BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008917
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C5S|A Chain A, Crystal Structure Of Bacillus Anthracis Thii, A Trna-
Modifying Enzyme Containing The Predicted Rna-Binding
Thump Domain
Length = 413
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 422 PTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARSTFGYVAQGLAG 481
P + G ++ E + T +VHN + + S ++ R G + G+ G
Sbjct: 136 PEIGGHIL-------ENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGG 188
Query: 482 KKPLILYKIEDKKIPNPVCG-----RAVSLEPC-FHSPPIYDCKAKREV 524
K ++L I +PV R VS+E FHSPP +AK++V
Sbjct: 189 KVMVLL----SGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKV 233
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
Length = 403
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 340 KYLAEAEERIGIQIRIFDKKTSPFQQVM--DQILTCTFKEK 378
+ L E+ R+ IQ+ + D SP +Q+ D +T +FKE+
Sbjct: 37 RMLVESANRLNIQVNVLDADNSPAKQISAHDGHVTGSFKER 77
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|B Chain B, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|C Chain C, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|D Chain D, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
Length = 403
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 340 KYLAEAEERIGIQIRIFDKKTSPFQQVM--DQILTCTFKEK 378
+ L E+ R+ IQ+ + D SP +Q+ D +T +FKE+
Sbjct: 37 RMLVESANRLNIQVNVLDADNSPAKQISAHDGHVTGSFKER 77
>pdb|2OCX|A Chain A, Crystal Structure Of Se-Met Fucosyltransferase Nodz From
Bradyrhizobium
Length = 330
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 156 RYVVWVAKCGLGNRMLSITSAFLYALLTNRVLLI------YEEADMANVF 199
R+V+ + G G+ + S+ SA+ YA T R L+I Y E +N F
Sbjct: 5 RFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAF 54
>pdb|2HHC|A Chain A, Crystal Structure Of Fucosyltransferase Nodz From
Bradyrhizobium
pdb|2HLH|A Chain A, Crystal Structure Of Fucosyltransferase Nodz From
Bradyrhizobium
pdb|3SIW|A Chain A, Crystal Structure Of Nodz Alpha-1,6-Fucosyltransferase
Co-Crystallized With Gdp
pdb|3SIX|A Chain A, Crystal Structure Of Nodz Alpha-1,6-Fucosyltransferase
Soaked With Gdp-Fucose
Length = 330
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 156 RYVVWVAKCGLGNRMLSITSAFLYALLTNRVLLI------YEEADMANVF 199
R+V+ + G G+ + S+ SA+ YA T R L+I Y E +N F
Sbjct: 5 RFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAF 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,990,875
Number of Sequences: 62578
Number of extensions: 655244
Number of successful extensions: 1396
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 11
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)