BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008916
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 17/224 (7%)
Query: 154 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEA----ALMELLNFMYSNTLSTTAAPA 209
+LAA + +F L S ES V +R +SE + ++ +MY+ + + +
Sbjct: 71 VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTG-S 129
Query: 210 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 269
+ +VL AD+F + +C L+ ++ L + + D R+
Sbjct: 130 VHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHMYTLSQLALKAADMIRRN 188
Query: 270 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 329
+D +E LP + LS ++ + SE+ +++ VLKW + R E RE
Sbjct: 189 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ----RNAEERE 239
Query: 330 VLGSRLARFIRFPHMTCRKLKKVLTCNDF--DHDVASKLVLEAL 371
L + +R M L + + +++V KLV +A+
Sbjct: 240 RYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAV 283
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 124 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRIN 183
DE E+S DC V + ILAA+SP F +F + M+ES++ V IN
Sbjct: 162 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV--EIN 219
Query: 184 ASEEAALMELLNFMYSNTLSTTAAPAL----LDVLMAADKFEVASCMRYC-SRLLRNMPM 238
E E++ F+Y T AP L D+L AADK+ + C L N+ +
Sbjct: 220 DVEPEVFKEMMCFIY-----TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSV 274
Query: 239 TPESALLYL 247
+ +L L
Sbjct: 275 ENAAEILIL 283
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 124 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRIN 183
DE E+S DC V + ILAA+SP F +F + M+ES++ V IN
Sbjct: 13 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV--EIN 70
Query: 184 ASEEAALMELLNFMYSNTLSTTAAPAL----LDVLMAADKFEVASCMRYC-SRLLRNMPM 238
E E++ F+Y T AP L D+L AADK+ + C L N+ +
Sbjct: 71 DVEPEVFKEMMCFIY-----TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSV 125
Query: 239 TPESALLYL 247
+ +L L
Sbjct: 126 ENAAEILIL 134
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 23/227 (10%)
Query: 154 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEA----ALMELLNFMYSNTLSTTAAPA 209
+LAA + +F L S ES V R +SE + ++ + Y+ + + +
Sbjct: 53 VLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTG-S 111
Query: 210 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 269
+ +VL AD+F + +C L+ ++ L + + D R+
Sbjct: 112 VHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHXYTLSQLALKAADXIRRN 170
Query: 270 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 329
+D +E LP + LS ++ + SE+ +++ VLKW + R E RE
Sbjct: 171 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ----RNAEERE 221
Query: 330 VLGSRLARFIRF----PHMTCRKLK-KVLTCNDFDHDVASKLVLEAL 371
L + +R P R +K + L N+ +V KLV +A+
Sbjct: 222 RYFEELFKLLRLSQXKPTYLTRHVKPERLVANN---EVCVKLVADAV 265
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 154 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 213
+LAA S +F KLF++G +Q + ++E AL L++F Y+ TL+ + A + D+
Sbjct: 53 VLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDFAYTATLTVSTA-NVGDI 109
Query: 214 LMAADKFEVASCMRYCSRLL 233
L AA E+ + C+ LL
Sbjct: 110 LSAARLLEIPAVSHVCADLL 129
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 154 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 213
+LAA S +F KLF++G +Q + ++E AL L++F Y+ TL+ + A + D+
Sbjct: 43 VLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDFAYTATLTVSTAN-VGDI 99
Query: 214 LMAADKFEVASCMRYCSRLL 233
L AA E+ + C+ LL
Sbjct: 100 LSAARLLEIPAVSHVCADLL 119
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 124 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRIN 183
DE E+S DC V + ILAA+SP F F + +ES++ V IN
Sbjct: 22 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV--EIN 79
Query: 184 ASEEAALMELLNFMYS 199
E E F+Y+
Sbjct: 80 DVEPEVFKEXXCFIYT 95
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 286 ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 345
+P+ G+ + + + I SE+ +Y+ VL++AR R + E + + +F + P +T
Sbjct: 105 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMLT 162
Query: 346 CRKLKKVL 353
+ L++++
Sbjct: 163 LKALQELI 170
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 138 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 197
D + +V + IL+A S +F++LFS + E + I A E+LN++
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFA-------EILNYI 87
Query: 198 YSNTLSTTAAPALLDVLMAADKF 220
YS+ + + LLD L+ + +
Sbjct: 88 YSSKIVRVRSD-LLDELIKSGQL 109
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 138 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 197
D + +V + IL+A S +F++LFS + E + I A E+LN++
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFA-------EILNYI 85
Query: 198 YSNTLSTTAAPALLDVLMAADKF 220
YS+ + + LLD L+ + +
Sbjct: 86 YSSKIVRVRSD-LLDELIKSGQL 107
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 286 ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 345
+P+ G+ + + + I SE+ +Y+ VL++AR R + E + + +F + P T
Sbjct: 106 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKT 163
Query: 346 CRKLKKVL 353
+ L++++
Sbjct: 164 LKALQELI 171
>pdb|2E84|A Chain A, Crystal Structure Of High-Molecular Weight Cytochrome C
From Desulfovibrio Vulgaris (Miyazaki F) In The Presence
Of Zinc Ion
Length = 556
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 93 EQILNQPD-MDDCVGCENQDEEVEA-------MIEGSPSGDEAANG--NESSWSMDCSTV 142
E+ ++QPD M CVGC NQ + A M G+ EAA G + MD TV
Sbjct: 345 EKAMHQPDSMKSCVGCHNQKVQAPACAGCHGFMKTGAKPQPEAACGVCHADPVGMDAKTV 404
Query: 143 V 143
Sbjct: 405 A 405
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 138 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINAS-EEAALMELLNF 196
D S VV+ +LAA S +F LF+N R + + A+ + + ++L+F
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSF 88
Query: 197 MYSNTLSTTAAPALLDVLMAADKF 220
Y+ LS D+LM F
Sbjct: 89 CYTGRLSMNVGDQ--DLLMYTAGF 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,341,194
Number of Sequences: 62578
Number of extensions: 530511
Number of successful extensions: 1013
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 14
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)