Query 008917
Match_columns 549
No_of_seqs 137 out of 162
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 18:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03254 XG_FTase: Xyloglucan 100.0 1E-188 2E-193 1485.9 41.6 449 70-520 26-476 (476)
2 PF05830 NodZ: Nodulation prot 99.7 5.5E-17 1.2E-21 166.0 16.4 144 324-488 146-300 (321)
3 PF10250 O-FucT: GDP-fucose pr 98.1 1.1E-05 2.5E-10 82.8 9.2 146 323-478 172-337 (351)
4 PF01531 Glyco_transf_11: Glyc 97.5 0.00064 1.4E-08 69.9 10.7 106 344-491 161-276 (298)
5 KOG3705 Glycoprotein 6-alpha-L 93.6 0.077 1.7E-06 57.6 4.4 156 301-479 317-483 (580)
6 KOG3849 GDP-fucose protein O-f 47.6 27 0.00058 37.1 4.5 278 151-475 25-359 (386)
7 cd00550 ArsA_ATPase Oxyanion-t 28.2 75 0.0016 32.1 4.2 36 156-191 1-36 (254)
8 PRK10727 DNA-binding transcrip 26.7 3.3E+02 0.0071 27.8 8.6 124 354-488 20-144 (343)
9 cd07023 S49_Sppa_N_C Signal pe 24.1 49 0.0011 32.2 2.0 47 452-498 79-136 (208)
10 cd07018 S49_SppA_67K_type Sign 22.7 41 0.00088 33.4 1.1 54 452-505 90-154 (222)
11 PF02374 ArsA_ATPase: Anion-tr 22.5 97 0.0021 32.5 3.9 50 156-205 2-53 (305)
12 PRK10014 DNA-binding transcrip 20.9 3E+02 0.0066 27.8 7.0 116 362-488 33-150 (342)
13 PRK10401 DNA-binding transcrip 20.6 4.7E+02 0.01 26.6 8.4 116 362-488 28-144 (346)
No 1
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=100.00 E-value=1.1e-188 Score=1485.92 Aligned_cols=449 Identities=63% Similarity=1.104 Sum_probs=431.5
Q ss_pred ccccCCCCcccccCCCCCCCCCCCcccchhhhhccccCCCCCCChHHHHHHHHHHHhhcccCCCchhHHHHHHHHhcCCC
Q 008917 70 SQVAGELTSDRLLGGLLSPNFTRRSCLSRYQSISYRKSSRHEPSSYLISRLREYERLHKRCGPYAESYKKSIKEMVSGRI 149 (549)
Q Consensus 70 ~~~~~~~~~d~llggLl~~~fde~sC~SRy~s~lyrk~s~~~pSpyL~skLR~YE~lHrrCgp~t~~Y~~a~~~l~sg~~ 149 (549)
...+....+||||||||++||||+||+||||+++|||+++|+|||||++|||+||+|||||||||++|++|++||+||++
T Consensus 26 ~~~~~~~~~d~llgglL~~~fde~sC~SRy~~~~yrk~s~~~pSpyL~skLR~YE~lHrrCgp~t~~y~~a~~~L~s~~~ 105 (476)
T PF03254_consen 26 SSQSAESPNDKLLGGLLSPGFDERSCLSRYQSSLYRKPSPHKPSPYLVSKLRRYEALHRRCGPGTESYNKAVEQLRSGHS 105 (476)
T ss_pred cCCccccccccccccccCCCCCcccccchhhhhhhcCCCCCCCCHHHHHHHHHHHHHHhhhCCCchhhHHHHHHHhccCC
Confidence 34445566799999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceEEEEeccCCcchhHHHHHHHHHHHHHhCcEeeeecCCCccccccCCCCCCcccCCCCCCchhhcccccccchh
Q 008917 150 DSSSACRYVVWVAKCGLGNRMLSITSAFLYALLTNRVLLIYEEADMANVFCEPFPDTTWLLPKDFPFNYRLSRFKQKYAK 229 (549)
Q Consensus 150 ~~~~~CkYvVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~ 229 (549)
+++++||||||++++|||||||+||||||||||||||||||+++||++|||||||||||+||+|||+.+.+.+++.++++
T Consensus 106 ~~~~~CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~~~~~~~ 185 (476)
T PF03254_consen 106 DGTSECKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGFSQESAE 185 (476)
T ss_pred CCCCCCcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCCCCCchH
Confidence 88999999999999999999999999999999999999999999999999999999999999999997633889999999
Q ss_pred hHHhhhhcCCCCcccCCCCCCcEEEEEeecCCCCCCceeecccccccccCcCEEEEeccccccccccCCcccHHHHhhcC
Q 008917 230 SFGNTLKNNNNKISVSTEQLPSHLYLYLSHDYSHHDKLFFCDQDQIVLRNIPWLIIKSDVYFLPSLFLMPSFEEELSKLF 309 (549)
Q Consensus 230 syg~~l~~~~~~~~~~~~~~p~~~yl~L~h~~~~~D~~FFCd~~Q~~L~~vpWLi~~Sd~YFvP~LFl~P~f~~eL~~lF 309 (549)
|||||++|+.++.+ ...+|+|+|+||+|+++++|++||||++|++|+|||||+|+||+||||+||++|+||+||++||
T Consensus 186 sygnml~~~~~~~~--~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl~P~f~~eL~~lF 263 (476)
T PF03254_consen 186 SYGNMLKNKSINNS--DNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFLVPSFRPELDRLF 263 (476)
T ss_pred HHHHHHhcCCcccc--ccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhhchHHHHHHHHhc
Confidence 99999999998855 3478999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCCCchHHHHHHHHHHHhhccCCCCcC-CCCc
Q 008917 310 PDKETVFHHLGRYLFHPSNQVWTLITSYYKKYLAEAEERIGIQIRIFDKKTSPFQQVMDQILTCTFKEKLLPQVD-MGKS 388 (549)
Q Consensus 310 P~kd~VFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~~p~~~v~~qIl~Ct~~e~lLPev~-~~~~ 388 (549)
|+||+||||||||||||+|+||++|+|||++|||+||+|||||||+|+.+++|+++++|||++|+++|||||++. +++.
T Consensus 264 P~k~tvFhhL~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e~LLP~v~~~~~~ 343 (476)
T PF03254_consen 264 PEKDTVFHHLGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQEKLLPEVVDTQEP 343 (476)
T ss_pred CChhHHHHHHHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhhcccCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994 3443
Q ss_pred -ccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCceeec
Q 008917 389 -IVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTS 467 (549)
Q Consensus 389 -~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS 467 (549)
++++.++.++||||||||++||||+||+|||+++|++||+|+||||||||+|++|+++|||||||||||||+||+||||
T Consensus 344 ~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS 423 (476)
T PF03254_consen 344 AASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTS 423 (476)
T ss_pred cccccCCCCceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEec
Confidence 4567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHhhhcCCCceEeeccCCCCCCCCCcccCCCCCCCCCCCCCcccCc
Q 008917 468 ARSTFGYVAQGLAGKKPLILYKIEDKKIPNPVCGRAVSLEPCFHSPPIYDCKA 520 (549)
Q Consensus 468 ~~STFGYVAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~ydC~~ 520 (549)
+|||||||||||||||||||++|+|+++|||||+|++|||||||+||+|||+|
T Consensus 424 ~~STFGYVAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~~dC~a 476 (476)
T PF03254_consen 424 GWSTFGYVAQGLGGLRPWILYKPENQTVPDPPCVRAMSMEPCFHAPPFYDCKA 476 (476)
T ss_pred CCCCchhHHHhhcCCCceEEecCcccCCCCCCCcCCCCCCCCCCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999986
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.73 E-value=5.5e-17 Score=165.95 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=88.9
Q ss_pred cCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCC-----Cch-H--HHHHHHHHHHhhccCCCCcCCCCcccCCCCC
Q 008917 324 FHPSNQVWTLITSYYKKYLAEAEERIGIQIRIFDKKT-----SPF-Q--QVMDQILTCTFKEKLLPQVDMGKSIVAPSGK 395 (549)
Q Consensus 324 fhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~-----~p~-~--~v~~qIl~Ct~~e~lLPev~~~~~~~~~~~~ 395 (549)
+.|+.+|-.+|..+|+.|+++ ...|||+||..+.+. ..+ + ..+++|..-..+.+-++ .
T Consensus 146 lkpR~eIqarID~iy~ehf~g-~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~-------------~ 211 (321)
T PF05830_consen 146 LKPRPEIQARIDAIYREHFAG-YSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALA-------------P 211 (321)
T ss_dssp S-B-HHHHHHHHHHHHHHTTT-SEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS---------------
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhcc-------------C
Confidence 689999999999999999994 569999999765431 111 1 24667765555544443 2
Q ss_pred CcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhcccc--hhhhHHHHHHHHHhccCCcee-ecCCCch
Q 008917 396 GKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTN--NVHNQKALAEINLLSMMDVLV-TSARSTF 472 (549)
Q Consensus 396 ~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~--~~h~~kAlaEmyLLS~sD~LV-tS~~STF 472 (549)
.+.+.|||+|++++..|++|..|...-|. ..-+++++.+.-+..+ ..+-.+||+||||||.||+|| .|+-|+|
T Consensus 212 ~k~~~IFLATDSaeVid~fr~~FPdiiti----~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~F 287 (321)
T PF05830_consen 212 PKPVRIFLATDSAEVIDQFRKKFPDIITI----PKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAF 287 (321)
T ss_dssp SS-EEEEEEES-HHHHHHHHHHSTTEE--------------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GG
T ss_pred CCCeeEEEecCcHHHHHHHHHHCCCeEEc----ccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchh
Confidence 35679999999999999999999643322 1226677764333222 123478999999999999999 8999999
Q ss_pred hHHHhhhcCCCceEee
Q 008917 473 GYVAQGLAGKKPLILY 488 (549)
Q Consensus 473 GYVAqgLgGl~PwiL~ 488 (549)
+-+|+=++ |=++-
T Consensus 288 sr~asl~~---pr~~~ 300 (321)
T PF05830_consen 288 SRYASLFV---PRVIE 300 (321)
T ss_dssp GHHHHHH----SEEEE
T ss_pred hhHHHHhc---chhee
Confidence 99999777 77663
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.10 E-value=1.1e-05 Score=82.76 Aligned_cols=146 Identities=21% Similarity=0.229 Sum_probs=67.6
Q ss_pred ccCCchhHHHHHHHHHHHhhhcccceeeEEEEEe-cC----CCCchHHHHHHHHHHHhhccCCCCcCCC---Cc----cc
Q 008917 323 LFHPSNQVWTLITSYYKKYLAEAEERIGIQIRIF-DK----KTSPFQQVMDQILTCTFKEKLLPQVDMG---KS----IV 390 (549)
Q Consensus 323 LfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf-~~----~~~p~~~v~~qIl~Ct~~e~lLPev~~~---~~----~~ 390 (549)
.+++++.|-.+.++|-+..+++...=|||++|+- |. ......+.+ +-.+|..+..+.+..... -+ .+
T Consensus 172 ~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (351)
T PF10250_consen 172 YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLL-ASPRCWGKKSINPEKKRRNGCCPSTPQEA 250 (351)
T ss_dssp G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----T-TTHHHH-GGGTT-----HHHHS--HHHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHH-HHhHhhccccccchhhhhcCCCCChHHHH
Confidence 6899999999999999999966678899999997 43 000000001 112333222222211000 00 00
Q ss_pred ----CCCCCCcceEEEEeccChh----HHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCC
Q 008917 391 ----APSGKGKSKAVLLTSLIPS----YYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMD 462 (549)
Q Consensus 391 ----~~~~~~k~kaVlVtSL~~~----y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD 462 (549)
...+..+.+.|+|||.... ..+.++++|.+.-+. +.+ ++++|.+.+.+ ++.|++|+++++.||
T Consensus 251 ~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~--~~~----~~~~~~~~~~~---~~~a~vD~~i~~~s~ 321 (351)
T PF10250_consen 251 KQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTK--DDL----LSHEELEPLND---DQLAMVDQEICSRSD 321 (351)
T ss_dssp HHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGG--GT------EE--S--------S--HHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEec--ccc----CCHHHhhhccc---cchhHHHHHHHhcCC
Confidence 0112234589999999931 235566655432221 111 23456555544 789999999999999
Q ss_pred ceeecCCCchhHHHhh
Q 008917 463 VLVTSARSTFGYVAQG 478 (549)
Q Consensus 463 ~LVtS~~STFGYVAqg 478 (549)
+.|.|..|||-..-.+
T Consensus 322 ~Figt~~Stfs~~i~~ 337 (351)
T PF10250_consen 322 VFIGTCGSTFSSNIAR 337 (351)
T ss_dssp EEEE-TT-HHHHHHHH
T ss_pred EEEecCcchhHHHhhc
Confidence 9999999999865443
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=97.51 E-value=0.00064 Score=69.90 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=65.1
Q ss_pred cccceeeEEEEEecCCCCch---------HHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEeccChhHHH-H
Q 008917 344 EAEERIGIQIRIFDKKTSPF---------QQVMDQILTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSYYE-K 413 (549)
Q Consensus 344 ~A~~rIGIQIRvf~~~~~p~---------~~v~~qIl~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y~e-~ 413 (549)
....-|||+||..|-...+. .+.+.+-++-..+.. ++ ..++|.|+..++-+ +
T Consensus 161 ~~~~~V~VHIRRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~--~~----------------~~f~ifSDD~~w~k~~ 222 (298)
T PF01531_consen 161 KNSNSVCVHIRRGDYVSNGNHNWKHGICDKDYYKKAIEYIREKV--KN----------------PKFFIFSDDIEWCKEN 222 (298)
T ss_pred cCCCeEEEEEEchhccccccccccCCCCCHHHHHHHHHHHHHhC--CC----------------CEEEEEcCCHHHHHHH
Confidence 34677999999877542221 234444333332211 11 26888999886664 3
Q ss_pred HHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCceeecCCCchhHHHhhhcCCCceEeeccC
Q 008917 414 LKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARSTFGYVAQGLAGKKPLILYKIE 491 (549)
Q Consensus 414 lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYVAqgLgGl~PwiL~~~~ 491 (549)
++.. .+..+ +.. + ..++.||+|||.||+.|.| -||||.-|+=|++= +=+.+.|.
T Consensus 223 l~~~-------~~~~~-~~~----------~----~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~~-~~i~i~p~ 276 (298)
T PF01531_consen 223 LKFS-------NGDVY-FSG----------N----NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSKN-DKIVIAPI 276 (298)
T ss_pred Hhhc-------CCcEE-EEC----------C----CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCCC-CCEEEECC
Confidence 3221 11111 111 1 3688899999999999999 59999999999874 44443443
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.077 Score=57.63 Aligned_cols=156 Identities=22% Similarity=0.328 Sum_probs=95.3
Q ss_pred cHHHHhhcCCCccchh--hhhcccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCCC-----chHHHHHHH---
Q 008917 301 FEEELSKLFPDKETVF--HHLGRYLFHPSNQVWTLITSYYKKYLAEAEERIGIQIRIFDKKTS-----PFQQVMDQI--- 370 (549)
Q Consensus 301 f~~eL~~lFP~kd~VF--hhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~~-----p~~~v~~qI--- 370 (549)
.-+.|.++--+.- || .+.-.||+.|....-..+++=-.. |.-...-||+|||..+.-.+ +.++.|.-+
T Consensus 317 La~rL~rlHgdP~-vwwVgqFikYL~Rpqp~t~~~l~~a~k~-lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~ 394 (580)
T KOG3705|consen 317 LAERLTRLHGDPP-VWWVGQFIKYLMRPQPATQEKLDKALKS-LGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIW 394 (580)
T ss_pred HHHHHHHhcCCCc-eeeHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHH
Confidence 4455666666653 43 567789999999988877654332 33234779999999885532 234444422
Q ss_pred HHHHhhccCCCCcCCCCcccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEe-cCCcchhhcccchhhhH
Q 008917 371 LTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVY-QPSHEEKQRSTNNVHNQ 449 (549)
Q Consensus 371 l~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~-qPShEe~Q~~~~~~h~~ 449 (549)
..-. +.+ ...-.+.||++|+.+...++.|+.|.+..--+..-|... |- .-++-+. .-+
T Consensus 395 f~~l-e~r---------------g~~~~rRiflAsDDp~vv~EAk~kYPnYe~igd~eia~~A~l----~nRYTd~-sL~ 453 (580)
T KOG3705|consen 395 FKVL-EKR---------------GKPLERRIFLASDDPTVVPEAKNKYPNYEVIGDTEIAKTAQL----NNRYTDA-SLM 453 (580)
T ss_pred HHHH-HHh---------------CCchhheEEEecCCchhchHhhccCCCcEEeccHHHHHHhhc----cccchhh-hhh
Confidence 1111 111 111246899999999999999999977642111101000 00 0111111 124
Q ss_pred HHHHHHHHhccCCceeecCCCchhHHHhhh
Q 008917 450 KALAEINLLSMMDVLVTSARSTFGYVAQGL 479 (549)
Q Consensus 450 kAlaEmyLLS~sD~LVtS~~STFGYVAqgL 479 (549)
--..||++||.+|.||.|=-|----||.-+
T Consensus 454 GvIlDIh~LS~~d~LVCTFSSQVCRvaYEi 483 (580)
T KOG3705|consen 454 GVILDIHILSKVDYLVCTFSSQVCRVAYEI 483 (580)
T ss_pred heeeeeeeecccceEEEechHHHHHHHHHH
Confidence 556799999999999999888877777544
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.59 E-value=27 Score=37.11 Aligned_cols=278 Identities=18% Similarity=0.279 Sum_probs=138.1
Q ss_pred CCCCceEEEEeccCC-cchhHHHHHHHHHHHHHhCcEeeeecCCCccccccCCCCCCcccCCCCCCchhhcccccccchh
Q 008917 151 SSSACRYVVWVAKCG-LGNRMLSITSAFLYALLTNRVLLIYEEADMANVFCEPFPDTTWLLPKDFPFNYRLSRFKQKYAK 229 (549)
Q Consensus 151 ~~~~CkYvVw~~~~G-LGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~ 229 (549)
+.+.--|+++-|.-| .||+.=-......+|=+-||.|.+.+.-+.. -|.++=+ --|++- -|....-.
T Consensus 25 ~~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~------~pe~~n~---~vpf~~---yF~vepl~ 92 (386)
T KOG3849|consen 25 SWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYK------HPETKNL---MVPFEF---YFQVEPLA 92 (386)
T ss_pred CCCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhcc------CCccccc---ccchhh---eeecccHh
Confidence 445678999998766 9999988888888999999999987643211 1111111 112211 12222222
Q ss_pred hHHhhhhcCCCCcccCCCCCCcEEEEEeec-CCCCCCceeecccc--cc-----------------cccCcCEEEEeccc
Q 008917 230 SFGNTLKNNNNKISVSTEQLPSHLYLYLSH-DYSHHDKLFFCDQD--QI-----------------VLRNIPWLIIKSDV 289 (549)
Q Consensus 230 syg~~l~~~~~~~~~~~~~~p~~~yl~L~h-~~~~~D~~FFCd~~--Q~-----------------~L~~vpWLi~~Sd~ 289 (549)
.|-+++..... +. +|+- -+....+..||++. |+ +...+ -+-+-.+.
T Consensus 93 ~YhRVitm~dF------------m~-klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqf-hvsFv~sE 158 (386)
T KOG3849|consen 93 KYHRVITMQDF------------MK-KLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQF-HVSFVGSE 158 (386)
T ss_pred hhhhheeHHHH------------HH-HhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhhe-Eeeeeccc
Confidence 23332221000 00 0000 01122233333333 00 01111 14445667
Q ss_pred cccccccCCccc--HHHHhhcCCCcc-ch---------------hhhhcccccCCchhHHHHHHHHHHHhhhcccceeeE
Q 008917 290 YFLPSLFLMPSF--EEELSKLFPDKE-TV---------------FHHLGRYLFHPSNQVWTLITSYYKKYLAEAEERIGI 351 (549)
Q Consensus 290 YFvP~LFl~P~f--~~eL~~lFP~kd-~V---------------FhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGI 351 (549)
||.+.=|-...- ++.-..=||.++ -| --.|-+|| .=|.++-+.-+.|-.+.|++ .=|||
T Consensus 159 ~f~~i~Fd~~~~~~~~kW~~kfp~eeyPVLAf~gAPA~FPv~~e~~~lQkYl-~WS~r~~e~~k~fI~a~L~r--pfvgi 235 (386)
T KOG3849|consen 159 YFGDIGFDLNQMGSRKKWLEKFPSEEYPVLAFSGAPAPFPVKGEVWSLQKYL-RWSSRITEQAKKFISANLAR--PFVGI 235 (386)
T ss_pred cccccccchhhcchHHHHHhhCCcccCceeeecCCCCCCccccccccHHHHH-HHHHHHHHHHHHHHHHhcCc--ceeEE
Confidence 888865533332 122222344433 11 12345553 33455556667788888885 67999
Q ss_pred EEEEecCCCCchHHHHH-------HHHHHHhhcc----CCCCcCCCC-cc-----cCCCCC-CcceEEEEeccChhHHHH
Q 008917 352 QIRIFDKKTSPFQQVMD-------QILTCTFKEK----LLPQVDMGK-SI-----VAPSGK-GKSKAVLLTSLIPSYYEK 413 (549)
Q Consensus 352 QIRvf~~~~~p~~~v~~-------qIl~Ct~~e~----lLPev~~~~-~~-----~~~~~~-~k~kaVlVtSL~~~y~e~ 413 (549)
+.|.-.+.-.-.+++-| .--.|.-..+ |-|++-.-+ .. ...-++ ..-|+|||+|++..|.++
T Consensus 236 HLRng~DWvraCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~E 315 (386)
T KOG3849|consen 236 HLRNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDE 315 (386)
T ss_pred EeecCchHHHHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccchhhhHH
Confidence 99975433111111111 0012332111 111110000 00 000011 135899999999999999
Q ss_pred HHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCceeecCCCchhHH
Q 008917 414 LKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARSTFGYV 475 (549)
Q Consensus 414 lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYV 475 (549)
|....- -+| |+||.--. ..+-.|.+.|.-+|..|---.|||.-.
T Consensus 316 ln~aL~-----~~~-i~vh~l~p------------dd~y~dLaIlGqadhFiGNCvSsfsaf 359 (386)
T KOG3849|consen 316 LNEALK-----PYE-IEVHRLEP------------DDMYTDLAILGQADHFIGNCVSSFSAF 359 (386)
T ss_pred HHHhhc-----ccc-eeEEecCc------------ccchhhhhhhcccchhhhhhHHHHHHH
Confidence 875432 222 66664222 246689999999999998888887543
No 7
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=28.22 E-value=75 Score=32.12 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=32.9
Q ss_pred eEEEEeccCCcchhHHHHHHHHHHHHHhCcEeeeec
Q 008917 156 RYVVWVAKCGLGNRMLSITSAFLYALLTNRVLLIYE 191 (549)
Q Consensus 156 kYvVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~ 191 (549)
|+++..+-.|-|.-.++.+.|..+|-.-.||||||.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 577888889999999999999999999999999984
No 8
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=26.67 E-value=3.3e+02 Score=27.76 Aligned_cols=124 Identities=7% Similarity=0.083 Sum_probs=70.3
Q ss_pred EEecCCCCchHHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEec
Q 008917 354 RIFDKKTSPFQQVMDQILTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQ 433 (549)
Q Consensus 354 Rvf~~~~~p~~~v~~qIl~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~q 433 (549)
|+++..+.-.++.-++|++.+.+-+--|+..... ...+..+..+|++.++...|+..+.+--.+.....|-.+-+.
T Consensus 20 rvLn~~~~Vs~~tr~rV~~~a~elgY~pn~~ar~---l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~- 95 (343)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESLSYHPNANARA---LAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIG- 95 (343)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHh---hhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEE-
Confidence 4444443345677789999999988888653211 122345678888888877777766554433333334333333
Q ss_pred CCcchhhcccchhhhHHHHHHHHHhccCCceeecCCC-chhHHHhhhcCCCceEee
Q 008917 434 PSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARS-TFGYVAQGLAGKKPLILY 488 (549)
Q Consensus 434 PShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-TFGYVAqgLgGl~PwiL~ 488 (549)
.+.+.. ..+....++.+-.-.|.+|..+.. +--.+.+-..|+.|.|+.
T Consensus 96 ~~~~~~-------~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~p~vV~i 144 (343)
T PRK10727 96 NGYHNE-------QKERQAIEQLIRHRCAALVVHAKMIPDAELASLMKQIPGMVLI 144 (343)
T ss_pred eCCCCH-------HHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCEEEE
Confidence 222211 123445566666678998887642 223344445566556664
No 9
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=24.14 E-value=49 Score=32.22 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHhccCCceeecCCCchhHHH---hhh--------cCCCceEeeccCCCCCCCC
Q 008917 452 LAEINLLSMMDVLVTSARSTFGYVA---QGL--------AGKKPLILYKIEDKKIPNP 498 (549)
Q Consensus 452 laEmyLLS~sD~LVtS~~STFGYVA---qgL--------gGl~PwiL~~~~~~~~~~p 498 (549)
=+-.+|.+.||.++.++-|+||-++ +.+ -|+++.++...+.....+|
T Consensus 79 s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~ 136 (208)
T cd07023 79 SGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSP 136 (208)
T ss_pred hHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCC
Confidence 4567999999999999999887553 221 3788888866555444444
No 10
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=22.75 E-value=41 Score=33.37 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=39.1
Q ss_pred HHHHHHhccCCceeecCCCchhHHHhhh-----------cCCCceEeeccCCCCCCCCCcccCCC
Q 008917 452 LAEINLLSMMDVLVTSARSTFGYVAQGL-----------AGKKPLILYKIEDKKIPNPVCGRAVS 505 (549)
Q Consensus 452 laEmyLLS~sD~LVtS~~STFGYVAqgL-----------gGl~PwiL~~~~~~~~~~ppC~r~~S 505 (549)
-+..||.|.||.++.++-+.||-++-.. -|+++-++...+.....+|-....+|
T Consensus 90 sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s 154 (222)
T cd07018 90 QGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMS 154 (222)
T ss_pred chhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCC
Confidence 3678999999999999999998865332 28999988766555555555444444
No 11
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=22.48 E-value=97 Score=32.52 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=39.7
Q ss_pred eEEEEeccCCcchhHHHHHHHHHHHHHhCcEeee--ecCCCccccccCCCCC
Q 008917 156 RYVVWVAKCGLGNRMLSITSAFLYALLTNRVLLI--YEEADMANVFCEPFPD 205 (549)
Q Consensus 156 kYvVw~~~~GLGNRmLslaSaFLYALLT~RVLLV--d~~~d~~~LFCEPFpg 205 (549)
|++++.+-.|-|---+|.|.|.-+|---.||||| |+...++|+|.-...+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~ 53 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGG 53 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BS
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCC
Confidence 6888899999999999999999999887899999 5555678888775533
No 12
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=20.87 E-value=3e+02 Score=27.79 Aligned_cols=116 Identities=9% Similarity=0.074 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhc
Q 008917 362 PFQQVMDQILTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQR 441 (549)
Q Consensus 362 p~~~v~~qIl~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~ 441 (549)
-.++.-++|++.+.+.+-.|+.... ....+..+..+|++.++...|+..+.+-..+.....|-.+-++. +...
T Consensus 33 vs~~tr~~V~~~a~elgY~p~~~a~---~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~-~~~~--- 105 (342)
T PRK10014 33 ISTATGERVNQAIEELGFVRNRQAS---ALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQ-GGKD--- 105 (342)
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHH---hhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEe-CCCC---
Confidence 3466778899999999988864221 11234456789999888888888887666555555565454442 2211
Q ss_pred ccchhhhHHHHHHHHHhccCCceeecCCC-c-hhHHHhhhcCCCceEee
Q 008917 442 STNNVHNQKALAEINLLSMMDVLVTSARS-T-FGYVAQGLAGKKPLILY 488 (549)
Q Consensus 442 ~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-T-FGYVAqgLgGl~PwiL~ 488 (549)
...+....+..+-.-.|.+|..+-. . --.+..-...=.|.|+.
T Consensus 106 ----~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~ 150 (342)
T PRK10014 106 ----GEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFA 150 (342)
T ss_pred ----HHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEE
Confidence 1234455555555668888877532 1 23333322222388775
No 13
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=20.55 E-value=4.7e+02 Score=26.64 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhc
Q 008917 362 PFQQVMDQILTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQR 441 (549)
Q Consensus 362 p~~~v~~qIl~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~ 441 (549)
-.++.-+.|++.+.+.+--|+..... ...+..+..+|++..+...|+..+.+-..+.....|-.+-+. .+.++
T Consensus 28 Vs~~tr~kV~~~a~elgY~pn~~a~~---l~~~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~-~~~~~--- 100 (346)
T PRK10401 28 VSADTREAVMKAVSELGYRPNANAQA---LATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIG-NSYHE--- 100 (346)
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHH---hhcCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEE-cCCCC---
Confidence 34677788999999888877652211 122344678888887777787777654444334445334333 22211
Q ss_pred ccchhhhHHHHHHHHHhccCCceeecCCC-chhHHHhhhcCCCceEee
Q 008917 442 STNNVHNQKALAEINLLSMMDVLVTSARS-TFGYVAQGLAGKKPLILY 488 (549)
Q Consensus 442 ~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-TFGYVAqgLgGl~PwiL~ 488 (549)
...++...++.+-.-.|.+|..+.. .--.+..-+..+.|.|+.
T Consensus 101 ----~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~p~vV~i 144 (346)
T PRK10401 101 ----AEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDQIPGMVLI 144 (346)
T ss_pred ----hHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHhcCCCEEEE
Confidence 1223455566555679988887643 223344444555456654
Done!