Query 008916
Match_columns 549
No_of_seqs 407 out of 2768
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 18:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.9E-64 4.2E-69 551.9 36.1 380 135-540 33-486 (571)
2 PHA02713 hypothetical protein; 100.0 4.3E-58 9.4E-63 503.5 31.1 368 126-539 15-473 (557)
3 PHA02790 Kelch-like protein; P 100.0 8.9E-56 1.9E-60 478.5 33.0 364 134-539 18-456 (480)
4 PHA03098 kelch-like protein; P 100.0 5.2E-53 1.1E-57 464.6 34.5 377 137-539 8-497 (534)
5 KOG4350 Uncharacterized conser 100.0 2.3E-31 5E-36 263.5 12.5 232 124-374 32-265 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 8E-24 1.7E-28 215.4 14.2 223 126-359 104-340 (521)
7 KOG4682 Uncharacterized conser 99.8 7.1E-19 1.5E-23 175.4 11.8 183 127-319 60-247 (488)
8 KOG4441 Proteins containing BT 99.8 1.8E-17 4E-22 182.1 18.9 133 398-540 333-533 (571)
9 PF07707 BACK: BTB And C-termi 99.7 3.8E-18 8.3E-23 145.7 5.3 102 243-353 1-102 (103)
10 PF00651 BTB: BTB/POZ domain; 99.7 1.1E-16 2.4E-21 138.4 8.0 105 128-235 2-109 (111)
11 KOG4591 Uncharacterized conser 99.6 3.6E-16 7.8E-21 142.5 7.8 163 128-302 58-224 (280)
12 smart00875 BACK BTB And C-term 99.6 1.1E-15 2.3E-20 129.7 9.6 99 243-351 1-99 (101)
13 PHA02713 hypothetical protein; 99.6 2.3E-15 5.1E-20 165.9 11.6 134 398-540 304-523 (557)
14 smart00225 BTB Broad-Complex, 99.6 8.7E-15 1.9E-19 120.3 8.0 88 140-230 3-90 (90)
15 PHA03098 kelch-like protein; P 99.5 1.1E-12 2.3E-17 144.8 21.2 263 237-539 72-447 (534)
16 KOG0783 Uncharacterized conser 99.5 2E-14 4.4E-19 154.1 6.0 147 134-288 708-860 (1267)
17 PHA02790 Kelch-like protein; P 99.3 3E-12 6.5E-17 139.1 10.4 113 398-522 319-469 (480)
18 TIGR03548 mutarot_permut cycli 99.2 8.3E-11 1.8E-15 121.5 11.7 133 398-539 73-313 (323)
19 TIGR03547 muta_rot_YjhT mutatr 99.1 3.6E-10 7.8E-15 117.9 11.4 125 407-540 85-332 (346)
20 TIGR03548 mutarot_permut cycli 99.1 4.7E-10 1E-14 115.9 11.7 113 418-539 52-233 (323)
21 TIGR03547 muta_rot_YjhT mutatr 99.1 5.5E-10 1.2E-14 116.5 11.5 133 398-539 18-267 (346)
22 PLN02153 epithiospecifier prot 99.0 1.2E-09 2.7E-14 113.6 12.3 132 398-539 33-261 (341)
23 PLN02153 epithiospecifier prot 99.0 1.7E-09 3.7E-14 112.6 12.1 136 398-542 86-327 (341)
24 PLN02193 nitrile-specifier pro 99.0 3.1E-09 6.7E-14 115.3 12.7 123 407-539 193-387 (470)
25 KOG4693 Uncharacterized conser 98.9 2.2E-09 4.8E-14 102.9 7.9 136 396-540 87-313 (392)
26 PRK14131 N-acetylneuraminic ac 98.9 5.4E-09 1.2E-13 110.4 10.7 127 407-539 106-353 (376)
27 PRK14131 N-acetylneuraminic ac 98.8 1.5E-08 3.3E-13 106.9 10.8 133 398-539 39-289 (376)
28 PLN02193 nitrile-specifier pro 98.8 4.5E-08 9.7E-13 106.3 12.1 120 398-526 229-417 (470)
29 KOG0511 Ankyrin repeat protein 98.2 1.5E-06 3.2E-11 87.3 6.1 137 146-289 301-444 (516)
30 KOG4693 Uncharacterized conser 98.0 1.7E-05 3.7E-10 76.7 8.2 124 408-540 45-261 (392)
31 KOG2838 Uncharacterized conser 97.9 1E-05 2.3E-10 78.0 3.9 82 125-206 119-200 (401)
32 KOG0783 Uncharacterized conser 97.8 2.9E-05 6.3E-10 85.0 7.0 95 137-231 557-683 (1267)
33 PF13964 Kelch_6: Kelch motif 97.7 5.3E-05 1.1E-09 55.4 3.9 46 425-504 1-49 (50)
34 KOG2838 Uncharacterized conser 97.6 3.4E-05 7.4E-10 74.6 2.2 96 147-244 262-394 (401)
35 PF01344 Kelch_1: Kelch motif; 97.6 5.2E-05 1.1E-09 54.5 2.7 44 425-502 1-47 (47)
36 KOG2716 Polymerase delta-inter 97.4 0.00046 1E-08 66.7 8.0 92 141-235 9-103 (230)
37 KOG1987 Speckle-type POZ prote 97.4 6.6E-05 1.4E-09 76.6 2.1 127 145-279 109-240 (297)
38 KOG1230 Protein containing rep 97.3 0.00079 1.7E-08 69.1 8.6 125 407-541 98-319 (521)
39 KOG0379 Kelch repeat-containin 97.1 0.0026 5.7E-08 69.3 11.0 120 409-538 90-284 (482)
40 KOG0379 Kelch repeat-containin 97.1 0.0016 3.6E-08 70.9 9.3 109 422-539 57-234 (482)
41 PF11822 DUF3342: Domain of un 97.1 0.00052 1.1E-08 69.0 4.6 88 146-235 14-102 (317)
42 PF02214 BTB_2: BTB/POZ domain 97.0 0.00057 1.2E-08 57.1 3.0 84 143-229 5-94 (94)
43 KOG3473 RNA polymerase II tran 96.5 0.0046 1E-07 50.6 5.1 73 146-222 27-112 (112)
44 PF07646 Kelch_2: Kelch motif; 96.4 0.0035 7.6E-08 45.5 3.6 46 425-502 1-49 (49)
45 KOG4152 Host cell transcriptio 96.3 0.019 4E-07 60.6 9.4 65 406-474 56-149 (830)
46 smart00512 Skp1 Found in Skp1 95.4 0.038 8.2E-07 47.1 5.9 73 146-222 12-104 (104)
47 PF13418 Kelch_4: Galactose ox 94.9 0.019 4.1E-07 41.5 2.3 45 425-503 1-49 (49)
48 KOG1665 AFH1-interacting prote 94.1 0.16 3.4E-06 48.5 6.9 91 138-231 10-105 (302)
49 COG3055 Uncharacterized protei 94.1 0.16 3.5E-06 51.8 7.5 38 407-448 113-155 (381)
50 KOG1724 SCF ubiquitin ligase, 93.5 0.22 4.9E-06 45.8 6.8 97 146-246 15-138 (162)
51 smart00612 Kelch Kelch domain. 93.4 0.068 1.5E-06 37.5 2.6 31 406-436 14-47 (47)
52 KOG2714 SETA binding protein S 93.0 0.32 7E-06 50.7 7.6 91 139-233 13-111 (465)
53 KOG1230 Protein containing rep 92.5 0.29 6.2E-06 50.9 6.4 64 407-474 154-245 (521)
54 PF13854 Kelch_5: Kelch motif 90.6 0.2 4.3E-06 35.0 2.2 24 422-449 1-24 (42)
55 PF03931 Skp1_POZ: Skp1 family 90.5 1.3 2.7E-05 33.8 6.8 49 146-199 11-59 (62)
56 KOG4152 Host cell transcriptio 90.3 0.39 8.5E-06 51.1 4.9 73 399-475 217-336 (830)
57 KOG3840 Uncharaterized conserv 88.3 16 0.00034 36.9 13.9 100 124-224 81-186 (438)
58 smart00612 Kelch Kelch domain. 87.1 1 2.2E-05 31.3 3.9 16 489-504 18-36 (47)
59 COG3055 Uncharacterized protei 86.4 0.9 1.9E-05 46.6 4.4 47 494-540 71-157 (381)
60 COG5201 SKP1 SCF ubiquitin lig 86.3 1.8 3.9E-05 37.8 5.5 85 146-235 12-120 (158)
61 KOG1778 CREB binding protein/P 86.2 0.52 1.1E-05 48.2 2.7 132 146-285 36-168 (319)
62 PF01344 Kelch_1: Kelch motif; 86.2 0.4 8.6E-06 33.9 1.3 24 503-526 12-43 (47)
63 KOG0511 Ankyrin repeat protein 85.8 0.44 9.6E-06 48.9 1.9 101 121-226 131-235 (516)
64 PF01466 Skp1: Skp1 family, di 85.1 0.72 1.6E-05 37.0 2.5 42 208-249 14-57 (78)
65 PF13964 Kelch_6: Kelch motif 83.0 0.98 2.1E-05 32.5 2.2 24 503-526 12-43 (50)
66 PF11822 DUF3342: Domain of un 77.7 1.2 2.5E-05 45.4 1.5 55 237-295 71-125 (317)
67 PLN02772 guanylate kinase 77.2 2.8 6.1E-05 44.2 4.2 48 397-448 34-95 (398)
68 PF13415 Kelch_3: Galactose ox 76.8 2.6 5.7E-05 30.2 2.8 32 435-470 1-49 (49)
69 PF13415 Kelch_3: Galactose ox 75.4 2.8 6E-05 30.0 2.6 27 407-433 19-48 (49)
70 KOG2437 Muskelin [Signal trans 74.7 2.8 6E-05 44.9 3.3 107 423-538 258-456 (723)
71 KOG4350 Uncharacterized conser 72.5 4.5 9.7E-05 42.1 4.1 112 208-351 148-260 (620)
72 PF07707 BACK: BTB And C-termi 69.4 15 0.00033 30.2 6.2 82 211-296 2-102 (103)
73 KOG2715 Uncharacterized conser 61.2 28 0.0006 32.1 6.3 93 140-235 22-120 (210)
74 PF07250 Glyoxal_oxid_N: Glyox 48.4 35 0.00077 33.7 5.4 72 408-483 47-142 (243)
75 KOG2075 Topoisomerase TOP1-int 45.2 56 0.0012 35.2 6.5 45 237-289 184-228 (521)
76 PF03089 RAG2: Recombination a 44.1 66 0.0014 32.4 6.4 49 489-538 117-173 (337)
77 PLN02772 guanylate kinase 44.0 79 0.0017 33.6 7.5 20 425-448 24-43 (398)
78 PF07250 Glyoxal_oxid_N: Glyox 39.8 45 0.00097 33.0 4.7 35 505-539 80-138 (243)
79 KOG2723 Uncharacterized conser 37.1 70 0.0015 31.1 5.4 85 146-233 17-106 (221)
80 smart00875 BACK BTB And C-term 33.0 1.4E+02 0.0029 24.0 6.0 25 211-235 2-26 (101)
81 PF00651 BTB: BTB/POZ domain; 32.4 54 0.0012 27.1 3.5 32 238-273 78-110 (111)
82 PF03000 NPH3: NPH3 family; I 20.8 7.1E+02 0.015 24.8 9.4 149 185-338 68-250 (258)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-64 Score=551.94 Aligned_cols=380 Identities=21% Similarity=0.363 Sum_probs=346.3
Q ss_pred CCCceeEEEEe--EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHH
Q 008916 135 WSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLD 212 (549)
Q Consensus 135 ~~~~~dv~l~~--~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~ 212 (549)
.+.+|||++.+ ++|+|||.||||+||||++||+++++|+.+++|+|+ ++++.+++.+|+|+||+++.++. +||++
T Consensus 33 ~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ 109 (571)
T KOG4441|consen 33 EGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQE 109 (571)
T ss_pred hCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHH
Confidence 44588888887 699999999999999999999999999999999999 89999999999999999999999 79999
Q ss_pred HHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCHHHH
Q 008916 213 VLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGV 292 (549)
Q Consensus 213 lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~~~l 292 (549)
||.+|++|||+.+++.|++||++ +++++||+.+..+|+.| +|.+|.+.+..|+..||.++.+ +++|+.||.+++
T Consensus 110 ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l 183 (571)
T KOG4441|consen 110 LLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYILQHFAEVSK-TEEFLLLSLEEL 183 (571)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHH
Confidence 99999999999999999999999 99999999999999999 9999999999999999999999 999999999999
Q ss_pred hcccccCccccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccCCCCCCHHHHHhhcccCCCC--ChhHHHHHHHH
Q 008916 293 EAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVLEA 370 (549)
Q Consensus 293 ~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~~~~~l~--~~~~~~ll~ea 370 (549)
..||++|+|+|.+|.+||+++++|++|| .++|+.++ +.|+++||||+|++.+|.+.+...++. ++.|..++.+|
T Consensus 184 ~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea 259 (571)
T KOG4441|consen 184 IGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEA 259 (571)
T ss_pred HhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 9999999999999999999999999998 77889999 899999999999999999998887765 68999999999
Q ss_pred HHhhhcCCcccccccccccccccc-ccccceeeecc-------CceeeeecCcCCeeee---cccccccceeeecCCcee
Q 008916 371 LFFKAEAPHRQRTLAAEESVTLNR-RFVERAYKYRP-------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVY 439 (549)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~t~~~~r-~~~~~~~~~~~-------~~~v~~~~p~~~~w~~---l~~~r~~~~~~~~~g~iY 439 (549)
++||.. +.+++.+++++++| | ...+.+++.++ ...+++|||..+.|.. |+.+|..+++++++|+||
T Consensus 260 ~~~~~~-~~~~~~~~~~~t~~--r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lY 336 (571)
T KOG4441|consen 260 KKYHLL-PQRRPVMQSPRTRP--RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLY 336 (571)
T ss_pred HHHhhC-cccCccccCCCccc--CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEE
Confidence 999986 55667788999998 6 56677887554 3679999999999998 888999999999999999
Q ss_pred eeeeeecCccc--cccc--cc-------c-----ccCCCcceEEEEEeCeec-------CCcceeeeccccceeecC---
Q 008916 440 SQAFHLGGQGF--FLSA--HC-------N-----MDQQSSFHCFGLFLGMQE-------KGSVSFAVDYEFAARSKP--- 493 (549)
Q Consensus 440 ~~~~v~GG~g~--~~~~--~~-------~-----m~~~r~~~~~~~~~g~i~-------~g~l~~tV~~~~~E~ydp--- 493 (549)
++||+.. .... .+ | |+++|+.+++++++|+|+ ...+. +| |||||
T Consensus 337 ----v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~-sv-----E~YDp~~~ 406 (571)
T KOG4441|consen 337 ----VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLN-SV-----ECYDPVTN 406 (571)
T ss_pred ----EEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccc-cE-----EEecCCCC
Confidence 9999852 2221 12 3 999999999999999993 23455 48 99999
Q ss_pred CcceecCCCce------------EEEEcCccCCC---CceEEc-c----Ccee-------------eeCCeeEEEcCccc
Q 008916 494 TEEFVSKYKGN------------YTFTGGKAVGY---RNLFAI-P----WTSF-------------MADDSLYFINGILH 540 (549)
Q Consensus 494 ~W~~v~~l~~~------------iyv~GG~~~~~---~~v~~y-p----W~~~-------------~~~~~iyviGG~~~ 540 (549)
+|+.++||+.+ ||++||.++.. ++|+|| | |+.+ +++|+||++||...
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 99999999986 99999988766 889999 8 9987 99999999999866
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-58 Score=503.54 Aligned_cols=368 Identities=13% Similarity=0.177 Sum_probs=306.7
Q ss_pred hHhhhccCCCCCceeEEEEe---EEEEchHHHhcccCHHHHHhhcCCCCCCC-cceEEEecCCCcHHHHHHHhHhHhcCc
Q 008916 126 EAANGNESSWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESE-QRHVALRINASEEAALMELLNFMYSNT 201 (549)
Q Consensus 126 ~~~~~~~~~~~~~~dv~l~~---~~f~aHr~iLaa~S~yF~~mf~~~~~Es~-~~~I~L~~~~~~~~~f~~lL~fiYtg~ 201 (549)
.+..+.+. +.+|||+|.+ ++|+|||+||||+|+||++||+++|+|+. +++|+|+ ++++++|+.+|+|+|||+
T Consensus 15 ~l~~lr~~--~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~ 90 (557)
T PHA02713 15 NISNLLDD--DILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH 90 (557)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC
Confidence 34455554 4578888765 58999999999999999999999999874 7899998 999999999999999998
Q ss_pred eecCCcchHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccc
Q 008916 202 LSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQ 281 (549)
Q Consensus 202 l~i~~~~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s 281 (549)
++. +||++||.||++||++.|++.|++||.+ +++++||+.++.+|..+ .+..|.++|.+||.+||.++.+ +
T Consensus 91 --i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~~~L~~~a~~~i~~~f~~v~~-~ 161 (557)
T PHA02713 91 --ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SHIPIVKYIKRMLMSNIPTLIT-T 161 (557)
T ss_pred --CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhC-C
Confidence 566 7999999999999999999999999999 89999999999887777 6778999999999999999999 9
Q ss_pred hhhcCCCHHHHhcccccCc-cccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccCCCCCCHHHHHhhcccCCCC-
Q 008916 282 DEVMALPLAGVEAILSSDD-LQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD- 359 (549)
Q Consensus 282 ~~fl~L~~~~l~~LL~sd~-L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~~~~~l~- 359 (549)
++|++|+.+.|.+||++|+ |+|.+|++||+++++|++|| .++|+ ++ .+||++||||+|++.++.. +..+++.
T Consensus 162 ~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~-~~-~~ll~~VR~~~l~~~~~~~-~~~~~~i~ 235 (557)
T PHA02713 162 DAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEE-QL-LCILSCIDIQNLDKKSRLL-LYSNKTIN 235 (557)
T ss_pred hhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHH-HH-hhhHhhhhHhhcchhhhhh-hcchHHHH
Confidence 9999999999999999988 79999999999999999998 55554 46 5999999999999999874 3344443
Q ss_pred -ChhHHHHHHHHHHhhhcCCccccccccccccccccccccceeeec-----cCceeeeecCcCCeeee---cccccccce
Q 008916 360 -HDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYR-----PVKVVEFERPRQQCVVY---LDLKREECE 430 (549)
Q Consensus 360 -~~~~~~ll~ea~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~-----~~~~v~~~~p~~~~w~~---l~~~r~~~~ 430 (549)
++.|.+++.+|++++.. +| |. ..++..+ ....+++|||.++.|.. ||.+|..++
T Consensus 236 ~~~~c~~~l~~a~~~~~~-------------~~--r~--~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~ 298 (557)
T PHA02713 236 MYPSCIQFLLDNKQNRNI-------------IP--RQ--LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYA 298 (557)
T ss_pred hhHHHHHHHhhhhhhccc-------------CC--cc--eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceE
Confidence 67889999998754321 12 21 2233322 12467899999999997 777888899
Q ss_pred eeecCCceeeeeeeecCcc--cc--ccc-------ccc-----ccCCCcceEEEEEeCeec--CC-----cceeeecccc
Q 008916 431 NLFPSGRVYSQAFHLGGQG--FF--LSA-------HCN-----MDQQSSFHCFGLFLGMQE--KG-----SVSFAVDYEF 487 (549)
Q Consensus 431 ~~~~~g~iY~~~~v~GG~g--~~--~~~-------~~~-----m~~~r~~~~~~~~~g~i~--~g-----~l~~tV~~~~ 487 (549)
+++++|+|| ++||.. .. .+. ..| |+.+|..+++++++|+|+ +| .+. +|
T Consensus 299 ~a~l~~~IY----viGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~-sv---- 369 (557)
T PHA02713 299 SAIVDNEII----IAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVER-TI---- 369 (557)
T ss_pred EEEECCEEE----EEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCc-eE----
Confidence 999999999 999963 11 111 224 999999999999999993 22 233 58
Q ss_pred ceeecC---CcceecCCCce------------EEEEcCccCC--------------------CCceEEc-c----Ccee-
Q 008916 488 AARSKP---TEEFVSKYKGN------------YTFTGGKAVG--------------------YRNLFAI-P----WTSF- 526 (549)
Q Consensus 488 ~E~ydp---~W~~v~~l~~~------------iyv~GG~~~~--------------------~~~v~~y-p----W~~~- 526 (549)
|+||| +|+.++|||.+ ||++||.++. .+++++| | |+.+
T Consensus 370 -e~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 370 -ECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred -EEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 99999 99999999987 9999997632 2579999 8 9876
Q ss_pred ------------eeCCeeEEEcCcc
Q 008916 527 ------------MADDSLYFINGIL 539 (549)
Q Consensus 527 ------------~~~~~iyviGG~~ 539 (549)
+++|+|||+||..
T Consensus 449 ~m~~~r~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 449 NFWTGTIRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred CCCcccccCcEEEECCEEEEEeCCC
Confidence 8899999999964
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.9e-56 Score=478.47 Aligned_cols=364 Identities=16% Similarity=0.183 Sum_probs=292.8
Q ss_pred CCCCceeEEEEe-EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHH
Q 008916 134 SWSMDCSTVVRV-KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLD 212 (549)
Q Consensus 134 ~~~~~~dv~l~~-~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~ 212 (549)
..+.+|||++.+ ++|+|||+|||++|||||+||+++|+|+++ +|.+...++++++|+.+|+|+|||++.++. +||++
T Consensus 18 ~~~~~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ 95 (480)
T PHA02790 18 MTKKFKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVN 95 (480)
T ss_pred hhhhhceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHH
Confidence 345699999987 699999999999999999999999999965 566532389999999999999999999999 79999
Q ss_pred HHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccc--hhhcCCCHH
Q 008916 213 VLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQ--DEVMALPLA 290 (549)
Q Consensus 213 lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s--~~fl~L~~~ 290 (549)
||.||++||++.+++.|++||.+ +|+++||+.++.+|+.| +|.+|.++|.+||.+||.++.+ + ++|+.||.
T Consensus 96 ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L~~- 168 (480)
T PHA02790 96 LLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLLCHTKDFIAKHFLELED-DIIDNFDYLSM- 168 (480)
T ss_pred HHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHHHHHHHHHHHhHHHHhc-ccchhhhhCCH-
Confidence 99999999999999999999999 99999999999999999 9999999999999999999998 7 89999996
Q ss_pred HHhcccccCccccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc-cCCCCCCHHHHHhhcccCCCCChhHHHHHHH
Q 008916 291 GVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARF-IRFPHMTCRKLKKVLTCNDFDHDVASKLVLE 369 (549)
Q Consensus 291 ~l~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~-VRf~~ls~~~L~~~~~~~~l~~~~~~~ll~e 369 (549)
.+||++|+|+|.+|++||+++++|++|+ .+|..++ .+++++ ||+++|++..|.++ ..++.+
T Consensus 169 --~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~l~~~-----------~~~~~~ 230 (480)
T PHA02790 169 --KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRGINNV-----------KWILDC 230 (480)
T ss_pred --HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHHHHHH-----------HHHHHH
Confidence 6799999999999999999999999985 4465555 466666 89999998887542 234445
Q ss_pred HHHhhhcCCcccc--c--ccc-ccc-------ccc-ccccccceeeecc------CceeeeecCcCCeeee---cccccc
Q 008916 370 ALFFKAEAPHRQR--T--LAA-EES-------VTL-NRRFVERAYKYRP------VKVVEFERPRQQCVVY---LDLKRE 427 (549)
Q Consensus 370 a~~~~~~~~~~~~--~--~~~-~~t-------~~~-~r~~~~~~~~~~~------~~~v~~~~p~~~~w~~---l~~~r~ 427 (549)
+..++.....+.. . ... ..+ ... .....+.+|+.++ .+.+++|||.++.|.. |+.+|.
T Consensus 231 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~ 310 (480)
T PHA02790 231 TKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL 310 (480)
T ss_pred HHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh
Confidence 5444432111110 0 000 000 000 0012345777554 3678999999999998 677899
Q ss_pred cceeeecCCceeeeeeeecCccccccc-------ccc-----ccCCCcceEEEEEeCeec--CCc--ceeeeccccceee
Q 008916 428 ECENLFPSGRVYSQAFHLGGQGFFLSA-------HCN-----MDQQSSFHCFGLFLGMQE--KGS--VSFAVDYEFAARS 491 (549)
Q Consensus 428 ~~~~~~~~g~iY~~~~v~GG~g~~~~~-------~~~-----m~~~r~~~~~~~~~g~i~--~g~--l~~tV~~~~~E~y 491 (549)
.+++++++|+|| ++||.+...+. ..| |+++|..|++++++|+|+ +|. ...+| |+|
T Consensus 311 ~~~~v~~~~~iY----viGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~v-----e~y 381 (480)
T PHA02790 311 YASGVPANNKLY----VVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTT-----EYL 381 (480)
T ss_pred cceEEEECCEEE----EECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccE-----EEE
Confidence 999999999999 99997322222 224 999999999999999994 221 11247 999
Q ss_pred cC---CcceecCCCce------------EEEEcCccCCCCceEEc-c----Ccee-------------eeCCeeEEEcCc
Q 008916 492 KP---TEEFVSKYKGN------------YTFTGGKAVGYRNLFAI-P----WTSF-------------MADDSLYFINGI 538 (549)
Q Consensus 492 dp---~W~~v~~l~~~------------iyv~GG~~~~~~~v~~y-p----W~~~-------------~~~~~iyviGG~ 538 (549)
|| +|+.++||+.| |||+||. +++| | |+.+ +++|+||++||.
T Consensus 382 dp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 382 LPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred eCCCCEEEeCCCCCCccccceEEEECCEEEEECCc------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCc
Confidence 99 99999999977 9999973 5788 7 9876 899999999996
Q ss_pred c
Q 008916 539 L 539 (549)
Q Consensus 539 ~ 539 (549)
.
T Consensus 456 ~ 456 (480)
T PHA02790 456 Y 456 (480)
T ss_pred C
Confidence 4
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.2e-53 Score=464.63 Aligned_cols=377 Identities=15% Similarity=0.223 Sum_probs=309.0
Q ss_pred CceeEEEEe----EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHH
Q 008916 137 MDCSTVVRV----KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLD 212 (549)
Q Consensus 137 ~~~dv~l~~----~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~ 212 (549)
.+|||+|.+ ++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++.++. +++.+
T Consensus 8 ~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~~~ 80 (534)
T PHA03098 8 KFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNVKD 80 (534)
T ss_pred CCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHHHH
Confidence 356665554 69999999999999999999999998 5789998 7 999999999999999999999 79999
Q ss_pred HHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCHHHH
Q 008916 213 VLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGV 292 (549)
Q Consensus 213 lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~~~l 292 (549)
||.+|++||++.|++.|++||.+ .++.+||+.++.+|..| ++..|.++|.+||.+||.++.+ +++|++|+.+.|
T Consensus 81 ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~~l 154 (534)
T PHA03098 81 ILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKNEL 154 (534)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHHHH
Confidence 99999999999999999999999 89999999999999999 9999999999999999999999 999999999999
Q ss_pred hcccccCccccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccCCCCCCHHHHHhhcc------cCCCC-ChhHHH
Q 008916 293 EAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLT------CNDFD-HDVASK 365 (549)
Q Consensus 293 ~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~~------~~~l~-~~~~~~ 365 (549)
..||++|+|+|.+|++||+++++|++++ .++|.+++ ++||++|||++|++++|.+++. ++.+. ++.|..
T Consensus 155 ~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 230 (534)
T PHA03098 155 IKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIK 230 (534)
T ss_pred HHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchH
Confidence 9999999999999999999999999998 77888888 8999999999999999998764 44444 566778
Q ss_pred HHHHHHHhhhcCCcccc----cc-c---------------cc-------cccccccc-----cccceeeecc-------C
Q 008916 366 LVLEALFFKAEAPHRQR----TL-A---------------AE-------ESVTLNRR-----FVERAYKYRP-------V 406 (549)
Q Consensus 366 ll~ea~~~~~~~~~~~~----~~-~---------------~~-------~t~~~~r~-----~~~~~~~~~~-------~ 406 (549)
++.++..++.....+.+ .+ . .. ...+.... ..+.+|+.++ .
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~ 310 (534)
T PHA03098 231 IIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSV 310 (534)
T ss_pred HHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCee
Confidence 88887765421100100 00 0 00 00010011 1145666554 2
Q ss_pred ceeeeecCcCCeeee---cccccccceeeecCCceeeeeeeecCccc---ccc-------cccc-----ccCCCcceEEE
Q 008916 407 KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGF---FLS-------AHCN-----MDQQSSFHCFG 468 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~---l~~~r~~~~~~~~~g~iY~~~~v~GG~g~---~~~-------~~~~-----m~~~r~~~~~~ 468 (549)
+.+.+|||.+++|.. |+.+|..|++++++|+|| ++||.+. ..+ ...| |+.+|..++++
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ly----v~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~ 386 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIY----VIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV 386 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECCEEE----EEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE
Confidence 468899999999988 566899999999999999 9999741 111 2224 89999999999
Q ss_pred EEeCeec--CC-----cceeeeccccceeecC---CcceecCCCce------------EEEEcCccCCC-----CceEEc
Q 008916 469 LFLGMQE--KG-----SVSFAVDYEFAARSKP---TEEFVSKYKGN------------YTFTGGKAVGY-----RNLFAI 521 (549)
Q Consensus 469 ~~~g~i~--~g-----~l~~tV~~~~~E~ydp---~W~~v~~l~~~------------iyv~GG~~~~~-----~~v~~y 521 (549)
+++|+++ +| ....+| |+||| +|+.+++||.+ ||++||.+... +.+++|
T Consensus 387 ~~~~~iYv~GG~~~~~~~~~~v-----~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 461 (534)
T PHA03098 387 NVNNLIYVIGGISKNDELLKTV-----ECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESY 461 (534)
T ss_pred EECCEEEEECCcCCCCcccceE-----EEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEe
Confidence 9999993 22 111247 99999 89999999976 99999976432 459999
Q ss_pred -c----Ccee-------------eeCCeeEEEcCcc
Q 008916 522 -P----WTSF-------------MADDSLYFINGIL 539 (549)
Q Consensus 522 -p----W~~~-------------~~~~~iyviGG~~ 539 (549)
| |+.+ +++++||++||..
T Consensus 462 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 462 NPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDK 497 (534)
T ss_pred cCCCCceeeCCCCCcccccceEEEECCEEEEEcCCc
Confidence 8 9876 7899999999964
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=2.3e-31 Score=263.51 Aligned_cols=232 Identities=21% Similarity=0.301 Sum_probs=209.6
Q ss_pred hhhHhhhccCCCCCceeEEEEeEEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCcee
Q 008916 124 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLS 203 (549)
Q Consensus 124 ~d~~~~~~~~~~~~~~dv~l~~~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~ 203 (549)
+..++.++.+....|+.++++.++|+|||+|||+||.|||+|+.++|.|+.+..|.|+ +-..++|+.+|+|||||++.
T Consensus 32 S~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~ 109 (620)
T KOG4350|consen 32 SQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKID 109 (620)
T ss_pred hHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhccee
Confidence 5678889999998899999998999999999999999999999999999999999998 77899999999999999998
Q ss_pred cCCc--chHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccc
Q 008916 204 TTAA--PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQ 281 (549)
Q Consensus 204 i~~~--~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s 281 (549)
+... +.+++.|.+|++|++..|..+..+||++ -+..+|++.++..|..| +.++|.+.|..|+-+|..++.. .
T Consensus 110 l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~C~mfmDrnA~~lL~-~ 183 (620)
T KOG4350|consen 110 LAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDYCMMFMDRNADQLLE-D 183 (620)
T ss_pred cccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHHHHHHHhcCHHhhhc-C
Confidence 7643 6789999999999999999999999999 79999999999999999 8999999999999999999999 9
Q ss_pred hhhcCCCHHHHhcccccCccccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccCCCCCCHHHHHhhcccCCCCCh
Q 008916 282 DEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHD 361 (549)
Q Consensus 282 ~~fl~L~~~~l~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~~~~~l~~~ 361 (549)
+.|..|+.+.|+++|.+|.... -|.++|.|+.+|-++| .+ +.. +.+++.||+|+|+..+|.+++.+..+.++
T Consensus 184 ~sFn~LSk~sL~e~l~RDsFfA-pE~~IFlAv~~W~~~N---sk---e~~-k~~~~~VRLPLm~lteLLnvVRPsGllsp 255 (620)
T KOG4350|consen 184 PSFNRLSKDSLKELLARDSFFA-PELKIFLAVRSWHQNN---SK---EAS-KVLLELVRLPLMTLTELLNVVRPSGLLSP 255 (620)
T ss_pred cchhhhhHHHHHHHHhhhcccc-hHHHHHHHHHHHHhcC---ch---hhH-HHHHHHHhhhhccHHHHHhccCcccCcCH
Confidence 9999999999999999999864 8999999999999998 32 223 57899999999999999999999887643
Q ss_pred hHHHHHHHHHHhh
Q 008916 362 VASKLVLEALFFK 374 (549)
Q Consensus 362 ~~~~ll~ea~~~~ 374 (549)
+.|++|+.-.
T Consensus 256 ---D~iLDAI~vr 265 (620)
T KOG4350|consen 256 ---DTILDAIEVR 265 (620)
T ss_pred ---HHHHHHHHhh
Confidence 3455565543
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.91 E-value=8e-24 Score=215.35 Aligned_cols=223 Identities=23% Similarity=0.370 Sum_probs=198.9
Q ss_pred hHhhhccCCCCCceeEEEEe-----EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcC
Q 008916 126 EAANGNESSWSMDCSTVVRV-----KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSN 200 (549)
Q Consensus 126 ~~~~~~~~~~~~~~dv~l~~-----~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg 200 (549)
....++.+....||.+++.. +.|||||.|||..|.+|.+||++++.+....+|+++ ++++.+|..+|+|||++
T Consensus 104 r~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsd 181 (521)
T KOG2075|consen 104 RQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSD 181 (521)
T ss_pred hhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcc
Confidence 34567888888889888884 489999999999999999999999999877889998 99999999999999999
Q ss_pred ceecCCcchHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHh-hhhcccccChHHHHHHHHHHHHhhhhhhhc
Q 008916 201 TLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL-PSSVLMGEAVQPLTDAARQYLASRYKDMTK 279 (549)
Q Consensus 201 ~l~i~~~~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~l-A~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 279 (549)
.+.+.. ++++.+|.+|++|.++.|.+.|.+||+. ++.+.|.+..+.. |..+ .-++|.+.|++-|..+|+....
T Consensus 182 ev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~id~~~~~al~ 255 (521)
T KOG2075|consen 182 EVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVIDKSFEDALT 255 (521)
T ss_pred hhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHhhhHHHhhhC
Confidence 999998 7999999999999999999999999999 7888888877765 7666 7899999999999999999999
Q ss_pred cchhhcCCC--HHHHhcccccCccccCChHHHHHHHHHHHHHhCC------ChHHHHHHHHHHhhcccCCCCCCHHHHHh
Q 008916 280 FQDEVMALP--LAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP------RVEERREVLGSRLARFIRFPHMTCRKLKK 351 (549)
Q Consensus 280 ~s~~fl~L~--~~~l~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~------~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~ 351 (549)
.+.|.... .+.++++|+++.|.+ +|..+|+|+++|+...+. +...+++.+ .+.+..||||+|..+++..
T Consensus 256 -~EGf~did~~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eefa~ 332 (521)
T KOG2075|consen 256 -PEGFCDIDSTRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEFAR 332 (521)
T ss_pred -ccceeehhhHHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhhcc
Confidence 99999888 999999999999998 599999999999988542 344567777 7999999999999999887
Q ss_pred hcccCCCC
Q 008916 352 VLTCNDFD 359 (549)
Q Consensus 352 ~~~~~~l~ 359 (549)
-+.+..+.
T Consensus 333 ~~e~sgIl 340 (521)
T KOG2075|consen 333 GVEQSGIL 340 (521)
T ss_pred CccccCCc
Confidence 66666664
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.78 E-value=7.1e-19 Score=175.42 Aligned_cols=183 Identities=17% Similarity=0.279 Sum_probs=165.5
Q ss_pred HhhhccCCCCCceeEEEEe--EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEe--cCCCcHHHHHHHhHhHhcCce
Q 008916 127 AANGNESSWSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALR--INASEEAALMELLNFMYSNTL 202 (549)
Q Consensus 127 ~~~~~~~~~~~~~dv~l~~--~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~--~~~~~~~~f~~lL~fiYtg~l 202 (549)
+..++.... -.||++.. ++.+.||.-| ..|+||.+||.|.|+|+++..|.|. ++.++..+|..++.-+|.+++
T Consensus 60 yq~lf~q~e--nSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 60 YQNLFLQGE--NSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHhcCC--Ccceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 345555444 55666654 8999999999 5699999999999999999877666 567899999999999999999
Q ss_pred ecCCcchHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccch
Q 008916 203 STTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQD 282 (549)
Q Consensus 203 ~i~~~~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~ 282 (549)
.|+. +.|..+|.+|.++++++|.+.|.+.|.+ .|++.|++.++..+..| +.+.+++.|.+++..|+..+.. ..
T Consensus 137 eI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~vk~kc~ewl~~nl~~i~~-~q 209 (488)
T KOG4682|consen 137 EIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESVKKKCLEWLLNNLMTIQN-VQ 209 (488)
T ss_pred eccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHHHHHHHHHHHHhhHhhhh-HH
Confidence 9999 7999999999999999999999999999 99999999999999999 9999999999999999999998 77
Q ss_pred hhcCCCHHHHhcccccCccccCC-hHHHHHHHHHHHHH
Q 008916 283 EVMALPLAGVEAILSSDDLQIAS-EDAVYDFVLKWARA 319 (549)
Q Consensus 283 ~fl~L~~~~l~~LL~sd~L~v~s-E~~V~~av~~Wi~~ 319 (549)
-+.+++.+.+..+|.|.+|-|-+ |..+|..+..|+--
T Consensus 210 ~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfL 247 (488)
T KOG4682|consen 210 LLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFL 247 (488)
T ss_pred HHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHh
Confidence 88899999999999999998877 99999999999754
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=182.14 Aligned_cols=133 Identities=22% Similarity=0.292 Sum_probs=110.7
Q ss_pred cceeeecc-------CceeeeecCcCCeeee---cccccccceeeecCCceeeeeeeecCcc---ccccccc-------c
Q 008916 398 ERAYKYRP-------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG---FFLSAHC-------N 457 (549)
Q Consensus 398 ~~~~~~~~-------~~~v~~~~p~~~~w~~---l~~~r~~~~~~~~~g~iY~~~~v~GG~g---~~~~~~~-------~ 457 (549)
..+|+.|+ ++++++|||+.++|.. |+.+|..+++++++|.|| ++||+. ...+.+| |
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iY----avGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLY----AVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEE----EEeccccccccccEEEecCCCCcc
Confidence 44676433 4789999999999999 778899999999999999 999983 2223333 3
Q ss_pred -----ccCCCcceEEEEEeCeec--CC------cceeeeccccceeecC---CcceecCCCce------------EEEEc
Q 008916 458 -----MDQQSSFHCFGLFLGMQE--KG------SVSFAVDYEFAARSKP---TEEFVSKYKGN------------YTFTG 509 (549)
Q Consensus 458 -----m~~~r~~~~~~~~~g~i~--~g------~l~~tV~~~~~E~ydp---~W~~v~~l~~~------------iyv~G 509 (549)
|.++|..|++++++|+|+ .| .+. +| |+||| +|+.++||+.+ ||++|
T Consensus 409 ~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~-sv-----e~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvG 482 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN-SV-----ECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVG 482 (571)
T ss_pred cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc-eE-----EEEcCCCCceeecCCcccccccceEEEECCEEEEEC
Confidence 999999999999999993 22 455 48 99999 99999999997 99999
Q ss_pred CccCCC--CceEEc-c----Ccee-------------eeCCeeEEEcCccc
Q 008916 510 GKAVGY--RNLFAI-P----WTSF-------------MADDSLYFINGILH 540 (549)
Q Consensus 510 G~~~~~--~~v~~y-p----W~~~-------------~~~~~iyviGG~~~ 540 (549)
|+++.. ++||+| | |+.+ +++++||++||..+
T Consensus 483 G~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred CccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence 999844 779999 8 9887 89999999999643
No 9
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.72 E-value=3.8e-18 Score=145.73 Aligned_cols=102 Identities=34% Similarity=0.634 Sum_probs=92.9
Q ss_pred HHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCHHHHhcccccCccccCChHHHHHHHHHHHHHhCC
Q 008916 243 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 322 (549)
Q Consensus 243 ~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~~~l~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~ 322 (549)
|+.++.+|..| ++.+|.++|.+||..||.++.+ +++|.+||.+.+..||++++|++.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 88999999999 9999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHhhcccCCCCCCHHHHHhhc
Q 008916 323 RVEERREVLGSRLARFIRFPHMTCRKLKKVL 353 (549)
Q Consensus 323 ~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~ 353 (549)
+++|.+++ ..|+++|||++|++++|.+++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCC
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHH
Confidence 77788888 899999999999999998865
No 10
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.67 E-value=1.1e-16 Score=138.42 Aligned_cols=105 Identities=27% Similarity=0.430 Sum_probs=88.9
Q ss_pred hhhccCCCCCceeEEEE-eEEEEchHHHhcccCHHHHHhhcCC-CCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecC
Q 008916 128 ANGNESSWSMDCSTVVR-VKTLHISSPILAAKSPFFYKLFSNG-MKESEQRHVALRINASEEAALMELLNFMYSNTLSTT 205 (549)
Q Consensus 128 ~~~~~~~~~~~~dv~l~-~~~f~aHr~iLaa~S~yF~~mf~~~-~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~ 205 (549)
.+++++....|+.+.+. +++|+|||.||+++|+||++||.+. +.+.....|.++ ++++++|+.+++|+|++++.++
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEEEE
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCcccCC
Confidence 34556666556666666 5799999999999999999999997 566665677777 9999999999999999999998
Q ss_pred -CcchHHHHHHHHhhccccchHHHHHHHHHc
Q 008916 206 -AAPALLDVLMAADKFEVASCMRYCSRLLRN 235 (549)
Q Consensus 206 -~~~~v~~lL~aA~~l~l~~L~~~C~~~L~~ 235 (549)
. +++.+++.+|++|+++.|++.|+++|.+
T Consensus 80 ~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 SD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 7 7999999999999999999999999976
No 11
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.64 E-value=3.6e-16 Score=142.52 Aligned_cols=163 Identities=18% Similarity=0.294 Sum_probs=136.5
Q ss_pred hhhccCCCCCceeEEEEe---EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceec
Q 008916 128 ANGNESSWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLST 204 (549)
Q Consensus 128 ~~~~~~~~~~~~dv~l~~---~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i 204 (549)
..+++..+.+|..+.+.+ +.++|||.|||+||++.+ |.++-.| +.....+. +.++++|..+++||||+++.+
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~d--Dad~Ea~~t~iRWIYTDEidf 132 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLD--DADFEAFHTAIRWIYTDEIDF 132 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhccc--ccCHHHHHHhheeeecccccc
Confidence 346666666666666664 689999999999999885 3333222 22344454 899999999999999999997
Q ss_pred CCc-chHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchh
Q 008916 205 TAA-PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDE 283 (549)
Q Consensus 205 ~~~-~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~ 283 (549)
... ..+.++...|+.|+++-|++.|++-+.. .++++||+.++.+|+.. +...|...|...|+.++..+-. .+
T Consensus 133 k~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~eiIA~~W~dL~~--a~ 205 (280)
T KOG4591|consen 133 KEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAEIIAGAWDDLGK--AD 205 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHHHHHhhccccCh--HH
Confidence 653 4688999999999999999999999999 69999999999999998 8999999999999999999876 89
Q ss_pred hcCCCHHHHhcccccCccc
Q 008916 284 VMALPLAGVEAILSSDDLQ 302 (549)
Q Consensus 284 fl~L~~~~l~~LL~sd~L~ 302 (549)
|.+++...+..++.++.=+
T Consensus 206 FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 206 FAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred HHhccHHHHHHHHcCCCcc
Confidence 9999999999999887543
No 12
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.63 E-value=1.1e-15 Score=129.66 Aligned_cols=99 Identities=27% Similarity=0.519 Sum_probs=90.8
Q ss_pred HHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCHHHHhcccccCccccCChHHHHHHHHHHHHHhCC
Q 008916 243 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 322 (549)
Q Consensus 243 ~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~~~l~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~ 322 (549)
|+.++.+|+.| ++..|.+.|.+||.+||..+.+ +++|++||.+.+..||++|+|+|.+|.++|+++++|++++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 56788888888 8999999999999999999999 8999999999999999999999989999999999999998
Q ss_pred ChHHHHHHHHHHhhcccCCCCCCHHHHHh
Q 008916 323 RVEERREVLGSRLARFIRFPHMTCRKLKK 351 (549)
Q Consensus 323 ~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~ 351 (549)
...|. ++ ..++++|||++|++.+|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 44444 66 7999999999999998875
No 13
>PHA02713 hypothetical protein; Provisional
Probab=99.61 E-value=2.3e-15 Score=165.91 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=106.7
Q ss_pred cceeeecc-------CceeeeecCcCCeeee---cccccccceeeecCCceeeeeeeecCcc-c--ccccc-------cc
Q 008916 398 ERAYKYRP-------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG-F--FLSAH-------CN 457 (549)
Q Consensus 398 ~~~~~~~~-------~~~v~~~~p~~~~w~~---l~~~r~~~~~~~~~g~iY~~~~v~GG~g-~--~~~~~-------~~ 457 (549)
+.+|+.|+ .+.+++|||.++.|.. |+.+|..+++++++|+|| ++||.. . ..+.. .|
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IY----viGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY----AIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEE----EECCcCCCCCCceEEEEECCCCeE
Confidence 56777554 3568999999999988 677899999999999999 999973 1 11222 24
Q ss_pred -----ccCCCcceEEEEEeCeec--CCcc----------------------eeeeccccceeecC---CcceecCCCce-
Q 008916 458 -----MDQQSSFHCFGLFLGMQE--KGSV----------------------SFAVDYEFAARSKP---TEEFVSKYKGN- 504 (549)
Q Consensus 458 -----m~~~r~~~~~~~~~g~i~--~g~l----------------------~~tV~~~~~E~ydp---~W~~v~~l~~~- 504 (549)
|+++|..+++++++|+|+ +|.. ..+| |+||| +|+.++||+.+
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----e~YDP~td~W~~v~~m~~~r 454 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKV-----IRYDTVNNIWETLPNFWTGT 454 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceE-----EEECCCCCeEeecCCCCccc
Confidence 999999999999999994 2210 1247 99999 99999999886
Q ss_pred -----------EEEEcCccCCC---CceEEc-c-----Ccee-------------eeCCeeEEEcCccc
Q 008916 505 -----------YTFTGGKAVGY---RNLFAI-P-----WTSF-------------MADDSLYFINGILH 540 (549)
Q Consensus 505 -----------iyv~GG~~~~~---~~v~~y-p-----W~~~-------------~~~~~iyviGG~~~ 540 (549)
|||+||.++.. ..+++| | |+.+ +++|+||++||...
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecc
Confidence 99999987433 458999 8 8765 99999999999654
No 14
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.56 E-value=8.7e-15 Score=120.28 Aligned_cols=88 Identities=28% Similarity=0.481 Sum_probs=80.3
Q ss_pred eEEEEeEEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHHHHHHHhh
Q 008916 140 STVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADK 219 (549)
Q Consensus 140 dv~l~~~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aA~~ 219 (549)
.+.+..++|++||.+|+++|+||++||.+++.++....+.++ +.++.+|+.+|+|+|++++.++. .++.+++.+|++
T Consensus 3 ~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a~~ 79 (90)
T smart00225 3 TLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELADY 79 (90)
T ss_pred EEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHHHH
Confidence 344455799999999999999999999998888777889998 89999999999999999999998 699999999999
Q ss_pred ccccchHHHHH
Q 008916 220 FEVASCMRYCS 230 (549)
Q Consensus 220 l~l~~L~~~C~ 230 (549)
|+++.|++.|+
T Consensus 80 ~~~~~l~~~c~ 90 (90)
T smart00225 80 LQIPGLVELCE 90 (90)
T ss_pred HCcHHHHhhhC
Confidence 99999999884
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.50 E-value=1.1e-12 Score=144.83 Aligned_cols=263 Identities=12% Similarity=0.116 Sum_probs=163.5
Q ss_pred CCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCHHHHhcccccCccccCChHHHHHHHHHH
Q 008916 237 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKW 316 (549)
Q Consensus 237 ~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~~~l~~LL~sd~L~v~sE~~V~~av~~W 316 (549)
.++.+|+..++..|..+ ..+.|++.|.+|+..++.. .+ .-+++.+. .. .+-.++.+++..+
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~-~n-c~~~~~~a-----~~--------~~~~~L~~~~~~~ 132 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDD-NN-CIDIYRFS-----FF--------YGCKKLYSAAYNY 132 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCH-hH-HHHHHHHH-----HH--------cCcHHHHHHHHHH
Confidence 57899999999999999 8999999999999876431 11 11222211 00 1224566667777
Q ss_pred HHHhCCChHHHHHHHHHHhhcccCCCCCCHHHHHhhcccCCCC--Chh-HHHHHH------------------HHHHhhh
Q 008916 317 ARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDV-ASKLVL------------------EALFFKA 375 (549)
Q Consensus 317 i~~~~~~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~~~~~l~--~~~-~~~ll~------------------ea~~~~~ 375 (549)
+..| + ..+.+.=.|..|+.+.|.++++++.+. ++. ..+.+. +.+++..
T Consensus 133 i~~n----------f-~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~ 201 (534)
T PHA03098 133 IRNN----------I-ELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITF 201 (534)
T ss_pred HHHH----------H-HHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccc
Confidence 7654 2 456666677778888888877776653 111 111111 1111111
Q ss_pred cCCc-------------ccccccccc--------------ccccccccccceeeecc----CceeeeecCcCCeeeeccc
Q 008916 376 EAPH-------------RQRTLAAEE--------------SVTLNRRFVERAYKYRP----VKVVEFERPRQQCVVYLDL 424 (549)
Q Consensus 376 ~~~~-------------~~~~~~~~~--------------t~~~~r~~~~~~~~~~~----~~~v~~~~p~~~~w~~l~~ 424 (549)
.++. ..+++.++. ..++.+.....+++.++ ...+.+|++..++|..++.
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 281 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIID 281 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccC
Confidence 0000 000000000 01100111122222111 2345678888999988653
Q ss_pred -c-cccceeeecCCceeeeeeeecCcccc--c--c-------cccc-----ccCCCcceEEEEEeCeec--CC-----cc
Q 008916 425 -K-REECENLFPSGRVYSQAFHLGGQGFF--L--S-------AHCN-----MDQQSSFHCFGLFLGMQE--KG-----SV 479 (549)
Q Consensus 425 -~-r~~~~~~~~~g~iY~~~~v~GG~g~~--~--~-------~~~~-----m~~~r~~~~~~~~~g~i~--~g-----~l 479 (549)
+ +..++++++++.|| ++||.+.. . . ...| |+.+|.+|++++++|+++ +| .+
T Consensus 282 ~~~~~~~~~~~~~~~ly----v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~ 357 (534)
T PHA03098 282 IHYVYCFGSVVLNNVIY----FIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISL 357 (534)
T ss_pred ccccccceEEEECCEEE----EECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEec
Confidence 2 33458999999999 99997321 1 1 1224 899999999999999993 22 23
Q ss_pred eeeeccccceeecC---CcceecCCCce------------EEEEcCccCCC---CceEEc-c----Ccee----------
Q 008916 480 SFAVDYEFAARSKP---TEEFVSKYKGN------------YTFTGGKAVGY---RNLFAI-P----WTSF---------- 526 (549)
Q Consensus 480 ~~tV~~~~~E~ydp---~W~~v~~l~~~------------iyv~GG~~~~~---~~v~~y-p----W~~~---------- 526 (549)
+ +| |+||| +|+.+++||.| ||++||...+. +++++| | |+.+
T Consensus 358 ~-~v-----~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 431 (534)
T PHA03098 358 N-TV-----ESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG 431 (534)
T ss_pred c-eE-----EEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc
Confidence 3 47 99999 99999999987 99999975432 779999 7 9876
Q ss_pred ---eeCCeeEEEcCcc
Q 008916 527 ---MADDSLYFINGIL 539 (549)
Q Consensus 527 ---~~~~~iyviGG~~ 539 (549)
+++++||++||..
T Consensus 432 ~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 432 CAIYHDGKIYVIGGIS 447 (534)
T ss_pred eEEEECCEEEEECCcc
Confidence 7899999999964
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.49 E-value=2e-14 Score=154.10 Aligned_cols=147 Identities=13% Similarity=0.233 Sum_probs=123.8
Q ss_pred CCCCceeEEEEeE-EEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHh-cCceecCC----c
Q 008916 134 SWSMDCSTVVRVK-TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMY-SNTLSTTA----A 207 (549)
Q Consensus 134 ~~~~~~dv~l~~~-~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiY-tg~l~i~~----~ 207 (549)
....||+|++..+ .++|||++|.||++||..||..-|.|+.. |++....+..+.++.+|+|+| +++..+-. .
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~ 785 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKES 785 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchh
Confidence 5556899999874 69999999999999999999998988776 444423677999999999999 45444321 1
Q ss_pred chHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCC
Q 008916 208 PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL 287 (549)
Q Consensus 208 ~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L 287 (549)
+.+.++|..||.|-+.+|+..|+..|.+ .++..||-.++++|..| ++..|+..|++||+.|+..+.. .....++
T Consensus 786 dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~L~~~C~dfic~N~~~~Le-arsi~~~ 859 (1267)
T KOG0783|consen 786 DFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKELYSRCIDFICHNIEFFLE-ARSISEW 859 (1267)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHHHHHHHHHHHHHhHHHHHH-hccHhhh
Confidence 5788999999999999999999999999 89999999999999999 9999999999999999988876 4444333
Q ss_pred C
Q 008916 288 P 288 (549)
Q Consensus 288 ~ 288 (549)
+
T Consensus 860 d 860 (1267)
T KOG0783|consen 860 D 860 (1267)
T ss_pred c
Confidence 3
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.34 E-value=3e-12 Score=139.12 Aligned_cols=113 Identities=14% Similarity=-0.022 Sum_probs=92.0
Q ss_pred cceeeeccC---ceeeeecCcCCeeee---cccccccceeeecCCceeeeeeeecCcccc-cccc-------cc-----c
Q 008916 398 ERAYKYRPV---KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGFF-LSAH-------CN-----M 458 (549)
Q Consensus 398 ~~~~~~~~~---~~v~~~~p~~~~w~~---l~~~r~~~~~~~~~g~iY~~~~v~GG~g~~-~~~~-------~~-----m 458 (549)
+.+|+.++. ..+++|||.+++|.. |+.+|..+++++++|+|| ++||.... .+.. .| |
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY----viGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY----VIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE----EecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 567876653 679999999999988 677899999999999999 99997321 1122 24 9
Q ss_pred cCCCcceEEEEEeCeec-CCcceeeeccccceeecC---CcceecCCCce------------EEEEcCccCCC--CceEE
Q 008916 459 DQQSSFHCFGLFLGMQE-KGSVSFAVDYEFAARSKP---TEEFVSKYKGN------------YTFTGGKAVGY--RNLFA 520 (549)
Q Consensus 459 ~~~r~~~~~~~~~g~i~-~g~l~~tV~~~~~E~ydp---~W~~v~~l~~~------------iyv~GG~~~~~--~~v~~ 520 (549)
+.+|..+++++++|+|+ -|. .+ |+||| +|+.++||+.+ ||++||.+++. +++++
T Consensus 395 ~~~r~~~~~~~~~~~IYv~GG---~~-----e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVGR---NA-----EFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred CCccccceEEEECCEEEEECC---ce-----EEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence 99999999999999995 222 25 99999 99999999986 99999987543 77999
Q ss_pred c-c
Q 008916 521 I-P 522 (549)
Q Consensus 521 y-p 522 (549)
| |
T Consensus 467 Yd~ 469 (480)
T PHA02790 467 YNN 469 (480)
T ss_pred EEC
Confidence 9 8
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.20 E-value=8.3e-11 Score=121.49 Aligned_cols=133 Identities=16% Similarity=0.126 Sum_probs=98.7
Q ss_pred cceeeecc------CceeeeecCcCCee----ee---cccccccceeeecCCceeeeeeeecCcc---c-------cccc
Q 008916 398 ERAYKYRP------VKVVEFERPRQQCV----VY---LDLKREECENLFPSGRVYSQAFHLGGQG---F-------FLSA 454 (549)
Q Consensus 398 ~~~~~~~~------~~~v~~~~p~~~~w----~~---l~~~r~~~~~~~~~g~iY~~~~v~GG~g---~-------~~~~ 454 (549)
+.+|+.++ .+.+++||+.+++| .. ||.+|..+++++.+++|| ++||.. . ....
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY----v~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY----VGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE----EEeCcCCCccCceEEEEcCCC
Confidence 56777554 36789999998888 44 677888999999999999 999961 1 1112
Q ss_pred ccc-----cc-CCCcceEEEEEeCeec--CCc---ceeeeccccceeecC---CcceecCCCc---e-------------
Q 008916 455 HCN-----MD-QQSSFHCFGLFLGMQE--KGS---VSFAVDYEFAARSKP---TEEFVSKYKG---N------------- 504 (549)
Q Consensus 455 ~~~-----m~-~~r~~~~~~~~~g~i~--~g~---l~~tV~~~~~E~ydp---~W~~v~~l~~---~------------- 504 (549)
..| |+ .+|..+++++++++|+ .|. ....+ ++||| +|+.+++|+. |
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~-----~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~ 223 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDG-----YKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE 223 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccce-----EEEecCCCeeEECCCCCCCCCceeccceeEEEECC
Confidence 234 65 4799999999999993 221 11235 89999 9999998631 1
Q ss_pred --EEEEcCccCC----------------------------------CCceEEc-c----Ccee--------------eeC
Q 008916 505 --YTFTGGKAVG----------------------------------YRNLFAI-P----WTSF--------------MAD 529 (549)
Q Consensus 505 --iyv~GG~~~~----------------------------------~~~v~~y-p----W~~~--------------~~~ 529 (549)
||++||.+.. .+++++| | |+.+ +++
T Consensus 224 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 224 SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTG 303 (323)
T ss_pred CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEEC
Confidence 9999998632 1469999 7 9865 889
Q ss_pred CeeEEEcCcc
Q 008916 530 DSLYFINGIL 539 (549)
Q Consensus 530 ~~iyviGG~~ 539 (549)
++||++||..
T Consensus 304 ~~iyv~GG~~ 313 (323)
T TIGR03548 304 NNIFSINGEL 313 (323)
T ss_pred CEEEEEeccc
Confidence 9999999963
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.11 E-value=3.6e-10 Score=117.86 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=87.7
Q ss_pred ceeeeecCcCCeeeecc--ccc--ccceee-ecCCceeeeeeeecCcccc------------------------------
Q 008916 407 KVVEFERPRQQCVVYLD--LKR--EECENL-FPSGRVYSQAFHLGGQGFF------------------------------ 451 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~l~--~~r--~~~~~~-~~~g~iY~~~~v~GG~g~~------------------------------ 451 (549)
+.+++|||.+++|..++ .+| ..++++ +++|+|| ++||....
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IY----viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAY----FTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEE----EEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 56899999999999954 333 334444 6899999 99997310
Q ss_pred -------ccccc-------c-----ccC-CCcceEEEEEeCeec--CCc----ce-eeeccccceeec--C---Ccceec
Q 008916 452 -------LSAHC-------N-----MDQ-QSSFHCFGLFLGMQE--KGS----VS-FAVDYEFAARSK--P---TEEFVS 499 (549)
Q Consensus 452 -------~~~~~-------~-----m~~-~r~~~~~~~~~g~i~--~g~----l~-~tV~~~~~E~yd--p---~W~~v~ 499 (549)
.+..+ | |+. +|..+++++++|+|+ .|. +. ..+ +.|+ | +|+.++
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~-----~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEV-----KQYLFTGGKLEWNKLP 235 (346)
T ss_pred hhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchhe-----EEEEecCCCceeeecC
Confidence 11122 3 775 688999999999993 222 11 123 4565 4 899999
Q ss_pred CCCce-------------------EEEEcCccCC----------------C---CceEEc-c----Ccee----------
Q 008916 500 KYKGN-------------------YTFTGGKAVG----------------Y---RNLFAI-P----WTSF---------- 526 (549)
Q Consensus 500 ~l~~~-------------------iyv~GG~~~~----------------~---~~v~~y-p----W~~~---------- 526 (549)
+|+.+ |||+||.+.. . .++++| | |+.+
T Consensus 236 ~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~ 315 (346)
T TIGR03547 236 PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYG 315 (346)
T ss_pred CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceee
Confidence 99641 9999997521 0 258899 6 9876
Q ss_pred ---eeCCeeEEEcCccc
Q 008916 527 ---MADDSLYFINGILH 540 (549)
Q Consensus 527 ---~~~~~iyviGG~~~ 540 (549)
+++|+|||+||...
T Consensus 316 ~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 316 VSVSWNNGVLLIGGENS 332 (346)
T ss_pred EEEEcCCEEEEEeccCC
Confidence 68999999999643
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.10 E-value=4.7e-10 Score=115.88 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=86.0
Q ss_pred eeee---cccccccceeeecCCceeeeeeeecCccc---c-------ccccc----c-----ccCCCcceEEEEEeCeec
Q 008916 418 CVVY---LDLKREECENLFPSGRVYSQAFHLGGQGF---F-------LSAHC----N-----MDQQSSFHCFGLFLGMQE 475 (549)
Q Consensus 418 ~w~~---l~~~r~~~~~~~~~g~iY~~~~v~GG~g~---~-------~~~~~----~-----m~~~r~~~~~~~~~g~i~ 475 (549)
.|.. ||.+|..++++++++.|| ++||... . ..... | |+.+|..|+.++++|+|+
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~ly----viGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY 127 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIY----YIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY 127 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEE----EEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE
Confidence 6887 788888888888999999 9999731 0 11111 2 888999999999999993
Q ss_pred --CC----cceeeeccccceeecC---CcceecCCCc-e------------EEEEcCccCCC-CceEEc-c----Ccee-
Q 008916 476 --KG----SVSFAVDYEFAARSKP---TEEFVSKYKG-N------------YTFTGGKAVGY-RNLFAI-P----WTSF- 526 (549)
Q Consensus 476 --~g----~l~~tV~~~~~E~ydp---~W~~v~~l~~-~------------iyv~GG~~~~~-~~v~~y-p----W~~~- 526 (549)
.| .....| ++||| +|+.+++||. + |||+||.+... .++++| | |+.+
T Consensus 128 v~GG~~~~~~~~~v-----~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 128 VGGGNRNGKPSNKS-----YLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred EEeCcCCCccCceE-----EEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 22 122347 99999 9999999875 2 99999987543 568999 8 9765
Q ss_pred ------------------eeCCeeEEEcCcc
Q 008916 527 ------------------MADDSLYFINGIL 539 (549)
Q Consensus 527 ------------------~~~~~iyviGG~~ 539 (549)
+.+++|||+||..
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 2268999999964
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.09 E-value=5.5e-10 Score=116.46 Aligned_cols=133 Identities=12% Similarity=0.001 Sum_probs=91.4
Q ss_pred cceeeeccC--ceeeeecC--cCCeeee---cc-cccccceeeecCCceeeeeeeecCcccc---------cccc-----
Q 008916 398 ERAYKYRPV--KVVEFERP--RQQCVVY---LD-LKREECENLFPSGRVYSQAFHLGGQGFF---------LSAH----- 455 (549)
Q Consensus 398 ~~~~~~~~~--~~v~~~~p--~~~~w~~---l~-~~r~~~~~~~~~g~iY~~~~v~GG~g~~---------~~~~----- 455 (549)
..+|+.++. +.+..||+ ..++|.. |+ .+|..+++++++|+|| ++||.+.. .+..
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iY----v~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLY----VFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEE----EEeCCCCCCCCCcceecccEEEEECC
Confidence 467775553 56777875 6788998 55 4688899999999999 99997321 1111
Q ss_pred --cc------ccCCCcceEEE-EEeCeec--CCcc--------------------------------------eeeeccc
Q 008916 456 --CN------MDQQSSFHCFG-LFLGMQE--KGSV--------------------------------------SFAVDYE 486 (549)
Q Consensus 456 --~~------m~~~r~~~~~~-~~~g~i~--~g~l--------------------------------------~~tV~~~ 486 (549)
.| |+..|..++.+ +++|+|+ .|.- ..+|
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 170 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV--- 170 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE---
Confidence 23 33444555555 6899993 2210 1246
Q ss_pred cceeecC---CcceecCCCc-e------------EEEEcCccCCC---CceEEc---c----Ccee--------------
Q 008916 487 FAARSKP---TEEFVSKYKG-N------------YTFTGGKAVGY---RNLFAI---P----WTSF-------------- 526 (549)
Q Consensus 487 ~~E~ydp---~W~~v~~l~~-~------------iyv~GG~~~~~---~~v~~y---p----W~~~-------------- 526 (549)
|+||| +|+.+++||. + |||+||..... ..+++| | |+.+
T Consensus 171 --~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~ 248 (346)
T TIGR03547 171 --LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGL 248 (346)
T ss_pred --EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccc
Confidence 99999 9999999985 3 99999976432 235555 4 8643
Q ss_pred ------eeCCeeEEEcCcc
Q 008916 527 ------MADDSLYFINGIL 539 (549)
Q Consensus 527 ------~~~~~iyviGG~~ 539 (549)
+++|+|||+||..
T Consensus 249 ~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 249 AGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred cEEeeeEECCEEEEeecCC
Confidence 4699999999964
No 22
>PLN02153 epithiospecifier protein
Probab=99.05 E-value=1.2e-09 Score=113.60 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=95.8
Q ss_pred cceeeeccC--------ceeeeecCcCCeeeecc----cccc---cceeeecCCceeeeeeeecCcc---cccc------
Q 008916 398 ERAYKYRPV--------KVVEFERPRQQCVVYLD----LKRE---ECENLFPSGRVYSQAFHLGGQG---FFLS------ 453 (549)
Q Consensus 398 ~~~~~~~~~--------~~v~~~~p~~~~w~~l~----~~r~---~~~~~~~~g~iY~~~~v~GG~g---~~~~------ 453 (549)
+.+|++++. +.+++||+.+++|..++ .+|. .|++++++++|| ++||.. ....
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy----v~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLY----IFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEE----EECCCCCCCccCcEEEEEC
Confidence 567775442 46889999999999843 2343 577889999999 999972 1111
Q ss_pred -cccc-----c-----cCCCcceEEEEEeCeec--CC-----------cceeeeccccceeecC---CcceecCCCc---
Q 008916 454 -AHCN-----M-----DQQSSFHCFGLFLGMQE--KG-----------SVSFAVDYEFAARSKP---TEEFVSKYKG--- 503 (549)
Q Consensus 454 -~~~~-----m-----~~~r~~~~~~~~~g~i~--~g-----------~l~~tV~~~~~E~ydp---~W~~v~~l~~--- 503 (549)
...| | +.+|..|++++++++|+ .| .+. +| ++||| +|+.++++..
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-~v-----~~yd~~~~~W~~l~~~~~~~~ 182 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR-TI-----EAYNIADGKWVQLPDPGENFE 182 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc-eE-----EEEECCCCeEeeCCCCCCCCC
Confidence 1223 4 67899999999999983 12 122 46 99999 8999988752
Q ss_pred e------------EEEEcCccC-----C-----CCceEEc-c----Ccee----------------eeCCeeEEEcCcc
Q 008916 504 N------------YTFTGGKAV-----G-----YRNLFAI-P----WTSF----------------MADDSLYFINGIL 539 (549)
Q Consensus 504 ~------------iyv~GG~~~-----~-----~~~v~~y-p----W~~~----------------~~~~~iyviGG~~ 539 (549)
+ ||++||.+. + .+.|++| | |+.+ +++++|||+||..
T Consensus 183 ~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 183 KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECccc
Confidence 1 899988642 1 1569999 7 9864 7889999999963
No 23
>PLN02153 epithiospecifier protein
Probab=99.02 E-value=1.7e-09 Score=112.56 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=97.6
Q ss_pred cceeeecc------CceeeeecCcCCeeee---c-----ccccccceeeecCCceeeeeeeecCccc---------cccc
Q 008916 398 ERAYKYRP------VKVVEFERPRQQCVVY---L-----DLKREECENLFPSGRVYSQAFHLGGQGF---------FLSA 454 (549)
Q Consensus 398 ~~~~~~~~------~~~v~~~~p~~~~w~~---l-----~~~r~~~~~~~~~g~iY~~~~v~GG~g~---------~~~~ 454 (549)
+.+|+.++ .+.+++|||.+++|.. | |.+|..|++++.+++|| ++||... +.+.
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY----VFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE----EECCccCCCccCCCcccceE
Confidence 56777654 3678999999999997 3 55788999999999999 9999731 0111
Q ss_pred -------ccc-----c---cCCCcceEEEEEeCeec--CC------------cceeeeccccceeecC---CcceecC--
Q 008916 455 -------HCN-----M---DQQSSFHCFGLFLGMQE--KG------------SVSFAVDYEFAARSKP---TEEFVSK-- 500 (549)
Q Consensus 455 -------~~~-----m---~~~r~~~~~~~~~g~i~--~g------------~l~~tV~~~~~E~ydp---~W~~v~~-- 500 (549)
..| | ..+|..|++++++|+|+ .| .....| ++||| +|+.+++
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v-----~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAV-----QFFDPASGKWTEVETTG 236 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCce-----EEEEcCCCcEEeccccC
Confidence 124 3 37899999999999982 11 011246 99999 9999875
Q ss_pred -CCce------------EEEEcCccC---------CC--CceEEc-c----Ccee-------------------ee-CCe
Q 008916 501 -YKGN------------YTFTGGKAV---------GY--RNLFAI-P----WTSF-------------------MA-DDS 531 (549)
Q Consensus 501 -l~~~------------iyv~GG~~~---------~~--~~v~~y-p----W~~~-------------------~~-~~~ 531 (549)
+|.+ |||+||... +. +++++| | |+.+ +. +++
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~ 316 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNG 316 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcce
Confidence 3433 999999631 11 579999 7 8754 12 458
Q ss_pred eEEEcCccccc
Q 008916 532 LYFINGILHLR 542 (549)
Q Consensus 532 iyviGG~~~~~ 542 (549)
||++||..+..
T Consensus 317 ~~~~gG~~~~~ 327 (341)
T PLN02153 317 LLMHGGKLPTN 327 (341)
T ss_pred EEEEcCcCCCC
Confidence 99999986653
No 24
>PLN02193 nitrile-specifier protein
Probab=98.99 E-value=3.1e-09 Score=115.34 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=92.1
Q ss_pred ceeeeecCcCCeeeecc----cc---cccceeeecCCceeeeeeeecCccc---ccc-------cccc-----c---cCC
Q 008916 407 KVVEFERPRQQCVVYLD----LK---REECENLFPSGRVYSQAFHLGGQGF---FLS-------AHCN-----M---DQQ 461 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~l~----~~---r~~~~~~~~~g~iY~~~~v~GG~g~---~~~-------~~~~-----m---~~~ 461 (549)
..+++||+.+++|..++ .+ |..+++++++++|| ++||... ... ...| | +.+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY----vfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY----VFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE----EECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 35889999999999743 22 45677889999999 9999731 111 1224 4 788
Q ss_pred CcceEEEEEeCeec--CC-----cceeeeccccceeecC---CcceecC---CCce------------EEEEcCccCCC-
Q 008916 462 SSFHCFGLFLGMQE--KG-----SVSFAVDYEFAARSKP---TEEFVSK---YKGN------------YTFTGGKAVGY- 515 (549)
Q Consensus 462 r~~~~~~~~~g~i~--~g-----~l~~tV~~~~~E~ydp---~W~~v~~---l~~~------------iyv~GG~~~~~- 515 (549)
|..|++++++++|+ .| .+. .+ ++||| +|+.+++ ++.+ ||++||.++..
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~~~~~-~~-----~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~ 342 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSATARLK-TL-----DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEV 342 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCcc-eE-----EEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCcc
Confidence 99999999999993 22 334 46 99999 9998875 3321 99999987544
Q ss_pred CceEEc-c----Ccee----------------eeCCeeEEEcCcc
Q 008916 516 RNLFAI-P----WTSF----------------MADDSLYFINGIL 539 (549)
Q Consensus 516 ~~v~~y-p----W~~~----------------~~~~~iyviGG~~ 539 (549)
+++++| | |+.+ +++++|||+||..
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 779999 7 9765 8899999999964
No 25
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.93 E-value=2.2e-09 Score=102.94 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=97.9
Q ss_pred cccceeeeccC-------ceeeeecCcCCeeee------cccccccceeeecCCceeeeeeeecCccc----ccc-----
Q 008916 396 FVERAYKYRPV-------KVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQGF----FLS----- 453 (549)
Q Consensus 396 ~~~~~~~~~~~-------~~v~~~~p~~~~w~~------l~~~r~~~~~~~~~g~iY~~~~v~GG~g~----~~~----- 453 (549)
+.+++|+|++. +.+.+|||.++.|.. +|..|.+|++||+++.+| ++||+.. ++.
T Consensus 87 y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~My----iFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 87 YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMY----IFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred EcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEE----EecChHHHHHhhhccceeE
Confidence 44678888775 568899999999988 788999999999999999 9999831 111
Q ss_pred ---cccc--c------cCCCcceEEEEEeCeec--------CCcceeeeccccceeecC----------CcceecCCCce
Q 008916 454 ---AHCN--M------DQQSSFHCFGLFLGMQE--------KGSVSFAVDYEFAARSKP----------TEEFVSKYKGN 504 (549)
Q Consensus 454 ---~~~~--m------~~~r~~~~~~~~~g~i~--------~g~l~~tV~~~~~E~ydp----------~W~~v~~l~~~ 504 (549)
...| | +.=|-+|...+++|+++ .|..-+.- |.|+- .|+.-++-+..
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~-----e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIH-----EQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchh-----hhhcceeEEEeccccccccCCCCCcC
Confidence 1123 3 33456788888888882 22222211 44443 68766443321
Q ss_pred ---------------EEEEcCccCCC----CceEEc-c----Ccee----------------eeCCeeEEEcCccc
Q 008916 505 ---------------YTFTGGKAVGY----RNLFAI-P----WTSF----------------MADDSLYFINGILH 540 (549)
Q Consensus 505 ---------------iyv~GG~~~~~----~~v~~y-p----W~~~----------------~~~~~iyviGG~~~ 540 (549)
+|+.||+++.- ++++|| | |..+ +.++++|++||-..
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred CCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 99999998643 889999 8 9887 88999999999643
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.91 E-value=5.4e-09 Score=110.35 Aligned_cols=127 Identities=11% Similarity=0.010 Sum_probs=86.4
Q ss_pred ceeeeecCcCCeeeeccc--c--cccceeee-cCCceeeeeeeecCcccc------------------------------
Q 008916 407 KVVEFERPRQQCVVYLDL--K--REECENLF-PSGRVYSQAFHLGGQGFF------------------------------ 451 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~l~~--~--r~~~~~~~-~~g~iY~~~~v~GG~g~~------------------------------ 451 (549)
+.+++|||..++|..++. + +..|++++ .+++|| ++||.+..
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IY----v~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAY----ITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEE----EECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 468899999999999642 3 34455555 899999 99996310
Q ss_pred -------ccccc-------c-----ccC-CCcceEEEEEeCeec--CCc----ceeeeccccceeecC---CcceecCCC
Q 008916 452 -------LSAHC-------N-----MDQ-QSSFHCFGLFLGMQE--KGS----VSFAVDYEFAARSKP---TEEFVSKYK 502 (549)
Q Consensus 452 -------~~~~~-------~-----m~~-~r~~~~~~~~~g~i~--~g~----l~~tV~~~~~E~ydp---~W~~v~~l~ 502 (549)
....| | |+. +|..+++++++++|+ .|. .. +++ -..-+||| +|+.+++||
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~-~~~-~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLR-TDA-VKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcC-Chh-heEEEecCCCcceeecCCCC
Confidence 11122 3 775 788999999999994 222 22 220 00023566 999999995
Q ss_pred ce--------------------EEEEcCccCC----------------C---CceEEc-c----Ccee------------
Q 008916 503 GN--------------------YTFTGGKAVG----------------Y---RNLFAI-P----WTSF------------ 526 (549)
Q Consensus 503 ~~--------------------iyv~GG~~~~----------------~---~~v~~y-p----W~~~------------ 526 (549)
.+ |||+||.+.. . .++++| | |+.+
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~a 339 (376)
T PRK14131 260 PAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVS 339 (376)
T ss_pred CCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEE
Confidence 31 9999996521 0 246889 7 9765
Q ss_pred -eeCCeeEEEcCcc
Q 008916 527 -MADDSLYFINGIL 539 (549)
Q Consensus 527 -~~~~~iyviGG~~ 539 (549)
+++|+|||+||..
T Consensus 340 v~~~~~iyv~GG~~ 353 (376)
T PRK14131 340 VSWNNGVLLIGGET 353 (376)
T ss_pred EEeCCEEEEEcCCC
Confidence 7899999999963
No 27
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.83 E-value=1.5e-08 Score=106.87 Aligned_cols=133 Identities=15% Similarity=0.063 Sum_probs=89.1
Q ss_pred cceeeeccC--ceeeeecCc--CCeeee---cc-cccccceeeecCCceeeeeeeecCccc---------ccccc-----
Q 008916 398 ERAYKYRPV--KVVEFERPR--QQCVVY---LD-LKREECENLFPSGRVYSQAFHLGGQGF---------FLSAH----- 455 (549)
Q Consensus 398 ~~~~~~~~~--~~v~~~~p~--~~~w~~---l~-~~r~~~~~~~~~g~iY~~~~v~GG~g~---------~~~~~----- 455 (549)
+.+|+.++. +.+..||+. .+.|.. |+ .+|..+++++++|+|| ++||... ..+..
T Consensus 39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IY----V~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLY----VFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEE----EEcCCCCCCCCCceeEcccEEEEeCC
Confidence 567775443 456778775 578987 44 3688889999999999 9999742 01111
Q ss_pred --cc------ccCCCcceEEEE-EeCeec--CCcc--------------------------------------eeeeccc
Q 008916 456 --CN------MDQQSSFHCFGL-FLGMQE--KGSV--------------------------------------SFAVDYE 486 (549)
Q Consensus 456 --~~------m~~~r~~~~~~~-~~g~i~--~g~l--------------------------------------~~tV~~~ 486 (549)
.| ++.+|..|+.++ .+|+|+ .|.- ...|
T Consensus 115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v--- 191 (376)
T PRK14131 115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV--- 191 (376)
T ss_pred CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE---
Confidence 23 234445566665 799993 2210 1246
Q ss_pred cceeecC---CcceecCCCc-e------------EEEEcCccCCC-C--ce--EEc-c----Ccee--------------
Q 008916 487 FAARSKP---TEEFVSKYKG-N------------YTFTGGKAVGY-R--NL--FAI-P----WTSF-------------- 526 (549)
Q Consensus 487 ~~E~ydp---~W~~v~~l~~-~------------iyv~GG~~~~~-~--~v--~~y-p----W~~~-------------- 526 (549)
++||| +|+.+++||. + |||+||..... + .+ ++| | |..+
T Consensus 192 --~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~ 269 (376)
T PRK14131 192 --LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEG 269 (376)
T ss_pred --EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCc
Confidence 99999 8999999996 3 99999965322 2 23 344 4 8654
Q ss_pred -------eeCCeeEEEcCcc
Q 008916 527 -------MADDSLYFINGIL 539 (549)
Q Consensus 527 -------~~~~~iyviGG~~ 539 (549)
+++++|||+||..
T Consensus 270 ~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 270 VAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred cceEeceeECCEEEEeeccC
Confidence 3689999999964
No 28
>PLN02193 nitrile-specifier protein
Probab=98.77 E-value=4.5e-08 Score=106.32 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=88.3
Q ss_pred cceeeecc------CceeeeecCcCCeeee---c---ccccccceeeecCCceeeeeeeecCccc---c-------cccc
Q 008916 398 ERAYKYRP------VKVVEFERPRQQCVVY---L---DLKREECENLFPSGRVYSQAFHLGGQGF---F-------LSAH 455 (549)
Q Consensus 398 ~~~~~~~~------~~~v~~~~p~~~~w~~---l---~~~r~~~~~~~~~g~iY~~~~v~GG~g~---~-------~~~~ 455 (549)
+.+|+.++ .+.+++|||.+++|.. | |.+|..|++++.+++|| ++||... . ....
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iY----v~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY----VFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEE----EECCCCCCCCcceEEEEECCCC
Confidence 45777544 3679999999999998 3 56799999999999999 9999731 1 1112
Q ss_pred cc--------ccCCCcceEEEEEeCeec-----CCcceeeeccccceeecC---CcceecCC---Cce------------
Q 008916 456 CN--------MDQQSSFHCFGLFLGMQE-----KGSVSFAVDYEFAARSKP---TEEFVSKY---KGN------------ 504 (549)
Q Consensus 456 ~~--------m~~~r~~~~~~~~~g~i~-----~g~l~~tV~~~~~E~ydp---~W~~v~~l---~~~------------ 504 (549)
.| |+.+|..|++++++|+++ .|.....| ++||| +|+.++++ |.+
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv-----~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~ 379 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDV-----HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKH 379 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCce-----EEEECCCCEEEEeccCCCCCCCcceeEEEEECCE
Confidence 23 567899999999999993 22212247 99999 89999866 433
Q ss_pred EEEEcCccC---------CC--CceEEc-c----Ccee
Q 008916 505 YTFTGGKAV---------GY--RNLFAI-P----WTSF 526 (549)
Q Consensus 505 iyv~GG~~~---------~~--~~v~~y-p----W~~~ 526 (549)
|||+||... +. +++++| | |+.+
T Consensus 380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred EEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 999999753 11 568999 7 8865
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.24 E-value=1.5e-06 Score=87.31 Aligned_cols=137 Identities=16% Similarity=0.092 Sum_probs=103.8
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCCCCcc--eEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHHHHHHHhhcccc
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQR--HVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVA 223 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~--~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aA~~l~l~ 223 (549)
..+|||++++ .|.+||+.||.|++.|++.+ ...+..+.....+.+.+++|+|+.+..+.. +-+.++|..|+++-+.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHhhHhhhh
Confidence 3799999999 57899999999999996532 222322367889999999999999999988 6899999999999766
Q ss_pred --c-hHHHHHHHHHcC--CCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCH
Q 008916 224 --S-CMRYCSRLLRNM--PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPL 289 (549)
Q Consensus 224 --~-L~~~C~~~L~~l--~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~ 289 (549)
. |+.+..--|++- .++.-+++.++..+-.. ....|.+.+..|++.|+..+.. .+++..+-.
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~~~ 444 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQFAETHEARHLLLLLP-DPEGDSSLR 444 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHhcC-CchhhHHHH
Confidence 2 444443333330 24455677777766555 6788999999999999999888 888765433
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.03 E-value=1.7e-05 Score=76.68 Aligned_cols=124 Identities=12% Similarity=0.023 Sum_probs=84.2
Q ss_pred eeeeecCcCCeeeeccc----------------ccccceeeecCCceeeeeeeecCcc----cccc-------cccc---
Q 008916 408 VVEFERPRQQCVVYLDL----------------KREECENLFPSGRVYSQAFHLGGQG----FFLS-------AHCN--- 457 (549)
Q Consensus 408 ~v~~~~p~~~~w~~l~~----------------~r~~~~~~~~~g~iY~~~~v~GG~g----~~~~-------~~~~--- 457 (549)
.|+.++-.+-+|..||. .|.+|.++..++++| +.||.+ -+.. .+.|
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y----vWGGRND~egaCN~Ly~fDp~t~~W~~p 120 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY----VWGGRNDDEGACNLLYEFDPETNVWKKP 120 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE----EEcCccCcccccceeeeecccccccccc
Confidence 45666667778888653 378899999999999 999983 2222 1223
Q ss_pred -----ccCCCcceEEEEEeCeec--CC------cceeeeccccceeecC---CcceecCCCce---------------EE
Q 008916 458 -----MDQQSSFHCFGLFLGMQE--KG------SVSFAVDYEFAARSKP---TEEFVSKYKGN---------------YT 506 (549)
Q Consensus 458 -----m~~~r~~~~~~~~~g~i~--~g------~l~~tV~~~~~E~ydp---~W~~v~~l~~~---------------iy 506 (549)
.+-+|-.|+.|+++..++ .| ..++.+ -..|. +|+.+..-..| +|
T Consensus 121 ~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~-----h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MY 195 (392)
T KOG4693|consen 121 EVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT-----HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMY 195 (392)
T ss_pred ceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc-----eeEeccceeeeehhccCCCchhhhhhhhhhccceEE
Confidence 888999999999988773 22 233222 34444 88888655544 89
Q ss_pred EEcCccCCC----CceEEc--------c----Ccee----------------eeCCeeEEEcCccc
Q 008916 507 FTGGKAVGY----RNLFAI--------P----WTSF----------------MADDSLYFINGILH 540 (549)
Q Consensus 507 v~GG~~~~~----~~v~~y--------p----W~~~----------------~~~~~iyviGG~~~ 540 (549)
+.||..... ..-+.| - |+.. ++|+++|++||.+.
T Consensus 196 iFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng 261 (392)
T KOG4693|consen 196 IFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNG 261 (392)
T ss_pred EeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccch
Confidence 999976432 111222 1 8775 99999999999743
No 31
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.88 E-value=1e-05 Score=78.04 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=63.4
Q ss_pred hhHhhhccCCCCCceeEEEEeEEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceec
Q 008916 125 DEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLST 204 (549)
Q Consensus 125 d~~~~~~~~~~~~~~dv~l~~~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i 204 (549)
.++...++..-..+.|+++....|+|||++||+|+|+|+.+.++.-.......-.+...+++..+|+.+|+|+|||+.-.
T Consensus 119 kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgm 198 (401)
T KOG2838|consen 119 KDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGM 198 (401)
T ss_pred HHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccch
Confidence 46667777778889999999999999999999999999998876433222222223333889999999999999998765
Q ss_pred CC
Q 008916 205 TA 206 (549)
Q Consensus 205 ~~ 206 (549)
..
T Consensus 199 Ed 200 (401)
T KOG2838|consen 199 ED 200 (401)
T ss_pred hh
Confidence 43
No 32
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.85 E-value=2.9e-05 Score=85.01 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=66.0
Q ss_pred CceeEEEEe--EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEe----------cCCCcHHHHHHHhHhHhcCceec
Q 008916 137 MDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALR----------INASEEAALMELLNFMYSNTLST 204 (549)
Q Consensus 137 ~~~dv~l~~--~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~----------~~~~~~~~f~~lL~fiYtg~l~i 204 (549)
..-||++.+ +.|+|||.||+++|++||++|....+.+..+.|.+. ..++.+..|+.+|+||||+.+--
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~ 636 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLS 636 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccC
Confidence 356777776 589999999999999999999764433333333332 34899999999999999984321
Q ss_pred C--Cc-----------chH-------HHHHHHHhhccccchHHHHHH
Q 008916 205 T--AA-----------PAL-------LDVLMAADKFEVASCMRYCSR 231 (549)
Q Consensus 205 ~--~~-----------~~v-------~~lL~aA~~l~l~~L~~~C~~ 231 (549)
+ ++ +|. ..++..+.++++.+|...-..
T Consensus 637 P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 637 PWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred CccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 1 10 233 337777788888777654443
No 33
>PF13964 Kelch_6: Kelch motif
Probab=97.67 E-value=5.3e-05 Score=55.44 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=36.8
Q ss_pred ccccceeeecCCceeeeeeeecCccccccccccccCCCcceEEEEEeCeecCCcceeeeccccceeecC---CcceecCC
Q 008916 425 KREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKY 501 (549)
Q Consensus 425 ~r~~~~~~~~~g~iY~~~~v~GG~g~~~~~~~~m~~~r~~~~~~~~~g~i~~g~l~~tV~~~~~E~ydp---~W~~v~~l 501 (549)
+|..|++++.+|+|| ++||.... ...++ .| |+||| +|+.+++|
T Consensus 1 pR~~~s~v~~~~~iy----v~GG~~~~------------------------~~~~~-~v-----~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIY----VFGGYDNS------------------------GKYSN-DV-----ERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEE----EECCCCCC------------------------CCccc-cE-----EEEcCCCCcEEECCCC
Confidence 478899999999999 99997421 11233 58 99999 99999999
Q ss_pred Cce
Q 008916 502 KGN 504 (549)
Q Consensus 502 ~~~ 504 (549)
|.|
T Consensus 47 p~p 49 (50)
T PF13964_consen 47 PTP 49 (50)
T ss_pred CCC
Confidence 975
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.57 E-value=3.4e-05 Score=74.55 Aligned_cols=96 Identities=21% Similarity=0.333 Sum_probs=67.3
Q ss_pred EEEchHHHhcccCHHHHHhhcCCCCCCC---------cceEEEecCCCcHHHH-HHHhHhHhcCceecCCc---------
Q 008916 147 TLHISSPILAAKSPFFYKLFSNGMKESE---------QRHVALRINASEEAAL-MELLNFMYSNTLSTTAA--------- 207 (549)
Q Consensus 147 ~f~aHr~iLaa~S~yF~~mf~~~~~Es~---------~~~I~L~~~~~~~~~f-~~lL~fiYtg~l~i~~~--------- 207 (549)
++.||++|.|+||++||.++....+|.. ...|.+.+ -+-|.+| ..+|++|||+.+..+..
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 6999999999999999999865444432 23566653 3334444 45799999998764311
Q ss_pred ------------------chHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHH
Q 008916 208 ------------------PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESAL 244 (549)
Q Consensus 208 ------------------~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~ 244 (549)
..+++|+.+|.+|.++-|.+.|+..+.. ....++..
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn 394 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSN 394 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccc
Confidence 2246788888888888888888888877 55544433
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.56 E-value=5.2e-05 Score=54.52 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=35.0
Q ss_pred ccccceeeecCCceeeeeeeecCccccccccccccCCCcceEEEEEeCeecCCcceeeeccccceeecC---CcceecCC
Q 008916 425 KREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKY 501 (549)
Q Consensus 425 ~r~~~~~~~~~g~iY~~~~v~GG~g~~~~~~~~m~~~r~~~~~~~~~g~i~~g~l~~tV~~~~~E~ydp---~W~~v~~l 501 (549)
+|..|++++.+++|| ++||.... ...++ +| |+||| +|+.+++|
T Consensus 1 pR~~~~~~~~~~~iy----v~GG~~~~------------------------~~~~~-~v-----~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIY----VIGGYDGN------------------------NQPTN-SV-----EVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEE----EEEEBEST------------------------SSBEE-EE-----EEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEE----EEeeeccc------------------------Cceee-eE-----EEEeCCCCEEEEcCCC
Confidence 478899999999999 99997521 11334 58 99999 99999999
Q ss_pred C
Q 008916 502 K 502 (549)
Q Consensus 502 ~ 502 (549)
|
T Consensus 47 p 47 (47)
T PF01344_consen 47 P 47 (47)
T ss_dssp S
T ss_pred C
Confidence 7
No 36
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00046 Score=66.66 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=76.9
Q ss_pred EEEEeEEEEchHHHhcccCHHHHHhhcCCCC--CCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCc-chHHHHHHHH
Q 008916 141 TVVRVKTLHISSPILAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFMYSNTLSTTAA-PALLDVLMAA 217 (549)
Q Consensus 141 v~l~~~~f~aHr~iLaa~S~yF~~mf~~~~~--Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~-~~v~~lL~aA 217 (549)
+-+.+..|..++.-|.....||++||.+++. -...+.|-| |=+|.-|..+|+||-.|.+.+... ..+.+|+.=|
T Consensus 9 LnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 9 LNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 3344468999999999999999999999874 223456777 679999999999999888776542 4788999999
Q ss_pred hhccccchHHHHHHHHHc
Q 008916 218 DKFEVASCMRYCSRLLRN 235 (549)
Q Consensus 218 ~~l~l~~L~~~C~~~L~~ 235 (549)
.+|.++.|.+.|...+..
T Consensus 86 ~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHhhHHHHHHHHHHHhhh
Confidence 999999999999998876
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=6.6e-05 Score=76.56 Aligned_cols=127 Identities=16% Similarity=0.132 Sum_probs=103.6
Q ss_pred eEEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHH---HHHHHHhhcc
Q 008916 145 VKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALL---DVLMAADKFE 221 (549)
Q Consensus 145 ~~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~---~lL~aA~~l~ 221 (549)
.+.+.+|+++++++|+.|++|+.....+.....+++. +.++..++.+..|+|+..-.... +... .++.+|.+++
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhccccc
Confidence 4579999999999999999999987766666667776 88999999999999996544333 2343 8888999999
Q ss_pred ccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHh--hhhhhhc
Q 008916 222 VASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLAS--RYKDMTK 279 (549)
Q Consensus 222 l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~--nf~~v~~ 279 (549)
.+.|+..|...+.+ .+...+...++..+..+ ....+..++..++.. ++..+..
T Consensus 186 ~~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 186 NRHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGFKLDWLEK 240 (297)
T ss_pred cHHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccchHhHHHH
Confidence 99999999999999 68888888888888777 677788888888876 5555554
No 38
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.33 E-value=0.00079 Score=69.09 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=86.1
Q ss_pred ceeeeecCcCCeeeec-----ccccccce-eeecCCceeeeeeeecCcc-------cc---------cccccc-------
Q 008916 407 KVVEFERPRQQCVVYL-----DLKREECE-NLFPSGRVYSQAFHLGGQG-------FF---------LSAHCN------- 457 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~l-----~~~r~~~~-~~~~~g~iY~~~~v~GG~g-------~~---------~~~~~~------- 457 (549)
+.+..|+.+.+.|..+ |.+|+.|. +|++.|.+| +.||.- |+ ...+-|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~----~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW----LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE----EeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 4577899999999983 45688886 567779999 999951 11 001112
Q ss_pred ccCCCcceEEEEEeCee---c-----CCcc--eeeeccccceeecC---CcceecCCCc--e---------------EEE
Q 008916 458 MDQQSSFHCFGLFLGMQ---E-----KGSV--SFAVDYEFAARSKP---TEEFVSKYKG--N---------------YTF 507 (549)
Q Consensus 458 m~~~r~~~~~~~~~g~i---~-----~g~l--~~tV~~~~~E~ydp---~W~~v~~l~~--~---------------iyv 507 (549)
-+.+|+.|-+++..-++ + ++.+ ..-| -+||. +|..+.| +. | |||
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDv-----y~FdLdtykW~Klep-sga~PtpRSGcq~~vtpqg~i~v 247 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDV-----YAFDLDTYKWSKLEP-SGAGPTPRSGCQFSVTPQGGIVV 247 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeee-----EEEeccceeeeeccC-CCCCCCCCCcceEEecCCCcEEE
Confidence 78899999999887776 1 1111 1124 56666 9999988 44 2 999
Q ss_pred EcCccCCC-----------CceEEc-c---------Ccee-----------------eeCCeeEEEcCcccc
Q 008916 508 TGGKAVGY-----------RNLFAI-P---------WTSF-----------------MADDSLYFINGILHL 541 (549)
Q Consensus 508 ~GG~~~~~-----------~~v~~y-p---------W~~~-----------------~~~~~iyviGG~~~~ 541 (549)
.||++-.. .+++.. | |+.+ +-+++-|++||+.-+
T Consensus 248 yGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ 319 (521)
T KOG1230|consen 248 YGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDL 319 (521)
T ss_pred EcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecc
Confidence 99986211 556777 5 7776 567799999998543
No 39
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.15 E-value=0.0026 Score=69.34 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=89.5
Q ss_pred eeeecCcCCeeee------cccccccceeeecCCceeeeeeeecCccc-----------ccccccc--------ccCCCc
Q 008916 409 VEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQGF-----------FLSAHCN--------MDQQSS 463 (549)
Q Consensus 409 v~~~~p~~~~w~~------l~~~r~~~~~~~~~g~iY~~~~v~GG~g~-----------~~~~~~~--------m~~~r~ 463 (549)
++.+|...+.|.. .|.+|.++..+.++++|| ++||... ....++| ++.+|+
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~----lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~ 165 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLY----LFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA 165 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCeEE----EEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc
Confidence 7788888888887 467799999999999999 9999852 1123344 799999
Q ss_pred ceEEEEEeCeec-------CC-cceeeeccccceeecC---CcceecCC---Cce------------EEEEcCcc-CCC-
Q 008916 464 FHCFGLFLGMQE-------KG-SVSFAVDYEFAARSKP---TEEFVSKY---KGN------------YTFTGGKA-VGY- 515 (549)
Q Consensus 464 ~~~~~~~~g~i~-------~g-~l~~tV~~~~~E~ydp---~W~~v~~l---~~~------------iyv~GG~~-~~~- 515 (549)
+|++++.+.++. .+ .+. .+ ..||+ +|..+.-. |.| ++++||.. ++.
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~~~~~n-dl-----~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGTGDSLN-DL-----HIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred cceEEEECCEEEEECCccCccccee-ee-----eeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCce
Confidence 999999998881 22 344 36 89999 89887433 222 88888877 333
Q ss_pred -CceEEc-c----Ccee----------------eeCCeeEEEcCc
Q 008916 516 -RNLFAI-P----WTSF----------------MADDSLYFINGI 538 (549)
Q Consensus 516 -~~v~~y-p----W~~~----------------~~~~~iyviGG~ 538 (549)
+++.++ - |... +.++.++++||.
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred ecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 777777 2 7754 788999999995
No 40
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.14 E-value=0.0016 Score=70.95 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=82.0
Q ss_pred cccccccceeeecCCceeeeeeeecCccc--cccc----------ccc--------ccCCCcceEEEEEeCeec--CCcc
Q 008916 422 LDLKREECENLFPSGRVYSQAFHLGGQGF--FLSA----------HCN--------MDQQSSFHCFGLFLGMQE--KGSV 479 (549)
Q Consensus 422 l~~~r~~~~~~~~~g~iY~~~~v~GG~g~--~~~~----------~~~--------m~~~r~~~~~~~~~g~i~--~g~l 479 (549)
.|.+|..|+++..++++| |.||.+. .... .-| -+.+|..|++++++.+|+ .|..
T Consensus 57 ~p~~R~~hs~~~~~~~~~----vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLY----VFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred CcchhhccceeEECCEEE----EECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 456799999999999999 9999842 1111 112 667899999999998883 2222
Q ss_pred e-----eeeccccceeecC---CcceecCCCc-e--------------EEEEcCccCCC---CceEEc-c----Ccee--
Q 008916 480 S-----FAVDYEFAARSKP---TEEFVSKYKG-N--------------YTFTGGKAVGY---RNLFAI-P----WTSF-- 526 (549)
Q Consensus 480 ~-----~tV~~~~~E~ydp---~W~~v~~l~~-~--------------iyv~GG~~~~~---~~v~~y-p----W~~~-- 526 (549)
. ..+ -+||+ +|++..+... | +||.||..... +++++| + |..+
T Consensus 133 ~~~~~~~~l-----~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 133 KKYRNLNEL-----HSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred CCCCChhhe-----EeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceeccc
Confidence 1 125 78888 9999988776 3 99999977443 789999 5 9987
Q ss_pred --------------eeCCeeEEEcCcc
Q 008916 527 --------------MADDSLYFINGIL 539 (549)
Q Consensus 527 --------------~~~~~iyviGG~~ 539 (549)
++++++++|||-.
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGGD 234 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEeccc
Confidence 8899999999965
No 41
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.11 E-value=0.00052 Score=69.04 Aligned_cols=88 Identities=11% Similarity=0.282 Sum_probs=72.6
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCCCC-cceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHHHHHHHhhccccc
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKESE-QRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVAS 224 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~Es~-~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aA~~l~l~~ 224 (549)
+.|.|.+-+|...=.||+..+.....+++ ...|.|. ..-+-.+|+=+++|+......++. .||..||.-|++|+|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 47999999999999999999965332322 2456665 357899999999999998888888 69999999999999999
Q ss_pred hHHHHHHHHHc
Q 008916 225 CMRYCSRLLRN 235 (549)
Q Consensus 225 L~~~C~~~L~~ 235 (549)
|.+.|..|+.+
T Consensus 92 Lve~cl~y~~~ 102 (317)
T PF11822_consen 92 LVEECLQYCHD 102 (317)
T ss_pred HHHHHHHHHHH
Confidence 98888888766
No 42
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.97 E-value=0.00057 Score=57.12 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=62.1
Q ss_pred EEeEEEEchHHHhc-ccCHHHHHhhcCC---CCCCCcceEEEecCCCcHHHHHHHhHhHhc-CceecCCcchHHHHHHHH
Q 008916 143 VRVKTLHISSPILA-AKSPFFYKLFSNG---MKESEQRHVALRINASEEAALMELLNFMYS-NTLSTTAAPALLDVLMAA 217 (549)
Q Consensus 143 l~~~~f~aHr~iLa-a~S~yF~~mf~~~---~~Es~~~~I~L~~~~~~~~~f~~lL~fiYt-g~l~i~~~~~v~~lL~aA 217 (549)
|.++.|.+-+..|. ....+|.+|+.+. ........+-| +=++..|+.||+|+.+ +.+..+....+..++.-|
T Consensus 5 VGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea 81 (94)
T PF02214_consen 5 VGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEA 81 (94)
T ss_dssp ETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHH
T ss_pred ECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHH
Confidence 34468999999998 5567999999864 33344567777 6799999999999999 777765335889999999
Q ss_pred hhccccch-HHHH
Q 008916 218 DKFEVASC-MRYC 229 (549)
Q Consensus 218 ~~l~l~~L-~~~C 229 (549)
.+|+++.| ++.|
T Consensus 82 ~fy~l~~l~i~~c 94 (94)
T PF02214_consen 82 EFYGLDELFIEDC 94 (94)
T ss_dssp HHHT-HHHHBHHC
T ss_pred HHcCCCccccCCC
Confidence 99999998 7766
No 43
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.55 E-value=0.0046 Score=50.64 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=56.7
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCC--CCcceEEEecCCCcHHHHHHHhHhH-----hcCc------eecCCcchHHH
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKE--SEQRHVALRINASEEAALMELLNFM-----YSNT------LSTTAAPALLD 212 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~E--s~~~~I~L~~~~~~~~~f~~lL~fi-----Ytg~------l~i~~~~~v~~ 212 (549)
.+|-..|-+ |.-|+-.|+||++...+ +..++|.++ ++....++.+.+|+ |++. .+|.. +.+++
T Consensus 27 hefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emale 102 (112)
T KOG3473|consen 27 HEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALE 102 (112)
T ss_pred cEEEEeehh-hhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHH
Confidence 356555543 46699999999986554 456789999 99999999999998 6665 23455 79999
Q ss_pred HHHHHhhccc
Q 008916 213 VLMAADKFEV 222 (549)
Q Consensus 213 lL~aA~~l~l 222 (549)
||.||++|.+
T Consensus 103 LL~aAn~Lec 112 (112)
T KOG3473|consen 103 LLMAANYLEC 112 (112)
T ss_pred HHHHhhhhcC
Confidence 9999999863
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.44 E-value=0.0035 Score=45.52 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=34.1
Q ss_pred ccccceeeecCCceeeeeeeecCccccccccccccCCCcceEEEEEeCeecCCcceeeeccccceeecC---CcceecCC
Q 008916 425 KREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKY 501 (549)
Q Consensus 425 ~r~~~~~~~~~g~iY~~~~v~GG~g~~~~~~~~m~~~r~~~~~~~~~g~i~~g~l~~tV~~~~~E~ydp---~W~~v~~l 501 (549)
+|..|++++++++|| ++||.+.. ..+.....| +.||+ +|+.+++|
T Consensus 1 ~r~~hs~~~~~~kiy----v~GG~~~~-----------------------~~~~~~~~v-----~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIY----VFGGYGTD-----------------------NGGSSSNDV-----WVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEE----EECCcccC-----------------------CCCccccee-----EEEECCCCEEeecCCC
Confidence 477899999999999 99997100 011222347 99999 99999988
Q ss_pred C
Q 008916 502 K 502 (549)
Q Consensus 502 ~ 502 (549)
+
T Consensus 49 g 49 (49)
T PF07646_consen 49 G 49 (49)
T ss_pred C
Confidence 5
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.34 E-value=0.019 Score=60.65 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=49.7
Q ss_pred CceeeeecCcCCeeee------cccccccceeeecCCceeeeeeeecCc---ccc------cccccc-------------
Q 008916 406 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ---GFF------LSAHCN------------- 457 (549)
Q Consensus 406 ~~~v~~~~p~~~~w~~------l~~~r~~~~~~~~~g~iY~~~~v~GG~---g~~------~~~~~~------------- 457 (549)
+..++.|+..+++|.. +|..-.-|+.+..+++|| ++||+ |.+ +.+..|
T Consensus 56 iDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril----vFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG 131 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL----VFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNG 131 (830)
T ss_pred hhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE----EEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCC
Confidence 4678899999999986 566666778888899999 99997 432 223333
Q ss_pred -ccCCCcceEEEEEeCee
Q 008916 458 -MDQQSSFHCFGLFLGMQ 474 (549)
Q Consensus 458 -m~~~r~~~~~~~~~g~i 474 (549)
.+.+|..|+|.+.+.+-
T Consensus 132 ~pPCPRlGHSFsl~gnKc 149 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVGNKC 149 (830)
T ss_pred CCCCCccCceeEEeccEe
Confidence 78899999998877665
No 46
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.40 E-value=0.038 Score=47.07 Aligned_cols=73 Identities=8% Similarity=0.221 Sum_probs=53.5
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCCC-CcceEEEecCCCcHHHHHHHhHhHhcCcee-------------------cC
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKES-EQRHVALRINASEEAALMELLNFMYSNTLS-------------------TT 205 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~Es-~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~-------------------i~ 205 (549)
.+|.+.+.+. ..|..++.|+.+.-.+. ....|.|+ +++..+|+.+++|++.-.-. ++
T Consensus 12 ~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d 88 (104)
T smart00512 12 EVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKID 88 (104)
T ss_pred CEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCC
Confidence 4899999987 58999999997633222 22467776 89999999999999642211 22
Q ss_pred CcchHHHHHHHHhhccc
Q 008916 206 AAPALLDVLMAADKFEV 222 (549)
Q Consensus 206 ~~~~v~~lL~aA~~l~l 222 (549)
. +.+.+|+.||++|++
T Consensus 89 ~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 89 Q-ETLFELILAANYLDI 104 (104)
T ss_pred H-HHHHHHHHHHHhhCC
Confidence 2 478889999988875
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.93 E-value=0.019 Score=41.47 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=24.3
Q ss_pred ccccceeeec-CCceeeeeeeecCccccccccccccCCCcceEEEEEeCeecCCcceeeeccccceeecC---CcceecC
Q 008916 425 KREECENLFP-SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSK 500 (549)
Q Consensus 425 ~r~~~~~~~~-~g~iY~~~~v~GG~g~~~~~~~~m~~~r~~~~~~~~~g~i~~g~l~~tV~~~~~E~ydp---~W~~v~~ 500 (549)
+|..|+++.+ ++.|| ++||.+.. ...++ .+ +.||+ +|+.+++
T Consensus 1 pR~~h~~~~~~~~~i~----v~GG~~~~------------------------~~~~~-d~-----~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIY----VFGGRDSS------------------------GSPLN-DL-----WIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEE----EE--EEE-------------------------TEE----E-----EEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEE----EECCCCCC------------------------CcccC-CE-----EEEECCCCEEEECCC
Confidence 4777887776 68999 99997421 01334 36 89999 9999999
Q ss_pred CCc
Q 008916 501 YKG 503 (549)
Q Consensus 501 l~~ 503 (549)
||.
T Consensus 47 ~P~ 49 (49)
T PF13418_consen 47 MPS 49 (49)
T ss_dssp S--
T ss_pred CCC
Confidence 884
No 48
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.12 E-value=0.16 Score=48.46 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=66.8
Q ss_pred ceeEEEEeEEEEchHHHhcccC--HHHHHhhcCCC---CCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHH
Q 008916 138 DCSTVVRVKTLHISSPILAAKS--PFFYKLFSNGM---KESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLD 212 (549)
Q Consensus 138 ~~dv~l~~~~f~aHr~iLaa~S--~yF~~mf~~~~---~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~ 212 (549)
.+.+-+.++.|.--.--|.-+- ....+||.+.- .+.++.-+-| |-+|.-|+.+|+|+-.|++.....-++..
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHH
Confidence 3445555666665555554443 35678887732 2334455555 67999999999999999998665468999
Q ss_pred HHHHHhhccccchHHHHHH
Q 008916 213 VLMAADKFEVASCMRYCSR 231 (549)
Q Consensus 213 lL~aA~~l~l~~L~~~C~~ 231 (549)
+|+.|++||+-+|++..++
T Consensus 87 vLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHhhHHhhHhHHhHHhh
Confidence 9999999999999988777
No 49
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=0.16 Score=51.80 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=31.1
Q ss_pred ceeeeecCcCCeeeeccc----ccccceeeecCC-ceeeeeeeecCc
Q 008916 407 KVVEFERPRQQCVVYLDL----KREECENLFPSG-RVYSQAFHLGGQ 448 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~l~~----~r~~~~~~~~~g-~iY~~~~v~GG~ 448 (549)
+.+..|||..++|..|+. ...++.++.+++ .|| +.||.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~----f~GGv 155 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY----FFGGV 155 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEE----EEccc
Confidence 678899999999999652 245677888888 999 99997
No 50
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.22 Score=45.78 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=68.2
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCcee----------------------
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLS---------------------- 203 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~---------------------- 203 (549)
+.|.+-..+. ..|...++++...--......|.|+ .+....|..+|+|++.-+-.
T Consensus 15 ~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 15 EIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred ceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 4788877776 5688888887542111111457776 89999999999999874321
Q ss_pred ---cCCcchHHHHHHHHhhccccchHHHHHHHHHcC--CCChhhHHHH
Q 008916 204 ---TTAAPALLDVLMAADKFEVASCMRYCSRLLRNM--PMTPESALLY 246 (549)
Q Consensus 204 ---i~~~~~v~~lL~aA~~l~l~~L~~~C~~~L~~l--~l~~~n~~~i 246 (549)
++. .++.+|+.||++|+++.|.+.|++.+..| .-+++....+
T Consensus 92 Flk~d~-~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~ 138 (162)
T KOG1724|consen 92 FLKVDQ-GTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREI 138 (162)
T ss_pred HHhcCH-HHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 122 47899999999999999999999987663 2244444443
No 51
>smart00612 Kelch Kelch domain.
Probab=93.43 E-value=0.068 Score=37.53 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=25.5
Q ss_pred CceeeeecCcCCeeee---cccccccceeeecCC
Q 008916 406 VKVVEFERPRQQCVVY---LDLKREECENLFPSG 436 (549)
Q Consensus 406 ~~~v~~~~p~~~~w~~---l~~~r~~~~~~~~~g 436 (549)
...+++|||.++.|.. |+.+|..+++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4678999999999988 677788888877654
No 52
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=92.97 E-value=0.32 Score=50.75 Aligned_cols=91 Identities=16% Similarity=0.276 Sum_probs=68.0
Q ss_pred eeEEEEeEEEEchHHHhcccC--HHHHHhhcCCCCCCCcce--EEEecCCCcHHHHHHHhHhHhcCceecCCcchHHHHH
Q 008916 139 CSTVVRVKTLHISSPILAAKS--PFFYKLFSNGMKESEQRH--VALRINASEEAALMELLNFMYSNTLSTTAAPALLDVL 214 (549)
Q Consensus 139 ~dv~l~~~~f~aHr~iLaa~S--~yF~~mf~~~~~Es~~~~--I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL 214 (549)
+.+-+.++.|.-.+.-|+... .+|.++|++.|.-.+... |-| |=+|+.|..+|+|+-||++++... ....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g~-~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASGV-FPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCccC-chhhhh
Confidence 344444578988888886554 699999998876554433 666 679999999999999999999763 444444
Q ss_pred H-HHhhccccchHH---HHHHHH
Q 008916 215 M-AADKFEVASCMR---YCSRLL 233 (549)
Q Consensus 215 ~-aA~~l~l~~L~~---~C~~~L 233 (549)
. -|.+|++..|.+ +|+..+
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCcccc
Confidence 4 999999999886 555543
No 53
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=92.49 E-value=0.29 Score=50.91 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=50.9
Q ss_pred ceeeeecCcCCeeeec-----ccccccceeeecCCceeeeeeeecCcc-------ccccccc-------c--------cc
Q 008916 407 KVVEFERPRQQCVVYL-----DLKREECENLFPSGRVYSQAFHLGGQG-------FFLSAHC-------N--------MD 459 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~l-----~~~r~~~~~~~~~g~iY~~~~v~GG~g-------~~~~~~~-------~--------m~ 459 (549)
+.++.++..+++|..| |++|++|-+++....|+ ++||+- ++....| | -+
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~li----lFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P 229 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLI----LFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP 229 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCccceeEEeeeeEE----EEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC
Confidence 6788889999999995 57899999999999998 999972 2222222 2 58
Q ss_pred CCCcceEEEEE-eCee
Q 008916 460 QQSSFHCFGLF-LGMQ 474 (549)
Q Consensus 460 ~~r~~~~~~~~-~g~i 474 (549)
.+|+.||+.+. +|.|
T Consensus 230 tpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 230 TPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCCcceEEecCCCcE
Confidence 89999999988 7776
No 54
>PF13854 Kelch_5: Kelch motif
Probab=90.64 E-value=0.2 Score=35.00 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.6
Q ss_pred cccccccceeeecCCceeeeeeeecCcc
Q 008916 422 LDLKREECENLFPSGRVYSQAFHLGGQG 449 (549)
Q Consensus 422 l~~~r~~~~~~~~~g~iY~~~~v~GG~g 449 (549)
+|.+|..|++++.+++|| +.||..
T Consensus 1 ~P~~R~~hs~~~~~~~iy----i~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIY----IFGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEE----EEcCcc
Confidence 478899999999999999 999975
No 55
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=90.52 E-value=1.3 Score=33.84 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=38.4
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhc
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYS 199 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYt 199 (549)
+.|.+.+.++ ..|..++.|+.+.-.+.. .|.|+ +++...|+.+++|++.
T Consensus 11 ~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 11 QEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred CEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 5899999888 479999999976332222 67777 9999999999999963
No 56
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.28 E-value=0.39 Score=51.05 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=54.2
Q ss_pred ceeeeccC-----ceeeeecCcCCeeee------cccccccceeeecCCceeeeeeeecCc----cc-------------
Q 008916 399 RAYKYRPV-----KVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ----GF------------- 450 (549)
Q Consensus 399 ~~~~~~~~-----~~v~~~~p~~~~w~~------l~~~r~~~~~~~~~g~iY~~~~v~GG~----g~------------- 450 (549)
++|+|++. ..++..|..+-.|.. -|.+|+-|+..+++|++| |.||. +.
T Consensus 217 kmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMy----vfGGWVPl~~~~~~~~~hekEWkC 292 (830)
T KOG4152|consen 217 KMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMY----VFGGWVPLVMDDVKVATHEKEWKC 292 (830)
T ss_pred eEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeE----Eecceeeeeccccccccccceeee
Confidence 45666653 456667777888877 467899999999999999 99997 11
Q ss_pred ccccccc-------------------ccCCCcceEEEEEeCeec
Q 008916 451 FLSAHCN-------------------MDQQSSFHCFGLFLGMQE 475 (549)
Q Consensus 451 ~~~~~~~-------------------m~~~r~~~~~~~~~g~i~ 475 (549)
..+-.|| .+.+|+.||.++++-+++
T Consensus 293 Tssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlY 336 (830)
T KOG4152|consen 293 TSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLY 336 (830)
T ss_pred ccceeeeeecchheeeeeeccccccccccccccceeEEeccEEE
Confidence 0111232 778899999999999993
No 57
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.26 E-value=16 Score=36.85 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=63.4
Q ss_pred hhhHhhhccCCCCCceeEEEEe--EEEEchHHHhcccC-HHHHHhhcCCCCC---CCcceEEEecCCCcHHHHHHHhHhH
Q 008916 124 GDEAANGNESSWSMDCSTVVRV--KTLHISSPILAAKS-PFFYKLFSNGMKE---SEQRHVALRINASEEAALMELLNFM 197 (549)
Q Consensus 124 ~d~~~~~~~~~~~~~~dv~l~~--~~f~aHr~iLaa~S-~yF~~mf~~~~~E---s~~~~I~L~~~~~~~~~f~~lL~fi 197 (549)
.+....-.....+.--.+++.+ -.|-+.+.+|.+.- .-.-.||.+++.- ....+.++. ++++..+|++||+|-
T Consensus 81 ~~~~~s~~G~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYY 159 (438)
T KOG3840|consen 81 HEMLMSQLGCSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYY 159 (438)
T ss_pred hhhhhhhcCCCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHH
Confidence 3433333333444433344433 36777777775432 1234566654322 123455555 489999999999999
Q ss_pred hcCceecCCcchHHHHHHHHhhccccc
Q 008916 198 YSNTLSTTAAPALLDVLMAADKFEVAS 224 (549)
Q Consensus 198 Ytg~l~i~~~~~v~~lL~aA~~l~l~~ 224 (549)
-+|.+.....-.|.+|-+|+|+|.++.
T Consensus 160 ksG~iRCP~~vSvpELrEACDYLlipF 186 (438)
T KOG3840|consen 160 QSGTMRCPSSVSVSELREACDYLLVPF 186 (438)
T ss_pred hcCceeCCCCCchHHHHhhcceEEeec
Confidence 999998776557889999999988764
No 58
>smart00612 Kelch Kelch domain.
Probab=87.11 E-value=1 Score=31.27 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=15.2
Q ss_pred eeecC---CcceecCCCce
Q 008916 489 ARSKP---TEEFVSKYKGN 504 (549)
Q Consensus 489 E~ydp---~W~~v~~l~~~ 504 (549)
|+||| +|+.+++|+.+
T Consensus 18 ~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred EEECCCCCeEccCCCCCCc
Confidence 99999 99999999987
No 59
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.45 E-value=0.9 Score=46.58 Aligned_cols=47 Identities=19% Similarity=0.514 Sum_probs=35.9
Q ss_pred CcceecCCCce-------------EEEEcCcc--CCC-----CceEEc-c----Ccee--------------eeCC-eeE
Q 008916 494 TEEFVSKYKGN-------------YTFTGGKA--VGY-----RNLFAI-P----WTSF--------------MADD-SLY 533 (549)
Q Consensus 494 ~W~~v~~l~~~-------------iyv~GG~~--~~~-----~~v~~y-p----W~~~--------------~~~~-~iy 533 (549)
.|+.++..|.. +||.||.- ... ++++.| | |+.+ ++++ +||
T Consensus 71 ~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~ 150 (381)
T COG3055 71 GWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY 150 (381)
T ss_pred CceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEE
Confidence 88888888765 88888743 221 668888 7 9987 7777 999
Q ss_pred EEcCccc
Q 008916 534 FINGILH 540 (549)
Q Consensus 534 viGG~~~ 540 (549)
++||+.+
T Consensus 151 f~GGvn~ 157 (381)
T COG3055 151 FFGGVNQ 157 (381)
T ss_pred EEccccH
Confidence 9999854
No 60
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.29 E-value=1.8 Score=37.75 Aligned_cols=85 Identities=16% Similarity=0.307 Sum_probs=59.0
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCC-------------------
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA------------------- 206 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~------------------- 206 (549)
+.|.+.+.+ |.+|-..+.|+.. +..-.+.++.+.+...+|+.+++|+-..+-..+.
T Consensus 12 e~F~vd~~i-AerSiLikN~l~d----~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~ 86 (158)
T COG5201 12 EIFRVDENI-AERSILIKNMLCD----STACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRF 86 (158)
T ss_pred cEEEehHHH-HHHHHHHHHHhcc----ccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHH
Confidence 567766654 4677777887754 2222333444489999999999999543221111
Q ss_pred -----cchHHHHHHHHhhccccchHHHHHHHHHc
Q 008916 207 -----APALLDVLMAADKFEVASCMRYCSRLLRN 235 (549)
Q Consensus 207 -----~~~v~~lL~aA~~l~l~~L~~~C~~~L~~ 235 (549)
.+.+.++..+|++|.++.|.+.||+.+..
T Consensus 87 Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 87 FMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred HHHhhHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 04578899999999999999999988766
No 61
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=86.21 E-value=0.52 Score=48.18 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=103.0
Q ss_pred EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCC-cchHHHHHHHHhhccccc
Q 008916 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLMAADKFEVAS 224 (549)
Q Consensus 146 ~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~-~~~v~~lL~aA~~l~l~~ 224 (549)
..+.+|+.+|+..|+.|..+....-..+..+.+.+. +.+...+..+..++|.. ++.-+ ......++.+...+.++.
T Consensus 36 ~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~ 112 (319)
T KOG1778|consen 36 DLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQ 112 (319)
T ss_pred hhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccC
Confidence 479999999999999998887665222334455665 77889999999999988 33222 135677888888999999
Q ss_pred hHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhc
Q 008916 225 CMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVM 285 (549)
Q Consensus 225 L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl 285 (549)
++.-|...+..--++..+++..+..+..+ ....|..++...+...|..... ++.+.
T Consensus 113 ~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~~ 168 (319)
T KOG1778|consen 113 PKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKWF 168 (319)
T ss_pred ccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCce
Confidence 99999888765137888999999999888 7888999999999988888877 65554
No 62
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=86.18 E-value=0.4 Score=33.92 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.0
Q ss_pred ceEEEEcCccC-CC--CceEEc-c----Ccee
Q 008916 503 GNYTFTGGKAV-GY--RNLFAI-P----WTSF 526 (549)
Q Consensus 503 ~~iyv~GG~~~-~~--~~v~~y-p----W~~~ 526 (549)
..||++||.+. .. +++++| | |..+
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 34899999987 33 889999 7 9875
No 63
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.79 E-value=0.44 Score=48.88 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=61.7
Q ss_pred CCChhhHhhhccC-CCCCceeEEEEe---EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHh
Q 008916 121 SPSGDEAANGNES-SWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNF 196 (549)
Q Consensus 121 ~~~~d~~~~~~~~-~~~~~~dv~l~~---~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~f 196 (549)
+|+...+..++.. ..+.-.|+++.+ +.|.|||..|+++|.+|..-+..-+. ...+|+-. .+-+.+|..+++|
T Consensus 131 qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~--~v~~~~f~~flk~ 206 (516)
T KOG0511|consen 131 QPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAH--RVILSAFSPFLKQ 206 (516)
T ss_pred CCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhh--hhhHhhhhHHHHH
Confidence 4444444444433 333455666655 47999999999999988654433221 22344322 5778999999999
Q ss_pred HhcCceecCCcchHHHHHHHHhhccccchH
Q 008916 197 MYSNTLSTTAAPALLDVLMAADKFEVASCM 226 (549)
Q Consensus 197 iYtg~l~i~~~~~v~~lL~aA~~l~l~~L~ 226 (549)
+|-..-.+-. +.-..|+.+..+|+++.|.
T Consensus 207 lyl~~na~~~-~qynallsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 207 LYLNTNAEWK-DQYNALLSIEVKFSKEKLS 235 (516)
T ss_pred HHHhhhhhhh-hHHHHHHhhhhhccHHHhH
Confidence 9976211222 3446677777777766554
No 64
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=85.10 E-value=0.72 Score=37.03 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=30.0
Q ss_pred chHHHHHHHHhhccccchHHHHHHHHHcC--CCChhhHHHHHHh
Q 008916 208 PALLDVLMAADKFEVASCMRYCSRLLRNM--PMTPESALLYLEL 249 (549)
Q Consensus 208 ~~v~~lL~aA~~l~l~~L~~~C~~~L~~l--~l~~~n~~~il~l 249 (549)
+.+.+|+.||++|+|+.|.+.|++++..+ ..+++....++.+
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi 57 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGI 57 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT-
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCC
Confidence 58999999999999999999999988661 2344444444443
No 65
>PF13964 Kelch_6: Kelch motif
Probab=82.98 E-value=0.98 Score=32.50 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=18.9
Q ss_pred ceEEEEcCccC-CC--CceEEc-c----Ccee
Q 008916 503 GNYTFTGGKAV-GY--RNLFAI-P----WTSF 526 (549)
Q Consensus 503 ~~iyv~GG~~~-~~--~~v~~y-p----W~~~ 526 (549)
..|||+||... .. +++++| | |+.+
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEEC
Confidence 34899999887 33 889999 7 9765
No 66
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=77.74 E-value=1.2 Score=45.36 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=47.2
Q ss_pred CCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCHHHHhcc
Q 008916 237 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAI 295 (549)
Q Consensus 237 ~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~~~l~~L 295 (549)
.++++|++.|+--++-. .++.|.+.|+.|+..|+.+|+...-++..|+.+.+..|
T Consensus 71 ~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 68999999999777666 78899999999999999999994457778998888776
No 67
>PLN02772 guanylate kinase
Probab=77.19 E-value=2.8 Score=44.20 Aligned_cols=48 Identities=8% Similarity=-0.054 Sum_probs=39.4
Q ss_pred ccceeeecc-------CceeeeecCcCCeeee------cccccccceeeec-CCceeeeeeeecCc
Q 008916 397 VERAYKYRP-------VKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQAFHLGGQ 448 (549)
Q Consensus 397 ~~~~~~~~~-------~~~v~~~~p~~~~w~~------l~~~r~~~~~~~~-~g~iY~~~~v~GG~ 448 (549)
.+++|++++ ...+.+||+.++.|.. -|.+|.+|+++++ +++|+ |+++-
T Consensus 34 gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~ril----v~~~~ 95 (398)
T PLN02772 34 GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRIL----VIKKG 95 (398)
T ss_pred CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEE----EEeCC
Confidence 377888765 2578999999999988 5788999998877 78999 99764
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=76.82 E-value=2.6 Score=30.17 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=20.6
Q ss_pred CCceeeeeeeecCccc---cccccc---------c-----ccCCCcceEEEEE
Q 008916 435 SGRVYSQAFHLGGQGF---FLSAHC---------N-----MDQQSSFHCFGLF 470 (549)
Q Consensus 435 ~g~iY~~~~v~GG~g~---~~~~~~---------~-----m~~~r~~~~~~~~ 470 (549)
+++|| +.||.+. ...+.+ | ++.+|..|+++++
T Consensus 1 g~~~~----vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLY----VFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEE----EECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 46788 9999851 111222 2 8888888887763
No 69
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=75.37 E-value=2.8 Score=30.02 Aligned_cols=27 Identities=11% Similarity=-0.149 Sum_probs=23.4
Q ss_pred ceeeeecCcCCeeee---cccccccceeee
Q 008916 407 KVVEFERPRQQCVVY---LDLKREECENLF 433 (549)
Q Consensus 407 ~~v~~~~p~~~~w~~---l~~~r~~~~~~~ 433 (549)
+.+..||+.+++|.. +|.+|..|++++
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 678899999999999 678899998875
No 70
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=74.69 E-value=2.8 Score=44.89 Aligned_cols=107 Identities=20% Similarity=0.152 Sum_probs=63.2
Q ss_pred ccccccceeeecCC--ceeeeeeeecCc-cccccccc---------c--------ccCCCcceEEEEEeC--eec-----
Q 008916 423 DLKREECENLFPSG--RVYSQAFHLGGQ-GFFLSAHC---------N--------MDQQSSFHCFGLFLG--MQE----- 475 (549)
Q Consensus 423 ~~~r~~~~~~~~~g--~iY~~~~v~GG~-g~~~~~~~---------~--------m~~~r~~~~~~~~~g--~i~----- 475 (549)
|..|.+|..+.-.+ +|| .-||. |..-.+.. | .+-+|++|-++.-.. +++
T Consensus 258 p~~RgGHQMV~~~~~~CiY----LYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y 333 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVY----LYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRY 333 (723)
T ss_pred ccccCcceEEEeCCCcEEE----EecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhc
Confidence 45577787776555 899 99997 31111111 2 566778887765444 331
Q ss_pred CC-------cceeeeccccceeecC---CcceecCCCc----e----------------EEEEcCccCCC-----CceEE
Q 008916 476 KG-------SVSFAVDYEFAARSKP---TEEFVSKYKG----N----------------YTFTGGKAVGY-----RNLFA 520 (549)
Q Consensus 476 ~g-------~l~~tV~~~~~E~ydp---~W~~v~~l~~----~----------------iyv~GG~~~~~-----~~v~~ 520 (549)
-+ +.++-. .+||. .|+.++-=-. | +||.||..-.. ..++.
T Consensus 334 ~~sS~r~~~s~RsDf-----W~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYa 408 (723)
T KOG2437|consen 334 LDSSVRNSKSLRSDF-----WRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYA 408 (723)
T ss_pred cccccccccccccce-----EEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEE
Confidence 11 112223 56776 8887642211 1 89999965332 45777
Q ss_pred c-c----Ccee-------------------------eeCCeeEEEcCc
Q 008916 521 I-P----WTSF-------------------------MADDSLYFINGI 538 (549)
Q Consensus 521 y-p----W~~~-------------------------~~~~~iyviGG~ 538 (549)
| . |... .-+.++|++||.
T Consensus 409 f~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq 456 (723)
T KOG2437|consen 409 FNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQ 456 (723)
T ss_pred EecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCc
Confidence 7 3 7654 556889999985
No 71
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.53 E-value=4.5 Score=42.14 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=67.4
Q ss_pred chHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCC
Q 008916 208 PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL 287 (549)
Q Consensus 208 ~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L 287 (549)
+||..++.+|..|+++.|...|..|+.+ |+-+++.-. +...|.+.+ +++++. .+.|...
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr------nA~~lL~~~-------sFn~LSk~s-------L~e~l~-RDsFfAp 206 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR------NADQLLEDP-------SFNRLSKDS-------LKELLA-RDSFFAP 206 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc------CHHhhhcCc-------chhhhhHHH-------HHHHHh-hhcccch
Confidence 6889999999999999999999999977 233333211 222233332 233444 4556555
Q ss_pred CHHHHhcccccCccccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccCC-CCCCHHHHHh
Q 008916 288 PLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRF-PHMTCRKLKK 351 (549)
Q Consensus 288 ~~~~l~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf-~~ls~~~L~~ 351 (549)
..+.+.++.+=-.-+- .+-+..++..++-- .-.+ .+||.+||- ++++|+.+.+
T Consensus 207 E~~IFlAv~~W~~~Ns---ke~~k~~~~~VRLP-------Lm~l-teLLnvVRPsGllspD~iLD 260 (620)
T KOG4350|consen 207 ELKIFLAVRSWHQNNS---KEASKVLLELVRLP-------LMTL-TELLNVVRPSGLLSPDTILD 260 (620)
T ss_pred HHHHHHHHHHHHhcCc---hhhHHHHHHHHhhh-------hccH-HHHHhccCcccCcCHHHHHH
Confidence 5555555544333221 33445555555542 1223 688999997 5668887765
No 72
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=69.37 E-value=15 Score=30.22 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHHhhccccchHHHHHHHHHcCCC------------ChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhh---
Q 008916 211 LDVLMAADKFEVASCMRYCSRLLRNMPM------------TPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYK--- 275 (549)
Q Consensus 211 ~~lL~aA~~l~l~~L~~~C~~~L~~l~l------------~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~--- 275 (549)
.+++..|..|+++.|.+.|.+|+.. ++ +.+....++.--... ..+-..+.+++.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~-nf~~v~~~~~f~~L~~~~l~~iL~~~~l~--v~~E~~v~~av~~W~~~~~~~r~ 78 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK-NFNEVSKSDEFLELPFDQLIEILSSDDLN--VSSEDDVFEAVLRWLKHNPENRE 78 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH-THHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH-HHHHHccchhhhcCCHHHHHHHHhccccc--cccHHHHHHHHHHHHHhCHHHHH
Confidence 5789999999999999999999876 33 333344444322111 11234688888888876543
Q ss_pred ----hhhccchhhcCCCHHHHhccc
Q 008916 276 ----DMTKFQDEVMALPLAGVEAIL 296 (549)
Q Consensus 276 ----~v~~~s~~fl~L~~~~l~~LL 296 (549)
.+.+ .=.|..|+.+.|...+
T Consensus 79 ~~~~~Ll~-~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 79 EHLKELLS-CIRFPLLSPEELQNVV 102 (103)
T ss_dssp TTHHHHHC-CCHHHCT-HHHHHHCC
T ss_pred HHHHHHHH-hCCcccCCHHHHHHHH
Confidence 2333 3345556665555443
No 73
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=61.16 E-value=28 Score=32.06 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=67.7
Q ss_pred eEEEEe--EEEEchHHHhcccCHHHHHhhcCCCCCC----CcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHHH
Q 008916 140 STVVRV--KTLHISSPILAAKSPFFYKLFSNGMKES----EQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 213 (549)
Q Consensus 140 dv~l~~--~~f~aHr~iLaa~S~yF~~mf~~~~~Es----~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~l 213 (549)
=|.+.+ ..|.--|.-|..-+.-|-..|.+.-.+. ...--.|- +-+|.-|.-+|+|+-.|++.++. -.=..+
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklvl~~-l~eeGv 98 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLVLNK-LSEEGV 98 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhhhhh-hhhhcc
Confidence 344444 4688888888777766665554432221 12223333 67899999999999999999887 466789
Q ss_pred HHHHhhccccchHHHHHHHHHc
Q 008916 214 LMAADKFEVASCMRYCSRLLRN 235 (549)
Q Consensus 214 L~aA~~l~l~~L~~~C~~~L~~ 235 (549)
|.-|++|.++.|+++..+.|..
T Consensus 99 L~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 99 LEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred chhhhccCChHHHHHHHHHHHH
Confidence 9999999999999888887765
No 74
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=48.43 E-value=35 Score=33.69 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=46.8
Q ss_pred eeeeecCcCCeeeeccccccc-ce--eeecCCceeeeeeeecCc--cc------ccc---ccc-c------ccCCCcceE
Q 008916 408 VVEFERPRQQCVVYLDLKREE-CE--NLFPSGRVYSQAFHLGGQ--GF------FLS---AHC-N------MDQQSSFHC 466 (549)
Q Consensus 408 ~v~~~~p~~~~w~~l~~~r~~-~~--~~~~~g~iY~~~~v~GG~--g~------~~~---~~~-~------m~~~r~~~~ 466 (549)
.-..|||.++++..|.....- |+ +.-.||.+. ++||. |. ... ..| | |..+|++..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll----~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLL----QTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEE----EeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 344589999999998765333 43 456799999 99997 21 111 123 2 999999998
Q ss_pred EEEE-eCee--cCCcceeee
Q 008916 467 FGLF-LGMQ--EKGSVSFAV 483 (549)
Q Consensus 467 ~~~~-~g~i--~~g~l~~tV 483 (549)
...+ +|++ -.|+...+.
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~ 142 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTY 142 (243)
T ss_pred ceECCCCCEEEEeCcCCCcc
Confidence 8765 6776 234433334
No 75
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=45.21 E-value=56 Score=35.21 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCH
Q 008916 237 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPL 289 (549)
Q Consensus 237 ~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~ 289 (549)
.+..+|++.++..|+.| ..+.|++.|.+||..+... -.+|+.|+.
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~----~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMA----DNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCC----hHHHHHHHH
Confidence 57899999999999999 8999999999999877543 344555554
No 76
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=44.10 E-value=66 Score=32.43 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=31.6
Q ss_pred eeecCCcceecCCCceEEEEcCccCCCCceEEcc--C------ceeeeCCeeEEEcCc
Q 008916 489 ARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIP--W------TSFMADDSLYFINGI 538 (549)
Q Consensus 489 E~ydp~W~~v~~l~~~iyv~GG~~~~~~~v~~yp--W------~~~~~~~~iyviGG~ 538 (549)
||-.-+|+.|-.-+-.+|++. ...|.-+..-.| + ..++-+|.+|++||-
T Consensus 117 qRTTenWNsVvDC~P~VfLiD-leFGC~tah~lpEl~dG~SFHvslar~D~VYilGGH 173 (337)
T PF03089_consen 117 QRTTENWNSVVDCPPQVFLID-LEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGH 173 (337)
T ss_pred ccchhhcceeccCCCeEEEEe-ccccccccccchhhcCCeEEEEEEecCceEEEEccE
Confidence 444449999999998899995 222221222225 1 223788999999994
No 77
>PLN02772 guanylate kinase
Probab=44.00 E-value=79 Score=33.60 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=16.8
Q ss_pred ccccceeeecCCceeeeeeeecCc
Q 008916 425 KREECENLFPSGRVYSQAFHLGGQ 448 (549)
Q Consensus 425 ~r~~~~~~~~~g~iY~~~~v~GG~ 448 (549)
++..+.++++++++| ++||.
T Consensus 24 ~~~~~tav~igdk~y----v~GG~ 43 (398)
T PLN02772 24 PKNRETSVTIGDKTY----VIGGN 43 (398)
T ss_pred CCCcceeEEECCEEE----EEccc
Confidence 466677888999999 99996
No 78
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=39.78 E-value=45 Score=32.98 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=26.4
Q ss_pred EEEEcCccCCCCceEEc-c--------Ccee---------------eeCCeeEEEcCcc
Q 008916 505 YTFTGGKAVGYRNLFAI-P--------WTSF---------------MADDSLYFINGIL 539 (549)
Q Consensus 505 iyv~GG~~~~~~~v~~y-p--------W~~~---------------~~~~~iyviGG~~ 539 (549)
+.++||...+.+.+-.| | |.+. .-||++.|+||..
T Consensus 80 ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 80 LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 88899987766666666 6 5543 6689999999964
No 79
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=37.15 E-value=70 Score=31.07 Aligned_cols=85 Identities=9% Similarity=0.141 Sum_probs=55.2
Q ss_pred EEEEchHHH-h-cccCHHHHHhhcCCCCC--CCcceEEEecCCCcHHHHHHHhHhHhcCceecCCc-chHHHHHHHHhhc
Q 008916 146 KTLHISSPI-L-AAKSPFFYKLFSNGMKE--SEQRHVALRINASEEAALMELLNFMYSNTLSTTAA-PALLDVLMAADKF 220 (549)
Q Consensus 146 ~~f~aHr~i-L-aa~S~yF~~mf~~~~~E--s~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~-~~v~~lL~aA~~l 220 (549)
+++..|+.- | +-.-....+||++...- .......| +=+-..|+.||+|+-|..+.+.+. .++..|..-|++|
T Consensus 17 G~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~ 93 (221)
T KOG2723|consen 17 GAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFF 93 (221)
T ss_pred CeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHH
Confidence 344444432 3 23334556777763221 22344555 457789999999999966666552 4789999999999
Q ss_pred cccchHHHHHHHH
Q 008916 221 EVASCMRYCSRLL 233 (549)
Q Consensus 221 ~l~~L~~~C~~~L 233 (549)
+++.+...+.+-.
T Consensus 94 ~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 94 QLEAPVTYLLNSG 106 (221)
T ss_pred ccccHHHHHhccc
Confidence 9998876555443
No 80
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=33.01 E-value=1.4e+02 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.5
Q ss_pred HHHHHHHhhccccchHHHHHHHHHc
Q 008916 211 LDVLMAADKFEVASCMRYCSRLLRN 235 (549)
Q Consensus 211 ~~lL~aA~~l~l~~L~~~C~~~L~~ 235 (549)
.+++.+|+.|+.+.|.+.|.+|+.+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHH
Confidence 3577889999999999999999766
No 81
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=32.39 E-value=54 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.7
Q ss_pred CC-hhhHHHHHHhhhhcccccChHHHHHHHHHHHHhh
Q 008916 238 MT-PESALLYLELPSSVLMGEAVQPLTDAARQYLASR 273 (549)
Q Consensus 238 l~-~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~n 273 (549)
++ .+++..++.+|..+ +++.|.+.|.+++.++
T Consensus 78 ~~~~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 44 78999999999999 8999999999999875
No 82
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=20.76 E-value=7.1e+02 Score=24.84 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=78.9
Q ss_pred CcHHHHHHHhHhHhcCceecCCcchHHHHHHHHhhccccc-hHHHHHHHHHcCCCChhhHHHHHHhhhhcc---cccChH
Q 008916 185 SEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVAS-CMRYCSRLLRNMPMTPESALLYLELPSSVL---MGEAVQ 260 (549)
Q Consensus 185 ~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aA~~l~l~~-L~~~C~~~L~~l~l~~~n~~~il~lA~~~~---~a~~~~ 260 (549)
..-..++.++.-+...+-.++. ..+..||.+|..++... ++..-++.+.. +++..+.-.++--+ .+. ..+...
T Consensus 68 ~~r~llEtiV~lLP~e~~svsc-~FL~~LLr~A~~l~as~~cr~~Le~rIg~-qLd~AtldDLLIP~-~~~~~~t~yDVd 144 (258)
T PF03000_consen 68 EQRELLETIVSLLPPEKGSVSC-SFLFRLLRAAIMLGASSACRNELERRIGS-QLDQATLDDLLIPS-SPSGEDTLYDVD 144 (258)
T ss_pred HHHHHHHHHHHhCCCCCCcccH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HhhhccHHHhcccC-CCCcccchhhHH
Confidence 3557888888888887777777 68999999999999875 22333333333 45555555554333 110 001233
Q ss_pred HHHHHHHHHHHhh---------------------hhhhhccchhh-------cCCCHHHHhccccc-CccccCChHHHHH
Q 008916 261 PLTDAARQYLASR---------------------YKDMTKFQDEV-------MALPLAGVEAILSS-DDLQIASEDAVYD 311 (549)
Q Consensus 261 ~L~~~~~~fi~~n---------------------f~~v~~~s~~f-------l~L~~~~l~~LL~s-d~L~v~sE~~V~~ 311 (549)
-+......|+... ...|.+.-+.| .+|+...+..|... .+-.-.+-+.+|.
T Consensus 145 ~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYr 224 (258)
T PF03000_consen 145 LVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYR 224 (258)
T ss_pred HHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHH
Confidence 3333334444330 00000000111 25666666555542 1111246789999
Q ss_pred HHHHHHHHhC-CChHHHHHHHHHHhhcc
Q 008916 312 FVLKWARAQY-PRVEERREVLGSRLARF 338 (549)
Q Consensus 312 av~~Wi~~~~-~~~~~R~~~l~~~Ll~~ 338 (549)
||-.+++.++ .+.++|.+ + -++|.|
T Consensus 225 AID~YLk~Hp~ls~~Er~~-l-C~~ldc 250 (258)
T PF03000_consen 225 AIDIYLKAHPGLSEEERKR-L-CRLLDC 250 (258)
T ss_pred HHHHHHHHcccCCHHHHHH-H-HhhCCc
Confidence 9999999764 23344433 3 345444
Done!