Query 008917
Match_columns 549
No_of_seqs 137 out of 162
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 14:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008917.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008917hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cpda1 d.58.7.1 (A:223-308) A 27.0 52 0.0038 24.1 5.5 58 397-456 7-65 (86)
2 d1tjya_ c.93.1.1 (A:) AI-2 rec 26.3 31 0.0023 29.8 4.7 72 395-473 2-73 (316)
3 d1ihua1 c.37.1.10 (A:1-296) Ar 25.7 39 0.0029 29.5 5.4 46 155-200 8-55 (296)
4 d2bz2a1 d.58.7.1 (A:35-113) Ne 20.7 95 0.0069 22.3 5.9 66 396-464 3-68 (79)
5 d1prtb2 d.169.1.2 (B:4-89) Per 18.3 7.1 0.00052 30.3 -1.3 19 464-482 44-67 (86)
6 d1f8ya_ c.23.14.1 (A:) Nucleos 16.7 58 0.0042 27.4 4.2 91 399-491 3-114 (156)
7 d1prtc2 d.169.1.2 (C:4-89) Per 16.2 7.1 0.00052 30.3 -1.8 19 464-482 44-67 (86)
8 d2fvya1 c.93.1.1 (A:2-306) Gal 14.0 1.1E+02 0.0079 26.0 5.5 71 397-475 2-73 (305)
9 d1guda_ c.93.1.1 (A:) D-allose 12.2 81 0.0059 26.9 4.0 85 399-489 4-91 (288)
10 d1wwha1 d.58.7.1 (A:169-249) N 12.2 1.6E+02 0.012 21.6 5.3 51 399-453 5-57 (81)
No 1
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.98 E-value=52 Score=24.11 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=45.3
Q ss_pred cceEEEEeccCh-hHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHH
Q 008917 397 KSKAVLLTSLIP-SYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEIN 456 (549)
Q Consensus 397 k~kaVlVtSL~~-~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmy 456 (549)
+.+.|+|..|.. .--+.|+++|.+.. .++++.+..+.+-..-.+.+....++|+..|-
T Consensus 7 ~~k~l~V~nLp~~~te~~l~~~F~~~g--~i~~~~~~~~rg~afV~f~~~~~A~~Ai~~l~ 65 (86)
T d2cpda1 7 SVKILYVRNLMLSTSEEMIEKEFNNIK--PGAVERVKKIRDYAFVHFSNREDAVEAMKALN 65 (86)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTS--TTCEEEEEECSSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHhhcccc--eeeeEEEccccEEEEEEeCCHHHHHHHHHHcC
Confidence 457899999987 44577889987765 35678888888888888888888899988874
No 2
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=26.26 E-value=31 Score=29.75 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=51.2
Q ss_pred CCcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCceeecCCCchh
Q 008917 395 KGKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARSTFG 473 (549)
Q Consensus 395 ~~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFG 473 (549)
+.+.+++++.++.-.|+..+.+--.+....-|=-+.+..|+... ...|.+..|..+-.-.|.+|+++.++=+
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d-------~~~q~~~i~~~i~~~~dgIIi~~~~~~~ 73 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPS-------VSGQVQLVNNFVNQGYDAIIVSAVSPDG 73 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCC-------HHHHHHHHHHHHHTTCSEEEECCSSSST
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-------HHHHHHHHHHHHhcCCCeeeecccccch
Confidence 45778999999999999988776666555556334444565432 2346788888888899999998876533
No 3
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=25.71 E-value=39 Score=29.48 Aligned_cols=46 Identities=28% Similarity=0.483 Sum_probs=37.9
Q ss_pred ceEEEEeccCCcchhHHHHHHHHHHHHHhCcEeeeecC--CCcccccc
Q 008917 155 CRYVVWVAKCGLGNRMLSITSAFLYALLTNRVLLIYEE--ADMANVFC 200 (549)
Q Consensus 155 CkYvVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~--~d~~~LFC 200 (549)
-||+++..-.|-|==-+|.+-|..+|-.=.||||||-. ..++++|-
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l~~~lg 55 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFS 55 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTT
T ss_pred CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHhC
Confidence 58999988999999999999999999988999999854 33444554
No 4
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.66 E-value=95 Score=22.30 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=42.7
Q ss_pred CcceEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCce
Q 008917 396 GKSKAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVL 464 (549)
Q Consensus 396 ~k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~L 464 (549)
.+.+.|+|..+. ---|.|++.|.+...... |.+..+.+-..-.+.+....++|+.+|-=..+.+.-
T Consensus 3 ~~~~ti~V~~~~-~te~~L~~~F~~~G~I~~--v~~~~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~ 68 (79)
T d2bz2a1 3 RKGNTLYVYGED-MTPTLLRGAFSPFGNIID--LSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 68 (79)
T ss_dssp CCCCEEEEECSS-CCHHHHHHHHSTTCCCSC--EEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEECCC-CCHHHHHHHHhccCccce--eeeccCCCEEEEEEcccHHHHHHHHHhCCCEECCEE
Confidence 445689999985 457899999977754322 333344444555667777788999887544444433
No 5
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=18.34 E-value=7.1 Score=30.35 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.0
Q ss_pred eeecCCCchh-----HHHhhhcCC
Q 008917 464 LVTSARSTFG-----YVAQGLAGK 482 (549)
Q Consensus 464 LVtS~~STFG-----YVAqgLgGl 482 (549)
-||-+||-|| |++|.+||+
T Consensus 44 ~it~gwsi~~lydgtylg~~yggi 67 (86)
T d1prtb2 44 HVTRGWSIFALYDGTYLGGEYGGV 67 (86)
T ss_dssp TTCCSSCEEECSSEEEECGGGCSE
T ss_pred hcCCCceEEEEeccceeccccCce
Confidence 4799999998 789999996
No 6
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}
Probab=16.68 E-value=58 Score=27.39 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=60.0
Q ss_pred eEEEEeccC-----hhHHHHHHHHhccCCCCCccEEEEecCCcchhhccc----------chhhhHHHHHHHHHhccCCc
Q 008917 399 KAVLLTSLI-----PSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRST----------NNVHNQKALAEINLLSMMDV 463 (549)
Q Consensus 399 kaVlVtSL~-----~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~----------~~~h~~kAlaEmyLLS~sD~ 463 (549)
|.|++++=- .++.+++++..-+++|..|. .||.|-........ .....+-.-+|+-.+.-||+
T Consensus 3 k~IYlAgP~F~~~q~~~~~~~~~~L~~~~~~~~~--~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD~ 80 (156)
T d1f8ya_ 3 KTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLE--NSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDI 80 (156)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHCTTBCCT--TSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHhccccCCc--eEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence 678888742 68889999999998888775 45777432111111 01112334578999999999
Q ss_pred eee--cC----CCchhHHHhhhcCCCceEeeccC
Q 008917 464 LVT--SA----RSTFGYVAQGLAGKKPLILYKIE 491 (549)
Q Consensus 464 LVt--S~----~STFGYVAqgLgGl~PwiL~~~~ 491 (549)
+|. .+ +-|--=+|-+.|==||.|++...
T Consensus 81 via~ldg~~~D~Gta~EiG~A~a~gKpvi~~~~~ 114 (156)
T d1f8ya_ 81 MLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPD 114 (156)
T ss_dssp EEEECCGGGCCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Confidence 875 32 34555567777777999998664
No 7
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=16.22 E-value=7.1 Score=30.35 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=16.7
Q ss_pred eeecCCCchh-----HHHhhhcCC
Q 008917 464 LVTSARSTFG-----YVAQGLAGK 482 (549)
Q Consensus 464 LVtS~~STFG-----YVAqgLgGl 482 (549)
-||-+||-|| |++|.+||+
T Consensus 44 ~it~gwsi~~lydgtylg~~yggi 67 (86)
T d1prtc2 44 QITPGWSIYGLYDGTYLGQAYGGI 67 (86)
T ss_dssp HHCCTTCEEECSSSEEECTTTTSE
T ss_pred hcCCCceEEEEeccceeccccCce
Confidence 4799999998 789999996
No 8
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=14.05 E-value=1.1e+02 Score=26.02 Aligned_cols=71 Identities=7% Similarity=0.029 Sum_probs=48.0
Q ss_pred cceEEEEeccChhHHHHHHHHhccCCCCC-ccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCceeecCCCchhHH
Q 008917 397 KSKAVLLTSLIPSYYEKLKDMYLKHPTLN-GEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARSTFGYV 475 (549)
Q Consensus 397 k~kaVlVtSL~~~y~e~lk~~Y~~~~T~~-Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYV 475 (549)
.+++|+|..+...|+..+++---+..... |-.+.+.. +.. ....|.+.+|..+-+-.|.+|..+.++=...
T Consensus 2 ~kIgv~~~~~~~~f~~~i~~gi~~~a~~~~~~~l~~~~-~~~-------~~~~q~~~i~~li~~~vDgiii~~~~~~~~~ 73 (305)
T d2fvya1 2 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND-SQN-------DQSKQNDQIDVLLAKGVKALAINLVDPAAAG 73 (305)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE-CTT-------CHHHHHHHHHHHHHTTCSEEEECCSSGGGHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc-CCC-------CHHHHHHHHHHHHHcCCCEEEeecccccccH
Confidence 35799999999999988877654444333 32333332 321 2234677888888889999999998875444
No 9
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=12.20 E-value=81 Score=26.92 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=57.1
Q ss_pred eEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcchhhcccchhhhHHHHHHHHHhccCCceeecCCCch---hHH
Q 008917 399 KAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHEEKQRSTNNVHNQKALAEINLLSMMDVLVTSARSTF---GYV 475 (549)
Q Consensus 399 kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STF---GYV 475 (549)
-||+|.++.-.|++.+.+-..+....-|-.+.++....++ ....+.+..|..+-+-.|.+|+++.+.- ..+
T Consensus 4 ~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~------d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l 77 (288)
T d1guda_ 4 YAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG------DFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPV 77 (288)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTT------CHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC------CHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHH
Confidence 4999999999999999887766655556455555433321 1234678888888899999999987654 334
Q ss_pred HhhhcCCCceEeec
Q 008917 476 AQGLAGKKPLILYK 489 (549)
Q Consensus 476 AqgLgGl~PwiL~~ 489 (549)
.....-=.|.|.+.
T Consensus 78 ~~~~~~gipvv~~d 91 (288)
T d1guda_ 78 ARAWKKGIYLVNLD 91 (288)
T ss_dssp HHHHHTTCEEEEES
T ss_pred HHHHhCCCeEEEeC
Confidence 44433334776643
No 10
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.16 E-value=1.6e+02 Score=21.59 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=38.9
Q ss_pred eEEEEeccChhHHHHHHHHhccCCCCCccEEEEecCCcc--hhhcccchhhhHHHHH
Q 008917 399 KAVLLTSLIPSYYEKLKDMYLKHPTLNGEVINVYQPSHE--EKQRSTNNVHNQKALA 453 (549)
Q Consensus 399 kaVlVtSL~~~y~e~lk~~Y~~~~T~~Ge~V~V~qPShE--e~Q~~~~~~h~~kAla 453 (549)
..|+|..+.++-.|.+.+.|.+. |+++.+.-+... .+-++.+....++||.
T Consensus 5 ~wV~V~G~p~~~~~~il~~F~~~----G~I~~~~~~~~~~~~fV~f~~~~~A~~Al~ 57 (81)
T d1wwha1 5 TWVTVFGFPQASASYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKALS 57 (81)
T ss_dssp GEEEEECCCGGGHHHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHHT
T ss_pred cEEEEECCChHHHHHHHHHHHhh----hhhheEEecCCCCEEEEEEcccHHHHHHHh
Confidence 57999999998888888888554 778888766544 4455778888888873
Done!