Query 008917
Match_columns 549
No_of_seqs 137 out of 162
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhc_A NODZ, nodulation fucosy 100.0 1.7E-41 5.6E-46 342.9 8.1 280 153-482 2-299 (330)
2 2de0_X Alpha-(1,6)-fucosyltran 99.6 4.6E-14 1.6E-18 153.2 20.2 204 315-543 265-481 (526)
3 3zy2_A Putative GDP-fucose pro 97.8 0.0001 3.4E-09 76.8 10.8 145 309-477 178-341 (362)
4 4ap5_A GDP-fucose protein O-fu 97.0 0.011 3.7E-07 61.5 14.8 128 318-476 214-372 (408)
5 2cpd_A Apobec-1 stimulating pr 27.2 1.6E+02 0.0056 23.2 6.7 58 396-455 13-71 (99)
6 3kjx_A Transcriptional regulat 18.2 4.5E+02 0.015 25.1 8.9 121 356-488 31-153 (344)
7 1j26_A Immature colon carcinom 16.3 2.2E+02 0.0077 24.8 5.6 56 397-455 40-102 (112)
8 2kvi_A Nuclear polyadenylated 14.2 1.9E+02 0.0065 22.8 4.3 56 396-455 8-65 (96)
9 3dbi_A Sugar-binding transcrip 13.8 2.6E+02 0.0088 26.7 5.9 114 364-489 32-150 (338)
10 2o2g_A Dienelactone hydrolase; 13.7 1.8E+02 0.0063 24.7 4.4 60 279-343 160-223 (223)
No 1
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=100.00 E-value=1.7e-41 Score=342.89 Aligned_cols=280 Identities=18% Similarity=0.178 Sum_probs=195.8
Q ss_pred CCceEEEEeccCCcchhHHHHHHHHHHHHHhCcEeeeecCCCccccccCCCCCCcccCCCCCCchhhcccccccchhhHH
Q 008917 153 SACRYVVWVAKCGLGNRMLSITSAFLYALLTNRVLLIYEEADMANVFCEPFPDTTWLLPKDFPFNYRLSRFKQKYAKSFG 232 (549)
Q Consensus 153 ~~CkYvVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~syg 232 (549)
+.||||||....||||||+.+||||+||++|+|+|+||+.+ ++||+ .|+++|+ |.+||.- . ++++
T Consensus 2 ~~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~---~~y~~-~~~~~~f-p~~F~~v---~-------~~~~ 66 (330)
T 2hhc_A 2 TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG---SCYVE-QPFSNAF-PAFFEPV---E-------DIAG 66 (330)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT---CTTCS-STTSBSH-HHHBCCC---S-------EETT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC---cccCC-CCccccC-cccccch---h-------hhcc
Confidence 47999999999999999999999999999999999999987 57996 5778887 8888620 1 2233
Q ss_pred hhhhc-CCCCccc-CCCCCCcEEEEEeecCCCCCCceeeccccccc------ccCcCEEEEeccccccccccCCcccHHH
Q 008917 233 NTLKN-NNNKISV-STEQLPSHLYLYLSHDYSHHDKLFFCDQDQIV------LRNIPWLIIKSDVYFLPSLFLMPSFEEE 304 (549)
Q Consensus 233 ~~l~~-~~~~~~~-~~~~~p~~~yl~L~h~~~~~D~~FFCd~~Q~~------L~~vpWLi~~Sd~YFvP~LFl~P~f~~e 304 (549)
+++.. +.++... ....+|+ +|.++. .+.++|++.|-+ ...+.|....++.|++|++++.+.|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~ 139 (330)
T 2hhc_A 67 VPVICDDRVNQLSFPGPFFPR-WWNRPS------IDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEE 139 (330)
T ss_dssp EEEECSGGGGTCCCCSSEESG-GGGSCG------GGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHH
T ss_pred cceecccccccccCCCCcCch-hhhccc------cccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhh
Confidence 33221 1111110 0111222 222221 136788766543 2224454445568999999999998887
Q ss_pred HhhcCCCccchhhhhcccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCCCch--------HHHHHHHHHHHhh
Q 008917 305 LSKLFPDKETVFHHLGRYLFHPSNQVWTLITSYYKKYLAEAEERIGIQIRIFDKKTSPF--------QQVMDQILTCTFK 376 (549)
Q Consensus 305 L~~lFP~kd~VFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~~p~--------~~v~~qIl~Ct~~ 376 (549)
. ++.+| ||| +|++++|+.|++|+++++++ +..||||||.++...... ...++++.+|+.+
T Consensus 140 ~------~~~i~----~yl-~p~~~i~~~i~~~~~~~~~~-~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~ 207 (330)
T 2hhc_A 140 A------ERLIF----RNI-KLRSEIRARIDALYEEHFSG-HSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRK 207 (330)
T ss_dssp H------HHHHH----HHS-CBCHHHHHHHHHHHHHHTTT-SEEEEEEECC------------CHHHHHHHHHHHHHHHH
T ss_pred h------HHHHH----hcC-CccHHHHHHHHHHHHHhccC-CceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHH
Confidence 3 34444 998 99999999999999999885 789999999998543221 1237899999999
Q ss_pred ccCCCCcCCCCcccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEe-cCCcchhhcccchhhhHHHHHHH
Q 008917 377 EKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVY-QPSHEEKQRSTNNVHNQKALAEI 455 (549)
Q Consensus 377 e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~-qPShEe~Q~~~~~~h~~kAlaEm 455 (549)
.+.+++. +.++|||+|+.++|.+++|++|++..+.+++.+... ++.|.. ..+..+.++|++||
T Consensus 208 ~~~~~~~-------------~~~~vfvaSDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~Dm 271 (330)
T 2hhc_A 208 AKALSYP-------------KPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHSA---EMGIEGGASALIDM 271 (330)
T ss_dssp HHTSCCS-------------SCEEEEEEESCHHHHHHHHHHSTTEECCCC-----------CH---HHHHHHHHHHHHHH
T ss_pred HHhccCc-------------CceEEEEEeCCHHHHHHHHHHcCCcccccceeecccccccccC---chhhccchHHHHHH
Confidence 8877642 457999999999999999999998666555432111 222221 12355789999999
Q ss_pred HHhccCCcee-ecCCCchhHHHhhhcCC
Q 008917 456 NLLSMMDVLV-TSARSTFGYVAQGLAGK 482 (549)
Q Consensus 456 yLLS~sD~LV-tS~~STFGYVAqgLgGl 482 (549)
||||.||.+| |+++||||++|+-|+.-
T Consensus 272 ~LLS~cd~~I~~~~~STFs~~aa~l~~~ 299 (330)
T 2hhc_A 272 YLLARCATVIRFPPTSAFTRYARLLVPR 299 (330)
T ss_dssp HHHTTCSEEEEESTTCGGGHHHHHHCSE
T ss_pred HHHHcCCeeEECCCCCCHHHHHHHhCCc
Confidence 9999999999 98899999999977643
No 2
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=99.58 E-value=4.6e-14 Score=153.15 Aligned_cols=204 Identities=18% Similarity=0.153 Sum_probs=123.6
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCC-----CchHHHHHHH---HHHHhhccCCCCcCCC
Q 008917 315 VFHHLGRYLFHPSNQVWTLITSYYKKYLAEAEERIGIQIRIFDKKT-----SPFQQVMDQI---LTCTFKEKLLPQVDMG 386 (549)
Q Consensus 315 VFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~-----~p~~~v~~qI---l~Ct~~e~lLPev~~~ 386 (549)
.+.++.||||.|++.+...|.++++.. .-....||||||..|..+ .|.++.++.+ ++...++
T Consensus 265 ~~~q~~~yl~rP~~~i~~~I~~~~~~l-~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~--------- 334 (526)
T 2de0_X 265 WVSQFVKYLIRPQPWLEKEIEEATKKL-GFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARR--------- 334 (526)
T ss_dssp HHHHHHHHHTCBCHHHHHHHHHHHHHH-TCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhh---------
Confidence 478899999999999999999999884 124678999999987621 3445555443 2222211
Q ss_pred CcccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCceee
Q 008917 387 KSIVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVT 466 (549)
Q Consensus 387 ~~~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVt 466 (549)
...+.+.|||+|+.++.++.++++|.+..-. +... + .-+.....+.. ...-..+++||||||-||.+|.
T Consensus 335 -------~~~~~~~ifLATDDp~v~~e~k~~~p~~~~~-~d~~-~-~~~a~~~~R~s-~~~l~~~l~DL~lLs~cd~~Vg 403 (526)
T 2de0_X 335 -------MQVDKKRVYLATDDPSLLKEAKTKYPNYEFI-SDNS-I-SWSAGLHNRYT-ENSLRGVILDIHFLSQADFLVC 403 (526)
T ss_dssp -------SCCSSCEEEEEESCHHHHHHHHHHCTTSEEE-CCCC-S-SCSSGGGGGTC-CTHHHHHHHHHHHHHHSSEEEE
T ss_pred -------cCCCCCeEEEEcCCHHHHHHHHHhCCCCEEe-cCcc-c-ccccCcccccc-HHHHHHHHHHHHHHhcCCeeec
Confidence 1234579999999999999999988665211 1110 0 11111112221 1223689999999999999999
Q ss_pred cCCCchhHHHhhhcCCCceEeeccCCCCCCCCCcccCCCCCCCCCCCCCcccCcCcC----CCcccccccccccCCccc-
Q 008917 467 SARSTFGYVAQGLAGKKPLILYKIEDKKIPNPVCGRAVSLEPCFHSPPIYDCKAKRE----VDTATIVPYLRHCEDIHW- 541 (549)
Q Consensus 467 S~~STFGYVAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~ydC~~k~~----~d~~~~~p~vr~CeD~~~- 541 (549)
|..|||+.+|..+.+-..-.- ........+....-+++.+.| .+ -|+-.+... -..|.++--+..|+|-+|
T Consensus 404 t~sS~~srla~~l~~~~~~~~-~~~~~SLD~~~~~~Gq~~~~~--~a-ly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~ 479 (526)
T 2de0_X 404 TFSSQVCRVAYEIMQTLHPDA-SANFHSLDDIYYFGGQNAHNQ--IA-IYAHQPRTADEIPMEPGDIIGVAGNHWDGYSK 479 (526)
T ss_dssp CTTSHHHHHHHHHHTTSSSCC-TTCEEESSCCSCCTTCCCCEE--EE-CSCBCCSSTTBCCBCTTCEEEEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHhcCcCccc-cccccCCccccccccccccce--EE-eecCCCCCCCcCCcCCCCEEEEccccCCCeeE
Confidence 999999999999887654110 000001122333333332221 11 244433321 245555555677877766
Q ss_pred cc
Q 008917 542 GI 543 (549)
Q Consensus 542 Gl 543 (549)
|-
T Consensus 480 G~ 481 (526)
T 2de0_X 480 GV 481 (526)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 3
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=97.77 E-value=0.0001 Score=76.82 Aligned_cols=145 Identities=15% Similarity=0.210 Sum_probs=92.0
Q ss_pred CCCccchhhhhcccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEe-cCC-------CCchHHHHHHHHHHH--hhcc
Q 008917 309 FPDKETVFHHLGRYLFHPSNQVWTLITSYYKKYLAEAEERIGIQIRIF-DKK-------TSPFQQVMDQILTCT--FKEK 378 (549)
Q Consensus 309 FP~kd~VFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf-~~~-------~~p~~~v~~qIl~Ct--~~e~ 378 (549)
||-++ --.+|.|| +..++++-...++|-+++|.+ .=|||++|.. |++ .+..++.+.+ -+|. ..++
T Consensus 178 FPv~~-e~r~LqkY-m~WS~~i~~~a~~fI~~~L~r--pyVgIHLR~G~DW~~aC~hlk~~~~~~lfaS-PQC~Gy~~~~ 252 (362)
T 3zy2_A 178 FPSKG-KVWSIQKY-LRWSSRITEQAKKFISANLAK--PFVAVHLRNDADWVRVCEHIDTTTNRPLFAS-EQCLGEGHHL 252 (362)
T ss_dssp SSCCG-GGGGGGGG-CCBCHHHHHHHHHHHHHHCCS--SEEEEEECCCHHHHHHHHTCCTTTCCCCTTT-HHHHCGGGTT
T ss_pred CCcCh-hhHhHHHh-ccccHHHHHHHHHHHHHhcCC--CeEEEEEecCCcHHHHHhhhccccCcccccC-CcccCCcccC
Confidence 44443 35678888 899999999999999999995 7899999985 211 0000001100 1233 1111
Q ss_pred C-------CCCcCCCCccc-CCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEE-ecCCcchhhcccchhhhH
Q 008917 379 L-------LPQVDMGKSIV-APSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINV-YQPSHEEKQRSTNNVHNQ 449 (549)
Q Consensus 379 l-------LPev~~~~~~~-~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V-~qPShEe~Q~~~~~~h~~ 449 (549)
. +|.++...... ...+..+.++|+|+|+...+.|+|++.+.... +..| ++|.
T Consensus 253 ~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~~~~ELk~~L~~~~-----v~vv~~~pe-------------- 313 (362)
T 3zy2_A 253 GTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYE-----IEAHRQEPD-------------- 313 (362)
T ss_dssp CCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCCCHHHHHHHHGGGT-----CCEECCSSC--------------
T ss_pred cccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHhhccC-----ceEEEeCCc--------------
Confidence 1 23221100000 00112256899999999999999999884321 1112 2221
Q ss_pred HHHHHHHHhccCCceeecCCCchhHHHh
Q 008917 450 KALAEINLLSMMDVLVTSARSTFGYVAQ 477 (549)
Q Consensus 450 kAlaEmyLLS~sD~LVtS~~STFGYVAq 477 (549)
.|.+|||+|+.+|+.|-+..|||.+-.+
T Consensus 314 ~a~ID~~I~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 314 DMYTSLAIMGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp CHHHHHHHHHHSSEEEECTTCHHHHHHH
T ss_pred hhHHHHHHHHhCCEeecCccccccHHHH
Confidence 7899999999999999999999998653
No 4
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=96.96 E-value=0.011 Score=61.55 Aligned_cols=128 Identities=14% Similarity=0.214 Sum_probs=80.1
Q ss_pred hhcccccCCchhHHHHHHHHHHHhhhccc------------------------ceeeEEEEEecCCC-----C-chHHHH
Q 008917 318 HLGRYLFHPSNQVWTLITSYYKKYLAEAE------------------------ERIGIQIRIFDKKT-----S-PFQQVM 367 (549)
Q Consensus 318 hL~RYLfhPsN~VW~~Vtrfy~ayLa~A~------------------------~rIGIQIRvf~~~~-----~-p~~~v~ 367 (549)
.+-||| .=++.+-....+|-+.+|..++ .=+++++|.-+... . +.+.+.
T Consensus 214 ~~~r~l-~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps~~~~~ 292 (408)
T 4ap5_A 214 DTRRSM-VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAV 292 (408)
T ss_dssp HHHHTC-CBCHHHHHHHHHHHHHHHCCCTTTTTCCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCCHHHHH
T ss_pred hHHHHh-hhhHHHHHHHHHHHHHHhCcccceeecccchhHhhhhcccccccCCCccccccccccchhhhhccCCCHHHHH
Confidence 344443 3355566666777777764321 23788999765431 1 234455
Q ss_pred HHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEeccChhH-HHHHHHHhccCCCCCccEEEEecCCcchhhcccchh
Q 008917 368 DQILTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSY-YEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNV 446 (549)
Q Consensus 368 ~qIl~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y-~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~ 446 (549)
++|..-..+. +.+.|+|||+.... .+.|++.... +..+.|..++....++
T Consensus 293 ~~i~~~~~~~-------------------~~~~VyiATD~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~d-- 343 (408)
T 4ap5_A 293 RKIRSLMKTH-------------------RLDKVFVATDAVRKEYEELKKLLPE--------MVRFEPTWEELELYKD-- 343 (408)
T ss_dssp HHHHHHHHHH-------------------TCSCEEEEECCCHHHHHHHHHHCTT--------EECCCCCHHHHHHHHH--
T ss_pred HHHHHHHHhc-------------------CCCEEEEeCCCchhHHHHHHHhCCC--------cEEecCcchhhhccCc--
Confidence 5554444332 23589999996543 6778776522 3345666655443322
Q ss_pred hhHHHHHHHHHhccCCceeecCCCchhHHH
Q 008917 447 HNQKALAEINLLSMMDVLVTSARSTFGYVA 476 (549)
Q Consensus 447 h~~kAlaEmyLLS~sD~LVtS~~STFGYVA 476 (549)
+.-|++|+++++.+|+.|-|..|||-.--
T Consensus 344 -~~~a~idq~Ic~~a~~FiGt~~StfS~~I 372 (408)
T 4ap5_A 344 -GGVAIIDQWICAHARFFIGTSVSTFSFRI 372 (408)
T ss_dssp -HHHHHHHHHHHHTEEEEEBCTTCHHHHHH
T ss_pred -chhhHHHHHHHHhCCeeEeCCcCchhHHH
Confidence 24599999999999999999999998653
No 5
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.22 E-value=1.6e+02 Score=23.19 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=43.8
Q ss_pred CcceEEEEeccChhH-HHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHH
Q 008917 396 GKSKAVLLTSLIPSY-YEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEI 455 (549)
Q Consensus 396 ~k~kaVlVtSL~~~y-~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEm 455 (549)
...+.|+|..|.... -+.|++.|.+... |++..|..+.+-..-.|.+....++|+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKAL 71 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHh
Confidence 346799999997643 4678888876643 888888887776666777887888888877
No 6
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=18.23 E-value=4.5e+02 Score=25.11 Aligned_cols=121 Identities=12% Similarity=-0.022 Sum_probs=73.0
Q ss_pred ecCCCCchHHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCC
Q 008917 356 FDKKTSPFQQVMDQILTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPS 435 (549)
Q Consensus 356 f~~~~~p~~~v~~qIl~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPS 435 (549)
++..+.-.++.-+.|++.+.+-+--|+..... ...+..+.++|++.++...|+..+.+-..+.....|=.+.+...
T Consensus 31 Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~---l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~- 106 (344)
T 3kjx_A 31 LRNRGDVSDATRARVLAAAKELGYVPNKIAGA---LASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT- 106 (344)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSC---STTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHH---hhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-
Confidence 33333334666788999999988888653221 12344567899998888778777766655555555655545432
Q ss_pred cchhhcccchhhhHHHHHHHHHhccCCceeecCCCch-hHHHhhh-cCCCceEee
Q 008917 436 HEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARSTF-GYVAQGL-AGKKPLILY 488 (549)
Q Consensus 436 hEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STF-GYVAqgL-gGl~PwiL~ 488 (549)
+.. ...+....+..+-.-.|.+|..+...- -.+..-. .| .|.|+.
T Consensus 107 ~~~-------~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~-iPvV~i 153 (344)
T 3kjx_A 107 DYL-------PEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAG-IPVVEI 153 (344)
T ss_dssp TTC-------HHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCS-SCEEEE
T ss_pred CCC-------HHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCC-CCEEEE
Confidence 221 123456667766678899998765422 2332222 24 488776
No 7
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=16.30 E-value=2.2e+02 Score=24.82 Aligned_cols=56 Identities=7% Similarity=0.025 Sum_probs=36.2
Q ss_pred cceEEEEe-------ccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHH
Q 008917 397 KSKAVLLT-------SLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEI 455 (549)
Q Consensus 397 k~kaVlVt-------SL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEm 455 (549)
...||-++ +|..++-++|...+..+.|.+|++|-.- .++..|..++...++=|.++
T Consensus 40 v~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~---q~~RSQ~~Nr~~Al~rL~~~ 102 (112)
T 1j26_A 40 VNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTS---ESSRYQFRNLAECLQKIRDM 102 (112)
T ss_dssp CCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEE---CCCSSHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEE---CCccCHHHHHHHHHHHHHHH
Confidence 35667664 6888999999999999999999765442 33333333443344444444
No 8
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=14.19 E-value=1.9e+02 Score=22.79 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=39.7
Q ss_pred CcceEEEEeccCh--hHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHH
Q 008917 396 GKSKAVLLTSLIP--SYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEI 455 (549)
Q Consensus 396 ~k~kaVlVtSL~~--~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEm 455 (549)
...+.|+|..|.. .=-+.|++.|... |++..|.-+.+-..-.|.+....++|+.+|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~A~~~l 65 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIKNAFGFIQFDNPQSVRDAIECE 65 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 3457899998875 4567788888665 556666656665666677877788888876
No 9
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=13.77 E-value=2.6e+02 Score=26.69 Aligned_cols=114 Identities=10% Similarity=0.153 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEec--cChhHHHHHHHHhccCCCCCccEEEEecCCcchhhc
Q 008917 364 QQVMDQILTCTFKEKLLPQVDMGKSIVAPSGKGKSKAVLLTS--LIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQR 441 (549)
Q Consensus 364 ~~v~~qIl~Ct~~e~lLPev~~~~~~~~~~~~~k~kaVlVtS--L~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~ 441 (549)
++.-+.|++.+.+-+--|+..... ...+..+.++|++.+ +...|+..+.+-..+.....|-.+.++. ++..
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~a~~---l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~--- 104 (338)
T 3dbi_A 32 QETKDRVFQAVEESGYRPNLLARN---LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHS--- 104 (338)
T ss_dssp -------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTS---
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHH---hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCC---
Confidence 344456666676666666542211 123445678999988 7777877776655555555565555544 2211
Q ss_pred ccchhhhHHHHHHHHHhccCCceeecCCCc-hhHHHhhh--cCCCceEeec
Q 008917 442 STNNVHNQKALAEINLLSMMDVLVTSARST-FGYVAQGL--AGKKPLILYK 489 (549)
Q Consensus 442 ~~~~~h~~kAlaEmyLLS~sD~LVtS~~ST-FGYVAqgL--gGl~PwiL~~ 489 (549)
...+....+..+-.-.|.+|..+... ---+..-+ .| .|.|+..
T Consensus 105 ----~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-iPvV~~~ 150 (338)
T 3dbi_A 105 ----AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHS-QPIMVLN 150 (338)
T ss_dssp ----HHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCS-SCEEEES
T ss_pred ----hHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCC-CCEEEEc
Confidence 12355567777777899999877542 22222222 23 4887753
No 10
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Probab=13.74 E-value=1.8e+02 Score=24.73 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=39.5
Q ss_pred CcCEEEEe-ccccccccccCCcccHHHHhhcCCCccch-hhhhcccccCCc--hhHHHHHHHHHHHhhh
Q 008917 279 NIPWLIIK-SDVYFLPSLFLMPSFEEELSKLFPDKETV-FHHLGRYLFHPS--NQVWTLITSYYKKYLA 343 (549)
Q Consensus 279 ~vpWLi~~-Sd~YFvP~LFl~P~f~~eL~~lFP~kd~V-FhhL~RYLfhPs--N~VW~~Vtrfy~ayLa 343 (549)
++|.+++. .++.++| +...+.+.++.++.+.+ +...++.+..|. ++++..|.+|.+.+|+
T Consensus 160 ~~P~l~i~g~~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 160 KAPTLLIVGGYDLPVI-----AMNEDALEQLQTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp CSCEEEEEETTCHHHH-----HHHHHHHHHCCSSEEEEEETTCCTTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEccccCCCC-----HHHHHHHHhhCCCeEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcC
Confidence 35666665 3455555 45567777777776533 444567765654 7899999999888763
Done!