Query 008918
Match_columns 549
No_of_seqs 89 out of 105
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 18:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05918 API5: Apoptosis inhib 100.0 3E-163 6E-168 1319.3 38.3 533 10-549 1-556 (556)
2 KOG2213 Apoptosis inhibitor 5/ 100.0 9E-118 2E-122 916.5 37.5 423 9-464 2-430 (460)
3 KOG2213 Apoptosis inhibitor 5/ 98.9 7.4E-10 1.6E-14 116.8 4.3 73 381-476 328-400 (460)
4 PF05918 API5: Apoptosis inhib 98.9 2.1E-06 4.5E-11 95.5 29.1 377 30-464 57-463 (556)
5 PF01602 Adaptin_N: Adaptin N 98.0 0.0011 2.3E-08 71.9 21.9 127 40-170 88-218 (526)
6 PF10508 Proteasom_PSMB: Prote 97.8 0.013 2.8E-07 65.0 27.6 339 9-368 53-431 (503)
7 PF12717 Cnd1: non-SMC mitotic 97.7 0.0015 3.2E-08 62.5 15.6 162 46-215 3-176 (178)
8 PTZ00429 beta-adaptin; Provisi 97.6 0.029 6.3E-07 65.3 27.4 103 34-138 70-173 (746)
9 PF01602 Adaptin_N: Adaptin N 96.8 0.091 2E-06 57.1 19.5 133 32-170 42-178 (526)
10 PF13646 HEAT_2: HEAT repeats; 96.5 0.013 2.9E-07 48.2 7.6 76 42-129 11-87 (88)
11 PF10363 DUF2435: Protein of u 96.3 0.016 3.5E-07 50.7 7.4 83 67-149 2-87 (92)
12 KOG1061 Vesicle coat complex A 96.2 0.11 2.3E-06 60.0 15.3 62 34-95 51-113 (734)
13 cd00020 ARM Armadillo/beta-cat 96.1 0.022 4.7E-07 48.5 7.4 98 67-169 6-116 (120)
14 PF12717 Cnd1: non-SMC mitotic 96.1 0.072 1.6E-06 51.0 11.4 89 81-174 1-93 (178)
15 PRK09687 putative lyase; Provi 96.1 0.072 1.6E-06 55.0 12.0 100 30-130 52-153 (280)
16 PRK09687 putative lyase; Provi 96.0 0.31 6.8E-06 50.4 16.7 125 33-169 91-217 (280)
17 KOG1020 Sister chromatid cohes 96.0 0.5 1.1E-05 58.3 20.1 106 29-135 852-961 (1692)
18 PF13646 HEAT_2: HEAT repeats; 96.0 0.028 6.2E-07 46.2 7.2 84 70-166 1-85 (88)
19 PTZ00429 beta-adaptin; Provisi 96.0 2.1 4.6E-05 50.3 24.8 124 40-170 114-245 (746)
20 KOG2274 Predicted importin 9 [ 95.9 1 2.2E-05 53.2 21.4 91 50-140 469-565 (1005)
21 KOG3973 Uncharacterized conser 95.9 0.082 1.8E-06 56.2 11.5 26 523-548 356-384 (465)
22 cd00020 ARM Armadillo/beta-cat 95.4 0.066 1.4E-06 45.5 7.4 91 42-132 18-118 (120)
23 PLN03200 cellulose synthase-in 94.8 1.2 2.6E-05 57.2 18.6 294 34-359 448-767 (2102)
24 KOG0921 Dosage compensation co 94.4 0.046 1E-06 64.1 4.9 20 351-372 1028-1048(1282)
25 KOG2171 Karyopherin (importin) 94.4 1.3 2.9E-05 53.3 16.8 140 30-170 116-275 (1075)
26 KOG1058 Vesicle coat complex C 94.3 2.4 5.1E-05 49.6 17.9 246 62-362 128-394 (948)
27 PRK13800 putative oxidoreducta 93.2 1.5 3.2E-05 52.3 14.6 79 43-132 633-711 (897)
28 PF12348 CLASP_N: CLASP N term 92.2 1.7 3.7E-05 42.4 11.3 162 29-204 23-192 (228)
29 PRK13800 putative oxidoreducta 92.2 0.51 1.1E-05 56.2 9.0 92 66-170 619-710 (897)
30 PLN03200 cellulose synthase-in 91.7 2.7 5.9E-05 54.2 14.8 130 33-167 610-758 (2102)
31 KOG0921 Dosage compensation co 91.1 0.28 6E-06 58.0 5.0 23 59-81 675-697 (1282)
32 KOG2256 Predicted protein invo 90.7 17 0.00036 42.1 18.4 300 55-476 269-616 (661)
33 PF02985 HEAT: HEAT repeat; I 90.2 0.15 3.3E-06 35.4 1.3 28 70-97 2-29 (31)
34 KOG3973 Uncharacterized conser 90.0 0.34 7.4E-06 51.7 4.1 8 469-476 319-326 (465)
35 PF13513 HEAT_EZ: HEAT-like re 89.5 0.57 1.2E-05 35.9 4.2 49 82-130 1-53 (55)
36 KOG2973 Uncharacterized conser 89.4 5.4 0.00012 42.6 12.4 67 303-371 221-290 (353)
37 PF14500 MMS19_N: Dos2-interac 89.4 28 0.00062 35.9 19.1 227 78-326 9-255 (262)
38 KOG0212 Uncharacterized conser 89.4 24 0.00052 40.5 17.9 162 11-180 105-286 (675)
39 COG5096 Vesicle coat complex, 89.2 16 0.00034 43.3 17.1 108 34-143 57-165 (757)
40 PF13001 Ecm29: Proteasome sta 88.8 3.4 7.4E-05 46.2 11.2 131 5-135 268-444 (501)
41 KOG3172 Small nuclear ribonucl 88.7 0.33 7.2E-06 43.8 2.5 13 452-464 73-85 (119)
42 COG5096 Vesicle coat complex, 88.6 34 0.00075 40.5 19.3 107 40-149 82-210 (757)
43 PF12348 CLASP_N: CLASP N term 88.4 5.8 0.00013 38.6 11.3 92 45-137 67-163 (228)
44 PF01603 B56: Protein phosphat 87.9 14 0.00029 40.5 14.8 58 287-351 263-321 (409)
45 smart00638 LPD_N Lipoprotein N 87.4 6.7 0.00015 44.0 12.5 130 7-136 324-477 (574)
46 PF11698 V-ATPase_H_C: V-ATPas 87.4 0.64 1.4E-05 42.8 3.6 57 44-100 57-118 (119)
47 PF05804 KAP: Kinesin-associat 87.2 33 0.00071 40.5 18.1 134 207-360 468-611 (708)
48 KOG1061 Vesicle coat complex A 87.1 6.1 0.00013 46.2 11.9 158 79-258 361-521 (734)
49 PF10508 Proteasom_PSMB: Prote 86.6 60 0.0013 36.4 20.1 91 29-119 116-216 (503)
50 PF12755 Vac14_Fab1_bd: Vacuol 86.5 0.97 2.1E-05 39.9 4.2 71 63-134 22-96 (97)
51 cd06561 AlkD_like A new struct 86.2 4.1 8.9E-05 38.7 8.7 115 29-149 71-185 (197)
52 COG5181 HSH155 U2 snRNP splice 86.0 11 0.00024 43.7 12.9 261 67-348 603-908 (975)
53 TIGR00207 fliG flagellar motor 85.5 14 0.00031 39.4 13.1 157 9-167 55-241 (338)
54 PF04826 Arm_2: Armadillo-like 85.0 4.8 0.0001 41.4 9.0 130 34-169 17-159 (254)
55 PF08713 DNA_alkylation: DNA a 84.5 2.6 5.7E-05 40.6 6.5 80 67-148 119-198 (213)
56 PF13513 HEAT_EZ: HEAT-like re 84.4 1.3 2.9E-05 33.9 3.6 50 46-95 2-55 (55)
57 KOG2259 Uncharacterized conser 84.0 64 0.0014 37.9 17.8 235 71-326 376-622 (823)
58 KOG2956 CLIP-associating prote 84.0 16 0.00035 41.0 12.8 82 68-149 329-416 (516)
59 KOG2945 Predicted RNA-binding 83.9 0.62 1.3E-05 50.2 2.0 31 514-546 307-341 (365)
60 KOG2259 Uncharacterized conser 83.4 8.2 0.00018 44.8 10.5 72 52-125 182-254 (823)
61 smart00543 MIF4G Middle domain 82.6 40 0.00086 31.6 13.6 166 196-398 6-174 (200)
62 KOG1077 Vesicle coat complex A 81.1 23 0.00051 41.6 13.1 101 35-135 152-290 (938)
63 KOG3428 Small nuclear ribonucl 80.8 0.9 2E-05 41.1 1.6 16 531-547 94-109 (109)
64 PF07539 DRIM: Down-regulated 79.6 14 0.0003 34.9 9.1 128 58-214 2-138 (141)
65 PF01347 Vitellogenin_N: Lipop 79.5 11 0.00024 42.5 10.0 95 43-148 502-600 (618)
66 KOG2025 Chromosome condensatio 79.3 1E+02 0.0022 36.7 17.3 111 33-147 86-201 (892)
67 KOG2171 Karyopherin (importin) 79.2 24 0.00051 43.2 12.8 140 66-209 387-536 (1075)
68 KOG0213 Splicing factor 3b, su 79.1 1.1E+02 0.0023 36.8 17.4 282 29-347 756-1102(1172)
69 PF02854 MIF4G: MIF4G domain; 79.0 13 0.00029 34.6 9.0 168 195-400 5-185 (209)
70 PF14500 MMS19_N: Dos2-interac 78.2 22 0.00049 36.6 11.0 175 155-348 10-200 (262)
71 KOG2160 Armadillo/beta-catenin 77.8 51 0.0011 35.7 13.7 104 12-116 105-220 (342)
72 PF05823 Gp-FAR-1: Nematode fa 75.9 6.3 0.00014 37.6 5.8 132 185-322 5-152 (154)
73 PF01347 Vitellogenin_N: Lipop 75.6 60 0.0013 36.7 14.5 117 30-149 393-531 (618)
74 KOG3172 Small nuclear ribonucl 75.6 1.6 3.4E-05 39.5 1.6 9 535-543 104-112 (119)
75 KOG1059 Vesicle coat complex A 75.5 61 0.0013 38.4 14.2 35 274-308 331-365 (877)
76 KOG0116 RasGAP SH3 binding pro 74.8 4.8 0.0001 44.4 5.3 27 14-42 21-47 (419)
77 KOG1062 Vesicle coat complex A 74.5 86 0.0019 37.5 15.3 176 80-269 246-440 (866)
78 TIGR02270 conserved hypothetic 73.7 17 0.00036 40.0 9.2 86 69-169 87-172 (410)
79 KOG1943 Beta-tubulin folding c 73.5 29 0.00063 42.4 11.5 66 52-119 527-593 (1133)
80 PF08506 Cse1: Cse1; InterPro 73.3 40 0.00086 36.6 11.8 52 275-326 301-355 (370)
81 KOG0116 RasGAP SH3 binding pro 73.1 4.4 9.5E-05 44.7 4.5 10 529-538 396-405 (419)
82 PF04286 DUF445: Protein of un 71.1 97 0.0021 32.1 13.8 166 29-207 139-331 (367)
83 KOG1991 Nuclear transport rece 71.0 2.6E+02 0.0057 34.4 19.0 184 49-237 480-689 (1010)
84 PF12719 Cnd3: Nuclear condens 69.9 45 0.00097 34.5 10.9 62 77-138 36-97 (298)
85 PF14225 MOR2-PAG1_C: Cell mor 69.2 33 0.00071 35.6 9.6 119 12-131 130-254 (262)
86 PRK11634 ATP-dependent RNA hel 68.3 5.8 0.00013 45.7 4.3 55 47-110 83-140 (629)
87 KOG2025 Chromosome condensatio 67.4 2.5E+02 0.0054 33.7 16.7 132 40-175 52-195 (892)
88 PRK05686 fliG flagellar motor 67.4 89 0.0019 33.3 12.7 156 10-167 59-244 (339)
89 KOG1058 Vesicle coat complex C 67.3 2.2E+02 0.0047 34.3 16.3 68 49-117 224-291 (948)
90 cd07064 AlkD_like_1 A new stru 67.1 75 0.0016 31.5 11.4 108 34-147 85-192 (208)
91 KOG3293 Small nuclear ribonucl 66.9 7 0.00015 36.3 3.7 14 455-468 53-66 (134)
92 PRK11634 ATP-dependent RNA hel 66.5 7.5 0.00016 44.8 4.8 28 447-474 503-532 (629)
93 KOG0212 Uncharacterized conser 65.7 56 0.0012 37.7 11.1 213 16-238 189-427 (675)
94 KOG4653 Uncharacterized conser 65.6 77 0.0017 38.2 12.5 88 29-116 724-836 (982)
95 KOG3262 H/ACA small nucleolar 64.9 18 0.00039 36.0 6.3 6 542-547 208-213 (215)
96 PF10363 DUF2435: Protein of u 64.6 24 0.00053 30.9 6.6 82 32-116 3-88 (92)
97 smart00582 RPR domain present 64.4 19 0.00042 31.9 6.1 82 84-169 11-103 (121)
98 KOG1824 TATA-binding protein-i 64.0 80 0.0017 38.6 12.3 121 70-198 1009-1154(1233)
99 KOG2567 Uncharacterized conser 63.5 4.9 0.00011 39.1 2.1 24 451-476 70-93 (179)
100 PF12755 Vac14_Fab1_bd: Vacuol 62.8 18 0.00039 31.9 5.5 56 84-139 2-61 (97)
101 PF12243 CTK3: CTD kinase subu 62.6 42 0.00091 31.8 8.1 63 30-96 6-68 (139)
102 COG1413 FOG: HEAT repeat [Ener 61.2 25 0.00053 36.4 7.0 77 66-149 178-254 (335)
103 PF00514 Arm: Armadillo/beta-c 60.7 6.5 0.00014 28.5 1.9 31 67-97 11-41 (41)
104 COG5240 SEC21 Vesicle coat com 60.6 81 0.0018 36.7 11.1 117 50-169 283-408 (898)
105 KOG2137 Protein kinase [Signal 58.7 63 0.0014 38.0 10.2 128 182-328 342-476 (700)
106 PRK10590 ATP-dependent RNA hel 58.5 7.3 0.00016 42.6 2.7 16 59-74 21-36 (456)
107 COG5098 Chromosome condensatio 58.4 4E+02 0.0087 32.1 17.8 89 52-140 323-421 (1128)
108 smart00638 LPD_N Lipoprotein N 57.3 38 0.00082 38.1 8.2 53 82-139 494-547 (574)
109 KOG1949 Uncharacterized conser 57.0 9.6 0.00021 44.7 3.3 90 43-135 186-293 (1005)
110 KOG3080 Nucleolar protein-like 56.4 59 0.0013 34.6 8.7 18 396-413 171-190 (328)
111 PF12830 Nipped-B_C: Sister ch 56.1 1.8E+02 0.004 28.2 11.7 142 35-176 11-169 (187)
112 PF01465 GRIP: GRIP domain; I 56.0 14 0.0003 28.5 3.1 32 108-139 10-41 (46)
113 COG1413 FOG: HEAT repeat [Ener 54.9 2E+02 0.0044 29.6 12.5 102 33-149 44-147 (335)
114 PF12530 DUF3730: Protein of u 54.4 2.4E+02 0.0052 28.3 17.2 64 76-139 9-72 (234)
115 KOG0166 Karyopherin (importin) 54.1 47 0.001 37.8 8.1 100 36-135 157-267 (514)
116 TIGR02270 conserved hypothetic 53.9 51 0.0011 36.3 8.2 89 29-130 114-203 (410)
117 PF14631 FancD2: Fanconi anaem 53.6 28 0.00061 44.1 6.8 67 48-119 175-241 (1426)
118 KOG0953 Mitochondrial RNA heli 53.5 21 0.00046 41.0 5.2 114 207-329 502-626 (700)
119 PF08064 UME: UME (NUC010) dom 53.5 47 0.001 29.6 6.5 79 71-149 18-98 (107)
120 PF10165 Ric8: Guanine nucleot 52.9 3.6E+02 0.0079 29.9 20.4 191 66-268 20-259 (446)
121 KOG3428 Small nuclear ribonucl 52.8 7.3 0.00016 35.4 1.3 16 527-543 94-109 (109)
122 KOG4413 26S proteasome regulat 52.2 2.7E+02 0.0059 30.6 12.9 239 14-276 63-340 (524)
123 PRK14507 putative bifunctional 52.2 6.7E+02 0.015 33.0 18.3 167 200-410 1205-1384(1693)
124 PRK10590 ATP-dependent RNA hel 52.1 20 0.00044 39.2 4.9 17 289-305 277-293 (456)
125 PF05327 RRN3: RNA polymerase 51.1 2.3E+02 0.0049 32.5 13.1 191 119-326 10-210 (563)
126 PF14911 MMS22L_C: S-phase gen 50.2 3.9E+02 0.0084 29.5 14.8 188 42-276 158-360 (373)
127 KOG1062 Vesicle coat complex A 50.1 5.5E+02 0.012 31.2 16.4 193 43-237 154-379 (866)
128 PF03378 CAS_CSE1: CAS/CSE pro 49.4 1.2E+02 0.0027 33.6 10.4 159 138-407 25-189 (435)
129 KOG4501 Transcription coactiva 49.2 15 0.00032 41.9 3.1 18 529-546 671-688 (707)
130 KOG1943 Beta-tubulin folding c 49.2 2.9E+02 0.0063 34.3 13.8 61 35-96 640-704 (1133)
131 KOG0166 Karyopherin (importin) 49.1 4.7E+02 0.01 30.1 15.5 266 34-326 68-373 (514)
132 PTZ00034 40S ribosomal protein 48.3 12 0.00025 34.9 1.9 25 445-474 38-64 (124)
133 KOG1241 Karyopherin (importin) 48.0 3.5E+02 0.0077 32.6 13.9 277 30-326 404-728 (859)
134 PF12719 Cnd3: Nuclear condens 47.0 3.5E+02 0.0075 28.0 14.9 138 32-170 26-182 (298)
135 PF14664 RICTOR_N: Rapamycin-i 46.6 4E+02 0.0087 29.0 13.5 103 33-135 68-177 (371)
136 PF10521 DUF2454: Protein of u 46.0 1.2E+02 0.0026 31.3 9.2 67 69-135 120-204 (282)
137 COG5215 KAP95 Karyopherin (imp 46.0 3.8E+02 0.0082 31.6 13.3 89 12-113 430-542 (858)
138 PRK14511 maltooligosyl trehalo 45.6 6.6E+02 0.014 30.8 18.7 219 136-410 363-599 (879)
139 PF02985 HEAT: HEAT repeat; I 45.5 42 0.00091 23.0 4.0 28 107-134 2-29 (31)
140 COG5218 YCG1 Chromosome conden 43.4 65 0.0014 37.6 7.0 88 33-122 92-186 (885)
141 KOG1993 Nuclear transport rece 43.1 3.9E+02 0.0085 32.5 13.3 207 59-291 517-748 (978)
142 PF10395 Utp8: Utp8 family; I 43.0 1.7E+02 0.0038 34.5 10.5 73 185-267 535-619 (670)
143 PF12460 MMS19_C: RNAPII trans 42.8 4.8E+02 0.01 28.4 16.8 82 274-362 318-400 (415)
144 KOG1824 TATA-binding protein-i 42.7 7.7E+02 0.017 30.8 18.2 253 60-334 39-312 (1233)
145 PF12765 Cohesin_HEAT: HEAT re 42.6 38 0.00081 25.4 3.6 33 59-91 7-41 (42)
146 PF07794 DUF1633: Protein of u 41.5 18 0.0004 40.8 2.4 17 521-537 454-470 (790)
147 PF11698 V-ATPase_H_C: V-ATPas 40.8 1.8E+02 0.004 26.9 8.5 69 106-197 44-113 (119)
148 TIGR01648 hnRNP-R-Q heterogene 39.9 50 0.0011 38.1 5.6 11 466-476 297-307 (578)
149 PF12530 DUF3730: Protein of u 39.9 4E+02 0.0088 26.7 12.0 142 6-149 13-169 (234)
150 PF03715 Noc2: Noc2p family; 39.8 1.7E+02 0.0038 30.8 9.3 170 69-281 114-296 (299)
151 smart00185 ARM Armadillo/beta- 39.2 20 0.00042 25.0 1.5 28 69-96 13-40 (41)
152 KOG1060 Vesicle coat complex A 39.1 2.9E+02 0.0063 33.4 11.5 33 229-261 540-573 (968)
153 COG3280 TreY Maltooligosyl tre 38.9 6.5E+02 0.014 30.5 14.1 154 207-410 432-597 (889)
154 PTZ00034 40S ribosomal protein 38.7 21 0.00045 33.4 1.9 12 450-461 75-86 (124)
155 PF00714 IFN-gamma: Interferon 38.7 42 0.00092 31.9 4.0 57 8-66 14-70 (138)
156 KOG2202 U2 snRNP splicing fact 38.7 49 0.0011 34.4 4.8 18 532-549 242-259 (260)
157 COG5181 HSH155 U2 snRNP splice 38.6 7.6E+02 0.016 29.5 14.4 179 84-286 704-929 (975)
158 KOG0211 Protein phosphatase 2A 38.3 1.1E+02 0.0024 36.5 8.2 115 51-166 218-338 (759)
159 PF10193 Telomere_reg-2: Telom 38.1 68 0.0015 29.1 5.2 69 81-149 18-94 (114)
160 KOG1059 Vesicle coat complex A 37.1 36 0.00078 40.2 4.0 77 63-139 139-215 (877)
161 PF08360 TetR_C_5: QacR-like p 37.0 1.2E+02 0.0026 28.1 6.8 103 9-133 18-125 (131)
162 PF13764 E3_UbLigase_R4: E3 ub 36.9 6.4E+02 0.014 30.6 14.2 134 184-331 185-334 (802)
163 KOG2137 Protein kinase [Signal 36.8 1.8E+02 0.0039 34.4 9.4 118 51-172 258-398 (700)
164 COG5240 SEC21 Vesicle coat com 36.2 1.8E+02 0.004 34.0 9.1 134 29-170 408-555 (898)
165 PF05804 KAP: Kinesin-associat 36.1 5.5E+02 0.012 30.6 13.3 63 70-135 292-358 (708)
166 PF11838 ERAP1_C: ERAP1-like C 35.6 4.8E+02 0.01 26.4 13.2 122 92-238 136-263 (324)
167 KOG2479 Translation initiation 35.1 30 0.00064 38.6 2.7 12 529-540 141-152 (549)
168 PF03914 CBF: CBF/Mak21 family 34.7 2.5E+02 0.0054 26.4 8.7 71 254-326 21-94 (164)
169 PF15320 RAM: mRNA cap methyla 34.5 49 0.0011 28.7 3.5 6 467-472 30-35 (81)
170 PF02020 W2: eIF4-gamma/eIF5/e 34.2 88 0.0019 26.5 5.0 41 85-125 4-44 (84)
171 KOG1248 Uncharacterized conser 33.5 9.2E+02 0.02 30.5 14.8 109 5-114 646-765 (1176)
172 cd07920 Pumilio Pumilio-family 33.1 5.4E+02 0.012 26.2 15.6 59 66-129 57-116 (322)
173 PF06708 DUF1195: Protein of u 33.1 25 0.00054 33.5 1.6 36 55-97 109-144 (157)
174 KOG2079 Vacuolar assembly/sort 33.1 2.8E+02 0.0061 34.5 10.4 43 316-358 919-995 (1206)
175 cd00256 VATPase_H VATPase_H, r 33.0 38 0.00082 37.7 3.2 58 43-100 366-428 (429)
176 PLN03134 glycine-rich RNA-bind 32.8 38 0.00082 31.7 2.8 9 466-474 104-112 (144)
177 KOG0213 Splicing factor 3b, su 32.6 1E+03 0.022 29.2 18.3 230 35-286 802-1124(1172)
178 cd00159 RhoGAP RhoGAP: GTPase- 31.9 61 0.0013 29.6 4.0 67 50-116 54-123 (169)
179 COG3945 Uncharacterized conser 30.3 1.3E+02 0.0029 29.9 6.1 62 229-292 21-82 (189)
180 PF04826 Arm_2: Armadillo-like 30.3 2.6E+02 0.0056 28.9 8.5 50 81-131 108-160 (254)
181 KOG0105 Alternative splicing f 30.0 36 0.00079 34.1 2.2 7 452-458 23-29 (241)
182 KOG1242 Protein containing ada 29.7 8.6E+02 0.019 28.4 13.1 281 11-331 116-426 (569)
183 cd00864 PI3Ka Phosphoinositide 28.8 1.2E+02 0.0026 28.9 5.4 73 32-116 39-113 (152)
184 PF11935 DUF3453: Domain of un 28.5 96 0.0021 31.4 5.0 67 76-168 1-67 (239)
185 PF12235 FXR1P_C: Fragile X-re 28.3 25 0.00054 34.0 0.7 12 534-545 112-123 (155)
186 PF03130 HEAT_PBS: PBS lyase H 27.9 86 0.0019 21.1 3.1 26 84-115 1-26 (27)
187 PF03715 Noc2: Noc2p family; 27.8 7.5E+02 0.016 26.1 17.7 30 120-149 28-57 (299)
188 PF14675 FANCI_S1: FANCI solen 27.8 5.8E+02 0.013 26.0 10.4 49 30-78 5-53 (223)
189 COG1747 Uncharacterized N-term 27.5 1.1E+03 0.023 27.8 13.8 115 183-312 564-684 (711)
190 KOG2945 Predicted RNA-binding 27.0 65 0.0014 35.2 3.6 10 540-549 161-170 (365)
191 PF08161 NUC173: NUC173 domain 26.9 49 0.0011 32.8 2.6 42 90-132 153-197 (198)
192 COG1536 FliG Flagellar motor s 26.7 8.5E+02 0.018 26.4 15.6 152 11-167 59-244 (339)
193 PRK15338 type III secretion sy 26.5 9.1E+02 0.02 26.7 17.6 22 200-221 237-258 (372)
194 KOG2062 26S proteasome regulat 26.3 9.6E+02 0.021 29.2 12.8 214 72-349 8-222 (929)
195 PRK08451 DNA polymerase III su 25.7 8.4E+02 0.018 28.1 12.3 42 61-102 172-214 (535)
196 PF13764 E3_UbLigase_R4: E3 ub 25.2 1.3E+03 0.028 28.1 25.7 76 202-282 242-317 (802)
197 KOG1243 Protein kinase [Genera 25.0 6.4E+02 0.014 30.0 11.2 72 276-357 327-399 (690)
198 PF08678 Rsbr_N: Rsbr N termin 25.0 1.7E+02 0.0036 27.6 5.5 34 381-414 54-94 (129)
199 PF08580 KAR9: Yeast cortical 24.9 1.2E+03 0.026 27.7 15.4 102 285-413 187-293 (683)
200 PF06757 Ins_allergen_rp: Inse 24.5 2.5E+02 0.0055 27.0 7.0 59 137-219 99-158 (179)
201 PRK04537 ATP-dependent RNA hel 24.3 49 0.0011 37.7 2.3 16 290-305 290-305 (572)
202 cd07920 Pumilio Pumilio-family 24.2 7.7E+02 0.017 25.1 14.6 33 66-98 129-162 (322)
203 smart00549 TAFH TAF homology. 23.6 1.6E+02 0.0035 26.3 4.8 50 162-214 3-54 (92)
204 KOG2081 Nuclear transport regu 23.1 1.8E+02 0.0039 33.5 6.3 82 342-461 29-113 (559)
205 PF03810 IBN_N: Importin-beta 23.1 1.9E+02 0.0041 23.0 5.0 59 69-133 15-75 (77)
206 PF04147 Nop14: Nop14-like fam 22.9 9.3E+02 0.02 29.2 12.5 176 191-368 428-616 (840)
207 KOG0915 Uncharacterized conser 22.8 1.2E+03 0.026 30.6 13.4 88 72-167 1398-1497(1702)
208 smart00324 RhoGAP GTPase-activ 22.8 1E+02 0.0022 28.8 3.7 45 50-94 58-104 (174)
209 PF04380 BMFP: Membrane fusoge 22.6 1.8E+02 0.0038 24.8 4.8 35 181-215 24-61 (79)
210 smart00567 EZ_HEAT E-Z type HE 22.5 83 0.0018 21.1 2.3 28 83-116 2-29 (30)
211 TIGR01648 hnRNP-R-Q heterogene 22.4 55 0.0012 37.7 2.2 10 249-258 108-117 (578)
212 PF06012 DUF908: Domain of Unk 22.0 96 0.0021 32.9 3.8 52 52-111 253-307 (329)
213 PRK07994 DNA polymerase III su 21.9 1.1E+03 0.024 27.8 12.5 113 52-170 164-291 (647)
214 COG1498 SIK1 Protein implicate 21.9 3.1E+02 0.0067 30.5 7.6 19 184-202 227-245 (395)
215 PHA02713 hypothetical protein; 21.6 3.8E+02 0.0082 30.5 8.6 101 32-136 94-201 (557)
216 PRK12678 transcription termina 21.6 70 0.0015 37.4 2.8 11 527-537 259-269 (672)
217 KOG1241 Karyopherin (importin) 21.5 1.4E+03 0.031 27.8 13.1 37 68-104 498-537 (859)
218 PF08542 Rep_fac_C: Replicatio 21.2 3.3E+02 0.0071 22.6 6.2 38 267-306 31-68 (89)
219 PF08045 CDC14: Cell division 21.1 2.3E+02 0.005 29.6 6.2 78 66-175 131-209 (257)
220 PF05327 RRN3: RNA polymerase 21.0 2.3E+02 0.005 32.4 6.8 81 67-147 72-169 (563)
221 PF00620 RhoGAP: RhoGAP domain 20.7 2.9E+02 0.0063 24.9 6.2 45 50-94 55-101 (151)
222 PF12335 SBF2: Myotubularin pr 20.7 4.4E+02 0.0096 27.0 8.0 86 119-214 21-110 (225)
223 KOG3758 Uncharacterized conser 20.7 6.5E+02 0.014 29.6 10.0 166 157-353 398-581 (655)
224 KOG2023 Nuclear transport rece 20.6 3.7E+02 0.0081 32.1 8.1 71 53-138 174-248 (885)
225 KOG2072 Translation initiation 20.5 9.9E+02 0.022 29.3 11.6 32 382-413 769-804 (988)
226 KOG1916 Nuclear protein, conta 20.5 1.7E+03 0.038 27.8 16.9 262 48-353 977-1277(1283)
227 smart00755 Grip golgin-97, Ran 20.4 1.4E+02 0.003 23.2 3.4 31 108-139 9-39 (46)
228 PF06861 BALF1: BALF1 protein; 20.3 5.4E+02 0.012 25.6 8.1 90 187-289 55-153 (182)
229 KOG0168 Putative ubiquitin fus 20.1 9.6E+02 0.021 29.6 11.4 119 81-221 181-308 (1051)
No 1
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=100.00 E-value=3e-163 Score=1319.29 Aligned_cols=533 Identities=56% Similarity=0.883 Sum_probs=352.8
Q ss_pred HHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHh
Q 008918 10 QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAI 89 (549)
Q Consensus 10 ~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAI 89 (549)
+||+||++||||++|+|+++|+++|++||+++||++++|+|||||||||||+||+|+++|||||+|||||+|++||+|||
T Consensus 1 ~ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 1 NIEKLYENYEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp -HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred CHHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 90 k~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
|+||.|||+||||++||||||+||||+||++|+++|++||++||++||++||++||+||.++ +++||.+|||+|+||+
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--KSGDEQVRERALKFLR 158 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HS-HHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999853 4678999999999999
Q ss_pred hhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCC-CchhHHHHHHHHHHHhhhccccCCCC
Q 008918 170 DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEK-APTERMKELIGIIEGQADLDAQFNVS 248 (549)
Q Consensus 170 ~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~-~~~gr~qeLv~~i~eqa~Ld~~f~~s 248 (549)
+||+++++++++|++|+|++|+++|+|+|+|||++||++||+||++|++|+.. ++.|| |+||++|.+||+|+++|+++
T Consensus 159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~-qeLv~ii~eQa~Ld~~f~~s 237 (556)
T PF05918_consen 159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGR-QELVDIIEEQADLDQPFDPS 237 (556)
T ss_dssp HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHH-HHHHHHHHHHHTTTS---SS
T ss_pred HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHH-HHHHHHHHHHhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999998644 45565 99999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-h
Q 008918 249 DADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-K 327 (549)
Q Consensus 249 D~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ 327 (549)
|+++|||+|+|+++|+|||+++++|++||+|||++|||+|++||++.|++|||+|||+||||+++|+++++|+||++| +
T Consensus 238 D~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 238 DPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK 317 (556)
T ss_dssp SHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 008918 328 YMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKK 407 (549)
Q Consensus 328 ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikk 407 (549)
|||.+.+ +|++||||||||||+||+||+|+|++++++||||+||||||||+|+|++++++||++||+||++++|+|||+
T Consensus 318 ymP~~~~-~~~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikk 396 (556)
T PF05918_consen 318 YMPSKKT-EPKLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKK 396 (556)
T ss_dssp TS-----------HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCC-CCcccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998764 899999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCcccccccccCCCCCC------
Q 008918 408 LTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVP------ 481 (549)
Q Consensus 408 L~~~l~~~~K~~~~~k~denk~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~itlSW~~~~k~~~~------ 481 (549)
|+++|.+|+|+++++|+|+++.++++++|++++|||||+||++||++|||+||+|+++.+||+||++++++...
T Consensus 397 l~~~l~~~~k~~~~~k~~k~~~~lk~~~q~~~~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~~~~~~~k~~~~~ 476 (556)
T PF05918_consen 397 LKQALSEHNKAMSAAKTDKTKAELKTEEQIKVTALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEAKKPKLGKKHQPI 476 (556)
T ss_dssp HHHHH-----------TT--CCHHCSHHHHHHHHHHHHHHHHHHHCC----------------TTS--------------
T ss_pred HHHHhhhhcccccccCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcccccccccceeeeeccchhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999955699999998863211
Q ss_pred ------CCcccCCCCCCCCCCCCC-CcccccCCCCCCcchhhhhhhhcCCCCCC-----CCCCCCcccC-CCC--CCCCC
Q 008918 482 ------STTTASGGKRPASINGSG-NTASKKGRGSGGLQNQLVNRALEGISRGG-----RGGIRGRGRG-WGA--RGRGR 546 (549)
Q Consensus 482 ------~~~~~~~~~r~~~~~g~~-~~~~~~gr~~~~~~~~~~~~~~~g~~~~~-----~~g~rgrgr~-~g~--rgr~~ 546 (549)
++....+|+|++ ||.+ |...++||+++ +||+.++++..|.+++| |||+|||||| ||| |||||
T Consensus 477 ~~~~~~~~~~~~~~k~~~--~g~~~~~~~k~~~~~~-~~~~y~~p~~k~ss~~~~~~~~~g~gr~rg~~~ggg~grg~~r 553 (556)
T PF05918_consen 477 TFRNNASQQANTGGKRPA--NGKSNNSPAKKGRQQN-MQQQYVPPSGKYSSNGGNSGRGRGGGRGRGRRSGGGRGRGRGR 553 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccCCCc--CCCCCCcccccccchh-hccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Confidence 233556788886 4433 44668899887 89999999999987444 4566666665 333 66667
Q ss_pred CCC
Q 008918 547 GYR 549 (549)
Q Consensus 547 ~~~ 549 (549)
|||
T Consensus 554 ~~~ 556 (556)
T PF05918_consen 554 GFW 556 (556)
T ss_dssp ---
T ss_pred cCC
Confidence 999
No 2
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-118 Score=916.48 Aligned_cols=423 Identities=60% Similarity=0.882 Sum_probs=365.6
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHH
Q 008918 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQA 88 (549)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qA 88 (549)
++||+||++||||++|+|++||+++|++||++|||+.|+||||||||||||||||+|+++|||||+|||||+|++||+||
T Consensus 2 ~~ie~ly~~~e~l~~a~dk~q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qa 81 (460)
T KOG2213|consen 2 DNIEKLYEFYEILSEATDKSQHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQA 81 (460)
T ss_pred chHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHH
Q 008918 89 IRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (549)
Q Consensus 89 Ik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl 168 (549)
||+||.||++ +.++||+|||+|||+ +++|++||.||. .+||++|||+++||
T Consensus 82 ik~lp~fc~~--d~~~rv~d~l~qLLn----------------------k~sl~~Lf~~~~-----~~D~~irek~l~fi 132 (460)
T KOG2213|consen 82 IKGLPLFCKG--DALSRVNDVLVQLLN----------------------KASLTGLFGQIE-----VGDEQIREKVLKFI 132 (460)
T ss_pred HhccchhccC--chhhhhHHHHHHHHH----------------------HHHHHHHHhhhh-----hhhHHHHHHHHHHH
Confidence 9999999999 999999999999999 899999999998 57999999999999
Q ss_pred HhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCC
Q 008918 169 RDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVS 248 (549)
Q Consensus 169 ~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~s 248 (549)
++||++++.+++ ++|+|++|+++|||+|+|||++||.+||++|++|+++|+++|+.|+|+|++.++++|+||. |++|
T Consensus 133 ~tKl~~l~~e~L--~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~lda-f~~s 209 (460)
T KOG2213|consen 133 RTKLITLKGEVL--TKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDA-FNVS 209 (460)
T ss_pred HHHhhcccHHHh--hhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCc-ccCC
Confidence 999999999999 5899999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhccc-CCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-
Q 008918 249 DADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPV-FDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL- 326 (549)
Q Consensus 249 D~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~-l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L- 326 (549)
|+|+|||||+|+.+|+|||++|++||+||.|+|++|+|+ ++.+++++||++||+|||||+||+.+.|+++||+||++|
T Consensus 210 D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk 289 (460)
T KOG2213|consen 210 DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLK 289 (460)
T ss_pred ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 008918 327 KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMK 406 (549)
Q Consensus 327 ~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yik 406 (549)
+|||.|.+ .++++|||||||||+||+||+|.|+|++..||||+++|||+|.++++|....|+|..+|.-.+..++++..
T Consensus 290 ~yMpa~kt-~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~~~~ad~l~r~fq~y~K~t~E~L~t~edqiKat~~ 368 (460)
T KOG2213|consen 290 EYMPAPKT-GEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLKDFRADYLARGFQEYIKKTGEALKTEEDQIKATAL 368 (460)
T ss_pred HhcccCCc-cHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999987 88999999999999999999999999999998888886554444444444444444444444444444444
Q ss_pred HHHHHhhhhhhhHhhcCCh--HHHHHHHhhhccchhhhhhhccHHHHhhh--hhcCCCCccC
Q 008918 407 KLTQGLADHNKEMAAAKTD--EAKEKIKTQKQNTTTGLRTCNNILAMSKP--LHSKTPSFIG 464 (549)
Q Consensus 407 kL~~~l~~~~K~~~~~k~d--enk~k~~~~~q~~~~aL~~~~NI~~li~~--L~~~pPsf~~ 464 (549)
++++.|+.|.|.+...|++ +.+.-+....|.+++++++|+|+..++.. +++..|+|++
T Consensus 369 klT~~is~l~Kal~~~k~~~e~~~~Li~~l~Q~~aiG~r~a~~~La~t~~~~~~~~s~~~~~ 430 (460)
T KOG2213|consen 369 KLTQNISELIKALFHAKPDPEEEKQLIWTLVQNTTIGLRTANNILAMTKGFCFHHKSRSPMG 430 (460)
T ss_pred hhhccHHHHHhhHhcCCCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcccCCCCChhhhh
Confidence 4444444444444444444 22222233334444444444444444433 3444444444
No 3
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=7.4e-10 Score=116.79 Aligned_cols=73 Identities=29% Similarity=0.307 Sum_probs=65.4
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCC
Q 008918 381 EDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTP 460 (549)
Q Consensus 381 eD~~~~~kdF~~RLqyla~~~q~yikkL~~~l~~~~K~~~~~k~denk~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pP 460 (549)
+| +++++|| |++|++|+.|.||| |..++++++|+++|. ++++.++||+.+++++++.||
T Consensus 328 ~d-~K~L~~~--~ad~l~r~fq~y~K----------~t~E~L~t~edqiKa--------t~~klT~~is~l~Kal~~~k~ 386 (460)
T KOG2213|consen 328 CD-AKKLKDF--RADYLARGFQEYIK----------KTGEALKTEEDQIKA--------TALKLTQNISELIKALFHAKP 386 (460)
T ss_pred cc-hhhhccc--hHHHHhhhhHHHHH----------HHHHHHHHHHHHHHH--------hhhhhhccHHHHHhhHhcCCC
Confidence 35 7999999 99999999999998 455666789998886 899999999999999999999
Q ss_pred CccCCCcccccccccC
Q 008918 461 SFIGDKSVNLSWKEAT 476 (549)
Q Consensus 461 sf~~~~~itlSW~~~~ 476 (549)
.|+. .+++||..+.
T Consensus 387 ~~e~--~~~Li~~l~Q 400 (460)
T KOG2213|consen 387 DPEE--EKQLIWTLVQ 400 (460)
T ss_pred chhH--HHHHHHHHHH
Confidence 9998 9999998765
No 4
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.86 E-value=2.1e-06 Score=95.54 Aligned_cols=377 Identities=15% Similarity=0.215 Sum_probs=170.6
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHH
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaD 108 (549)
.++++-.++|+.. -+..+.+=|=--||.+.|+=|++-.+..|.+.-|.--||+.-+..+=+.|.+|-+-+|. .-+..
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~ 134 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--GTLTG 134 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--HHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--HHHHH
Confidence 4567888999999 77889988999999999999999999999999999999988888888888888776552 33778
Q ss_pred HHHHHHh--hchhHHHHHHHHHHHHHHhh----------chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh-hcccc
Q 008918 109 ILVQLLA--AEEIVERDAVHKALMSLLRQ----------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD-KVFPL 175 (549)
Q Consensus 109 VL~QLLq--sdd~~E~~~v~~aL~sllk~----------d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~-kl~~l 175 (549)
++.|++. ++|...++-+=+-|..-+.. +...-+...+.-+..+ -.++|- +.+|.||+. +++.-
T Consensus 135 lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D--VTaeEF--~l~m~lL~~lk~~~~ 210 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD--VTAEEF--ELFMSLLKSLKIYGG 210 (556)
T ss_dssp HHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT----HHHH--HHHHHHHHTSGG---
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh--ccHHHH--HHHHHHHHhCccccc
Confidence 8889983 22333344343334333332 2222233333333210 011111 233444443 33110
Q ss_pred hhhhcCChHHHHHHHHHHHHHhcc---ccc-HHHHHHHHHHHh-hccccCCCCchhHHHHHHHHHHHhhhccccCCCCCh
Q 008918 176 KAELLKPQEEMERHITDLIKKSLE---DVT-GAEFRMFMDFLK-SLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDA 250 (549)
Q Consensus 176 ~~e~~~~~eE~Ee~i~~~ikKvL~---dVT-~~EF~l~m~iL~-~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~ 250 (549)
.. -..-..++-+.|.++.. |. +++ .+=++.|+.++. .+|.|.. .+. -.+++.++.++.- . .|+..+.
T Consensus 211 ~~-t~~g~qeLv~ii~eQa~--Ld~~f~~sD~e~Idrli~C~~~Alp~fs~-~v~--Sskfv~y~~~kvl-P-~l~~l~e 282 (556)
T PF05918_consen 211 KQ-TIEGRQELVDIIEEQAD--LDQPFDPSDPESIDRLISCLRQALPFFSR-GVS--SSKFVNYMCEKVL-P-KLSDLPE 282 (556)
T ss_dssp GS-SHHHHHHHHHHHHHHHT--TTS---SSSHHHHHHHHHHHHHHGGG-BT-TB----HHHHHHHHHHTC-C-CTT----
T ss_pred cC-ChHHHHHHHHHHHHHhc--cCCCCCCcCHHHHHHHHHHHHHhhHHhcC-CCC--hHHHHHHHHHHhc-C-ChhhCCh
Confidence 00 00001233444443321 11 222 333444554443 4777754 322 2679999988622 1 2332223
Q ss_pred HHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhh---cccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-
Q 008918 251 DHIDRLISCLYMALPFFLRGASGSKFLNYLNKHI---IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL- 326 (549)
Q Consensus 251 e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~v---lP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L- 326 (549)
+.==+++..+-.+.||..... +..++..+-+.+ +|.-.. .++.++. --+++-..|..|
T Consensus 283 ~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~-~~~l~fs----------------~vEcLL~afh~La 344 (556)
T PF05918_consen 283 DRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKT-EPKLQFS----------------YVECLLYAFHQLA 344 (556)
T ss_dssp -HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-----------HH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCC-CCcccch----------------HhhHHHHHHHHHh
Confidence 322356777777888877555 677776665544 451110 0011111 122333444455
Q ss_pred hhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHH-
Q 008918 327 KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATM- 405 (549)
Q Consensus 327 ~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yi- 405 (549)
..-|. ++.-.|....-|- -|..- ++-.-++++. ||-.||.=|-..+|---..+...+
T Consensus 345 ~k~p~---------~~~~lCgyk~vtg----Qpsd~--------~~~~~~~~~k-df~~RL~yl~~~~q~yikkl~~~l~ 402 (556)
T PF05918_consen 345 RKSPN---------SLNFLCGYKIVTG----QPSDR--------YGEDDAEKLK-DFRERLQYLARGTQAYIKKLKQALS 402 (556)
T ss_dssp TT-TH---------HHH---------------------------------TTTH-HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhCcc---------hhhhHhhhccccc----ccccc--------cccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55442 2222232222211 12211 0101123344 888999999988887777777777
Q ss_pred ---HHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcC---CCCccC
Q 008918 406 ---KKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSK---TPSFIG 464 (549)
Q Consensus 406 ---kkL~~~l~~~~K~~~~~k~denk~k~~~~~q~~~~aL~~~~NI~~li~~L~~~---pPsf~~ 464 (549)
|++..+.++ |..+.+|+|+ |+++..- .-+.+-+.++.++-+=--.|..+ .||++.
T Consensus 403 ~~~k~~~~~k~~--k~~~~lk~~~-q~~~~aL-kt~~NI~~lik~L~~~pPsf~~~~~itlSWk~ 463 (556)
T PF05918_consen 403 EHNKAMSAAKTD--KTKAELKTEE-QIKVTAL-KTTNNILALIKDLFHNPPSFKSTKNITLSWKE 463 (556)
T ss_dssp ----------TT----CCHHCSHH-HHHHHHH-HHHHHHHHHHCC----------------TTS-
T ss_pred hhcccccccCCc--cchHHHHHHH-HHHHHHH-HHHhhHHHHHHHHhhCCcccccccccceeeee
Confidence 666666677 8888899988 7665322 12234455554444433333332 355554
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.97 E-value=0.0011 Score=71.91 Aligned_cols=127 Identities=16% Similarity=0.262 Sum_probs=98.2
Q ss_pred HhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-HHHHHHHHHhhch
Q 008918 40 AAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDILVQLLAAEE 118 (549)
Q Consensus 40 ~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-iaDVL~QLLqsdd 118 (549)
....++-.+-+|=.+++..- -|++.+..+..+..+..|.++-||+.|+-.+..+++..|+.+.. +.+.|.++|.+.+
T Consensus 88 l~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~ 165 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD 165 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS
T ss_pred hcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc
Confidence 34467788888888888866 78888999999999999999999999999999999999999888 7999999998888
Q ss_pred hHHHHHHHHHHHHHHhhchHH---HHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 119 IVERDAVHKALMSLLRQDVKA---SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 119 ~~E~~~v~~aL~sllk~d~k~---tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+..+.++-.+|..+ +.++.. .+..++..+... -+..++-++..+++++..
T Consensus 166 ~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~-l~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 166 PSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQL-LSDPDPWLQIKILRLLRR 218 (526)
T ss_dssp HHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHH-HTCCSHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhc-ccccchHHHHHHHHHHHh
Confidence 88887777777777 555554 455555554310 015566778888888774
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.83 E-value=0.013 Score=65.02 Aligned_cols=339 Identities=18% Similarity=0.223 Sum_probs=194.9
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHH--HhcCCHHHHHHHhhhhHHhhccCcc-----chHHHHHHhhhhccccc
Q 008918 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIE--AAKTSLKAKQLAAQLIPRFFKFFPD-----LSSRAVDAHLDLIEEEE 81 (549)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~--~~kg~~k~K~LaaQfI~kffk~FP~-----L~e~Ai~a~lDLcEDed 81 (549)
+.|+..=+..+++-++.+-..-...|...|. ..+.++.+|+||..-|.+...+-.. .....+..++++..|+|
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 3344333333444343332222455655554 3458899999999999999887765 24667788899999999
Q ss_pred hhHHHHHhhhcccccccCccchhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHH--H--HHHHHhhhcCC
Q 008918 82 LGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVKAS--L--TALFKHIGSVD 152 (549)
Q Consensus 82 ~~IR~qAIk~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~t--L--~~lf~qI~~~~ 152 (549)
..|-..|++.|..+|+.. ..+..+ ...|.+++...+...+--|-..++.+.+..+... . +|+|+.+..
T Consensus 133 ~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~-- 209 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK-- 209 (503)
T ss_pred HHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH--
Confidence 999999999999999854 455555 7788999999777778888888888887754421 1 236666653
Q ss_pred CCCChH-HHHHHHHHHHHhhcc-cchhhhcCChHHHHHHHHHHHHHhcccccHHH-H-----HHHHHHHhhccccCCCCc
Q 008918 153 EPSTDE-FIREKVLSFIRDKVF-PLKAELLKPQEEMERHITDLIKKSLEDVTGAE-F-----RMFMDFLKSLSLFGEKAP 224 (549)
Q Consensus 153 e~~~eE-~vREr~l~Fl~~kl~-~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~E-F-----~l~m~iL~~l~~~~t~~~ 224 (549)
+-.+|| .++.-++..|..=.. +-...++ .+.-|++.|-..|.+.+.+. + .-+|.+...+-.+++...
T Consensus 210 eL~~dDiLvqlnalell~~La~~~~g~~yL-----~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 210 ELDSDDILVQLNALELLSELAETPHGLQYL-----EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred HhcCccHHHHHHHHHHHHHHHcChhHHHHH-----HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 223344 579888888775222 2222223 22335555555555554444 3 223455555544421111
Q ss_pred hhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHH--------HHhhhcccCCCCChhhh
Q 008918 225 TERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNY--------LNKHIIPVFDKLPEERK 296 (549)
Q Consensus 225 ~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y--------~~~~vlP~l~~l~e~~k 296 (549)
.++...+++.+. ..++..|+.... |.--++-.+...+.+-.++.+ +.+.+.-.....+.+.|
T Consensus 285 ~~~~p~~~~~l~------~~~~s~d~~~~~----~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 285 LELYPAFLERLF------SMLESQDPTIRE----VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred HHHHHHHHHHHH------HHhCCCChhHHH----HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 111122333333 234455554443 333366666666666555511 22233333444456889
Q ss_pred hhHHHHHHHhCCCCCh---hhhhhhHHHHHHHhhhcCCCCC-----CCCccchHHHHHHHHHHHHhhhcCchhhhhcccc
Q 008918 297 LDLLKALAEISPYTTP---QDSRQILPSVAVLLKYMPLRKT-----GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGY 368 (549)
Q Consensus 297 l~lLK~lAE~s~~~~~---~da~~~l~~i~~~L~ymP~~~~-----~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~ 368 (549)
++.|..|+.+-...+. ++...+....|+.+ ...|. .--+=.|..+-|--|.|=+---.+|-....+|..
T Consensus 355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~---~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~ 431 (503)
T PF10508_consen 355 LRALHALASILTSGTDRQDNDILSITESWYESL---SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSS 431 (503)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh---cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhC
Confidence 9999999999544333 22334455555554 22221 0122356777777776554444444444444443
No 7
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.70 E-value=0.0015 Score=62.52 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=109.3
Q ss_pred HHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCcc-chhhHHHHHHHHHhhchhHHHHH
Q 008918 46 KAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE-YLSKIVDILVQLLAAEEIVERDA 124 (549)
Q Consensus 46 k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e-~~~riaDVL~QLLqsdd~~E~~~ 124 (549)
.++--+--.+.-.-..||++.|.-+..+++...|+++.||++|+.-|..|-..+.- +-..+-.-+..+|.++++..+..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 34444555567777889999999999999999999999999999999998644211 12234233345788899999999
Q ss_pred HHHHHHHHHhh-chHHHHHH---HHHhhhcCCC-C---CChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHH
Q 008918 125 VHKALMSLLRQ-DVKASLTA---LFKHIGSVDE-P---STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (549)
Q Consensus 125 v~~aL~sllk~-d~k~tL~~---lf~qI~~~~e-~---~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikK 196 (549)
++..|.++.+. +|...... ++.++....+ + ...+.-|.++++|+-..+.. .+..+..+..++.+
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--------d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--------DKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHH
Confidence 99999999998 66643333 3333332221 1 23455689999998877742 34556666666666
Q ss_pred hcccc---cHHHHHHHHHHHhh
Q 008918 197 SLEDV---TGAEFRMFMDFLKS 215 (549)
Q Consensus 197 vL~dV---T~~EF~l~m~iL~~ 215 (549)
++..+ ++....-+.-+|++
T Consensus 155 ~~~~~~~~~~~~~~d~~~~l~~ 176 (178)
T PF12717_consen 155 FLNAVVDEDERVLRDILYCLSC 176 (178)
T ss_pred HHHHcccccHHHHHHHHHHHHC
Confidence 66655 44444444444443
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=97.63 E-value=0.029 Score=65.32 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=88.1
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHH
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~Q 112 (549)
|-.++.... .+...|||.--++-.|.+.-|+++--|||++..=|.|.++.||--|||-|..+.. ++.+.-+..-|.+
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk 147 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRR 147 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 444555554 6799999999999999999999999999999999999999999999999888765 4667777788888
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhchH
Q 008918 113 LLAAEEIVERDAVHKALMSLLRQDVK 138 (549)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~d~k 138 (549)
.|.+.+|-++..+=-++..+++.+|.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 89888888888888888888888874
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.85 E-value=0.091 Score=57.06 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=108.7
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHH
Q 008918 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (549)
Q Consensus 32 ~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL 110 (549)
..|-.++.... .+...|||+==++..|+..=|++.--++|++..=+.+.++.||--|++.|..+| +++.+.-+.+.+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v 119 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDV 119 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHH
Confidence 45667777655 779999999999999999999999999999999999999999999999999999 679999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHhhchHHH---HHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 111 VQLLAAEEIVERDAVHKALMSLLRQDVKAS---LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 111 ~QLLqsdd~~E~~~v~~aL~sllk~d~k~t---L~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
.++|.+.++..+..+=-++..+++.+|... +...+.++.. +.+..|+.-++..+..
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~----d~~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS----DKDPSVVSAALSLLSE 178 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT----HSSHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc----CCcchhHHHHHHHHHH
Confidence 999999999999888889999999887653 2333444431 3334577767766553
No 10
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.46 E-value=0.013 Score=48.24 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=55.3
Q ss_pred cCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhH-
Q 008918 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV- 120 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~- 120 (549)
.+++.++.-|+..+.++. ..+++..++.++.|+++.||.+|+..|-.+- -++..+.|.++|++++..
T Consensus 11 ~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~l~~~~~~~ 78 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKLLQDDDDEV 78 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHHHTC-SSHH
T ss_pred CCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHHHcCCCcHH
Confidence 367888888888888442 4588899999999999999999999988883 246888888888886543
Q ss_pred HHHHHHHHH
Q 008918 121 ERDAVHKAL 129 (549)
Q Consensus 121 E~~~v~~aL 129 (549)
.+.++-.||
T Consensus 79 vr~~a~~aL 87 (88)
T PF13646_consen 79 VREAAAEAL 87 (88)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 344444443
No 11
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.28 E-value=0.016 Score=50.67 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=73.4
Q ss_pred HHHHHHhhhhccccchhHHHHHhhhcccccccCc---cchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHH
Q 008918 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP---EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTA 143 (549)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~---e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~ 143 (549)
.+.++..+..+.|..+.||..|+..|-.+.+.+. ..+++|.+++.+.|+.+|+=..-.+=|+|.+|...+|..++..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 4566777777889999999999999999975544 6788999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 008918 144 LFKHIG 149 (549)
Q Consensus 144 lf~qI~ 149 (549)
|+..-.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 988765
No 12
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.11 Score=60.04 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=54.1
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccc
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF 95 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~l 95 (549)
|-..+.... .+-..|+|.=..+-.|.+-=|+++.-|+|.+++=|+|+++.||.-|||.+-.+
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l 113 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL 113 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE
Confidence 344444444 56899999999999999999999999999999999999999999999988766
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.14 E-value=0.022 Score=48.52 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=68.7
Q ss_pred HHHHHHhhhhccccchhHHHHHhhhcccccccCccchh-----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH---
Q 008918 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--- 138 (549)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~-----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--- 138 (549)
...+..+++++.|.+..+|..|+..|-.+|..++++.. .+.+.|.++|+++++..+..+=.+|..|....+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34678888899999999999999999999987666643 3667889999998887777777777777665432
Q ss_pred -----HHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 139 -----ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 139 -----~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+.+..+...+. .++..+|+.++.++.
T Consensus 86 ~~~~~g~l~~l~~~l~-----~~~~~~~~~a~~~l~ 116 (120)
T cd00020 86 IVLEAGGVPKLVNLLD-----SSNEDIQKNATGALS 116 (120)
T ss_pred HHHHCCChHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 23444444443 234456666655543
No 14
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.07 E-value=0.072 Score=51.00 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=74.0
Q ss_pred chhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch---HHHH-HHHHHhhhcCCCCCC
Q 008918 81 ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV---KASL-TALFKHIGSVDEPST 156 (549)
Q Consensus 81 d~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~---k~tL-~~lf~qI~~~~e~~~ 156 (549)
++.||..||-.+.+||.-.|..+....+-|...|.++++..+..+=..|..|+..|. ++.+ ..++.-+. .+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~-----D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLV-----DE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHc-----CC
Confidence 578999999999999999999999999999999999999999999999999998875 4544 45555444 55
Q ss_pred hHHHHHHHHHHHHhhccc
Q 008918 157 DEFIREKVLSFIRDKVFP 174 (549)
Q Consensus 157 eE~vREr~l~Fl~~kl~~ 174 (549)
++.+|.-+..|+.+-...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 667999999998875544
No 15
>PRK09687 putative lyase; Provisional
Probab=96.05 E-value=0.072 Score=55.04 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=71.6
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhh-ccccchhHHHHHhhhcccccccCccchhhHH
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~qAIk~Lp~lck~~~e~~~ria 107 (549)
..+.+..+..+.+ .++.+.+.|+.-+..+- +=+..+.+++..+..+ .+|.|+.||.+|+..|-.+|.....+.++..
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg-~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~ 130 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQLG-MAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV 130 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence 4566777777665 67888888888777753 2222267888888877 7788888888888888888877666667777
Q ss_pred HHHHHHHhhchhHHHHHHHHHHH
Q 008918 108 DILVQLLAAEEIVERDAVHKALM 130 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~ 130 (549)
..|..++.++++.++-.+=.||-
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHh
Confidence 77777777777766666655553
No 16
>PRK09687 putative lyase; Provisional
Probab=96.05 E-value=0.31 Score=50.37 Aligned_cols=125 Identities=17% Similarity=0.081 Sum_probs=79.7
Q ss_pred hHHHHHHH-hc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHH
Q 008918 33 DYEGIIEA-AK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (549)
Q Consensus 33 ~Y~~Il~~-~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL 110 (549)
.+..++.. .+ .++.+..-|+.-+..+...-+.....+++.+..+..|++..||..|+.+|..+.. ....+.|
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------~~ai~~L 164 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------EAAIPLL 164 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------HHHHHHH
Confidence 34444433 23 5667777777777777666665666777777777777777777777777765542 2566777
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 111 VQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 111 ~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
.++|.++++..+..+-.+|-.+ ..+...+...|..-+. ..++.||..++.-|.
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~-----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN-KYDNPDIREAFVAMLQ-----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhc-----CCChHHHHHHHHHHH
Confidence 7777777776666666666555 3344456666666554 455667777665543
No 17
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.5 Score=58.25 Aligned_cols=106 Identities=25% Similarity=0.362 Sum_probs=87.9
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHH
Q 008918 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ria 107 (549)
.|.+--.+|..-.- .++.++.-|=.++.||.-..|++..+=.+.+..=+-|..+.||+-|||=|-.+|.++|+ .+++.
T Consensus 852 ~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~ 930 (1692)
T KOG1020|consen 852 SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIV 930 (1692)
T ss_pred cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHH
Confidence 34444444444333 67899999999999999999999999999999989999999999999999999999987 68899
Q ss_pred HHHHHHHhh---chhHHHHHHHHHHHHHHhh
Q 008918 108 DILVQLLAA---EEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 108 DVL~QLLqs---dd~~E~~~v~~aL~sllk~ 135 (549)
|+.+.||-- ||...-..|...+..++=.
T Consensus 931 ~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 931 DMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 999999864 5555788888888887743
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.98 E-value=0.028 Score=46.24 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=62.2
Q ss_pred HHHhhhhc-cccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008918 70 VDAHLDLI-EEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (549)
Q Consensus 70 i~a~lDLc-EDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI 148 (549)
|..+++++ +|.++.||..|++.|-.+.. +++.+.|.++|+++++..+..+-.+|- ++.....+..|...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~---~i~~~~~~~~L~~~l 71 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALG---RIGDPEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHH---CCHHHHTHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Confidence 56788988 89999999999999997753 378999999998888876666655555 455566777777766
Q ss_pred hcCCCCCChHHHHHHHHH
Q 008918 149 GSVDEPSTDEFIREKVLS 166 (549)
Q Consensus 149 ~~~~e~~~eE~vREr~l~ 166 (549)
.+ +.+..+|+-++.
T Consensus 72 ~~----~~~~~vr~~a~~ 85 (88)
T PF13646_consen 72 QD----DDDEVVREAAAE 85 (88)
T ss_dssp TC-----SSHHHHHHHHH
T ss_pred cC----CCcHHHHHHHHh
Confidence 52 234567876664
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=95.98 E-value=2.1 Score=50.26 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=96.7
Q ss_pred HhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchh--hHHHHHHHHHhhc
Q 008918 40 AAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAE 117 (549)
Q Consensus 40 ~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~--riaDVL~QLLqsd 117 (549)
....++-.+-||=..+..- .-|++.+..+.++...+.|.++-||+.|+=++..+.+.+|+.+. ...|.|..||.+.
T Consensus 114 l~d~Np~IRaLALRtLs~I--r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~ 191 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCI--RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN 191 (746)
T ss_pred cCCCCHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC
Confidence 3346777888887777763 46899999999999999999999999999999999988888865 5789999999988
Q ss_pred hhHHHHHHHHHHHHHHhhch------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 118 EIVERDAVHKALMSLLRQDV------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 118 d~~E~~~v~~aL~sllk~d~------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
++.++..+=.+|..+-..+| +..+..|+..|. +-+|-.+-.+|.+|..
T Consensus 192 dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~-----e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 192 NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLP-----ECNEWGQLYILELLAA 245 (746)
T ss_pred CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhh-----cCChHHHHHHHHHHHh
Confidence 88877777777777766555 556666776664 3445566677777753
No 20
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.92 E-value=1 Score=53.23 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=72.5
Q ss_pred HHhhhhHHhhccCccc---hHHHHHHhhhhcc-ccchhHHHHHhhhcccccccCc--cchhhHHHHHHHHHhhchhHHHH
Q 008918 50 LAAQLIPRFFKFFPDL---SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTP--EYLSKIVDILVQLLAAEEIVERD 123 (549)
Q Consensus 50 LaaQfI~kffk~FP~L---~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~--e~~~riaDVL~QLLqsdd~~E~~ 123 (549)
=|-=||++|-+.||.- -..-+++.+-..- |+.+.+|+.|++.+...|+-.+ ...+.|-|+|.||...-+.....
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~ 548 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLV 548 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHH
Confidence 3556788998887654 5555666665554 7777889999999999995432 34788999999999988888999
Q ss_pred HHHHHHHHHHhhchHHH
Q 008918 124 AVHKALMSLLRQDVKAS 140 (549)
Q Consensus 124 ~v~~aL~sllk~d~k~t 140 (549)
.+-.+|.+..+.||+-+
T Consensus 549 llmE~Ls~vv~~dpef~ 565 (1005)
T KOG2274|consen 549 LLMEALSSVVKLDPEFA 565 (1005)
T ss_pred HHHHHHHHHhccChhhh
Confidence 99999999999999854
No 21
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.88 E-value=0.082 Score=56.23 Aligned_cols=26 Identities=69% Similarity=1.182 Sum_probs=17.0
Q ss_pred CCCCCCCC---CCCCcccCCCCCCCCCCC
Q 008918 523 GISRGGRG---GIRGRGRGWGARGRGRGY 548 (549)
Q Consensus 523 g~~~~~~~---g~rgrgr~~g~rgr~~~~ 548 (549)
|-+|||++ |+||+|||.||||.|+||
T Consensus 356 gg~Rgg~Gg~~gGrGgGRGggG~GGGggy 384 (465)
T KOG3973|consen 356 GGSRGGSGGNWGGRGGGRGGGGRGGGGGY 384 (465)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 55666544 466666766677777786
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.39 E-value=0.066 Score=45.52 Aligned_cols=91 Identities=19% Similarity=0.097 Sum_probs=72.3
Q ss_pred cCCHHHHHHHhhhhHHhhccCccchH-----HHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-----HHHHHH
Q 008918 42 KTSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILV 111 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL~ 111 (549)
+++...+.-|..-+..+..+.|+... .++..++++..|+++.||..|+..|-.||.+.++.... +..+|.
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence 36678888888888888888777633 66778999999999999999999999999887654333 577889
Q ss_pred HHHhhchhHHHHHHHHHHHHH
Q 008918 112 QLLAAEEIVERDAVHKALMSL 132 (549)
Q Consensus 112 QLLqsdd~~E~~~v~~aL~sl 132 (549)
++|++++...+..+-.+|.+|
T Consensus 98 ~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 999988877777776666655
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.79 E-value=1.2 Score=57.19 Aligned_cols=294 Identities=14% Similarity=0.122 Sum_probs=155.0
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccch-----HHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhH-
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI- 106 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ri- 106 (549)
...++..-+ ++...++.|+..|....+.-++.. .-||..+++|....+..+|.+|+-.|..+|.+.++.-..|
T Consensus 448 Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~ 527 (2102)
T PLN03200 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE 527 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 334444344 788899999999988887666543 4678999999999999999999999999998654432224
Q ss_pred ----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchh--hhc
Q 008918 107 ----VDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKA--ELL 180 (549)
Q Consensus 107 ----aDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~--e~~ 180 (549)
..-|+++|.+.++.-...+-++|.+|....-..++.-+..-+. .++..++..++.=|.. +..+.. +..
T Consensus 528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl-----sdd~~~~~~aL~vLgn-Ilsl~~~~d~~ 601 (2102)
T PLN03200 528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL-----GDLPESKVHVLDVLGH-VLSVASLEDLV 601 (2102)
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc-----CCChhHHHHHHHHHHH-HHhhcchhHHH
Confidence 3367889998877666667777777766544445555444433 2333344444431111 101000 000
Q ss_pred CChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCch-----hHHHHHHHHHHHhhhccccCCCCChHHHHH
Q 008918 181 KPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT-----ERMKELIGIIEGQADLDAQFNVSDADHIDR 255 (549)
Q Consensus 181 ~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~-----gr~qeLv~~i~eqa~Ld~~f~~sD~e~idR 255 (549)
+..-+ ..-.++.+.+.|+.-+...-..-..+|..+-......+. |-+.+||.++. ..+. +.
T Consensus 602 ~~g~~-~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs----------s~~~---~v 667 (2102)
T PLN03200 602 REGSA-ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT----------NNTE---AV 667 (2102)
T ss_pred HHhhh-ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh----------cCCh---HH
Confidence 00000 011223333333333333333223333322221100000 00111222221 1111 22
Q ss_pred HHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCC----ChhhhhhHHHHHHHhCCCCC-hhh--hhhhHHHHHHHh-h
Q 008918 256 LISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL----PEERKLDLLKALAEISPYTT-PQD--SRQILPSVAVLL-K 327 (549)
Q Consensus 256 li~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l----~e~~kl~lLK~lAE~s~~~~-~~d--a~~~l~~i~~~L-~ 327 (549)
-.++.+ |+-...++.....-..++-..++|-|-++ +.+.+-.-+..|+-++.... ..+ ....++++..+| +
T Consensus 668 ~keAA~-AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~ 746 (2102)
T PLN03200 668 ATQSAR-ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE 746 (2102)
T ss_pred HHHHHH-HHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh
Confidence 222222 33333334444444455666677755554 23456677777777776542 221 234466666666 5
Q ss_pred hcCCCCCCCCccchHHHHHHHHHHHHhhhcCc
Q 008918 328 YMPLRKTGGEEMNFTYVECLLYTFHHLAHKAP 359 (549)
Q Consensus 328 ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P 359 (549)
--|. -=|+--.++|+|++..|
T Consensus 747 G~~~-----------~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 747 GTLE-----------GKRNAARALAQLLKHFP 767 (2102)
T ss_pred CChH-----------HHHHHHHHHHHHHhCCC
Confidence 4443 23788899999999998
No 24
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.42 E-value=0.046 Score=64.07 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=12.6
Q ss_pred HHHhhhcCch-hhhhcccccccc
Q 008918 351 FHHLAHKAPN-ATNSLCGYKIVT 372 (549)
Q Consensus 351 fh~L~~K~P~-~l~~lcg~k~~T 372 (549)
|+...=++|. || .+|.||-|
T Consensus 1028 ~S~qdM~fPsPFF--VFGEKIRT 1048 (1282)
T KOG0921|consen 1028 NSRQEMDFPSPFF--VFGEKIRT 1048 (1282)
T ss_pred CcccccCCCCcee--eechhhhh
Confidence 5666667777 43 36777666
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=1.3 Score=53.31 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=90.9
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhcc----ccchhHHHHHhhhcccccccC---cc
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE----EEELGVRVQAIRGLPLFCKDT---PE 101 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcE----Ded~~IR~qAIk~Lp~lck~~---~e 101 (549)
-.+...-++..++ ++++....|=-.+...-..|++-...=|+.++-|.. |.+..||+.|+|++-.+...+ +.
T Consensus 116 WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 4455566667777 778888877777666666666655543444444433 777779999999999986433 44
Q ss_pred c-------hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcC-----CCCCChHHHHHHHHHHHH
Q 008918 102 Y-------LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV-----DEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 102 ~-------~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~-----~e~~~eE~vREr~l~Fl~ 169 (549)
- +|++..||.-+++.+|..-..-+=++|.+++...|| -++..|++|... ..-+=|+.+|-.+|.||.
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4 444555555556667776778888999999999998 455555555421 111224556777776665
Q ss_pred h
Q 008918 170 D 170 (549)
Q Consensus 170 ~ 170 (549)
.
T Consensus 275 s 275 (1075)
T KOG2171|consen 275 S 275 (1075)
T ss_pred H
Confidence 4
No 26
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=2.4 Score=49.61 Aligned_cols=246 Identities=20% Similarity=0.189 Sum_probs=146.3
Q ss_pred CccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHH
Q 008918 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL 141 (549)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL 141 (549)
=|+|.+.-+-++.+-.|-.-+=||+.||-+|-.+-|.....++...+.+.-.|.+|.. -.--+||++.|+..||.-+|
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~D--psCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQD--PSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccC--chhHHHHHHHHHhcCHHHHH
Confidence 3888999999999999999999999999999999988666688899999888887643 45678999999999987766
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHH----HHHHHHHHhhcc
Q 008918 142 TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE----FRMFMDFLKSLS 217 (549)
Q Consensus 142 ~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~E----F~l~m~iL~~l~ 217 (549)
.-+...|. +++ .++...+-.|++.|+|+-.. +.+| |..++.+|.+..
T Consensus 206 ~Yl~~~id------------------------qi~----~~~~~LqlViVE~Irkv~~~-~p~~~~~~i~~i~~lL~sts 256 (948)
T KOG1058|consen 206 NYLLSNID------------------------QIP----SFNDSLQLVIVELIRKVCLA-NPAEKARYIRCIYNLLSSTS 256 (948)
T ss_pred HHHHhhHh------------------------hcc----CccHHHHHHHHHHHHHHHhc-CHHHhhHHHHHHHHHHhcCC
Confidence 66555543 222 35667777788888886552 2334 345666666553
Q ss_pred ccCCCCchhHHHHHHHHHHHhhh-ccccCCCCChHHHHHHHHHHHHhhhhhccC--------------CChhhHHHHHHh
Q 008918 218 LFGEKAPTERMKELIGIIEGQAD-LDAQFNVSDADHIDRLISCLYMALPFFLRG--------------ASGSKFLNYLNK 282 (549)
Q Consensus 218 ~~~t~~~~gr~qeLv~~i~eqa~-Ld~~f~~sD~e~idRli~cl~~Alp~fs~~--------------v~st~f~~y~~~ 282 (549)
..- + . |-|. |-.. ++||..+.+..+|+-..+---|.+ ...-+.++=+.-
T Consensus 257 saV------~-f-------Eaa~tlv~l--S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~m 320 (948)
T KOG1058|consen 257 SAV------I-F-------EAAGTLVTL--SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIM 320 (948)
T ss_pred chh------h-h-------hhcceEEEc--cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHH
Confidence 210 0 1 1111 1110 234444443333332222111111 111222222333
Q ss_pred hhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh--hhcCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008918 283 HIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL--KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 360 (549)
Q Consensus 283 ~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L--~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~ 360 (549)
.||++|+.=+-+.+--.|-.--+++ ..-.++.|.+.| +.|-.-.. +.+=+-.|=-.|+=++|..+-+.|+
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLv-------ssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLV-------SSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhh-------hhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChH
Confidence 5566555321121111122211221 123466677777 45543332 4556777888899999999999998
Q ss_pred hh
Q 008918 361 AT 362 (549)
Q Consensus 361 ~l 362 (549)
..
T Consensus 393 ~a 394 (948)
T KOG1058|consen 393 VA 394 (948)
T ss_pred HH
Confidence 54
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.17 E-value=1.5 Score=52.28 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (549)
.++.+.+.|++.+.++. .+.++..+.-+.+|+|+.||..|+..|-.+...- .-.++|.++|+++++..+
T Consensus 633 ~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 633 PDPGVRRTAVAVLTETT------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----PPAPALRDHLGSPDPVVR 701 (897)
T ss_pred CCHHHHHHHHHHHhhhc------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----CchHHHHHHhcCCCHHHH
Confidence 66666666766666654 2445666666666777777777766665553211 113466666666666555
Q ss_pred HHHHHHHHHH
Q 008918 123 DAVHKALMSL 132 (549)
Q Consensus 123 ~~v~~aL~sl 132 (549)
.++=.+|..+
T Consensus 702 ~~A~~aL~~~ 711 (897)
T PRK13800 702 AAALDVLRAL 711 (897)
T ss_pred HHHHHHHHhh
Confidence 5555555443
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.21 E-value=1.7 Score=42.35 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=92.1
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHH
Q 008918 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (549)
Q Consensus 29 ~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaD 108 (549)
++.++...+-..++++. ...+.+.|+..+. +.+..+...+.|.-..|-+.|+.-|-.++..-..++...+|
T Consensus 23 ~r~~al~~L~~l~~~~~-----~~~~~~~~~~~l~----~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNA-----PEDFPPDFVECLR----QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HHHHHHHHHHHHHHH-B----------HHHHHHHH-------HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-----ccccHHHHHHHHH----HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 45555555555555441 1234444444443 55677777888888999999988888887554455555555
Q ss_pred HHH----HHHhhchhHHHHHHHHHHHHHHhhch--HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccch--hhhc
Q 008918 109 ILV----QLLAAEEIVERDAVHKALMSLLRQDV--KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK--AELL 180 (549)
Q Consensus 109 VL~----QLLqsdd~~E~~~v~~aL~sllk~d~--k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~--~e~~ 180 (549)
.++ ..+.+....-++.+.++|.+++..-+ ...+..++.+... +-...+|+.++.|+..-+...+ ...+
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~----~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLK----SKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-----S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 544 44455666889999999999999977 4443566665543 4455799999999998777766 3444
Q ss_pred CChHHHHHHHHHHHHHhcccccHH
Q 008918 181 KPQEEMERHITDLIKKSLEDVTGA 204 (549)
Q Consensus 181 ~~~eE~Ee~i~~~ikKvL~dVT~~ 204 (549)
... ..-..++..|.+.|.|-.++
T Consensus 170 ~~~-~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 170 QKS-AFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp --H-HHHHHHHHHHHHHHTSS-HH
T ss_pred ccc-chHHHHHHHHHHHCCCCCHH
Confidence 221 12256777888888887653
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.20 E-value=0.51 Score=56.16 Aligned_cols=92 Identities=24% Similarity=0.268 Sum_probs=69.3
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf 145 (549)
...+++.++..++|+|+.||.+|++.|..+.. +.....|.++|.++++.++.++=.+|..+....+. ...|.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--~~~L~ 690 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--APALR 690 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--hHHHH
Confidence 44577889999999999999999999999864 35778999999999999999998888877543221 12333
Q ss_pred HhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 146 KHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 146 ~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
..+. ++++.||.-++..|..
T Consensus 691 ~~L~-----~~d~~VR~~A~~aL~~ 710 (897)
T PRK13800 691 DHLG-----SPDPVVRAAALDVLRA 710 (897)
T ss_pred HHhc-----CCCHHHHHHHHHHHHh
Confidence 3333 3566789888876653
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.71 E-value=2.7 Score=54.20 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=95.5
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc-----hHHHHHHhhhhccccchhHHHHHhhhcccccccCcc----c
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE----Y 102 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e----~ 102 (549)
.-..+.+..+ |++..|+.|+..|..||..=|+. ...+|--++.|....+..+|++|-..|-.+.....+ +
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3445555555 89999999999999999987775 456788899999999999999999999988743322 1
Q ss_pred -hhh-HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch-H------HHHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 008918 103 -LSK-IVDILVQLLAAEEIVERDAVHKALMSLLRQDV-K------ASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 103 -~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~-k------~tL~~lf~qI~~~~e~~~eE~vREr~l~F 167 (549)
+.. +.-.|++||.+.+....+.+-.+|..+++..- + +.+..|...+. +|.+..|+-+-.=
T Consensus 690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr-----~G~~~~k~~Aa~A 758 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR-----EGTLEGKRNAARA 758 (2102)
T ss_pred HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH-----hCChHHHHHHHHH
Confidence 333 67789999999999888888888888887531 1 22344445554 5555666554443
No 31
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=91.10 E-value=0.28 Score=57.96 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=12.4
Q ss_pred hccCccchHHHHHHhhhhccccc
Q 008918 59 FKFFPDLSSRAVDAHLDLIEEEE 81 (549)
Q Consensus 59 fk~FP~L~e~Ai~a~lDLcEDed 81 (549)
+.+||..+-..+..|=.+.|.+-
T Consensus 675 y~ilp~Hsq~~~~eqrkvf~~~p 697 (1282)
T KOG0921|consen 675 YEILPLHSQLTSQEQRKVFEPVP 697 (1282)
T ss_pred cccccchhhcccHhhhhccCccc
Confidence 34555555555555555555443
No 32
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=90.74 E-value=17 Score=42.14 Aligned_cols=300 Identities=17% Similarity=0.254 Sum_probs=170.3
Q ss_pred hHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhh----------chhHHHHH
Q 008918 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA----------EEIVERDA 124 (549)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqs----------dd~~E~~~ 124 (549)
..=||-+||.+.++-|-+.+-+-.--+..+|+.|.==|-.+|+... -.=+-+||-+++.+ +.-.=.+-
T Consensus 269 l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~--~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~F 346 (661)
T KOG2256|consen 269 LVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK--STCLDPVLKTMYLAFVRNSKFVTVNTLPLINF 346 (661)
T ss_pred HHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhCCCCCCcccchhHH
Confidence 3458889999999999999999988888999999998988997532 23366666666544 22244567
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHH
Q 008918 125 VHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGA 204 (549)
Q Consensus 125 v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~ 204 (549)
.+++|++|+.+|+...-.--|--|. ..+| .|+..+.+++++.-. .|=.-
T Consensus 347 l~~slvEL~~ld~~~~Yq~aF~yIr------------QLAi--------hLRnam~~k~K~s~~-----------~VYnW 395 (661)
T KOG2256|consen 347 LQNSLVELLGLDLQVSYQHAFVYIR------------QLAI--------HLRNAMITKNKESVQ-----------SVYNW 395 (661)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH------------HHHH--------HHHHHhhcCCHHHHH-----------HHHHH
Confidence 7889999999998876665555543 1111 122222222222211 11112
Q ss_pred HHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhc-cCCCh--hhHHHHHH
Q 008918 205 EFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFL-RGASG--SKFLNYLN 281 (549)
Q Consensus 205 EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs-~~v~s--t~f~~y~~ 281 (549)
+| +.|+..=+-.+| .+++. .+=+.|-.
T Consensus 396 qf--------------------------------------------------i~cL~lW~rvisf~~~~~s~lq~LvYpL 425 (661)
T KOG2256|consen 396 QY--------------------------------------------------VHCLDLWLRVISFANGSASQLQPLVYPL 425 (661)
T ss_pred HH--------------------------------------------------HHHHHHHHHHHHHhhccHhhhhhhhhHH
Confidence 33 233332222222 11111 11111211
Q ss_pred hhh-cccCCCCCh----hhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh--hhcCCCCCCCC-----------------
Q 008918 282 KHI-IPVFDKLPE----ERKLDLLKALAEISPYTTPQDSRQILPSVAVLL--KYMPLRKTGGE----------------- 337 (549)
Q Consensus 282 ~~v-lP~l~~l~e----~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L--~ymP~~~~~~~----------------- 337 (549)
-+| +.++.-+|- ..++..++.|--+|..||.-.+ ++|.|++.| .+.-.+|.+++
T Consensus 426 vQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~fIP--i~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L 503 (661)
T KOG2256|consen 426 VQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTFIP--LSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYL 503 (661)
T ss_pred HHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCceee--cHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHh
Confidence 111 122222222 3789999999999999887775 566677777 33333332111
Q ss_pred -------ccchHHHHHHHHHHHHhhhc--CchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHH--HHHHHHHHHH
Q 008918 338 -------EMNFTYVECLLYTFHHLAHK--APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTT--VEDLTRATMK 406 (549)
Q Consensus 338 -------~l~fS~vEcLLyafh~L~~K--~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqy--la~~~q~yik 406 (549)
.+-++.+|-|+=-||+.++. .|+... | .--+++-|..+... +.+.++..|.
T Consensus 504 ~sk~yq~~~ieqv~~lL~ey~a~~s~~IaFPELv~-----------p-------~i~rLk~f~k~skn~~~~r~v~~li~ 565 (661)
T KOG2256|consen 504 RSKAYQDGVIEQVIELLLEYFALFSKSIAFPELVL-----------P-------VIMRLKSFLKESKNGNYKRVVKQLIE 565 (661)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhH-----------H-------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13456778888888887665 454221 1 13456677666543 3566666665
Q ss_pred HHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCcccccccccC
Q 008918 407 KLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEAT 476 (549)
Q Consensus 407 kL~~~l~~~~K~~~~~k~denk~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~itlSW~~~~ 476 (549)
||.+-- .=|..++.....++....-+.+.-+++-.+- ++.+ ..--+|..++
T Consensus 566 kle~ns----------------~FV~~kR~~v~F~pnD~~~V~afe~~~~~~~-TPl~--~yy~~~rk~~ 616 (661)
T KOG2256|consen 566 KLEENS----------------KFVLEKRNKVKFSPNDQQAVSAFEQDLDWNK-TPLG--QYYSSWRKVR 616 (661)
T ss_pred HHHHHH----------------HHHHHHHhcCccCCCcHHHHHHHHHHHHccC-CcHH--HHHHHHHHHH
Confidence 554221 1112223333456666677777777777765 6665 6677887755
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.18 E-value=0.15 Score=35.36 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHhhhhccccchhHHHHHhhhcccccc
Q 008918 70 VDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (549)
Q Consensus 70 i~a~lDLcEDed~~IR~qAIk~Lp~lck 97 (549)
+..++.+++|+++.||.+|++.|..||+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999988875
No 34
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=89.97 E-value=0.34 Score=51.72 Aligned_cols=8 Identities=25% Similarity=0.621 Sum_probs=5.2
Q ss_pred cccccccC
Q 008918 469 NLSWKEAT 476 (549)
Q Consensus 469 tlSW~~~~ 476 (549)
..||.+-.
T Consensus 319 mpswqqqq 326 (465)
T KOG3973|consen 319 MPSWQQQQ 326 (465)
T ss_pred CCcHHHhc
Confidence 57887643
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.52 E-value=0.57 Score=35.91 Aligned_cols=49 Identities=31% Similarity=0.361 Sum_probs=33.7
Q ss_pred hhHHHHHhhhcccccccCcc----chhhHHHHHHHHHhhchhHHHHHHHHHHH
Q 008918 82 LGVRVQAIRGLPLFCKDTPE----YLSKIVDILVQLLAAEEIVERDAVHKALM 130 (549)
Q Consensus 82 ~~IR~qAIk~Lp~lck~~~e----~~~riaDVL~QLLqsdd~~E~~~v~~aL~ 130 (549)
+.||.+|+..|-.++...++ |++.+...|..+|+++++.++..+-.||-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 35788888888777644443 45677778888887777766666665554
No 36
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=5.4 Score=42.58 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=42.0
Q ss_pred HHHhCCCCChhh-hhhhHHHHHHHhhhcCCCCC--CCCccchHHHHHHHHHHHHhhhcCchhhhhccccccc
Q 008918 303 LAEISPYTTPQD-SRQILPSVAVLLKYMPLRKT--GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIV 371 (549)
Q Consensus 303 lAE~s~~~~~~d-a~~~l~~i~~~L~ymP~~~~--~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~ 371 (549)
-+-+.|.|++++ .++=...+..-|.|+|..+. .+|.+-=..|||++..... +..-+.+.+--+|-|+
T Consensus 221 p~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpil 290 (353)
T KOG2973|consen 221 PAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPIL 290 (353)
T ss_pred HHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHH
Confidence 355678888877 55555555555688887554 4677888999998765433 1112255555555554
No 37
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.41 E-value=28 Score=35.88 Aligned_cols=227 Identities=17% Similarity=0.242 Sum_probs=113.3
Q ss_pred cccchhHHHHHhhhccccccc-Cccchhh-HHHHHHHHHhh--chhHHHHHHHHHHHHHHhhch------HHHHHHHHHh
Q 008918 78 EEEELGVRVQAIRGLPLFCKD-TPEYLSK-IVDILVQLLAA--EEIVERDAVHKALMSLLRQDV------KASLTALFKH 147 (549)
Q Consensus 78 EDed~~IR~qAIk~Lp~lck~-~~e~~~r-iaDVL~QLLqs--dd~~E~~~v~~aL~sllk~d~------k~tL~~lf~q 147 (549)
-++|..+|..|+.-|..+... .++++++ =+-+|++.+.+ +|..-+..+=++|.+|+++.. ...+..+|++
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHh
Confidence 378899999999999887533 3344555 55677776666 666556666888888887632 3445556654
Q ss_pred hhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHH----HHHHHHHHhhccccCCCC
Q 008918 148 IGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE----FRMFMDFLKSLSLFGEKA 223 (549)
Q Consensus 148 I~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~E----F~l~m~iL~~l~~~~t~~ 223 (549)
+.. ++=--..|-.+.+.+..=+..-..++.. -..++|...|.-+=..-.+.- |.++.-++...++ .
T Consensus 89 ~~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~~---~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~--- 158 (262)
T PF14500_consen 89 VDV---QSLPQSTRYAVYQLLDSLLENHREALQS---MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-S--- 158 (262)
T ss_pred CCh---hhhhHHHHHHHHHHHHHHHHHhHHHHHh---chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-c---
Confidence 431 1111224666655544333222222210 112233322211101111111 2333333333332 1
Q ss_pred chhHHHHHHHHHHHhhhccccCCCCCh------HHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhh
Q 008918 224 PTERMKELIGIIEGQADLDAQFNVSDA------DHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKL 297 (549)
Q Consensus 224 ~~gr~qeLv~~i~eqa~Ld~~f~~sD~------e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl 297 (549)
.-..+|-+.+.-===++=.-++.|+ |-...+..|+. |-|. |-.|..-.++-+|+.=....|+
T Consensus 159 --~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~---------fa~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 159 --EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPL---------FAPFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred --hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHh---------hHHHHHHHHHHHHcCCCcHHHH
Confidence 1123344444321000000112354 44466666653 3333 3334444444444443446899
Q ss_pred hHHHHHHHhCCCCChhhhhhhHHHHHHHh
Q 008918 298 DLLKALAEISPYTTPQDSRQILPSVAVLL 326 (549)
Q Consensus 298 ~lLK~lAE~s~~~~~~da~~~l~~i~~~L 326 (549)
+.|+.|...++-=++......+..|.+.|
T Consensus 227 D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 227 DSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99999999877446666666677777766
No 38
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.40 E-value=24 Score=40.55 Aligned_cols=162 Identities=19% Similarity=0.207 Sum_probs=110.0
Q ss_pred HHHHHHHhhhhhhccccc--cChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHH--HHHHhhhhcc----ccch
Q 008918 11 IEKLYEFGERLNEAKDKS--QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSR--AVDAHLDLIE----EEEL 82 (549)
Q Consensus 11 ie~LY~~~~~L~~akd~~--~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~--Ai~a~lDLcE----Ded~ 82 (549)
.|.||..+.+- +... --.+-|...=..+..++..=+=+|....|-+|+-+.-+.. .+..++-|.- +-++
T Consensus 105 CEsLYNiaKv~---k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 105 CESLYNIAKVA---KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred HHHHHHHHHHh---ccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 56666665432 2221 2344455555577777777778899999999987755432 2333443333 5588
Q ss_pred hHHHHHhhhccccc-c---cCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---chH-----HHHHHHHHhhhc
Q 008918 83 GVRVQAIRGLPLFC-K---DTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DVK-----ASLTALFKHIGS 150 (549)
Q Consensus 83 ~IR~qAIk~Lp~lc-k---~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---d~k-----~tL~~lf~qI~~ 150 (549)
..|+.-+.=|-.+= + +-=.|++-+-|.|.++|.+.....+++.+.+|.++++- +|. .+.+.+-.|+.
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~- 260 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ- 260 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc-
Confidence 88988877654441 1 11147899999999999998888888999988887753 343 35666677776
Q ss_pred CCCCCChHHHHHHHHHHHHhhcccchhhhc
Q 008918 151 VDEPSTDEFIREKVLSFIRDKVFPLKAELL 180 (549)
Q Consensus 151 ~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~ 180 (549)
+.++.+++++|.+|.+=|..-+.+++
T Consensus 261 ----ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 261 ----SSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred ----CCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 77888999999999997755555554
No 39
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.24 E-value=16 Score=43.31 Aligned_cols=108 Identities=23% Similarity=0.306 Sum_probs=92.9
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHH
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~Q 112 (549)
|-.+|..+- -+.+.|||.==-+-+|-|.-|++.-.|+|++.+=.+|.++-||-.|||.+..+=. ++.+.-+.|-+-|
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~~~~~ik~ 134 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGNIIDPIKK 134 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHHHHHHHHH
Confidence 334444444 6789999999999999999999999999999999999999999999999988754 3778889999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhchHHHHHH
Q 008918 113 LLAAEEIVERDAVHKALMSLLRQDVKASLTA 143 (549)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~d~k~tL~~ 143 (549)
+|....+-++..|==|+..+|+.|+.=....
T Consensus 135 ~l~d~~ayVRk~Aalav~kly~ld~~l~~~~ 165 (757)
T COG5096 135 LLTDPHAYVRKTAALAVAKLYRLDKDLYHEL 165 (757)
T ss_pred HccCCcHHHHHHHHHHHHHHHhcCHhhhhcc
Confidence 9999999999999999999999988755444
No 40
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.83 E-value=3.4 Score=46.16 Aligned_cols=131 Identities=22% Similarity=0.285 Sum_probs=91.0
Q ss_pred ccchHHHHHHHHHhh--hhhhcc--cc---------------c-----cChhhHHHHHHHhcCC---HHHHHHHhhhh--
Q 008918 5 SDEAKQIEKLYEFGE--RLNEAK--DK---------------S-----QNVKDYEGIIEAAKTS---LKAKQLAAQLI-- 55 (549)
Q Consensus 5 ~~~~~~ie~LY~~~~--~L~~ak--d~---------------~-----~~~~~Y~~Il~~~kg~---~k~K~LaaQfI-- 55 (549)
=||..-|++||..|- .+.... .. | ....--+.+.++..|+ .+.|.++-|||
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~ 347 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRG 347 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhc
Confidence 477888999999997 211110 00 0 1112233344455544 89999999999
Q ss_pred -HHhhccCccc-----hHHHHHHhhhhcc--------ccchhHHHHHhhhcccccccCccchhhHHHHHHHH---Hhhch
Q 008918 56 -PRFFKFFPDL-----SSRAVDAHLDLIE--------EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL---LAAEE 118 (549)
Q Consensus 56 -~kffk~FP~L-----~e~Ai~a~lDLcE--------Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QL---Lqsdd 118 (549)
..=+++++.- ..--++....+.+ .++...|-.||..|-.|++..|..+.+-.+++..| |..|+
T Consensus 348 ~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~ 427 (501)
T PF13001_consen 348 SSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDES 427 (501)
T ss_pred chHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcc
Confidence 9999999874 4555566667773 25677899999999999999998886655555544 44577
Q ss_pred hHHHHHHHHHHHHHHhh
Q 008918 119 IVERDAVHKALMSLLRQ 135 (549)
Q Consensus 119 ~~E~~~v~~aL~sllk~ 135 (549)
+.-+..+..||.++...
T Consensus 428 ~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 428 PEVRVSIQEALSSLAPA 444 (501)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78888999998887655
No 41
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=88.71 E-value=0.33 Score=43.75 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=10.4
Q ss_pred hhhhhcCCCCccC
Q 008918 452 SKPLHSKTPSFIG 464 (549)
Q Consensus 452 i~~L~~~pPsf~~ 464 (549)
+-|+++|.|.|+.
T Consensus 73 lPdmLKnAPmFkk 85 (119)
T KOG3172|consen 73 LPDMLKNAPMFKK 85 (119)
T ss_pred CchHhhcCccccc
Confidence 4788888899984
No 42
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=88.58 E-value=34 Score=40.55 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=78.3
Q ss_pred HhcCCHHHHHHHhhhhHHhhcc-----------------CccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc
Q 008918 40 AAKTSLKAKQLAAQLIPRFFKF-----------------FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY 102 (549)
Q Consensus 40 ~~kg~~k~K~LaaQfI~kffk~-----------------FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~ 102 (549)
-+|+.+.+=.||.-.|-+=|+| -|++.+.+++++.++.+|..+.||+.|+=++-.+-+-++++
T Consensus 82 yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l 161 (757)
T COG5096 82 YAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL 161 (757)
T ss_pred HhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh
Confidence 3444445555555555544443 47788999999999999999999999999999998777787
Q ss_pred hhh--HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH---HHHHHHHHhhh
Q 008918 103 LSK--IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK---ASLTALFKHIG 149 (549)
Q Consensus 103 ~~r--iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k---~tL~~lf~qI~ 149 (549)
+.- ..|+|.-|+.+.||.. +.+||.++..+||. +-++.++.+|.
T Consensus 162 ~~~~g~~~~l~~l~~D~dP~V---i~nAl~sl~~i~~e~a~~~~~~~~~~i~ 210 (757)
T COG5096 162 YHELGLIDILKELVADSDPIV---IANALASLAEIDPELAHGYSLEVILRIP 210 (757)
T ss_pred hhcccHHHHHHHHhhCCCchH---HHHHHHHHHHhchhhhhhHHHHHHHHhh
Confidence 777 4777777777777764 56677777777766 55556666664
No 43
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=88.43 E-value=5.8 Score=38.61 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=67.7
Q ss_pred HHHHHHHhhhhHHhhc----cCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhH-HHHHHHHHhhchh
Q 008918 45 LKAKQLAAQLIPRFFK----FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-VDILVQLLAAEEI 119 (549)
Q Consensus 45 ~k~K~LaaQfI~kffk----~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ri-aDVL~QLLqsdd~ 119 (549)
.++=+.|.++|...+. +|....+..+..+++.|.|....||..|...|-.+|...+ +.+++ ..+|.+.+..-.+
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNP 145 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCH
Confidence 3444566666666554 5666688999999999999999999999999999998765 66787 9999999999999
Q ss_pred HHHHHHHHHHHHHHhhch
Q 008918 120 VERDAVHKALMSLLRQDV 137 (549)
Q Consensus 120 ~E~~~v~~aL~sllk~d~ 137 (549)
..+..+-+.|..++..-+
T Consensus 146 ~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 999999998888888766
No 44
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.94 E-value=14 Score=40.46 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=43.8
Q ss_pred cCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHH
Q 008918 287 VFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTF 351 (549)
Q Consensus 287 ~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyaf 351 (549)
+|=......+.-+|..+.++...+.+++...+...++..| ..+- +.+|..+|-.||.+
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~-------S~h~qVAErAl~~w 321 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCIS-------SPHFQVAERALYFW 321 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHT-------SSSHHHHHHHHGGG
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 3333345788999999999999999999999999999999 8884 36777788777654
No 45
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.42 E-value=6.7 Score=44.01 Aligned_cols=130 Identities=20% Similarity=0.154 Sum_probs=83.7
Q ss_pred chHHHHHHHHHhhh--------hhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhcc
Q 008918 7 EAKQIEKLYEFGER--------LNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE 78 (549)
Q Consensus 7 ~~~~ie~LY~~~~~--------L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcE 78 (549)
+.+.|+.||+.... +=||--.+...++++.|.+..+...-.-.-|++++..-..+-|.-..+.++.+++||+
T Consensus 324 ~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~ 403 (574)
T smart00638 324 SEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAE 403 (574)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhc
Confidence 44567777776532 2344334455666777766666443333457888887777777778999999999999
Q ss_pred cc----chhHHHHHhhhcccc----cccCc--------cchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc
Q 008918 79 EE----ELGVRVQAIRGLPLF----CKDTP--------EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD 136 (549)
Q Consensus 79 De----d~~IR~qAIk~Lp~l----ck~~~--------e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d 136 (549)
++ .+.+|..|+=++-.+ |.+++ +|++.+.+-|.+..+..+..|..+.-+||=.+=...
T Consensus 404 ~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~ 477 (574)
T smart00638 404 SPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS 477 (574)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh
Confidence 64 456888888888876 76663 344444444444444456667777766666444433
No 46
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.37 E-value=0.64 Score=42.84 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=45.3
Q ss_pred CHHHHHHHhhhhHHhhccCccch-----HHHHHHhhhhccccchhHHHHHhhhcccccccCc
Q 008918 44 SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP 100 (549)
Q Consensus 44 ~~k~K~LaaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~ 100 (549)
++.+--.|+.=|..|.+++|... -.|-..++.|...+|+.||.+|++.+-.+--.||
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w 118 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNW 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS-
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 78888899999999999999973 3456788999999999999999998876655444
No 47
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=87.24 E-value=33 Score=40.49 Aligned_cols=134 Identities=16% Similarity=0.276 Sum_probs=73.1
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHh--hhhh----ccCCChhhHHHHH
Q 008918 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA--LPFF----LRGASGSKFLNYL 280 (549)
Q Consensus 207 ~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~A--lp~f----s~~v~st~f~~y~ 280 (549)
.++|.+++.+....... + .-+++++..-+++=. ..| .-|-+++|+-.. ++.. ..-.....|+.|+
T Consensus 468 ~lLlKlIRNiS~h~~~~---k-~~f~~~i~~L~~~v~---~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L 538 (708)
T PF05804_consen 468 PLLLKLIRNISQHDGPL---K-ELFVDFIGDLAKIVS---SGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWL 538 (708)
T ss_pred HHHHHHHHHHHhcCchH---H-HHHHHHHHHHHHHhh---cCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHH
Confidence 45666777766666533 1 224455544333211 111 124555555443 2211 1112235667777
Q ss_pred HhhhcccCCCCChhhhhhHHHHHHHhCCC--CChhh-hhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHHHHhhh
Q 008918 281 NKHIIPVFDKLPEERKLDLLKALAEISPY--TTPQD-SRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTFHHLAH 356 (549)
Q Consensus 281 ~~~vlP~l~~l~e~~kl~lLK~lAE~s~~--~~~~d-a~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh~L~~ 356 (549)
.+.+.|... .+|..|++.-.+.-+|.. |...- ...+++.++++| .+.-+ . -+|==++|+|++|.+
T Consensus 539 ~~~L~~g~~--~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeD-----d----E~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 539 KDLLKPGAS--EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQED-----D----EIVLQILYVFYQLLF 607 (708)
T ss_pred HHHhCCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCch-----H----HHHHHHHHHHHHHHc
Confidence 777777433 357888988888877652 11111 234578888888 76532 2 234457899999988
Q ss_pred cCch
Q 008918 357 KAPN 360 (549)
Q Consensus 357 K~P~ 360 (549)
+.+.
T Consensus 608 h~~t 611 (708)
T PF05804_consen 608 HEET 611 (708)
T ss_pred ChHH
Confidence 8554
No 48
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=6.1 Score=46.17 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=101.2
Q ss_pred ccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH---HHHHHHHhhhcCCCCC
Q 008918 79 EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA---SLTALFKHIGSVDEPS 155 (549)
Q Consensus 79 Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~---tL~~lf~qI~~~~e~~ 155 (549)
+-|++.=.+|||.|..+...-.++ .+.+|+|.+++.+...-.++.+...+..+++--|.. ....++..+.+ -
T Consensus 361 evD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~s----l 435 (734)
T KOG1061|consen 361 EVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDS----L 435 (734)
T ss_pred hhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccc----c
Confidence 888998889999999998666666 889999999999988877777777788888877765 55555555543 3
Q ss_pred ChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHH
Q 008918 156 TDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGII 235 (549)
Q Consensus 156 ~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i 235 (549)
+|+..|--++=.|....--+ +++.+++-..++-.-+.+...-+.+++..++.+=...+ +- |++++-+
T Consensus 436 ~epeak~amiWilg~y~~~i--------~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~----~t-q~~l~~v 502 (734)
T KOG1061|consen 436 QEPEAKAALIWILGEYAERI--------ENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT----ET-QELLQGV 502 (734)
T ss_pred CChHHHHHHHHHHhhhhhcc--------CcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc----cH-HHHHHHH
Confidence 34445554443333333222 24555555555444444455566777777665444432 22 6677555
Q ss_pred HHhhhccccCCCCChHHHHHHHH
Q 008918 236 EGQADLDAQFNVSDADHIDRLIS 258 (549)
Q Consensus 236 ~eqa~Ld~~f~~sD~e~idRli~ 258 (549)
..- ..=+..|+|-.||.+-
T Consensus 503 L~~----~~~d~~~~dlrDr~l~ 521 (734)
T KOG1061|consen 503 LPL----ATADTDNPDLRDRGLI 521 (734)
T ss_pred Hhh----hhccccChhhhhhHHH
Confidence 432 1223566777888764
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=86.64 E-value=60 Score=36.42 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=71.8
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchH----HHHHHhhhhccccchhHHHHHhhhcccccccCccch
Q 008918 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~ 103 (549)
...+-|..|+.... ++..+..-|+..|.+..++.+.++. ..+..+.+++...+..||..++--+..+|+..++..
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 45667999999888 8899999999999999998777742 126778888877677899999999999999988887
Q ss_pred hhHHH--HHHHHHh---hchh
Q 008918 104 SKIVD--ILVQLLA---AEEI 119 (549)
Q Consensus 104 ~riaD--VL~QLLq---sdd~ 119 (549)
..+.+ +|-+++. +||.
T Consensus 196 ~~~~~sgll~~ll~eL~~dDi 216 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDI 216 (503)
T ss_pred HHHHhccHHHHHHHHhcCccH
Confidence 77665 5555444 4554
No 50
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.48 E-value=0.97 Score=39.86 Aligned_cols=71 Identities=24% Similarity=0.277 Sum_probs=53.5
Q ss_pred ccchHHHHHHhhhhccccchhHHHHHhhhcccccccCcc----chhhHHHHHHHHHhhchhHHHHHHHHHHHHHHh
Q 008918 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLR 134 (549)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e----~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (549)
+...++-|.-++....|+|.-||-.|...|-.++|...+ |...|=|+|..++.+-|+.++..+ ..|..++|
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 334457788899999999999999999999999865433 356688888888888777766666 44444443
No 51
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=86.19 E-value=4.1 Score=38.74 Aligned_cols=115 Identities=24% Similarity=0.212 Sum_probs=93.3
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHH
Q 008918 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (549)
Q Consensus 29 ~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaD 108 (549)
.+.+.|...|..+..-.-.=.+|+.++..+....|.+ ..+.....+++.=+|..|+-.+-.+.++ ..++..+-+
T Consensus 71 ~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~-----~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~ 144 (197)
T cd06561 71 EDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPEL-----DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLE 144 (197)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcch-----HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 5666777777744555666678888888888777776 6677888899999999998888777765 356888999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhh
Q 008918 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (549)
Q Consensus 109 VL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~ 149 (549)
++..++.+++.-..-+|-++|.++.+.+|..++.-+-.+..
T Consensus 145 ~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~~ 185 (197)
T cd06561 145 IIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNGL 185 (197)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877666543
No 52
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.01 E-value=11 Score=43.66 Aligned_cols=261 Identities=17% Similarity=0.218 Sum_probs=136.6
Q ss_pred HHHHHHhhhhccccchhHHHHHhhhcccc------cccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHH
Q 008918 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLF------CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKAS 140 (549)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAIk~Lp~l------ck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~t 140 (549)
...+...+.+.-.-.+.||++|.+-...| |-+. +.+.+..-||+.-|..|+|..+-.|-+|+.++++..--..
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 35667778888888999999998766655 5444 4588999999999999999999999999999887632221
Q ss_pred HHHHHHhhhcCCCC---CChHHHHHHHHHHHHhhcccchhhhcC-----------------ChHHHHHHHHHHHHHhccc
Q 008918 141 LTALFKHIGSVDEP---STDEFIREKVLSFIRDKVFPLKAELLK-----------------PQEEMERHITDLIKKSLED 200 (549)
Q Consensus 141 L~~lf~qI~~~~e~---~~eE~vREr~l~Fl~~kl~~l~~e~~~-----------------~~eE~Ee~i~~~ikKvL~d 200 (549)
+.-=.++|.+.=.| +-.+-+-+-.|+|+-. +....++++. |++|+.+-.++-+--+-..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~-I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGT-ICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHH-HHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 11112233221111 1122334445555543 2222334443 3333333222221111112
Q ss_pred ccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHH--HhhhccccCCC-----CChHHHHHHH-HHHHHhhhhhccCC-
Q 008918 201 VTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIE--GQADLDAQFNV-----SDADHIDRLI-SCLYMALPFFLRGA- 271 (549)
Q Consensus 201 VT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~--eqa~Ld~~f~~-----sD~e~idRli-~cl~~Alp~fs~~v- 271 (549)
+-+.| .+--+|..|+. ++|++.....+. =-|+-..+|++ +|-++=+-.. +-+-.|+-||-...
T Consensus 761 iGPqd--vL~~LlnnLkv------qeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 761 IGPQD--VLDILLNNLKV------QERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred cCHHH--HHHHHHhcchH------HHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 22222 24444555554 255444332221 11334555653 2222112111 12223444432211
Q ss_pred C-hhhHHHHHHhhhcccCCCC--Ch---hh--hhhHHHHHHHhCCCCChhhh-hhhHHHHHHHh-hhcCCCCCCCCccch
Q 008918 272 S-GSKFLNYLNKHIIPVFDKL--PE---ER--KLDLLKALAEISPYTTPQDS-RQILPSVAVLL-KYMPLRKTGGEEMNF 341 (549)
Q Consensus 272 ~-st~f~~y~~~~vlP~l~~l--~e---~~--kl~lLK~lAE~s~~~~~~da-~~~l~~i~~~L-~ymP~~~~~~~~l~f 341 (549)
. |-+|+. .|+|.+++. ++ .+ -.++.+.|+.-|+-++.+|+ --+++.+...+ +-. |-..-
T Consensus 833 ~~s~dYvy----~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~s-------Phvi~ 901 (975)
T COG5181 833 QASLDYVY----SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPS-------PHVIQ 901 (975)
T ss_pred HHHHHHHH----HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCC-------cHHHH
Confidence 1 222222 467888776 22 34 45999999999998888885 33444443333 333 34667
Q ss_pred HHHHHHH
Q 008918 342 TYVECLL 348 (549)
Q Consensus 342 S~vEcLL 348 (549)
+..||+=
T Consensus 902 ~~~Eg~e 908 (975)
T COG5181 902 SFDEGME 908 (975)
T ss_pred HHHHHHH
Confidence 7778763
No 53
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=85.49 E-value=14 Score=39.38 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=92.5
Q ss_pred HHHHHH-HHHhhhhhhccccccChhhH-HHHHHHhcCCHHHHHHHhhhhHH-hhc-cCccchHHHHHHhhhhccccchhH
Q 008918 9 KQIEKL-YEFGERLNEAKDKSQNVKDY-EGIIEAAKTSLKAKQLAAQLIPR-FFK-FFPDLSSRAVDAHLDLIEEEELGV 84 (549)
Q Consensus 9 ~~ie~L-Y~~~~~L~~akd~~~~~~~Y-~~Il~~~kg~~k~K~LaaQfI~k-ffk-~FP~L~e~Ai~a~lDLcEDed~~I 84 (549)
+.++.+ .+|+..+...+.-.....+| +.+|..+-|..+++.+-..+-+. -.+ .|..|+.---..+.+++.+|-||+
T Consensus 55 ~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~~~~~~~~~L~~~~~~~la~~l~~EhPQ~ 134 (338)
T TIGR00207 55 QQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGFEFLRKAEPQQIADFIQQEHPQT 134 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchhHHHHCCCHHHHHHHHHccCHHH
Confidence 344444 56666665443333566777 89999999988888776655443 234 377777666778889999998873
Q ss_pred ------------------------HHHHhhhcccccccCccchhhHHHHHHHHHhhc--hhHHHHHHHHHHHHHHhhchH
Q 008918 85 ------------------------RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE--EIVERDAVHKALMSLLRQDVK 138 (549)
Q Consensus 85 ------------------------R~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~d~k 138 (549)
|..-+..+..+-.=.|+-+..|.++|-+-+..- ......-+ +.+..++..=++
T Consensus 135 iAliLs~L~p~~AA~VL~~Lp~~~~~ei~~ria~l~~vs~~~i~~ie~~L~~~~~~~~~~~~~~gG~-~~~a~ILN~~~~ 213 (338)
T TIGR00207 135 IALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGKLDSLNSDYTKMGGV-RAVAEIINLMDR 213 (338)
T ss_pred HHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccccccCChH-HHHHHHHHhCCc
Confidence 333344444444444555666666666555421 11122222 334566666666
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 008918 139 ASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 139 ~tL~~lf~qI~~~~e~~~eE~vREr~l~F 167 (549)
.+-..++..|.. ..|.--+.+|+++..|
T Consensus 214 ~~~~~il~~L~~-~dp~la~~Ir~~mF~F 241 (338)
T TIGR00207 214 KTEKTIITSLEE-FDPELAEEIKKEMFVF 241 (338)
T ss_pred hHHHHHHHHHHH-hCHHHHHHHHHHccCH
Confidence 677777777752 1222233467777777
No 54
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=85.03 E-value=4.8 Score=41.38 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=80.1
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc--hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHH
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL 110 (549)
...+|+.++ +..+++-+.+.-..-.|....+. .--++.-+.++..+.++.||.+|+..|-.++-+. |...+|-..+
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~Ik~~i 95 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQIKMYI 95 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHHHHHHH
Confidence 334444444 55677777776665554444444 2245677889999999999999999999997442 4445566666
Q ss_pred HHHHhh---c-hhHHH-HHHHHHHHHHHhhc-----hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 111 VQLLAA---E-EIVER-DAVHKALMSLLRQD-----VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 111 ~QLLqs---d-d~~E~-~~v~~aL~sllk~d-----~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
.|++.. . -.+++ .+.-+.|.++--.+ -...+..+|.-+. +|++.+|..+++.|.
T Consensus 96 ~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~-----~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 96 PQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS-----SGSEKTKVQVLKVLV 159 (254)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH-----cCChHHHHHHHHHHH
Confidence 666552 2 12333 33334444442222 1345667776666 777888888888765
No 55
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=84.50 E-value=2.6 Score=40.59 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=65.9
Q ss_pred HHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008918 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (549)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~ 146 (549)
+.+..-+...++++++=+|..|+-.+-.+.+. ++...+-+++..++.+++.-...+|-.+|.++.+.||.-++.-|=.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34566677788899999999999998888776 7788999999999999999999999999999999999887776665
Q ss_pred hh
Q 008918 147 HI 148 (549)
Q Consensus 147 qI 148 (549)
+.
T Consensus 197 ~~ 198 (213)
T PF08713_consen 197 NS 198 (213)
T ss_dssp S-
T ss_pred Cc
Confidence 44
No 56
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=84.36 E-value=1.3 Score=33.86 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHhhhhHHhhccCcc----chHHHHHHhhhhccccchhHHHHHhhhcccc
Q 008918 46 KAKQLAAQLIPRFFKFFPD----LSSRAVDAHLDLIEEEELGVRVQAIRGLPLF 95 (549)
Q Consensus 46 k~K~LaaQfI~kffk~FP~----L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~l 95 (549)
.++.-|+..|...-..-|+ ...+++..++++.+|++..||.+|...|-+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4556677777654434444 4678999999999999999999999887543
No 57
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.05 E-value=64 Score=37.94 Aligned_cols=235 Identities=17% Similarity=0.134 Sum_probs=123.2
Q ss_pred HHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---chHHHHHHHHHh
Q 008918 71 DAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DVKASLTALFKH 147 (549)
Q Consensus 71 ~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---d~k~tL~~lf~q 147 (549)
-|++-=.|||=-.||++||-.+=.|....|.+-.+--|.|+-|+++|..+++.-+-++|--+-.. + ..-|..++.-
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~-eeql~~il~~ 454 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR-EEQLRQILES 454 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec-HHHHHHHHHH
Confidence 35566678999999999999999999999999999999999999999998888777776554433 1 2233444444
Q ss_pred hhcCCCCCChHHHHHHHHHHHHh-hcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchh
Q 008918 148 IGSVDEPSTDEFIREKVLSFIRD-KVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTE 226 (549)
Q Consensus 148 I~~~~e~~~eE~vREr~l~Fl~~-kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~g 226 (549)
|. .....+|+-+...|+. ++-+ .+.-+..+..+-|+|..-+-++= ++++++-.++.+++.
T Consensus 455 L~-----D~s~dvRe~l~elL~~~~~~d---------~~~i~m~v~~lL~~L~kyPqDrd----~i~~cm~~iGqnH~~- 515 (823)
T KOG2259|consen 455 LE-----DRSVDVREALRELLKNARVSD---------LECIDMCVAHLLKNLGKYPQDRD----EILRCMGRIGQNHRR- 515 (823)
T ss_pred HH-----hcCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHHhhhCCCCcH----HHHHHHHHHhccChh-
Confidence 43 2234466666666554 3322 23333333333344332221111 345555556555532
Q ss_pred HHHHHHHHHHHhhhcccc--CCCCChHHHHHHHHHHHHhh--hhh-ccCCCh-hhHHHHHHhhhcccCCC-CChhhhhhH
Q 008918 227 RMKELIGIIEGQADLDAQ--FNVSDADHIDRLISCLYMAL--PFF-LRGASG-SKFLNYLNKHIIPVFDK-LPEERKLDL 299 (549)
Q Consensus 227 r~qeLv~~i~eqa~Ld~~--f~~sD~e~idRli~cl~~Al--p~f-s~~v~s-t~f~~y~~~~vlP~l~~-l~e~~kl~l 299 (549)
-++-.+.-+.+....=.. -...|.+++-.+|=-+..|. |-+ +.-... +.++.|+ .+--|.+-. +|.+.....
T Consensus 516 lv~s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~hrhla~L-r~sspnLv~~~pi~~ld~~ 594 (823)
T KOG2259|consen 516 LVLSNMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAHHRHLAIL-RCSSPNLVGDGPIFFLDIL 594 (823)
T ss_pred hHHHHHHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHHHHHHHHH-hccCCCCCCccchHHHHHH
Confidence 122233333332111111 12357778877775443332 111 111111 2333333 344554433 354444444
Q ss_pred HHHHHHhCCCCChh-hhhhhHHHHHHHh
Q 008918 300 LKALAEISPYTTPQ-DSRQILPSVAVLL 326 (549)
Q Consensus 300 LK~lAE~s~~~~~~-da~~~l~~i~~~L 326 (549)
...++..++--.++ .++.++-..|.-.
T Consensus 595 ~q~~ri~ssd~~te~~ae~vfm~~yr~~ 622 (823)
T KOG2259|consen 595 CQFLRIKSSDGETERQAEKVFMRMYRED 622 (823)
T ss_pred HHHhhhhcccccchhhHHHHHHHHHhhc
Confidence 44444444433332 2555554444333
No 58
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=83.96 E-value=16 Score=40.96 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=58.1
Q ss_pred HHHHHhhhhccc-cchhHHHHHhhhcccccccCccchhhHHH-HHHHHHhh----chhHHHHHHHHHHHHHHhhchHHHH
Q 008918 68 RAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSKIVD-ILVQLLAA----EEIVERDAVHKALMSLLRQDVKASL 141 (549)
Q Consensus 68 ~Ai~a~lDLcED-ed~~IR~qAIk~Lp~lck~~~e~~~riaD-VL~QLLqs----dd~~E~~~v~~aL~sllk~d~k~tL 141 (549)
+-+..+++...| +|..+++-|.|-|-.+|+.+|.-+-.-+- +.+.+|.. .+.+...++.-++..+-..+|-.-+
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I 408 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI 408 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH
Confidence 556677788888 89999999999999999998843222111 22334433 5667777777777777777888777
Q ss_pred HHHHHhhh
Q 008918 142 TALFKHIG 149 (549)
Q Consensus 142 ~~lf~qI~ 149 (549)
..+.--|.
T Consensus 409 ~~i~~~Il 416 (516)
T KOG2956|consen 409 VNISPLIL 416 (516)
T ss_pred HHHhhHHh
Confidence 77777776
No 59
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=83.85 E-value=0.62 Score=50.19 Aligned_cols=31 Identities=42% Similarity=0.700 Sum_probs=15.8
Q ss_pred hhhhhhhhcCCC--CCCC--CCCCCcccCCCCCCCCC
Q 008918 514 NQLVNRALEGIS--RGGR--GGIRGRGRGWGARGRGR 546 (549)
Q Consensus 514 ~~~~~~~~~g~~--~~~~--~g~rgrgr~~g~rgr~~ 546 (549)
.++|....|+++ +++. +|.||||| ||||+|.
T Consensus 307 ~~vf~k~~n~~~~~~~~~~~~~~RgrGr--GgRg~gg 341 (365)
T KOG2945|consen 307 INVFDKPANFNSDRLEGNGGGGPRGRGR--GGRGEGG 341 (365)
T ss_pred hheeeccccccccccccCCCCCCccCCC--CCCCCCC
Confidence 455666666664 2222 34444444 6666554
No 60
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.38 E-value=8.2 Score=44.83 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=50.6
Q ss_pred hhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHH-HHHHHHHhhchhHHHHHH
Q 008918 52 AQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV-DILVQLLAAEEIVERDAV 125 (549)
Q Consensus 52 aQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ria-DVL~QLLqsdd~~E~~~v 125 (549)
--++..+-+..|.-.+-|..++.+||.|.|..||.+|+++|-.|...-+ +++.. --.+.+|.+|+...+.++
T Consensus 182 ~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L~~~~Y~~A~~~lsD~~e~VR~aA 254 (823)
T KOG2259|consen 182 HLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--LSKACYSRAVKHLSDDYEDVRKAA 254 (823)
T ss_pred hhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc--ccHHHHHHHHHHhcchHHHHHHHH
Confidence 3456667777777899999999999999999999999999999985321 33322 222344555555554444
No 61
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=82.63 E-value=40 Score=31.57 Aligned_cols=166 Identities=22% Similarity=0.262 Sum_probs=85.7
Q ss_pred HhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhh
Q 008918 196 KSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSK 275 (549)
Q Consensus 196 KvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~ 275 (549)
..+..+|..-|+.+.+=+..+.. . .+..+ ..++..+.+.+--.. .....+-+++.-+....|- -...
T Consensus 6 ~~lnkLs~~n~~~~~~~l~~~~~-~--~~~~~-~~l~~~i~~~~~~~~----~~~~~ya~L~~~l~~~~~~-----f~~~ 72 (200)
T smart00543 6 GLINKLSPSNFESIIKELLKLNN-S--DKNLR-KYILELIFEKAVEEP----NFIPAYARLCALLNAKNPD-----FGSL 72 (200)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHc-c--CHHHH-HHHHHHHHHHHHcCc----chHHHHHHHHHHHHHHHHH-----HHHH
Confidence 33444555555444333333332 1 12223 667777776654332 2234456666555544431 2244
Q ss_pred HHHHHHhhhcccCCCCCh---hhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHhhhcCCCCCCCCccchHHHHHHHHHHH
Q 008918 276 FLNYLNKHIIPVFDKLPE---ERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFH 352 (549)
Q Consensus 276 f~~y~~~~vlP~l~~l~e---~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L~ymP~~~~~~~~l~fS~vEcLLyafh 352 (549)
+++++.+.+-..++.... .....+++.++|+-.| +......++..+..++... .++ .+.-+...|||++..+.
T Consensus 73 ll~~~~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~-~~i~~~~i~~~l~~ll~~~-~~~--~~~~~~~~ve~l~~lL~ 148 (200)
T smart00543 73 LLERLQEEFEKGLESEEESDKQRRLGLVRFLGELYNF-QVLTSKIILELLKELLNDL-TKL--DPPRSDFSVECLLSLLP 148 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHc-ccCcHHHHHHHHHHHHhcc-CCC--CCCCcHHHHHHHHHHHH
Confidence 555555544332222211 3567889999999664 3333333455555555221 111 22356779999999998
Q ss_pred HhhhcCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHH
Q 008918 353 HLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVE 398 (549)
Q Consensus 353 ~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla 398 (549)
. ||+.+..+ ++ ++.+++|..+++..-
T Consensus 149 ~------------~G~~l~~~-------~~-~~~~~~~l~~l~~~~ 174 (200)
T smart00543 149 T------------CGKDLERE-------KS-PKLLDEILERLQDYL 174 (200)
T ss_pred H------------hhHHHcCc-------cc-HHHHHHHHHHHHHHH
Confidence 8 44444420 12 567788887777654
No 62
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.10 E-value=23 Score=41.61 Aligned_cols=101 Identities=27% Similarity=0.391 Sum_probs=79.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhhHHhhccCccchH--HHHHHhhhhccccchhHHHHHhhhcccccccCccc----------
Q 008918 35 EGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSS--RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY---------- 102 (549)
Q Consensus 35 ~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e--~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~---------- 102 (549)
-.||-+....+-+|+=||=-+-+.|+.+||+.. +=+..++-|..|.+-.|-.+|+-=|--|||.+|++
T Consensus 152 ~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs 231 (938)
T KOG1077|consen 152 PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVS 231 (938)
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHH
Confidence 356666667788999999999999999999954 57888999999999999888888888888888776
Q ss_pred -hhhHHHH---------------------HHHHHhh----chhHHHHHHHHHHHHHHhh
Q 008918 103 -LSKIVDI---------------------LVQLLAA----EEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 103 -~~riaDV---------------------L~QLLqs----dd~~E~~~v~~aL~sllk~ 135 (549)
++||+=+ |+-+||- ||+..+....+.|..+|.-
T Consensus 232 ~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk 290 (938)
T KOG1077|consen 232 RLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNK 290 (938)
T ss_pred HHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhc
Confidence 2333211 3455554 8888888888888888754
No 63
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=80.81 E-value=0.9 Score=41.11 Aligned_cols=16 Identities=75% Similarity=1.238 Sum_probs=6.7
Q ss_pred CCCCcccCCCCCCCCCC
Q 008918 531 GIRGRGRGWGARGRGRG 547 (549)
Q Consensus 531 g~rgrgr~~g~rgr~~~ 547 (549)
.+|||||| +|||||+|
T Consensus 94 ~~rgrgrg-~Grg~~~g 109 (109)
T KOG3428|consen 94 VGRGRGRG-RGRGRGRG 109 (109)
T ss_pred cccccccc-cccCCCCC
Confidence 44444444 33334443
No 64
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=79.58 E-value=14 Score=34.87 Aligned_cols=128 Identities=22% Similarity=0.285 Sum_probs=76.6
Q ss_pred hhccCccc-----hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 008918 58 FFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (549)
Q Consensus 58 ffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sl 132 (549)
.|..|++. +++--+.+++|+.+.|+.|++.|++.|-..=. .++.+-.|-|..||...
T Consensus 2 lfakf~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L~~Lldd~--------------- 63 (141)
T PF07539_consen 2 LFAKFKNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNLENLLDDK--------------- 63 (141)
T ss_pred hHhhcCCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHHHHHcCcc---------------
Confidence 35556665 78888999999999999999999999887643 47888889998888642
Q ss_pred HhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHH----HHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHH
Q 008918 133 LRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS----FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRM 208 (549)
Q Consensus 133 lk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~----Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l 208 (549)
-.+..|+.+.. +.++..=++.=|+.++- -|-.|+..-+..-. +.... -..|-..|...+.+|+..
T Consensus 64 ---~frdeL~~f~~---~~~~~~I~~ehR~~l~pvvlRILygk~~~~~~~~~--~~~~r---R~aIL~~L~~l~~~El~~ 132 (141)
T PF07539_consen 64 ---TFRDELTTFNL---SDESSVIEEEHRPELMPVVLRILYGKMQSRKGSGS--KKASR---RAAILRFLAGLSEEELGL 132 (141)
T ss_pred ---hHHHHHHhhcc---cCCcCCCCHHHHhHHHHHHHHHHHHHHhhcCCCCC--cchHH---HHHHHHHHhCCCHHHHHH
Confidence 12333333221 11111111233444444 34445544322221 11111 123445677788888888
Q ss_pred HHHHHh
Q 008918 209 FMDFLK 214 (549)
Q Consensus 209 ~m~iL~ 214 (549)
|++++-
T Consensus 133 Fl~l~~ 138 (141)
T PF07539_consen 133 FLDLML 138 (141)
T ss_pred HHHHHh
Confidence 887753
No 65
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.46 E-value=11 Score=42.48 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=58.7
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhcccc---chhHHHHHhhhcccccccCccchhhHHHHHHHHHhh-ch
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE---ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EE 118 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDe---d~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqs-dd 118 (549)
++...+.++=+-|..-- ...+++.+..++++. +..||++||.+|..+.+..| .++-++|.+++.. .+
T Consensus 502 ~~~~~~~~~LkaLgN~g------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~~v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLG------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---EKVREILLPIFMNTTE 572 (618)
T ss_dssp T-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---HHHHHHHHHHHH-TTS
T ss_pred cCHHHHHHHHHHhhccC------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---HHHHHHHHHHhcCCCC
Confidence 44455544444443321 135788888888887 67899999999998865444 4799999998766 56
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008918 119 IVERDAVHKALMSLLRQDVKASLTALFKHI 148 (549)
Q Consensus 119 ~~E~~~v~~aL~sllk~d~k~tL~~lf~qI 148 (549)
+.|+-++ |+..|++.+|-..+-..+.+.
T Consensus 573 ~~EvRia--A~~~lm~~~P~~~~l~~i~~~ 600 (618)
T PF01347_consen 573 DPEVRIA--AYLILMRCNPSPSVLQRIAQS 600 (618)
T ss_dssp -HHHHHH--HHHHHHHT---HHHHHHHHHH
T ss_pred ChhHHHH--HHHHHHhcCCCHHHHHHHHHH
Confidence 6665554 688888887765443333333
No 66
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.28 E-value=1e+02 Score=36.66 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=74.8
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc----hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHH
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ria 107 (549)
-|.-+|.++. .+.++.-=..|.|++---.--.. .+.-+.+++.=.-|.++.||+||+..|..+=.+..+===+|+
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~ 165 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVV 165 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHH
Confidence 3666777777 77788878889998887633333 344444555556699999999999999998633222223588
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHh
Q 008918 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~q 147 (549)
-+|.-++|-|-+.|+ +.|.++-+..|+. |+.-+.--
T Consensus 166 n~l~~liqnDpS~EV---RRaaLsnI~vdns-Tlp~IveR 201 (892)
T KOG2025|consen 166 NLLKDLIQNDPSDEV---RRAALSNISVDNS-TLPCIVER 201 (892)
T ss_pred HHHHHHHhcCCcHHH---HHHHHHhhccCcc-cchhHHHH
Confidence 888888888888774 5555666655543 45544443
No 67
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.19 E-value=24 Score=43.19 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=90.6
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccch-----hhHHHHHHHHHhh-chhHHHHHHHHHHHHHHhhchHH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-----SKIVDILVQLLAA-EEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~-----~riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~d~k~ 139 (549)
-++.++..+-...|.++-||-+|...|.+++.|=.-.+ .++-+-|...|-+ +.+.+-.++-.||+.++--.++.
T Consensus 387 l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 35677888889999999999999999999986644433 4466666676666 44477788889999999999999
Q ss_pred HHHHHHHhhhcC----CCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHH
Q 008918 140 SLTALFKHIGSV----DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF 209 (549)
Q Consensus 140 tL~~lf~qI~~~----~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~ 209 (549)
-+...+.+|... =..++-..+||-+++=|..--.......+ .-=+.+...++++|+..+.+|+..+
T Consensus 467 ~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~----pY~d~~Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 467 ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI----PYFDRLMPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH----hHHHHHHHHHHHHHhCCCchhhHHH
Confidence 999988888720 01122233455444332221111000000 1134456677788887777777543
No 68
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=79.06 E-value=1.1e+02 Score=36.77 Aligned_cols=282 Identities=18% Similarity=0.256 Sum_probs=151.0
Q ss_pred cChhhHHHHHHHhc-CCHHHHH-------HHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccc-----
Q 008918 29 QNVKDYEGIIEAAK-TSLKAKQ-------LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF----- 95 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-g~~k~K~-------LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~l----- 95 (549)
..+-.|..|+-+-. .+..... ...+|-.|-=+|.| +.+-..+-+.-.-.+.||.||.+-+..+
T Consensus 756 leE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylp----qi~stiL~rLnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 756 LEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLP----QICSTILWRLNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchH----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 44555777777665 3333221 12233333333333 4566677788899999999999888877
Q ss_pred -cccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc-------h----HHHHHHHHHhhhcCCCCCChHHHHHH
Q 008918 96 -CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD-------V----KASLTALFKHIGSVDEPSTDEFIREK 163 (549)
Q Consensus 96 -ck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d-------~----k~tL~~lf~qI~~~~e~~~eE~vREr 163 (549)
|-+ .+.+....=||+..|..|+|..+-.|-+|+.+++..- | -.+|+-+++ +-.|-|.|-
T Consensus 832 tc~e-e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk--------nrheKVqen 902 (1172)
T KOG0213|consen 832 TCGE-EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK--------NRHEKVQEN 902 (1172)
T ss_pred hccH-HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh--------hhHHHHHHH
Confidence 332 2457788899999999999999999999999888654 1 123344433 334667888
Q ss_pred HHHHHHhhcccchhhhcCChHHHHHHH---HHH---HHHhcccccHHHH----------HHHHHHHhhccccCCCCchhH
Q 008918 164 VLSFIRDKVFPLKAELLKPQEEMERHI---TDL---IKKSLEDVTGAEF----------RMFMDFLKSLSLFGEKAPTER 227 (549)
Q Consensus 164 ~l~Fl~~kl~~l~~e~~~~~eE~Ee~i---~~~---ikKvL~dVT~~EF----------~l~m~iL~~l~~~~t~~~~gr 227 (549)
+|.++-. +....+++... .|-.+.- +++ -+|.+.--+-.-| +.+..+|..|+. ++|
T Consensus 903 ~IdLvg~-IadrgpE~v~a-REWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkv------qeR 974 (1172)
T KOG0213|consen 903 CIDLVGT-IADRGPEYVSA-REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKV------QER 974 (1172)
T ss_pred HHHHHHH-HHhcCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchH------HHH
Confidence 8887653 33334444422 2221111 111 1223322222223 235555666655 245
Q ss_pred HHHHHHHH--HHhhhccccCCCC-----ChHHHHHH-HHHHHHhhhhhccCCChhhHHHHHHh-------hhcccCCCC-
Q 008918 228 MKELIGII--EGQADLDAQFNVS-----DADHIDRL-ISCLYMALPFFLRGASGSKFLNYLNK-------HIIPVFDKL- 291 (549)
Q Consensus 228 ~qeLv~~i--~eqa~Ld~~f~~s-----D~e~idRl-i~cl~~Alp~fs~~v~st~f~~y~~~-------~vlP~l~~l- 291 (549)
++....-+ .=-++-..+|.+. |-..=+-. -+-+-.|+.| ||+|+-+ -|+|.|++.
T Consensus 975 q~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf---------~FeyigemskdYiyav~PlleDAl 1045 (1172)
T KOG0213|consen 975 QNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSF---------MFEYIGEMSKDYIYAVTPLLEDAL 1045 (1172)
T ss_pred HhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHH---------HHHHHHHHhhhHHHHhhHHHHHhh
Confidence 33332211 1113344555532 00000000 0111223333 3333322 578888775
Q ss_pred -Ch---hh--hhhHHHHHHHhCCCCChhhh-hhhHHHHHHHh-hhcCCCCCCCCccchHHHHHH
Q 008918 292 -PE---ER--KLDLLKALAEISPYTTPQDS-RQILPSVAVLL-KYMPLRKTGGEEMNFTYVECL 347 (549)
Q Consensus 292 -~e---~~--kl~lLK~lAE~s~~~~~~da-~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcL 347 (549)
+. .+ -.++.|.+|.-++-.+-+|+ --+++.|...+ +..| -..-+..||+
T Consensus 1046 mDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sP-------hviqa~~e~~ 1102 (1172)
T KOG0213|consen 1046 MDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSP-------HVIQAFDEAM 1102 (1172)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCCh-------HHHHHHHHHH
Confidence 32 24 45899999999777777774 44455554444 4433 3566666665
No 69
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=79.00 E-value=13 Score=34.58 Aligned_cols=168 Identities=21% Similarity=0.276 Sum_probs=92.7
Q ss_pred HHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChh
Q 008918 195 KKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGS 274 (549)
Q Consensus 195 kKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st 274 (549)
+..|..+|...|+.+++-+..+..-. .+. ....+++.+.+.+-... .....+-+++.-+....| +
T Consensus 5 ~~~lnklt~~n~~~~~~~l~~~~~~~--~~~-~~~~i~~~i~~~a~~~~----~~~~~~a~l~~~l~~~~~--------~ 69 (209)
T PF02854_consen 5 RGILNKLTPSNFESIIDELIKLNWSD--DPE-TLKEIVKLIFEKAVEEP----NFSPLYARLCAALNSRFP--------S 69 (209)
T ss_dssp HHHHHHCSSTTHHHHHHHHHHHHHHS--CHH-HHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHHHHCH--------H
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhc--cHH-HHHHHHHHHhhhhhcCc----hHHHHHHHHHHHHhccch--------h
Confidence 34445555555654444444333321 222 23667777777655443 223455666665555555 3
Q ss_pred hHHHHHHhhhcccCCC------C------ChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCccch
Q 008918 275 KFLNYLNKHIIPVFDK------L------PEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEEMNF 341 (549)
Q Consensus 275 ~f~~y~~~~vlP~l~~------l------~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~l~f 341 (549)
.|...+.+.+.-.|.. . ...+....++.+||+-.+ +......++..+..++ ...+... +.-+.
T Consensus 70 ~f~~~ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~-~vv~~~~i~~~l~~ll~~~~~~~~---~~~~~ 145 (209)
T PF02854_consen 70 EFRSLLLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNF-GVVSEKIIFDILRELLSDGTDECQ---PPPDE 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHTSHHCC---HHTCH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhh-ccccchhHHHHHHHHHhccccccc---CCCcH
Confidence 4444444433333332 1 113577899999999554 3333444555555555 3332111 45678
Q ss_pred HHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHH
Q 008918 342 TYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 400 (549)
Q Consensus 342 S~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~ 400 (549)
..|||++-.+...|++--.. + +-+..+++|..+++.....
T Consensus 146 ~~ie~~~~lL~~~G~~l~~~------------------~-~~~~~l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 146 ENIECLCTLLKTCGKKLENS------------------E-ESPKALDEIFERLQKYANS 185 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------------H-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcC------------------C-CchhHHHHHHHHHHHHHHh
Confidence 99999999999977664410 0 2256677887777766554
No 70
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.23 E-value=22 Score=36.64 Aligned_cols=175 Identities=17% Similarity=0.267 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHH--HHHHHHhhccccCCCCchhHHHHHH
Q 008918 155 STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFR--MFMDFLKSLSLFGEKAPTERMKELI 232 (549)
Q Consensus 155 ~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~--l~m~iL~~l~~~~t~~~~gr~qeLv 232 (549)
++|+.+|+|.+.+|..=|..++++.+. ++--+.+++-...-|.|.....-. -+-.++ .++.+. .+....++
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~--~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~----~~~~~~i~ 82 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLS--RQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFS----PESAVKIL 82 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhcc--HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCC----hhhHHHHH
Confidence 567788999999999988888888873 333455555555555554443322 222222 444442 23346666
Q ss_pred HHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhcc--CCChhhHHHHHHhhhcccCCCCChh--hhhhHHHHHHHhCC
Q 008918 233 GIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLR--GASGSKFLNYLNKHIIPVFDKLPEE--RKLDLLKALAEISP 308 (549)
Q Consensus 233 ~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~--~v~st~f~~y~~~~vlP~l~~l~e~--~kl~lLK~lAE~s~ 308 (549)
+.+....+.. .+..++.-.+=+++.++ +.-+.. ..-+..|+.-+++-+=- +.=|.. .=.++++.+...-+
T Consensus 83 ~~l~~~~~~q-~~~q~~R~~~~~ll~~l---~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 83 RSLFQNVDVQ-SLPQSTRYAVYQLLDSL---LENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHhCChh-hhhHHHHHHHHHHHHHH---HHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcc
Confidence 6666543331 12222111111111111 111111 11234565555532211 000111 12244554444322
Q ss_pred CCChhhhhhhHHHHHHHh-hhcCC---CCCCCC------ccchHHHHHHH
Q 008918 309 YTTPQDSRQILPSVAVLL-KYMPL---RKTGGE------EMNFTYVECLL 348 (549)
Q Consensus 309 ~~~~~da~~~l~~i~~~L-~ymP~---~~~~~~------~l~fS~vEcLL 348 (549)
..+..+.+|+.+ -|.|- ||.++| +|.-+.-+||-
T Consensus 157 ------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~ 200 (262)
T PF14500_consen 157 ------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS 200 (262)
T ss_pred ------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc
Confidence 366788899999 99998 554444 57777777765
No 71
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.77 E-value=51 Score=35.67 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=71.6
Q ss_pred HHHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHH-----Hhhhhcc-ccchhH
Q 008918 12 EKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVD-----AHLDLIE-EEELGV 84 (549)
Q Consensus 12 e~LY~~~~~L~~akd~~~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~-----a~lDLcE-Ded~~I 84 (549)
+.|=.+.+-+++|-|-..+.= ....+...+ +++..+.+||+.|..-++.=|..++.+|+ .++.+.. |.+..+
T Consensus 105 d~Le~lve~iDnAndl~~~gg-l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~ 183 (342)
T KOG2160|consen 105 DNLEELVEDIDNANDLISLGG-LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTV 183 (342)
T ss_pred HHHHHHHHhhhhHHhHhhccC-HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchH
Confidence 344444455555554433222 223344555 88999999999999999999999998876 3444444 777778
Q ss_pred HHHHhhhcccccccCccchhh-----HHHHHHHHHhh
Q 008918 85 RVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAA 116 (549)
Q Consensus 85 R~qAIk~Lp~lck~~~e~~~r-----iaDVL~QLLqs 116 (549)
|++|.-+|..+-+.++-=+.+ .-.+|.-+|++
T Consensus 184 r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 184 RTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS 220 (342)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc
Confidence 999999999998877643322 46677777776
No 72
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=75.86 E-value=6.3 Score=37.63 Aligned_cols=132 Identities=17% Similarity=0.246 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCC----------Cch--hHHHHHHHHHHHhhhccccCCCCChHH
Q 008918 185 EMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEK----------APT--ERMKELIGIIEGQADLDAQFNVSDADH 252 (549)
Q Consensus 185 E~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~----------~~~--gr~qeLv~~i~eqa~Ld~~f~~sD~e~ 252 (549)
+..++|=.++...+.+.|++|=..+.++++.-..|.+. +|. +++..|.+.+ ...++..+|++
T Consensus 5 ~~k~~iP~ev~~~~~~Lt~eeK~~lkev~~~~~~~~~~de~i~~LK~ksP~L~~k~~~l~~~~------k~ki~~L~pea 78 (154)
T PF05823_consen 5 EYKELIPSEVVEFYKNLTPEEKAELKEVAKNYAKFKNEDEMIAALKEKSPSLYEKAEKLRDKL------KKKIDKLSPEA 78 (154)
T ss_dssp HHHTT--HHHHHHHHH--TTTHHHHHHHHTT-------TTHHHHHHHH-HHHHHHHHHHHHHH------HHTTTT--HHH
T ss_pred HHHHhCcHHHHHHHHcCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCHHHHHHHHHHHHHH------HHHHHcCCHHH
Confidence 33444445555556666777777777777766555431 121 2222233333 34577777876
Q ss_pred HHHHHHHHHHhhhhh---ccCCC-hhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHH
Q 008918 253 IDRLISCLYMALPFF---LRGAS-GSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSV 322 (549)
Q Consensus 253 idRli~cl~~Alp~f---s~~v~-st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i 322 (549)
-.-+-..+..++-.+ +.|.. ....+..+.+.++-.+..|+++.|-+|-+.|-+++.|.+....+.++..+
T Consensus 79 k~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i~~~~~~~k~~~~~~~~ 152 (154)
T PF05823_consen 79 KAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNFPIIASFLQNDKFQALIKKL 152 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-TT-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHCccchhhhhhhhhhhccccc
Confidence 654444444444443 23333 34456777788889999999999999999999999998776666655544
No 73
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.65 E-value=60 Score=36.66 Aligned_cols=117 Identities=21% Similarity=0.153 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccc----cchhHHHHHhhhcccc----ccc---
Q 008918 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE----EELGVRVQAIRGLPLF----CKD--- 98 (549)
Q Consensus 30 ~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcED----ed~~IR~qAIk~Lp~l----ck~--- 98 (549)
..++.+.|++..+...-.-..|++.|.....+-+.-.++.++.+++||+. ..+.+|..|+-.+-.+ |..
T Consensus 393 T~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~ 472 (618)
T PF01347_consen 393 TNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDS 472 (618)
T ss_dssp SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccc
Confidence 34455555555554433344577887776665557789999999999985 3466899999888877 766
Q ss_pred -------CccchhhHHHHHHHHHh----hchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhh
Q 008918 99 -------TPEYLSKIVDILVQLLA----AEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (549)
Q Consensus 99 -------~~e~~~riaDVL~QLLq----sdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~ 149 (549)
...-+.++++.|.+.|. ..|..+..++=+||-.+=.- .++..|...|.
T Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~---~~i~~l~~~i~ 531 (618)
T PF01347_consen 473 AEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP---ESIPVLLPYIE 531 (618)
T ss_dssp --------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G---GGHHHHHTTST
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc---hhhHHHHhHhh
Confidence 33435556666666665 34557777777777655332 35555555553
No 74
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=75.60 E-value=1.6 Score=39.51 Aligned_cols=9 Identities=78% Similarity=1.457 Sum_probs=3.4
Q ss_pred cccCCCCCC
Q 008918 535 RGRGWGARG 543 (549)
Q Consensus 535 rgr~~g~rg 543 (549)
||||.|+||
T Consensus 104 ~grg~g~rg 112 (119)
T KOG3172|consen 104 RGRGRGGRG 112 (119)
T ss_pred cCCCCCCCC
Confidence 333333333
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.45 E-value=61 Score=38.41 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=25.0
Q ss_pred hhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCC
Q 008918 274 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISP 308 (549)
Q Consensus 274 t~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~ 308 (549)
.++|.---+-|+-.|++-++-.|++-|-+|=.|..
T Consensus 331 p~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 331 PKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 45555555667777888877788888888877754
No 76
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=74.78 E-value=4.8 Score=44.42 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=12.6
Q ss_pred HHHHhhhhhhccccccChhhHHHHHHHhc
Q 008918 14 LYEFGERLNEAKDKSQNVKDYEGIIEAAK 42 (549)
Q Consensus 14 LY~~~~~L~~akd~~~~~~~Y~~Il~~~k 42 (549)
+=.||.+|..+++.. |. -|...=..+.
T Consensus 21 v~qYY~~L~~~P~~l-hr-fY~~~S~ltr 47 (419)
T KOG0116|consen 21 VRQYYNVLQNSPSKL-HR-FYMDDSVLTR 47 (419)
T ss_pred HHHHHHHHhhChHHH-HH-Hhhccceeec
Confidence 335556665555532 11 4444444444
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.49 E-value=86 Score=37.49 Aligned_cols=176 Identities=18% Similarity=0.243 Sum_probs=97.3
Q ss_pred cchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchh---HHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCC
Q 008918 80 EELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI---VERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPST 156 (549)
Q Consensus 80 ed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~---~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~ 156 (549)
.||=+.++.+|=|--+-++++++=....|||+|+.---|. +=-.+.=.++.+++.++|.+.|..+=-.|...==.+.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR 325 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence 5677899999999999999999888899999999864332 3334455566788888888777766555541000012
Q ss_pred hHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHH----HHHHHHHHHhhccccCCCCchhHHHHHH
Q 008918 157 DEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGA----EFRMFMDFLKSLSLFGEKAPTERMKELI 232 (549)
Q Consensus 157 eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~----EF~l~m~iL~~l~~~~t~~~~gr~qeLv 232 (549)
|-.+|--.|+.|- .-+-.....+++|=...+ .+|+|.... -+++...++. ....+.-++||+
T Consensus 326 d~NirYvaLn~L~-------r~V~~d~~avqrHr~tIl-eCL~DpD~SIkrralELs~~lvn------~~Nv~~mv~eLl 391 (866)
T KOG1062|consen 326 DNNIRYVALNMLL-------RVVQQDPTAVQRHRSTIL-ECLKDPDVSIKRRALELSYALVN------ESNVRVMVKELL 391 (866)
T ss_pred ccceeeeehhhHH-------hhhcCCcHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHhc------cccHHHHHHHHH
Confidence 2223333333222 222222334455544332 556544332 1223333332 223445567777
Q ss_pred HHHHHh------------hhccccCCCCChHHHHHHHHHHHHhhhhhcc
Q 008918 233 GIIEGQ------------ADLDAQFNVSDADHIDRLISCLYMALPFFLR 269 (549)
Q Consensus 233 ~~i~eq------------a~Ld~~f~~sD~e~idRli~cl~~Alp~fs~ 269 (549)
+++..+ +.+-..|.|+..=+||.+..-+..|=.|+..
T Consensus 392 ~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~ 440 (866)
T KOG1062|consen 392 EFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVND 440 (866)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccch
Confidence 666543 1233456665555666666655555555443
No 78
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=73.73 E-value=17 Score=40.01 Aligned_cols=86 Identities=22% Similarity=0.196 Sum_probs=63.7
Q ss_pred HHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008918 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (549)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI 148 (549)
+++++++..+|.++.||..+++.|-.+-. +...+.|..+|.++++..+-++=.++. ....||-..|..+++
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L~~~~p~vR~aal~al~-~r~~~~~~~L~~~L~-- 157 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG------RQAEPWLEPLLAASEPPGRAIGLAALG-AHRHDPGPALEAALT-- 157 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------hHHHHHHHHHhcCCChHHHHHHHHHHH-hhccChHHHHHHHhc--
Confidence 58999999999999999999999976543 468899999999999987766654443 344566555555443
Q ss_pred hcCCCCCChHHHHHHHHHHHH
Q 008918 149 GSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 149 ~~~~e~~~eE~vREr~l~Fl~ 169 (549)
.++-.||...+.-|.
T Consensus 158 ------d~d~~Vra~A~raLG 172 (410)
T TIGR02270 158 ------HEDALVRAAALRALG 172 (410)
T ss_pred ------CCCHHHHHHHHHHHH
Confidence 445678887766553
No 79
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=73.48 E-value=29 Score=42.38 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=52.0
Q ss_pred hhhhHHhhccCccchHHHHHHhhhh-ccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchh
Q 008918 52 AQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (549)
Q Consensus 52 aQfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (549)
---|++++++||.+.+..||-++-= .--=|+.||-+|=..|-.|+.-.|+|++ .++|+++|-+=+.
T Consensus 527 y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a--~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 527 YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA--DYVLPPLLDSTLS 593 (1133)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc--ccchhhhhhhhcC
Confidence 3568899999999999999988754 3345678999999999999988777654 3688888876433
No 80
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=73.26 E-value=40 Score=36.58 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=31.8
Q ss_pred hHHHHHHhhhcccCC-CCCh--hhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh
Q 008918 275 KFLNYLNKHIIPVFD-KLPE--ERKLDLLKALAEISPYTTPQDSRQILPSVAVLL 326 (549)
Q Consensus 275 ~f~~y~~~~vlP~l~-~l~e--~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L 326 (549)
.+..|+.++|+|-|. +... =.|.+-+|.++.....-+.+...+++|.+...|
T Consensus 301 ~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L 355 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHL 355 (370)
T ss_dssp -HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Confidence 789999999999777 2211 256677777777766544444444555554444
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=73.07 E-value=4.4 Score=44.71 Aligned_cols=10 Identities=70% Similarity=1.219 Sum_probs=4.5
Q ss_pred CCCCCCcccC
Q 008918 529 RGGIRGRGRG 538 (549)
Q Consensus 529 ~~g~rgrgr~ 538 (549)
++|+||.|||
T Consensus 396 ~gg~~~~g~~ 405 (419)
T KOG0116|consen 396 RGGGRGDGGG 405 (419)
T ss_pred CCCCcCCCCC
Confidence 4444444443
No 82
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=71.12 E-value=97 Score=32.07 Aligned_cols=166 Identities=20% Similarity=0.319 Sum_probs=85.2
Q ss_pred cChhhHHHHHHHhc-------CCHHHHHHHhhhhHHhhcc--CccchHHHHHHhhhhcc----ccchhHHHHHhhhcccc
Q 008918 29 QNVKDYEGIIEAAK-------TSLKAKQLAAQLIPRFFKF--FPDLSSRAVDAHLDLIE----EEELGVRVQAIRGLPLF 95 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-------g~~k~K~LaaQfI~kffk~--FP~L~e~Ai~a~lDLcE----Ded~~IR~qAIk~Lp~l 95 (549)
.+..-+..|++... .....+++...++.+|.+. ...+++...+.+.++.+ |.+..+|...-+.+..+
T Consensus 139 ~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~ 218 (367)
T PF04286_consen 139 QHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLREL 218 (367)
T ss_pred chHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHH
Confidence 34445555554332 2233566677777777555 34455555555333333 77777887766665444
Q ss_pred c---ccCccchhhHHHHHHHHHhhchhHHH-HHHHHHHHHHHhhch------HHHHHH----HHHhhhcCCCCCChHHHH
Q 008918 96 C---KDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDV------KASLTA----LFKHIGSVDEPSTDEFIR 161 (549)
Q Consensus 96 c---k~~~e~~~riaDVL~QLLqsdd~~E~-~~v~~aL~sllk~d~------k~tL~~----lf~qI~~~~e~~~eE~vR 161 (549)
- ..++++..++.....++|......+. ..+-..+...+..+. +..+.. +.+.+. +++.++
T Consensus 219 i~~L~~d~~~~~~i~~~~~~~l~~~~~~~~~~~l~~~l~~~i~~~l~~~~~i~~~i~~~l~~~~~~l~------~~~~l~ 292 (367)
T PF04286_consen 219 IERLLTDPELREKIEELKDKLLSELILEEFLEELWDSLREWIKEDLSREEFIEQIISELLEELIDKLK------EDPELR 292 (367)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh------cCHHHH
Confidence 2 45567777777777777755332221 112223333332222 112222 333332 336788
Q ss_pred HHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHH
Q 008918 162 EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFR 207 (549)
Q Consensus 162 Er~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~ 207 (549)
+++..|+...+..+= +.-...|-+.|...+...+.+|+.
T Consensus 293 ~~i~~~i~~~l~~~v-------~~~~~~i~~~V~~~l~~~~~~~l~ 331 (367)
T PF04286_consen 293 EKINRFIENLLERIV-------ESNHIDIGEIVEEKLNSLDDEELE 331 (367)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888888877664321 011123445555555555666664
No 83
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.96 E-value=2.6e+02 Score=34.36 Aligned_cols=184 Identities=24% Similarity=0.339 Sum_probs=106.7
Q ss_pred HHHhhhhHHhh-ccCccc--hHHHHHHhhhh-ccccchhHHHHHhhhcccc---cccCccchhhHHHHHHH-HHhhchhH
Q 008918 49 QLAAQLIPRFF-KFFPDL--SSRAVDAHLDL-IEEEELGVRVQAIRGLPLF---CKDTPEYLSKIVDILVQ-LLAAEEIV 120 (549)
Q Consensus 49 ~LaaQfI~kff-k~FP~L--~e~Ai~a~lDL-cEDed~~IR~qAIk~Lp~l---ck~~~e~~~riaDVL~Q-LLqsdd~~ 120 (549)
-=|+-++.+|- =.|++- ..+|++..+.. |+|.+..||++|.=+|-.| |+..++|++-.+=.+|| ||.--.-.
T Consensus 480 arac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 33667777777 677776 66777777664 4499999999998888887 66666765553333333 33323345
Q ss_pred HHHHHHHHHHHHHhh----------chHHHHHHHHHhhhcC---CCCCChH-HH-HHHHHHHHHhhcccc--hhhhcCCh
Q 008918 121 ERDAVHKALMSLLRQ----------DVKASLTALFKHIGSV---DEPSTDE-FI-REKVLSFIRDKVFPL--KAELLKPQ 183 (549)
Q Consensus 121 E~~~v~~aL~sllk~----------d~k~tL~~lf~qI~~~---~e~~~eE-~v-REr~l~Fl~~kl~~l--~~e~~~~~ 183 (549)
|.+.+++.|-+++-. +=..+|...|.++.-. +++.+|| .+ --=+|.=|.+-|..+ -++++
T Consensus 560 End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl--- 636 (1010)
T KOG1991|consen 560 ENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVL--- 636 (1010)
T ss_pred chhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHH---
Confidence 555555555444432 1234555666666542 2222222 21 111222222222222 12333
Q ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHH
Q 008918 184 EEMERHITDLIKKSLE-DVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEG 237 (549)
Q Consensus 184 eE~Ee~i~~~ikKvL~-dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~e 237 (549)
++.|-.++..|.++|+ +++ +=++.+.+|+.++..+. +..+.-|=+|.+++.+
T Consensus 637 ~~le~~~l~vi~~iL~~~i~-dfyeE~~ei~~~~t~~~-~~Isp~mW~ll~li~e 689 (1010)
T KOG1991|consen 637 KQLEPIVLPVIGFILKNDIT-DFYEELLEIVSSLTFLS-KEISPIMWGLLELILE 689 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhhhhhhh-cccCHHHHHHHHHHHH
Confidence 5778888999999986 554 33467889999988874 2334445778888775
No 84
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=69.93 E-value=45 Score=34.52 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=50.6
Q ss_pred ccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008918 77 IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (549)
Q Consensus 77 cEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k 138 (549)
..-.|+.||..|++-|-.+|-=++++......++.+.++.++......+=+++..++-....
T Consensus 36 v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 44677899999999999999777788888999999999888777777777777777776543
No 85
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.24 E-value=33 Score=35.56 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=86.4
Q ss_pred HHHHHHhhhhhhccccccChhhHHHHHH-Hhc-CCHHHHHHHhhhhHHhhccC-ccchHHHHHHhhhhccccchhHHHHH
Q 008918 12 EKLYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFF-PDLSSRAVDAHLDLIEEEELGVRVQA 88 (549)
Q Consensus 12 e~LY~~~~~L~~akd~~~~~~~Y~~Il~-~~k-g~~k~K~LaaQfI~kffk~F-P~L~e~Ai~a~lDLcEDed~~IR~qA 88 (549)
.+..+.++.|+..-+..+. ..-..|+. -+| .-...+...+|.++-+-.+| |++.-+++.-++-+.+..-+.+|.+.
T Consensus 130 ~~~~~~A~~La~~a~~~~~-~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 130 QECIEIAEALAQVAEAQGL-PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 5667788888777654333 34555555 344 34667778888887777755 99999999999999999999999998
Q ss_pred hhhcccc---cccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHH
Q 008918 89 IRGLPLF---CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMS 131 (549)
Q Consensus 89 Ik~Lp~l---ck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~s 131 (549)
++=|-.+ +.-..-+.+.+.-+|.++||||--.|..-|=+..++
T Consensus 209 L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 8776655 222222666677778999999999887766555444
No 86
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=68.29 E-value=5.8 Score=45.74 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=32.0
Q ss_pred HHHHHhhh---hHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHH
Q 008918 47 AKQLAAQL---IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (549)
Q Consensus 47 ~K~LaaQf---I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL 110 (549)
++.||-|. +.+|++++|.+. .+.+....+...+..+++.-|.+.-.+|+ ++.|.|
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~------v~~~~gG~~~~~q~~~l~~~~~IVVgTPg---rl~d~l 140 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVN------VVALYGGQRYDVQLRALRQGPQIVVGTPG---RLLDHL 140 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCce------EEEEECCcCHHHHHHHhcCCCCEEEECHH---HHHHHH
Confidence 34455554 555656555432 22333455566677788888888888874 555544
No 87
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.42 E-value=2.5e+02 Score=33.65 Aligned_cols=132 Identities=21% Similarity=0.233 Sum_probs=80.0
Q ss_pred HhcCCHHHHHHHhhhhHHhhccCccc------hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHH
Q 008918 40 AAKTSLKAKQLAAQLIPRFFKFFPDL------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (549)
Q Consensus 40 ~~kg~~k~K~LaaQfI~kffk~FP~L------~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QL 113 (549)
.-|+.+-.-|. =.|.++||.+||++ -..-|.-++.-.|..|-.||.....=|..+..++.+-=.-++|-|--=
T Consensus 52 vkKresi~dRI-l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~ 130 (892)
T KOG2025|consen 52 VKKRESIPDRI-LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEK 130 (892)
T ss_pred eccCCCcHHHH-HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHH
Confidence 33444443333 35899999999976 445566677788999999999888888888776554333355544322
Q ss_pred H----hhchhHHHHHHHHHHHHHHh--hchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccc
Q 008918 114 L----AAEEIVERDAVHKALMSLLR--QDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (549)
Q Consensus 114 L----qsdd~~E~~~v~~aL~sllk--~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l 175 (549)
| -+-+|.++-.+=.||.-+=. .|++.-.+.+|..+.-+| ..++||.-+|..|..--.++
T Consensus 131 l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnD---pS~EVRRaaLsnI~vdnsTl 195 (892)
T KOG2025|consen 131 LLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQND---PSDEVRRAALSNISVDNSTL 195 (892)
T ss_pred HHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC---CcHHHHHHHHHhhccCcccc
Confidence 2 22455555555556555442 255666666666665322 22467777777666544444
No 88
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=67.37 E-value=89 Score=33.28 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=84.9
Q ss_pred HHHH-HHHHhhhhhhccccc-cChhhHHHHHHHhcCCHHHHHHHhhhhHH-hhccCccchHHHHHHhhhhccccchhHHH
Q 008918 10 QIEK-LYEFGERLNEAKDKS-QNVKDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLSSRAVDAHLDLIEEEELGVRV 86 (549)
Q Consensus 10 ~ie~-LY~~~~~L~~akd~~-~~~~~Y~~Il~~~kg~~k~K~LaaQfI~k-ffk~FP~L~e~Ai~a~lDLcEDed~~IR~ 86 (549)
.++. |.++++.+.....-. ...+.-..||..+-|..+++.+-..+-+. --.-|.+|..---..+..+..++++++-.
T Consensus 59 ~~~~vL~ef~~~~~~~~~~~~gg~~~~~~iL~~~l~~~~a~~il~~i~~~~~~~~fe~L~~ld~~~l~~lL~~EhpqtiA 138 (339)
T PRK05686 59 QVEAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGTSGFDFLRKMDPQQLANFIRNEHPQTIA 138 (339)
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHcCHHHHHHHHHHHhccccCchHHHHhcCCHHHHHHHHHhcCHHHHH
Confidence 3444 356666665433222 45555677888877877777665544321 01245555554555566677888888655
Q ss_pred HHhhhccc------------------------ccccCccchhhHHHHHHHHHhh---chhHHHHHHHHHHHHHHhhchHH
Q 008918 87 QAIRGLPL------------------------FCKDTPEYLSKIVDILVQLLAA---EEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 87 qAIk~Lp~------------------------lck~~~e~~~riaDVL~QLLqs---dd~~E~~~v~~aL~sllk~d~k~ 139 (549)
=+++.+|. +-.=+|+.+..|.++|-+.+.. .......-+ +.+..+|..=++.
T Consensus 139 ~iLs~l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~~~~~~~~g~-~~~a~Iln~~~~~ 217 (339)
T PRK05686 139 LILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMANADRTKMGGV-KTVAEILNNLDRQ 217 (339)
T ss_pred HHHhCCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhcccccccccCcH-HHHHHHHhcCCch
Confidence 55544442 2233445555566666555543 122222222 2345666666666
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 008918 140 SLTALFKHIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 140 tL~~lf~qI~~~~e~~~eE~vREr~l~F 167 (549)
+-..++..|.. ..|.--+.+|++++.|
T Consensus 218 ~~~~il~~L~~-~d~~~a~~Ir~~mF~F 244 (339)
T PRK05686 218 TEKTILESLEE-EDPELAEKIKDLMFVF 244 (339)
T ss_pred HHHHHHHHHHh-hCHHHHHHHHHHhcCH
Confidence 77777777762 2222233467777777
No 89
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.33 E-value=2.2e+02 Score=34.31 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=53.3
Q ss_pred HHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhc
Q 008918 49 QLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE 117 (549)
Q Consensus 49 ~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsd 117 (549)
-..-+||.+--..=|....+=|.+++-|.-..++.|+-.|--.|..++-+ |.-+..-|+-+.+|+..+
T Consensus 224 lViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa~~~i~l~~ke 291 (948)
T KOG1058|consen 224 LVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAASTYIDLLVKE 291 (948)
T ss_pred HHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHHHHHHHHHHhc
Confidence 34457777777777888888888888888888888888888888888753 677888888888888764
No 90
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=67.09 E-value=75 Score=31.46 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHH
Q 008918 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (549)
Q Consensus 34 Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QL 113 (549)
|..++.-...=+-+=.+|..++..|+.+.|.+ ...+..++.|++.=+|..||=..-.+.+++ + ...+-+|...+
T Consensus 85 ~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~-~-~~~l~~~~~~~ 158 (208)
T cd07064 85 LEELITTKSWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTDENFWLRRTAILHQLKYKEKT-D-TDLLFEIILAN 158 (208)
T ss_pred HHHHHcCCchHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcCCcHHHHHHHHHHHHHHHHcc-C-HHHHHHHHHHh
Confidence 44444433222444556777777777776654 567788899999999888886544444332 1 34556666677
Q ss_pred HhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHh
Q 008918 114 LAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (549)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~q 147 (549)
+.+++.=...+|-.+|.++-+.||..+..=|-.+
T Consensus 159 ~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~ 192 (208)
T cd07064 159 LGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAH 192 (208)
T ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 7888888888899999999999988766655444
No 91
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=66.92 E-value=7 Score=36.26 Aligned_cols=14 Identities=7% Similarity=0.308 Sum_probs=6.1
Q ss_pred hhcCCCCccCCCcc
Q 008918 455 LHSKTPSFIGDKSV 468 (549)
Q Consensus 455 L~~~pPsf~~~~~i 468 (549)
||..|--|+-.++|
T Consensus 53 f~r~pEcYirGttI 66 (134)
T KOG3293|consen 53 FFRMPECYIRGTTI 66 (134)
T ss_pred eeecceeEEeccee
Confidence 44444445443333
No 92
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=66.47 E-value=7.5 Score=44.82 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=16.9
Q ss_pred cHHHHhhhhhcCCCCccCCC--cccccccc
Q 008918 447 NILAMSKPLHSKTPSFIGDK--SVNLSWKE 474 (549)
Q Consensus 447 NI~~li~~L~~~pPsf~~~~--~itlSW~~ 474 (549)
||.-+|..-..-|..++|.. --++|+-.
T Consensus 503 ~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~ 532 (629)
T PRK11634 503 HIVGAIANEGDISSRYIGNIKLFASHSTIE 532 (629)
T ss_pred HHHHHHHhhcCCChhhCCcEEEeCCceEEE
Confidence 66666666666677777754 23445544
No 93
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.75 E-value=56 Score=37.70 Aligned_cols=213 Identities=18% Similarity=0.214 Sum_probs=130.8
Q ss_pred HHhhhhhhccccc--cChhhHHHHHH--HhcCCHHHHHHHhhhhHHhhc---cCccc--hHHHHHHhhhhccccchhHHH
Q 008918 16 EFGERLNEAKDKS--QNVKDYEGIIE--AAKTSLKAKQLAAQLIPRFFK---FFPDL--SSRAVDAHLDLIEEEELGVRV 86 (549)
Q Consensus 16 ~~~~~L~~akd~~--~~~~~Y~~Il~--~~kg~~k~K~LaaQfI~kffk---~FP~L--~e~Ai~a~lDLcEDed~~IR~ 86 (549)
+.-..|+..+|-. -+-.++..+|= .+-.++.+.+++.-.+..|-+ +=|+. -++-++-+++=.-..++-|+.
T Consensus 189 ~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~ 268 (675)
T KOG0212|consen 189 SWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQL 268 (675)
T ss_pred HHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHH
Confidence 3444565555543 34444333332 333566666677766666644 23333 345667777777778888988
Q ss_pred HHhhhccccccc-CccchhhHHHHHHHHHhh---chh---HHHHHH-HHHHHHHHhh-------chHHHHHHHHHhhhcC
Q 008918 87 QAIRGLPLFCKD-TPEYLSKIVDILVQLLAA---EEI---VERDAV-HKALMSLLRQ-------DVKASLTALFKHIGSV 151 (549)
Q Consensus 87 qAIk~Lp~lck~-~~e~~~riaDVL~QLLqs---dd~---~E~~~v-~~aL~sllk~-------d~k~tL~~lf~qI~~~ 151 (549)
-|+.=|-.|.+- .++.+.-.++||+-+|-. .+. .|..+. +..|+.++.. |....+.++-.++.
T Consensus 269 ~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~-- 346 (675)
T KOG0212|consen 269 KALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS-- 346 (675)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh--
Confidence 888888887633 335577788888887754 221 344444 4477777764 44467888888887
Q ss_pred CCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhH--HH
Q 008918 152 DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTER--MK 229 (549)
Q Consensus 152 ~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr--~q 229 (549)
.+-+..|-.++++|..=....|.+++. .-.-|..-+-|.|.|-+.+=..+-.+++.++-.-+ .+|-.| .+
T Consensus 347 ---~~~~~tri~~L~Wi~~l~~~~p~ql~~----h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~-~~~~~~~fl~ 418 (675)
T KOG0212|consen 347 ---DDREETRIAVLNWIILLYHKAPGQLLV----HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS-NSPNLRKFLL 418 (675)
T ss_pred ---cchHHHHHHHHHHHHHHHhhCcchhhh----hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc-ccccHHHHHH
Confidence 677789999999999877677777773 23445566667888876544434455565544432 122222 34
Q ss_pred HHHHHHHHh
Q 008918 230 ELIGIIEGQ 238 (549)
Q Consensus 230 eLv~~i~eq 238 (549)
-|++++.++
T Consensus 419 sLL~~f~e~ 427 (675)
T KOG0212|consen 419 SLLEMFKED 427 (675)
T ss_pred HHHHHHhhh
Confidence 577777765
No 94
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.59 E-value=77 Score=38.25 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=68.9
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhc-cCc---cchHHHHHHhhhhccccchhHHHHHhhhcccccccC----
Q 008918 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFK-FFP---DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT---- 99 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk-~FP---~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~---- 99 (549)
.+.+-|.+-|...+ .-...|--|=+.+.+.|+ +.+ ...++.+...+|..+|+|+=|=-.||+++..||.-.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 56667999998888 558888888888888887 222 238899999999999999999999999999988322
Q ss_pred ----------------ccchhhHHHHHHHHHhh
Q 008918 100 ----------------PEYLSKIVDILVQLLAA 116 (549)
Q Consensus 100 ----------------~e~~~riaDVL~QLLqs 116 (549)
++++=||.-+++++++.
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa 836 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA 836 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHH
Confidence 35556666677776665
No 95
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=64.94 E-value=18 Score=36.03 Aligned_cols=6 Identities=100% Similarity=1.880 Sum_probs=3.1
Q ss_pred CCCCCC
Q 008918 542 RGRGRG 547 (549)
Q Consensus 542 rgr~~~ 547 (549)
|||+|+
T Consensus 208 rgrgR~ 213 (215)
T KOG3262|consen 208 RGRGRG 213 (215)
T ss_pred CCCCCC
Confidence 555554
No 96
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.63 E-value=24 Score=30.85 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=54.8
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCc---cchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHH
Q 008918 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP---DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (549)
Q Consensus 32 ~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP---~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ria 107 (549)
+.|+.++.-.. +-+.++--+=..+.+-++.=- ...+..++-++...+|+|+=|=-.|||+|..+|.-.|+ ++.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---EVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---HHH
Confidence 44555555444 444444444444444443322 33667788888999999999999999999999976653 577
Q ss_pred HHHHHHHhh
Q 008918 108 DILVQLLAA 116 (549)
Q Consensus 108 DVL~QLLqs 116 (549)
+.|++-...
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 777765544
No 97
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=64.37 E-value=19 Score=31.87 Aligned_cols=82 Identities=7% Similarity=0.169 Sum_probs=54.6
Q ss_pred HHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHH--------HHHHHHHHHH---HHhhchHHHHHHHHHhhhcCC
Q 008918 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE--------RDAVHKALMS---LLRQDVKASLTALFKHIGSVD 152 (549)
Q Consensus 84 IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E--------~~~v~~aL~s---llk~d~k~tL~~lf~qI~~~~ 152 (549)
.-...|+.+..+|-++.++-+.|++++.+-+....+.. =++++|+... .+.......+...|.++..
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~-- 88 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLG-- 88 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH--
Confidence 45678999999999999999999999999988866631 2455555443 4444445555556666652
Q ss_pred CCCChHHHHHHHHHHHH
Q 008918 153 EPSTDEFIREKVLSFIR 169 (549)
Q Consensus 153 e~~~eE~vREr~l~Fl~ 169 (549)
...+.+|.++.+.+.
T Consensus 89 --~~~~~~~~ki~kll~ 103 (121)
T smart00582 89 --AANDETKKKIRRLLN 103 (121)
T ss_pred --hCCHHHHHHHHHHHH
Confidence 222556766666544
No 98
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=63.95 E-value=80 Score=38.58 Aligned_cols=121 Identities=21% Similarity=0.361 Sum_probs=73.0
Q ss_pred HHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHH----------------------HHHHHH
Q 008918 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE----------------------RDAVHK 127 (549)
Q Consensus 70 i~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E----------------------~~~v~~ 127 (549)
|...+.+..|+|..||..|+..|-....+.|-.+..+-+-|.++|-++-.+- +.++=.
T Consensus 1009 ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFE 1088 (1233)
T KOG1824|consen 1009 IGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFE 1088 (1233)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHH
Confidence 3344557899999999999999999999988666555555666666654422 233334
Q ss_pred HHHHHHhh-chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh-hcccc-hhhhcCChHHHHHHHHHHHHHhc
Q 008918 128 ALMSLLRQ-DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD-KVFPL-KAELLKPQEEMERHITDLIKKSL 198 (549)
Q Consensus 128 aL~sllk~-d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~-kl~~l-~~e~~~~~eE~Ee~i~~~ikKvL 198 (549)
++-+|+.+ --+.-++.+++++.. .=+|.---|++.|+-. +|..+ |+.++ +--..+++-+++..
T Consensus 1089 cmytLLdscld~~dit~Fl~~~~~----GL~DhydiKmlt~l~l~rLa~lcPs~Vl----qrlD~l~EpLr~t~ 1154 (1233)
T KOG1824|consen 1089 CMYTLLDSCLDRLDITEFLNHVED----GLEDHYDIKMLTFLMLARLADLCPSAVL----QRLDRLVEPLRKTC 1154 (1233)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHh----hcchhhHHHHHHHHHHHHHHhhCcHHHH----HHHHHHHHHHHHHh
Confidence 44455444 223344444444431 1122234577777766 77776 66666 44455555555544
No 99
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.50 E-value=4.9 Score=39.12 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=13.6
Q ss_pred HhhhhhcCCCCccCCCcccccccccC
Q 008918 451 MSKPLHSKTPSFIGDKSVNLSWKEAT 476 (549)
Q Consensus 451 li~~L~~~pPsf~~~~~itlSW~~~~ 476 (549)
=|-.|+... =++-+.|+.+|+...
T Consensus 70 RipgLhQ~t--~l~~~sv~d~W~p~~ 93 (179)
T KOG2567|consen 70 RIPGLHQVT--RLRYTSVEDVWEPTE 93 (179)
T ss_pred hCcchhhhc--eeeeeehhhcccccc
Confidence 344555542 222248999998854
No 100
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=62.79 E-value=18 Score=31.87 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=44.2
Q ss_pred HHHHHhhhccccc----ccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 84 VRVQAIRGLPLFC----KDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 84 IR~qAIk~Lp~lc----k~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
-|+.|+-+|..+| ++-.+|++.|...+...+.+.|+..+-.+=.||-.+.+.-...
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~ 61 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE 61 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777775 4455778888888889999999999999999999998874433
No 101
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=62.62 E-value=42 Score=31.80 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=47.0
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhccccc
Q 008918 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (549)
Q Consensus 30 ~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lc 96 (549)
-.--|..+|..-..|.+-=+=||+|.=|| .++.++-++++++-||+++...|+.=.-=|-.||
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~----~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~ 68 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN----RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLC 68 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc----cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 34456777776665555555688888887 8999999999999999999988976555444444
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=61.22 E-value=25 Score=36.35 Aligned_cols=77 Identities=26% Similarity=0.367 Sum_probs=57.4
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf 145 (549)
-..++..+..+++|.+..||..|+.+|..++..+ .-+++.|.+.++.++...+..+ +..+-.++.......+.
T Consensus 178 ~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~---~~~l~~~~~~~~~~~l~ 250 (335)
T COG1413 178 DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAA---LLALGEIGDEEAVDALA 250 (335)
T ss_pred ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHH---HHHhcccCcchhHHHHH
Confidence 3567788888899999999999999999998765 3577888988888887776655 44445555555666666
Q ss_pred Hhhh
Q 008918 146 KHIG 149 (549)
Q Consensus 146 ~qI~ 149 (549)
..+.
T Consensus 251 ~~l~ 254 (335)
T COG1413 251 KALE 254 (335)
T ss_pred HHHh
Confidence 6665
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=60.70 E-value=6.5 Score=28.51 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=26.4
Q ss_pred HHHHHHhhhhccccchhHHHHHhhhcccccc
Q 008918 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (549)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck 97 (549)
.-+|..+++|+.+.|+.||.+|.-.|-.||+
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3478889999999999999999998887763
No 104
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=60.59 E-value=81 Score=36.73 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=77.5
Q ss_pred HHhhhhHHhhccC--ccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHH
Q 008918 50 LAAQLIPRFFKFF--PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHK 127 (549)
Q Consensus 50 LaaQfI~kffk~F--P~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~ 127 (549)
=+|..+-+|--.. |++-..++.++--+...--+..|-.|+|-|-+|+...|+-+.- +.-=+.=|.+|+. ++...=
T Consensus 283 E~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v-cN~evEsLIsd~N--r~Isty 359 (898)
T COG5240 283 EAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV-CNKEVESLISDEN--RTISTY 359 (898)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-cChhHHHHhhccc--ccchHH
Confidence 3455555544433 7778888888888888888889999999999987666554321 1111222334433 455667
Q ss_pred HHHHHHhhchHHHHHHHHHhhhcCCCCCCh-------HHHHHHHHHHHH
Q 008918 128 ALMSLLRQDVKASLTALFKHIGSVDEPSTD-------EFIREKVLSFIR 169 (549)
Q Consensus 128 aL~sllk~d~k~tL~~lf~qI~~~~e~~~e-------E~vREr~l~Fl~ 169 (549)
|+-+|||.....++..|.++|.+.-....| |.+|..++.|=+
T Consensus 360 AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 360 AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 888999999888998888888654322333 346777777633
No 105
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=58.70 E-value=63 Score=37.99 Aligned_cols=128 Identities=20% Similarity=0.335 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHH-HHHHHHHhhhccccCCCCChHHHHHHHHHH
Q 008918 182 PQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-LIGIIEGQADLDAQFNVSDADHIDRLISCL 260 (549)
Q Consensus 182 ~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qe-Lv~~i~eqa~Ld~~f~~sD~e~idRli~cl 260 (549)
+..|-+..++-.|+.++...-..+.-+| |+..+.+..++++++++.+ .+.++-. -|+.+|.-+=++.++
T Consensus 342 s~~~~~~~~~p~l~pi~~~~~~~~~~l~--i~e~mdlL~~Kt~~e~~~~~IlplL~~------S~~~~~~~iQ~~~L~-- 411 (700)
T KOG2137|consen 342 SQNEFGPKMLPALKPIYSASDPKQALLF--ILENMDLLKEKTPPEEVKEKILPLLYR------SLEDSDVQIQELALQ-- 411 (700)
T ss_pred chhhhhhhhhHHHHHHhccCCcccchhh--HHhhHHHHHhhCChHHHHHHHHHHHHH------HhcCcchhhHHHHHH--
Confidence 4566778888888888775433333322 2233333335666666444 4444432 233343333333333
Q ss_pred HHhhhhhccCCChhhHHHHHHhhhcccCCCC-----ChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hh
Q 008918 261 YMALPFFLRGASGSKFLNYLNKHIIPVFDKL-----PEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KY 328 (549)
Q Consensus 261 ~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l-----~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~y 328 (549)
.+|-+..... +.++-+.|+|.+..+ ....|.++|-.++.++ ...|.-++++.+...+ .+
T Consensus 412 --~lptv~e~iD----~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 412 --ILPTVAESID----VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKAAVLDELLPILKCI 476 (700)
T ss_pred --hhhHHHHhcc----HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHh
Confidence 3444444333 677888999988887 2368999999999998 4456666777777777 44
No 106
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.45 E-value=7.3 Score=42.62 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=6.6
Q ss_pred hccCccchHHHHHHhh
Q 008918 59 FKFFPDLSSRAVDAHL 74 (549)
Q Consensus 59 fk~FP~L~e~Ai~a~l 74 (549)
|+.+...|.+||.+++
T Consensus 21 ~~~pt~iQ~~ai~~il 36 (456)
T PRK10590 21 YREPTPIQQQAIPAVL 36 (456)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3333344444444433
No 107
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.38 E-value=4e+02 Score=32.09 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred hhhhHHhhccCccchH---HHHHHhhhhcc----ccchhHHHHHhhhcccccccCccchhh---HHHHHHHHHhhchhHH
Q 008918 52 AQLIPRFFKFFPDLSS---RAVDAHLDLIE----EEELGVRVQAIRGLPLFCKDTPEYLSK---IVDILVQLLAAEEIVE 121 (549)
Q Consensus 52 aQfI~kffk~FP~L~e---~Ai~a~lDLcE----Ded~~IR~qAIk~Lp~lck~~~e~~~r---iaDVL~QLLqsdd~~E 121 (549)
..+|.-.|++-|.+.+ +-++.+++|.+ |-.|-+|..|++.+..+|.-+-.|..| ++-..+--||+....+
T Consensus 323 caN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~V 402 (1128)
T COG5098 323 CANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVV 402 (1128)
T ss_pred HHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHH
Confidence 4456667777886654 67889999887 778889999999999999888777666 6666778888887766
Q ss_pred HHHHHHHHHHHHhhchHHH
Q 008918 122 RDAVHKALMSLLRQDVKAS 140 (549)
Q Consensus 122 ~~~v~~aL~sllk~d~k~t 140 (549)
+--+-+-+.-|+-.+|=++
T Consensus 403 Rrnaikl~SkLL~~HPF~~ 421 (1128)
T COG5098 403 RRNAIKLCSKLLMRHPFAS 421 (1128)
T ss_pred HHHHHHHHHHHHhcCChhh
Confidence 6555555566666666443
No 108
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=57.34 E-value=38 Score=38.11 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=30.9
Q ss_pred hhHHHHHhhhcccccccCccchhhHHHHHHHHHhh-chhHHHHHHHHHHHHHHhhchHH
Q 008918 82 LGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 82 ~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~d~k~ 139 (549)
..||++||.+|..+.+..| .++-++|.+++.. .++.|+-++ |+..|++.+|-.
T Consensus 494 ~~iR~~Av~Alr~~a~~~p---~~v~~~l~~i~~n~~e~~EvRia--A~~~lm~t~P~~ 547 (574)
T smart00638 494 TFIRLAAILALRNLAKRDP---RKVQEVLLPIYLNRAEPPEVRMA--AVLVLMETKPSV 547 (574)
T ss_pred HHHHHHHHHHHHHHHHhCc---hHHHHHHHHHHcCCCCChHHHHH--HHHHHHhcCCCH
Confidence 3467777777776654333 3566666666554 555554444 566666665543
No 109
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.03 E-value=9.6 Score=44.66 Aligned_cols=90 Identities=27% Similarity=0.344 Sum_probs=60.1
Q ss_pred CCHHHHHHHhhhhHHhhccC----ccchHHHHH--------HhhhhccccchhHHHHHhhhcccccccCccchhh--HHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFF----PDLSSRAVD--------AHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--IVD 108 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~F----P~L~e~Ai~--------a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r--iaD 108 (549)
....+.-=||.. ||..| ||+-.+++| -++||.+|+-|.||--||+++-.+--.-|+.+|+ +.|
T Consensus 186 ~Ns~VrsnAa~l---f~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ 262 (1005)
T KOG1949|consen 186 RNSEVRSNAALL---FVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILID 262 (1005)
T ss_pred CchhhhhhHHHH---HHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 334444445554 45555 466444444 4578999999999999999998888888999988 778
Q ss_pred HHHHHHhh---chh-HHHHHHHHHHHHHHhh
Q 008918 109 ILVQLLAA---EEI-VERDAVHKALMSLLRQ 135 (549)
Q Consensus 109 VL~QLLqs---dd~-~E~~~v~~aL~sllk~ 135 (549)
+|..+.-+ |-. .++-.|=+.|..++..
T Consensus 263 ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n 293 (1005)
T KOG1949|consen 263 LLKKITDELAFDTSSDVRCSVFKGLPMILDN 293 (1005)
T ss_pred HHHHHHHHhhhccchheehhHhcCcHHHHcC
Confidence 88766544 222 4445555666555543
No 110
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=56.45 E-value=59 Score=34.62 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=9.4
Q ss_pred HHHHHHHH--HHHHHHHHhh
Q 008918 396 TVEDLTRA--TMKKLTQGLA 413 (549)
Q Consensus 396 yla~~~q~--yikkL~~~l~ 413 (549)
|||+-+.. .|.|+++-|.
T Consensus 171 YfAEMaKSD~HMqKVr~~Li 190 (328)
T KOG3080|consen 171 YFAEMAKSDEHMQKVRQRLI 190 (328)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 55555544 5555555544
No 111
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=56.06 E-value=1.8e+02 Score=28.18 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=84.4
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-HHHHH--
Q 008918 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDIL-- 110 (549)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-iaDVL-- 110 (549)
+.||+..- .+.+.-.+|-++|.--.+.==-.=.+.+-.++-|.-|.++.||..|.+-+-.++...+.++.. ..+-.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666555 667777778787776655433334678888888999999999999999999999888777554 44443
Q ss_pred ----HHHHhhchh-HH---HHHHHHHHHHHHhh---chHHHHHHHHHhhhcCCCC--CChHHHHHHHHHHHHhhcccch
Q 008918 111 ----VQLLAAEEI-VE---RDAVHKALMSLLRQ---DVKASLTALFKHIGSVDEP--STDEFIREKVLSFIRDKVFPLK 176 (549)
Q Consensus 111 ----~QLLqsdd~-~E---~~~v~~aL~sllk~---d~k~tL~~lf~qI~~~~e~--~~eE~vREr~l~Fl~~kl~~l~ 176 (549)
-+-+..+.. .. ....-..|-++++. .-+.-+.+|++....+-.. .++..-.-..+.|+++-|..+|
T Consensus 91 af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 91 AFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcCC
Confidence 222222222 12 55566666666662 2233344444444321100 1112233456678887777665
No 112
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=55.97 E-value=14 Score=28.50 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=23.9
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
-|+.|.|.++++.++..+-.+|.++|+.+|..
T Consensus 10 Nvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e 41 (46)
T PF01465_consen 10 NVLLQFLESREPSEREQLLPVIATLLKFSPEE 41 (46)
T ss_dssp HHHHHHHTTSS---HHHHHHHHHHHTT--HHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHCCCHHH
Confidence 37899999999999999989999999998864
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=54.95 E-value=2e+02 Score=29.60 Aligned_cols=102 Identities=24% Similarity=0.212 Sum_probs=67.5
Q ss_pred hHHHHHHHhcC-CHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHH
Q 008918 33 DYEGIIEAAKT-SLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILV 111 (549)
Q Consensus 33 ~Y~~Il~~~kg-~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~ 111 (549)
.-..++..... +.-.+.-|+.-+.. --.++|+..+.++|.|.++.||.+|+..|-.+-. +.-++.|.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------~~a~~~li 111 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGE------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGD------PEAVPPLV 111 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhh------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------hhHHHHHH
Confidence 44455555543 45555555544211 1258999999999999999999999996655532 35788899
Q ss_pred HHHhh-chhHHHHHHHHHHHHHHhhchHHHHHHHHHhhh
Q 008918 112 QLLAA-EEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (549)
Q Consensus 112 QLLqs-dd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~ 149 (549)
.+|++ ++...+..+-.+| .+...+..+..++..+.
T Consensus 112 ~~l~~d~~~~vR~~aa~aL---~~~~~~~a~~~l~~~l~ 147 (335)
T COG1413 112 ELLENDENEGVRAAAARAL---GKLGDERALDPLLEALQ 147 (335)
T ss_pred HHHHcCCcHhHHHHHHHHH---HhcCchhhhHHHHHHhc
Confidence 99995 6666666655554 44544555777777765
No 114
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=54.38 E-value=2.4e+02 Score=28.33 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=49.1
Q ss_pred hccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 76 LcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
+-++.++.+....++.||.+|+.+...++-+..+|+.|..+....-..+...-+..+++.+++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~ 72 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH 72 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH
Confidence 7788999999999999999996654667779999988877765544455566666677777664
No 115
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.08 E-value=47 Score=37.78 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=80.1
Q ss_pred HHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHH-----HHhhhhccccch-hHHHHHhhhcccccccCc-----cchh
Q 008918 36 GIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAV-----DAHLDLIEEEEL-GVRVQAIRGLPLFCKDTP-----EYLS 104 (549)
Q Consensus 36 ~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai-----~a~lDLcEDed~-~IR~qAIk~Lp~lck~~~-----e~~~ 104 (549)
-|.-...+++.++.=|..-|.....+=|++.+-++ ..++.+....+. .+.++|.-.|..||+... +.+.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 34445668888888888888888888888876654 558888887775 678899999999997763 5688
Q ss_pred hHHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008918 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 105 riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (549)
.+-.+|..||.+.|+..+.-+-+||..|.+-
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 8999999999999999998888888777643
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=53.91 E-value=51 Score=36.33 Aligned_cols=89 Identities=15% Similarity=0.005 Sum_probs=64.3
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHH
Q 008918 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ria 107 (549)
........++.+.+ .++.+...+..-....- .++...++.+.+|+|+.||.+|++.|-.+... +.++.
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--~a~~~-- 182 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPGPALEAALTHEDALVRAAALRALGELPRR--LSEST-- 182 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--cchHH--
Confidence 44555667777777 66778877776665521 22455666667799999999999999888754 44444
Q ss_pred HHHHHHHhhchhHHHHHHHHHHH
Q 008918 108 DILVQLLAAEEIVERDAVHKALM 130 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~ 130 (549)
|..++++++++++.++-.+|.
T Consensus 183 --L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 183 --LRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred --HHHHHcCCCHHHHHHHHHHHH
Confidence 567799999999988877773
No 117
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=53.55 E-value=28 Score=44.12 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=47.9
Q ss_pred HHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchh
Q 008918 48 KQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (549)
Q Consensus 48 K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (549)
+.+-+|| ||- ++.--.++.++.++++.+=-...+....|..||.++.|.. -..+++.|.+||+.+..
T Consensus 175 ~Lil~Ql--rwL-d~i~d~~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~--h~~v~~~L~~ll~~~~~ 241 (1426)
T PF14631_consen 175 RLILNQL--RWL-DRIVDSEELTDKLFEVLSIAPVELQKEIISSLPEILDDSQ--HDEVVEELLELLQENPE 241 (1426)
T ss_dssp HHHHGGG--TT--S--SSHHHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGG--HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHh--hcc-ccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHhcCCc
Confidence 4555555 322 2334478889999999987777899999999999997742 46799999999998644
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=53.52 E-value=21 Score=41.01 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=62.9
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHh-hhhhccCCChhhHH----HHHH
Q 008918 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA-LPFFLRGASGSKFL----NYLN 281 (549)
Q Consensus 207 ~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~A-lp~fs~~v~st~f~----~y~~ 281 (549)
++|..++..+|-. +| +-|++++...+..|..|-.++-++...++.-++|. ||+.-+.+-.+.=| -|.|
T Consensus 502 eqie~fa~~~Pd~---t~----snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p~v~ 574 (700)
T KOG0953|consen 502 EQIELFAYHLPDA---TP----SNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMPRVC 574 (700)
T ss_pred HHHHHHHHhCCCc---cH----HHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCchHH
Confidence 4444455555554 44 44889988888888888888888887777777765 77764433221111 1111
Q ss_pred hhhcc---cCCCCChhhhhhHHHHHHHhCCCCChhh--hhhhHHHHHHHh-hhc
Q 008918 282 KHIIP---VFDKLPEERKLDLLKALAEISPYTTPQD--SRQILPSVAVLL-KYM 329 (549)
Q Consensus 282 ~~vlP---~l~~l~e~~kl~lLK~lAE~s~~~~~~d--a~~~l~~i~~~L-~ym 329 (549)
..++- .+++ .+...+.-|| .++.-|.|.+.. .-+.|+++|+.| .||
T Consensus 575 ~~f~kfa~~~s~-~~~l~~~~l~-~~~~~p~~~p~t~~~L~~LEs~h~il~lYm 626 (700)
T KOG0953|consen 575 SAFLKFARQYSQ-NEPLTFLWLK-FNLGWPNKIPKTIYELEDLESLHDILDLYM 626 (700)
T ss_pred HHHHHHHHHHhc-CCcccHHHHH-HhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11111 1111 0123334455 555556664433 344577777777 776
No 119
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=53.47 E-value=47 Score=29.61 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=57.8
Q ss_pred HHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhh--chhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008918 71 DAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA--EEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (549)
Q Consensus 71 ~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqs--dd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI 148 (549)
+.+.|+....+..-|++||++|-.+.+-...|++..+-=++-.||+ +.+.=...+=++...+++.=....|+.+++|+
T Consensus 18 ~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 18 DVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQI 97 (107)
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4566777788888999999999999887778877766666666766 55544445556666677664557788888877
Q ss_pred h
Q 008918 149 G 149 (549)
Q Consensus 149 ~ 149 (549)
.
T Consensus 98 ~ 98 (107)
T PF08064_consen 98 F 98 (107)
T ss_pred H
Confidence 5
No 120
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=52.90 E-value=3.6e+02 Score=29.93 Aligned_cols=191 Identities=16% Similarity=0.142 Sum_probs=95.8
Q ss_pred hHHHHHHhhhhc----------cccchhHHHHHhhhcccccccCccc---hh--hHHHHHHHHHhhc----hhHHHHHHH
Q 008918 66 SSRAVDAHLDLI----------EEEELGVRVQAIRGLPLFCKDTPEY---LS--KIVDILVQLLAAE----EIVERDAVH 126 (549)
Q Consensus 66 ~e~Ai~a~lDLc----------EDed~~IR~qAIk~Lp~lck~~~e~---~~--riaDVL~QLLqsd----d~~E~~~v~ 126 (549)
.+++|..++.+. ++.+..+++.|.|-|-.+.=.+|.- .. ..++-|+..|... .+.|....-
T Consensus 20 ~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~ 99 (446)
T PF10165_consen 20 TEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLD 99 (446)
T ss_pred cHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHH
Confidence 345555555555 5778889999999998885333321 11 2556667777765 255555554
Q ss_pred HHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhc---CChHHHHHHHHHHHHHhcccc--
Q 008918 127 KALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL---KPQEEMERHITDLIKKSLEDV-- 201 (549)
Q Consensus 127 ~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~---~~~eE~Ee~i~~~ikKvL~dV-- 201 (549)
-=|.=|+.-........++.+. ..-+-++..|...+......-- .+ ..++..++.++-|+|=.|
T Consensus 100 ~RLLFLlTa~~~~~~~~L~~e~----------~~~~~l~~~L~~~l~~~~~~~~~~~~~-~~~~~~~l~EiLKllFNit~ 168 (446)
T PF10165_consen 100 SRLLFLLTALRPDDRKKLIEEH----------HGVELLTEALERHLKVKSKSSQEPTAP-SPMDEEALSEILKLLFNITL 168 (446)
T ss_pred HHHHHHHhcCChhHHHHHHHHh----------hhHHHHHHHHHHHHhcccccccccCCC-CcchHHHHHHHHHHHHHhhh
Confidence 4444455444444444444432 1223344444444433211111 11 235566666666665322
Q ss_pred -----cHHHH----HHHHHHHhhc--cccCCCCch-hHHHHHHHHHHHh-----hh-cccc-------CCCCChHHHHHH
Q 008918 202 -----TGAEF----RMFMDFLKSL--SLFGEKAPT-ERMKELIGIIEGQ-----AD-LDAQ-------FNVSDADHIDRL 256 (549)
Q Consensus 202 -----T~~EF----~l~m~iL~~l--~~~~t~~~~-gr~qeLv~~i~eq-----a~-Ld~~-------f~~sD~e~idRl 256 (549)
..++| ..++.+|..+ +.-.+ .|- .=...+|.++..- .. +... +...+...|+++
T Consensus 169 ~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~-~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~L 247 (446)
T PF10165_consen 169 HYPKSVPEEFSPSIPHLVSILRRLLPPPPSS-PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERL 247 (446)
T ss_pred ccCcccchhhhHHHHHHHHHHHHHhccCCCC-CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHH
Confidence 11233 4566666655 22211 111 0012233333321 00 0111 123466789999
Q ss_pred HHHHHHhhhhhc
Q 008918 257 ISCLYMALPFFL 268 (549)
Q Consensus 257 i~cl~~Alp~fs 268 (549)
+..+.+++..+.
T Consensus 248 l~~Ld~~l~~~~ 259 (446)
T PF10165_consen 248 LDFLDKRLDKYE 259 (446)
T ss_pred HHHHHHHHHhcC
Confidence 999999887774
No 121
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=52.84 E-value=7.3 Score=35.42 Aligned_cols=16 Identities=69% Similarity=1.120 Sum_probs=9.5
Q ss_pred CCCCCCCCcccCCCCCC
Q 008918 527 GGRGGIRGRGRGWGARG 543 (549)
Q Consensus 527 ~~~~g~rgrgr~~g~rg 543 (549)
.||+.+|||||| ++||
T Consensus 94 ~~rgrgrg~Grg-~~~g 109 (109)
T KOG3428|consen 94 VGRGRGRGRGRG-RGRG 109 (109)
T ss_pred cccccccccccC-CCCC
Confidence 455666666666 5554
No 122
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=52.21 E-value=2.7e+02 Score=30.64 Aligned_cols=239 Identities=18% Similarity=0.226 Sum_probs=138.3
Q ss_pred HHHHhhhhhhccccccChhhHHHHHH-Hhc-CCHHHHHHHhhhhHHhhccCccc--h-------HHHHHHhhhhccccch
Q 008918 14 LYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPDL--S-------SRAVDAHLDLIEEEEL 82 (549)
Q Consensus 14 LY~~~~~L~~akd~~~~~~~Y~~Il~-~~k-g~~k~K~LaaQfI~kffk~FP~L--~-------e~Ai~a~lDLcEDed~ 82 (549)
+-.+-++|=.|++..--...|.--|. |-+ .++.+|.||..-|.+...+--.- . .+-+--++|.+..+|-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 66677788888876644455655554 444 88999999999999887765422 1 1222245677778888
Q ss_pred hHHHHHhhhcccccccCccchhhHHHHHHHHHhhchh--------------HHHHHHHHHHHHHHhhchHH----HHHHH
Q 008918 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI--------------VERDAVHKALMSLLRQDVKA----SLTAL 144 (549)
Q Consensus 83 ~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~--------------~E~~~v~~aL~sllk~d~k~----tL~~l 144 (549)
.|-++||+.|..++. .-|-|.-+.-++-. ..+--|-.-++.++++-|.. +-+||
T Consensus 143 eVAkAAiesikrial--------fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 143 EVAKAAIESIKRIAL--------FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred HHHHHHHHHHHHHHh--------cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 999999999887753 22333333333211 22223334455666665543 45788
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHHHhhcccc-hhhhcCChHHHHHHHHHHHHHhcccccHHHHHHH------HHHHhhcc
Q 008918 145 FKHIGSVDEPSTDEFIREKVLSFIRDKVFPL-KAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF------MDFLKSLS 217 (549)
Q Consensus 145 f~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l-~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~------m~iL~~l~ 217 (549)
++++...-.+.+|-.||-.||.+..+-+..- .++++ .++-++++|-.+..-.+..-|..| -.+++.+.
T Consensus 215 ldlLeaElkGteDtLVianciElvteLaeteHgrefl-----aQeglIdlicnIIsGadsdPfekfralmgfgkffgkea 289 (524)
T KOG4413|consen 215 LDLLEAELKGTEDTLVIANCIELVTELAETEHGREFL-----AQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhc-----chhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchH
Confidence 8888743333334457999998766433221 22333 256678888887765555555433 34455555
Q ss_pred ccCCCCchhHHHHHHHHHHHhhhccccCC---CCChHHHHHHHHHHHHhhhhhccCCChhhH
Q 008918 218 LFGEKAPTERMKELIGIIEGQADLDAQFN---VSDADHIDRLISCLYMALPFFLRGASGSKF 276 (549)
Q Consensus 218 ~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~---~sD~e~idRli~cl~~Alp~fs~~v~st~f 276 (549)
+|. +++..-...++-.| |..|. ..|++.+.-.|. |+-...+++.+...
T Consensus 290 imd-vseeaicealiiai------dgsfEmiEmnDpdaieaAiD----alGilGSnteGadl 340 (524)
T KOG4413|consen 290 IMD-VSEEAICEALIIAI------DGSFEMIEMNDPDAIEAAID----ALGILGSNTEGADL 340 (524)
T ss_pred Hhh-cCHHHHHHHHHHHH------HhhHHhhhcCCchHHHHHHH----HHHhccCCcchhHH
Confidence 553 23321111222222 23333 457777776666 66667666666554
No 123
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=52.20 E-value=6.7e+02 Score=33.01 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=95.8
Q ss_pred cccHHHHH-HHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHH
Q 008918 200 DVTGAEFR-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN 278 (549)
Q Consensus 200 dVT~~EF~-l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~ 278 (549)
|+|..... .|.+++.++|.|.|+.+. ......|..+|+..+.-.+...| ......+.
T Consensus 1205 D~t~~~lr~al~e~la~fPVYRtY~~~-----------------~~~~~~d~~~i~~a~~~Ar~~~~-----~~~~~~~~ 1262 (1693)
T PRK14507 1205 DFTRNALRRALAEIVARFPVYRTYLPP-----------------TEVSAEDVRYIEGAVRKAKRRSR-----LPDRSVHD 1262 (1693)
T ss_pred cCCHHHHHHHHHHHHHcCCccccCCCC-----------------CCCCHHHHHHHHHHHHHHHhhCC-----ccchHHHH
Confidence 66766653 689999999999987743 12233445556655544333221 11235666
Q ss_pred HHHhhhcccCC--CCChhhhhhHHHHHHHhCCCCChhhhh---hhHHHHHHHh---hhcCCCCCCCCccchHHHHHHHHH
Q 008918 279 YLNKHIIPVFD--KLPEERKLDLLKALAEISPYTTPQDSR---QILPSVAVLL---KYMPLRKTGGEEMNFTYVECLLYT 350 (549)
Q Consensus 279 y~~~~vlP~l~--~l~e~~kl~lLK~lAE~s~~~~~~da~---~~l~~i~~~L---~ymP~~~~~~~~l~fS~vEcLLya 350 (549)
|+-.-++.... .++++.+-..+....-+-+||++..|+ ...=..|.-| +.+...|. .+-.| .=+
T Consensus 1263 ~i~~~L~~~~~~~~~~~~~~~~~~~f~~rfQQ~tgpvmAKgvEDTaFYry~rL~slNEVGg~P~---~fg~~-----~~~ 1334 (1693)
T PRK14507 1263 FVRDVLLGRIDLGGAGHPLRQLVLRFRRRFQQFTAPVMAKSLEDTLFYRYVRLVSLNEVGGDPG---EFGLD-----AEH 1334 (1693)
T ss_pred HHHHHHcCCcccccccchhhHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhhhccCCCCcc---ccCCC-----HHH
Confidence 66655553332 233433333344444455567777753 3344455554 56655442 11111 235
Q ss_pred HHHhhh----cCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008918 351 FHHLAH----KAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQ 410 (549)
Q Consensus 351 fh~L~~----K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikkL~~ 410 (549)
||+... ..|..|+.. =| -| .+|-+|-|+||..|++.-......|++
T Consensus 1335 FH~~~~~R~~~~P~~m~at-----sT--------HD-tKRgEDvRARl~vLSE~p~eW~~~v~~ 1384 (1693)
T PRK14507 1335 FHALNAARARDWPHAMLAT-----ST--------HD-TKRSEDVRARILVLSEMPEEWRLALDR 1384 (1693)
T ss_pred HHHHHHHHHHhCCccccch-----hh--------cc-ccccHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777654 457766542 13 25 689999999999999998887766653
No 124
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=52.05 E-value=20 Score=39.22 Aligned_cols=17 Identities=6% Similarity=0.091 Sum_probs=9.1
Q ss_pred CCCChhhhhhHHHHHHH
Q 008918 289 DKLPEERKLDLLKALAE 305 (549)
Q Consensus 289 ~~l~e~~kl~lLK~lAE 305 (549)
..++...+..++..|..
T Consensus 277 g~~~~~~R~~~l~~F~~ 293 (456)
T PRK10590 277 GNKSQGARTRALADFKS 293 (456)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34444556666665543
No 125
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=51.15 E-value=2.3e+02 Score=32.47 Aligned_cols=191 Identities=14% Similarity=0.172 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHH--HHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHH
Q 008918 119 IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEF--IREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (549)
Q Consensus 119 ~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~--vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikK 196 (549)
......|++||.++.+-|+. ....|..++..+.+..+... --...|+=|..-+-.|.. ..+..|-..++-
T Consensus 10 ~~~~~~V~~AL~~~~~Gd~~-~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~-------~~~~LV~ail~~ 81 (563)
T PF05327_consen 10 EMYKSFVRSALESHEKGDSS-QYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDS-------SCKQLVEAILSL 81 (563)
T ss_dssp HHHHHHHHHHHHHHHTT--H-HHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-S-------CCHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHcC
Confidence 45567899999999876553 56666777732222222211 123333333333433322 233333333322
Q ss_pred hcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHh----hhccccC----CCCChHHHHHHHHHHHHhhhhhc
Q 008918 197 SLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ----ADLDAQF----NVSDADHIDRLISCLYMALPFFL 268 (549)
Q Consensus 197 vL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eq----a~Ld~~f----~~sD~e~idRli~cl~~Alp~fs 268 (549)
.--..+..-...++++|..|=+.++ ..+...+.++.+. -...... .....+..+|+...++..+-++.
T Consensus 82 ~W~~~~~~~v~~y~~Fl~~Lvsa~~----~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP 157 (563)
T PF05327_consen 82 NWLGRDEDFVEAYIQFLINLVSAQP----KYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVP 157 (563)
T ss_dssp TGGGS-HHHHHHHHHHHHHHHHH-G----GGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-G
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcC
Confidence 2224443333456666666655542 2234555555543 1111111 11222344556654444444333
Q ss_pred cCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh
Q 008918 269 RGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL 326 (549)
Q Consensus 269 ~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L 326 (549)
. +..++.=+..+-+|+..+ +......-++.+-.++.|| +.-...++..|++.|
T Consensus 158 ~---s~~~L~~~l~~~FP~~~~-~~~~~~~Yv~NlL~l~~Y~-P~L~~~Il~lIi~rL 210 (563)
T PF05327_consen 158 T---SPSFLIPILVQNFPHKRK-SKDEHVNYVRNLLRLTEYC-PELRSDILSLIIERL 210 (563)
T ss_dssp G---GHHHHHHHHHHTS--TTS--HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHcCcCCCC-ChHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHH
Confidence 2 355666666688898743 5567788899999999999 444556777776665
No 126
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=50.23 E-value=3.9e+02 Score=29.46 Aligned_cols=188 Identities=16% Similarity=0.188 Sum_probs=102.6
Q ss_pred cCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhcc----ccchhHHHHHhhhcccc---ccc--CccchhhHHHHHHH
Q 008918 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE----EEELGVRVQAIRGLPLF---CKD--TPEYLSKIVDILVQ 112 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcE----Ded~~IR~qAIk~Lp~l---ck~--~~e~~~riaDVL~Q 112 (549)
+.++=.+++.-+.|.+|+-+|=--...+..+-+..|. ..+...|+-++.-|-.- ++. -|-++..+-=.|-|
T Consensus 158 ~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~ 237 (373)
T PF14911_consen 158 RQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQ 237 (373)
T ss_pred ccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Confidence 4788899999999999998885444444433333454 23455677666655443 233 33445555556667
Q ss_pred HHhh----chhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHH
Q 008918 113 LLAA----EEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMER 188 (549)
Q Consensus 113 LLqs----dd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee 188 (549)
|+.. +.......+ +.++.++|.++.-. +|++.+|--++.+|+.=+.... ..++.+..+
T Consensus 238 Ll~~~~~~~~~~~~~~~------------~~~lp~lL~c~~~v---~e~~~~k~~a~e~l~~mv~~~~---~~~~~~~~~ 299 (373)
T PF14911_consen 238 LLKRLQRQNENQILTLL------------RLVLPSLLECLMLV---NEEPQVKKLATELLQYMVESCQ---VGSSGEPRE 299 (373)
T ss_pred HHHhcCcccchhHHHHH------------HHhhHHHHHHHhhc---CCCcchhHHHHHHHHHHHHccc---ccCcchHHH
Confidence 7766 333333322 44566777777643 2345688888888776554432 222334433
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhh-
Q 008918 189 HITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFF- 267 (549)
Q Consensus 189 ~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~f- 267 (549)
.+.+.+... +. +.+..|. ++..++++-++ .|| ++-|--+|+.+++++.-.
T Consensus 300 ~l~s~lrsf----vq----------k~l~~~t-----~~~f~~l~~vA---~l~-------p~lV~~Lip~i~q~l~~~E 350 (373)
T PF14911_consen 300 QLTSVLRSF----VQ----------KYLAHYT-----YQYFQFLEKVA---ELD-------PQLVISLIPTIRQSLKDSE 350 (373)
T ss_pred HHHHHHHHH----HH----------HHhhhhh-----HHHHHHHHHHH---HhC-------HHHHHHHHHHHHHHHHHHH
Confidence 333333222 11 2233332 22344444444 343 566788888888887765
Q ss_pred -ccCCChhhH
Q 008918 268 -LRGASGSKF 276 (549)
Q Consensus 268 -s~~v~st~f 276 (549)
.+|......
T Consensus 351 ~kRG~G~d~~ 360 (373)
T PF14911_consen 351 RKRGLGRDVA 360 (373)
T ss_pred HHhcCCcCHH
Confidence 444444333
No 127
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.12 E-value=5.5e+02 Score=31.17 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=117.4
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchh-------hHHHHHHHHHh
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-------KIVDILVQLLA 115 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~-------riaDVL~QLLq 115 (549)
.++-..+=|+.--.||...-|+|.+-=+.+--.|.-|.+..|-..+++=+-.+|+.+++.+. -.+-||-||-.
T Consensus 154 ~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~ 233 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN 233 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566667888888999999999999999999888889999999999999999999777644 35556677777
Q ss_pred hchhHHHHHH-------HHHHH---HHH-hh--chHHHHHHHHHhhhcCCCCC---ChHHHHHHHHHHHHhh--------
Q 008918 116 AEEIVERDAV-------HKALM---SLL-RQ--DVKASLTALFKHIGSVDEPS---TDEFIREKVLSFIRDK-------- 171 (549)
Q Consensus 116 sdd~~E~~~v-------~~aL~---sll-k~--d~k~tL~~lf~qI~~~~e~~---~eE~vREr~l~Fl~~k-------- 171 (549)
.--+.|.++- +==+. .+| +- |.....+-++.|+.+.-+.+ |.-++=|.+..-..-+
T Consensus 234 ~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvl 313 (866)
T KOG1062|consen 234 SGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVL 313 (866)
T ss_pred CCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHH
Confidence 7666665532 11112 222 22 45556677777777643332 2222333332211110
Q ss_pred -cccchhhhcCChHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHH
Q 008918 172 -VFPLKAELLKPQEEMERHITDLIKKSL-EDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEG 237 (549)
Q Consensus 172 -l~~l~~e~~~~~eE~Ee~i~~~ikKvL-~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~e 237 (549)
+.-|.+.+..+..-+.=.-+.-+.++. +|-++++-+. +.|+.||+--. .+.+-|..||.-.+.+
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-~tIleCL~DpD-~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-STILECLKDPD-VSIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-HHHHHHhcCCc-HHHHHHHHHHHHHHhc
Confidence 111223333332222333344455554 4777766654 44788888763 4666667777765554
No 128
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=49.42 E-value=1.2e+02 Score=33.59 Aligned_cols=159 Identities=19% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHH--HHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhh
Q 008918 138 KASLTALFKHIGSVDEPSTDEFIR--EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS 215 (549)
Q Consensus 138 k~tL~~lf~qI~~~~e~~~eE~vR--Er~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~ 215 (549)
..-|+.||.-|......+.|-.+| =|++.++.+.+.+.-..++
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il----------------------------------- 69 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL----------------------------------- 69 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH-----------------------------------
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhh
Q 008918 216 LSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEER 295 (549)
Q Consensus 216 l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~ 295 (549)
+.|+.++..-++ ||+||.--.-+-+++--.+.+.+. ....-+.-+...++|.|..+
T Consensus 70 -------------~~L~~il~~v~k-----NPsnP~FnHylFEsi~~lir~~~~--~~~~~v~~~E~~L~P~f~~I---- 125 (435)
T PF03378_consen 70 -------------QHLTAILKEVSK-----NPSNPRFNHYLFESIGALIRFVCE--ADPEAVSQFEEALFPPFQEI---- 125 (435)
T ss_dssp -------------HHHHHHHHHHHT-----S---HHHHHHHHHHHHHHHHHS-G--GGHH---HHHHHHHHHHHHH----
T ss_pred -------------HHHHHHHHHHHh-----CCCCcchhhhHHHHHHHHHHhccC--CChhHHHHHHHHHHHHHHHH----
Q ss_pred hhhHHHHHHHhCCCCChhhhhhhHHHHHHHh----hhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccccccc
Q 008918 296 KLDLLKALAEISPYTTPQDSRQILPSVAVLL----KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIV 371 (549)
Q Consensus 296 kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L----~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~ 371 (549)
=.+|..+.+|.+||.| ++-|.++. |+.....+.+|| +|...
T Consensus 126 ---------------Lq~dV~EF~PYvfQIla~Lle~~~~~~~--p~~y~~L~~~Ll---------~p~lW--------- 170 (435)
T PF03378_consen 126 ---------------LQQDVQEFIPYVFQILAQLLELRPSSPL--PDAYKQLFPPLL---------SPALW--------- 170 (435)
T ss_dssp ---------------HHTT-TTTHHHHHHHHHHHHHHSS--S----TTTGGGHHHHT---------SGGGG---------
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHc---------Ccchh---------
Q ss_pred cCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 008918 372 TGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKK 407 (549)
Q Consensus 372 Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikk 407 (549)
+++.-.--+.|+.++||++
T Consensus 171 -----------------e~~gniPalvrLL~a~i~k 189 (435)
T PF03378_consen 171 -----------------ERRGNIPALVRLLQAYIKK 189 (435)
T ss_dssp -----------------GSTTTHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcCcHHHHHHHHHHh
No 129
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=49.24 E-value=15 Score=41.89 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=11.0
Q ss_pred CCCCCCcccCCCCCCCCC
Q 008918 529 RGGIRGRGRGWGARGRGR 546 (549)
Q Consensus 529 ~~g~rgrgr~~g~rgr~~ 546 (549)
++++|||||+..+.|-++
T Consensus 671 ~~t~r~Rg~kea~k~tra 688 (707)
T KOG4501|consen 671 NGTGRGRGRKEAGKGTRA 688 (707)
T ss_pred cccccccccccccCcccc
Confidence 677777777654444433
No 130
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=49.16 E-value=2.9e+02 Score=34.33 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhhHHhhccCccc-hHHHHHHhhhhccccc---hhHHHHHhhhccccc
Q 008918 35 EGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL-SSRAVDAHLDLIEEEE---LGVRVQAIRGLPLFC 96 (549)
Q Consensus 35 ~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L-~e~Ai~a~lDLcEDed---~~IR~qAIk~Lp~lc 96 (549)
.....--+| ...++...+||-.++-.=+.+ ++-.++..-+|.-+.+ .+||-.|+.++.++|
T Consensus 640 ~~~~~rg~~-~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 640 DRYFYRGQG-TLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPNQIRDAAVSAVSDLV 704 (1133)
T ss_pred HHHhccchH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 333333334 777888899999888766654 5555555555544333 278989999888887
No 131
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.13 E-value=4.7e+02 Score=30.09 Aligned_cols=266 Identities=18% Similarity=0.202 Sum_probs=147.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCcc--c----hHHHHHHhhhhcc-ccchhHHHHHhhhcccccccCccchhh
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD--L----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSK 105 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~--L----~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~e~~~r 105 (549)
...++.++. .+.....-|.+.+.|.....++ . ..-++..++...+ ++.+.++..|--.|..+|-.+.|+...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 455566666 5555666667777777765543 2 3355666666665 888999999999999999887777555
Q ss_pred H-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhc
Q 008918 106 I-----VDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (549)
Q Consensus 106 i-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~d~--------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl 172 (549)
| +.+|.|||++-+....+.+=+||-.+..--| -+.|..|+..|..+.. .-.+|. +.+.-..|
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~---~~~lRn--~tW~LsNl 222 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK---LSMLRN--ATWTLSNL 222 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc---hHHHHH--HHHHHHHH
Confidence 4 5689999999999999888888876644322 2456667777763211 112332 22211111
Q ss_pred ccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHH
Q 008918 173 FPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 252 (549)
Q Consensus 173 ~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~ 252 (549)
-. .---.|.-+....++..+.+.|.....+=..----.+++|.-. + .+.++++.+ ...
T Consensus 223 cr--gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg----~----ne~iq~vi~------------~gv 280 (514)
T KOG0166|consen 223 CR--GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG----S----NEKIQMVID------------AGV 280 (514)
T ss_pred Hc--CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC----C----hHHHHHHHH------------ccc
Confidence 11 0002344467777888887777665432221111233333332 2 445555553 234
Q ss_pred HHHHHHHHHHhhhhh--------ccCCChhhHHH--HHHhhhcccCCCC----Chh-hhhhHHHHHHHhCCCCChhh---
Q 008918 253 IDRLISCLYMALPFF--------LRGASGSKFLN--YLNKHIIPVFDKL----PEE-RKLDLLKALAEISPYTTPQD--- 314 (549)
Q Consensus 253 idRli~cl~~Alp~f--------s~~v~st~f~~--y~~~~vlP~l~~l----~e~-~kl~lLK~lAE~s~~~~~~d--- 314 (549)
+-|++.++.+.-+-+ ..=|..+.... .+....||+|..+ |.+ .|-+..-.+.-++.....+.
T Consensus 281 v~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 281 VPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred hHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 567777766654322 11112222222 2344677766655 333 34455555555555332111
Q ss_pred -hhhhHHHHHHHh
Q 008918 315 -SRQILPSVAVLL 326 (549)
Q Consensus 315 -a~~~l~~i~~~L 326 (549)
-..++|.|..+|
T Consensus 361 ida~l~p~Li~~l 373 (514)
T KOG0166|consen 361 IDANLIPVLINLL 373 (514)
T ss_pred HHcccHHHHHHHH
Confidence 134566666655
No 132
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=48.34 E-value=12 Score=34.93 Aligned_cols=25 Identities=20% Similarity=0.574 Sum_probs=15.6
Q ss_pred hccHHHH--hhhhhcCCCCccCCCcccccccc
Q 008918 445 CNNILAM--SKPLHSKTPSFIGDKSVNLSWKE 474 (549)
Q Consensus 445 ~~NI~~l--i~~L~~~pPsf~~~~~itlSW~~ 474 (549)
+.|+.++ ++.|.+. -|. .-++||..
T Consensus 38 vpNL~Vik~mqSL~Sr--g~V---ke~f~Wrh 64 (124)
T PTZ00034 38 VPNLHVMMLMRSLKSR--GLV---KEQFAWQH 64 (124)
T ss_pred CccHHHHHHHHccccC--Cce---EEEEeeEE
Confidence 4555444 4666665 444 77899987
No 133
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.03 E-value=3.5e+02 Score=32.55 Aligned_cols=277 Identities=19% Similarity=0.242 Sum_probs=140.6
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhh---cc--ccchhHHHHHhhhccccc-------
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDL---IE--EEELGVRVQAIRGLPLFC------- 96 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDL---cE--Ded~~IR~qAIk~Lp~lc------- 96 (549)
-..+-..|+.+.. .+--+|.=+|.-+.|-+.+-|+...-....+-.+ .+ -+.|-|=.++=..++.|.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhc
Confidence 4456677887777 6778889999999999999995533222222111 11 334445444445555553
Q ss_pred ccC---ccchhhHHHHHHHHHhhch------hHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 008918 97 KDT---PEYLSKIVDILVQLLAAEE------IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 97 k~~---~e~~~riaDVL~QLLqsdd------~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~F 167 (549)
..+ ..+.+-.=+|+.+||..-| ..=+.++=.||+++++.-|+.+...+-.-.. .+-+|+=.-
T Consensus 484 ~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l---------~il~kl~q~ 554 (859)
T KOG1241|consen 484 VSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL---------VILEKLDQT 554 (859)
T ss_pred cCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH---------HHHHHHHHH
Confidence 111 1223446678888887633 3457788899999999988887666443321 112222222
Q ss_pred HHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHH----HHHHHHHhhccccCC-CCchhHHHH-HHHHHHHhhhc
Q 008918 168 IRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEF----RMFMDFLKSLSLFGE-KAPTERMKE-LIGIIEGQADL 241 (549)
Q Consensus 168 l~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF----~l~m~iL~~l~~~~t-~~~~gr~qe-Lv~~i~eqa~L 241 (549)
|...+-.+... ..-.|++..++..+..|+..|-. .+ +.+|.++- .+|++ ++.--+ .+ ++.+-.--.-|
T Consensus 555 i~~~~l~~~dr--~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lfl--ri~~s~~s~~v~-e~a~laV~tl~~~L 628 (859)
T KOG1241|consen 555 ISSQILSLADR--AQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFL--RIFESKRSAVVH-EEAFLAVSTLAESL 628 (859)
T ss_pred HHHHhccHhhH--HHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHH--HHHcCCccccch-HHHHHHHHHHHHHH
Confidence 22222222110 01235566666555555443332 22 33443322 22222 111000 22 22222222335
Q ss_pred cccCCCCChHHHHHHHHHHHHhhhhh-ccC-----CC-hhhHHHHHHhhhcccCCCC--------C-----hhhhhhHHH
Q 008918 242 DAQFNVSDADHIDRLISCLYMALPFF-LRG-----AS-GSKFLNYLNKHIIPVFDKL--------P-----EERKLDLLK 301 (549)
Q Consensus 242 d~~f~~sD~e~idRli~cl~~Alp~f-s~~-----v~-st~f~~y~~~~vlP~l~~l--------~-----e~~kl~lLK 301 (549)
...| ..+...|+..+.++|.=| -.+ |. -..+.+-+..+++|.-+.+ . .+.|--+|.
T Consensus 629 g~~F----~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS 704 (859)
T KOG1241|consen 629 GKGF----AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILS 704 (859)
T ss_pred hHhH----HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHH
Confidence 5555 346677777777777322 111 11 1344555555666643332 1 145778888
Q ss_pred HHHHhCCCCChhhhhhhHHHHHHHh
Q 008918 302 ALAEISPYTTPQDSRQILPSVAVLL 326 (549)
Q Consensus 302 ~lAE~s~~~~~~da~~~l~~i~~~L 326 (549)
+|.+++- +-..+-...++.|..+|
T Consensus 705 ~FgDIAl-aIg~~F~~Yl~~vm~ll 728 (859)
T KOG1241|consen 705 VFGDIAL-AIGADFEPYLEMVMPLL 728 (859)
T ss_pred HHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 8888754 12233444555555555
No 134
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=47.03 E-value=3.5e+02 Score=27.99 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=93.6
Q ss_pred hhHHHHH-HHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhccccc---------ccC-
Q 008918 32 KDYEGII-EAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFC---------KDT- 99 (549)
Q Consensus 32 ~~Y~~Il-~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lc---------k~~- 99 (549)
.-+..|| -+++ .++..+.+|=.-+.-|-=.-++++.+.+.-++...+.++..||+.|++.|-++. ...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3465655 4666 668888888888888888788888888888887777678999999999998873 111
Q ss_pred ---ccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---ch-HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 100 ---PEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DV-KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 100 ---~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---d~-k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
......+.|+|...|.++++.-..++=..|.-|+-. .+ ...|..|+-.--++.. .++..+|--+--|+..
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t-~~~~~LrQ~L~~Ffp~ 182 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPST-EDNQRLRQCLSVFFPV 182 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHH
Confidence 122456999999999999888777777777776644 33 5555555443332222 2233456555555543
No 135
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=46.60 E-value=4e+02 Score=29.01 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=76.4
Q ss_pred hHHHHHHHhc--CCHHHHHHHhhhhHHhhcc--Cc-cchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh--
Q 008918 33 DYEGIIEAAK--TSLKAKQLAAQLIPRFFKF--FP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-- 105 (549)
Q Consensus 33 ~Y~~Il~~~k--g~~k~K~LaaQfI~kffk~--FP-~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-- 105 (549)
+|-.|+...+ ...-|+.=|=-||.+|-.. .| ++..-.+.|++-+.|+.|-..|..++.-|-++|--+|+.+.+
T Consensus 68 d~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~g 147 (371)
T PF14664_consen 68 DIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECG 147 (371)
T ss_pred chhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcC
Confidence 4555666666 4466777777777777665 55 336677888999999999899999999999999999998766
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008918 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (549)
..-+|.+.+........+.+-.+++.++..
T Consensus 148 G~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 148 GIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred CHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 778888888874334555566666666654
No 136
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.04 E-value=1.2e+02 Score=31.29 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=47.5
Q ss_pred HHHHhhhhccccchhHHHHHhhhcccccccCccch----------hhHHHHHHHHHh--------hchhHHHHHHHHHHH
Q 008918 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL----------SKIVDILVQLLA--------AEEIVERDAVHKALM 130 (549)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~----------~riaDVL~QLLq--------sdd~~E~~~v~~aL~ 130 (549)
.+=.++-|++|.++.+|.+|++-|-.|...-+.-. +=+-|.|..+|- .+...-+.++--+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 35577889999999999999999999975333222 225566677776 455556677777777
Q ss_pred HHHhh
Q 008918 131 SLLRQ 135 (549)
Q Consensus 131 sllk~ 135 (549)
+|++.
T Consensus 200 ~L~~~ 204 (282)
T PF10521_consen 200 SLLKT 204 (282)
T ss_pred HHHHh
Confidence 77665
No 137
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=46.01 E-value=3.8e+02 Score=31.60 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHHHHHhhhhhhccccccChhh-HH------------------HHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHH
Q 008918 12 EKLYEFGERLNEAKDKSQNVKD-YE------------------GIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDA 72 (549)
Q Consensus 12 e~LY~~~~~L~~akd~~~~~~~-Y~------------------~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a 72 (549)
.-+|....-++++-++-.|..- -+ .++..+-+-+++-+=.-.||.+|| ..-+|+
T Consensus 430 wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY-------~ai~~~ 502 (858)
T COG5215 430 WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFY-------LAILNA 502 (858)
T ss_pred HHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHH-------HHHHHH
Confidence 3466666666676666555431 22 223333333333333344555554 345777
Q ss_pred hhhhcc--ccchhHHHHHhhhcccc---cccCccchhhHHHHHHHH
Q 008918 73 HLDLIE--EEELGVRVQAIRGLPLF---CKDTPEYLSKIVDILVQL 113 (549)
Q Consensus 73 ~lDLcE--Ded~~IR~qAIk~Lp~l---ck~~~e~~~riaDVL~QL 113 (549)
++.-.| ++|...|+.+.-.|-.+ |-| -|+|+++-.
T Consensus 503 Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d------~V~~~~a~~ 542 (858)
T COG5215 503 LVKGTELALNESNLRVSLFSALGTLILICPD------AVSDILAGF 542 (858)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhhcch------hHHHHHHHH
Confidence 776655 88999999988887766 543 367776643
No 138
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=45.61 E-value=6.6e+02 Score=30.82 Aligned_cols=219 Identities=16% Similarity=0.209 Sum_probs=115.8
Q ss_pred chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHh------cccccHHHH-HH
Q 008918 136 DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKS------LEDVTGAEF-RM 208 (549)
Q Consensus 136 d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKv------L~dVT~~EF-~l 208 (549)
.....|+.++....- +...=+|.+++.-...+...| ..|++.....+ ..+ -.|+|.... ..
T Consensus 363 ~g~~~l~~~y~~~~g-~~~~~~~~~~~~K~~i~~~~l----------~~E~~~L~~~l-~~i~~~~~~~rD~t~~~l~~a 430 (879)
T PRK14511 363 AGEEPLTELYARFTG-RPADFDELVRQAKRLVLDGSL----------AGEVERLAQLL-LRVARDDLRTRDFTLGALRRA 430 (879)
T ss_pred cchhHHHHHHHHhhC-CCCCHHHHHHHHHHHHHHHhh----------HHHHHHHHHHH-HHHHhhCcccccCCHHHHHHH
Confidence 445567777777642 222234455554443333333 22443332222 221 136665555 46
Q ss_pred HHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccC
Q 008918 209 FMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVF 288 (549)
Q Consensus 209 ~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l 288 (549)
+.+++.++|.|.|..+. ......|...|+..+.-.+...|- .....+.|+-.-++...
T Consensus 431 l~e~la~fpVYRtY~~~-----------------~~~~~~d~~~i~~a~~~ar~~~~~-----~~~~~~~~l~~~L~~~~ 488 (879)
T PRK14511 431 LVELIAAFPVYRTYLPA-----------------CGRSARDRQVIEQAAARARRRLPE-----ADWPVLDFLEDVLLGRA 488 (879)
T ss_pred HHHHHHcCCccCcCCCC-----------------CCCCHHHHHHHHHHHHHHHHhCCc-----cchHHHHHHHHHhcCCc
Confidence 89999999999987742 122233444555444333322221 12355566665555433
Q ss_pred -CCCChhhhhhHHHHHHHhCCCCChhhhhh---hHHHHHHHh---hhcCCCCCCCCccchHHHHHHHHHHHHhhh----c
Q 008918 289 -DKLPEERKLDLLKALAEISPYTTPQDSRQ---ILPSVAVLL---KYMPLRKTGGEEMNFTYVECLLYTFHHLAH----K 357 (549)
Q Consensus 289 -~~l~e~~kl~lLK~lAE~s~~~~~~da~~---~l~~i~~~L---~ymP~~~~~~~~l~fS~vEcLLyafh~L~~----K 357 (549)
...+++.+-..+....-+-++|++..|+- ..=..|.-| +.+...|. .+-.| .=+||.... .
T Consensus 489 ~~~~~~~~~~~~~~f~~rfQQ~tgpvmAKgvEDTaFYry~rL~slNEVGg~P~---~f~~s-----~~~FH~~~~~R~~~ 560 (879)
T PRK14511 489 ARELPRGRRKLRLEFAVRFQQLTGPVMAKGVEDTAFYRYNRLLSLNEVGGDPE---RFSAS-----VEDFHAANAERLRR 560 (879)
T ss_pred cccCchhhhHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhccCCCCcc---ccCCC-----HHHHHHHHHHHHHh
Confidence 22333333333444444556777777543 333445444 56665442 11111 235777654 4
Q ss_pred CchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008918 358 APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQ 410 (549)
Q Consensus 358 ~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikkL~~ 410 (549)
.|..++.. =| -| .+|-+|-|+||..|++.-...-..+.+
T Consensus 561 ~P~~m~at-----sT--------HD-TKRgEDvRARi~vLSE~p~~W~~~v~~ 599 (879)
T PRK14511 561 FPHSMLTT-----ST--------HD-TKRGEDVRARISVLSELPDEWAAAVER 599 (879)
T ss_pred CCccccch-----hh--------cc-ccccHHHHHHHHHHhcCHHHHHHHHHH
Confidence 57766542 13 25 689999999999999998887666553
No 139
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=45.51 E-value=42 Score=23.03 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.0
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHh
Q 008918 107 VDILVQLLAAEEIVERDAVHKALMSLLR 134 (549)
Q Consensus 107 aDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (549)
...|.|+|+++++.++.++-.+|-.+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999887764
No 140
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.40 E-value=65 Score=37.56 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=67.7
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhh-hcc---ccchhHHHHHhhhccccc--ccCccchhh
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLD-LIE---EEELGVRVQAIRGLPLFC--KDTPEYLSK 105 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lD-LcE---Ded~~IR~qAIk~Lp~lc--k~~~e~~~r 105 (549)
-++-+|-|+. .+.++..=+.|.|++----..+.-+.-.|.++. |-+ |.++.||++|++.|..+- .+|+| -+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HH
Confidence 4677778887 778888889999999888888776666666543 333 999999999999988774 45555 46
Q ss_pred HHHHHHHHHhhchhHHH
Q 008918 106 IVDILVQLLAAEEIVER 122 (549)
Q Consensus 106 iaDVL~QLLqsdd~~E~ 122 (549)
++-+|.-++|-|-+.|+
T Consensus 170 ~~n~l~~~vqnDPS~EV 186 (885)
T COG5218 170 IVNLLKDIVQNDPSDEV 186 (885)
T ss_pred HHHHHHHHHhcCcHHHH
Confidence 77788888888877765
No 141
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.09 E-value=3.9e+02 Score=32.46 Aligned_cols=207 Identities=20% Similarity=0.258 Sum_probs=120.3
Q ss_pred hccCccchHHHHHHhhhhcccc-chhHHHHHhhhcccccccCcc--------chhhHHHHHHHHHhhchhHH-HHHHHHH
Q 008918 59 FKFFPDLSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPE--------YLSKIVDILVQLLAAEEIVE-RDAVHKA 128 (549)
Q Consensus 59 fk~FP~L~e~Ai~a~lDLcEDe-d~~IR~qAIk~Lp~lck~~~e--------~~~riaDVL~QLLqsdd~~E-~~~v~~a 128 (549)
+|.=-|+...+-.|.+.|..|+ |.-||..+++.+-...+| |+ |++-+=+-|-+||.+-+..+ ...|=+.
T Consensus 517 vq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD-~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ 595 (978)
T KOG1993|consen 517 VQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDD-WNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNL 595 (978)
T ss_pred eechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhh-ccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3333455666777888888888 889999999998777654 33 35667788889998844433 3344444
Q ss_pred HHHHHhh------chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhccccc
Q 008918 129 LMSLLRQ------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVT 202 (549)
Q Consensus 129 L~sllk~------d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT 202 (549)
|..++-. +=.+++-.++.++= ++.+++..+|-.+|.-++.=|..++. ...++--++...|..+-.--+
T Consensus 596 ls~lI~r~~e~I~P~~~~ivq~lp~LW--e~s~~e~lLr~alL~~L~~lV~alg~----qS~~~~~fL~pVIel~~D~~s 669 (978)
T KOG1993|consen 596 LSTLIERVSEHIAPYASTIVQYLPLLW--EESEEEPLLRCALLATLRNLVNALGA----QSFEFYPFLYPVIELSTDPSS 669 (978)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH--hhhccCcHHHHHHHHHHHHHHHHhcc----CCccchHHHHHHHHHhcCCCC
Confidence 4444322 22445555555554 45556667899999888877777654 245778888888887643222
Q ss_pred HH-------HHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCC--Ch
Q 008918 203 GA-------EFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGA--SG 273 (549)
Q Consensus 203 ~~-------EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v--~s 273 (549)
++ -.++--.+|...+.+ + -+|+.++... ...|++--+-+..++-+++... .+
T Consensus 670 P~hv~L~EDgmeLW~~~L~n~~~l---~-----p~ll~L~p~l-----------~~~iE~ste~L~t~l~Ii~sYilLd~ 730 (978)
T KOG1993|consen 670 PEHVYLLEDGMELWLTTLMNSQKL---T-----PELLLLFPHL-----------LYIIEQSTENLPTVLMIISSYILLDN 730 (978)
T ss_pred CceeehhhhHHHHHHHHHhccccc---C-----HHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHhhcc
Confidence 21 223333344444444 2 2334333321 1133444444555555554433 24
Q ss_pred hhHHHHHHhhhcccCCCC
Q 008918 274 SKFLNYLNKHIIPVFDKL 291 (549)
Q Consensus 274 t~f~~y~~~~vlP~l~~l 291 (549)
+.|++=+...|+-.++++
T Consensus 731 ~~fl~~y~~~i~k~~~~~ 748 (978)
T KOG1993|consen 731 TVFLNDYAFGIFKKLNDL 748 (978)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666655554
No 142
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=43.01 E-value=1.7e+02 Score=34.45 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcccccHHHH------------HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHH
Q 008918 185 EMERHITDLIKKSLEDVTGAEF------------RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 252 (549)
Q Consensus 185 E~Ee~i~~~ikKvL~dVT~~EF------------~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~ 252 (549)
+-.|...+.+-++|+|.|.+|. .-|++.+-.++-.. +..+|+.++.+-.+| |+ -+.+.
T Consensus 535 ~n~El~~Di~~Ril~dfs~~~It~~~k~l~~~dl~~~I~~li~~~~~~------q~~~Ll~~vID~~GL---fn-~~~~~ 604 (670)
T PF10395_consen 535 ENDELFLDISLRILQDFSKDEITQEIKKLNKVDLNNFINFLIKLNNNE------QLWQLLSLVIDSNGL---FN-WDMET 604 (670)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHhhccccHHHHHHHHhccCCcc------chHHHHHHHhhcccc---cc-CCHHH
Confidence 3344555555555555555554 45666666665541 237788888876665 66 36778
Q ss_pred HHHHHHHHHHhhhhh
Q 008918 253 IDRLISCLYMALPFF 267 (549)
Q Consensus 253 idRli~cl~~Alp~f 267 (549)
|+|+.+.+..=+--.
T Consensus 605 l~~L~~~Id~kv~~l 619 (670)
T PF10395_consen 605 LEKLSEIIDSKVEVL 619 (670)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887555444333
No 143
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=42.77 E-value=4.8e+02 Score=28.39 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=57.0
Q ss_pred hhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHHH
Q 008918 274 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTFH 352 (549)
Q Consensus 274 t~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh 352 (549)
.+||+++.-+++-.+...+.+.|...|..|+-+..++...--..-++.|+.+| .-+..+ ++++..+.+++|.-.
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~-- 392 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMI-- 392 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH--
Confidence 68888888888888887766789999999999999887666555566666666 555443 244666666665544
Q ss_pred HhhhcCchhh
Q 008918 353 HLAHKAPNAT 362 (549)
Q Consensus 353 ~L~~K~P~~l 362 (549)
....|+.+
T Consensus 393 --l~~~~~~i 400 (415)
T PF12460_consen 393 --LEEAPELI 400 (415)
T ss_pred --HHcCHHHH
Confidence 34456654
No 144
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=42.67 E-value=7.7e+02 Score=30.78 Aligned_cols=253 Identities=18% Similarity=0.158 Sum_probs=139.4
Q ss_pred ccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc-hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch-
Q 008918 60 KFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV- 137 (549)
Q Consensus 60 k~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~-~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~- 137 (549)
+-=-|...+.+..++.+.||-...|.--|||=|--|...-+|+ +.-++|-|+-=|-+...+=++.-.-+|......=|
T Consensus 39 ~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 39 KLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred hccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 3344667788999999999999999999999998887555554 67788888877767666666666666665544422
Q ss_pred ----------HHHHHHHHHhhhcCCCCCChH-HHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHH
Q 008918 138 ----------KASLTALFKHIGSVDEPSTDE-FIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEF 206 (549)
Q Consensus 138 ----------k~tL~~lf~qI~~~~e~~~eE-~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF 206 (549)
-.++++.|++-.. .+++. .++=.++.-+.+-+...+.-+- +.+.-|+....--|+ +..+.
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~---~qe~~sai~~e~lDil~d~lsr~g~ll~----~fh~~il~~l~~ql~--s~R~a 189 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAIS---KQEDVSAIKCEVLDILADVLSRFGTLLP----NFHLSILKCLLPQLQ--SPRLA 189 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhh---hcccchhhHHHHHHHHHHHHHhhcccCc----chHHHHHHHHhhccc--ChHHH
Confidence 1234445554432 22333 2566666555553333222111 123333322211111 11111
Q ss_pred --HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhh----hh-ccCCChhhHHHH
Q 008918 207 --RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALP----FF-LRGASGSKFLNY 279 (549)
Q Consensus 207 --~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp----~f-s~~v~st~f~~y 279 (549)
..-.-.|+.|-++. ++ .-.++++..- |+..-++.....+.-.|+|+-...- =| ++.....+++.=
T Consensus 190 VrKkai~~l~~la~~~---~~---~ly~~li~~L--l~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~ 261 (1233)
T KOG1824|consen 190 VRKKAITALGHLASSC---NR---DLYVELIEHL--LKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVAD 261 (1233)
T ss_pred HHHHHHHHHHHHHHhc---CH---HHHHHHHHHH--HhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHH
Confidence 11122334444432 21 2233333322 2223334666788888998765422 22 344445777777
Q ss_pred HHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCC
Q 008918 280 LNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKT 334 (549)
Q Consensus 280 ~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~ 334 (549)
||+++ +.-|++.+--.|..|--+-.+|. .+.-...|-|.+++ +|+--.|.
T Consensus 262 y~~~~----e~~dDELrE~~lQale~fl~rcp-~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 262 YCNKI----EEDDDELREYCLQALESFLRRCP-KEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred Hhccc----ccCcHHHHHHHHHHHHHHHHhCh-hhhcccchHHHHHHHHHhccCCC
Confidence 78776 44455555555666555555553 34444778888888 88876653
No 145
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=42.63 E-value=38 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=26.5
Q ss_pred hccCccc--hHHHHHHhhhhccccchhHHHHHhhh
Q 008918 59 FKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRG 91 (549)
Q Consensus 59 fk~FP~L--~e~Ai~a~lDLcEDed~~IR~qAIk~ 91 (549)
....|++ ....++++..-+.|+++.||.+|+.-
T Consensus 7 v~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 7 VEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3456777 45888888999999999999999863
No 146
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=41.46 E-value=18 Score=40.75 Aligned_cols=17 Identities=47% Similarity=0.749 Sum_probs=9.3
Q ss_pred hcCCCCCCCCCCCCccc
Q 008918 521 LEGISRGGRGGIRGRGR 537 (549)
Q Consensus 521 ~~g~~~~~~~g~rgrgr 537 (549)
+.|.|.||.||.|||+-
T Consensus 454 ssg~s~~~grgsrg~~~ 470 (790)
T PF07794_consen 454 SSGRSQGGGRGSRGRSS 470 (790)
T ss_pred ccccccCCCcCCCCCCc
Confidence 33556566555555543
No 147
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.82 E-value=1.8e+02 Score=26.92 Aligned_cols=69 Identities=13% Similarity=0.304 Sum_probs=42.4
Q ss_pred HHHHHHHHH-hhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChH
Q 008918 106 IVDILVQLL-AAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQE 184 (549)
Q Consensus 106 iaDVL~QLL-qsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~e 184 (549)
+.-+|.++| .++|+..+.++=+=|-.+++..|.+ ..+..++. +++++|..+. ++..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg----------~K~~vM~Lm~-----------h~d~ 100 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLG----------AKERVMELMN-----------HEDP 100 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHS----------HHHHHHHHTS------------SSH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcC----------hHHHHHHHhc-----------CCCH
Confidence 444555566 5578888888888888888888876 44445443 6777776543 2355
Q ss_pred HHHHHHHHHHHHh
Q 008918 185 EMERHITDLIKKS 197 (549)
Q Consensus 185 E~Ee~i~~~ikKv 197 (549)
|+...-+-.+.|.
T Consensus 101 eVr~eAL~avQkl 113 (119)
T PF11698_consen 101 EVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6655555555444
No 148
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=39.88 E-value=50 Score=38.12 Aligned_cols=11 Identities=0% Similarity=0.244 Sum_probs=8.8
Q ss_pred CcccccccccC
Q 008918 466 KSVNLSWKEAT 476 (549)
Q Consensus 466 ~~itlSW~~~~ 476 (549)
..|.++|..+.
T Consensus 297 r~I~V~~Akp~ 307 (578)
T TIGR01648 297 SEIEVTLAKPV 307 (578)
T ss_pred EEEEEEEccCC
Confidence 69999998654
No 149
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=39.86 E-value=4e+02 Score=26.73 Aligned_cols=142 Identities=16% Similarity=0.144 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHhhhhhhccccccChhh-HHHHHHHhcCCHHHH-----HHHhhhhHHhhccCccchHHHHHHhhhh---
Q 008918 6 DEAKQIEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTSLKAK-----QLAAQLIPRFFKFFPDLSSRAVDAHLDL--- 76 (549)
Q Consensus 6 ~~~~~ie~LY~~~~~L~~akd~~~~~~~-Y~~Il~~~kg~~k~K-----~LaaQfI~kffk~FP~L~e~Ai~a~lDL--- 76 (549)
.+...+-.+.+.-..|...++ ....- -+.|-..+++..... +|-+.+..+==.+||.|+.-.....++.
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSS 90 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccc
Confidence 344455666666666666664 33333 444444666554444 4444444444456788877666655552
Q ss_pred cc--ccchhHHHHHhhhcccccccCccchhhHHHHHHHHH-hhchhHHHHHHHHHHHHHHhh---chHHHHHHHHHhhh
Q 008918 77 IE--EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL-AAEEIVERDAVHKALMSLLRQ---DVKASLTALFKHIG 149 (549)
Q Consensus 77 cE--Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLL-qsdd~~E~~~v~~aL~sllk~---d~k~tL~~lf~qI~ 149 (549)
+- ++.-...+..--.+-.+|+..|++-.-+.-.|+++| +.++++-....=.+|..+... |+..+..++-.++.
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~ 169 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLS 169 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 12 333333343223444578888885555555668888 677777777777777888755 66777777777663
No 150
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=39.82 E-value=1.7e+02 Score=30.81 Aligned_cols=170 Identities=21% Similarity=0.326 Sum_probs=88.1
Q ss_pred HHHHhhhhccc-cchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHH------HHHHHhhchHHHH
Q 008918 69 AVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKA------LMSLLRQDVKASL 141 (549)
Q Consensus 69 Ai~a~lDLcED-ed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~a------L~sllk~d~k~tL 141 (549)
.+...++|+-- .=-..|..-|+.|-.||..+.-||| ++=.|..+|.+-+..... +++ +...++..+.-.=
T Consensus 114 i~~g~i~L~pt~ry~Plrlh~ir~L~~L~~~t~~fIP-l~~~lleiL~~~~~~~~~--k~~~~kp~d~~~~Lk~~k~~l~ 190 (299)
T PF03715_consen 114 IIIGVIKLIPTARYFPLRLHCIRSLNRLSQSTGTFIP-LAPYLLEILESSEFNKKP--KKSSMKPLDFECLLKVSKSQLR 190 (299)
T ss_pred HHHHHHhhcCccccCchHHHHHHHHHHHHHhcCceEe-cHHHHHHHHhChhhcCCC--CCCCCCCcCHHHHhhccHHHhc
Confidence 44444444331 2234788899999999988877765 333333444432211110 011 1222222222111
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCC
Q 008918 142 TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGE 221 (549)
Q Consensus 142 ~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t 221 (549)
+.-| -|.+.+.++.-|.+.+......+-=| |.---++..+|+.+.......|..
T Consensus 191 t~~~-----------~d~v~e~~~~LL~e~la~~s~sIaFP--El~~pii~~LKr~~K~~k~~~~~~------------- 244 (299)
T PF03715_consen 191 TRQF-----------QDGVIEEVYELLLEYLAIYSYSIAFP--ELALPIIVQLKRFLKSCKNAKFKR------------- 244 (299)
T ss_pred cHHH-----------HHHHHHHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHHHHHcccHHHHH-------------
Confidence 1111 12344455555555444433333322 666667777777766665555532
Q ss_pred CCchhHHHHHHHHHHHhhh------ccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHH
Q 008918 222 KAPTERMKELIGIIEGQAD------LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN 281 (549)
Q Consensus 222 ~~~~gr~qeLv~~i~eqa~------Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~ 281 (549)
.++.|++-+.++++ -.-.|.+.|.+.|+.+.+.++ ..+|++-.|+.
T Consensus 245 -----~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~---------~~~tPl~~~~~ 296 (299)
T PF03715_consen 245 -----QIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESELK---------WEGTPLGKYYA 296 (299)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc---------cCCCCHHHHHH
Confidence 23556666666544 234599999999998887332 44577776664
No 151
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=39.20 E-value=20 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred HHHHhhhhccccchhHHHHHhhhccccc
Q 008918 69 AVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (549)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAIk~Lp~lc 96 (549)
+|..++.|+..+++.|+.+|+..|-.+|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6777888888778888888887776665
No 152
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.07 E-value=2.9e+02 Score=33.44 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhccccCCCCChHHH-HHHHHHHH
Q 008918 229 KELIGIIEGQADLDAQFNVSDADHI-DRLISCLY 261 (549)
Q Consensus 229 qeLv~~i~eqa~Ld~~f~~sD~e~i-dRli~cl~ 261 (549)
+.|++.+.+.+..|...+.-|...+ .+++.|..
T Consensus 540 kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~ 573 (968)
T KOG1060|consen 540 KLLVQYVFELARYDLSYDIRDRARFLRQLISPLE 573 (968)
T ss_pred HHHHHHHHHHhccCCCcchhHHHHHHHHHhccHH
Confidence 6677888888888877777666544 44444443
No 153
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=38.86 E-value=6.5e+02 Score=30.53 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=85.6
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcc
Q 008918 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIP 286 (549)
Q Consensus 207 ~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP 286 (549)
..+.++|.++|.|.|..+. .-.+.+|..+|++.+.-.+.-.| ++.- .-+.| .+++++
T Consensus 432 ~Ai~ella~~pvYRTY~~~-----------------~G~~~~d~~~i~~~~~~ak~~~~----~~~~-~~~~~-l~~~l~ 488 (889)
T COG3280 432 RALAELLAAFPVYRTYADY-----------------EGIGASDPCILREAVEEAKALAP----GLDL-IAAAF-LSRVLG 488 (889)
T ss_pred HHHHHHHHhCcchhcccCc-----------------cCCCcccHHHHHHHHHHHhhcCC----ccCh-HHHHH-HHHhcC
Confidence 6688888899998876642 22345677777766664433333 2211 11222 234444
Q ss_pred cCCCCChhhhhh--HHHHHHHhCCCCChhhh---hhhHHHHHHHh---hhcCCCCCCCCccchHHHHHHHHHHHHhhhc-
Q 008918 287 VFDKLPEERKLD--LLKALAEISPYTTPQDS---RQILPSVAVLL---KYMPLRKTGGEEMNFTYVECLLYTFHHLAHK- 357 (549)
Q Consensus 287 ~l~~l~e~~kl~--lLK~lAE~s~~~~~~da---~~~l~~i~~~L---~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K- 357 (549)
.+.+.+++++ ++--|.++ |++..| +...=..|.-| +.+...|. -+-+|.- -||+.+..
T Consensus 489 --ge~~~~~~~~~~f~~RfQQl---sgpv~AK~VEDT~fYr~~rLlSlNEVG~dP~---~F~~s~~-----~FH~~~~~R 555 (889)
T COG3280 489 --GEPAGDRELRAEFAVRFQQL---SGPVMAKAVEDTTFYRYARLLSLNEVGGDPR---RFGVSAA-----EFHHAMATR 555 (889)
T ss_pred --CCCchhhHHHHHHHHHHHHh---ccHHHhhhhhhhhhhHHhhhhhHhhccCCch---hcCCCHH-----HHHHHHHHH
Confidence 2222234443 34445544 555543 33334445443 56655442 1333332 48887654
Q ss_pred ---CchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008918 358 ---APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQ 410 (549)
Q Consensus 358 ---~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikkL~~ 410 (549)
-|..++.. -| -| .++=+|-|+||..|.+.=+.+-..+..
T Consensus 556 a~~wP~am~at-----sT--------HD-TKRGED~RARl~vLSEiP~~W~e~v~~ 597 (889)
T COG3280 556 ARLWPHAMLAT-----ST--------HD-TKRGEDVRARLNVLSEIPQEWAEFVNR 597 (889)
T ss_pred HhcCchhhhcc-----cc--------cc-cccchhHHHHHHHhhcChHHHHHHHHH
Confidence 36666543 12 25 577899999999999998887766653
No 154
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=38.71 E-value=21 Score=33.36 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=7.3
Q ss_pred HHhhhhhcCCCC
Q 008918 450 AMSKPLHSKTPS 461 (549)
Q Consensus 450 ~li~~L~~~pPs 461 (549)
.-++..+|=||.
T Consensus 75 eyLR~yL~LP~e 86 (124)
T PTZ00034 75 EYLRTYLHLPPD 86 (124)
T ss_pred HHHHHHhCCCcc
Confidence 345666776655
No 155
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=38.69 E-value=42 Score=31.89 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccch
Q 008918 8 AKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLS 66 (549)
Q Consensus 8 ~~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~ 66 (549)
.+.||+|-.+|+. +..|-+..-.-|..||.--+.....|.+=+|.++=|||-|-.+.
T Consensus 14 ~~eIe~LK~yfNa--s~sdv~dgg~lFl~iLknwkEesekKIi~SqIVs~Y~kiFe~~k 70 (138)
T PF00714_consen 14 IKEIEKLKNYFNA--SNSDVADGGPLFLDILKNWKEESEKKIIQSQIVSFYLKIFENLK 70 (138)
T ss_dssp HHHHHHHHHHCTT--TSCCCCTTS-SSHHHHHHTTTCCCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCC--CchhhccCCchHHHHHhhhhhccchhhHHHHHHHHHHHHHHHcc
Confidence 4579999999932 11222355677999999999777788999999999999887774
No 156
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=38.65 E-value=49 Score=34.44 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=8.3
Q ss_pred CCCcccCCCCCCCCCCCC
Q 008918 532 IRGRGRGWGARGRGRGYR 549 (549)
Q Consensus 532 ~rgrgr~~g~rgr~~~~~ 549 (549)
.|..+++.|+++-|++||
T Consensus 242 ~Rr~~~~~~~~~~~~~~r 259 (260)
T KOG2202|consen 242 ERRSGRRGGTGLQGRYYR 259 (260)
T ss_pred cccccccCCccccccccc
Confidence 444444444444555554
No 157
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.57 E-value=7.6e+02 Score=29.52 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=106.6
Q ss_pred HHHHHhhhcccccccCccchh-----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-chHHHHHHHHHhhhcCCCCCCh
Q 008918 84 VRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIGSVDEPSTD 157 (549)
Q Consensus 84 IR~qAIk~Lp~lck~~~e~~~-----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-d~k~tL~~lf~qI~~~~e~~~e 157 (549)
|-...|+=+-.+|+..|||++ ||+==|+-+|.+-...=+-.+.+++=-+-+. -|-.+|..|++.+. ..|
T Consensus 704 v~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-----vqe 778 (975)
T COG5181 704 VVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-----VQE 778 (975)
T ss_pred HhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-----HHH
Confidence 566778888888999999865 5777777777776666666665555544443 56666666666554 222
Q ss_pred HHHH--------------------------------------HHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcc
Q 008918 158 EFIR--------------------------------------EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLE 199 (549)
Q Consensus 158 E~vR--------------------------------------Er~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~ 199 (549)
-+.| -|.++|.-+.+.....++ --.|+.++.-.|.
T Consensus 779 Rq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY-------vy~itPlleDAlt 851 (975)
T COG5181 779 RQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY-------VYSITPLLEDALT 851 (975)
T ss_pred HHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHhhhc
Confidence 2222 233444443333322222 2346677777888
Q ss_pred cccHHHHHHHHHHHhhccccCCCCchhH---HHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhH
Q 008918 200 DVTGAEFRMFMDFLKSLSLFGEKAPTER---MKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKF 276 (549)
Q Consensus 200 dVT~~EF~l~m~iL~~l~~~~t~~~~gr---~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f 276 (549)
|-.+.--..-|.+.+.|.+.-..+ |. +--|+.++-- .-|+++ |..|.++.+|+. -|+.-.++..|
T Consensus 852 DrD~vhRqta~nvI~Hl~Lnc~gt--g~eda~IHLlNllwp-----NIle~s-Phvi~~~~Eg~e----~~~~~lg~g~~ 919 (975)
T COG5181 852 DRDPVHRQTAMNVIRHLVLNCPGT--GDEDAAIHLLNLLWP-----NILEPS-PHVIQSFDEGME----SFATVLGSGAM 919 (975)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCc--ccHHHHHHHHHHhhh-----hccCCC-cHHHHHHHHHHH----HHHHHhccHHH
Confidence 777777777888888877753323 33 1113333221 223333 455666666554 35555567899
Q ss_pred HHHHHhhhcc
Q 008918 277 LNYLNKHIIP 286 (549)
Q Consensus 277 ~~y~~~~vlP 286 (549)
++|+..-+|.
T Consensus 920 m~Yv~qGLFH 929 (975)
T COG5181 920 MKYVQQGLFH 929 (975)
T ss_pred HHHHHHhccC
Confidence 9999988876
No 158
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=38.29 E-value=1.1e+02 Score=36.53 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=72.3
Q ss_pred HhhhhHHhhccCccc--hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh--HHHHHHHHHhhchhHHHHHHH
Q 008918 51 AAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--IVDILVQLLAAEEIVERDAVH 126 (549)
Q Consensus 51 aaQfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r--iaDVL~QLLqsdd~~E~~~v~ 126 (549)
|++.+.+-+..+|+- ..+.-.-.--||.|+++.||..+=+.+..+.+--+...-+ +-=.+.+|+..|..+++.++-
T Consensus 218 acglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~ 297 (759)
T KOG0211|consen 218 ACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAV 297 (759)
T ss_pred hhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHH
Confidence 346666666666642 2333344457999999999999999999997543332111 333457889999999999999
Q ss_pred HHHHHHHhh-chH-HHHHHHHHhhhcCCCCCChHHHHHHHHH
Q 008918 127 KALMSLLRQ-DVK-ASLTALFKHIGSVDEPSTDEFIREKVLS 166 (549)
Q Consensus 127 ~aL~sllk~-d~k-~tL~~lf~qI~~~~e~~~eE~vREr~l~ 166 (549)
+++.+++.. +.. .+-..++.-+. .....+...+|..+.+
T Consensus 298 ~~~~~l~~l~~~~~d~~~~~~~~l~-~~~~d~~~~v~~~~~~ 338 (759)
T KOG0211|consen 298 ESLVSLLDLLDDDDDVVKSLTESLV-QAVEDGSWRVSYMVAD 338 (759)
T ss_pred HHHHHHHHhcCCchhhhhhhhHHHH-HHhcChhHHHHHHHhh
Confidence 999999887 333 22222222222 1122444456665554
No 159
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=38.11 E-value=68 Score=29.07 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=44.5
Q ss_pred chhHHHHHhhhcccccccCccc---hhhHHHHHHHHHhh-ch----hHHHHHHHHHHHHHHhhchHHHHHHHHHhhh
Q 008918 81 ELGVRVQAIRGLPLFCKDTPEY---LSKIVDILVQLLAA-EE----IVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (549)
Q Consensus 81 d~~IR~qAIk~Lp~lck~~~e~---~~riaDVL~QLLqs-dd----~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~ 149 (549)
|......|++..|.|-+-++.| +...|.=|++.|.. ++ +.=-..-.+||++++-..|..+..-|++++-
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~~~~L~~~f~ 94 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKVAPYLTEEFF 94 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGHHH-HHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 7888889999999998777773 55555444444443 32 2223567899999999999988888888886
No 160
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.14 E-value=36 Score=40.16 Aligned_cols=77 Identities=25% Similarity=0.231 Sum_probs=42.4
Q ss_pred ccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
|+|+.+--+-++-|..-.-+=||+.||=-+-.+|-..||-+.---+=|.-=|-+.||....++=+.+.+|-+-+|+.
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555554
No 161
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=37.04 E-value=1.2e+02 Score=28.06 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHH-HhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHH
Q 008918 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIE-AAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQ 87 (549)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~-~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~q 87 (549)
...||||...+-+.+.-+.+ -..+-.++.. ..+...-.++|-+ +.-+|...|-++-++.|+.
T Consensus 18 t~~eKLy~~a~~~~~~i~~p-l~~a~~EF~~~~~~~~ev~~~l~~-i~~~~~~~~~~ileeGI~~--------------- 80 (131)
T PF08360_consen 18 TATEKLYGMAEHMLDDIQTP-LSKAGEEFYSNQSKNPEVLEKLNE-IRRKYLEFFQKILEEGIDS--------------- 80 (131)
T ss_dssp SHHHHHHHHHHHHHHSSSGG-GHHHHHHHHHHCSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHTT---------------
T ss_pred CHHHHHHHHHHHHHHHhccH-HHHHHHHHHHcccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHc---------------
Confidence 35899999998776443322 1122333333 3455556666655 5555655555555444432
Q ss_pred HhhhcccccccCccchhhH----HHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008918 88 AIRGLPLFCKDTPEYLSKI----VDILVQLLAAEEIVERDAVHKALMSLL 133 (549)
Q Consensus 88 AIk~Lp~lck~~~e~~~ri----aDVL~QLLqsdd~~E~~~v~~aL~sll 133 (549)
=.|+.+|++-++.+ -|-|.|+.-..+..|+..+.+..+++|
T Consensus 81 -----GEF~~~dv~~~a~il~s~l~GL~~~~~~~~~~e~~~l~~~ai~if 125 (131)
T PF08360_consen 81 -----GEFSIDDVEELAYILMSLLDGLSQWYYEKDKEELEALYRKAIDIF 125 (131)
T ss_dssp -----TSS--STHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHH
T ss_pred -----CcccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 23555555554442 344455555566677777766666654
No 162
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=36.89 E-value=6.4e+02 Score=30.57 Aligned_cols=134 Identities=22% Similarity=0.329 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHh
Q 008918 184 EEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA 263 (549)
Q Consensus 184 eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~A 263 (549)
.++-|.++..|..+|.+++...+...... +...+.. +.-.+-|+++.++ |++++.-+++. +++-+-+.
T Consensus 185 ~~i~E~LL~IiE~ll~ea~~~~~~~~~~~---~~~~~~~---~~~~~~v~~lL~~--l~s~~~r~~~~----i~~~l~Ri 252 (802)
T PF13764_consen 185 AEIAEQLLEIIESLLSEANSSSSSESKSS---SSLSGSE---EQDKEQVEMLLER--LNSPFVRSNPQ----ILQALARI 252 (802)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhcccc---ccccccc---cccHHHHHHHHHH--hcCccccCCHH----HHHHHHHH
Confidence 46677777888888877776555443322 1122100 0126678888876 44666655553 44555568
Q ss_pred hhhhccCCCh--hhHHHHHHhhhcccCCCCCh------hhhhhHHHHHHHhCCCCCh-hhh------hhhHHHHHHHh-h
Q 008918 264 LPFFLRGASG--SKFLNYLNKHIIPVFDKLPE------ERKLDLLKALAEISPYTTP-QDS------RQILPSVAVLL-K 327 (549)
Q Consensus 264 lp~fs~~v~s--t~f~~y~~~~vlP~l~~l~e------~~kl~lLK~lAE~s~~~~~-~da------~~~l~~i~~~L-~ 327 (549)
+||+..|-.. ..+++|+...+ .|+..+. ..+++.+-.+++..|--.. +.- .-++...++-| +
T Consensus 253 LP~Lt~G~~e~m~~Lv~~F~p~l--~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 253 LPFLTYGNEEKMDALVEHFKPYL--DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred hhHHhcCCHHHHHHHHHHHHHhc--ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 9998776553 44444443222 5666642 2466666666666653210 111 22345556666 6
Q ss_pred hcCC
Q 008918 328 YMPL 331 (549)
Q Consensus 328 ymP~ 331 (549)
+.|.
T Consensus 331 ~~P~ 334 (802)
T PF13764_consen 331 HFPS 334 (802)
T ss_pred hCcc
Confidence 7775
No 163
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=36.76 E-value=1.8e+02 Score=34.44 Aligned_cols=118 Identities=21% Similarity=0.296 Sum_probs=58.8
Q ss_pred HhhhhHHhhccCccchHHHHHHhhhhcc-ccch---------------hHHHHHhhhccccccc--CccchhhHHHHH--
Q 008918 51 AAQLIPRFFKFFPDLSSRAVDAHLDLIE-EEEL---------------GVRVQAIRGLPLFCKD--TPEYLSKIVDIL-- 110 (549)
Q Consensus 51 aaQfI~kffk~FP~L~e~Ai~a~lDLcE-Ded~---------------~IR~qAIk~Lp~lck~--~~e~~~riaDVL-- 110 (549)
+.+++... .+|-|-.=.|+.=+=||-+ |... .=|++--|=||-||.+ |..+ +++||
T Consensus 258 ~~~~l~~~-~ff~D~~~~aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~---vp~~LP~ 333 (700)
T KOG2137|consen 258 TLDLLLSI-PFFSDPGLKALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKM---VPIVLPL 333 (700)
T ss_pred chhhhhcc-cccCCchhhhhhhcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccc---cccccch
Confidence 55554432 3455555555555555555 2221 1366777778888742 1122 44554
Q ss_pred HHHHhhchhHH--HHHHHHHHHHHHh-hchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhc
Q 008918 111 VQLLAAEEIVE--RDAVHKALMSLLR-QDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (549)
Q Consensus 111 ~QLLqsdd~~E--~~~v~~aL~sllk-~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl 172 (549)
++++....+.. -..+.-+|..+++ .||+-++-=||.....--+--..|.+.+.++.+|..-+
T Consensus 334 v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~ 398 (700)
T KOG2137|consen 334 VLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSL 398 (700)
T ss_pred hhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHh
Confidence 44444433332 3455666777777 67777666666655211111223445555555554444
No 164
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=36.23 E-value=1.8e+02 Score=34.03 Aligned_cols=134 Identities=24% Similarity=0.283 Sum_probs=85.5
Q ss_pred cChhhHHHHHHHh---cCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccc---hhHHHHHhhhcccccccCccc
Q 008918 29 QNVKDYEGIIEAA---KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE---LGVRVQAIRGLPLFCKDTPEY 102 (549)
Q Consensus 29 ~~~~~Y~~Il~~~---kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed---~~IR~qAIk~Lp~lck~~~e~ 102 (549)
+....|..+|..+ +|.-+-|+-+-.-|..-.++-|+..|.|+.-+-+.+||-+ ..||+=.|=|=-.=.-.+|
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P-- 485 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP-- 485 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc--
Confidence 3445566666533 5999999999999999999999999999999999998865 4456666533211111222
Q ss_pred hhh-HHHHHHHHHhhchhHHHHHHHHHHHHHH--hhc--hHHHHHHHHHhhhcCCCCCChHHHHHHH---HHHHHh
Q 008918 103 LSK-IVDILVQLLAAEEIVERDAVHKALMSLL--RQD--VKASLTALFKHIGSVDEPSTDEFIREKV---LSFIRD 170 (549)
Q Consensus 103 ~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sll--k~d--~k~tL~~lf~qI~~~~e~~~eE~vREr~---l~Fl~~ 170 (549)
+| |--|+-- +.-|....+.++-.||.-+- ..| .--++..+++.+.. .-||++|+|+ ++|+..
T Consensus 486 -~~yvrhIyNR-~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcln----D~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 486 -GKYVRHIYNR-LILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLN----DQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred -chHHHHHHHH-HHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhh----cccHHHHHHHHHHHHhhhh
Confidence 23 3334432 33477777877777773321 112 23355666777763 3456788764 566655
No 165
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=36.07 E-value=5.5e+02 Score=30.63 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=42.4
Q ss_pred HHHhhhhccccchhHHHHHhhhccccc--ccCccchhh--HHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008918 70 VDAHLDLIEEEELGVRVQAIRGLPLFC--KDTPEYLSK--IVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 70 i~a~lDLcEDed~~IR~qAIk~Lp~lc--k~~~e~~~r--iaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (549)
|.-++++.+.++..+.+.++.-|-.|| ++|++.+.. +.--|+++|++++.. .++.+|.-|+.+
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~---l~~~aLrlL~NL 358 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED---LVNVALRLLFNL 358 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH---HHHHHHHHHHHh
Confidence 445566666677778887887777775 666666555 777889999887653 455555555444
No 166
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.61 E-value=4.8e+02 Score=26.39 Aligned_cols=122 Identities=19% Similarity=0.287 Sum_probs=62.0
Q ss_pred cccccccCccchhhHHHHHHHHHhhch----hHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 008918 92 LPLFCKDTPEYLSKIVDILVQLLAAEE----IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 92 Lp~lck~~~e~~~riaDVL~QLLqsdd----~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~F 167 (549)
+...| ++++-+..-.+.+-++++..+ ...-+.-...+...++........-++..... ..+...|.++|.=
T Consensus 136 ~~~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~a 210 (324)
T PF11838_consen 136 LSLAC-GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSA 210 (324)
T ss_dssp HHHHH-T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHH
T ss_pred HHHhc-cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHh
Confidence 44457 777767777777777777533 23444555566777777666667777776653 2233445555533
Q ss_pred HHhhcccchhhhcCChHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHh
Q 008918 168 IRDKVFPLKAELLKPQEEMERHITDLIKKSLED--VTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ 238 (549)
Q Consensus 168 l~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~d--VT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eq 238 (549)
|. ..++++.-. ..+..+|.+ |+..+...+|.-+.+ .+|.|| ..+.+++.+.
T Consensus 211 La----------~~~d~~~~~---~~l~~~l~~~~v~~~d~~~~~~~~~~------~~~~~~-~~~~~~~~~n 263 (324)
T PF11838_consen 211 LA----------CSPDPELLK---RLLDLLLSNDKVRSQDIRYVLAGLAS------SNPVGR-DLAWEFFKEN 263 (324)
T ss_dssp HT----------T-S-HHHHH---HHHHHHHCTSTS-TTTHHHHHHHHH-------CSTTCH-HHHHHHHHHC
T ss_pred hh----------ccCCHHHHH---HHHHHHcCCcccccHHHHHHHHHHhc------CChhhH-HHHHHHHHHH
Confidence 21 112333333 333444544 666676555543321 133345 5566777654
No 167
>KOG2479 consensus Translation initiation factor 3, subunit d (eIF-3d) [Translation, ribosomal structure and biogenesis]
Probab=35.13 E-value=30 Score=38.58 Aligned_cols=12 Identities=50% Similarity=0.614 Sum_probs=5.7
Q ss_pred CCCCCCcccCCC
Q 008918 529 RGGIRGRGRGWG 540 (549)
Q Consensus 529 ~~g~rgrgr~~g 540 (549)
|+++|+|||.+|
T Consensus 141 r~~~~~~g~rfg 152 (549)
T KOG2479|consen 141 RLYGRNRGRRFG 152 (549)
T ss_pred hhcccccccccc
Confidence 334455555444
No 168
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=34.75 E-value=2.5e+02 Score=26.45 Aligned_cols=71 Identities=31% Similarity=0.424 Sum_probs=46.1
Q ss_pred HHHHHHHHHhh--hhh-ccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh
Q 008918 254 DRLISCLYMAL--PFF-LRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL 326 (549)
Q Consensus 254 dRli~cl~~Al--p~f-s~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L 326 (549)
+||...+...+ |.. +....+.-|++.+..-+ .=..+|..+-.-++|-|+.+|-++.+..+-.++..|..+|
T Consensus 21 ~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l--~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll 94 (164)
T PF03914_consen 21 DRFYRALYSLLLDPELFSSSDKSALLLNLLDKSL--KSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLL 94 (164)
T ss_pred HHHHHHHHHHHcchhhccccchHHHHHHHHHHHH--cccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77777777777 332 22222334777777555 5555677777788888888877777666666666666555
No 169
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=34.51 E-value=49 Score=28.73 Aligned_cols=6 Identities=17% Similarity=0.728 Sum_probs=4.0
Q ss_pred cccccc
Q 008918 467 SVNLSW 472 (549)
Q Consensus 467 ~itlSW 472 (549)
+|..-|
T Consensus 30 PIV~~W 35 (81)
T PF15320_consen 30 PIVEPW 35 (81)
T ss_pred CEecCc
Confidence 666667
No 170
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=34.19 E-value=88 Score=26.50 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=30.0
Q ss_pred HHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHH
Q 008918 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV 125 (549)
Q Consensus 85 R~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v 125 (549)
.+..+.+|-.+|.+++...+.+.=||.+|.+.|=-.|-...
T Consensus 4 Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Dil~Eeail 44 (84)
T PF02020_consen 4 QVDLLNALEEFCAENPNLMPLFPKILQQLYDEDILEEEAIL 44 (84)
T ss_dssp HHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhhccHHHHH
Confidence 35677788888988888888888888888877655554443
No 171
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=9.2e+02 Score=30.51 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccC---------ccc--hHHHHHHh
Q 008918 5 SDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFF---------PDL--SSRAVDAH 73 (549)
Q Consensus 5 ~~~~~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~F---------P~L--~e~Ai~a~ 73 (549)
..+...|.+||....-..+..+...+.+.|+-+=....+ +..+-+..|+|.--|+.. |.. +=+.+..+
T Consensus 646 ~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L 724 (1176)
T KOG1248|consen 646 VQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRL 724 (1176)
T ss_pred cccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 455667888885444443333444678888765555554 566667777776555432 111 22456777
Q ss_pred hhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHH
Q 008918 74 LDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL 114 (549)
Q Consensus 74 lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLL 114 (549)
+|+|.-+..+.=.++|.++-.+-|+..++..+.|=-|.+.+
T Consensus 725 ~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i 765 (1176)
T KOG1248|consen 725 LKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFI 765 (1176)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHH
Confidence 77777444444455555555555777777777664444333
No 172
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=33.08 E-value=5.4e+02 Score=26.22 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=30.6
Q ss_pred hHHHHHHhhhhccccchhHHHHHh-hhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAI-RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAI-k~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL 129 (549)
+...+.++++.|.++....=...+ ..+..+|.+ .|-+++. -.++..-.+.++..+-..|
T Consensus 57 g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~--~~g~~vl---qkll~~~~~~~~~~i~~~l 116 (322)
T cd07920 57 GNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLD--MYGCRVI---QKLLESISEEQISLLVKEL 116 (322)
T ss_pred ccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHccc--chhHHHH---HHHHHhcCHHHHHHHHHHH
Confidence 455677777777655433222233 567777876 2334433 3333333355555554444
No 173
>PF06708 DUF1195: Protein of unknown function (DUF1195); InterPro: IPR010608 This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
Probab=33.06 E-value=25 Score=33.53 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=31.1
Q ss_pred hHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccc
Q 008918 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (549)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck 97 (549)
+||||+ +||+|-++-...++++||-+||-+|..++-
T Consensus 109 LPrFWq-------EAFeAAYe~L~sD~~~VrdaAisEIAkmS~ 144 (157)
T PF06708_consen 109 LPRFWQ-------EAFEAAYEELASDVPQVRDAAISEIAKMSV 144 (157)
T ss_pred CchHHH-------HHHHHHHHHHhccCcchhHHHHHHHHHHhh
Confidence 577775 899999998888889999999999988864
No 174
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.05 E-value=2.8e+02 Score=34.51 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred hhhHHHHHHHh-hhcCCCCC----------------------CC-----------CccchHHHHHHHHHHHHhhhcC
Q 008918 316 RQILPSVAVLL-KYMPLRKT----------------------GG-----------EEMNFTYVECLLYTFHHLAHKA 358 (549)
Q Consensus 316 ~~~l~~i~~~L-~ymP~~~~----------------------~~-----------~~l~fS~vEcLLyafh~L~~K~ 358 (549)
..+.+.+|+++ ++||...+ ++ ..-+|++.++.+++|-.|+.-.
T Consensus 919 ~~l~el~~E~~ckwm~sre~Il~f~~~v~~nag~~~~l~ll~~~s~h~~r~vI~e~l~~~~~a~af~l~feel~~nk 995 (1206)
T KOG2079|consen 919 KRLRELHIELNCKWMSSREMILWFNGTVLSNAGSLQILDLLNQDSNHEARAVIHERLESFNLAVAFLLSFEELCLNK 995 (1206)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhccchHHHHHHHhcChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 34788899999 99999752 12 2247899999999999998653
No 175
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=33.01 E-value=38 Score=37.68 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=46.8
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHH-----HHHHhhhhccccchhHHHHHhhhcccccccCc
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP 100 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~ 100 (549)
.++.+--.|+.=|..|.+|+|....- +=+.++.|..++|+.||.+|++.+-.+--.||
T Consensus 366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~w 428 (429)
T cd00256 366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHNW 428 (429)
T ss_pred CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 56888889999999999999976432 44568889999999999999998877655554
No 176
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=32.77 E-value=38 Score=31.70 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=6.3
Q ss_pred Ccccccccc
Q 008918 466 KSVNLSWKE 474 (549)
Q Consensus 466 ~~itlSW~~ 474 (549)
..+.++|..
T Consensus 104 r~l~V~~a~ 112 (144)
T PLN03134 104 RHIRVNPAN 112 (144)
T ss_pred EEEEEEeCC
Confidence 578888843
No 177
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=32.57 E-value=1e+03 Score=29.18 Aligned_cols=230 Identities=20% Similarity=0.229 Sum_probs=130.8
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHh-----hhhccccchh-------------------------
Q 008918 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAH-----LDLIEEEELG------------------------- 83 (549)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~-----lDLcEDed~~------------------------- 83 (549)
.+||-.-+ .++++.+=||-.|++-.+-.-...|+.+-+. +.-...+++.
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 34555445 8899999999999887765555544443322 2223333333
Q ss_pred -----------------HHHHHhhhcccccccCccchh-----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-chHHH
Q 008918 84 -----------------VRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKAS 140 (549)
Q Consensus 84 -----------------IR~qAIk~Lp~lck~~~e~~~-----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-d~k~t 140 (549)
|....|.=+-.||+..|||++ ||+==|.-+|.+-...=+-++.|++==+-+. -|..+
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdV 961 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDV 961 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHH
Confidence 334444444556777788865 5777788888887777777777777666665 77778
Q ss_pred HHHHHHhhhcCCCCCChHHHH--------------------------------------HHHHHHHHhhcccchhhhcCC
Q 008918 141 LTALFKHIGSVDEPSTDEFIR--------------------------------------EKVLSFIRDKVFPLKAELLKP 182 (549)
Q Consensus 141 L~~lf~qI~~~~e~~~eE~vR--------------------------------------Er~l~Fl~~kl~~l~~e~~~~ 182 (549)
|..|++.+. ..|-+.| -|.|+|+-+.+..+..+++
T Consensus 962 LatLlnnLk-----vqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi-- 1034 (1172)
T KOG0213|consen 962 LATLLNNLK-----VQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI-- 1034 (1172)
T ss_pred HHHHHhcch-----HHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH--
Confidence 888887775 2222222 1333444444433333332
Q ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhH-HHHHHHHHHHhhhccccCCCCChHHHHHHHHHHH
Q 008918 183 QEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTER-MKELIGIIEGQADLDAQFNVSDADHIDRLISCLY 261 (549)
Q Consensus 183 ~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr-~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~ 261 (549)
-.|+-++.-.|-|-...--..-|++.+.+.+.-...+.+- +.-|+.++-- .-|+++ |..|.++..|
T Consensus 1035 -----yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWp-----NIle~s-Phviqa~~e~-- 1101 (1172)
T KOG0213|consen 1035 -----YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWP-----NILETS-PHVIQAFDEA-- 1101 (1172)
T ss_pred -----HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhh-----hhcCCC-hHHHHHHHHH--
Confidence 2345566666665555555566777777766532222210 1112222211 223333 4445555554
Q ss_pred HhhhhhccCCChhhHHHHHHhhhcc
Q 008918 262 MALPFFLRGASGSKFLNYLNKHIIP 286 (549)
Q Consensus 262 ~Alp~fs~~v~st~f~~y~~~~vlP 286 (549)
+--|.-.-++..+++|...-+|.
T Consensus 1102 --~eg~r~~Lg~~~~~~Y~~QGLFH 1124 (1172)
T KOG0213|consen 1102 --MEGLRVALGPQAMLKYCLQGLFH 1124 (1172)
T ss_pred --HHHHHHHhchHHHHHHHHHhccC
Confidence 44455555678999999988776
No 178
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=31.91 E-value=61 Score=29.65 Aligned_cols=67 Identities=16% Similarity=0.325 Sum_probs=46.3
Q ss_pred HHhhhhHHhhccCcc--chHHHHHHhhhhccccchhHHHHHhhhccc-ccccCccchhhHHHHHHHHHhh
Q 008918 50 LAAQLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLPL-FCKDTPEYLSKIVDILVQLLAA 116 (549)
Q Consensus 50 LaaQfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~-lck~~~e~~~riaDVL~QLLqs 116 (549)
-.|..+.+|+++.|+ +..+..+.+++.+.+.+...|+.+++.+-. +.+.+-.-+..+...|..+...
T Consensus 54 ~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~ 123 (169)
T cd00159 54 DVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQN 123 (169)
T ss_pred HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh
Confidence 567899999999998 367888999999988888888887766543 3333333344455555544443
No 179
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=1.3e+02 Score=29.95 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCC
Q 008918 229 KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLP 292 (549)
Q Consensus 229 qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~ 292 (549)
.+++.++..-.++-..- +-|++.|.++|.+++.-..-+.++..-.-+|+||.....| +...|
T Consensus 21 lraL~iLr~~~~~~~~g-~i~y~~v~~iidFi~nfaDkcHH~KEE~~LF~~m~~~g~~-~~~~~ 82 (189)
T COG3945 21 LRALSILRKALDLIKNG-PIDYSDVKEIIDFIRNFADKCHHGKEEKLLFNYMEHEGGP-FEEGP 82 (189)
T ss_pred HHHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-cccCc
Confidence 55677777665555544 7788999999999999999999988889999999999999 55543
No 180
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=30.27 E-value=2.6e+02 Score=28.88 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=30.2
Q ss_pred chhHHHHHhhhcccccccC--ccchhh-HHHHHHHHHhhchhHHHHHHHHHHHH
Q 008918 81 ELGVRVQAIRGLPLFCKDT--PEYLSK-IVDILVQLLAAEEIVERDAVHKALMS 131 (549)
Q Consensus 81 d~~IR~qAIk~Lp~lck~~--~e~~~r-iaDVL~QLLqsdd~~E~~~v~~aL~s 131 (549)
|..+..+|+|.|-.++..+ -..+.+ +.| |.+||.+.+..-...|-+.|+.
T Consensus 108 ns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~-ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 108 NSEVQLAGLRLLTNLTVTNDYHHMLANYIPD-LLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred CCHHHHHHHHHHHccCCCcchhhhHHhhHHH-HHHHHHcCChHHHHHHHHHHHH
Confidence 5567778888888887443 112444 555 4688888766555555555443
No 181
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=29.99 E-value=36 Score=34.14 Aligned_cols=7 Identities=29% Similarity=0.187 Sum_probs=3.6
Q ss_pred hhhhhcC
Q 008918 452 SKPLHSK 458 (549)
Q Consensus 452 i~~L~~~ 458 (549)
|.+||++
T Consensus 23 ieDlFyK 29 (241)
T KOG0105|consen 23 IEDLFYK 29 (241)
T ss_pred HHHHHhh
Confidence 4555554
No 182
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=29.65 E-value=8.6e+02 Score=28.36 Aligned_cols=281 Identities=16% Similarity=0.131 Sum_probs=147.9
Q ss_pred HHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccc---hHHHHHHhhhhccccchhHHHH
Q 008918 11 IEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL---SSRAVDAHLDLIEEEELGVRVQ 87 (549)
Q Consensus 11 ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L---~e~Ai~a~lDLcEDed~~IR~q 87 (549)
+-+.|.-+--+.+.++..++.++-.++|. .++..+-+=||-=|..|++.++-. ...-|+.+-....|.....|..
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re 193 (569)
T KOG1242|consen 116 VSTCLPPLVVLSKGLSGEYVLELLLELLT--STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE 193 (569)
T ss_pred HHHHhhhHHHHhhccCHHHHHHHHHHHhc--cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH
Confidence 55666666555555555567777777777 566666667888899999988877 5567888888888888887664
Q ss_pred -Hhhhcccccc-cCccchhhHHHHHHHHHhh---chhHHHHHHHHHHHHHHhhchHHH----HHHHHHhhhcCCCCCChH
Q 008918 88 -AIRGLPLFCK-DTPEYLSKIVDILVQLLAA---EEIVERDAVHKALMSLLRQDVKAS----LTALFKHIGSVDEPSTDE 158 (549)
Q Consensus 88 -AIk~Lp~lck-~~~e~~~riaDVL~QLLqs---dd~~E~~~v~~aL~sllk~d~k~t----L~~lf~qI~~~~e~~~eE 158 (549)
|.-+.-.+|. -.+-.-+=++.+|--+|.. -.+..+.++..+...+++.=+... |..++..|. +.
T Consensus 194 ~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~-------~~ 266 (569)
T KOG1242|consen 194 AALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL-------EA 266 (569)
T ss_pred HHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH-------HH
Confidence 3333333331 1122334577777666654 455777777777777776644333 333333332 11
Q ss_pred HHHHH--HHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHH
Q 008918 159 FIREK--VLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIE 236 (549)
Q Consensus 159 ~vREr--~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~ 236 (549)
..|++ .+..+..-....|. .+ +...--|+-.+.++|-|.-.+--......|..+..+-. .|. .+.
T Consensus 267 kWrtK~aslellg~m~~~ap~-qL---s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~d--I~~------ 333 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPK-QL---SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPD--IQK------ 333 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchH-HH---HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHH--HHH------
Confidence 23433 23332211111111 11 12334455555566665544333333322222222110 000 011
Q ss_pred HhhhccccCCCCChHHHHHHHHHHHHhh---hhhccCCChhhHHHHHHhhhcccCCCC-C------hhhhhhHHHHHHHh
Q 008918 237 GQADLDAQFNVSDADHIDRLISCLYMAL---PFFLRGASGSKFLNYLNKHIIPVFDKL-P------EERKLDLLKALAEI 306 (549)
Q Consensus 237 eqa~Ld~~f~~sD~e~idRli~cl~~Al---p~fs~~v~st~f~~y~~~~vlP~l~~l-~------e~~kl~lLK~lAE~ 306 (549)
.+.+++.|+...- |-+...-..|.||+|+-. |.|+-| | .++-..+-|..|.+
T Consensus 334 ---------------~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~---psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 334 ---------------IIPTLLDALADPSCYTPECLDSLGATTFVAEVDA---PSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred ---------------HHHHHHHHhcCcccchHHHHHhhcceeeeeeecc---hhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 2344444444432 223344455888888765 444443 1 13334444655555
Q ss_pred ----CCCC-ChhhhhhhHHHHHHHh-hhcCC
Q 008918 307 ----SPYT-TPQDSRQILPSVAVLL-KYMPL 331 (549)
Q Consensus 307 ----s~~~-~~~da~~~l~~i~~~L-~ymP~ 331 (549)
+... ++.+....+|.|+.-| ..+-+
T Consensus 396 idNm~~LveDp~~lapfl~~Llp~lk~~~~d 426 (569)
T KOG1242|consen 396 IDNMCKLVEDPKDLAPFLPSLLPGLKENLDD 426 (569)
T ss_pred HHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC
Confidence 4444 5666666777777777 54433
No 183
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=28.77 E-value=1.2e+02 Score=28.88 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=42.3
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc-hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHH
Q 008918 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (549)
Q Consensus 32 ~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L-~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDV 109 (549)
...-.+|..+. .+..+..-+-+++... +.+ -.+|+.=+-.-. .|+.||.-||+-|-.+..+ .+.+.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W----~~~~~~~aL~LL~~~~--~~~~vr~yAv~~L~~~~~~------~l~~y 106 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWW----APLSPEDALELLSPKY--PDPVVRQYAVRVLESASDD------ELLLY 106 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcC----CCCCHHHHHHHcCCcC--CCHHHHHHHHHHHHhCCHH------HHHHH
Confidence 44555555555 4444444445555443 222 334443333323 3489999999999886653 57788
Q ss_pred HHHHHhh
Q 008918 110 LVQLLAA 116 (549)
Q Consensus 110 L~QLLqs 116 (549)
|-||.|+
T Consensus 107 lpQLVQa 113 (152)
T cd00864 107 LPQLVQA 113 (152)
T ss_pred HHHHHHH
Confidence 8777765
No 184
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=28.48 E-value=96 Score=31.44 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred hccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCC
Q 008918 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPS 155 (549)
Q Consensus 76 LcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~ 155 (549)
|++|+|+.|-+.||.....+-+--=+|+ ....-..-.+..++-+|. .+++.+. .
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i--------------~~~~~~~~~W~~~~~lK~-------~Il~~~~-----~ 54 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWI--------------CVNPSDEQLWESMNELKD-------RILSLWD-----S 54 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHH--------------S--HHHHHHHHHHHHHHH-------HHHHGGG-----S
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHH--------------cCCchHHHHHHHHHHHHH-------HHHHHhc-----C
Q ss_pred ChHHHHHHHHHHH
Q 008918 156 TDEFIREKVLSFI 168 (549)
Q Consensus 156 ~eE~vREr~l~Fl 168 (549)
+.+.+|-.++||+
T Consensus 55 ~~~gvk~~~iKFl 67 (239)
T PF11935_consen 55 ENPGVKLAAIKFL 67 (239)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH
No 185
>PF12235 FXR1P_C: Fragile X-related 1 protein C terminal; InterPro: IPR022034 Fragile X mental retardation 1 protein (FMR1P) , fragile X-related 1 protein (FXR1P) and fragile X-related 2 protein (FXR2P) are members of a small family of RNA-binding proteins that are thought to transport mRNA and to control their translation []. The proteins contain two KH domains and a RGG box that are characteristic motifs in RNA-binding proteins as well as nuclear localization and export signals. ; GO: 0003723 RNA binding; PDB: 2LA5_B.
Probab=28.33 E-value=25 Score=34.00 Aligned_cols=12 Identities=83% Similarity=1.589 Sum_probs=2.2
Q ss_pred CcccCCCCCCCC
Q 008918 534 GRGRGWGARGRG 545 (549)
Q Consensus 534 grgr~~g~rgr~ 545 (549)
|||||.++||||
T Consensus 112 grgRg~~~rgR~ 123 (155)
T PF12235_consen 112 GRGRGRGGRGRG 123 (155)
T ss_dssp SSSTT-------
T ss_pred CCCCCCCCCCCC
Confidence 444444666663
No 186
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=27.85 E-value=86 Score=21.11 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.3
Q ss_pred HHHHHhhhcccccccCccchhhHHHHHHHHHh
Q 008918 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA 115 (549)
Q Consensus 84 IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLq 115 (549)
||..|++.|-.+.. ++-.+.|.+.|+
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhc
Confidence 78899999999886 477788887775
No 187
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=27.75 E-value=7.5e+02 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhhh
Q 008918 120 VERDAVHKALMSLLRQDVKASLTALFKHIG 149 (549)
Q Consensus 120 ~E~~~v~~aL~sllk~d~k~tL~~lf~qI~ 149 (549)
.=....+|++.+|+.+|+..+-.--|.-|.
T Consensus 28 ~~i~fm~n~~~EL~~ld~~~sY~~aF~yIR 57 (299)
T PF03715_consen 28 PHINFMKNCLVELYGLDPDVSYQHAFVYIR 57 (299)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667899999999999998888887764
No 188
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.75 E-value=5.8e+02 Score=25.98 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=35.7
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhcc
Q 008918 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE 78 (549)
Q Consensus 30 ~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcE 78 (549)
+.+-|+-+|.......=..+.|++.|.+..-.+|.+....+-++.+.|=
T Consensus 5 r~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v 53 (223)
T PF14675_consen 5 RFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCV 53 (223)
T ss_dssp HHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566888999888444444689999999999999998887777777764
No 189
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.46 E-value=1.1e+03 Score=27.78 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhh--ccccCCCCChHHHHHHHHHH
Q 008918 183 QEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD--LDAQFNVSDADHIDRLISCL 260 (549)
Q Consensus 183 ~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~--Ld~~f~~sD~e~idRli~cl 260 (549)
+.++.+.+..++++-...| | .+|--++.+-|+| .+++=++...+. =+.-|+++|.+.+..++...
T Consensus 564 s~~l~e~lyk~~~~dpr~v---E-~lfkyv~dnqpi~---------~eafIWlfkk~~~~Edglfd~ddke~vR~~l~Sa 630 (711)
T COG1747 564 SLELREALYKEGEKDPRVV---E-ALFKYVADNQPIY---------PEAFIWLFKKAYSIEDGLFDSDDKETVRMSLGSA 630 (711)
T ss_pred cHHHHHHHHHHhhcCHHHH---H-HHHHHHHhcCcch---------HHHHHHHHHHhccccccccChhhHHHHHHHHHHH
Confidence 3455555555554432222 1 2344445555555 334444443322 23568888888888777766
Q ss_pred HHhhhhhccCCCh---hhHHHHHHhhhcccCCCC-ChhhhhhHHHHHHHhCCCCCh
Q 008918 261 YMALPFFLRGASG---SKFLNYLNKHIIPVFDKL-PEERKLDLLKALAEISPYTTP 312 (549)
Q Consensus 261 ~~Alp~fs~~v~s---t~f~~y~~~~vlP~l~~l-~e~~kl~lLK~lAE~s~~~~~ 312 (549)
--++|--+...+. .++.+|+..+-+-.-..+ .++ .+++|-|--+|.+|..
T Consensus 631 l~~m~qnas~ssk~lgk~l~~lLVgq~yl~~~~~i~~~--~e~akef~ll~~kcpq 684 (711)
T COG1747 631 LCAMPQNASTSSKRLGKKLWTLLVGQRYLGVRQLITEA--EETAKEFGLLSEKCPQ 684 (711)
T ss_pred HHhhhcccCcchHHHHHHHHHHHhcccceeeehhhhhh--HHHHHHHHHHHHhcCC
Confidence 6666666555554 566666665443322222 333 7899999999988854
No 190
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=27.02 E-value=65 Score=35.19 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q 008918 540 GARGRGRGYR 549 (549)
Q Consensus 540 g~rgr~~~~~ 549 (549)
|++|+|||+|
T Consensus 161 ~r~G~Grg~~ 170 (365)
T KOG2945|consen 161 GRQGGGRGNW 170 (365)
T ss_pred CCCCccCCCC
Confidence 3467777776
No 191
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=26.89 E-value=49 Score=32.84 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=33.0
Q ss_pred hhccccc---ccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 008918 90 RGLPLFC---KDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (549)
Q Consensus 90 k~Lp~lc---k~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sl 132 (549)
.-||.|| .|-++..+.+|.+|+++|.++ +.=+..|-+||..|
T Consensus 153 slLP~FC~~P~D~~~~F~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 153 SLLPGFCNYPTDLAESFPSFAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHhHHhcCCcccHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 5689999 455566777999999999875 77778888888766
No 192
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=26.73 E-value=8.5e+02 Score=26.44 Aligned_cols=152 Identities=20% Similarity=0.314 Sum_probs=86.8
Q ss_pred HHHHHHHhhhhhhccccc-cChhhHHH-HHHHhcCCHHHHHHHhhhhH-----HhhccCccchHHHHHHhhhhccccchh
Q 008918 11 IEKLYEFGERLNEAKDKS-QNVKDYEG-IIEAAKTSLKAKQLAAQLIP-----RFFKFFPDLSSRAVDAHLDLIEEEELG 83 (549)
Q Consensus 11 ie~LY~~~~~L~~akd~~-~~~~~Y~~-Il~~~kg~~k~K~LaaQfI~-----kffk~FP~L~e~Ai~a~lDLcEDed~~ 83 (549)
.+.+-+.|.-+...+... ....+|.. ++..+=|..+++.+-...-. +.|..-|.+-.+. +.|+..+|-||
T Consensus 59 ~~~il~eF~~~~~~~~~i~~~~~~~~~~lL~kalg~~~a~~i~~~i~~~~~~~~~~~~l~~~~p~~---l~~~i~~EhPQ 135 (339)
T COG1536 59 KEQVLEEFEELFTEQAGINKGADEYARELLEKALGEEKAESLLERITGSAIQTSPFDLLRKLDPSQ---LADLIKNEHPQ 135 (339)
T ss_pred HHHHHHHHHHHHHhccccccChHHHHHHHHHHhCcHhHHHHHHHHhhhccccccHHHHhhhCCHHH---HHHHHHccccH
Confidence 333333444444444443 44445544 44555587777665444333 2555555554332 66777777776
Q ss_pred ------------------------HHHHHhhhcccccccCccchhhHHHHHHHHHhhc---hhHHHHHHHHHHHHHHhhc
Q 008918 84 ------------------------VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE---EIVERDAVHKALMSLLRQD 136 (549)
Q Consensus 84 ------------------------IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsd---d~~E~~~v~~aL~sllk~d 136 (549)
.|..-++.|..+-.-+|+.+..+..+|-.-|++. +-....-+ ++...++..=
T Consensus 136 tia~iLs~L~~~~aa~vL~~l~~e~r~~v~~Ria~l~~v~p~al~~i~~~l~~~l~~~~~~~~~~~gg~-~~~aeIlN~~ 214 (339)
T COG1536 136 TIALILSYLPPDQAAEILSTLPEELRADVVKRIATLEGVSPEALAELENVLEKKLQSLVNEDYSKLGGI-KAAAEILNLL 214 (339)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccH-hHHHHHHHhc
Confidence 4555666666666667777777888885555554 22333322 3446777777
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 008918 137 VKASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 137 ~k~tL~~lf~qI~~~~e~~~eE~vREr~l~F 167 (549)
.+++...++..+.. +.|.-.+.+|+++.-|
T Consensus 215 d~~~e~~il~~l~~-~~~~la~~I~~kmF~F 244 (339)
T COG1536 215 DRGTEKTILESLEE-EDPELAEEIKEKMFVF 244 (339)
T ss_pred chhHHHHHHHHHhh-cCHHHHHHHHHHHhhH
Confidence 77888888888863 2222233467777666
No 193
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=26.45 E-value=9.1e+02 Score=26.71 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.3
Q ss_pred cccHHHHHHHHHHHhhccccCC
Q 008918 200 DVTGAEFRMFMDFLKSLSLFGE 221 (549)
Q Consensus 200 dVT~~EF~l~m~iL~~l~~~~t 221 (549)
.+...||-.++.=|+.|+.+++
T Consensus 237 s~~~~EFG~l~~~l~~LR~L~S 258 (372)
T PRK15338 237 SCSRLEFGQLLRRLTQLKMLRS 258 (372)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 5677899999988888888864
No 194
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.28 E-value=9.6e+02 Score=29.19 Aligned_cols=214 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcC
Q 008918 72 AHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV 151 (549)
Q Consensus 72 a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~ 151 (549)
.++-|.++..+.+.+-|+..|..+...-|-.|+.=....-+|+-.++..|++.+ .=.++.+|-++.
T Consensus 8 ~lialL~e~~~~lk~~Al~~in~vVd~~WpEIsd~l~~IE~lyed~~F~er~~A------------aL~~SKVyy~Lg-- 73 (929)
T KOG2062|consen 8 GLIALLREPEPSLKVHALFKINNVVDQFWPEISDSLPKIESLYEDETFPERQLA------------ALLASKVYYYLG-- 73 (929)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHhccCCCchhHHH------------HHHHHHHHHHHH--
Q ss_pred CCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHH
Q 008918 152 DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKEL 231 (549)
Q Consensus 152 ~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeL 231 (549)
-=|..|.| .|...-.---.+.-+++...+-|. -+.+..--.-.-..+- +......|+..+
T Consensus 74 --------eye~Al~y------AL~ag~~F~Vd~~S~y~etivak~-----id~yi~~~~~~~~~~~-~~~~iD~rL~~i 133 (929)
T KOG2062|consen 74 --------EYEDALEY------ALRAGDDFDVDENSDYVETIVAKC-----IDMYIETASETYKNPE-QKSPIDQRLRDI 133 (929)
T ss_pred --------HHHHHHHH------HHcCCccccccCccchhhHHHHHH-----HHHHHHHHHHHhcCcc-ccCCCCHHHHHH
Q ss_pred HHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCC
Q 008918 232 IGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT 311 (549)
Q Consensus 232 v~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~ 311 (549)
|+-+.....=+..+ ..+|- -.-.++=+..+-+-+++ .+.....+..+|.++--+..
T Consensus 134 v~rmi~kcl~d~e~--------~~aiG-----------ia~E~~rld~ie~Ail~--~d~~~~~~~yll~l~~s~v~--- 189 (929)
T KOG2062|consen 134 VERMIQKCLDDNEY--------KQAIG-----------IAFETRRLDIIEEAILK--SDSVIGNLTYLLELLISLVN--- 189 (929)
T ss_pred HHHHHHHhhhhhHH--------HHHHh-----------HHhhhhhHHHHHHHhcc--ccccchHHHHHHHHHHHHHh---
Q ss_pred hhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHH
Q 008918 312 PQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLY 349 (549)
Q Consensus 312 ~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLy 349 (549)
+.+=....|+-++ .|||.|.. ..|+.++|+.|
T Consensus 190 --~~efR~~vlr~lv~~y~~~~~P----Dy~~vc~c~v~ 222 (929)
T KOG2062|consen 190 --NREFRNKVLRLLVKTYLKLPSP----DYFSVCQCYVF 222 (929)
T ss_pred --hHHHHHHHHHHHHHHHccCCCC----CeeeeeeeeEE
No 195
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=25.69 E-value=8.4e+02 Score=28.11 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=31.1
Q ss_pred cCccc-hHHHHHHhhhhccccchhHHHHHhhhcccccccCccc
Q 008918 61 FFPDL-SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY 102 (549)
Q Consensus 61 ~FP~L-~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~ 102 (549)
+|+.+ .++....+..+|..+...+--.|++.|...|.++...
T Consensus 172 ~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~ 214 (535)
T PRK08451 172 RFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRD 214 (535)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH
Confidence 45555 4556666778888887777778999999999877643
No 196
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=25.18 E-value=1.3e+03 Score=28.07 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHH
Q 008918 202 TGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN 281 (549)
Q Consensus 202 T~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~ 281 (549)
+..-...+++|+-.|.... .+.++.||+.|....+++. |+..+.+.-...+.|+-...--+.++....++-.++.
T Consensus 242 ~~~i~~~l~RiLP~Lt~G~----~e~m~~Lv~~F~p~l~f~~-~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il 316 (802)
T PF13764_consen 242 NPQILQALARILPFLTYGN----EEKMDALVEHFKPYLDFDK-FDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKIL 316 (802)
T ss_pred CHHHHHHHHHHhhHHhcCC----HHHHHHHHHHHHHhcChhh-cccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 4555666777777776653 2457889999987766664 4433332224456666555555555555555555554
Q ss_pred h
Q 008918 282 K 282 (549)
Q Consensus 282 ~ 282 (549)
+
T Consensus 317 ~ 317 (802)
T PF13764_consen 317 E 317 (802)
T ss_pred H
Confidence 4
No 197
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=25.04 E-value=6.4e+02 Score=30.00 Aligned_cols=72 Identities=25% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhh-hhhhHHHHHHHhhhcCCCCCCCCccchHHHHHHHHHHHHh
Q 008918 276 FLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD-SRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHL 354 (549)
Q Consensus 276 f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~d-a~~~l~~i~~~L~ymP~~~~~~~~l~fS~vEcLLyafh~L 354 (549)
|..++...|++.|..-+...|+.||.-+=....+-+.+. -.+++|.+..- |-+ -+=+.+|=.|-++-.|
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G---~~D-------Tn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALG---FLD-------TNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhh---ccc-------CCHHHHHHHHHHHHHH
Confidence 444455555555665566788888888888888777665 45555555333 322 2235666666666666
Q ss_pred hhc
Q 008918 355 AHK 357 (549)
Q Consensus 355 ~~K 357 (549)
+-|
T Consensus 397 a~k 399 (690)
T KOG1243|consen 397 APK 399 (690)
T ss_pred Hhh
Confidence 655
No 198
>PF08678 Rsbr_N: Rsbr N terminal; InterPro: IPR014792 Rsbr is a regulator of the RNA polymerase sigma factor subunit sigma(B). The structure of the N-terminal domain belongs to the globin fold superfamily []. ; PDB: 2BNL_A.
Probab=24.95 E-value=1.7e+02 Score=27.61 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=30.1
Q ss_pred CChhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Q 008918 381 EDFSDCYKDFTER-------LTTVEDLTRATMKKLTQGLAD 414 (549)
Q Consensus 381 eD~~~~~kdF~~R-------Lqyla~~~q~yikkL~~~l~~ 414 (549)
+.+.+++.||..| |.||.+|.|.+=+-+-+.|.+
T Consensus 54 ~~~~e~L~eFaer~VqlGwpL~flT~GL~~F~kvvy~~m~~ 94 (129)
T PF08678_consen 54 EEFEERLDEFAERVVQLGWPLKFLTKGLQEFRKVVYETMNE 94 (129)
T ss_dssp STTHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999 789999999999888888875
No 199
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=24.88 E-value=1.2e+03 Score=27.66 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=53.5
Q ss_pred cccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-----hhcCCCCCCCCccchHHHHHHHHHHHHhhhcCc
Q 008918 285 IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-----KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAP 359 (549)
Q Consensus 285 lP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-----~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P 359 (549)
+|.|+..++..--++|.++|-|-|.=. +-++||.=.+.+ .++| +-+|=|.--++.|..|+-
T Consensus 187 lPtF~~~Desl~~~ll~L~arm~PLra---SLdfLP~Ri~~F~~ra~~~fp-----------~a~e~L~~r~~~L~~k~~ 252 (683)
T PF08580_consen 187 LPTFSPQDESLYSSLLALFARMQPLRA---SLDFLPMRIEEFQSRAESIFP-----------SACEELEDRYERLEKKWK 252 (683)
T ss_pred CCCCCcHHHHHHHHHHHHHhccchHHH---HHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHH
Confidence 388877765556688999988866422 223444322222 2332 234444455555555444
Q ss_pred hhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008918 360 NATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLA 413 (549)
Q Consensus 360 ~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikkL~~~l~ 413 (549)
-.-.+.-..|-- ++ | +-|..=.+|+.+-++..+..|...+.
T Consensus 253 ~L~~e~~~LK~E-------Li-e-----dRW~~vFr~l~~q~~~m~esver~~~ 293 (683)
T PF08580_consen 253 KLEKEAESLKKE-------LI-E-----DRWNIVFRNLGRQAQKMCESVERSLS 293 (683)
T ss_pred HHHHHHHHHHHH-------hh-h-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221111110 12 1 24666677888888777777766664
No 200
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=24.53 E-value=2.5e+02 Score=27.02 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHH-HHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhh
Q 008918 137 VKASLTALFKHIGSVDEPSTDEFI-REKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS 215 (549)
Q Consensus 137 ~k~tL~~lf~qI~~~~e~~~eE~v-REr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~ 215 (549)
..+.++|++..|. ..+ ++++.+...+|+.+ ++ ..+...+.+++.||..+++-+..
T Consensus 99 ~~~g~~g~~~di~--------~~lP~~~l~aL~~~K~~~--------s~--------~F~~f~~~l~S~ef~~~~~~~~~ 154 (179)
T PF06757_consen 99 RGGGLNGFVDDIL--------ALLPRDKLRALYEEKLAT--------SP--------EFAEFVEALRSPEFQQLYNALWA 154 (179)
T ss_pred cCCCHHHHHHHHH--------HHCCHHHHHHHHHHHHHC--------CH--------HHHHHHHHHcCHHHHHHHHHHHc
Confidence 5567888888776 222 67777776667655 11 22333444677788777766654
Q ss_pred cccc
Q 008918 216 LSLF 219 (549)
Q Consensus 216 l~~~ 219 (549)
.+-+
T Consensus 155 ~~~~ 158 (179)
T PF06757_consen 155 SPEF 158 (179)
T ss_pred CHHH
Confidence 4444
No 201
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.30 E-value=49 Score=37.73 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=8.3
Q ss_pred CCChhhhhhHHHHHHH
Q 008918 290 KLPEERKLDLLKALAE 305 (549)
Q Consensus 290 ~l~e~~kl~lLK~lAE 305 (549)
+++...+.+++..|..
T Consensus 290 ~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 290 DVPQKKRESLLNRFQK 305 (572)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 3444555555555543
No 202
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=24.25 E-value=7.7e+02 Score=25.11 Aligned_cols=33 Identities=6% Similarity=0.038 Sum_probs=15.5
Q ss_pred hHHHHHHhhhhccccch-hHHHHHhhhccccccc
Q 008918 66 SSRAVDAHLDLIEEEEL-GVRVQAIRGLPLFCKD 98 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~-~IR~qAIk~Lp~lck~ 98 (549)
..-.+..+++.+..++. .|-..-...+..+|.+
T Consensus 129 gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~ 162 (322)
T cd07920 129 GNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTH 162 (322)
T ss_pred ccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 33455556666533322 2233334455566654
No 203
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.55 E-value=1.6e+02 Score=26.26 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcc-cccHHHHH-HHHHHHh
Q 008918 162 EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLE-DVTGAEFR-MFMDFLK 214 (549)
Q Consensus 162 Er~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~-dVT~~EF~-l~m~iL~ 214 (549)
.||-+|+.. |..+..+.-+ .|+.+.|-++|..++. .+++|||. .+-+.++
T Consensus 3 ~K~k~FL~t-Li~ls~~~~q--pe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~ln 54 (92)
T smart00549 3 SKCKRFLTT-LIQLSNDISQ--PEVAERVRTLVLGLVNGTITAEEFTSRLQEALN 54 (92)
T ss_pred HHHHHHHHH-HHHHhcCCCc--chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 356667664 2233444443 5899999999988774 89999995 3444443
No 204
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.14 E-value=1.8e+02 Score=33.49 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 008918 342 TYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAA 421 (549)
Q Consensus 342 S~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikkL~~~l~~~~K~~~~ 421 (549)
.-+|+++|++|+|+.|-...+.++ +| +.++.+-.....=+.++.......+.+|--+|..
T Consensus 29 ~~~~~~~FaaqTlr~Ki~~~F~~L--------p~-----~~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~------- 88 (559)
T KOG2081|consen 29 CDVEALLFAAQTLRNKIQYDFSEL--------PP-----LTHASLRDSLITHLKELHDHPDVIRTQLAVAVAA------- 88 (559)
T ss_pred chHHHHHHHHHHHHHHHHhhHHhc--------Cc-----chhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH-------
Confidence 457999999999999999888775 22 1222222223345666666666666666666643
Q ss_pred cCChHHHHHHHhhhccchhhhhhh--cc-HHHHhhhhhcCCCC
Q 008918 422 AKTDEAKEKIKTQKQNTTTGLRTC--NN-ILAMSKPLHSKTPS 461 (549)
Q Consensus 422 ~k~denk~k~~~~~q~~~~aL~~~--~N-I~~li~~L~~~pPs 461 (549)
-|++.. +| |..+++.+.++||+
T Consensus 89 ------------------Lal~~~~W~n~I~e~v~~~~~~~~~ 113 (559)
T KOG2081|consen 89 ------------------LALHMPEWVNPIFELVRALSNKHPA 113 (559)
T ss_pred ------------------HHHHhHhhcchHHHHHHHhhcCCcc
Confidence 245555 58 99999999999988
No 205
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=23.07 E-value=1.9e+02 Score=23.03 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=29.7
Q ss_pred HHHHhhhhc-c-ccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008918 69 AVDAHLDLI-E-EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLL 133 (549)
Q Consensus 69 Ai~a~lDLc-E-Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sll 133 (549)
.+..+++++ + ..++.||..|.--|-...+.+|.-.. ...-..=++.+...|++.|.+++
T Consensus 15 ~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~------~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 15 FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSK------QKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHH------HHHHHGSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhh------ccCCCCCCHHHHHHHHHHHHHHH
Confidence 344555555 2 22566677776666666665553111 22222233455556666655544
No 206
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=22.90 E-value=9.3e+02 Score=29.19 Aligned_cols=176 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHhcccccHHHHHHHHHHHhhccccCCCCch-hHHHHHHHHHHHh-hhccccCCCCChHHHHHHHHHHHHhhhhhc
Q 008918 191 TDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT-ERMKELIGIIEGQ-ADLDAQFNVSDADHIDRLISCLYMALPFFL 268 (549)
Q Consensus 191 ~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~-gr~qeLv~~i~eq-a~Ld~~f~~sD~e~idRli~cl~~Alp~fs 268 (549)
.+++..+|.+++..+...+++=+..+....=...- .+++.|..++... ..|-..-.+.+...|+.|+.++......+.
T Consensus 428 ~eel~~lL~~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~p 507 (840)
T PF04147_consen 428 HEELLELLDGYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKYP 507 (840)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCh--hhHHHHHHhhhcc-cCCC----CChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCc--
Q 008918 269 RGASG--SKFLNYLNKHIIP-VFDK----LPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEE-- 338 (549)
Q Consensus 269 ~~v~s--t~f~~y~~~~vlP-~l~~----l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~-- 338 (549)
..+.. ...+.-+-..+.+ .+.. .|.-.=|-+|++++-+ |.+..---.++-+.+-++ .|+-.-+.....
T Consensus 508 ~~~a~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~l--FPTSD~~HpVVTPalllm~~~L~q~~v~s~~di 585 (840)
T PF04147_consen 508 EEAAECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTL--FPTSDFRHPVVTPALLLMSEYLSQCRVRSLRDI 585 (840)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHh--cCcccccCcchhHHHHHHHHHHhcCCCCCHHHH
Q ss_pred cchHHHHHHHHHHHHhhhc-Cchhhhhcccc
Q 008918 339 MNFTYVECLLYTFHHLAHK-APNATNSLCGY 368 (549)
Q Consensus 339 l~fS~vEcLLyafh~L~~K-~P~~l~~lcg~ 368 (549)
..=.++=||++-+..+++. .|++++.|+|.
T Consensus 586 ~~GlfL~~l~l~y~~~SKR~vPEvinFL~~~ 616 (840)
T PF04147_consen 586 ASGLFLCTLLLEYQSLSKRFVPEVINFLLGL 616 (840)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHH
No 207
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.85 E-value=1.2e+03 Score=30.59 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=55.6
Q ss_pred Hhhhhcc----ccchhHHHHHhhhcccccccC----c-cchhhHHHHHHHHHhh---chhHHHHHHHHHHHHHHhhchHH
Q 008918 72 AHLDLIE----EEELGVRVQAIRGLPLFCKDT----P-EYLSKIVDILVQLLAA---EEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 72 a~lDLcE----Ded~~IR~qAIk~Lp~lck~~----~-e~~~riaDVL~QLLqs---dd~~E~~~v~~aL~sllk~d~k~ 139 (549)
.+.-+|| ++.=.+|+|+.+.+-.+|..- + +++.|+++.|-+=|+. |...|...+=-+..+....+.+.
T Consensus 1398 iLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~ 1477 (1702)
T KOG0915|consen 1398 ILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKR 1477 (1702)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHH
Confidence 4445565 444678999999998887332 2 6788999998887777 55555544444344445555555
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 008918 140 SLTALFKHIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 140 tL~~lf~qI~~~~e~~~eE~vREr~l~F 167 (549)
...++|+-.. +.++++..++
T Consensus 1478 ~~~si~~A~~--------~e~sr~~~~y 1497 (1702)
T KOG0915|consen 1478 NMSSIEHAVM--------EEVSRREAKY 1497 (1702)
T ss_pred hchHHHHHHH--------HHHHHHHhHH
Confidence 5557776655 4555655554
No 208
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=22.84 E-value=1e+02 Score=28.79 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=35.5
Q ss_pred HHhhhhHHhhccCccc--hHHHHHHhhhhccccchhHHHHHhhhccc
Q 008918 50 LAAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPL 94 (549)
Q Consensus 50 LaaQfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~ 94 (549)
.+|..+-+|++..|+- -.+.++.++++|...+..-|+.+++.+..
T Consensus 58 ~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (174)
T smart00324 58 DVAGLLKLFLRELPEPLIPYELYEEFIEAAKVEDETERLRALRELIS 104 (174)
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5788899999999984 77789999999987777677666665443
No 209
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.61 E-value=1.8e+02 Score=24.82 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHhh
Q 008918 181 KPQEEMERHITDLIKKSLE---DVTGAEFRMFMDFLKS 215 (549)
Q Consensus 181 ~~~eE~Ee~i~~~ikKvL~---dVT~~EF~l~m~iL~~ 215 (549)
.+.+|++..|-..+.+.|. =||-+||+....+|..
T Consensus 24 ~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~ 61 (79)
T PF04380_consen 24 GPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLAR 61 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHH
Confidence 3467888888777777664 6999999998888773
No 210
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=22.48 E-value=83 Score=21.15 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.4
Q ss_pred hHHHHHhhhcccccccCccchhhHHHHHHHHHhh
Q 008918 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (549)
Q Consensus 83 ~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqs 116 (549)
.||..|+..|-.+.. ++..+.|.++|++
T Consensus 2 ~vR~~aa~aLg~~~~------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC------HhHHHHHHHHhcC
Confidence 588999999988843 3677888888765
No 211
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=22.38 E-value=55 Score=37.74 Aligned_cols=10 Identities=0% Similarity=0.165 Sum_probs=4.2
Q ss_pred ChHHHHHHHH
Q 008918 249 DADHIDRLIS 258 (549)
Q Consensus 249 D~e~idRli~ 258 (549)
+.+..++.|.
T Consensus 108 ~~e~A~~Ai~ 117 (578)
T TIGR01648 108 GKEEAKEAVK 117 (578)
T ss_pred CHHHHHHHHH
Confidence 3344444443
No 212
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=22.00 E-value=96 Score=32.89 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=40.0
Q ss_pred hhhhHHhhccCccchHHHHHHhhhhcc---ccchhHHHHHhhhcccccccCccchhhHHHHHH
Q 008918 52 AQLIPRFFKFFPDLSSRAVDAHLDLIE---EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILV 111 (549)
Q Consensus 52 aQfI~kffk~FP~L~e~Ai~a~lDLcE---Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~ 111 (549)
++|..+||..=|+ .++-+.||+. +-...||..|++.|-.++.+. .+..||+.
T Consensus 253 ~~~~~~~l~~dp~----l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~----~~~~~V~~ 307 (329)
T PF06012_consen 253 SQFSSKLLEQDPE----LVNELVELISPEEKVPMDIQTAALRALEAISHKR----PRCSDVLR 307 (329)
T ss_pred HHHHHHHHhcChH----HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc----ccHHHHHH
Confidence 4788999999998 5667777776 344668999999999999865 35666554
No 213
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=21.95 E-value=1.1e+03 Score=27.84 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=60.3
Q ss_pred hhhhHHhhc-cCccc-hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhc-hhH--------
Q 008918 52 AQLIPRFFK-FFPDL-SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE-EIV-------- 120 (549)
Q Consensus 52 aQfI~kffk-~FP~L-~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsd-d~~-------- 120 (549)
.-+.+|... +|+.+ .++....+-.+|+.+...+--.|++.|..+|.+.+...-.+ |-|.+... ...
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~l---ldqaia~~~~~it~~~v~~~ 240 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSL---TDQAIASGNGQVTTDDVSAM 240 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH---HHHHHHhcCCCcCHHHHHHH
Confidence 334544322 36677 44555566677877766677788888888888876432222 22333221 100
Q ss_pred ----HHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 121 ----ERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 121 ----E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
..+.+-+-|..+.+.|+...+..+ .++.. ...+-+.+=+.++.|++.
T Consensus 241 lg~~d~~~~~~ll~al~~~d~~~~l~~~-~~l~~--~g~d~~~~L~~l~~~lrd 291 (647)
T PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALI-NQLAE--RGPDWEGLLVELLELLHR 291 (647)
T ss_pred HccCCHHHHHHHHHHHHcCCHHHHHHHH-HHHHH--hCCCHHHHHHHHHHHHHH
Confidence 022344555566667877766654 33331 112223344566666665
No 214
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=21.90 E-value=3.1e+02 Score=30.46 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhccccc
Q 008918 184 EEMERHITDLIKKSLEDVT 202 (549)
Q Consensus 184 eE~Ee~i~~~ikKvL~dVT 202 (549)
+++++||.+.+..|-..+|
T Consensus 227 ~~l~~Yi~~~M~~vAPNlt 245 (395)
T COG1498 227 EQLEEYIESKMSEIAPNLT 245 (395)
T ss_pred HHHHHHHHHHHHHhCccHH
Confidence 3455555555555544444
No 215
>PHA02713 hypothetical protein; Provisional
Probab=21.65 E-value=3.8e+02 Score=30.53 Aligned_cols=101 Identities=9% Similarity=0.067 Sum_probs=58.4
Q ss_pred hhHHHHHHHhc--CCHHHHHHHhhhhHHhhccCccchH-HHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHH
Q 008918 32 KDYEGIIEAAK--TSLKAKQLAAQLIPRFFKFFPDLSS-RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (549)
Q Consensus 32 ~~Y~~Il~~~k--g~~k~K~LaaQfI~kffk~FP~L~e-~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaD 108 (549)
+.-+.+|.++. .=+.+|.++++|+.+...-- +.-. -++=+... |.+-...++.-..+.++.+|+. +|++.=..+
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~-NCl~i~~~~~~~~-~~~L~~~a~~~i~~~f~~v~~~-~ef~~L~~~ 170 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHD-TCIYMYHRLYEMS-HIPIVKYIKRMLMSNIPTLITT-DAFKKTVFE 170 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCcc-chHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhCC-hhhhhCCHH
Confidence 44566777666 77889999999998776511 1110 00001111 1111224555667888888864 588777888
Q ss_pred HHHHHHhhchh----HHHHHHHHHHHHHHhhc
Q 008918 109 ILVQLLAAEEI----VERDAVHKALMSLLRQD 136 (549)
Q Consensus 109 VL~QLLqsdd~----~E~~~v~~aL~sllk~d 136 (549)
-|.++|.+|+. .|-++. +|++.-++.|
T Consensus 171 ~l~~lL~~d~~l~v~~Ee~v~-eav~~W~~~d 201 (557)
T PHA02713 171 ILFDIISTNDNVYLYREGYKV-TILLKWLEYN 201 (557)
T ss_pred HHHHHhccccccCCCcHHHHH-HHHHHHHhcC
Confidence 88888888762 354444 3334434433
No 216
>PRK12678 transcription termination factor Rho; Provisional
Probab=21.62 E-value=70 Score=37.36 Aligned_cols=11 Identities=64% Similarity=0.912 Sum_probs=5.2
Q ss_pred CCCCCCCCccc
Q 008918 527 GGRGGIRGRGR 537 (549)
Q Consensus 527 ~~~~g~rgrgr 537 (549)
+||+|+|+|.|
T Consensus 259 ~~~~~~~~~~~ 269 (672)
T PRK12678 259 GGRRGRRFRDR 269 (672)
T ss_pred cccccccchhh
Confidence 34555554444
No 217
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.51 E-value=1.4e+03 Score=27.78 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHHHHhhhhcc--c-cchhHHHHHhhhcccccccCccchh
Q 008918 68 RAVDAHLDLIE--E-EELGVRVQAIRGLPLFCKDTPEYLS 104 (549)
Q Consensus 68 ~Ai~a~lDLcE--D-ed~~IR~qAIk~Lp~lck~~~e~~~ 104 (549)
.-|++++.-.+ | .+...|.+|+-+|-++.|..|+++.
T Consensus 498 ~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy 537 (859)
T KOG1241|consen 498 AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY 537 (859)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH
Confidence 34666666665 3 6788999999999999888777644
No 218
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=21.16 E-value=3.3e+02 Score=22.58 Aligned_cols=38 Identities=34% Similarity=0.615 Sum_probs=29.8
Q ss_pred hccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHh
Q 008918 267 FLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEI 306 (549)
Q Consensus 267 fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~ 306 (549)
...|.+.+..++-+.+.++-. ++++..|.++++.+|+.
T Consensus 31 ~~~G~s~~~Il~~l~~~l~~~--~~~~~~k~~i~~~la~~ 68 (89)
T PF08542_consen 31 LVEGYSASDILKQLHEVLVES--DIPDSQKAEILKILAEI 68 (89)
T ss_dssp HHTT--HHHHHHHHHHHHHTS--TSSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHH
Confidence 345777888888888888776 78888999999999987
No 219
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=21.08 E-value=2.3e+02 Score=29.57 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=46.6
Q ss_pred hHHHHHHhhhhcc-ccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHH
Q 008918 66 SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTAL 144 (549)
Q Consensus 66 ~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~l 144 (549)
++.+++-++||.+ ...+.|.++++..|..++.|+|.+.. .+=..+--.+++.+
T Consensus 131 r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r--------------------------~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 131 REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR--------------------------DFEELNGLSTVCSL 184 (257)
T ss_pred hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH--------------------------HHHHhCCHHHHHHH
Confidence 3556666777764 34566666666666666655553221 11222333344555
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHHHhhcccc
Q 008918 145 FKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (549)
Q Consensus 145 f~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l 175 (549)
|+.= +.+..+|-|++.||.-.+.+-
T Consensus 185 lk~~------~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSK------STDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred Hccc------cccHHHhHHHHHHHHHHHccc
Confidence 5532 446789999999999888774
No 220
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=21.03 E-value=2.3e+02 Score=32.40 Aligned_cols=81 Identities=23% Similarity=0.255 Sum_probs=51.9
Q ss_pred HHHHHHhhhhcc-ccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHH--------------HHHHHHHHH
Q 008918 67 SRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER--------------DAVHKALMS 131 (549)
Q Consensus 67 e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~--------------~~v~~aL~s 131 (549)
+.=|++++.+-= .-++.++..=++=|-.|+-.++.|+..+.+.|++.+.-...... +.||.+|..
T Consensus 72 ~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~ 151 (563)
T PF05327_consen 72 KQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQK 151 (563)
T ss_dssp HHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHH
Confidence 334556655522 55667766666667777888899999999999998887555433 469999999
Q ss_pred HHhhchHH--HHHHHHHh
Q 008918 132 LLRQDVKA--SLTALFKH 147 (549)
Q Consensus 132 llk~d~k~--tL~~lf~q 147 (549)
+++.=|-+ +|..++.+
T Consensus 152 Il~lvP~s~~~L~~~l~~ 169 (563)
T PF05327_consen 152 ILRLVPTSPSFLIPILVQ 169 (563)
T ss_dssp HHHH-GGGHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 99986643 34444443
No 221
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=20.70 E-value=2.9e+02 Score=24.85 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=36.0
Q ss_pred HHhhhhHHhhccCccc--hHHHHHHhhhhccccchhHHHHHhhhccc
Q 008918 50 LAAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPL 94 (549)
Q Consensus 50 LaaQfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~ 94 (549)
-+|..|-+|++..|+- ..+.++.+++..+..+..-++++++.+-.
T Consensus 55 ~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 101 (151)
T PF00620_consen 55 DVASLLKRFLRELPEPLIPSELYDKFIAASKSADEEEQIEAIRSLLQ 101 (151)
T ss_dssp HHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTSSSHHHHHHHHHHHHT
T ss_pred hccccceeeeeccccchhhhhHHHHHhhhhccchhhHHHHHHHHhhh
Confidence 5678999999999876 77888888888887777777777776655
No 222
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=20.69 E-value=4.4e+02 Score=26.95 Aligned_cols=86 Identities=15% Similarity=0.264 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHhh---chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHH
Q 008918 119 IVERDAVHKALMSLLRQ---DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIK 195 (549)
Q Consensus 119 ~~E~~~v~~aL~sllk~---d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ik 195 (549)
.-=+++++|.+.-||.. +.+.++.++..-+.. +..|-....+|..++..-+ .++ +.+.=++|+.+|.
T Consensus 21 ~rrlevlr~ci~~if~~k~~e~~k~~~av~~~lk~-------~~aR~~~~~~L~~~~~~~k-~~L--~~~qF~~lv~lin 90 (225)
T PF12335_consen 21 ARRLEVLRNCISFIFDNKILEARKSLPAVLRALKS-------RSARQAFCRELSKHVKSNK-AVL--DDQQFDYLVRLIN 90 (225)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHhcCC-ccC--CHHHHHHHHHHHH
Confidence 34567889999999876 556667776666652 5678888888888876643 366 5677789999999
Q ss_pred HhcccccHH-HHHHHHHHHh
Q 008918 196 KSLEDVTGA-EFRMFMDFLK 214 (549)
Q Consensus 196 KvL~dVT~~-EF~l~m~iL~ 214 (549)
.+|+|.++. |+-....||.
T Consensus 91 ~aLq~~s~~dd~~~Aa~LL~ 110 (225)
T PF12335_consen 91 CALQDCSESDDYGIAAALLP 110 (225)
T ss_pred HHHHHHHhccchHHHHHHHH
Confidence 999876654 6654444443
No 223
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.69 E-value=6.5e+02 Score=29.64 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHhhcccc------hh-hhcCChHHHHHHH--HHHHHH------hcccccHHHHHHHHHHHhhccccCC
Q 008918 157 DEFIREKVLSFIRDKVFPL------KA-ELLKPQEEMERHI--TDLIKK------SLEDVTGAEFRMFMDFLKSLSLFGE 221 (549)
Q Consensus 157 eE~vREr~l~Fl~~kl~~l------~~-e~~~~~eE~Ee~i--~~~ikK------vL~dVT~~EF~l~m~iL~~l~~~~t 221 (549)
++..+.+++..+.+++..+ |+ +++ |.+.+.+++ +.+|-+ +.+|+-..+|.++.+.+-
T Consensus 398 ~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLl-Ppp~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vl------- 469 (655)
T KOG3758|consen 398 EDISKQRFIGYLEDHVKKLMRKELSPPSDLL-PPPAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVL------- 469 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccC-CCHHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHH-------
Confidence 4567889999988876543 22 444 445565543 222222 345666777876654332
Q ss_pred CCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHH
Q 008918 222 KAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLK 301 (549)
Q Consensus 222 ~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK 301 (549)
+++++++..-|... ++.+|...+=-.|+|+.+.....++..--.+.+.++-.++--+++.|. .
T Consensus 470 -------dpilq~c~~sae~~--lp~~d~~~~if~iNcL~~iks~l~~~e~~~~~~e~lq~~ie~~~d~L~--------t 532 (655)
T KOG3758|consen 470 -------DPILQMCQKSAEAH--LPTSDKGSLIFMINCLDLIKSRLARYEFLDERVEMLQAKIEAYLDTLV--------T 532 (655)
T ss_pred -------HHHHHHHHHHHHhc--CCCcccccceehhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 56777777665433 666777766677889888877777665555565655544433332220 0
Q ss_pred HHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCC--CCCCccchHHHHHHHHHHHH
Q 008918 302 ALAEISPYTTPQDSRQILPSVAVLL-KYMPLRK--TGGEEMNFTYVECLLYTFHH 353 (549)
Q Consensus 302 ~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~--~~~~~l~fS~vEcLLyafh~ 353 (549)
+.+ ...-+..=+-.+|+.+ ..-|..+ +..+++.-..+-.-+-.|..
T Consensus 533 ~q~------s~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s~~~~~~i~~fd~ 581 (655)
T KOG3758|consen 533 LQV------SFLLENTGLSDLYQKFNMITPEDSVLSLDPDLESALLDEAIVKFDM 581 (655)
T ss_pred HHH------HHHHHHcChHHHHHHHHhcCcchhhhhccccccHHHHHHHHHHHHH
Confidence 000 0001222355677777 7777766 34556665555444445544
No 224
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.61 E-value=3.7e+02 Score=32.10 Aligned_cols=71 Identities=27% Similarity=0.411 Sum_probs=46.4
Q ss_pred hhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCcc----chhhHHHHHHHHHhhchhHHHHHHHHH
Q 008918 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE----YLSKIVDILVQLLAAEEIVERDAVHKA 128 (549)
Q Consensus 53 QfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e----~~~riaDVL~QLLqsdd~~E~~~v~~a 128 (549)
=+||||+.+|- ...+.||.-|+.-+-++--.+++ ++.+.--+|-+|-+.+++.++..|=.|
T Consensus 174 ~mipkfl~f~~---------------h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~a 238 (885)
T KOG2023|consen 174 IMIPKFLQFFK---------------HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRA 238 (885)
T ss_pred HhHHHHHHHHh---------------CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 36777777663 33556666666666555433332 366677777777777888888888888
Q ss_pred HHHHHhhchH
Q 008918 129 LMSLLRQDVK 138 (549)
Q Consensus 129 L~sllk~d~k 138 (549)
|+-|+..-|-
T Consensus 239 lv~Llevr~d 248 (885)
T KOG2023|consen 239 LVFLLEVRPD 248 (885)
T ss_pred HHHHHHhcHH
Confidence 8888766553
No 225
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=20.53 E-value=9.9e+02 Score=29.30 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=23.4
Q ss_pred ChhhhhHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 008918 382 DFSDCYKDFTERLTT----VEDLTRATMKKLTQGLA 413 (549)
Q Consensus 382 D~~~~~kdF~~RLqy----la~~~q~yikkL~~~l~ 413 (549)
.+.+++++|.+||.- |++..+.-+.+-+++..
T Consensus 769 ~~~e~~~~~ea~leaer~rl~erk~~R~eerk~~~~ 804 (988)
T KOG2072|consen 769 EYEEKLKQFEARLEAERNRLAERKRARIEERKQAYY 804 (988)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457899999999974 66777777777766443
No 226
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=20.46 E-value=1.7e+03 Score=27.84 Aligned_cols=262 Identities=15% Similarity=0.152 Sum_probs=122.2
Q ss_pred HHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHH-HHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHH
Q 008918 48 KQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR-VQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH 126 (549)
Q Consensus 48 K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR-~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~ 126 (549)
|.|+.+.-|+--...--++++-.++.+.= .-+| .-.=++|.++||... +..-||--..-=+||--+ =-++..
T Consensus 977 ~El~~tv~P~v~rs~~p~~~q~~~s~itk-----l~~~eg~~kenI~ql~KSkn-l~dtvar~i~~~~Qtsg~-lQ~a~r 1049 (1283)
T KOG1916|consen 977 KELAKTVGPCVARSVEPVIEQTVSSAITK-----LFQREGIGKENINQLLKSKN-LEDTVARQIQAQFQTSGP-LQEALR 1049 (1283)
T ss_pred HHHHhhcchhhhhhhHHHHHHHHHHHHHH-----HHHhhchHHHHHHHHHhhcc-HHHHHHHHHHHHHhccch-HHHHHH
Confidence 44555555555555544444433332210 0112 233356677887653 444444332223344333 222344
Q ss_pred HHHHHHHhhchHHHHHHHHHhhhcCCCCCChHH----HHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhccccc
Q 008918 127 KALMSLLRQDVKASLTALFKHIGSVDEPSTDEF----IREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVT 202 (549)
Q Consensus 127 ~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~----vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT 202 (549)
.|+-|-+-=.+..+--+||.||- +. +.|-+-.|+.. +...+. -+.+..|.+.....-
T Consensus 1050 esm~SsviPafEKScqaMF~Qi~--------daF~~Gi~e~~~q~~s~-~~s~~q----r~a~nrE~~~~ql~~------ 1110 (1283)
T KOG1916|consen 1050 ESMESSVIPAFEKSCQAMFQQID--------DAFQKGIQEHTQQLISS-ASSVPQ----RQALNRELAEAQLNG------ 1110 (1283)
T ss_pred HHhhhhccHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHH-Hhccch----hhhhhhhHHHHHHHH------
Confidence 44444444456666778999995 33 34544445432 222221 122233333332211
Q ss_pred HHHHHHHHHHH-hhccccCCCCc----hhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhcc-CCChhhH
Q 008918 203 GAEFRMFMDFL-KSLSLFGEKAP----TERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLR-GASGSKF 276 (549)
Q Consensus 203 ~~EF~l~m~iL-~~l~~~~t~~~----~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~-~v~st~f 276 (549)
|...+ +.+...++.-+ .+++++++.+..+++- +|. +.|.|+|.--+---.|-+. ..+--.+
T Consensus 1111 ------L~~t~~sa~~~~~~pl~~~l~~~~~~~~~~a~~~a~~-----~P~--~~i~~ll~~~~~~~af~~al~~~d~~l 1177 (1283)
T KOG1916|consen 1111 ------LALTAASATEQGSNPLVTQLSAGPVGALLEAMRSAAM-----TPT--TEISQLLSEGKYNEAFTQALQASDLSL 1177 (1283)
T ss_pred ------HHHHHHHHhhcCCcchHHHHhcchHHHHHHHHHHccC-----CcH--HHHHHHHhcchHHHHHHHHHHhccchh
Confidence 11111 11222211111 1455677766655432 222 5678887633222222222 2233678
Q ss_pred HHHHHhhhcc------------------cCCCCC------hhhhh-hHHHHHHHhCCC--CChhhhhhhHHHHHHHh-hh
Q 008918 277 LNYLNKHIIP------------------VFDKLP------EERKL-DLLKALAEISPY--TTPQDSRQILPSVAVLL-KY 328 (549)
Q Consensus 277 ~~y~~~~vlP------------------~l~~l~------e~~kl-~lLK~lAE~s~~--~~~~da~~~l~~i~~~L-~y 328 (549)
|+|+|.++=- -+.+|. -..|+ |+=-+++.+-+- .+...|+.+++.||+.| .+
T Consensus 1178 v~~~~~~~d~~~~~a~~~~~l~q~vllsliqqla~d~s~~~~~k~~~~~~~~~ain~sd~~~~~ha~~v~~~~y~~~~~~ 1257 (1283)
T KOG1916|consen 1178 VSWLCSQVDLRQLFAMNPCPLSQGVLLSLIQQLACDISTDTSLKLRYLTEAVLAINPSDPITRVHARPVFEQVYQILHQF 1257 (1283)
T ss_pred hhHhhhccCHHHhcCCCCCcchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCccCchhHhhhhHHHHHHHHHHHHH
Confidence 8888886511 011110 02344 333333333221 13455888999999999 88
Q ss_pred cCCCCCCCCccchHHHHHHHHHHHH
Q 008918 329 MPLRKTGGEEMNFTYVECLLYTFHH 353 (549)
Q Consensus 329 mP~~~~~~~~l~fS~vEcLLyafh~ 353 (549)
.-.|| -|||-|--++.+.-.
T Consensus 1258 ~~~~~-----~~~s~vrlim~~i~s 1277 (1283)
T KOG1916|consen 1258 RNAPP-----SNVSAVRLIMHVINS 1277 (1283)
T ss_pred hcCCc-----cchHHHHHHHHHHHH
Confidence 76555 468888877766543
No 227
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=20.44 E-value=1.4e+02 Score=23.22 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=24.9
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
-||.|.|.+.|.. +...-.++.++|+.+|..
T Consensus 9 NVll~fl~~~e~~-r~~ll~vi~tlL~fs~~e 39 (46)
T smart00755 9 NVLLQFLTLRESE-RETLLKVISTVLQLSPEE 39 (46)
T ss_pred HHHHHHhccCcch-HHHHHHHHHHHhCCCHHH
Confidence 3789999998875 777778888888887764
No 228
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=20.26 E-value=5.4e+02 Score=25.63 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhh
Q 008918 187 ERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPF 266 (549)
Q Consensus 187 Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~ 266 (549)
|..++.+||+++ .++|.+|.++..+.+.-.+++ +|+|-|++++..--+ ..-|.+.|+.-.+-.|.-|
T Consensus 55 E~lL~~LVk~~i----Kk~~~~~~elv~~~~~~~~~h--~~iq~l~~iir~~Y~-------D~~D~~~rL~~tLa~a~~y 121 (182)
T PF06861_consen 55 EALLCWLVKQSI----KKNFKQLAELVCQPSHNADKH--AHIQWLMSIIRAVYR-------DHYDSWSRLCATLAYASMY 121 (182)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhccCCCCchh--HHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHH
Confidence 567778888875 478999999777776655444 677878888875311 2346789998888888777
Q ss_pred hccCCC---------hhhHHHHHHhhhcccCC
Q 008918 267 FLRGAS---------GSKFLNYLNKHIIPVFD 289 (549)
Q Consensus 267 fs~~v~---------st~f~~y~~~~vlP~l~ 289 (549)
.-+.-. ++.+-+|++.+=.+.|.
T Consensus 122 ~~~~l~~d~e~~s~v~~~lA~Fy~~~r~~Wla 153 (182)
T PF06861_consen 122 AMRNLLNDHENASLVSHALAHFYLRYRRAWLA 153 (182)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 633332 34455566655444433
No 229
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=9.6e+02 Score=29.62 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=69.6
Q ss_pred chhHHHHHhhhcccc-cccCccc-----hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCC
Q 008918 81 ELGVRVQAIRGLPLF-CKDTPEY-----LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEP 154 (549)
Q Consensus 81 d~~IR~qAIk~Lp~l-ck~~~e~-----~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~ 154 (549)
|+....+|+.+|-++ .-.|.|- +.-++-||++||+.|..-+. ..+| --.|+-||.-+-
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DI--Ml~A---------cRaltyl~evlP----- 244 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDI--MLLA---------CRALTYLCEVLP----- 244 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHH--HHHH---------HHHHHHHHhhcc-----
Confidence 444444444444333 2333332 44588999999999877332 2222 224555565442
Q ss_pred CChH-HHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHH--HHHHHHHhhccccCC
Q 008918 155 STDE-FIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEF--RMFMDFLKSLSLFGE 221 (549)
Q Consensus 155 ~~eE-~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF--~l~m~iL~~l~~~~t 221 (549)
..-+ .|++.+|--+.+||-.| +++ ++-|..+.-++++=++-..+=. -.+|.+|..|-.|.+
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~I--eyi----DvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi 308 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTI--EYI----DVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI 308 (1051)
T ss_pred chhheeecccchHHHHHhhhhh--hhh----HHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH
Confidence 2223 36788888888888766 455 7777777776665443332222 257888888888864
Done!