++.|.+|.++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3599999 5679999999999999999999853
No 375
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.44 E-value=0.63 Score=45.98 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=39.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC--------CccccCCHHHHHHHHHcCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR--------EQEWNISRKELLELVESGILV 167 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~--------~r~~~IS~~~l~~L~~lGl~~ 167 (549)
.++|+|+| .|...|-.|++.|+.|++||+.+..-. ......+......|.++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 58999965 799999999999999999998864210 011112233455777888653
No 376
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.01 E-value=0.65 Score=47.98 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=28.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 59999966 69999999999999999999875
No 377
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=86.99 E-value=0.53 Score=47.65 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.6
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|+| ||+|-++ |++||++|.||+|||-.+.
T Consensus 4 iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq 40 (273)
T PRK13232 4 IAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPK 40 (273)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccc
Confidence 44558 8887765 7788999999999997654
No 378
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.51 E-value=0.82 Score=48.08 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=28.7
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+||| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4599999 6899999999999999 899999854
No 379
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.49 E-value=0.83 Score=48.01 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+||| ||+|+.+|..|++.|+ ++.|+|+...
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4599999 6799999999999998 8899998753
No 380
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=86.40 E-value=1.4 Score=46.18 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=40.4
Q ss_pred HHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 211 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 211 L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+...+...|.+|+.+++|++|..+++++.|.+.+|++++||.||.|....
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred HHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence 33344445779999999999999999999999999999999999887644
No 381
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.35 E-value=1.1 Score=40.62 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=27.4
Q ss_pred EEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
|+|+| ||+|+.+|..|++.|+ ++.++|....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 78999 7899999999999998 6999997653
No 382
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.25 E-value=1.8 Score=47.72 Aligned_cols=36 Identities=39% Similarity=0.672 Sum_probs=33.0
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.|||||||||. |+++|+.||++|++|+|+||+..++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 69999999886 8889999999999999999998765
No 383
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.09 E-value=0.97 Score=43.82 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+|+| ||+|+.+|..|++.|. ++.|+|....
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 4599999 7899999999999998 8999997653
No 384
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.84 E-value=0.84 Score=46.64 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999966 69999999999999999999764
No 385
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=85.77 E-value=1.9 Score=45.71 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-CCcEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-dG~~i~ArlVI~ADG~~ 260 (549)
.+.+.|.+.+++.|++|+.+++|++|..+++++++.+. +|+++.||.||.|.-..
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 34455777777789999999999999998888766543 67789999999986543
No 386
>PLN02676 polyamine oxidase
Probab=85.75 E-value=2 Score=47.54 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=30.7
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCC-cEEEEccCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGL-RVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~Gl-rVlLIEr~~~~ 144 (549)
.+||||||||+ |+++|..|+++|+ +|+|+|++...
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 68999999875 9999999999998 59999998753
No 387
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.67 E-value=1.1 Score=42.42 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=27.0
Q ss_pred EEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
|+|+| ||+|+..|..|++.|+. +.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 78999 78999999999999995 99999765
No 388
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.33 E-value=1.2 Score=46.13 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=28.1
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|.|+|+ .+|++.|..|+++|++|.++.|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 46999995 579999999999999999999864
No 389
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=85.28 E-value=0.75 Score=46.54 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=24.5
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|.| ||+|-+ +|.+||++|+||+|||-.+-
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q 39 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 67889 887665 46678899999999997654
No 390
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.23 E-value=1.1 Score=40.31 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=28.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+|+| |++|+.+|..|++.|+ ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3489999 6789999999999999 6899997654
No 391
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=84.95 E-value=0.84 Score=46.22 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|+| ||+|=++ |++||+.|.||+|||-.+-
T Consensus 4 iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 4 VAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPK 40 (274)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 45668 8877654 7778999999999997654
No 392
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.77 E-value=1 Score=46.19 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=28.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-|.|+|+| +|.-.|..++++|++|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 48999965 799999999999999999998764
No 393
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.67 E-value=1 Score=46.08 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.2
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 8999966 69999999999999999999865
No 394
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.65 E-value=1.1 Score=45.45 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCC-CcEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
.-|+|+| ||+|+.+|-.||+.| -++.|+|....
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4699999 789999999999999 57999996543
No 395
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=84.43 E-value=9.5 Score=43.82 Aligned_cols=31 Identities=35% Similarity=0.359 Sum_probs=25.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+||||| .|.-+|..+.+.|. +|.|+++..
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 59999987 58888888888887 599998764
No 396
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=84.15 E-value=3.6 Score=44.94 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=33.3
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||+|+ |+++|+.|+++|.||+++||+...+
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 379999999885 9999999999999999999997654
No 397
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=84.10 E-value=0.88 Score=45.80 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=23.8
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.| ||+|=+ +|..||++|.||+|||-.+
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56778 777654 4677889999999999765
No 398
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.09 E-value=1.2 Score=45.43 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=26.3
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
|.|+|+| +|++.|..|++.|++|.+++|.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 8899955 7999999999999999999985
No 399
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.85 E-value=1.7 Score=39.26 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=27.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
--|+|+| ||+|.+++..|+..|.+ |.|+-|..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4699999 68999999999999998 99998753
No 400
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.80 E-value=1.2 Score=46.39 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=27.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|||+| +|...|..++.+|++|.++|+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999965 79999999999999999999875
No 401
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.62 E-value=1.3 Score=48.68 Aligned_cols=31 Identities=35% Similarity=0.418 Sum_probs=27.3
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+|+ +.|+.+|..|+++|++|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5999995 579999999999999999999764
No 402
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=83.58 E-value=0.97 Score=45.47 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=23.2
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|.| ||+|=++ |.+||++|.||+|||-.+
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 55667 7876653 667889999999999765
No 403
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.58 E-value=1.3 Score=45.33 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.7
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr 140 (549)
|.|+|+| +|++.|..|+++|++|.+++|
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 8899955 799999999999999999997
No 404
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=83.34 E-value=5.7 Score=43.08 Aligned_cols=33 Identities=42% Similarity=0.617 Sum_probs=28.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+|||+||||| +|+++|+.|+++|++|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999976 58889999999999999999864
No 405
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=83.23 E-value=0.99 Score=45.25 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=23.8
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|+| ||+|-+ +|..||++|.||+|||-.+.
T Consensus 4 iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 56668 787665 36678899999999997654
No 406
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.66 E-value=1.7 Score=42.51 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.-|+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5699999 78999999999999986 89999764
No 407
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=82.62 E-value=1.3 Score=42.90 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=23.8
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|.| ||.|-+ +|..||++|.||+|||-.+.
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q 39 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 56778 887665 46678899999999996543
No 408
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.38 E-value=1.5 Score=44.93 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999965 69999999999999999999864
No 409
>PRK13236 nitrogenase reductase; Reviewed
Probab=82.12 E-value=1.2 Score=45.92 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=24.3
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+.+.| ||+|-++ |+.||++|.||+|||-.+-.
T Consensus 9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 44566 7776654 77889999999999976643
No 410
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=82.07 E-value=1.2 Score=45.74 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.4
Q ss_pred EEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 114 IVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 114 IIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
.|.| ||+|-++ |++||+.|.||+|||-.+-
T Consensus 8 ai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 8 AFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred EEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3447 7887765 7788999999999996653
No 411
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.04 E-value=1.5 Score=44.80 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999965 79999999999999999999865
No 412
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=81.59 E-value=1.3 Score=45.54 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=24.7
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|.| ||+|=+ +|++||+.|.||+|||-.+-
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 67889 887544 57788999999999997654
No 413
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=81.55 E-value=1.2 Score=44.75 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=22.9
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+| ||+|-++ |..||++|.||+|||-.+
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 44557 7776654 677889999999999664
No 414
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.01 E-value=2.2 Score=36.84 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.0
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|||||. ..|-.+|-.|.+.+.+|.++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 689995 579999999999888999999875
No 415
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=80.95 E-value=2.1 Score=42.69 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=27.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
..|+|+| ||+|+.+|..|++.|+ ++.++|....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 5699999 7899999999999986 5677776543
No 416
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=80.86 E-value=2.1 Score=41.53 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=26.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
--|+||||| +|...|..|.+.|.+|.|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 369999976 7999999999999999999853
No 417
>PLN02487 zeta-carotene desaturase
Probab=80.83 E-value=1.1e+02 Score=34.76 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=42.7
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCC-C------cc----------ccCCHHHHHHHHHcCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGR-E------QE----------WNISRKELLELVESGILV 167 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~-~------r~----------~~IS~~~l~~L~~lGl~~ 167 (549)
..+|+|||||+ |+++|..|+++|++|+|+|+.+.++. . .. +...+..+..|.++|+.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~ 150 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADE 150 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcc
Confidence 46899999774 88999999999999999999876541 1 01 112245677888888754
No 418
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.55 E-value=2.1 Score=42.59 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+|+| ||+|+.+|-.|++.|+ +..|+|....
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4599999 7899999999999998 7888886543
No 419
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=80.47 E-value=16 Score=41.90 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+||||| .|.-+|..+.+.|. +|.++.+..
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 69999987 58888888888886 699888753
No 420
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=80.23 E-value=1.6 Score=45.65 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 120 LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 120 ~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|+++|..|+++|++|+|+|+...++
T Consensus 2 aGL~aA~~L~~~G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 2 AGLAAAYYLAKAGYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred hHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 58999999999999999999987653
No 421
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.14 E-value=2 Score=44.78 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=26.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
.|.|+|.| +|+..|..|+++|++|.+++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 48999955 7999999999999999999974
No 422
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=80.01 E-value=2.2 Score=45.14 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=28.5
Q ss_pred ccEEEEc-chHHHHHHHHHHh--CCCcEEEEccCCCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr--~GlrVlLIEr~~~~~ 145 (549)
.-|.||| ||+|.-+|..|-+ .++.|.++|+.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 3699999 5679989887655 489999999998764
No 423
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=79.65 E-value=2.3 Score=42.56 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=27.4
Q ss_pred cccEEEEc-chHHHHHHHHHHhCC-----------CcEEEEccCC
Q 008915 110 TFDVIVCG-GTLGIFIATALSFKG-----------LRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LAr~G-----------lrVlLIEr~~ 142 (549)
...|+||| ||+|+..+-.||+.| .++.|+|...
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 46799999 789999999999874 3888888654
No 424
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=79.52 E-value=2.6 Score=39.22 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVE 139 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIE 139 (549)
--|+||||| +|.--|..|.+.|.+|.||.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 359999976 69989999999999999995
No 425
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=79.50 E-value=2.5 Score=41.66 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=27.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+|+| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4699999 7899999999999998 677888654
No 426
>PLN02268 probable polyamine oxidase
Probab=79.44 E-value=4.6 Score=43.55 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=29.2
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCC
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+|||||||+ |+++|..|.++|++|+|+|+..-.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRI 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 699999885 999999999999999999987654
No 427
>PRK04148 hypothetical protein; Provisional
Probab=79.42 E-value=1.7 Score=39.38 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=27.3
Q ss_pred cEEEEcchHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|++||-|.|...|..|++.|++|+.+|.++
T Consensus 19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIGFYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred EEEEEEecCCHHHHHHHHHCCCEEEEEECCH
Confidence 4999996688888999999999999999665
No 428
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.26 E-value=2.2 Score=43.44 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|||+| +|...|..|+++|++|.++|+.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999965 79999999999999999999765
No 429
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=79.15 E-value=2.5 Score=43.28 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=27.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
-.|+|+| ||+|.++|..|++.|. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4699999 6899999999999998 799998863
No 430
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=79.04 E-value=2.6 Score=42.19 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=28.2
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
...|+|+| ||+|+.+|..|++.|+ +..|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35699999 7899999999999997 688888654
No 431
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=78.68 E-value=5.9 Score=42.99 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=40.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-Cc----------c----c--cCCHHHHHHHHHcCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQ----------E----W--NISRKELLELVESGIL 166 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r----------~----~--~IS~~~l~~L~~lGl~ 166 (549)
+|+||||| +|+++|..|+++|++|+|+|+.+.++- .. + | .-.++.++.++++|+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 73 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIE 73 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCc
Confidence 48999977 599999999999999999998865431 10 0 1 1125567788888874
No 432
>PRK06153 hypothetical protein; Provisional
Probab=78.66 E-value=2.1 Score=45.52 Aligned_cols=33 Identities=12% Similarity=0.356 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
--|+||| ||+|+.+|-.|||.|+ ++.|+|...+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 4699999 8899999999999987 6888987654
No 433
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=78.64 E-value=7.2 Score=42.87 Aligned_cols=35 Identities=31% Similarity=0.570 Sum_probs=30.8
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
-||||||||+ |+++|+.||++|++|+|+||+..++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4899999875 8888889999999999999997653
No 434
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=78.63 E-value=2.2 Score=50.67 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=31.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.-|.||| ||+|+++|..|-+.|+.|+|.||..-++
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 6799999 6789999999999999999999987654
No 435
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=78.50 E-value=2.1 Score=44.78 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=31.8
Q ss_pred CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+..+..++.|..+..-+||+.|+..+|++-+-|-||-|.=..
T Consensus 231 ~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d 272 (447)
T COG2907 231 RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD 272 (447)
T ss_pred cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence 346888888999998899988887778776667677665443
No 436
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=78.41 E-value=2.8 Score=43.04 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=36.7
Q ss_pred EEEEc-chHHHHHHHHHHhCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGIL 166 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~ 166 (549)
||||| ||+|+-.+-.|.|.|+ |..++|-.+..-+ .+.+.++..|.+.|.-
T Consensus 77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSls----SLNrHs~Atl~DVG~P 128 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLS----SLNRHSCATLADVGTP 128 (430)
T ss_pred EEEEecCchhHHHHHHHHHhcCceEEEechhhccHh----hhhhhhhhhHhhcCCc
Confidence 88888 7899999999999997 5677775443111 2556778888888853
No 437
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.32 E-value=2.4 Score=43.98 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=27.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|.+.|..|+++|++|.+++|..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 38899965 69999999999999999999853
No 438
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=78.32 E-value=22 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=25.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
-.|+|+||| .|+-+|..+.+.|. +|.||+|..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 369999976 58888888888896 699998754
No 439
>PRK08328 hypothetical protein; Provisional
Probab=78.23 E-value=3.1 Score=41.27 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=27.1
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4599999 7899999999999997 477887654
No 440
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.18 E-value=2.6 Score=45.78 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.8
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|+|+|+ +.|..+|..|+++|++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35899995 579999999999999999999864
No 441
>PLN02568 polyamine oxidase
Probab=78.08 E-value=6.5 Score=44.05 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.7
Q ss_pred cccEEEEcchH-HHHHHHHHHhCC-----CcEEEEccCCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKG-----LRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~G-----lrVlLIEr~~~~~ 145 (549)
.+||||||||+ |+++|..|++.| ++|+|+|++..++
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 47999999875 888999999887 9999999987543
No 442
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=77.74 E-value=8.9 Score=43.21 Aligned_cols=59 Identities=10% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE---E-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+.|+++++++.++++..+++.++ + ...+|+ .+.|+-||-|+|..+.+
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 35778888888888999999999999987654332 2 122454 68999999999998753
No 443
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.60 E-value=2.7 Score=43.35 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=27.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|||+| +|...|..|++.|++|.++|+..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999965 79999999999999999999764
No 444
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=77.41 E-value=2.8 Score=41.62 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=26.9
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3788884 689999999999999999998764
No 445
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=77.37 E-value=2.2 Score=47.48 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=66.4
Q ss_pred CCcccCCCcccccc--------c--cccceeeeccCCCCChhHHHHHhhhccCcccccCchh----hHHHHHHHHHHHHH
Q 008915 10 NGVSHFPSQVHGKR--------K--VSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGA----YSYDALKRLDQIWS 75 (549)
Q Consensus 10 ~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 75 (549)
|-+++|++++-.+| + -.|..+|...|- -|..+-|.|..|.-..--.|-+ .+-+..+++|+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ilt~~qmr~lD~~ai 104 (544)
T PLN02918 28 HSSSLSSSPSPTQRFLTPSQGSRLPPRRRALCTKSQD---PRWRRAMASLAVIPNMQDSGSPPLSYLTQREAAEIDETLM 104 (544)
T ss_pred CcccCCCCCCccccccCccccccCCCCchhhcccccC---chHHhhhhhhcccccccccCCCceEEeCHHHHHHHHHHHH
Confidence 34777776665555 1 123355555554 3677889998886655544444 26788999999884
Q ss_pred hhccccCcc-------cccceEEecCCCCCCCCCCCCCCCCcccEEEEc-c--hH-HHHHHHHHHhCCCcEEEEc
Q 008915 76 NICSTQTVQ-------QEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG-G--TL-GIFIATALSFKGLRVAIVE 139 (549)
Q Consensus 76 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~yDVIIVG-G--g~-G~~~Aa~LAr~GlrVlLIE 139 (549)
.-. +.... ..+-+.|.+.-.. . ...-=+|+|| | |. |..+|..|+..|++|.|+-
T Consensus 105 ~~~-Gis~~~LME~AG~avA~~I~~~~~~---~------~~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~ 169 (544)
T PLN02918 105 GPL-GFSVDQLMELAGLSVAASIAEVYKP---G------EYSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCY 169 (544)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHHHHhccc---c------cCCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEE
Confidence 321 11100 0111222211000 0 0011156678 5 44 9999999999999999885
No 446
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=77.22 E-value=4 Score=42.30 Aligned_cols=60 Identities=30% Similarity=0.402 Sum_probs=38.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccch
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDID 172 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie 172 (549)
-|.|+|+| +|.-.|..+|..|++|.+.|.++..- .+..+.....++.+.+-|-+++.+.+
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~-~~~~~~i~~~l~k~~~~g~l~~~~~~ 65 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEAL-ERALAYIEKNLEKLVEKGKLTEEEAD 65 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHH-HHHHHHHHHHHHHHHhcCCCChhhHH
Confidence 48899966 69999998888889999999884321 11112223345566666666544333
No 447
>PRK08177 short chain dehydrogenase; Provisional
Probab=77.11 E-value=3.2 Score=40.19 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| ++|..+|..|+++|++|++++|.+
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 788884 689999999999999999999875
No 448
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.82 E-value=3.3 Score=42.51 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=26.5
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
-|+|+| ||+|.++|..|++.|.+ |.++.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 588999 57888888899999997 99998853
No 449
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=76.61 E-value=27 Score=38.42 Aligned_cols=29 Identities=17% Similarity=-0.067 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEEC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE 235 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~ 235 (549)
+..=|.+.+++.|+++..+|+|++++.+.
T Consensus 209 ii~Pl~~~L~~~GV~F~~~t~V~di~~~~ 237 (500)
T PF06100_consen 209 IILPLIRYLKSQGVDFRFNTKVTDIDFDI 237 (500)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEEc
Confidence 34446677888999999999999998753
No 450
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=76.47 E-value=2.9 Score=43.14 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=27.4
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+ .+|...|..|++.|+.|.+++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4899995 479999999999999999999854
No 451
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=76.47 E-value=2.8 Score=42.63 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=26.8
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|||. -+|.+.|..|+++|++|.++|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3889995 479999999999999999999753
No 452
>PRK06483 dihydromonapterin reductase; Provisional
Probab=76.23 E-value=3.6 Score=40.07 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++++|.+
T Consensus 5 vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 5 ILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred EEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 788884 689999999999999999999864
No 453
>PLN02780 ketoreductase/ oxidoreductase
Probab=76.17 E-value=2.9 Score=43.41 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++++|+.
T Consensus 56 ~lITGAs~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 56 ALVTGPTDGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence 788884 789999999999999999999864
No 454
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.15 E-value=3.7 Score=39.70 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.0
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCcEEEEccC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
-|+|+| |.+|..+|..|.+.|.+|++.|+.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 499999 668999999999999999999865
No 455
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.12 E-value=3.1 Score=40.97 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|+|.|| ++|..+|..|+++|++|++++|..
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3899995 589999999999999999999754
No 456
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=76.12 E-value=3.1 Score=43.08 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERN 141 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~ 141 (549)
-|.|+|+| +|+.+|+.||.+|+ +|.++|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 38899966 79999999999887 89999984
No 457
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.08 E-value=3.3 Score=42.69 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=27.7
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-++|.|| |+|..+|..|++.|.+|+++.|...
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~ 43 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTR 43 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 3788885 7899999999999999999998753
No 458
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.97 E-value=2.4 Score=42.36 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.6
Q ss_pred EEEEc--chHHHH-----HHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG--GTLGIF-----IATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG--Gg~G~~-----~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|+| ||+|.+ +|..|++.|.+|++||-.+
T Consensus 4 iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 4 IAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 67888 777664 3335678999999999654
No 459
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=75.96 E-value=3.3 Score=40.92 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| ++|..+|..|+++|++|.+++|..
T Consensus 9 vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 9 ALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred EEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 888884 689999999999999999998764
No 460
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.82 E-value=3.4 Score=41.27 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++++|..
T Consensus 11 ~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 11 AFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 688884 689999999999999999998864
No 461
>PRK06101 short chain dehydrogenase; Provisional
Probab=75.75 E-value=3.5 Score=40.39 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
++|.|| |+|..+|..|+++|++|.+++|.
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEEECC
Confidence 788884 68999999999999999999885
No 462
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=75.68 E-value=3.8 Score=39.82 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
-|+||||| +|..-+..|.+.|.+|.|+++.
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 59999976 6888888999999999999864
No 463
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=75.61 E-value=4.1 Score=43.44 Aligned_cols=83 Identities=19% Similarity=0.354 Sum_probs=49.0
Q ss_pred ChhHHHHHhhhccCcccccCchhhHHHHHHHHHHHHHhhccccCcccccceEEecCCCCCCCCCCCCCCCCcccEEEEcc
Q 008915 39 PSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGG 118 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDVIIVGG 118 (549)
|.|-+.|++++....+-.|-=.+. +.++|+.|-+....-|.-... .+. .| ..--|.|+||
T Consensus 47 ~~Re~~vl~~~~~~~~~~~l~~~~-------~~~i~~~i~~~s~~~q~~~~~--------~~~---~~--~~~~I~IiGG 106 (374)
T PRK11199 47 PEREAAMLASRRAEAEALGVPPDL-------IEDVLRRVMRESYSSENDKGF--------KTL---NP--DLRPVVIVGG 106 (374)
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHHHHhHHhcc--------ccc---Cc--ccceEEEEcC
Confidence 999999999997754433222221 233455443111100110111 000 00 1235999984
Q ss_pred -h-HHHHHHHHHHhCCCcEEEEccC
Q 008915 119 -T-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 119 -g-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
| +|.+.|..|.++|+.|.++++.
T Consensus 107 ~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 107 KGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CChhhHHHHHHHHHCCCeEEEeCCC
Confidence 6 6999999999999999999985
No 464
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=75.53 E-value=3 Score=45.11 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|-| +|+.+|..|+++|++|.++|+.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 48999955 79999999999999999999764
No 465
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=75.52 E-value=3.6 Score=39.75 Aligned_cols=32 Identities=34% Similarity=0.619 Sum_probs=27.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.-|+|+| ||+|+..|-.|++.|.+ +.++|...
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4599999 78999999999999986 88998654
No 466
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.46 E-value=3.4 Score=44.04 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.1
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+|+| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5699999 7899999999999998 688998764
No 467
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=75.42 E-value=3.1 Score=39.37 Aligned_cols=32 Identities=38% Similarity=0.448 Sum_probs=25.4
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|+|||||. |.-+|..|++.|.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3599999885 8888999999999999998875
No 468
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.41 E-value=3.2 Score=43.21 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|+| +|...|..|+++|++|.+++|.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 59999955 79999999999999999999854
No 469
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=75.33 E-value=3.4 Score=40.95 Aligned_cols=30 Identities=40% Similarity=0.540 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|++|.+++|..
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~~ 34 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRNE 34 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 788884 689999999999999999998764
No 470
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=75.30 E-value=3.6 Score=44.68 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.6
Q ss_pred EEeCceEEEEEEEC-CEEEEEEcCCcEEEcCEEEE
Q 008915 222 IFEGYSVSSICTYE-NAAVLLLAEGKILSSHLIID 255 (549)
Q Consensus 222 v~~~t~v~~i~~~~-dgv~V~~~dG~~i~ArlVI~ 255 (549)
+..+++|..|...+ +.++|++.||+.+.||.||.
T Consensus 246 ~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIv 280 (498)
T KOG0685|consen 246 IHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIV 280 (498)
T ss_pred hcccccceeeccCCCCcEEEEEeCCcEEeccEEEE
Confidence 33458899998664 56889999999999999994
No 471
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=75.10 E-value=3.8 Score=40.70 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=27.3
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|.|| |+|..+|..|+++|.+|+++++...
T Consensus 12 vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 12 IIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 788884 6899999999999999999998754
No 472
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=75.02 E-value=3.3 Score=42.33 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-|.|||+| +|...|..|+++|++|.++|+.+.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 38999966 799999999999999999998753
No 473
>PRK07063 short chain dehydrogenase; Provisional
Probab=74.97 E-value=3.6 Score=40.68 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3888894 689999999999999999999853
No 474
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.83 E-value=3.8 Score=40.15 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=26.9
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-++|.|| |+|..+|..|+++|.+|+++.|..
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQ 39 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4888995 689999999999999999998753
No 475
>PRK06057 short chain dehydrogenase; Provisional
Probab=74.81 E-value=3.7 Score=40.56 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=27.1
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|+|+|| ++|..+|..|+++|++|.+++|..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3899995 689999999999999999998754
No 476
>PRK05866 short chain dehydrogenase; Provisional
Probab=74.51 E-value=3.8 Score=41.78 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|++|.++.|..
T Consensus 43 vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 43 ILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 888884 689999999999999999998863
No 477
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=74.48 E-value=3.8 Score=43.68 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=28.5
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+|+| ||+|+.+|..|++.|+ ++.++|....
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 4599999 7899999999999997 8889987643
No 478
>PRK05854 short chain dehydrogenase; Provisional
Probab=74.43 E-value=3.9 Score=42.20 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=26.9
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-++|.|| |+|..+|..|+++|.+|.++.|..
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3788884 789999999999999999998754
No 479
>PRK06924 short chain dehydrogenase; Provisional
Probab=74.23 E-value=4.1 Score=39.95 Aligned_cols=30 Identities=40% Similarity=0.479 Sum_probs=26.2
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| ++|..+|..|+++|++|+++.|..
T Consensus 4 vlItGasggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 4 VIITGTSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred EEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 788884 689999999999999999998753
No 480
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=73.99 E-value=3.9 Score=40.23 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| ++|..+|..|+++|++|.+++|.+
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 688884 689999999999999999998853
No 481
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.96 E-value=4.1 Score=40.31 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=25.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
++|.|| |+|..+|..|+++|.+|+++.|.
T Consensus 11 ~lItGas~gIG~aia~~l~~~G~~vv~~~~~ 41 (251)
T PRK12481 11 AIITGCNTGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence 788885 68999999999999999999764
No 482
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=73.93 E-value=3.8 Score=44.02 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=27.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+||| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 5699999 7899999999999998 578888654
No 483
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=73.91 E-value=3.4 Score=45.83 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-|.|||+| +|.-.|..++++|++|.|+|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 49999955 799999999999999999998764
No 484
>PRK07024 short chain dehydrogenase; Provisional
Probab=73.84 E-value=4.2 Score=40.22 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=27.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|.|| |+|..+|..|+++|.+|.+++|+.
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~ 36 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVARRT 36 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4888884 689999999999999999999863
No 485
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.70 E-value=4.1 Score=40.54 Aligned_cols=31 Identities=45% Similarity=0.610 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-++|.|| |+|..+|..|+++|.+|++++|..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788884 689999999999999999999864
No 486
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.56 E-value=4 Score=44.23 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=27.1
Q ss_pred EEEEc-chHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|+| |+.|.++|..|+++|.+|.+.|+...
T Consensus 8 v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 78999 56899999999999999999997653
No 487
>PRK07023 short chain dehydrogenase; Provisional
Probab=73.45 E-value=4.2 Score=39.73 Aligned_cols=30 Identities=37% Similarity=0.418 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| ++|..+|..|+++|.+|+++.|..
T Consensus 4 vlItGasggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 4 AIVTGHSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred EEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 788994 689999999999999999998754
No 488
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=73.44 E-value=3.6 Score=43.81 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=27.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|.| +|+++|+.||+.|+.|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 37899976 89999999999999999999764
No 489
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=73.40 E-value=4.3 Score=38.00 Aligned_cols=32 Identities=41% Similarity=0.537 Sum_probs=25.9
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.++|+| |-.|..+|..|...|.+|.|.|..|.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 489999 88999999999999999999998763
No 490
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=73.37 E-value=3 Score=42.08 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=22.2
Q ss_pred EEEEc-chHHHH-----HHHHHHh-CCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSF-KGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr-~GlrVlLIEr~~~ 143 (549)
|.|+| ||+|-+ +|++||+ +|.||+|||-.+.
T Consensus 5 Iav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq 42 (275)
T PRK13233 5 IAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPK 42 (275)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcC
Confidence 34557 787665 3557887 6999999996553
No 491
>PRK07326 short chain dehydrogenase; Provisional
Probab=73.37 E-value=4.1 Score=39.54 Aligned_cols=31 Identities=39% Similarity=0.627 Sum_probs=26.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
=|+|.|| ++|..+|..|+++|++|.++.|.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 3888884 589999999999999999998754
No 492
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=73.30 E-value=4.4 Score=41.86 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.8
Q ss_pred EEEEc-chHHHHHHHHHHhCCC--cEEEEccCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGL--RVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~Gl--rVlLIEr~~~ 143 (549)
|+|+| |++|.++|..|+..|+ .+.|+|+...
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 78999 6689999999999994 7999998653
No 493
>PRK06720 hypothetical protein; Provisional
Probab=73.23 E-value=4.8 Score=37.79 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=26.7
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-++|.|| |+|..+|..|+++|.+|.++++..
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 5788884 689999999999999999999753
No 494
>PRK07102 short chain dehydrogenase; Provisional
Probab=73.14 E-value=4.2 Score=39.78 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| ++|..+|..|+++|++|++++|..
T Consensus 4 vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 4 ILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 788884 689999999999999999999864
No 495
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.99 E-value=4.2 Score=39.69 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|+|.|| ++|..+|..|+++|++|.++.|.+
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4899994 589999999999999999999875
No 496
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=72.98 E-value=5.2 Score=38.62 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=27.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.-|+|+| ||+|+..|..|++.|++ +.++|...
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4599999 78999999999999985 77888654
No 497
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=72.97 E-value=4.2 Score=40.31 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=27.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-++|.|| |+|..+|..|+++|++|.+++|..
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3788885 689999999999999999999864
No 498
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.95 E-value=4.2 Score=44.24 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.7
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|+|+| |+.|.++|..|+++|++|.+.|...
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 489999 7889998889999999999999765
No 499
>PRK06398 aldose dehydrogenase; Validated
Probab=72.91 E-value=4.7 Score=40.07 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=28.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-++|.|| |+|..+|..|+++|.+|+++.|...
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 8 VAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 4889995 6899999999999999999998753
No 500
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=72.86 E-value=4.4 Score=39.99 Aligned_cols=30 Identities=43% Similarity=0.775 Sum_probs=26.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| ++|..+|..|+++|++|.+++|..
T Consensus 5 ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~ 36 (259)
T PRK12384 5 AVVIGGGQTLGAFLCHGLAEEGYRVAVADINS 36 (259)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 788895 579999999999999999998764
Done!