Query 008918
Match_columns 549
No_of_seqs 89 out of 105
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u0r_A Apoptosis inhibitor 5; 100.0 3E-144 1E-148 1151.2 43.6 444 8-499 4-466 (507)
2 2vgl_B AP-2 complex subunit be 98.2 0.00044 1.5E-08 75.1 26.8 134 31-170 48-186 (591)
3 4fdd_A Transportin-1; heat rep 97.8 0.0065 2.2E-07 68.0 27.3 136 30-170 126-282 (852)
4 4fdd_A Transportin-1; heat rep 97.8 0.00036 1.2E-08 78.1 17.2 284 37-332 95-412 (852)
5 1w63_A Adapter-related protein 97.8 0.0011 3.6E-08 72.8 20.5 133 34-170 72-205 (618)
6 2vgl_A Adaptor protein complex 97.8 0.0025 8.6E-08 70.2 22.8 283 43-360 123-437 (621)
7 1b3u_A Protein (protein phosph 97.8 0.0012 4E-08 69.0 19.1 157 34-202 12-177 (588)
8 1b3u_A Protein (protein phosph 97.7 0.0023 7.8E-08 66.8 20.2 251 36-314 285-554 (588)
9 2jdq_A Importin alpha-1 subuni 97.7 0.0096 3.3E-07 60.1 23.7 295 34-363 22-355 (450)
10 2vgl_B AP-2 complex subunit be 97.7 0.0051 1.7E-07 66.8 22.9 121 42-169 97-227 (591)
11 4hxt_A De novo protein OR329; 97.7 0.0063 2.2E-07 56.3 20.4 131 35-170 5-154 (252)
12 2jdq_A Importin alpha-1 subuni 97.6 0.006 2.1E-07 61.6 21.2 133 32-169 64-217 (450)
13 1ibr_B P95, importin beta-1 su 97.6 0.0087 3E-07 60.4 22.0 128 37-170 95-243 (462)
14 2bpt_A Importin beta-1 subunit 97.6 0.0067 2.3E-07 66.6 22.8 271 44-330 194-508 (861)
15 1ibr_B P95, importin beta-1 su 97.6 0.0068 2.3E-07 61.2 20.8 294 37-357 43-396 (462)
16 2bpt_A Importin beta-1 subunit 97.6 0.054 1.8E-06 59.4 29.3 159 36-202 99-279 (861)
17 4db8_A Armadillo-repeat protei 97.6 0.0035 1.2E-07 58.8 17.2 138 28-170 8-164 (252)
18 4db6_A Armadillo repeat protei 97.5 0.0036 1.2E-07 57.2 16.9 136 30-170 10-164 (210)
19 2qk2_A LP04448P; mini spindles 97.5 0.0098 3.4E-07 56.5 20.2 154 43-203 27-190 (242)
20 4hxt_A De novo protein OR329; 97.5 0.0035 1.2E-07 58.0 16.2 133 33-170 45-196 (252)
21 1qgr_A Protein (importin beta 97.5 0.0089 3E-07 65.8 22.0 128 37-170 95-243 (876)
22 4b8j_A Importin subunit alpha- 97.5 0.0057 2E-07 64.2 19.5 300 30-365 72-410 (528)
23 1wa5_B Importin alpha subunit; 97.5 0.015 5.2E-07 61.2 22.5 133 32-169 87-240 (530)
24 1qgr_A Protein (importin beta 97.4 0.0092 3.2E-07 65.6 21.5 295 44-354 187-539 (876)
25 1wa5_B Importin alpha subunit; 97.4 0.0068 2.3E-07 63.9 18.8 293 34-360 132-461 (530)
26 4db6_A Armadillo repeat protei 97.4 0.0017 5.9E-08 59.3 12.4 132 33-169 55-205 (210)
27 4b8j_A Importin subunit alpha- 97.3 0.0027 9.1E-08 66.8 14.6 294 34-360 119-447 (528)
28 1xqr_A HSPBP1 protein; armadil 97.3 0.0031 1.1E-07 63.6 14.4 132 34-170 83-235 (296)
29 3ltj_A Alpharep-4; protein eng 97.2 0.018 6.1E-07 52.5 16.7 121 29-169 11-132 (201)
30 1oyz_A Hypothetical protein YI 97.2 0.0093 3.2E-07 57.3 15.3 116 42-169 102-217 (280)
31 3gs3_A Symplekin, LD45768P; he 97.1 0.0037 1.3E-07 62.5 12.6 21 344-364 231-251 (257)
32 3ltm_A Alpha-REP4; protein eng 97.1 0.02 6.8E-07 52.6 16.7 121 29-169 16-137 (211)
33 3ltm_A Alpha-REP4; protein eng 97.0 0.0067 2.3E-07 55.8 11.8 119 31-169 49-168 (211)
34 3ltj_A Alpharep-4; protein eng 97.0 0.0086 2.9E-07 54.6 12.4 146 31-196 44-195 (201)
35 1u6g_C TIP120 protein, CAND1; 96.9 0.088 3E-06 61.3 22.9 273 43-329 345-659 (1230)
36 4db8_A Armadillo-repeat protei 96.9 0.0092 3.1E-07 55.9 12.0 132 34-170 56-206 (252)
37 1oyz_A Hypothetical protein YI 96.8 0.23 8E-06 47.4 21.5 123 35-169 26-153 (280)
38 3o2t_A Symplekin; heat repeat, 96.7 0.017 5.8E-07 61.0 13.6 74 62-135 57-130 (386)
39 1u6g_C TIP120 protein, CAND1; 96.7 0.042 1.4E-06 64.0 18.0 136 33-172 7-162 (1230)
40 2z6g_A B-catenin; FULL-length, 96.5 0.072 2.5E-06 60.0 18.1 120 43-169 127-259 (780)
41 1w63_A Adapter-related protein 96.4 0.081 2.8E-06 57.9 17.4 118 47-170 293-411 (618)
42 2vgl_A Adaptor protein complex 96.3 0.39 1.3E-05 52.8 22.3 130 34-170 76-213 (621)
43 3ul1_B Importin subunit alpha- 96.0 2 7E-05 45.3 25.9 117 33-149 58-195 (510)
44 1te4_A Conserved protein MTH18 96.0 0.022 7.5E-07 49.3 8.1 112 36-168 16-128 (131)
45 3gs3_A Symplekin, LD45768P; he 95.9 0.026 9E-07 56.3 9.5 54 43-96 65-118 (257)
46 1te4_A Conserved protein MTH18 95.9 0.014 4.9E-07 50.4 6.5 85 34-130 44-129 (131)
47 1xqr_A HSPBP1 protein; armadil 95.7 0.029 9.9E-07 56.5 9.0 121 43-169 52-192 (296)
48 3o2t_A Symplekin; heat repeat, 95.7 0.019 6.4E-07 60.6 7.9 139 7-169 39-179 (386)
49 3tpo_A Importin subunit alpha- 95.7 1.6 5.5E-05 46.2 22.7 117 33-149 77-214 (529)
50 1jdh_A Beta-catenin; beta-cate 95.5 0.52 1.8E-05 48.6 17.8 102 63-169 12-126 (529)
51 2qk2_A LP04448P; mini spindles 95.4 0.14 4.7E-06 48.5 12.0 68 64-133 94-161 (242)
52 2z6h_A Catenin beta-1, beta-ca 95.4 0.53 1.8E-05 51.1 18.0 69 63-131 9-83 (644)
53 1jdh_A Beta-catenin; beta-cate 95.3 0.92 3.2E-05 46.7 18.8 171 36-218 105-295 (529)
54 2qk1_A Protein STU2; STU2P, XM 95.2 0.23 8E-06 48.3 13.3 140 31-170 55-217 (249)
55 2qk1_A Protein STU2; STU2P, XM 95.2 0.35 1.2E-05 47.0 14.3 162 32-202 19-204 (249)
56 1wa5_C Importin alpha RE-expor 94.9 1 3.5E-05 51.3 19.5 150 44-199 471-651 (960)
57 3tpo_A Importin subunit alpha- 94.7 1.7 5.8E-05 46.0 19.1 120 45-169 223-360 (529)
58 2z6g_A B-catenin; FULL-length, 94.4 4.1 0.00014 45.8 22.5 122 42-169 161-301 (780)
59 3ul1_B Importin subunit alpha- 94.0 1.8 6.1E-05 45.8 17.6 96 45-140 204-309 (510)
60 3l9t_A Putative uncharacterize 93.7 0.14 5E-06 50.7 7.8 104 43-149 116-222 (240)
61 2x19_B Importin-13; nuclear tr 92.9 6.9 0.00024 44.0 21.0 137 248-394 785-930 (963)
62 2db0_A 253AA long hypothetical 92.7 6.1 0.00021 38.6 17.0 205 66-348 30-242 (253)
63 2x1g_F Cadmus; transport prote 92.3 5.2 0.00018 45.2 19.0 89 44-135 519-616 (971)
64 3tjz_B Coatomer subunit gamma; 92.2 0.56 1.9E-05 48.8 10.0 99 38-139 74-173 (355)
65 2z6h_A Catenin beta-1, beta-ca 92.2 0.99 3.4E-05 48.9 12.4 90 43-132 236-334 (644)
66 3b2a_A TON_1937, putative unch 91.1 8.3 0.00028 38.6 16.5 157 11-170 51-215 (265)
67 3opb_A SWI5-dependent HO expre 91.0 0.82 2.8E-05 52.2 10.5 96 68-170 606-725 (778)
68 1wa5_C Importin alpha RE-expor 90.7 16 0.00054 41.6 20.8 92 43-134 49-152 (960)
69 1lsh_A Lipovitellin (LV-1N, LV 90.5 13 0.00046 43.4 20.4 137 8-148 325-480 (1056)
70 2x1g_F Cadmus; transport prote 90.3 4.6 0.00016 45.7 15.9 71 45-115 557-638 (971)
71 1xm9_A Plakophilin 1; armadill 90.1 0.73 2.5E-05 48.3 8.5 106 43-148 14-136 (457)
72 3m1i_C Exportin-1; heat repeat 90.0 10 0.00035 43.7 18.7 87 51-137 520-621 (1049)
73 3ibv_A Exportin-T; karyopherin 89.7 35 0.0012 39.6 23.7 64 42-105 506-574 (980)
74 3ibv_A Exportin-T; karyopherin 89.5 11 0.00037 43.8 18.5 280 14-303 619-956 (980)
75 2x19_B Importin-13; nuclear tr 88.3 37 0.0013 38.1 24.8 91 43-135 501-600 (963)
76 4hat_C Exportin-1; heat repeat 84.9 6.3 0.00022 46.1 13.0 290 68-401 495-835 (1023)
77 3tt9_A Plakophilin-2; cell adh 82.9 3.2 0.00011 40.5 8.0 98 35-132 11-122 (233)
78 3now_A UNC-45 protein, SD10334 82.7 22 0.00074 40.8 15.9 131 34-169 538-690 (810)
79 4ffb_C Protein STU2; tubulin f 81.5 6.3 0.00022 38.0 9.5 127 43-171 67-210 (278)
80 3nmw_A APC variant protein; AR 80.8 1.5 5.3E-05 44.9 5.1 70 69-138 264-338 (354)
81 2jak_A Serine/threonine-protei 80.3 48 0.0016 35.0 16.3 65 276-351 297-362 (392)
82 3jxy_A Alkylpurine DNA glycosy 79.9 3.2 0.00011 40.0 6.7 97 45-147 111-208 (232)
83 3u0r_A Apoptosis inhibitor 5; 79.7 60 0.002 35.4 17.0 102 68-170 29-130 (507)
84 3gjx_A Exportin-1; transport, 79.5 32 0.0011 40.7 16.1 289 68-400 521-860 (1073)
85 3l6x_A Catenin delta-1; cateni 79.1 4.1 0.00014 44.9 8.1 105 30-134 46-163 (584)
86 3now_A UNC-45 protein, SD10334 78.8 3 0.0001 47.9 7.1 65 69-134 624-694 (810)
87 4hat_C Exportin-1; heat repeat 78.7 78 0.0027 37.0 19.0 103 30-136 14-131 (1023)
88 3dad_A FH1/FH2 domain-containi 76.3 29 0.00099 36.0 12.9 157 34-214 120-302 (339)
89 2npp_B PP2A, B subunit, serine 76.3 43 0.0015 35.9 14.7 58 287-351 292-350 (449)
90 2b6c_A Hypothetical protein EF 76.0 9.6 0.00033 36.3 8.8 87 53-144 112-198 (220)
91 3fga_B Serine/threonine-protei 75.6 86 0.0029 33.1 17.6 66 275-351 251-317 (403)
92 3tjz_B Coatomer subunit gamma; 74.8 11 0.00039 38.9 9.6 114 60-179 59-173 (355)
93 3nmz_A APC variant protein; pr 74.8 2.5 8.6E-05 45.1 4.8 91 47-137 350-453 (458)
94 1xm9_A Plakophilin 1; armadill 73.5 13 0.00046 38.6 9.8 97 69-169 3-112 (457)
95 1lrv_A LRV, leucine-rich repea 73.0 1.6 5.4E-05 42.9 2.5 56 53-128 42-97 (244)
96 3tt9_A Plakophilin-2; cell adh 72.7 11 0.00036 36.7 8.3 67 70-136 10-83 (233)
97 4ady_A RPN2, 26S proteasome re 72.7 9.1 0.00031 44.8 9.0 96 64-166 573-669 (963)
98 3m1i_C Exportin-1; heat repeat 71.8 70 0.0024 36.8 16.1 245 67-326 343-641 (1049)
99 3nmw_A APC variant protein; AR 71.5 11 0.00038 38.5 8.5 88 46-134 47-156 (354)
100 3grl_A General vesicular trans 71.1 1.4E+02 0.0047 33.5 20.2 136 9-170 21-192 (651)
101 3l9t_A Putative uncharacterize 69.5 15 0.0005 36.4 8.5 92 66-170 69-165 (240)
102 3nmz_A APC variant protein; pr 67.7 12 0.00042 39.8 8.1 84 50-134 167-272 (458)
103 1lsh_A Lipovitellin (LV-1N, LV 64.7 23 0.00078 41.5 10.2 76 69-149 472-556 (1056)
104 1hu3_A EIF4GII; heat repeat, t 64.3 35 0.0012 33.3 10.1 88 187-282 8-96 (260)
105 3grl_A General vesicular trans 64.3 11 0.00037 42.4 7.0 116 48-169 107-237 (651)
106 3opb_A SWI5-dependent HO expre 63.7 1.7E+02 0.0059 33.4 16.8 137 48-214 95-237 (778)
107 2db0_A 253AA long hypothetical 61.4 71 0.0024 31.2 11.2 96 43-138 119-214 (253)
108 3b2a_A TON_1937, putative unch 60.6 27 0.00092 35.0 8.3 103 29-133 108-217 (265)
109 3gjx_A Exportin-1; transport, 60.0 2.7E+02 0.0092 32.9 22.5 103 30-137 26-144 (1073)
110 3l6x_A Catenin delta-1; cateni 59.2 22 0.00075 39.2 8.3 96 66-165 46-155 (584)
111 1d9c_A Interferon-gamma; helic 58.3 10 0.00034 34.0 4.4 55 9-65 6-60 (121)
112 2rig_A Interferon-gamma; cytok 57.5 11 0.00038 34.7 4.6 55 9-65 6-60 (144)
113 3s4w_B Protein FACD2, fanconi 56.7 29 0.001 41.9 9.3 52 66-119 155-206 (1323)
114 4ffb_C Protein STU2; tubulin f 55.7 1.4E+02 0.0048 28.3 13.9 63 250-312 153-216 (278)
115 4ady_A RPN2, 26S proteasome re 54.5 14 0.00046 43.4 5.9 104 29-139 574-681 (963)
116 1fyh_A Interferon-gamma; cytok 52.8 19 0.00064 35.9 5.7 85 9-95 7-117 (258)
117 1wj7_A Hypothetical protein (R 52.0 17 0.00058 31.7 4.7 34 439-479 58-92 (104)
118 1ho8_A Vacuolar ATP synthase s 48.6 12 0.00041 40.5 3.9 58 43-100 417-479 (480)
119 1t06_A Hypothetical protein; s 45.9 73 0.0025 30.6 8.8 81 55-139 99-185 (235)
120 1lrv_A LRV, leucine-rich repea 42.3 11 0.00038 36.8 2.3 84 40-165 154-238 (244)
121 3oc3_A Helicase MOT1, MOT1; re 41.7 24 0.00081 39.7 4.9 90 42-135 273-362 (800)
122 2of3_A ZYG-9; multifunctional 41.0 18 0.00063 36.0 3.7 60 34-97 169-236 (266)
123 1fyh_A Interferon-gamma; cytok 38.1 26 0.0009 34.9 4.2 59 5-65 127-185 (258)
124 2vso_E Eukaryotic initiation f 36.3 1.6E+02 0.0054 29.0 9.7 159 187-357 33-227 (284)
125 3a6p_A Exportin-5; exportin-5, 36.2 1.4E+02 0.0048 35.2 10.8 99 34-132 531-655 (1204)
126 3hjl_A Flagellar motor switch 35.6 1.8E+02 0.0063 29.6 10.2 149 16-167 63-240 (329)
127 2of3_A ZYG-9; multifunctional 33.1 3.3E+02 0.011 26.8 11.4 121 43-170 99-233 (266)
128 3qml_C Protein SLS1, nucleotid 32.6 4.2E+02 0.014 27.1 13.8 175 79-264 81-299 (315)
129 2ozb_B U4/U6 small nuclear rib 31.9 2.1E+02 0.0071 28.4 9.6 39 29-67 12-54 (260)
130 3u5c_h Suppressor protein STM1 31.4 10 0.00034 38.3 0.0 12 526-537 237-248 (273)
131 3a6p_A Exportin-5; exportin-5, 30.8 3E+02 0.01 32.5 12.3 54 63-116 524-583 (1204)
132 4fu3_A Regulation of nuclear P 29.5 22 0.00074 31.0 1.8 50 66-120 5-54 (135)
133 3lay_A Zinc resistance-associa 29.3 16 0.00053 34.5 0.9 15 417-431 103-117 (175)
134 3d9j_A RNA-binding protein 16; 28.2 1.5E+02 0.0051 26.5 7.2 96 69-169 6-115 (145)
135 3fh3_A Putative ECF-type sigma 27.9 1.6E+02 0.0054 27.4 7.3 103 189-306 24-150 (158)
136 2knz_A Ubiquilin-4; cytoplasm, 27.6 25 0.00086 26.5 1.7 22 440-461 31-53 (53)
137 3k62_A FEM-3 mRNA-binding fact 26.1 2.4E+02 0.0081 29.4 9.4 205 92-328 31-261 (412)
138 1sz9_A PCF11 protein; RNA poly 25.4 1.8E+02 0.006 26.1 7.2 82 85-170 23-111 (144)
139 3fx7_A Putative uncharacterize 24.8 89 0.003 26.7 4.7 33 382-414 49-81 (94)
140 3clj_A Protein NRD1; CTD-inter 24.6 2.3E+02 0.008 26.0 7.9 108 67-182 7-140 (157)
141 1xi4_A Clathrin heavy chain; a 24.2 6.3E+02 0.022 31.4 13.4 99 236-350 617-738 (1630)
142 2ful_A EIF-5, eukaryotic trans 23.8 80 0.0027 29.4 4.7 73 83-155 84-164 (177)
143 2lhb_A Hemoglobin V (cyano Met 23.7 3.2E+02 0.011 23.6 8.6 21 47-67 30-50 (149)
144 4gmo_A Putative uncharacterize 23.6 1.2E+02 0.0041 33.4 6.8 65 66-131 32-102 (684)
145 2pk2_A Cyclin-T1, protein TAT; 23.0 18 0.0006 37.3 0.0 11 160-170 37-47 (358)
146 1paq_A Translation initiation 21.1 1.9E+02 0.0065 26.9 6.7 98 47-157 84-186 (189)
147 3lb2_A Dehaloperoxidase A; glo 20.9 4.1E+02 0.014 23.2 8.6 96 34-135 2-110 (137)
No 1
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=100.00 E-value=3.2e-144 Score=1151.17 Aligned_cols=444 Identities=36% Similarity=0.596 Sum_probs=406.9
Q ss_pred hHHHHHHHHHhhhhhhcccc-ccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHH
Q 008918 8 AKQIEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRV 86 (549)
Q Consensus 8 ~~~ie~LY~~~~~L~~akd~-~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~ 86 (549)
.++||+||++||||+||+|+ ++|+++|++||+++||++|+|+|||||||||||+||+|+++|||||+|||||+|++||+
T Consensus 4 ~~~ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~ 83 (507)
T 3u0r_A 4 MPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRR 83 (507)
T ss_dssp -CCHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred cchHHHHHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHH
Confidence 34699999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHH
Q 008918 87 QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (549)
Q Consensus 87 qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~ 166 (549)
||||+||.|||+ +|++||||||+||||+||++|+++|+|||++||++||++||++||+||. .+||.+|||+|+
T Consensus 84 qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~-----~~~e~~Rer~lk 156 (507)
T 3u0r_A 84 QAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAIK 156 (507)
T ss_dssp HHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----HSCHHHHHHHHH
T ss_pred HHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc-----ccchHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999 678999999999
Q ss_pred HHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCC
Q 008918 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 246 (549)
Q Consensus 167 Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~ 246 (549)
||++||++++.+++ ++|+|++|+++|+|+|+|||++||++||+||++|++|++ +.|| |+||+++.+||+|+.+|+
T Consensus 157 Fi~~kl~~l~~~~l--~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t--~~g~-qeLv~ii~eQa~L~~~f~ 231 (507)
T 3u0r_A 157 FLSTKLKTLPDEVL--TKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQT--VSGR-QQLVELVAEQADLEQTFN 231 (507)
T ss_dssp HHHHHGGGSCTTTS--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSS--HHHH-HHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHhhcchhhc--cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccC--chHH-HHHHHHHHHHHhccCCCC
Confidence 99999999999999 799999999999999999999999999999999999985 6677 999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChh-----hhhhHHHHHHHhCCCCC-hhhhhhhHH
Q 008918 247 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEE-----RKLDLLKALAEISPYTT-PQDSRQILP 320 (549)
Q Consensus 247 ~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~-----~kl~lLK~lAE~s~~~~-~~da~~~l~ 320 (549)
++|+|+|||+|+|+++|+||||++++|++||+|||++|||+|++|++. .||++||+||||||||+ .++++++++
T Consensus 232 ~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~ 311 (507)
T 3u0r_A 232 PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR 311 (507)
T ss_dssp SSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH
Confidence 999999999999999999999999999999999999999999999763 89999999999999999 677999999
Q ss_pred HHHHHh-hhcCCCCC----------CCCccchHHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHH
Q 008918 321 SVAVLL-KYMPLRKT----------GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKD 389 (549)
Q Consensus 321 ~i~~~L-~ymP~~~~----------~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kd 389 (549)
+||++| +|||.||+ ++|+|||||||||||+||+||+|+|+|+.. +|++++|||
T Consensus 312 ~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e----------------~~~~~~lkd 375 (507)
T 3u0r_A 312 KLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA----------------KLNAEKLKD 375 (507)
T ss_dssp HHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC----------------C--CCTTHH
T ss_pred HHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc----------------cccHHHHHH
Confidence 999999 99999996 358999999999999999999999999843 256899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCccc
Q 008918 390 FTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVN 469 (549)
Q Consensus 390 F~~RLqyla~~~q~yikkL~~~l~~~~K~~~~~k~denk~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~it 469 (549)
||.|||||+|++|+|||||+++|++ |+++++|+||||+|| +|||||+||++||++|||+||+|++ +||
T Consensus 376 fr~RLqy~ar~~q~yikkL~~~~~~--K~~~~~kteenk~kv--------~alkt~~NI~~likdlfh~pPsFk~--~v~ 443 (507)
T 3u0r_A 376 FKIRLQYFARGLQVYIRQLRLALQG--KTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSYKS--TVT 443 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--CCTTGGGSHHHHHHH--------HHHHHHHHHHHHHHHCC--CCCCCC--CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--cchhhhcchHHHHHH--------HHHHHHhhHHHHHHHHhcCCCCcee--eee
Confidence 9999999999999999999999987 999999999999998 7999999999999999999999998 999
Q ss_pred ccccccCCCCCCCCcccCCCCCCC-CCCCCC
Q 008918 470 LSWKEATKPSVPSTTTASGGKRPA-SINGSG 499 (549)
Q Consensus 470 lSW~~~~k~~~~~~~~~~~~~r~~-~~~g~~ 499 (549)
+||++++| ..+|||++ ..+|++
T Consensus 444 lSWk~~~~--------~~~~kr~~~~~~~~~ 466 (507)
T 3u0r_A 444 LSWKPVQK--------VEIGQKRASEDTTSG 466 (507)
T ss_dssp CTTSCC-------------------------
T ss_pred eeeecccc--------cccCCCCCCccCCCC
Confidence 99998764 34688887 445544
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.21 E-value=0.00044 Score=75.10 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=110.4
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHH
Q 008918 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (549)
Q Consensus 31 ~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDV 109 (549)
...|-.++.... .+...||++.-.+..|++.-|++.--++|++..-+.|.++.||..|++.|..++ .++.+.-+...
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~ 125 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEP 125 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHH
Confidence 456777888776 779999999999999999999999999999999999999999999999999997 67888888998
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchHHH----HHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKAS----LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~d~k~t----L~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
|.++|.+.++..+..+=.||..+++.+|... +-..+.++.. +.+..||.-++.-|..
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~----d~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA----DSNPMVVANAVAALSE 186 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS----CSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhC----CCChhHHHHHHHHHHH
Confidence 9999999999999999999999998877532 2233444442 3445788888777665
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.81 E-value=0.0065 Score=67.97 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=105.5
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc---------hHHHHHHhhhhccccchhHHHHHhhhcccccccC
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL---------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT 99 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L---------~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~ 99 (549)
-.+....++.... ++...+..|...+.+.++.+|+. .+..+..++.++.|.++.||..|++.|-.++...
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 3445566666666 67889999999999999999877 3557888889999999999999999999998655
Q ss_pred cc----chhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH-------HHHHHHHHhhhcCCCCCChHHHHHHHHHHH
Q 008918 100 PE----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (549)
Q Consensus 100 ~e----~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k-------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl 168 (549)
++ ++..+...|.++++++++..+..+-.+|..+.+..|+ ..+..++..+. +.++.+|..++.|+
T Consensus 206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-----~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-----DQDENVALEACEFW 280 (852)
T ss_dssp CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-----CSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-----CCcHHHHHHHHHHH
Confidence 43 3456777788888889999999999999999987764 23333333333 45678999999998
Q ss_pred Hh
Q 008918 169 RD 170 (549)
Q Consensus 169 ~~ 170 (549)
..
T Consensus 281 ~~ 282 (852)
T 4fdd_A 281 LT 282 (852)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.81 E-value=0.00036 Score=78.07 Aligned_cols=284 Identities=14% Similarity=0.133 Sum_probs=158.5
Q ss_pred HHHHhc-CCHHHHHHHhhhhHHhhcc-CccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc---------hhh
Q 008918 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY---------LSK 105 (549)
Q Consensus 37 Il~~~k-g~~k~K~LaaQfI~kffk~-FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~---------~~r 105 (549)
++.+.. .++.++..+++.|...+++ ||+--.+.+..++.++.+.++.+|..|+..|-.+|++.++. +..
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~ 174 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 174 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence 333333 6788999999999998876 56666778999999999999999999999999999877665 344
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH-------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhh
Q 008918 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAE 178 (549)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k-------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e 178 (549)
+...|.++|+++++..+..+-++|..+++..+. ..+..++..+. ++++.+|..++.-|..=+ ...++
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-----d~~~~vr~~a~~~L~~l~-~~~~~ 248 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-----DEEPEVRKNVCRALVMLL-EVRMD 248 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHH-HHCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHH-HhCHH
Confidence 666777888888888888888899877765443 45566666554 456778887776654322 22222
Q ss_pred hcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccc---cCCCCchhHHHHHHHHHHHhhhc--------cccC--
Q 008918 179 LLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSL---FGEKAPTERMKELIGIIEGQADL--------DAQF-- 245 (549)
Q Consensus 179 ~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~---~~t~~~~gr~qeLv~~i~eqa~L--------d~~f-- 245 (549)
.+.+ -++ .++..+.++++|....=-...++++..+-- .....+ ..+..++..+...... ..+.
T Consensus 249 ~~~~--~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~-~~~~~l~p~ll~~l~~~e~d~~~~~~d~~e 324 (852)
T 4fdd_A 249 RLLP--HMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV-RHLPKLIPVLVNGMKYSDIDIILLKGDVEG 324 (852)
T ss_dssp HHGG--GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT-TTHHHHHHHHHHHTSCCHHHHHHHHC----
T ss_pred HHHH--HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHcCCcHhHHHHhcCCccc
Confidence 3322 222 355566666766542211222333333221 000000 1124566555443200 0110
Q ss_pred CCCChHH--HHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHH
Q 008918 246 NVSDADH--IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVA 323 (549)
Q Consensus 246 ~~sD~e~--idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~ 323 (549)
+..|.+. --.+..+.-.++..++...+ ...+..+...+...+.+-....|..-+..|..++..|+. .....++.++
T Consensus 325 d~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l 402 (852)
T 4fdd_A 325 GSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELI 402 (852)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHH
Confidence 1111000 00111222223332222111 122333333333333332335677788889999888764 3334667777
Q ss_pred HHh-hhcCCC
Q 008918 324 VLL-KYMPLR 332 (549)
Q Consensus 324 ~~L-~ymP~~ 332 (549)
..| ..+-++
T Consensus 403 ~~l~~~l~d~ 412 (852)
T 4fdd_A 403 PHLIQCLSDK 412 (852)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 777 666443
No 5
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.81 E-value=0.0011 Score=72.78 Aligned_cols=133 Identities=8% Similarity=0.031 Sum_probs=103.2
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHH
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~Q 112 (549)
|-.++.... .+-..|||+--++..|++.=|++.--++|++..-+.|.++.||-.|++.|..++. ++.+.-+...|.+
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~~l~~~l~~ 149 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMCRDLAGEVEK 149 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHH
Confidence 444444444 6788999999999999999999999999999999999999999999999999984 5778788999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 113 LLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+|.+.++..+..+-.||..+++.+|.. +..++..+..- -.+.+..|+.-++..|..
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~p~~-v~~~~~~l~~l-L~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKVPEL-MEMFLPATKNL-LNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHCGGG-GGGGGGGTTTS-TTCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHChHH-HHHHHHHHHHH-hCCCCHhHHHHHHHHHHH
Confidence 999999999999999999999988862 33334333211 012334566666555543
No 6
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.77 E-value=0.0025 Score=70.23 Aligned_cols=283 Identities=11% Similarity=0.139 Sum_probs=155.9
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhc--cccchhHHHHHhhhcccccccCccchh--hHHHHHHHHHhhch
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLI--EEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEE 118 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLc--EDed~~IR~qAIk~Lp~lck~~~e~~~--riaDVL~QLLqsdd 118 (549)
+++-..-||-.+++..- -|++.+..+..+..++ .|.++-||+.|+=.+..+++-+|+.++ ...+.|.++|.+.+
T Consensus 123 ~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVG--SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH 200 (621)
T ss_dssp CCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC
Confidence 44555555555555552 3666666666667777 888999999999999999988899888 89999999998888
Q ss_pred hHHHHHHHHHHHHHHhhchHH---H---HHHHHHhhhcC-CCC-CC-------hHHHHHHHHHHHHhhcccchhhhcCCh
Q 008918 119 IVERDAVHKALMSLLRQDVKA---S---LTALFKHIGSV-DEP-ST-------DEFIREKVLSFIRDKVFPLKAELLKPQ 183 (549)
Q Consensus 119 ~~E~~~v~~aL~sllk~d~k~---t---L~~lf~qI~~~-~e~-~~-------eE~vREr~l~Fl~~kl~~l~~e~~~~~ 183 (549)
+..+.++-.+|.++...+|.. . +-.++.++... +-+ .+ ++-++-++|+++..-. +. ..
T Consensus 201 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~-~~------~d 273 (621)
T 2vgl_A 201 LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP-PP------ED 273 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS-SC------SS
T ss_pred ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC-CC------CC
Confidence 888888888888888877753 1 22233344322 111 11 4678888888876422 11 12
Q ss_pred HHHHHHHHHHHHHhccc---cc--------HHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHH
Q 008918 184 EEMERHITDLIKKSLED---VT--------GAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 252 (549)
Q Consensus 184 eE~Ee~i~~~ikKvL~d---VT--------~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~ 252 (549)
.+..+.+.+.+..+++- .+ ...-..+++..+.+-.+. ..+. -++..+..+. ..+..+|++.
T Consensus 274 ~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~-~~~~~~~~L~------~~L~~~~~ni 345 (621)
T 2vgl_A 274 PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPN-LLVRACNQLG------QFLQHRETNL 345 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHH-HHHHHHHHHH------HHSSCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHH------HHhcCCCcch
Confidence 35555555555554421 11 001112222222211111 1211 1122222222 2223344421
Q ss_pred HHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCC-CCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcC
Q 008918 253 IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFD-KLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMP 330 (549)
Q Consensus 253 idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~-~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP 330 (549)
|++. +. ++-.+....++..++.-....+++.+. +=+...|..-|.+|..++ ++. .+..|...| .|+.
T Consensus 346 --ry~a-L~-~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~----Nv~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 346 --RYLA-LE-SMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRS----NAQQIVAEMLSYLE 414 (621)
T ss_dssp --HHHH-HH-HHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHH----HHHHHHHHHHHHHH
T ss_pred --HHHH-HH-HHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---Chh----hHHHHHHHHHHHHH
Confidence 1111 11 111111111223444444556666666 555566777777777774 333 355566666 7775
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008918 331 LRKTGGEEMNFTYVECLLYTFHHLAHKAPN 360 (549)
Q Consensus 331 ~~~~~~~~l~fS~vEcLLyafh~L~~K~P~ 360 (549)
. .+..+.+-+.-+.+.+|.|+|.
T Consensus 415 ~-------~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 415 T-------ADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp H-------CCHHHHHHHHHHHHHHHHHHCS
T ss_pred h-------cCHHHHHHHHHHHHHHHHhcCC
Confidence 3 2456677777788888877653
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.76 E-value=0.0012 Score=69.02 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=106.7
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc--hHHHHHHhhhhccccchhHHHHHhhhccccccc--CccchhhHHH
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKIVD 108 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~--~~e~~~riaD 108 (549)
...++...+ ++.+....|++-+......++.- .++.+..+.+.+ |++..||..+.+.|..|+.. .++|...+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 455666666 77888888989998887766532 345566666766 77889999999999999853 5678889999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHhhchHHH----HHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChH
Q 008918 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKAS----LTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQE 184 (549)
Q Consensus 109 VL~QLLqsdd~~E~~~v~~aL~sllk~d~k~t----L~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~e 184 (549)
+|.+++.++++..+..+-.+|..+....|... +-.++..+.. +++..+|+-++..+..-...+ ++
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~----~~~~~~R~~a~~~l~~~~~~~-------~~ 159 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG----GDWFTSRTSACGLFSVCYPRV-------SS 159 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT----CSSHHHHHHHGGGHHHHTTTS-------CH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhc-------CH
Confidence 99999999999999999999999998766543 3334444442 334556776665444311111 12
Q ss_pred HHHHHHHHHHHHhccccc
Q 008918 185 EMERHITDLIKKSLEDVT 202 (549)
Q Consensus 185 E~Ee~i~~~ikKvL~dVT 202 (549)
.....++..+...++|-+
T Consensus 160 ~~~~~l~~~l~~l~~d~~ 177 (588)
T 1b3u_A 160 AVKAELRQYFRNLCSDDT 177 (588)
T ss_dssp HHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 334445555555555543
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.70 E-value=0.0023 Score=66.81 Aligned_cols=251 Identities=13% Similarity=0.125 Sum_probs=138.0
Q ss_pred HHHHHhc-CCHHHHHHHhhhhHHhhccCcc------chHHHHHHhhhhccccchhHHHHHhhhccccccc--CccchhhH
Q 008918 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPD------LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKI 106 (549)
Q Consensus 36 ~Il~~~k-g~~k~K~LaaQfI~kffk~FP~------L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~--~~e~~~ri 106 (549)
.++...+ .++.+++-|++.++++.+.++. ..+..+..+..++.|.+..||..|+..|..+|.. .....+.+
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 364 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 3444444 6678888888888888888764 3566777888888888899999999998888742 11234567
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHhhch-----HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcC
Q 008918 107 VDILVQLLAAEEIVERDAVHKALMSLLRQDV-----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLK 181 (549)
Q Consensus 107 aDVL~QLLqsdd~~E~~~v~~aL~sllk~d~-----k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~ 181 (549)
..+|.++|.++++..+..+-.+|..+...-. ...+..|...+. +.+..+|..++..|..=...++.+.+
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~- 438 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE-----DAKWRVRLAIIEYMPLLAGQLGVEFF- 438 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHHCGGGC-
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHcCHHHH-
Confidence 7888888888877778777777777776432 223334443332 33446777776665542222332222
Q ss_pred ChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhh-ccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHH
Q 008918 182 PQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS-LSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCL 260 (549)
Q Consensus 182 ~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~-l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl 260 (549)
...++..+.+.|.|-...=-..-...+.. ...++ +......++..+.. + +...+...-...+.|+
T Consensus 439 -----~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~---~---~~~~~~~~R~~a~~~l 504 (588)
T 1b3u_A 439 -----DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG---KEWAHATIIPKVLA---M---SGDPNYLHRMTTLFCI 504 (588)
T ss_dssp -----CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---HHHHHHHTHHHHHH---T---TTCSCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC---chhHHHHHHHHHHH---H---hhCCCHHHHHHHHHHH
Confidence 23456666666766532111111111111 11121 00011233333332 1 1112222222334444
Q ss_pred HHhhhhhccCCChhhHHHHHHhhhccc----CCCCChhhhhhHHHHHHHhCCCCChhh
Q 008918 261 YMALPFFLRGASGSKFLNYLNKHIIPV----FDKLPEERKLDLLKALAEISPYTTPQD 314 (549)
Q Consensus 261 ~~Alp~fs~~v~st~f~~y~~~~vlP~----l~~l~e~~kl~lLK~lAE~s~~~~~~d 314 (549)
......+.. .. +...++|. +++=..+.|...++.|..++...+...
T Consensus 505 ~~l~~~~~~----~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 505 NVLSEVCGQ----DI----TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHHHHHHHH----HH----HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHhcCH----HH----HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 333333321 22 33455553 333334678899999999988776544
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.68 E-value=0.0096 Score=60.15 Aligned_cols=295 Identities=11% Similarity=0.060 Sum_probs=167.5
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhc--cCccchH-----HHHHHhhhhcccc-chhHHHHHhhhcccccccCccchh
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFK--FFPDLSS-----RAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYLS 104 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk--~FP~L~e-----~Ai~a~lDLcEDe-d~~IR~qAIk~Lp~lck~~~e~~~ 104 (549)
...++...+ +++.++..|++.+.+... .-|.... .++..++.++.++ ++.||..|...|..+|..++++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 445555554 778899999999999865 3344322 6889999999988 899999999999999987776643
Q ss_pred -----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhh
Q 008918 105 -----KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK 171 (549)
Q Consensus 105 -----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~k 171 (549)
.+...|+++|.++++..+..+-.+|..+...++. +.+..|...+.. ..+..+|+.++..|..=
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK----QNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS----CCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC----CCCHHHHHHHHHHHHHH
Confidence 3678899999999998888888999888876542 345555555541 24567888877766542
Q ss_pred cccc-hhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHH-----HHHHHHHhhhccccC
Q 008918 172 VFPL-KAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-----LIGIIEGQADLDAQF 245 (549)
Q Consensus 172 l~~l-~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qe-----Lv~~i~eqa~Ld~~f 245 (549)
...- +.. ......-++..+.+.|.+-...-.......|..+-... + ...+. ++..+.. .+
T Consensus 178 ~~~~~~~~----~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~---~-~~~~~~~~~~~i~~L~~------ll 243 (450)
T 2jdq_A 178 CRGKSPPP----EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP---N-DKIQAVIDAGVCRRLVE------LL 243 (450)
T ss_dssp HCCSSSCC----CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS---H-HHHHHHHHTTTHHHHHH------HT
T ss_pred hCCCCCCC----CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC---c-HHHHHHHHcCcHHHHHH------HH
Confidence 2111 000 00111223444445555433222223344444443321 1 11011 1111111 12
Q ss_pred CCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHH-hhhccc----CCCCChhhhhhHHHHHHHhCCCCChhh----hh
Q 008918 246 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIPV----FDKLPEERKLDLLKALAEISPYTTPQD----SR 316 (549)
Q Consensus 246 ~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~-~~vlP~----l~~l~e~~kl~lLK~lAE~s~~~~~~d----a~ 316 (549)
...|++.....+. ++-.++.+... ....+. ..++|. +..=....+...+..|..++..+.... ..
T Consensus 244 ~~~~~~v~~~a~~----~L~~l~~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 244 MHNDYKVVSPALR----AVGNIVTGDDI--QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp TCSCHHHHHHHHH----HHHHHTTSCHH--HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCchhHHHHHHH----HHHHHhhCChH--HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 2234433333333 33333333221 111111 234443 333234567788888888887543221 13
Q ss_pred hhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHHHHhhhc-Cchhhh
Q 008918 317 QILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTFHHLAHK-APNATN 363 (549)
Q Consensus 317 ~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K-~P~~l~ 363 (549)
..+|.+.+.| .- +....+...+++.+|+.. .|+...
T Consensus 318 ~~l~~L~~~l~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 318 NIFPALISILQTA-----------EFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp THHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4566666666 31 234667778888888876 555443
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.66 E-value=0.0051 Score=66.77 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=102.3
Q ss_pred cCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchh--hHHHHHHHHHhhchh
Q 008918 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEEI 119 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~--riaDVL~QLLqsdd~ 119 (549)
..++-.+.+|-..+.+.. -|++.+..+..+..++.|.++.||+.|+..|..+++.+|+.+. .+.+.|.++|.+.++
T Consensus 97 ~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~ 174 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNP 174 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCH
T ss_pred CCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCCh
Confidence 367888999999998885 7889999999999999999999999999999999999999887 488999999999999
Q ss_pred HHHHHHHHHHHHHHhhch--------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 120 VERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 120 ~E~~~v~~aL~sllk~d~--------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
..+..+=.+|..+...+| ...+..|+..+. ..++-++-+++.++.
T Consensus 175 ~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-----~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 175 MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-----ECTEWGQIFILDCLS 227 (591)
T ss_dssp HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-----CCCchHHHHHHHHHH
Confidence 888888888888887776 246788888876 345666777777664
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.66 E-value=0.0063 Score=56.29 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=103.1
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhHHhhccCccchH-----HHHHHhhhhccccchhHHHHHhhhcccccccCccchhh---
Q 008918 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--- 105 (549)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r--- 105 (549)
..++...+ +++..+.-|+..|.......|+... .++..++.++.++++.||.+|+..|-.+|.+++++...
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34455444 6688888999999998888875533 58999999999999999999999999999887776443
Q ss_pred --HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 106 --IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 106 --iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+.+.|.++|.++++..+..+-.+|..+...++. +.+..|+..+. ++++.+|+.++..|..
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-----~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALAN 154 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 688999999999988888888898888865544 45677776665 5567788888777664
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.61 E-value=0.006 Score=61.62 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=102.2
Q ss_pred hhHHHHHHHhc-C-CHHHHHHHhhhhHHhhccCccch-----HHHHHHhhhhccccchhHHHHHhhhcccccccCccchh
Q 008918 32 KDYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (549)
Q Consensus 32 ~~Y~~Il~~~k-g-~~k~K~LaaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ 104 (549)
.....++...+ + ++..+.-|+..+.....+-|+.. ..++..++.++.++++.||.+|+..|..+|.+++++..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 34555666555 5 68999999999999988666543 46899999999999999999999999999988766533
Q ss_pred -----hHHHHHHHHHhh-chhHHHHHHHHHHHHHHhhc-h-------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 105 -----KIVDILVQLLAA-EEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 105 -----riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~d-~-------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
.+...|+++|++ .+...+..+-.+|..+...+ | .+.+..|+..+. ++++.+|+.+...|.
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----VSDTDVLADACWALS 217 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----CCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHH
Confidence 367889999996 57778888888888888654 3 456777777765 456778876665554
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.60 E-value=0.0087 Score=60.38 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=87.3
Q ss_pred HHHHhc-CCHHHHHHHhhhhHHhhcc-Ccc-chHHHHHHhhhhcccc--chhHHHHHhhhcccccccC-----ccchhhH
Q 008918 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (549)
Q Consensus 37 Il~~~k-g~~k~K~LaaQfI~kffk~-FP~-L~e~Ai~a~lDLcEDe--d~~IR~qAIk~Lp~lck~~-----~e~~~ri 106 (549)
++.+.. .+... +-+++.|+..+++ ||+ .-.+.+..++..+.++ |+.+|..|+..|-.+|++. ..|++.+
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHH
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHH
Confidence 444444 45556 6688888888776 574 4567888888999988 9999999999999999754 3456678
Q ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHHhh-----ch---HH-HHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQ-----DV---KA-SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 107 aDVL~QLLqsd--d~~E~~~v~~aL~sllk~-----d~---k~-tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
...|.++|+++ ++..+..+-++|.+++.. +. .. .+..++..+. ++++.+|.-++..+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Confidence 88888999887 567777777788775432 11 11 1333333222 4567788877766554
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.60 E-value=0.0067 Score=66.61 Aligned_cols=271 Identities=7% Similarity=0.029 Sum_probs=145.1
Q ss_pred CHHHHHHHhhhhHHhhccCccc------hHHHHHHhhhhccccchhHHHHHhhhcccccccCccc----hh-hHHHHHHH
Q 008918 44 SLKAKQLAAQLIPRFFKFFPDL------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LS-KIVDILVQ 112 (549)
Q Consensus 44 ~~k~K~LaaQfI~kffk~FP~L------~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~----~~-riaDVL~Q 112 (549)
+..++..|.+-+..+...+++. .+..+..+..++.|++..+|..|++.|..++...+++ +. .+...+..
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~ 273 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA 273 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999888876555432 2346788888899999999999999999998766654 44 56666667
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhch------------------------HHHHHHHHHhhhcCCCCCChH--HHHHHHHH
Q 008918 113 LLAAEEIVERDAVHKALMSLLRQDV------------------------KASLTALFKHIGSVDEPSTDE--FIREKVLS 166 (549)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~d~------------------------k~tL~~lf~qI~~~~e~~~eE--~vREr~l~ 166 (549)
.+.+++...+..+-..+.++...-+ ...+..++..+...++..+|+ .+|..+..
T Consensus 274 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~ 353 (861)
T 2bpt_A 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence 7777777666666666666655421 233445555554332222122 57766665
Q ss_pred HHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCch---hHHHHHHHHHHHhhhccc
Q 008918 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT---ERMKELIGIIEGQADLDA 243 (549)
Q Consensus 167 Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~---gr~qeLv~~i~eqa~Ld~ 243 (549)
.|..=...++ +++-..++..+...|++-....-..-...+.++-..- .+. ..+.+++..+... |.
T Consensus 354 ~L~~l~~~~~-------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~--~~~~~~~~l~~il~~l~~~--l~- 421 (861)
T 2bpt_A 354 CLQLFAQNCG-------NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP--DKVQRTYYVHQALPSILNL--MN- 421 (861)
T ss_dssp HHHHHHHHHG-------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS--CHHHHHHHHHHHHHHHHHG--GG-
T ss_pred HHHHHHHHcc-------HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHH--cC-
Confidence 5543221222 2333456666666776554443333333444433211 111 1112233333321 21
Q ss_pred cCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCC---hhhhhhhHH
Q 008918 244 QFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT---PQDSRQILP 320 (549)
Q Consensus 244 ~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~---~~da~~~l~ 320 (549)
..++..-...+.|+.+...++.......+++.-+...++..+++= ...+......|..++..|+ .......++
T Consensus 422 ---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~ 497 (861)
T 2bpt_A 422 ---DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYP 497 (861)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 123333344444555444444443333445544444455445442 3334444444444444333 233445667
Q ss_pred HHHHHh-hhcC
Q 008918 321 SVAVLL-KYMP 330 (549)
Q Consensus 321 ~i~~~L-~ymP 330 (549)
.|++.| ..+-
T Consensus 498 ~il~~L~~~l~ 508 (861)
T 2bpt_A 498 ALVDGLIGAAN 508 (861)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 777666 6664
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.57 E-value=0.0068 Score=61.19 Aligned_cols=294 Identities=10% Similarity=0.042 Sum_probs=157.5
Q ss_pred HHHHhcCCHHHHHHHhhhhHHhhccC------------ccc----hHHHHHHhhhhccccchhHHHHHhhhccccccc-C
Q 008918 37 IIEAAKTSLKAKQLAAQLIPRFFKFF------------PDL----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-T 99 (549)
Q Consensus 37 Il~~~kg~~k~K~LaaQfI~kffk~F------------P~L----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~-~ 99 (549)
||.....+..++++|+..+.++.++. +.+ .+..-+.++.++.++++.| .++...|..+++. .
T Consensus 43 il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~ 121 (462)
T 1ibr_B 43 VLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEI 121 (462)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHG
T ss_pred HHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhc
Confidence 44432247899999999999886542 333 3334466788888888889 8888888888643 2
Q ss_pred cc-chhhHHHHHHHHHhhc--hhHHHHHHHHHHHHHHhhc-h------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 100 PE-YLSKIVDILVQLLAAE--EIVERDAVHKALMSLLRQD-V------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 100 ~e-~~~riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~d-~------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
|+ ..+.+...|.+.++++ ++..+..+=.+|..+.+.- + -..+-..|.+...+.+ .+..||..+++-+.
T Consensus 122 ~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~ 199 (462)
T 1ibr_B 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE--PSNNVKLAATNALL 199 (462)
T ss_dssp GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC--CCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Confidence 32 4478899999999998 8888888878888777632 2 1223333444442211 14678988887665
Q ss_pred hhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHH----HHHHHhhccc-cCCCCchhHHH-HHHHHHHHhhhccc
Q 008918 170 DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRM----FMDFLKSLSL-FGEKAPTERMK-ELIGIIEGQADLDA 243 (549)
Q Consensus 170 ~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l----~m~iL~~l~~-~~t~~~~gr~q-eLv~~i~eqa~Ld~ 243 (549)
.=+.-++...- ......+++..+...+.+....-... |..+....+. +.. .+. .++.++....
T Consensus 200 ~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-----~~~~~l~~~~~~~~---- 268 (462)
T 1ibr_B 200 NSLEFTKANFD--KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET-----YMGPALFAITIEAM---- 268 (462)
T ss_dssp HHTTTTHHHHT--SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT-----TTTTTHHHHHHHHH----
T ss_pred HHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH----
Confidence 42222221111 11234566776666666554433322 3333332221 211 112 4555544321
Q ss_pred cCCCCChHHHHHHHHHHHHhhhh------hccC---------CChhhHHHHHHhhhccc----CCCCCh-------hhhh
Q 008918 244 QFNVSDADHIDRLISCLYMALPF------FLRG---------ASGSKFLNYLNKHIIPV----FDKLPE-------ERKL 297 (549)
Q Consensus 244 ~f~~sD~e~idRli~cl~~Alp~------fs~~---------v~st~f~~y~~~~vlP~----l~~l~e-------~~kl 297 (549)
...+++.....+.++...... +... .....++..+...++|. +.+.++ ..+.
T Consensus 269 --~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 269 --KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp --HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred --cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH
Confidence 122333323333322222111 1110 11223444344555553 332211 1233
Q ss_pred hHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008918 298 DLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 357 (549)
Q Consensus 298 ~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K 357 (549)
.-...|..++..++ ..+++.++..+ .++-. -++..-++.++++..++..
T Consensus 347 ~a~~~L~~l~~~~~----~~~~~~~~~~l~~~l~~-------~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 347 AAGVCLMLLATCCE----DDIVPHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHHTT----TTHHHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHhcc----HHHHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHhcC
Confidence 33344444444343 25667777777 66642 3688999999999999864
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.56 E-value=0.054 Score=59.42 Aligned_cols=159 Identities=15% Similarity=0.151 Sum_probs=105.4
Q ss_pred HHHHHhc-CCHHHHHHHhhhhHHhhcc-Ccc-chHHHHHHhhhhcccc-chhHHHHHhhhcccccccC-------ccchh
Q 008918 36 GIIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDT-------PEYLS 104 (549)
Q Consensus 36 ~Il~~~k-g~~k~K~LaaQfI~kffk~-FP~-L~e~Ai~a~lDLcEDe-d~~IR~qAIk~Lp~lck~~-------~e~~~ 104 (549)
.++.+.. .++..+.-+++.|...+++ ||. .-.+.+..+++++.++ |+.+|..|++-|-.+|++- ..++.
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 3445444 6688888999999998876 674 5577899999999998 9999999999999998642 24677
Q ss_pred hHHHHHHHHHhhc--hhHHHHHHHHHHHHHHhh---ch------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcc
Q 008918 105 KIVDILVQLLAAE--EIVERDAVHKALMSLLRQ---DV------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (549)
Q Consensus 105 riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~---d~------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~ 173 (549)
.+...|.+.|.++ ++..+.++-++|..++.. +. ...+..|+..+. ++++.+|+.++.-|..=+.
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-----AEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-----CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHH
Confidence 7888888888887 677788888888776432 11 123445554443 4567788877766554222
Q ss_pred cchhhhcCChHHHHHHHHHHHHHhccccc
Q 008918 174 PLKAELLKPQEEMERHITDLIKKSLEDVT 202 (549)
Q Consensus 174 ~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT 202 (549)
..+ ..+ ..-+...|+..+...+.|..
T Consensus 254 ~~~-~~~--~~~l~~~l~~~~~~~~~~~~ 279 (861)
T 2bpt_A 254 KYY-TFM--KPYMEQALYALTIATMKSPN 279 (861)
T ss_dssp HHG-GGC--HHHHHHTHHHHHHHHTTCSS
T ss_pred HHH-HHH--HHHHHHHHHHHHHHHHcCCc
Confidence 222 222 12222244555556666544
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.55 E-value=0.0035 Score=58.79 Aligned_cols=138 Identities=15% Similarity=0.164 Sum_probs=106.8
Q ss_pred ccChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc-----hHHHHHHhhhhccccchhHHHHHhhhcccccccCcc
Q 008918 28 SQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE 101 (549)
Q Consensus 28 ~~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e 101 (549)
+.....|..+....+ +++.++.-|++.+.++....++. ...+|..++.+..++++.||.+|+..|-.+|.++++
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 356667888888777 77889999999998877763332 345788999999999999999999999999988777
Q ss_pred chhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHH
Q 008918 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (549)
Q Consensus 102 ~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl 168 (549)
+... +...|+++|.++++..+..+-.+|..+...++. +.+..|...+. +++..+|+.++..|
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L 162 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWAL 162 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 6544 677899999999888888888888877665443 35666666665 45667888777666
Q ss_pred Hh
Q 008918 169 RD 170 (549)
Q Consensus 169 ~~ 170 (549)
..
T Consensus 163 ~~ 164 (252)
T 4db8_A 163 SN 164 (252)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 18
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.55 E-value=0.0036 Score=57.16 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=103.0
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchH-----HHHHHhhhhccccchhHHHHHhhhcccccccCccch
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~ 103 (549)
....|..+....+ .++..+.-|+..|......-|+... .+|..++.+..++++.||.+|+..|-.+|.+++++.
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3445666666666 7788899999999988877776643 578899999999999999999999999998887765
Q ss_pred hh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 104 SK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 104 ~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
.. +...|+++|.+.++..+..+-.+|..+...++. +.+..|..-+. +++..+|+.++..|..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 44 458999999999988888888888888764443 34556666554 4466778877766653
No 19
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.53 E-value=0.0098 Score=56.46 Aligned_cols=154 Identities=14% Similarity=0.225 Sum_probs=111.8
Q ss_pred CCHHHHHHHhhhhHHhhccCccc----hHHHHHHhhhhcc-ccchhHHHHHhhhcccccccC----ccchhhHHHHHHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDL----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDT----PEYLSKIVDILVQL 113 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L----~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~----~e~~~riaDVL~QL 113 (549)
.+-++++-|+.-|....+..|++ -.+.++++..++. |.++.||..|.+.|..||+.- ..|+..+...|...
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56778888888887777664442 3577899999996 999999999999999998432 25677888888888
Q ss_pred HhhchhHHHHHHHHHHHHHHhh-chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHH
Q 008918 114 LAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITD 192 (549)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~-d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~ 192 (549)
|.+-.+..++++..+|..++.. .....+..|+..+. .....+|+.++.||..-+....++.. ..... ..++.
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-----~~~~~vr~~~l~~l~~~l~~~~~~~~-~~~~l-~~l~p 179 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS-----NKNPSVKSETALFIARALTRTQPTAL-NKKLL-KLLTT 179 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTTCCGGGC-CHHHH-HHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHHHHHcCCCCc-cHHHH-HHHHH
Confidence 8888889999999999999986 44455666666554 34567999999999876655432211 12233 35566
Q ss_pred HHHHhcccccH
Q 008918 193 LIKKSLEDVTG 203 (549)
Q Consensus 193 ~ikKvL~dVT~ 203 (549)
.+.+.|.|-..
T Consensus 180 ~l~~~l~D~~~ 190 (242)
T 2qk2_A 180 SLVKTLNEPDP 190 (242)
T ss_dssp HHHHHHTSSCH
T ss_pred HHHHHhcCCCh
Confidence 66666665543
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.50 E-value=0.0035 Score=58.01 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=105.0
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchH-----HHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r- 105 (549)
....++...+ ++...+..|+..+.....+-|+..+ .++..++.++.++++.||..|+..|-.+|..++++...
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455566656 7799999999999999887787755 57999999999999999999999999999877776543
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH--------HHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~--------tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+...|+++|.++++..+..+-.+|..+...++.. .+..|...+. ++++.+|+.++..|..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALAN 196 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC-----CCCHHHHHHHHHHHHH
Confidence 6788999999999888888888888877655433 5666666665 5567788888877664
No 21
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.49 E-value=0.0089 Score=65.76 Aligned_cols=128 Identities=12% Similarity=0.169 Sum_probs=89.5
Q ss_pred HHHHhc-CCHHHHHHHhhhhHHhhcc-Cc-cchHHHHHHhhhhcccc--chhHHHHHhhhcccccccC-----ccchhhH
Q 008918 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FP-DLSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (549)
Q Consensus 37 Il~~~k-g~~k~K~LaaQfI~kffk~-FP-~L~e~Ai~a~lDLcEDe--d~~IR~qAIk~Lp~lck~~-----~e~~~ri 106 (549)
++.+.. .++.. .-+++.|...+++ || +--.+.+..++.++.++ ++.+|..|++.|..+|+.- ..|++.+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 555444 45566 7788888877664 34 34456788888888988 9999999999999999753 3567778
Q ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHHhhch---------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQDV---------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 107 aDVL~QLLqsd--d~~E~~~v~~aL~sllk~d~---------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
...|.++|..+ ++..+..+=++|..++..-. ...+..++..+. .+++.+|..++.++..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHH
Confidence 88889999887 46677778888887664311 113444444432 4556789888877765
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.48 E-value=0.0057 Score=64.24 Aligned_cols=300 Identities=13% Similarity=0.113 Sum_probs=173.8
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCc-cc-----hHHHHHHhhhhccccc-hhHHHHHhhhcccccccCcc
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP-DL-----SSRAVDAHLDLIEEEE-LGVRVQAIRGLPLFCKDTPE 101 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP-~L-----~e~Ai~a~lDLcEDed-~~IR~qAIk~Lp~lck~~~e 101 (549)
..+....++...+ +++..+..|++.+.+.....+ .. ...+|..++.+..+++ +.||.+|+..|-.+|.++++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3445777777766 778899999999999987665 22 3457889999999887 99999999999999998887
Q ss_pred chhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHH
Q 008918 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (549)
Q Consensus 102 ~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl 168 (549)
+... +...|+++|.++++..+..+-.+|..|...++. +.+..|+..+.. ..+..+++.++..|
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~----~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE----HTKLSMLRNATWTL 227 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT----TCCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc----CCCHHHHHHHHHHH
Confidence 7554 677899999999888888888888888765443 346667776632 34566777666555
Q ss_pred HhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHH-----HHHHHhhhccc
Q 008918 169 RDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELI-----GIIEGQADLDA 243 (549)
Q Consensus 169 ~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv-----~~i~eqa~Ld~ 243 (549)
..=...-+ .+......-++..+.+.|.+-...-.......|..+-.. +..+.+.++ ..+..
T Consensus 228 ~~L~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~v~~Lv~------ 293 (528)
T 4b8j_A 228 SNFCRGKP----QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLVE------ 293 (528)
T ss_dssp HHHHCSSS----CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----CHHHHHHHHHTTCHHHHHH------
T ss_pred HHHHcCCC----CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCHHHHHHH------
Confidence 43111111 112233444555555666654433333334444444432 112212221 11111
Q ss_pred cCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHH-HHHhhhcccCCCC-----ChhhhhhHHHHHHHhCCCCChhhh--
Q 008918 244 QFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN-YLNKHIIPVFDKL-----PEERKLDLLKALAEISPYTTPQDS-- 315 (549)
Q Consensus 244 ~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~-y~~~~vlP~l~~l-----~e~~kl~lLK~lAE~s~~~~~~da-- 315 (549)
.+...+++.....+. ++--++.+.. .... ++...++|.|-.+ ....+...+..|..++.. ++...
T Consensus 294 lL~~~~~~v~~~a~~----~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~ 366 (528)
T 4b8j_A 294 LLLHPSPSVLIPALR----TVGNIVTGDD--AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQA 366 (528)
T ss_dssp HTTCSCHHHHHHHHH----HHHHHTTSCH--HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHH
T ss_pred HHcCCChhHHHHHHH----HHHHHHcCCH--HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHH
Confidence 122233333333332 3333333221 1111 2223445543332 234566666666666653 22221
Q ss_pred ---hhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHHHHhhhc-Cchhhhhc
Q 008918 316 ---RQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTFHHLAHK-APNATNSL 365 (549)
Q Consensus 316 ---~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K-~P~~l~~l 365 (549)
..++|.+.++| .. +....+..++++.+|+.. .|+....+
T Consensus 367 ~~~~~~i~~L~~lL~~~-----------~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 367 VINAGIIGPLVNLLQTA-----------EFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp HHHTTCHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 24567776666 31 345778888999999888 56655444
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.46 E-value=0.015 Score=61.25 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=100.0
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhHHhhccC--ccc----hHHHHHHhhhhcccc-chhHHHHHhhhcccccccCccch
Q 008918 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF--PDL----SSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYL 103 (549)
Q Consensus 32 ~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~F--P~L----~e~Ai~a~lDLcEDe-d~~IR~qAIk~Lp~lck~~~e~~ 103 (549)
.....++...+ +++..+..|++.+.++.... |.. ...++..++.++.++ ++.||..|+..|-.+|.+++++.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45667777666 67889999999999998764 322 346789999999987 89999999999999999877665
Q ss_pred hh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 104 SK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 104 ~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
.. +...|+++|.+.++..+..+-.+|..+...++. +.+..|+..+. ..+..+|..++..|.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-----SNKPSLIRTATWTLS 240 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-----SCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-----cCCHHHHHHHHHHHH
Confidence 43 578999999999998888888888888765432 34555555554 244556665555444
No 24
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.45 E-value=0.0092 Score=65.63 Aligned_cols=295 Identities=9% Similarity=0.006 Sum_probs=149.0
Q ss_pred CHHHHHHHhhhhHHhhccCccch------HHHHHHhhhhccccchhHHHHHhhhcccccccCccc----hh-hHHHHHHH
Q 008918 44 SLKAKQLAAQLIPRFFKFFPDLS------SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LS-KIVDILVQ 112 (549)
Q Consensus 44 ~~k~K~LaaQfI~kffk~FP~L~------e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~----~~-riaDVL~Q 112 (549)
+..++..|.+-+.....++++.- +..+..+..++.|+|..||.+|++.|..++...+++ +. .+.+++.+
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 57888889998888777666431 236777888888999999999999999998766654 44 67777777
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhch----------------------------HHHHHHHHHhhhcCCCC--CChHHHHH
Q 008918 113 LLAAEEIVERDAVHKALMSLLRQDV----------------------------KASLTALFKHIGSVDEP--STDEFIRE 162 (549)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~d~----------------------------k~tL~~lf~qI~~~~e~--~~eE~vRE 162 (549)
.+..+++..+..+-..+.++.+..+ ...+..++..+...++. +++..+|.
T Consensus 267 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~ 346 (876)
T 1qgr_A 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHH
Confidence 7776666555555545555543310 22344455555432221 11224676
Q ss_pred HHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCch---hHHHHHHHHHHHhh
Q 008918 163 KVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT---ERMKELIGIIEGQA 239 (549)
Q Consensus 163 r~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~---gr~qeLv~~i~eqa 239 (549)
-+...|..=...++ +++-..++..+...|.|-....-...+..|..+-..- .|. ..+.+++..+...
T Consensus 347 ~a~~~l~~l~~~~~-------~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~--~~~~~~~~~~~~l~~l~~~- 416 (876)
T 1qgr_A 347 AAGVCLMLLATCCE-------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP--EPSQLKPLVIQAMPTLIEL- 416 (876)
T ss_dssp HHHHHHHHHHHHHG-------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS--CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCc-------HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHH-
Confidence 65555443211112 1233456666666676654433333333444332211 111 1123344444332
Q ss_pred hccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCC--------
Q 008918 240 DLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT-------- 311 (549)
Q Consensus 240 ~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~-------- 311 (549)
| +..++..-...+.++.+....+.......+++.-+...++..+.+ +...+...++.|..++..++
T Consensus 417 -l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 417 -M----KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp -H----TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred -h----CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1 112232223444444443333333222345555555556555555 33345444444444433221
Q ss_pred -----hhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHHHHh
Q 008918 312 -----PQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTFHHL 354 (549)
Q Consensus 312 -----~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh~L 354 (549)
.......++.|+..| ..+-........+.-..+||+-.....+
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 111233455555555 5554332212334444555554444433
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.39 E-value=0.0068 Score=63.95 Aligned_cols=293 Identities=14% Similarity=0.090 Sum_probs=164.9
Q ss_pred HHHHHHHhc-C-CHHHHHHHhhhhHHhhccCccch-----HHHHHHhhhhccccchhHHHHHhhhcccccccCccchh--
Q 008918 34 YEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-- 104 (549)
Q Consensus 34 Y~~Il~~~k-g-~~k~K~LaaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~-- 104 (549)
...++...+ + ++.++..|+..+.....+-|+.. ..++..++.++.+.++.||.+|+..|..||.+++++..
T Consensus 132 i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~ 211 (530)
T 1wa5_B 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211 (530)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHH
Confidence 445555555 3 68889999999998888777654 35688899999999999999999999999988766532
Q ss_pred ---hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc-h-------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcc
Q 008918 105 ---KIVDILVQLLAAEEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (549)
Q Consensus 105 ---riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d-~-------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~ 173 (549)
.+...|+++|.+.++..+..+-.+|..|...+ | .+.+..|+..+. .+++.+|..++..|..=..
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----SMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----CCCHHHHHHHHHHHHHHHS
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-----CCCHHHHHHHHHHHHHHhC
Confidence 36788999999988888888888888888654 3 255666666665 4567788777665543111
Q ss_pred cchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHH-----HHHHHHhhhccccCCCC
Q 008918 174 PLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKEL-----IGIIEGQADLDAQFNVS 248 (549)
Q Consensus 174 ~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeL-----v~~i~eqa~Ld~~f~~s 248 (549)
. ..+.. ..-.+.-++..+-..|.+-...--......|..+-.. .+... +.+ +..+.. .+...
T Consensus 287 ~-~~~~~--~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~-~~~~~~~~l~~L~~------lL~~~ 353 (530)
T 1wa5_B 287 G-PQEAI--QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG---NDLQT-QVVINAGVLPALRL------LLSSP 353 (530)
T ss_dssp S-CHHHH--HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---CHHHH-HHHHHTTHHHHHHH------HTTCS
T ss_pred C-CHHHH--HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC---CHHHH-HHHHHcchHHHHHH------HHcCC
Confidence 1 11111 0011123344455555544322222233344433322 11111 111 112211 12222
Q ss_pred ChHHHHHHHHHHHHhhhhhccCCChhhHHHHHH-hhhcccCCCC----ChhhhhhHHHHHHHhCCCCCh--hhhh-----
Q 008918 249 DADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIPVFDKL----PEERKLDLLKALAEISPYTTP--QDSR----- 316 (549)
Q Consensus 249 D~e~idRli~cl~~Alp~fs~~v~st~f~~y~~-~~vlP~l~~l----~e~~kl~lLK~lAE~s~~~~~--~da~----- 316 (549)
+++.....+ .++.-++.+. ...+.++. ..++|.|-.+ +.+.|...+..|..++..+++ +...
T Consensus 354 ~~~vr~~A~----~aL~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~ 427 (530)
T 1wa5_B 354 KENIKKEAC----WTISNITAGN--TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 427 (530)
T ss_dssp CHHHHHHHH----HHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHT
T ss_pred CHHHHHHHH----HHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHC
Confidence 332222222 2344444322 22333333 4566654433 235566666666666554433 2222
Q ss_pred hhHHHHHHHhhhcCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008918 317 QILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 360 (549)
Q Consensus 317 ~~l~~i~~~L~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~ 360 (549)
..++.+.++| -.+ +-...+..+.++.+|....+.
T Consensus 428 ~~l~~L~~ll---~~~-------~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 428 GCIKPLCDLL---EIA-------DNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp TCHHHHHHHT---TTC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---hCC-------CHHHHHHHHHHHHHHHHhhhh
Confidence 2455555554 211 234677788888888776665
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.38 E-value=0.0017 Score=59.30 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=100.9
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchH-----HHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r- 105 (549)
....++...+ +++.++.-|+..+.....+-|+... .++..+++++.+.++.||..|...|-.+|.+++++...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455666655 7889999999999998877776643 36789999999999999999999999999888777533
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+...|+++|.++++..+..+-.+|..+...++. +.+..|...+. ++++.+|+.+...|.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-----HENEKIQKEAQEALE 205 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 678999999999888888888888888776433 33445544443 456667777776654
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.31 E-value=0.0027 Score=66.78 Aligned_cols=294 Identities=13% Similarity=0.066 Sum_probs=164.5
Q ss_pred HHHHHHHhc-CC-HHHHHHHhhhhHHhhccCccchH-----HHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-
Q 008918 34 YEGIIEAAK-TS-LKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (549)
Q Consensus 34 Y~~Il~~~k-g~-~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r- 105 (549)
...++...+ ++ +..+..|+..+......-|+... .+|..++.++.+.++.||.+|+..|-.||.+++++...
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i 198 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 444555554 44 88999999999998887676544 48889999999999999999999999999887765444
Q ss_pred ----HHHHHHHHH-hhchhHHHHHHHHHHHHHHhhch-------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcc
Q 008918 106 ----IVDILVQLL-AAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (549)
Q Consensus 106 ----iaDVL~QLL-qsdd~~E~~~v~~aL~sllk~d~-------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~ 173 (549)
+...|+++| .+.++..+..+-.+|..|....| .+.+..|...+. .+++.+++.++..|..=.
T Consensus 199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~aL~~l~- 272 (528)
T 4b8j_A 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH-----SNDEEVLTDACWALSYLS- 272 (528)
T ss_dssp HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT-----CCCHHHHHHHHHHHHHHT-
T ss_pred HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHH-
Confidence 456788888 56677778888888888877643 345666666665 556778887766655311
Q ss_pred cchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHH-----HHHHHHhhhccccCCCC
Q 008918 174 PLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKEL-----IGIIEGQADLDAQFNVS 248 (549)
Q Consensus 174 ~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeL-----v~~i~eqa~Ld~~f~~s 248 (549)
.-..+.. ..-.+.-++..+-+.|.+-+..--......|..+-.. .+..+ +.+ +..+... |.. ..
T Consensus 273 ~~~~~~~--~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~-~~~~~~~~l~~L~~l--L~~---~~ 341 (528)
T 4b8j_A 273 DGTNDKI--QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG---DDAQT-QCIIDHQALPCLLSL--LTQ---NL 341 (528)
T ss_dssp SSCHHHH--HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHH-HHHHTTTHHHHHHHH--HHS---CC
T ss_pred cCCHHHH--HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC---CHHHH-HHHHHhhhHHHHHHH--HcC---CC
Confidence 1111110 0001112344555556554432222334444444332 11111 111 1111111 111 11
Q ss_pred ChHHHHHHHHHHHHhhhhhccCCChhhHHHHH-HhhhcccCCCC----ChhhhhhHHHHHHHhCCCCChhhhh-----hh
Q 008918 249 DADHIDRLISCLYMALPFFLRGASGSKFLNYL-NKHIIPVFDKL----PEERKLDLLKALAEISPYTTPQDSR-----QI 318 (549)
Q Consensus 249 D~e~idRli~cl~~Alp~fs~~v~st~f~~y~-~~~vlP~l~~l----~e~~kl~lLK~lAE~s~~~~~~da~-----~~ 318 (549)
+++....... ++--+..+ +...+.++ ...++|.|-.+ +.+.+...+..|+-++...++.... ..
T Consensus 342 ~~~v~~~A~~----~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 415 (528)
T 4b8j_A 342 KKSIKKEACW----TISNITAG--NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 415 (528)
T ss_dssp CHHHHHHHHH----HHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred cHHHHHHHHH----HHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 2322222222 23333332 22333333 33666654443 3356666677777666544443332 34
Q ss_pred HHHHHHHhhhcCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008918 319 LPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 360 (549)
Q Consensus 319 l~~i~~~L~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~ 360 (549)
++.+.++| -.+ +-..++..+.++++|.+..+.
T Consensus 416 i~~L~~lL---~~~-------d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 416 IKPLCDLL---ICP-------DIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHGG---GCS-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 55665555 211 124677888888888877665
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.31 E-value=0.0031 Score=63.60 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=103.5
Q ss_pred HHHHHH-Hhc-CCHHHHHHHhhhhHHhhccCccchH-----HHHHHhhhhccc-cchhHHHHHhhhcccccccCccchhh
Q 008918 34 YEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK 105 (549)
Q Consensus 34 Y~~Il~-~~k-g~~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcED-ed~~IR~qAIk~Lp~lck~~~e~~~r 105 (549)
...++. ..+ +++..+.-|+..|..-...-|..+. .|+..++.|... .++.||+.|+..|..+|++++.....
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 445666 444 8899999999999999999998865 467789999984 58899999999999999988765433
Q ss_pred -----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 106 -----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 106 -----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~--------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+..+|+++|++.++.....+-.+|..+...++ .+.+..|+..+. ..+..+|+.++.-|..
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~-----~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR-----TEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT-----SCCSTHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc-----CCChhHHHHHHHHHHH
Confidence 45599999999888888888888888876544 246667777775 4456788888877764
No 29
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.16 E-value=0.018 Score=52.49 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=94.4
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHH
Q 008918 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ria 107 (549)
-+...+..+|...+ +++.++.-|+..+.++-. ..++..++.++.|+++.||..|++.|..++. +...
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~ 78 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 78 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 46778889998887 889999999999988754 4789999999999999999999999998874 2577
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+.|..+|.++++..+..+-.+|..+-. ...+..|...+. +.+..+|..++.-|.
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALK-----DEDWFVRIAAAFALG 132 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 889999999888877777777666533 344555555554 456778887776654
No 30
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.15 E-value=0.0093 Score=57.27 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=82.2
Q ss_pred cCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHH
Q 008918 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE 121 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E 121 (549)
..++.++.-|+.-+.++....|.....++..++.++.|+++.||.+|+..|..+... ...+.|.++|.++++..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~v 175 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLKDPNGDV 175 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHcCCCHHH
Confidence 367778888888888887777777778888888888888888888888888877642 36677778888887777
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 122 RDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 122 ~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+..+-.+|..+ ..+....+..|...+. +++..+|..++.-|.
T Consensus 176 r~~a~~aL~~~-~~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 176 RNWAAFAININ-KYDNSDIRDCFVEMLQ-----DKNEEVRIEAIIGLS 217 (280)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-ccCcHHHHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 77777777554 3334556666666664 445667777776554
No 31
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.13 E-value=0.0037 Score=62.46 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhcCchhhhh
Q 008918 344 VECLLYTFHHLAHKAPNATNS 364 (549)
Q Consensus 344 vEcLLyafh~L~~K~P~~l~~ 364 (549)
+-+.+-++..++|+.|.|++.
T Consensus 231 l~a~lnsL~~Iak~RP~~~~r 251 (257)
T 3gs3_A 231 LIACTSSLCTIAKMRPIFMGA 251 (257)
T ss_dssp HHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHH
Confidence 668999999999999998754
No 32
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.13 E-value=0.02 Score=52.57 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=93.7
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHH
Q 008918 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ria 107 (549)
.+.+....++...+ ++..++..|+..+.++-. ..++..++.++.|+|+.||..|++.|-.++. +...
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~ 83 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 83 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 56777788888777 789999999999988754 5789999999999999999999999999874 3567
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+.|.++|.++++..+..+-.+|..+- ....+..|...+. +++..+|..++.-|.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALK-----DEDWFVRIAAAFALG 137 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 88999999988887777766666553 3345555555554 556778887776654
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.96 E-value=0.0067 Score=55.76 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=83.0
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHH
Q 008918 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (549)
Q Consensus 31 ~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDV 109 (549)
.+....++...+ +++.++..|+..+.++-. ..++..++.++.|+|+.||..|+..|..++. +...+.
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~ 116 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 116 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 355666666666 678888888888887742 4678888888888888999999998888864 246678
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
|.++|.++++..+..+-.+|-.+- ....+..|...+. +.+..||..++.-|.
T Consensus 117 L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 117 LIKALKDEDWFVRIAAAFALGEIG---DERAVEPLIKALK-----DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 888888888877777766666653 2334455555443 445667766665444
No 34
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.95 E-value=0.0086 Score=54.61 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=97.2
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHH
Q 008918 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (549)
Q Consensus 31 ~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDV 109 (549)
.+....++...+ +++.++.-|+..+.++-. ..++..++.+..|+++.||..|++.|-.+.. +...+.
T Consensus 44 ~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~ 111 (201)
T 3ltj_A 44 ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 111 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 345666777666 778899999988888742 4788889999999999999999999988864 246788
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhh----c-ccchhhhcCChH
Q 008918 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK----V-FPLKAELLKPQE 184 (549)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~k----l-~~l~~e~~~~~e 184 (549)
|.++|.++++..+..+-.+|-.+-. ...+..|...+. +++..+|..++.-|..- . ..|..-+-.+..
T Consensus 112 L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~ 183 (201)
T 3ltj_A 112 LIKALKDEDWFVRIAAAFALGEIGD---ERAVEPLIKALK-----DEDGWVRQSAADALGEIGGERVRAAMEKLAETGTG 183 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCH
Confidence 8889988888777777777766533 344555555553 34567887666655431 1 112222222445
Q ss_pred HHHHHHHHHHHH
Q 008918 185 EMERHITDLIKK 196 (549)
Q Consensus 185 E~Ee~i~~~ikK 196 (549)
++.......+.+
T Consensus 184 ~vr~~A~~aL~~ 195 (201)
T 3ltj_A 184 FARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 35
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.87 E-value=0.088 Score=61.30 Aligned_cols=273 Identities=15% Similarity=0.162 Sum_probs=156.4
Q ss_pred CCHHHHHHHhhhhHHhhccCccc----hHHHHHHhhhhccccchhHHHHHhhhcccccccC-------------------
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDL----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT------------------- 99 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~------------------- 99 (549)
.+.++++-|++.+..+...+|+. -++.+..+++...|.+..||..|+..|..+|+..
T Consensus 345 ~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred cCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 44677999999999999888863 3445666777778999999999999999987521
Q ss_pred ----ccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch-------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHH
Q 008918 100 ----PEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (549)
Q Consensus 100 ----~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~-------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl 168 (549)
..+++.+...|.+.|+++++.++..+-.+|..++...+ ...+..++..+.+ +.....+|+.++.++
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d---~~~~~~v~~~a~~~l 501 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND---KSSSSNLKIDALSCL 501 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC---SSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcC---CCCcchHHHHHHHHH
Confidence 24778888999999999998888888888888877533 2344455555532 112346888888887
Q ss_pred HhhcccchhhhcCChHHHHHHHHHHHHHhcccccHH----HHHHHHHHHhhccccCCC---CchhHHHHHHHHHHHhhhc
Q 008918 169 RDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGA----EFRMFMDFLKSLSLFGEK---APTERMKELIGIIEGQADL 241 (549)
Q Consensus 169 ~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~----EF~l~m~iL~~l~~~~t~---~~~gr~qeLv~~i~eqa~L 241 (549)
..-+..++++.+. ..-..++..+.+.++|-... =...+-++++.+...... .-......++..+... |
T Consensus 502 ~~~~~~~~~~~~~---~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~--l 576 (1230)
T 1u6g_C 502 YVILCNHSPQVFH---PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR--L 576 (1230)
T ss_dssp HHHHHSSCGGGGH---HHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH--H
T ss_pred HHHHHhCCHHHHH---hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH--H
Confidence 7655444333220 01112344444455553321 112333444333221000 0001124455554432 2
Q ss_pred cccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHH
Q 008918 242 DAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPS 321 (549)
Q Consensus 242 d~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~ 321 (549)
.. ...|++.-...+.|+......+..... +++.-++..+.+.+. .+..+...++.+..++......+....++.
T Consensus 577 ~~--~d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~~~~ 650 (1230)
T 1u6g_C 577 KA--ADIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPVLGE 650 (1230)
T ss_dssp SC--SSSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred hc--cCCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhCccccchHHHHHH
Confidence 11 123445556677777776666544332 333333333333332 234567788888888765444344445555
Q ss_pred HHHHh-hhc
Q 008918 322 VAVLL-KYM 329 (549)
Q Consensus 322 i~~~L-~ym 329 (549)
|...| ..+
T Consensus 651 i~~~L~~~l 659 (1230)
T 1u6g_C 651 GVPILASFL 659 (1230)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 55555 444
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.85 E-value=0.0092 Score=55.88 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=99.0
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHH-----HHHHhhhhccccchhHHHHHhhhcccccccCccchh---
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS--- 104 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~--- 104 (549)
...++...+ +++..+.-|+..+.....+.|+.... ++..++.+..++++.||.+|+..|-.||.+.+..+.
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (252)
T 4db8_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence 344555555 67899999999999999888877544 788999999999999999999999999987654312
Q ss_pred --hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 105 --KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 105 --riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
.+.+.|+++|.++++..+..+-.+|..+...++. +.+..|+.-+. ++++.+|+.++..|..
T Consensus 136 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWALSN 206 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG-----CSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC-----CCCHHHHHHHHHHHHH
Confidence 2778999999999888888888888887765432 23445555554 3456677777766553
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.78 E-value=0.23 Score=47.39 Aligned_cols=123 Identities=9% Similarity=-0.005 Sum_probs=89.9
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHH-
Q 008918 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ- 112 (549)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~Q- 112 (549)
..++...+ +++.++..|+.-+.+.. ...++..++.++.|+++.||..|+..|..+... ++.+..+..+|.+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccchHHHHHHHHH
Confidence 34455444 67888888888888775 467999999999999999999999999998743 2445566677764
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhc---hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 113 LLAAEEIVERDAVHKALMSLLRQD---VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~d---~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
++.++++..+..+-.+|..+-..+ ....+..|...+. +.+..+|..++.-|.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-----d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 567777888888888888876544 2344555555554 456778887776655
No 38
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.67 E-value=0.017 Score=60.96 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=54.3
Q ss_pred CccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008918 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (549)
=|+|.++-++.++.++-|.+..||++.+.=|-+.|+..+|+++++.|+|.-||.++++..+..|=.+..++|+.
T Consensus 57 dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 57 DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKV 130 (386)
T ss_dssp CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 56677777777778888888888888888888888777788888888888888777776555555555555543
No 39
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.65 E-value=0.042 Score=64.00 Aligned_cols=136 Identities=17% Similarity=0.173 Sum_probs=97.8
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhcc-----CccchHHHHHHhhhhccccchhHHHHHhhhccccccc-Cccchhh
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKF-----FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-TPEYLSK 105 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~-----FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~-~~e~~~r 105 (549)
.+..+|+... .+...++.|...+.++++. =|+..++.+..+++.+.|.++.||.+|++.|..++.. .++++..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~ 86 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 86 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455666555 6677788887777776543 1244678899999999999999999999999998743 3357788
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch-------------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhc
Q 008918 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (549)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~-------------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl 172 (549)
+.+.|.+.|.++++..+.++-.+|.++...-+ ...+..|+..+.+ +++..+|+-++..+..-+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~----~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK----QEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHH
Confidence 99999999988888888998889888876533 2334444444431 244567888887776544
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.50 E-value=0.072 Score=60.00 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=84.8
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc-----hhhHHHHHHHHHhhc
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE 117 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~-----~~riaDVL~QLLqsd 117 (549)
++...++-++++|.+- .-+.+...+|..++.|+.++|+.||..|+..|-.||.+...- .+.+...|+++|.++
T Consensus 127 ~~~~~r~~a~~~l~~~--~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~ 204 (780)
T 2z6g_A 127 PSQMLKHAVVNLINYQ--DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 204 (780)
T ss_dssp CSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh--hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC
Confidence 6677778888888632 335677899999999999999999999999999999754211 124677788889875
Q ss_pred -hhHHHHHHHHHHHHHHhhc-------hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 118 -EIVERDAVHKALMSLLRQD-------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 118 -d~~E~~~v~~aL~sllk~d-------~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
++..+..+-.+|..|-..+ -.+.+..|+..+. ++++.+|..++..|.
T Consensus 205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~-----~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 205 NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG-----SPVDSVLFHAITTLH 259 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 6666667777777643321 1245566666665 445677777666555
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.42 E-value=0.081 Score=57.89 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=82.6
Q ss_pred HHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHH
Q 008918 47 AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH 126 (549)
Q Consensus 47 ~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~ 126 (549)
+..=|+..|-.. ..-|++.+.|++.+..++++.|+.||-.|+..|-.++..+|+.+.+.-+.+..+|.++|..-+..+=
T Consensus 293 V~~ea~~~i~~l-~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 293 ILYETVLTIMDI-KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 333344444432 2335666789999999999999999999999999999888888888777888888887776665555
Q ss_pred HHHHHHHhhc-hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 127 KALMSLLRQD-VKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 127 ~aL~sllk~d-~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
..|..+...+ ....+.-|..++. +.++.+|..++..|..
T Consensus 372 elL~~l~~~~nv~~iv~eL~~~l~-----~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 372 ELSFALVNGNNIRGMMKELLYFLD-----SCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHHCCSSSTHHHHHHHHHHHH-----HCCHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHH
Confidence 5555555442 3456666777776 3456677766655543
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.32 E-value=0.39 Score=52.78 Aligned_cols=130 Identities=10% Similarity=0.049 Sum_probs=102.5
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHH
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~Q 112 (549)
|-.++.... .+...|||+--++..|++.-||+.--++|++..=+.|.++.||-.|++.|..++ +++++.-+..-+.+
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~ 153 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMAEAFAGEIPK 153 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHHHH
Confidence 566666665 789999999999999999999999999999998888999999999999999996 46888889999999
Q ss_pred HH--hhchhHHHHHHHHHHHHHHhhchHHH-----HHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 113 LL--AAEEIVERDAVHKALMSLLRQDVKAS-----LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 113 LL--qsdd~~E~~~v~~aL~sllk~d~k~t-----L~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+| .+.+|-.+..+=-|+..+++.+|... +..+..-+. +.+-.|+.-++..+.+
T Consensus 154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~-----d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 154 ILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-----DQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC-----CCCccHHHHHHHHHHH
Confidence 99 77888888888788888888877532 223333222 2334567766666554
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.98 E-value=2 Score=45.35 Aligned_cols=117 Identities=13% Similarity=0.213 Sum_probs=86.3
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhc--cCccc----hHHHHHHhhhhcc-ccchhHHHHHhhhcccccccCccchh
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFK--FFPDL----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLS 104 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk--~FP~L----~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~e~~~ 104 (549)
....|+.+.+ ++.....-|.+-+.|.-. .-|-. ..-+|-.++.|.. ++++.|+..|...|-.||..++++..
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4788999999 556666667787777653 22322 2235778999886 55689999999999999999988876
Q ss_pred hH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhh
Q 008918 105 KI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (549)
Q Consensus 105 ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~ 149 (549)
.| ...|+++|.+.++..+..+-.+|..|-.-.+. +.+..|...+.
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 65 45899999999998888888888888754443 33455565554
No 44
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.96 E-value=0.022 Score=49.27 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=76.0
Q ss_pred HHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHH
Q 008918 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL 114 (549)
Q Consensus 36 ~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLL 114 (549)
.++...+ .++.++..|+.-+.++. +.++..++.++.|+|+.||..|++.|-.+.. +...+.|..+|
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~-------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L 82 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMG-------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLL 82 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCS-------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhC-------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHH
Confidence 3344444 45566666666666543 2347888999999999999999999999874 35688888999
Q ss_pred hhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHH
Q 008918 115 AAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (549)
Q Consensus 115 qsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl 168 (549)
.++++..+..+-.+|..+- ....+..|...+. +++..||..++.-|
T Consensus 83 ~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~-----d~~~~vr~~A~~aL 128 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG---GERVRAAMEKLAE-----TGTGFARKVAVNYL 128 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTT-----SCCTHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 8888888888777776653 3445566665554 34557887776544
No 45
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.92 E-value=0.026 Score=56.32 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=27.6
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhccccc
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lc 96 (549)
.+...++..++||..=|+.-|++..++++++..|++|+|+.|-+.||...-.+.
T Consensus 65 ~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 65 SNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555444443
No 46
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.85 E-value=0.014 Score=50.45 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=70.9
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHH
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~Q 112 (549)
...++...+ .++.++..|+.-+.++-. ..++..++.+.+|+++.||..|+..|-.++. +...+.|.+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~ 111 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEK 111 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHH
Confidence 466677666 789999999999888652 6789999999999999999999999999974 367889999
Q ss_pred HHhhchhHHHHHHHHHHH
Q 008918 113 LLAAEEIVERDAVHKALM 130 (549)
Q Consensus 113 LLqsdd~~E~~~v~~aL~ 130 (549)
+|.++++..+..+-.+|.
T Consensus 112 ~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 112 LAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HTTSCCTHHHHHHHHHGG
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 999888888777777664
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.73 E-value=0.029 Score=56.53 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=88.0
Q ss_pred CCHHHHHHHhhhhHHhhccCccchH-----HHHHHhhh-hccccchhHHHHHhhhcccccccCccchhh-----HHHHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILV 111 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e-----~Ai~a~lD-LcEDed~~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL~ 111 (549)
++.+.|..|...+..+....+ .+. -++..++. |....++.||.+|+..|-.++.+++++-.. +...|+
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 445788888888888887543 333 47888999 999999999999999999999999876333 557899
Q ss_pred HHHhhc-hhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 112 QLLAAE-EIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 112 QLLqsd-d~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+||.++ ++..+..+-.||..+.+.++. +.+..|...+. +++..++.++...|+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~-----~~d~~v~~~A~~aLs 192 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-----QQVQKLKVKSAFLLQ 192 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 999976 667778888899998875443 23444444444 445666665554443
No 48
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.72 E-value=0.019 Score=60.64 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=102.7
Q ss_pred chHHHHHHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHH
Q 008918 7 EAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR 85 (549)
Q Consensus 7 ~~~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR 85 (549)
+++-|+.|.+..+.+-. +|.+--.+-|..||.... .+..+++..++||..=|+.-+++..++++++..|++|+|+.|-
T Consensus 39 ~~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 39 NDSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp STHHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred hHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 35678888888885433 455566778999999766 7899999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccCccchhhHHHHHHHHHh-hchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 008918 86 VQAIRGLPLFCKDTPEYLSKIVDILVQLLA-AEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKV 164 (549)
Q Consensus 86 ~qAIk~Lp~lck~~~e~~~riaDVL~QLLq-sdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~ 164 (549)
+.||...-.+.+ +..|.+. .....+..--.+..++-+|. .+++.+. ++.+.+|-.+
T Consensus 118 K~~I~~~tslYp-----------l~f~~i~~~~~~~~~~e~~W~~m~~lK~-------~Il~~~d-----s~n~GVrl~a 174 (386)
T 3o2t_A 118 KKAILTMTQLYK-----------VALQWMVKSRVISELQEACWDMVSAMAG-------DIILLLD-----SDNDGIRTHA 174 (386)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHC-CCCHHHHHHHHHHHHHHH-------HHHHGGG-----CSSHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHhcCCCcchhHHHHHHHHHHHHH-------HHHHHhc-----cCCcchHHHH
Confidence 999998877753 2223333 33323333333455555554 3444443 5668899999
Q ss_pred HHHHH
Q 008918 165 LSFIR 169 (549)
Q Consensus 165 l~Fl~ 169 (549)
+||+.
T Consensus 175 iKFle 179 (386)
T 3o2t_A 175 IKFVE 179 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99965
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.67 E-value=1.6 Score=46.19 Aligned_cols=117 Identities=13% Similarity=0.207 Sum_probs=87.9
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhHHhhccC--ccc----hHHHHHHhhhhcc-ccchhHHHHHhhhcccccccCccchh
Q 008918 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF--PDL----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLS 104 (549)
Q Consensus 33 ~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~F--P~L----~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~e~~~ 104 (549)
.+..|+.+.+ ++.....-|.+.|.|....= |-. ..-+|..++.++. ++++.++..|...|-.||..++++..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5788999998 55666667778888876433 222 3456778899986 66689999999999999998888765
Q ss_pred hH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhh
Q 008918 105 KI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (549)
Q Consensus 105 ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~ 149 (549)
.| ...|++||.+.++.....+-.+|-.|..-++. +.+..|...+.
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 54 46899999999998888888888888765443 34455666554
No 50
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.54 E-value=0.52 Score=48.59 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=56.5
Q ss_pred ccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc-----hhhHHHHHHHHHhhc-hhHHHHHHHHHHHHHHhhc
Q 008918 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE-EIVERDAVHKALMSLLRQD 136 (549)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~-----~~riaDVL~QLLqsd-d~~E~~~v~~aL~sllk~d 136 (549)
|++...+|..++.|+.++|+.||..|+..|-.+|.+...- ...+...|+++|.+. ++..+..+-.+|..+-..+
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 5556667778888888888888888888888887654311 113566677777654 5555555555555543221
Q ss_pred -------hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 137 -------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 137 -------~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
-.+.+..|...+. ++++.+++.++..|.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~-----~~~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLG-----SPVDSVLFYAITTLH 126 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 1134445554444 344556665555544
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.42 E-value=0.14 Score=48.46 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred cchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008918 64 DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLL 133 (549)
Q Consensus 64 ~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sll 133 (549)
...+.-+.++++.+.|..+.||.+|...|-.++... .+..+.+.|...|++..+..+..+-..|..++
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--SLEAQQESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555554432 23445555555555555555555545554443
No 52
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.36 E-value=0.53 Score=51.06 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=36.8
Q ss_pred ccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc-----hhhHHHHHHHHHhhc-hhHHHHHHHHHHHH
Q 008918 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE-EIVERDAVHKALMS 131 (549)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~-----~~riaDVL~QLLqsd-d~~E~~~v~~aL~s 131 (549)
+.+...+|..++.|+.++|+.||..|++.|-.+|.+...- ...+...|+++|.+. ++..+..+-.+|..
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 83 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4445556666666666666677777777777666554311 113455566666653 44444444444443
No 53
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.29 E-value=0.92 Score=46.69 Aligned_cols=171 Identities=10% Similarity=0.028 Sum_probs=105.6
Q ss_pred HHHHHhc-CCHHHHHHHhhhhHHhhccCccc-----hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh----
Q 008918 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK---- 105 (549)
Q Consensus 36 ~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r---- 105 (549)
.++...+ +++..+..|+..+.....+.++. ...++..++++..++++.+|..|...|-.+|.+++++...
T Consensus 105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~ 184 (529)
T 1jdh_A 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 4444444 67889999999999888876664 3567889999999999999999999999998877666433
Q ss_pred -HHHHHHHHHhhchhHHHH-HHHHHHHHHHhhch--------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccc
Q 008918 106 -IVDILVQLLAAEEIVERD-AVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (549)
Q Consensus 106 -iaDVL~QLLqsdd~~E~~-~v~~aL~sllk~d~--------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l 175 (549)
....|+++|.+.++..+. ++-.+|..+-. ++ .+.+..|...+. .++..+++.++..|..=....
T Consensus 185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLT-----DPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTT-----SSCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHh-----CCChHHHHHHHHHHHHHhcCC
Confidence 456889999887654433 23333333321 22 245566666554 335667776666554311111
Q ss_pred hhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccc
Q 008918 176 KAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSL 218 (549)
Q Consensus 176 ~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~ 218 (549)
+. .+....++..+.+.|.+-..+-.......|..|..
T Consensus 259 ~~------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 259 TK------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp TT------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hh------hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 11 11223455555566665554444444555665543
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.23 Score=48.26 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=96.9
Q ss_pred hhhHHHHHHH----h--cCCHHHHHHHhhhhHHhhccC-----c-cchHHHHHHhhhhccccchhHHHHHhhhccccccc
Q 008918 31 VKDYEGIIEA----A--KTSLKAKQLAAQLIPRFFKFF-----P-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (549)
Q Consensus 31 ~~~Y~~Il~~----~--kg~~k~K~LaaQfI~kffk~F-----P-~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~ 98 (549)
..+|..++++ . +.+..+-..|++-|..+.+.+ - ......+-++++.+.|-...||.+|...|-.||..
T Consensus 55 ~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455566554 2 367778888888887766554 3 56678889999999999999999999999999865
Q ss_pred Cc-----cchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--HHHHHHH-HhhhcC---CCCCChHHHHHHHHHH
Q 008918 99 TP-----EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--ASLTALF-KHIGSV---DEPSTDEFIREKVLSF 167 (549)
Q Consensus 99 ~~-----e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k--~tL~~lf-~qI~~~---~e~~~eE~vREr~l~F 167 (549)
.+ -|+..+.+.|...|++..+..+..+-+.|..++...+. ..+...+ ..|.+. --...+..||+.++..
T Consensus 135 ~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~ 214 (249)
T 2qk1_A 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES 214 (249)
T ss_dssp SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 42 24778888889999999999999999999999977553 2333333 222200 0003355677777665
Q ss_pred HHh
Q 008918 168 IRD 170 (549)
Q Consensus 168 l~~ 170 (549)
+..
T Consensus 215 l~~ 217 (249)
T 2qk1_A 215 FAI 217 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.35 Score=47.01 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=103.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhhHH-hhccCccch------HHHHHHhhhhc-cccchhHHHHHhhhcccccccCc--c
Q 008918 32 KDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLS------SRAVDAHLDLI-EEEELGVRVQAIRGLPLFCKDTP--E 101 (549)
Q Consensus 32 ~~Y~~Il~~~kg~~k~K~LaaQfI~k-ffk~FP~L~------e~Ai~a~lDLc-EDed~~IR~qAIk~Lp~lck~~~--e 101 (549)
++|..-|. ...-++++=|..-|.. +...-|++. .+.++++.... .|.++.||..|++.|-.||++-. +
T Consensus 19 ~~f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 19 KDFQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp TTHHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hhHHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 35555552 3456666666666777 664444433 46788888888 79999999999999999985432 3
Q ss_pred ch-hhHHHHHHHH---HhhchhHHHHHHHHHHHHHHhhc--------hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 102 YL-SKIVDILVQL---LAAEEIVERDAVHKALMSLLRQD--------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 102 ~~-~riaDVL~QL---Lqsdd~~E~~~v~~aL~sllk~d--------~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+- +-...||..+ |.+-.+..++++..||..++..- ....+..|+..+. +..-.+|+-++.||.
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~-----~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK-----HKTPQIRMECTQLFN 171 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc-----CCChHHHHHHHHHHH
Confidence 22 2233444444 44344678899999999999853 3356667776665 345689999999998
Q ss_pred hhcccchh--hhcCChHHHHHHHHHHHHHhccccc
Q 008918 170 DKVFPLKA--ELLKPQEEMERHITDLIKKSLEDVT 202 (549)
Q Consensus 170 ~kl~~l~~--e~~~~~eE~Ee~i~~~ikKvL~dVT 202 (549)
.-+...+. ..+ ...+...|+..+.+.|.|-.
T Consensus 172 ~~~~~~~~~~~~l--~~~l~~~iip~l~~~l~D~~ 204 (249)
T 2qk1_A 172 ASMKEEKDGYSTL--QRYLKDEVVPIVIQIVNDTQ 204 (249)
T ss_dssp HHHHHCCSCSHHH--HHHHTTTHHHHHHHHHTCSS
T ss_pred HHHHHcCCcchhH--HHHHHHHHHHHHHHHhcCCC
Confidence 76644332 111 01111235556666666543
No 56
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.94 E-value=1 Score=51.33 Aligned_cols=150 Identities=8% Similarity=0.069 Sum_probs=94.7
Q ss_pred CHHHHHHHhhhhHHhhccCc-cchHHHHHHhhhhccccchhHHHHHhhhccccccc-----------Cc----cchhhHH
Q 008918 44 SLKAKQLAAQLIPRFFKFFP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-----------TP----EYLSKIV 107 (549)
Q Consensus 44 ~~k~K~LaaQfI~kffk~FP-~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~-----------~~----e~~~ria 107 (549)
++.++.=|+-+|.+|-..|+ +.....+.+++....|+++-||..|..+|-.||.. .+ .|+..+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 88999999999999998876 56788889999988999999999999999999862 12 2345556
Q ss_pred HHHHHHHhhc-----hhHHHHHHHHHHHHHHhhch---H-------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhc
Q 008918 108 DILVQLLAAE-----EIVERDAVHKALMSLLRQDV---K-------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (549)
Q Consensus 108 DVL~QLLqsd-----d~~E~~~v~~aL~sllk~d~---k-------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl 172 (549)
..|.++|+.. +..|.+.+-.+|.+++..-. . ..|..++..+.. + .++-.++..++.-|..=+
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~--~-~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK--N-PSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT--S-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh--C-CCCcHHHHHHHHHHHHHH
Confidence 6666666664 12255677777777655321 1 122233333321 1 223345555555444322
Q ss_pred ccchhhhcCChHHHHHHHHHHHHHhcc
Q 008918 173 FPLKAELLKPQEEMERHITDLIKKSLE 199 (549)
Q Consensus 173 ~~l~~e~~~~~eE~Ee~i~~~ikKvL~ 199 (549)
....++. ....++.+...+..+|+
T Consensus 628 ~~~~~~~---~~~~~~~~~p~~~~iL~ 651 (960)
T 1wa5_C 628 NYTQRQN---LPLLVDSMMPTFLTVFS 651 (960)
T ss_dssp HTSCGGG---HHHHHHHHHHHHHHHHH
T ss_pred hcCCcch---HHHHHHHHHHHHHHHHH
Confidence 2212121 23567777787777775
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.66 E-value=1.7 Score=46.04 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=85.2
Q ss_pred HHHHHHHhhhhHHhhccC---ccc--hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-----HHHHHHHHH
Q 008918 45 LKAKQLAAQLIPRFFKFF---PDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLL 114 (549)
Q Consensus 45 ~k~K~LaaQfI~kffk~F---P~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL~QLL 114 (549)
....+-|+-.+.....+- +.. ...++..++.|+.++++.|+..|...|..+|...++...- +...|+++|
T Consensus 223 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL 302 (529)
T 3tpo_A 223 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302 (529)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh
Confidence 345667777777766543 332 4678999999999999999999999999999877766433 566899999
Q ss_pred hhchhHHHHHHHHHHHHHHhhchHHH--------HHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 115 AAEEIVERDAVHKALMSLLRQDVKAS--------LTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 115 qsdd~~E~~~v~~aL~sllk~d~k~t--------L~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
.+.++.....+-.+|..+...++..+ +..|...+. +.++.+|+.+.-.|.
T Consensus 303 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-----~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-----NPKTNIQKEATWTMS 360 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 99998888888888888776554433 223333333 445667766554444
No 58
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.42 E-value=4.1 Score=45.75 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=88.5
Q ss_pred cCCHHHHHHHhhhhHHhhccCccc-----hHHHHHHhhhhccc-cchhHHHHHhhhcccccccCccchhh-----HHHHH
Q 008918 42 KTSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK-----IVDIL 110 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~FP~L-----~e~Ai~a~lDLcED-ed~~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL 110 (549)
..++.+++-|+..|....++.+.. ...+|..++.+..+ +|+.+|..|++.|-.||.+ +++... +..+|
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~L 239 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPAL 239 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHH
Confidence 378899999999999888765433 34689999988864 5899999999999999865 233222 56789
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 111 VQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 111 ~QLLqsdd~~E~~~v~~aL~sllk~d~--------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+++|+++++.....+-.+|..|...++ .+.+..|...+. +++..+++.++..|.
T Consensus 240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~-----~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----KTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-----CCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 999999988888888888888776532 345566666665 345566766544443
No 59
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.02 E-value=1.8 Score=45.79 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=73.3
Q ss_pred HHHHHHHhhhhHHhhccC---ccc--hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-----HHHHHHHHH
Q 008918 45 LKAKQLAAQLIPRFFKFF---PDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLL 114 (549)
Q Consensus 45 ~k~K~LaaQfI~kffk~F---P~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL~QLL 114 (549)
....+-++..+.....+- +.+ ...++..++.|+.++++.|+..|...|..+|..+++...- +...|+++|
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 345666776666665533 333 3678999999999999999999999999999887765433 567899999
Q ss_pred hhchhHHHHHHHHHHHHHHhhchHHH
Q 008918 115 AAEEIVERDAVHKALMSLLRQDVKAS 140 (549)
Q Consensus 115 qsdd~~E~~~v~~aL~sllk~d~k~t 140 (549)
.+.++.....+-.+|..+...++..+
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~ 309 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQT 309 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHH
Confidence 99998888877788887776665443
No 60
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.72 E-value=0.14 Score=50.74 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=84.1
Q ss_pred CCHHHHHHHhhhhHHhhc-cCccchHHHHHHhhhhccccchhHHHHHhhhccccccc--CccchhhHHHHHHHHHhhchh
Q 008918 43 TSLKAKQLAAQLIPRFFK-FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKIVDILVQLLAAEEI 119 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk-~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~--~~e~~~riaDVL~QLLqsdd~ 119 (549)
.+=.+-..+|..+..+.+ ..|+. ++..+...+.|++.-||..|+-++.-.|+- -+....++..+|..|+.+++.
T Consensus 116 ~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~ 192 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSE 192 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCH
T ss_pred CCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHH
Confidence 455677788888888886 88873 677888999999999999999998767642 123345688888888888999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhhh
Q 008918 120 VERDAVHKALMSLLRQDVKASLTALFKHIG 149 (549)
Q Consensus 120 ~E~~~v~~aL~sllk~d~k~tL~~lf~qI~ 149 (549)
-.+.+|=|+|..+-|.||.-+..-+=.|..
T Consensus 193 yVrKSVan~LrD~SK~~Pd~V~~~~~~w~~ 222 (240)
T 3l9t_A 193 YVRKSVGNALRDISKKFPDLVKIELKNWKL 222 (240)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Confidence 999999999999999999988776666643
No 61
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.93 E-value=6.9 Score=44.00 Aligned_cols=137 Identities=11% Similarity=0.083 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHHHhhhhhccCCChhhH-HHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCC-hhhh----hhhHHH
Q 008918 248 SDADHIDRLISCLYMALPFFLRGASGSKF-LNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT-PQDS----RQILPS 321 (549)
Q Consensus 248 sD~e~idRli~cl~~Alp~fs~~v~st~f-~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~-~~da----~~~l~~ 321 (549)
+++|...-+..++...+.++...+-+++. +..++..++-.+..-..+-.--.++.+.++..++. .... ...++.
T Consensus 785 ~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 864 (963)
T 2x19_B 785 DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRM 864 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHH
T ss_pred cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 35788877777777776655444433343 55555555554542212223334444555444433 1112 234555
Q ss_pred HHHHh-hhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccccccc--cCCCCCCCCCChhhhhHHHHHHH
Q 008918 322 VAVLL-KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIV--TGQPSDRLGEDFSDCYKDFTERL 394 (549)
Q Consensus 322 i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~--Tgqpsd~~geD~~~~~kdF~~RL 394 (549)
|...+ ..+-. +.+...|..+=-+|+ .|..++|+++...+. ..+ .+.|+.... ++-...|...|
T Consensus 865 l~~~l~~~l~~---~~~~~~~~~~~~il~---~l~~~~~~~~~~~l~-~~l~~~~~p~~~~~---~~~~~~f~~~l 930 (963)
T 2x19_B 865 LLIAVLEAIGG---QASRSLMDCFADILF---ALNKHCFSLLSMWIK-EALQPPGFPSARLS---PEQKDTFSQQI 930 (963)
T ss_dssp HHHHHHHHHTT---TSCGGGHHHHHHHHH---HHHHHSHHHHHHHHH-HHTCSTTSSCTTCC---HHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cCChhHHHHHHHHHH---HHHHHChHHHHHHHH-HHhcccCCCCCcCC---HHHHHHHHHHH
Confidence 55444 33321 135566654333333 567788885544322 122 366655554 34455665555
No 62
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.68 E-value=6.1 Score=38.57 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=129.5
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHH-HHHHHHHHHHHhhch---HHHH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDV---KASL 141 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~-~~v~~aL~sllk~d~---k~tL 141 (549)
-++.+++++.+.+|+==-||++||.-|..+.+.-||...-..|=|.-||..++..-+ +.+-++|=++-+..| ++++
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence 356688899999999888999999999999999999999999999989888888777 888889888888877 4566
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCC
Q 008918 142 TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGE 221 (549)
Q Consensus 142 ~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t 221 (549)
-.||-... -||+.+|-- -.|++++|-++-...-+.=|.-|+++|
T Consensus 110 p~lfanyr-----igd~kikIn-----------------------~~yaLeeIaranP~l~~~v~rdi~sml-------- 153 (253)
T 2db0_A 110 PVLFANYR-----IGDEKTKIN-----------------------VSYALEEIAKANPMLMASIVRDFMSML-------- 153 (253)
T ss_dssp HHHHHHSC-----CCSHHHHHH-----------------------HHHHHHHHHHHCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHh-----cCCccceec-----------------------HHHHHHHHHHhChHHHHHHHHHHHHHh--------
Confidence 66676665 445544422 234455554431111111111111111
Q ss_pred CCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCC-hhhHHHHHHhhhcccCCCCCh---hhhh
Q 008918 222 KAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGAS-GSKFLNYLNKHIIPVFDKLPE---ERKL 297 (549)
Q Consensus 222 ~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~-st~f~~y~~~~vlP~l~~l~e---~~kl 297 (549)
++++..||+. ||-|++.-.. +.+|++=+...++--|++=++ ..-.
T Consensus 154 --------------------------tskd~~Dkl~-----aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaV 202 (253)
T 2db0_A 154 --------------------------SSKNREDKLT-----ALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAV 202 (253)
T ss_dssp --------------------------SCSSHHHHHH-----HHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHH
T ss_pred --------------------------cCCChHHHHH-----HHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHH
Confidence 1344567776 7778755444 577755444444444444333 2334
Q ss_pred hHHHHHHHhCCCCChhhhhhhHHHHHHHhhhcCCCCCCCCccchHHHHHHH
Q 008918 298 DLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLL 348 (549)
Q Consensus 298 ~lLK~lAE~s~~~~~~da~~~l~~i~~~L~ymP~~~~~~~~l~fS~vEcLL 348 (549)
+.|-.+|+..| ++-+.|-..|+.|-++. ...+|...|+|.
T Consensus 203 EtL~~lA~~np--------klRkii~~kl~e~~D~S---~lv~~~V~egL~ 242 (253)
T 2db0_A 203 EALVHLATLND--------KLRKVVIKRLEELNDTS---SLVNKTVKEGIS 242 (253)
T ss_dssp HHHHHHHTSCH--------HHHHHHHHHHHHCCCSC---HHHHHHHHHHHH
T ss_pred HHHHHHHHcCH--------HHHHHHHHHHHHhcCcH---HHHHHHHHHHHH
Confidence 55666665533 14444555567776543 468888888875
No 63
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.29 E-value=5.2 Score=45.25 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=54.5
Q ss_pred CHHHHHHHhhhhHHhhccC---ccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchh----hHHHHHHHHHhh
Q 008918 44 SLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS----KIVDILVQLLAA 116 (549)
Q Consensus 44 ~~k~K~LaaQfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~----riaDVL~QLLqs 116 (549)
++.++.=|...|.+|...| |+.-..+++.++... | +.|+..|...|-.||++-.+.+. -+.+.|.++++.
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 6777777777777766543 456677777777766 3 67778788777777765544333 333344455554
Q ss_pred --chhHHHHHHHHHHHHHHhh
Q 008918 117 --EEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 117 --dd~~E~~~v~~aL~sllk~ 135 (549)
-+..+...+-.++..++..
T Consensus 596 ~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 596 GRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHh
Confidence 2345666666666666653
No 64
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=92.18 E-value=0.56 Score=48.78 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=73.5
Q ss_pred HHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhh
Q 008918 38 IEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (549)
Q Consensus 38 l~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqs 116 (549)
+.... .+...|||.=-.|--|.+. |+..=-|+|++..=|.|.++-||-.|||.|..++.. +.+.-+..-+-|.|.+
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d 150 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVD 150 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCC
Confidence 33333 6788898888888777776 776668888888888888888888888888888754 6677788888888888
Q ss_pred chhHHHHHHHHHHHHHHhhchHH
Q 008918 117 EEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 117 dd~~E~~~v~~aL~sllk~d~k~ 139 (549)
.+|-.+..+==+..-|+..+|..
T Consensus 151 ~~pyVRk~A~l~~~kL~~~~pe~ 173 (355)
T 3tjz_B 151 KVPSVSSSALVSSLHLLKCSFDV 173 (355)
T ss_dssp SSHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHH
Confidence 88877766666666666666653
No 65
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=92.16 E-value=0.99 Score=48.94 Aligned_cols=90 Identities=12% Similarity=0.008 Sum_probs=58.2
Q ss_pred CCHHHHHHHhhhhHHhhccCccc--hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-----HHHHHHHHHh
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLA 115 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL~QLLq 115 (549)
++...++-|+..+.....+.|.. ...++..++.|..++|+.||..|...|..||..++++... +.+.|+++|.
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH
Confidence 55667777776666665554432 4577888888888888888888888888888766554332 5677788877
Q ss_pred hch--hHHHHHHHHHHHHH
Q 008918 116 AEE--IVERDAVHKALMSL 132 (549)
Q Consensus 116 sdd--~~E~~~v~~aL~sl 132 (549)
... +..+..+-.+|..|
T Consensus 316 ~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHL 334 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHH
Confidence 632 33334444444444
No 66
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=91.13 E-value=8.3 Score=38.63 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=115.3
Q ss_pred HHHHHHHhhhhhhccccc---cChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCcc---chHHHHHHhhhhccccchh
Q 008918 11 IEKLYEFGERLNEAKDKS---QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD---LSSRAVDAHLDLIEEEELG 83 (549)
Q Consensus 11 ie~LY~~~~~L~~akd~~---~~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~---L~e~Ai~a~lDLcEDed~~ 83 (549)
+..||=..+.|..+.+.- .-++-+-.||...| .+.++.-=|...+..--..-|= .-.+.++|+.|+..+.+.-
T Consensus 51 ~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~i 130 (265)
T 3b2a_A 51 LRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDM 130 (265)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCch
Confidence 677888888887775431 45566777887888 7799998899999888887763 3678999999999999999
Q ss_pred HHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc-hHHHHHHHHHhhhcCCCCCChHHHHH
Q 008918 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD-VKASLTALFKHIGSVDEPSTDEFIRE 162 (549)
Q Consensus 84 IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d-~k~tL~~lf~qI~~~~e~~~eE~vRE 162 (549)
+|-.|.-.+-.+-- ....+||.|+|.-|+.|.++.+-.+.=.+|.++-..- -++.+..+|+.|..- =.++|+.++|
T Consensus 131 l~~eaae~Lgklkv--~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~el-L~~eD~~l~e 207 (265)
T 3b2a_A 131 MRIETIDVLSKLQP--LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSL-LQNDNEFIVE 207 (265)
T ss_dssp HHHHHHHHHHHCCB--SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHH-HTCSCHHHHH
T ss_pred HHHHHHHHhCcCCc--ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 99999999888832 2347889999999999999988888877777776631 112233344333210 0145778899
Q ss_pred HHHHHHHh
Q 008918 163 KVLSFIRD 170 (549)
Q Consensus 163 r~l~Fl~~ 170 (549)
++|.-+-.
T Consensus 208 ~aLd~Le~ 215 (265)
T 3b2a_A 208 LALDVLEK 215 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876654
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=91.05 E-value=0.82 Score=52.24 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=72.9
Q ss_pred HHHHHhhhhccccchhHHHHHhhhcccccccCccch---------hh---HHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008918 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL---------SK---IVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~---------~r---iaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (549)
.|+.++.+|+.++...||++|..-|..++. +++-+ ++ ..++|++|+.++|...+.++-.+|..+-..
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 588899999999999999999999999975 33322 12 256999999999999999999999998776
Q ss_pred chHH------------HHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 136 DVKA------------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 136 d~k~------------tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+|.. .|..+|..+ .+++.+|.|.+.++..
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~------~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQ------IDDIELRQRLLMLFFG 725 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccccHHHHHHHHhcc------CCCHHHHHHHHHHHHH
Confidence 6642 333344432 3677788888887765
No 68
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=90.67 E-value=16 Score=41.62 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=63.0
Q ss_pred CCHHHHHHHhhhhHHhhcc----------CccchHHH-HHHhhhhccccchhHHHHHhhhcccccc-cCccchhhHHHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKF----------FPDLSSRA-VDAHLDLIEEEELGVRVQAIRGLPLFCK-DTPEYLSKIVDIL 110 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~----------FP~L~e~A-i~a~lDLcEDed~~IR~qAIk~Lp~lck-~~~e~~~riaDVL 110 (549)
.+..++.+||..+.++.++ .|+-.... =+.++..+-+++..||.++-..|..+.+ +-|+.-+-+.+.|
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L 128 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDL 128 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHH
Confidence 5688999999877665543 33322222 3456666666779999998888888764 3333347789999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHh
Q 008918 111 VQLLAAEEIVERDAVHKALMSLLR 134 (549)
Q Consensus 111 ~QLLqsdd~~E~~~v~~aL~sllk 134 (549)
.|++++.++..+..+=.+|.++++
T Consensus 129 ~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 129 ASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999887666666566666665
No 69
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.48 E-value=13 Score=43.43 Aligned_cols=137 Identities=14% Similarity=0.107 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhh-------hhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhcccc
Q 008918 8 AKQIEKLYEFGE-------RLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE 80 (549)
Q Consensus 8 ~~~ie~LY~~~~-------~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDe 80 (549)
.+.|+++|+.+. .+-||=-.+...+.++.|++..+...-...-|+|.+.- .-+.+.-..+.++.+.+||+++
T Consensus 325 ~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~-~~~~~~Pt~e~l~~~~~l~~~~ 403 (1056)
T 1lsh_A 325 AGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVAS-TLSNQQATRESLSYARELLNTS 403 (1056)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHH-hhccCCCCHHHHHHHHHHHhCc
Confidence 355666666542 22233222334455666666555221111226777763 4455666789999999999964
Q ss_pred ----chhHHHHHhhhcccc----ccc----CccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008918 81 ----ELGVRVQAIRGLPLF----CKD----TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (549)
Q Consensus 81 ----d~~IR~qAIk~Lp~l----ck~----~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI 148 (549)
++.+|..|+=++-.+ |.+ .++++..+++.|.+.+...+..|..+.=+||-.+=.- .++..|...|
T Consensus 404 ~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~l~~l~~~l 480 (1056)
T 1lsh_A 404 FIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NSIKKIQRFL 480 (1056)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GGHHHHHTTS
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hHHHHHHHhh
Confidence 456888888888777 655 4577899999999999998888888887777766553 3455444444
No 70
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.31 E-value=4.6 Score=45.73 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhHHhhccCccc----hHHHHHHhhhhccc--cchhHHHHHhhhccccccc-----CccchhhHHHHHHHH
Q 008918 45 LKAKQLAAQLIPRFFKFFPDL----SSRAVDAHLDLIEE--EELGVRVQAIRGLPLFCKD-----TPEYLSKIVDILVQL 113 (549)
Q Consensus 45 ~k~K~LaaQfI~kffk~FP~L----~e~Ai~a~lDLcED--ed~~IR~qAIk~Lp~lck~-----~~e~~~riaDVL~QL 113 (549)
+.+..-||.-|.+|-+..++. .+.-++.++.+... -+...+..++.+|-.+... ...|+.++.+.+.+.
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~ 636 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEE 636 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544322 23334444444443 3456777777777766432 234555555555544
Q ss_pred Hh
Q 008918 114 LA 115 (549)
Q Consensus 114 Lq 115 (549)
++
T Consensus 637 l~ 638 (971)
T 2x1g_F 637 LQ 638 (971)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=90.12 E-value=0.73 Score=48.26 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=81.9
Q ss_pred CCHHHHHHHhhhhHHhhccCccch-----HHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhH-----HHHHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQ 112 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ri-----aDVL~Q 112 (549)
+++..+.-|+..|.+.-.+-|... .-+|..++.++..+++.++.+|...|-.|+.+++++-..| ...|++
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~ 93 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS 93 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 678899999999999877777654 5578889999999999999999999999998888876666 568999
Q ss_pred HHh-hchhHHHHHHHHHHHHHHhhc-hH-----HHHHHHHHhh
Q 008918 113 LLA-AEEIVERDAVHKALMSLLRQD-VK-----ASLTALFKHI 148 (549)
Q Consensus 113 LLq-sdd~~E~~~v~~aL~sllk~d-~k-----~tL~~lf~qI 148 (549)
+|. +.++.....+-.+|..|-..+ .+ +.+..|...+
T Consensus 94 lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 94 LLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 999 777777777777776665431 11 4455555555
No 72
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=90.01 E-value=10 Score=43.69 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=63.0
Q ss_pred HhhhhHH---hhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCcc------------chhhHHHHHHHHHh
Q 008918 51 AAQLIPR---FFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE------------YLSKIVDILVQLLA 115 (549)
Q Consensus 51 aaQfI~k---ffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e------------~~~riaDVL~QLLq 115 (549)
+...+.+ ||+.-|+....+++.+++...|.++.||..|...|-.||++-+. |+.-+.+.|.+++.
T Consensus 520 ~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~ 599 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA 599 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH
Confidence 3345554 45566788899999999999998999999999999999865443 34445555566666
Q ss_pred hchhHHHHHHHHHHHHHHhhch
Q 008918 116 AEEIVERDAVHKALMSLLRQDV 137 (549)
Q Consensus 116 sdd~~E~~~v~~aL~sllk~d~ 137 (549)
.-+..+...+=.|+..++..-+
T Consensus 600 ~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 600 DLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCC
T ss_pred hCCHHHHHHHHHHHHHHHHcCC
Confidence 6566667777777777776544
No 73
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=89.71 E-value=35 Score=39.61 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=56.0
Q ss_pred cCCHHHHHHHhhhhHHhhccC---ccchHHHHHHhhh--hccccchhHHHHHhhhcccccccCccchhh
Q 008918 42 KTSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLD--LIEEEELGVRVQAIRGLPLFCKDTPEYLSK 105 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~F---P~L~e~Ai~a~lD--LcEDed~~IR~qAIk~Lp~lck~~~e~~~r 105 (549)
-.++.+...+...|.||.+.| |++-..+++.+++ -..+.++.||..|...+-.||++.+.++.-
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~ 574 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN 574 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh
Confidence 477999999999999987776 7888999999999 888999999999999999999887766544
No 74
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=89.54 E-value=11 Score=43.82 Aligned_cols=280 Identities=15% Similarity=0.171 Sum_probs=131.0
Q ss_pred HHHHhhhhhhcccc-ccChhhHHHH------------HHHhc-C-CHHHHHHHhhhh---HHhhccCccc----------
Q 008918 14 LYEFGERLNEAKDK-SQNVKDYEGI------------IEAAK-T-SLKAKQLAAQLI---PRFFKFFPDL---------- 65 (549)
Q Consensus 14 LY~~~~~L~~akd~-~~~~~~Y~~I------------l~~~k-g-~~k~K~LaaQfI---~kffk~FP~L---------- 65 (549)
||+.-|.|-.+-.. .+....|... +...+ + .... .+.+.| ....|-|++.
T Consensus 619 L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~ 696 (980)
T 3ibv_A 619 LFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLAS 696 (980)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH--HHHHHHHHHHHHhccCCcccCCCCcHHHH
Confidence 89999999887543 2222233222 22222 2 2222 223333 6666677654
Q ss_pred hHHHHHHhhhhcc--ccchhHHHHHhhhccccc----ccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 66 SSRAVDAHLDLIE--EEELGVRVQAIRGLPLFC----KDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 66 ~e~Ai~a~lDLcE--Ded~~IR~qAIk~Lp~lc----k~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
-.++...++..++ -.+..||-.+.+.+-.+- .+--.+++++++.|.+-+...+-++.--+-+-|+.-|+.+-..
T Consensus 697 f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~ 776 (980)
T 3ibv_A 697 FNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMME 776 (980)
T ss_dssp HHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2267777777777 667788877776665552 2233567777777776666677788888888888888888666
Q ss_pred HHHHHHHhhhcC------CCCCChHHHH------HHHHHHHHhhcc-cchhhhcCChHHHHHHHHHHHHHhc------cc
Q 008918 140 SLTALFKHIGSV------DEPSTDEFIR------EKVLSFIRDKVF-PLKAELLKPQEEMERHITDLIKKSL------ED 200 (549)
Q Consensus 140 tL~~lf~qI~~~------~e~~~eE~vR------Er~l~Fl~~kl~-~l~~e~~~~~eE~Ee~i~~~ikKvL------~d 200 (549)
.|..+|..+... ..+.++|.+| +--+.|+..-+. .+.+-++ ++....++-..+..++ .|
T Consensus 777 ~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~--s~~n~~~l~~~l~~l~~~a~~~~d 854 (980)
T 3ibv_A 777 ITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILF--TEENQVYFDPLINSILHFANLVGE 854 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGG--SHHHHTTHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhc--CCcchHHHHHHHHHHHHHhccCCC
Confidence 665555443321 2233334444 444567776554 2333333 2222222222222222 23
Q ss_pred ccHHHHHHHHHHHhh-ccccCCCC-chhHHHHHHHHHHHh---hhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhh
Q 008918 201 VTGAEFRMFMDFLKS-LSLFGEKA-PTERMKELIGIIEGQ---ADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSK 275 (549)
Q Consensus 201 VT~~EF~l~m~iL~~-l~~~~t~~-~~gr~qeLv~~i~eq---a~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~ 275 (549)
.+..- +-+.+|.. .+.++... .+|=-+=+++ +.-- +=++..||..|..+.==+-++...-.-++.+. +..
T Consensus 855 ~~~~K--~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~--g~~ 929 (980)
T 3ibv_A 855 PATQK--SSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKL--GDI 929 (980)
T ss_dssp CHHHH--HHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHH--HHH
T ss_pred hHHHH--HHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhc--CHH
Confidence 32221 12222222 12222111 2221111344 3222 23778899999875422212111111112222 368
Q ss_pred HHHHHHhhhcccCCCCChhhhhhHHHHH
Q 008918 276 FLNYLNKHIIPVFDKLPEERKLDLLKAL 303 (549)
Q Consensus 276 f~~y~~~~vlP~l~~l~e~~kl~lLK~l 303 (549)
|++|+-+..+|.++ +|++.-.++.+.|
T Consensus 930 ~~~~l~~~~lp~~~-~~~~~~~~~~~~l 956 (980)
T 3ibv_A 930 YKSYLVTVYFPTVN-FPDVMASEYLQAL 956 (980)
T ss_dssp HHHHHHHTTTTC-----CCHHHHHHHC-
T ss_pred HHHHHHHhcCCcCC-CCHHHHHHHHHHH
Confidence 99999999999775 5655555666655
No 75
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.28 E-value=37 Score=38.07 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhhHHhhccC---ccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc----hhhHHHHHHHHHh
Q 008918 43 TSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLA 115 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~----~~riaDVL~QLLq 115 (549)
+++.++.=+..+|.+|...+ |+.-..+++.++....| +.||..|...|-.||++-++. ++.+.+.|.++++
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 56777777888888776543 45566677777766644 678888888888888655443 3444444555565
Q ss_pred hc--hhHHHHHHHHHHHHHHhh
Q 008918 116 AE--EIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 116 sd--d~~E~~~v~~aL~sllk~ 135 (549)
.. +..+...+=.|+..++..
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCChHHHHHHHHHHHHHHhc
Confidence 42 345666666666666653
No 76
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=84.95 E-value=6.3 Score=46.12 Aligned_cols=290 Identities=14% Similarity=0.199 Sum_probs=148.1
Q ss_pred HHHHHhhhhcc-----ccchhHHH---HHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 68 RAVDAHLDLIE-----EEELGVRV---QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 68 ~Ai~a~lDLcE-----Ded~~IR~---qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
++|.-++.||+ |.-+.||- ..|-..+.+...+|+|++.+...|.+-|..+.+....++-.||+.|-..- +.
T Consensus 495 ~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c-~~ 573 (1023)
T 4hat_C 495 TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC-KY 573 (1023)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH-TH
T ss_pred HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH-HH
Confidence 45566777887 34444442 44566667778889999888888888887777878888888888877642 22
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHH-HHHHHHHHhhccc
Q 008918 140 SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE-FRMFMDFLKSLSL 218 (549)
Q Consensus 140 tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~E-F~l~m~iL~~l~~ 218 (549)
.|.. . .+.+.+.-=+-++.++..-.. .+ ..+....+.+.|-.+++.++.++ -..+++.|-....
T Consensus 574 ~l~~----~----~~~e~~p~~~~il~~l~~~~~-----~l--~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~ 638 (1023)
T 4hat_C 574 HFVI----Q----QPRESEPFIQTIIRDIQKTTA-----DL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN 638 (1023)
T ss_dssp HHHS----C----CTTCSSCHHHHHHHTHHHHHT-----TS--CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHH
T ss_pred Hhhc----c----CCCCCchhHHHHHHHHHHHHH-----hC--CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHH
Confidence 2211 0 001101111112222211111 12 23455677777777777776555 3334433332111
Q ss_pred cCCCCchhHHHHHHHHHHHhhhccccCC-CCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCC------
Q 008918 219 FGEKAPTERMKELIGIIEGQADLDAQFN-VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL------ 291 (549)
Q Consensus 219 ~~t~~~~gr~qeLv~~i~eqa~Ld~~f~-~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l------ 291 (549)
.+.+++++ ++ .+..+ -.|+|.+++++..++.--..++. -.+.|+.|+. .|+|.+-++
T Consensus 639 -------~~~~~l~~----~~--~~~~~~~~d~~~~~~l~~il~~~~~v~~~--lg~~f~~~~~-~i~~~~l~~y~~~s~ 702 (1023)
T 4hat_C 639 -------MAWDTIVE----QS--TANPTLLLDSETVKIIANIIKTNVAVCTS--MGADFYPQLG-HIYYNMLQLYRAVSS 702 (1023)
T ss_dssp -------HHHHHHHH----HH--HHCTTGGGCHHHHHHHHHHHHHHHHHHHH--HGGGGHHHHH-HHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHH----HH--hcCchhhcCHHHHHHHHHHHHHHHHHHHH--hcHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 12233333 22 12222 24677888888766632222221 1245555443 344422111
Q ss_pred ----------------Ch-----hhhhhHHHHHHHhCCCC-Chhh-hhhhHHHHHHHh--hhcCCCCCCCCccchHHHHH
Q 008918 292 ----------------PE-----ERKLDLLKALAEISPYT-TPQD-SRQILPSVAVLL--KYMPLRKTGGEEMNFTYVEC 346 (549)
Q Consensus 292 ----------------~e-----~~kl~lLK~lAE~s~~~-~~~d-a~~~l~~i~~~L--~ymP~~~~~~~~l~fS~vEc 346 (549)
|. ..|-++||++--...-+ +.+. ...++|++++.+ .|...+|..-. =|
T Consensus 703 ~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~-------~~ 775 (1023)
T 4hat_C 703 MISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD-------AE 775 (1023)
T ss_dssp HHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCC-------HH
T ss_pred HHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhcc-------HH
Confidence 11 12334555544433323 3444 677899998776 78876553111 25
Q ss_pred HHHHHHHhhhcCchh--------hhhc--cccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHH
Q 008918 347 LLYTFHHLAHKAPNA--------TNSL--CGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLT 401 (549)
Q Consensus 347 LLyafh~L~~K~P~~--------l~~l--cg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~ 401 (549)
.||.+..+..|..+. +..+ |-+..++. +-+|+++.-.+|-.=|+.+...|
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~-----~~~~~Pe~r~~ff~ll~~~~~~~ 835 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK-----DFTEYPEHRVEFYKLLKVINEKS 835 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-----CSSSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-----ccccChHHHHHHHHHHHHHHHHC
Confidence 677777766665432 2222 22223331 12477887777766555554433
No 77
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=82.95 E-value=3.2 Score=40.47 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHHHHhc-CCH--HHHHHHhhhhHHhhccCccch-----HHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh-
Q 008918 35 EGIIEAAK-TSL--KAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (549)
Q Consensus 35 ~~Il~~~k-g~~--k~K~LaaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r- 105 (549)
..++.... +++ +++..|+..|..--...|+.. .-+|-.+++|...+++.|+.+|...|-.|+.+++++-..
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444 555 677777777766555555543 347888999999999999999999999999876665333
Q ss_pred ----HHHHHHHHHhh-chhHHHHHHHHHHHHH
Q 008918 106 ----IVDILVQLLAA-EEIVERDAVHKALMSL 132 (549)
Q Consensus 106 ----iaDVL~QLLqs-dd~~E~~~v~~aL~sl 132 (549)
....|++||.+ .+......+--+|-.|
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 46679999974 4554444443333333
No 78
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=82.75 E-value=22 Score=40.82 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=86.8
Q ss_pred HHHHHHHh-cCCHHHHHHHhhhhHHhhccC-ccc------hHHHHHHhhhhcccc-chhHHHHHhhhcccccccCccchh
Q 008918 34 YEGIIEAA-KTSLKAKQLAAQLIPRFFKFF-PDL------SSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYLS 104 (549)
Q Consensus 34 Y~~Il~~~-kg~~k~K~LaaQfI~kffk~F-P~L------~e~Ai~a~lDLcEDe-d~~IR~qAIk~Lp~lck~~~e~~~ 104 (549)
..-++... .|++..|+.||+-|.+.-.+- |+. ...||-.+++|+..+ +...+..|..+|-.|+..+++...
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444444 488999999999999875432 222 245899999999854 444567899999999987766654
Q ss_pred h-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 105 K-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 105 r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~--------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
+ ..+.|.+||.++++.....+-.+|..|...+. .+.+..|..-+. ++++.+|+.+...|+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-----s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE-----DEDEETATACAGALA 690 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG-----CSSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 4 45689999999888888777777777665321 123333333333 455667665444433
No 79
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=81.47 E-value=6.3 Score=37.99 Aligned_cols=127 Identities=14% Similarity=0.245 Sum_probs=84.5
Q ss_pred CCHHHHHHHhhhhHHhhccCc----------cchHHHHHHhhhh-ccccchhHHHHHhhhcccccccCccchhhHHHHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFFP----------DLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILV 111 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP----------~L~e~Ai~a~lDL-cEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~ 111 (549)
....+-..|.+.+..|.+.+. ......+..+++= +.|....+|..|+..|-.+|... -....+.+.|.
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~ 145 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVI 145 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHG
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 445666677777777766443 2345556667753 57888999999999888876321 12456778888
Q ss_pred HHHhhchhHHHHHHHHHHHHHHhh------chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhh
Q 008918 112 QLLAAEEIVERDAVHKALMSLLRQ------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK 171 (549)
Q Consensus 112 QLLqsdd~~E~~~v~~aL~sllk~------d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~k 171 (549)
..|+.-.|..+..+-..|..++.. +++..+..++..+..- -.+.+..||+-+++++.+=
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHH
Confidence 888888887777777777777654 4666666554443210 0156678999999988763
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=80.78 E-value=1.5 Score=44.93 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=52.9
Q ss_pred HHHHhhhhccccchhHHHHHhhhcccccccCccchhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008918 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (549)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k 138 (549)
+|..+++|..+.+..+++.|...|..+|..+++....+ ...|++||.+.++.....+-.+|..|...+|.
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 56778888888888888888888888887666665443 56788888888777777777777777766543
No 81
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=80.28 E-value=48 Score=34.97 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=49.6
Q ss_pred HHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHH
Q 008918 276 FLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTF 351 (549)
Q Consensus 276 f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyaf 351 (549)
.+.++. +..|+ ....+++-+|..+.++...+.+.+..++..++|..| ..+-+ -+|...|..||.+
T Consensus 297 vi~~LL-k~WP~---tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S-------~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALL-KYWPK---THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS-------PHFQVAERALYYW 362 (392)
T ss_dssp HHHHHH-HSSCS---SCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-------SSHHHHHHHHGGG
T ss_pred HHHHHH-HhCCC---CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC-------CcHHHHHHHHHHh
Confidence 333433 44454 334677888999999999999999999999999999 98843 6888889888765
No 82
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=79.94 E-value=3.2 Score=40.05 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=73.4
Q ss_pred HHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhccccc-ccCccchhhHHHHHHHHHhhchhHHHH
Q 008918 45 LKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFC-KDTPEYLSKIVDILVQLLAAEEIVERD 123 (549)
Q Consensus 45 ~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lc-k~~~e~~~riaDVL~QLLqsdd~~E~~ 123 (549)
+-.=.+|..++.+|++..|+. +..-+.....|+++=+|..||=.+-..- +.+ ......++..++.+++.=..-
T Consensus 111 d~~D~~a~~~~g~~~~~~p~~---~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d---~~~~~~~i~~~~~d~~~yV~k 184 (232)
T 3jxy_A 111 DSVDSIVPTFLGDIFLKHPEL---ISAYIPKWIASDNIWLQRAAILFQLKYKQKMD---EELLFWIIGQLHSSKEFFIQK 184 (232)
T ss_dssp HHHHHHTTTHHHHHHHHCGGG---GGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCC---HHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHhhHHHHHHHHHHCHHH---HHHHHHHHhcCCchHHHHHHHHHHHHHHhCCC---HHHHHHHHHHhcCCHHHHHHH
Confidence 334456778888999998872 2345677889999999999987764433 233 335666777888999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHh
Q 008918 124 AVHKALMSLLRQDVKASLTALFKH 147 (549)
Q Consensus 124 ~v~~aL~sllk~d~k~tL~~lf~q 147 (549)
+|-++|.++.+.+|..++.-|=.|
T Consensus 185 AvgW~Lr~~~k~~p~~v~~fl~~~ 208 (232)
T 3jxy_A 185 AIGWVLREYAKTNPDVVWEYVQNN 208 (232)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHC
Confidence 999999999999999877765554
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=79.74 E-value=60 Score=35.38 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHh
Q 008918 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (549)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~q 147 (549)
++.-.+++...- +....+=|=+-||.+.|.-|++-.+-.|.+.-|.-+||...+..+=+.|-.+-+-+--.-++.++.|
T Consensus 29 ~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~Q 107 (507)
T 3u0r_A 29 DAYQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQ 107 (507)
T ss_dssp HHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHH
Confidence 345556665554 4667777778899999999999999999999999999999998888888888887777888899999
Q ss_pred hhcCCCCCChHHHHHHHHHHHHh
Q 008918 148 IGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 148 I~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+...+++.+=+.|+.-++.+++.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKM 130 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhc
Confidence 99655555444578777777664
No 84
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.47 E-value=32 Score=40.68 Aligned_cols=289 Identities=15% Similarity=0.189 Sum_probs=130.9
Q ss_pred HHHHHhhhhcccc---chhHHHH-----HhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 68 RAVDAHLDLIEEE---ELGVRVQ-----AIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 68 ~Ai~a~lDLcEDe---d~~IR~q-----AIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
+.|.-++.|||.. |..++++ .+-..|.+-+.+|+|+.-+..-|...+++..+...+++-.||..+-..=.+
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~- 599 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR- 599 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG-
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-
Confidence 3455666677632 3232222 233455555667777777666666666666666666666665554432111
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHH-HHHHHHHHhhccc
Q 008918 140 SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE-FRMFMDFLKSLSL 218 (549)
Q Consensus 140 tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~E-F~l~m~iL~~l~~ 218 (549)
.| ... .+.+.+..=+-++.++..-...+ ..+....+.+.|--++..++.++ -..+++.|-..+.
T Consensus 600 ~l-------v~~-~~~e~~p~i~~il~~~~~~~~~l-------~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~ 664 (1073)
T 3gjx_A 600 HF-------VQV-QVGEVMPFIDEILNNINTIICDL-------QPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPN 664 (1073)
T ss_dssp GG-------TSC-CTTCSSCHHHHHHTSHHHHHTTC-------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHH
T ss_pred HH-------hhc-cccccchHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 00 000 00111111122222222211111 22344445555555666565544 2334443332222
Q ss_pred cCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhccc-------CCC-
Q 008918 219 FGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPV-------FDK- 290 (549)
Q Consensus 219 ~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~-------l~~- 290 (549)
.+.+++++-.....+ ...|++.++++..-++.--...+ .-++.|+.++.. |+|. +++
T Consensus 665 -------~~w~~l~~~~~~~~~-----~~~d~~~i~~l~~il~~n~~v~~--~~g~~f~~~~~~-i~~~~l~~y~~~s~~ 729 (1073)
T 3gjx_A 665 -------QVWDSIIQQATKNVD-----ILKDPETVKQLGSILKTNVRACK--AVGHPFVIQLGR-IYLDMLNVYKCLSEN 729 (1073)
T ss_dssp -------HHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHHHHHHH--HHCGGGHHHHHH-HHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhcCch-----hccChHHHHHHHHHHhhhHHHHh--hcchhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 122323322111111 12377778888776663211111 112455555542 3331 111
Q ss_pred --------------CCh-----hhhhhHHHHHHHhCCCC-Chhh-hhhhHHHHHHHh--hhcCCCCCC-CCccchHHHHH
Q 008918 291 --------------LPE-----ERKLDLLKALAEISPYT-TPQD-SRQILPSVAVLL--KYMPLRKTG-GEEMNFTYVEC 346 (549)
Q Consensus 291 --------------l~e-----~~kl~lLK~lAE~s~~~-~~~d-a~~~l~~i~~~L--~ymP~~~~~-~~~l~fS~vEc 346 (549)
-|. ..|-++||++--....+ +.+. +..++|++++.+ +|.-..|.. ++ |
T Consensus 730 i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~--------e 801 (1073)
T 3gjx_A 730 ISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREP--------E 801 (1073)
T ss_dssp HHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCT--------H
T ss_pred HHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccH--------H
Confidence 011 13556667776654444 3333 788899998777 677543321 11 4
Q ss_pred HHHHHHHhhhcC--------chhhhhccc--cccccCCCCCCCCCChhhhhHHHHHHHHHHHHH
Q 008918 347 LLYTFHHLAHKA--------PNATNSLCG--YKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 400 (549)
Q Consensus 347 LLyafh~L~~K~--------P~~l~~lcg--~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~ 400 (549)
.|+.+..+..|. |..|..+|. ...++. +-+|++|.-.+|-.=|+.+...
T Consensus 802 vL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~-----~f~~~Pe~r~~ff~ll~~~~~~ 860 (1073)
T 3gjx_A 802 VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK-----DFEEYPEHRTNFFLLLQAVNSH 860 (1073)
T ss_dssp HHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSS-----CSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhC-----CcccCcHHHHHHHHHHHHHHHH
Confidence 555555555552 223333221 122331 2257788877777666555444
No 85
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=79.12 E-value=4.1 Score=44.95 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc-----hHHHHHHhhhhccccchhHHHHHhhhccccccc-Cccc
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-TPEY 102 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~-~~e~ 102 (549)
+..+-..++.... +++..+.-||..|...-...++. ..-+|-.++.|....++.|+.+|+..|-.||.. ++++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 3345566666555 88999999999998887777765 334788999999999999999999999999974 4555
Q ss_pred hhh-----HHHHHHHHHhhc-hhHHHHHHHHHHHHHHh
Q 008918 103 LSK-----IVDILVQLLAAE-EIVERDAVHKALMSLLR 134 (549)
Q Consensus 103 ~~r-----iaDVL~QLLqsd-d~~E~~~v~~aL~sllk 134 (549)
-.. ....|++||.+. +......+..+|..|-.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 333 567899999984 44445666666666644
No 86
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=78.80 E-value=3 Score=47.85 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=31.3
Q ss_pred HHHHhhhhccccchhHHHHHhhhcccccccCccchhhH------HHHHHHHHhhchhHHHHHHHHHHHHHHh
Q 008918 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI------VDILVQLLAAEEIVERDAVHKALMSLLR 134 (549)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ri------aDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (549)
++..+++|..++++.||.+|...|-.++... +...++ ..+|++||.+++......+-.+|..|-.
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 4455555555555555555555555554422 222222 2245555555555555444455544443
No 87
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.69 E-value=78 Score=36.99 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=59.5
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhh---
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--- 105 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r--- 105 (549)
+.+....++...- ++...++-|-+++-.|-++ |+--.-+. .+++ ...++.||-.|..-|-...+..|.-++.
T Consensus 14 dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-p~aw~~~~-~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~ 89 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-PDAWQKAD-QILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-TTGGGGHH-HHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-ccHHHHHH-HHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 4556666666443 5566777788888766554 66533332 2322 2456788888887777776655544332
Q ss_pred --HHHHHHHHHhhc---------hhHHHHHHHHHHHHHHhhc
Q 008918 106 --IVDILVQLLAAE---------EIVERDAVHKALMSLLRQD 136 (549)
Q Consensus 106 --iaDVL~QLLqsd---------d~~E~~~v~~aL~sllk~d 136 (549)
+=+-|.+++... ++.-++.+..+|..+++.+
T Consensus 90 ~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~ 131 (1023)
T 4hat_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh
Confidence 445555555442 1233444566666777766
No 88
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=76.34 E-value=29 Score=35.97 Aligned_cols=157 Identities=19% Similarity=0.181 Sum_probs=94.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhHHhhccCccc-----hHHHHHHhhhhccccchhHHHHHhhhccccccc---------
Q 008918 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--------- 98 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~--------- 98 (549)
=..||+.-. ++.+++|-|=.-+.++|+.=+++ ...-++++++.+++.+..+..-|+++|-+|=-.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 345555444 77888988888888888877777 456788999999999999999998888887321
Q ss_pred CccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---chHHHHHHHHHhhhcCCCCCChHHH-HHHHHHHHHhhccc
Q 008918 99 TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DVKASLTALFKHIGSVDEPSTDEFI-REKVLSFIRDKVFP 174 (549)
Q Consensus 99 ~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---d~k~tL~~lf~qI~~~~e~~~eE~v-REr~l~Fl~~kl~~ 174 (549)
++++|. -|+.++.+ ..+.+++.||.=|+.+ ++.+ ..++.+-.+ .+ +++ ...+
T Consensus 200 ~~~fI~----~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~--~~lv~~av~--------~v~~~~-------~~~p 255 (339)
T 3dad_A 200 HSDTIQ----WLYTLCAS---LSRLVVKTALKLLLVFVEYSENN--APLFIRAVN--------SVASTT-------GAPP 255 (339)
T ss_dssp CHHHHH----HHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHH--------HHHHHH-------CCCT
T ss_pred CHHHHH----HHHHHHcC---ccHHHHHHHHHHHHHHHccCccc--chHHHHHHH--------Hhhhcc-------CCCc
Confidence 444444 44556664 4466676666555443 2111 111111110 00 111 0011
Q ss_pred chh--hhc----CChHHHHHHHHHHHHHhcccccHHH-HHHHHHHHh
Q 008918 175 LKA--ELL----KPQEEMERHITDLIKKSLEDVTGAE-FRMFMDFLK 214 (549)
Q Consensus 175 l~~--e~~----~~~eE~Ee~i~~~ikKvL~dVT~~E-F~l~m~iL~ 214 (549)
+.. .++ ....|+.-+-+.+|.+.|..++.++ |.-+.+-|.
T Consensus 256 ~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le 302 (339)
T 3dad_A 256 WANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALE 302 (339)
T ss_dssp THHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 111 111 2366888888899999888877656 654444443
No 89
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=76.33 E-value=43 Score=35.88 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=46.4
Q ss_pred cCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHH
Q 008918 287 VFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTF 351 (549)
Q Consensus 287 ~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyaf 351 (549)
+|=......++-+|..+.++...+.+.+...+..++|..| ..+-+ .+|...|.-||.+
T Consensus 292 ~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S-------~hfqVAErAL~~w 350 (449)
T 2npp_B 292 YWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS-------PHFQVAERALYYW 350 (449)
T ss_dssp TCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC-------SCHHHHHHHHGGG
T ss_pred hCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHH
Confidence 3333335677889999999999999999999999999999 99843 6788888877765
No 90
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=75.95 E-value=9.6 Score=36.33 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=68.7
Q ss_pred hhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 008918 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (549)
Q Consensus 53 QfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sl 132 (549)
..+.+|++..|+. ...-+...+.|++.=+|..||-.+-...+. .+...+-.++..++.+++-=..-+|-++|.++
T Consensus 112 ~~~~~~~~~~~~~---~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~--~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~ 186 (220)
T 2b6c_A 112 KFFGSWVALHLTE---LPTIFALFYGAENFWNRRVALNLQLMLKEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQY 186 (220)
T ss_dssp HHHHHHHHHSGGG---HHHHHHHHTTCSSHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 3467787777764 234467899999999999999877555332 45566777888888899999999999999999
Q ss_pred HhhchHHHHHHH
Q 008918 133 LRQDVKASLTAL 144 (549)
Q Consensus 133 lk~d~k~tL~~l 144 (549)
.+.||..++.=|
T Consensus 187 ~k~~~~~v~~fl 198 (220)
T 2b6c_A 187 SKTNPQWVEELM 198 (220)
T ss_dssp TTTCHHHHHHHH
T ss_pred HhhCHHHHHHHH
Confidence 999999888776
No 91
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=75.62 E-value=86 Score=33.14 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=50.5
Q ss_pred hHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHH
Q 008918 275 KFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTF 351 (549)
Q Consensus 275 ~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyaf 351 (549)
..+.|+. +..|+ .....++-+|..+.++...+.+.+...+..++|..+ ..+-+ -+|...|.-||.+
T Consensus 251 ~vi~~LL-k~WP~---tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S-------~hfqVAErAL~~w 317 (403)
T 3fga_B 251 PVVMALL-KYWPK---THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS-------PHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHH-HTCCS---SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC-------SCHHHHHHHHGGG
T ss_pred HHHHHHH-HhCCC---CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHh
Confidence 3444443 44454 335678889999999999999999999999999999 88843 5888888887765
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=74.79 E-value=11 Score=38.90 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=69.1
Q ss_pred ccCccch-HHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008918 60 KFFPDLS-SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (549)
Q Consensus 60 k~FP~L~-e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k 138 (549)
.+||.+. ...+-..++++--.|..+|+=.+=.+-.+++...|-+ =++--|.+=|++.++-.+-.+=.+|..+..-+--
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~ 137 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML 137 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH
Confidence 5777763 4666677778888888888887777777777655544 6777777777777766555555555555544444
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcccchhhh
Q 008918 139 ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAEL 179 (549)
Q Consensus 139 ~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~~l~~e~ 179 (549)
..+..-+.+... +.+.-||..++-- ..||.+.-+++
T Consensus 138 ~~l~~~lk~~L~----d~~pyVRk~A~l~-~~kL~~~~pe~ 173 (355)
T 3tjz_B 138 QAIERYMKQAIV----DKVPSVSSSALVS-SLHLLKCSFDV 173 (355)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHH-HHHHTTTCHHH
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHHH-HHHHhccCHHH
Confidence 455555555553 3334566544422 23555553333
No 93
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=74.76 E-value=2.5 Score=45.07 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=66.3
Q ss_pred HHHHHhhhhH---HhhccCccchH-----HHHHHhhhhccccchhHHHHHhhhcccccccCccchhhH-----HHHHHHH
Q 008918 47 AKQLAAQLIP---RFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQL 113 (549)
Q Consensus 47 ~K~LaaQfI~---kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ri-----aDVL~QL 113 (549)
.+.-|+..|. .|...-|+... -+|..++.|..+.+..|+++|...|..+|..+++....+ ...|++|
T Consensus 350 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 5555555443 33334555433 346678888888888999999999999997677765544 5678999
Q ss_pred HhhchhHHHHHHHHHHHHHHhhch
Q 008918 114 LAAEEIVERDAVHKALMSLLRQDV 137 (549)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~d~ 137 (549)
|.+.++.....+-.+|..|+..+|
T Consensus 430 L~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HhCCCHHHHHHHHHHHHHHHcCCH
Confidence 998888888888888888887665
No 94
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=73.49 E-value=13 Score=38.60 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=65.5
Q ss_pred HHHHhhhhccccchhHHHHHhhhcccccccCccchhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch--HH--
Q 008918 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--KA-- 139 (549)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~--k~-- 139 (549)
.|..++.+...+|+.++..|...|-.+|.++++.-.. +...|+++|.++++.....+-.+|..|...++ +.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3566777888888889999999999999766543212 56789999999888888888888888876422 22
Q ss_pred ----HHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 140 ----SLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 140 ----tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
.+..|...+.. ++++.+++.+..-|.
T Consensus 83 ~~~G~i~~Lv~lL~~----~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 83 RRQNGIREAVSLLRR----TGNAEIQKQLTGLLW 112 (457)
T ss_dssp HHTTCHHHHHHHHTT----CCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhh----CCCHHHHHHHHHHHH
Confidence 23344444431 335567766654443
No 95
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=73.01 E-value=1.6 Score=42.90 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=42.6
Q ss_pred hhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHH
Q 008918 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKA 128 (549)
Q Consensus 53 QfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~a 128 (549)
.=|-+||..-|++. -.||.|+++.||.+|.+.|| .++|.+|++++++.++.++-.+
T Consensus 42 ~ri~~~~~~~p~l~-------~~ll~d~~~~VR~~AA~~l~-------------~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 42 RQIDRFFRNNPHLA-------VQYLADPFWERRAIAVRYSP-------------VEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp HHHHHHHHHCGGGG-------GGGTTCSSHHHHHHHHTTSC-------------GGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHH-------HHHhcCCCHHHHHHHHHhCC-------------HHHHHHHccCcCHHHHHHHHHH
Confidence 34788888888773 35678999999999999875 2357778888888887777655
No 96
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=72.69 E-value=11 Score=36.71 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHhhhhccccch--hHHHHHhhhcccccccCccchhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhc
Q 008918 70 VDAHLDLIEEEEL--GVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQD 136 (549)
Q Consensus 70 i~a~lDLcEDed~--~IR~qAIk~Lp~lck~~~e~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~d 136 (549)
|..++.+...+|+ +++..|...|-.+|..+++.... ..-.|++||.++++.....+-.+|..|-.-+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 5567777776776 89999999999999777665444 4567999999988877777777777776543
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.66 E-value=9.1 Score=44.77 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=64.2
Q ss_pred cchHHHHHHhhhhcc-ccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHH
Q 008918 64 DLSSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLT 142 (549)
Q Consensus 64 ~L~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~ 142 (549)
.....||..++..|. |.+..||..|+-+|-.++-.+++.++|+.+. |+++.++..+-.+--||=-+---+|....-
T Consensus 573 TGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~---L~~~~d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL---LSKSHNAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp SCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT---GGGCSCHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhccCCCcHHHH
Confidence 345667888888876 6667789999999988877777776665554 445788888888887776554445543333
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHH
Q 008918 143 ALFKHIGSVDEPSTDEFIREKVLS 166 (549)
Q Consensus 143 ~lf~qI~~~~e~~~eE~vREr~l~ 166 (549)
.+++.+.. ..++.||.-++-
T Consensus 650 d~L~~L~~----D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 650 DVLDPLTK----DPVDFVRQAAMI 669 (963)
T ss_dssp HHHHHHHT----CSSHHHHHHHHH
T ss_pred HHHHHHcc----CCCHHHHHHHHH
Confidence 35555542 456677766553
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.84 E-value=70 Score=36.75 Aligned_cols=245 Identities=11% Similarity=0.077 Sum_probs=124.5
Q ss_pred HHHHHHhhhhccccchhHHHHHhhhcccccc----------cCccchhhHHHHHHHHHhhc--------hh---------
Q 008918 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCK----------DTPEYLSKIVDILVQLLAAE--------EI--------- 119 (549)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck----------~~~e~~~riaDVL~QLLqsd--------d~--------- 119 (549)
...++.++.+...+|..|+..|+.=+..+|. --..+++++.+++.+.|.-+ |+
T Consensus 343 ~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~ 422 (1049)
T 3m1i_C 343 LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVK 422 (1049)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhc
Confidence 3456777777777788888888865555554 22345777777777665321 11
Q ss_pred -----HHHHHHHHHHHHHHhhchHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHH-HHH
Q 008918 120 -----VERDAVHKALMSLLRQDVKASLTALFKHIGSV-DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH-ITD 192 (549)
Q Consensus 120 -----~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~-~e~~~eE~vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~-i~~ 192 (549)
..+..+...|..+....+..++..++..+... ..+..+=..||-++--+. .+. +.+ .++.+.. +..
T Consensus 423 d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~alg----sia-~~~--~~~~e~~~l~~ 495 (1049)
T 3m1i_C 423 ESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIG----SIS-GTM--SEDTEKRFVVT 495 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH----HTT-TSS--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HHh-ccc--CchhhHHHHHH
Confidence 22456888899999999888888777665421 001122234665443333 111 112 1232322 222
Q ss_pred HHHHhcc--cc-cH-HH-H--H-HHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCCh-------HHHHHHH
Q 008918 193 LIKKSLE--DV-TG-AE-F--R-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDA-------DHIDRLI 257 (549)
Q Consensus 193 ~ikKvL~--dV-T~-~E-F--~-l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~-------e~idRli 257 (549)
.+.-.+. +. .+ .. . . .+|.++.....+-...| ..+..++..+.+- |.. .++ ..+.+|.
T Consensus 496 v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~~vl~~ll~~--l~~----~~~~V~~~A~~al~~l~ 568 (1049)
T 3m1i_C 496 VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRTVILKLFEF--MHE----THEGVQDMACDTFIKIV 568 (1049)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHHHHHHHHHHH--TTS----SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHH--hcC----CCHHHHHHHHHHHHHHH
Confidence 2222211 11 00 11 1 1 24555554444311122 2234444444431 221 122 1333443
Q ss_pred HHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCh-hh----hhhhHHHHHHHh
Q 008918 258 SCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP-QD----SRQILPSVAVLL 326 (549)
Q Consensus 258 ~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~-~d----a~~~l~~i~~~L 326 (549)
.-....+-- .......+|+.-+.+++...+++++.+....+.+.++.++...+. +. ...+++++.+.+
T Consensus 569 ~~~~~~l~~-~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~ 641 (1049)
T 3m1i_C 569 QKCKYHFVI-QQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAW 641 (1049)
T ss_dssp HHHTHHHHS-CCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhc-ccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 322211100 111112488888888888888888777788888998888665552 32 344555565555
No 99
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=71.46 E-value=11 Score=38.52 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=59.1
Q ss_pred HHHHHHhhhhHHhhccCccch-----HHHHHHhhhhcc-----------ccchhHHHHHhhhcccccccCccchhh----
Q 008918 46 KAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIE-----------EEELGVRVQAIRGLPLFCKDTPEYLSK---- 105 (549)
Q Consensus 46 k~K~LaaQfI~kffk~FP~L~-----e~Ai~a~lDLcE-----------Ded~~IR~qAIk~Lp~lck~~~e~~~r---- 105 (549)
+.+--|+-.|.+--.+ |+.. .-++.+++.|.. ...+.+|.+|...|-.||.++.++-..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4444455555555443 5442 245666777763 234779999999999999776544222
Q ss_pred --HHHHHHHHHhhchhHHHHHHHHHHHHHHh
Q 008918 106 --IVDILVQLLAAEEIVERDAVHKALMSLLR 134 (549)
Q Consensus 106 --iaDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (549)
....|++||.++++.....+-.+|..|-.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~ 156 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSW 156 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 26789999999888877777778777755
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=71.10 E-value=1.4e+02 Score=33.54 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccc-hHHHHHHhhhhccc--cchhHH
Q 008918 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL-SSRAVDAHLDLIEE--EELGVR 85 (549)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L-~e~Ai~a~lDLcED--ed~~IR 85 (549)
++|++| ++||++|.--.+++++-.++-..+ |.||.- ...|+..+++..++ +|..+=
T Consensus 21 etI~~L---~~Rl~~~tl~eDRR~Av~~Lk~~s------------------k~y~~~Vg~~~l~~li~~L~~d~~D~e~v 79 (651)
T 3grl_A 21 ETIQKL---CDRVASSTLLDDRRNAVRALKSLS------------------KKYRLEVGIQAMEHLIHVLQTDRSDSEII 79 (651)
T ss_dssp HHHHHH---HHHHHHCCSHHHHHHHHHHHHHTT------------------TTTTTHHHHHTHHHHHHHHHSCTTCHHHH
T ss_pred hHHHHH---HHHHhhccchhHHHHHHHHHHHHH------------------HHhHHHhhhhhHHHHHHHHhcccccHHHH
Confidence 345544 557766654334555555544443 445544 55556666665552 344444
Q ss_pred HHHhhhccc-ccccCc--------------------cchh--hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH---
Q 008918 86 VQAIRGLPL-FCKDTP--------------------EYLS--KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--- 139 (549)
Q Consensus 86 ~qAIk~Lp~-lck~~~--------------------e~~~--riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~--- 139 (549)
+.++.-|-. +|.+.. .++. ...-+|..||+++|.-.+-.+=+.|..|+...|..
T Consensus 80 ~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~ 159 (651)
T 3grl_A 80 GYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQ 159 (651)
T ss_dssp HHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 445554432 232211 1111 14445678899999988888888999999888773
Q ss_pred -------HHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 140 -------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 140 -------tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
.+..|.+-+. +.-|.+|...+-+|..
T Consensus 160 ~Il~~p~gi~~Lv~lL~-----d~rE~iRneallLL~~ 192 (651)
T 3grl_A 160 IILVSPMGVSRLMDLLA-----DSREVIRNDGVLLLQA 192 (651)
T ss_dssp HHHHSTTHHHHHHGGGG-----CSSHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHh-----CchHHHHHHHHHHHHH
Confidence 4445555554 3458899988888764
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=69.52 E-value=15 Score=36.43 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=69.6
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHH---hhchh-HHHHHHHHHHHHHHh-hchHHH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL---AAEEI-VERDAVHKALMSLLR-QDVKAS 140 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLL---qsdd~-~E~~~v~~aL~sllk-~d~k~t 140 (549)
.++-+.-..+|..|+.=+||..|+.-|-.+ . -..|+|..+. .+|+. .+++++-.++..++. .+|..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~ 140 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA 140 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 455556666777777779999999976666 2 2255665443 33333 899999999999997 899988
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 141 LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 141 L~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
+..+..|.. +++.-||.-++..++-
T Consensus 141 l~~~~~W~~-----d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 141 LPIIDEWLK-----SSNLHTRRAATEGLRI 165 (240)
T ss_dssp HHHHHHHHH-----CSSHHHHHHHHHHTCS
T ss_pred HHHHHHHhc-----CCCHHHHHHHHHhhHH
Confidence 999999998 7788899999988753
No 102
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=67.73 E-value=12 Score=39.76 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=56.6
Q ss_pred HHhhhhHHhhccCccchH-----HHHHHhhhhcc-----------ccchhHHHHHhhhcccccccCccc---hh--h-HH
Q 008918 50 LAAQLIPRFFKFFPDLSS-----RAVDAHLDLIE-----------EEELGVRVQAIRGLPLFCKDTPEY---LS--K-IV 107 (549)
Q Consensus 50 LaaQfI~kffk~FP~L~e-----~Ai~a~lDLcE-----------Ded~~IR~qAIk~Lp~lck~~~e~---~~--r-ia 107 (549)
-|+-+|.+. ...|+..+ -++..++.|.. ...+.++..|...|-.||.+++++ +. . ..
T Consensus 167 qAv~aL~nl-s~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHH-TTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHh-cCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 345555555 33355533 46667777763 245778999999999999776543 31 2 26
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHh
Q 008918 108 DILVQLLAAEEIVERDAVHKALMSLLR 134 (549)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk 134 (549)
..|++||.++++.....+-.+|..|-.
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~ 272 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSW 272 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 789999999888777777777766644
No 103
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=64.65 E-value=23 Score=41.50 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=53.1
Q ss_pred HHHHhhhhccc-------cchhHHHHHhhhcccccccCccchhhHHHHHHHHHh-hchhHHHHHHHHHHHHHHhhch-HH
Q 008918 69 AVDAHLDLIEE-------EELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA-AEEIVERDAVHKALMSLLRQDV-KA 139 (549)
Q Consensus 69 Ai~a~lDLcED-------ed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLq-sdd~~E~~~v~~aL~sllk~d~-k~ 139 (549)
+++.+..+.+. ....||++||.+|-.+.+..| .++-+||.|++. ..++.|+-++ |+..|++.+| ..
T Consensus 472 ~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~~v~~il~~i~~n~~e~~EvRia--A~~~Lm~t~P~~~ 546 (1056)
T 1lsh_A 472 SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---RKVQEIVLPIFLNVAIKSELRIR--SCIVFFESKPSVA 546 (1056)
T ss_dssp GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---HHHHHHHHHHHHCTTSCHHHHHH--HHHHHHHTCCCHH
T ss_pred HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---HHHHHHHHHHhcCCCCChHHHHH--HHHHHHHHCcCHH
Confidence 44555555432 234588999999999976544 368899999995 3555665554 6888898877 56
Q ss_pred HHHHHHHhhh
Q 008918 140 SLTALFKHIG 149 (549)
Q Consensus 140 tL~~lf~qI~ 149 (549)
.|..|...+.
T Consensus 547 ~l~~ia~~l~ 556 (1056)
T 1lsh_A 547 LVSMVAVRLR 556 (1056)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 104
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=64.26 E-value=35 Score=33.33 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHh-hh
Q 008918 187 ERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA-LP 265 (549)
Q Consensus 187 Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~A-lp 265 (549)
-+.|...++-+|..+|.+-|..+..=+..+.+- ++ .+++.++++|.++|-.+..| .....++..++... +|
T Consensus 8 ~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~---~~-~~l~~vi~~if~kA~~ep~f----~~~YA~Lc~~L~~~~~p 79 (260)
T 1hu3_A 8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVD---TE-ERLKGVIDLVFEKAIDEPSF----SVAYANMCRCLVTLKVP 79 (260)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCC---SH-HHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC---CH-HHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHhhCC
Confidence 355666777788888888888776655555442 32 56788999999887766555 34567777777653 55
Q ss_pred hhccCCChhhHHHHHHh
Q 008918 266 FFLRGASGSKFLNYLNK 282 (549)
Q Consensus 266 ~fs~~v~st~f~~y~~~ 282 (549)
.+........|-.++.+
T Consensus 80 ~~~~~~~~~~Fr~~LL~ 96 (260)
T 1hu3_A 80 MADKPGNTVNFRKLLLN 96 (260)
T ss_dssp ---------CHHHHHHH
T ss_pred cccCCccchHHHHHHHH
Confidence 54332234456666544
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=64.26 E-value=11 Score=42.37 Aligned_cols=116 Identities=24% Similarity=0.257 Sum_probs=82.7
Q ss_pred HHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccc-------hhhHHHHHHHHHhhchhH
Q 008918 48 KQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-------LSKIVDILVQLLAAEEIV 120 (549)
Q Consensus 48 K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~-------~~riaDVL~QLLqsdd~~ 120 (549)
..++.+|.--|-+. .+.|..+++|.+.+|-.||..|++=|-.||..+++- .+-..-.|+.+|.++-..
T Consensus 107 ~~~~~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~ 181 (651)
T 3grl_A 107 EDLGSQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREV 181 (651)
T ss_dssp -CHHHHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHH
T ss_pred hHHHHHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHH
Confidence 34566666555543 588999999999999999999999999999887772 223566788888877666
Q ss_pred HHHHHHHHHHHHHhhchH--------HHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 121 ERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 121 E~~~v~~aL~sllk~d~k--------~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
-++.+---|+.|.+.++. +++..||+-|.. +.+.+.-.+=++|+..|.
T Consensus 182 iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~-Eg~~~Ggivv~DCL~ll~ 237 (651)
T 3grl_A 182 IRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE-EGNSDGGIVVEDCLILLQ 237 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-HTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh-cCCCccchhHHHHHHHHH
Confidence 677777778888887776 788888888762 111122245566665444
No 106
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=63.72 E-value=1.7e+02 Score=33.45 Aligned_cols=137 Identities=15% Similarity=0.268 Sum_probs=78.4
Q ss_pred HHHHhhhhHHhhccCccchHHHHHHhhhhccccchh-HHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHH
Q 008918 48 KQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELG-VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH 126 (549)
Q Consensus 48 K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~-IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~ 126 (549)
.+|.-+-++||-.-|-.+..++++.+.+-.++.+.. --..-||.+-.+-++. |+.=.--|..|
T Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~l~~~~~-------------- 158 (778)
T 3opb_A 95 SKLIQNDIPFALNLFEILSRSSIHVFVGCFSNKDATIALLNELQIRIHYGEDT--HVTYLLSIILQ-------------- 158 (778)
T ss_dssp HHHHHHTHHHHHHHHHTSCGGGHHHHHTTCCSGGGGHHHHHHHHHHHHHTCSS--CHHHHHHHHHH--------------
T ss_pred HHHHHhChHHHHHHHHhccCCceEeecccCCCHHHHHHHHHHHHHHhhcCCCc--chhHHHHHHHH--------------
Confidence 467778888899999999999999999988866532 2333333333333322 23323333333
Q ss_pred HHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHH-HHHHhhcccchhhhcCChHHHHHHHHHHHHHhc----ccc
Q 008918 127 KALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL-SFIRDKVFPLKAELLKPQEEMERHITDLIKKSL----EDV 201 (549)
Q Consensus 127 ~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l-~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL----~dV 201 (549)
|.+.|..++.. |.-|...|-. -++++.+|--++ -|++. ... ..++..+.+.+.|...+ .|+
T Consensus 159 --l~~~~~~~~~~-~~~l~~~~~~---~~~~~~~~~~~l~i~~~~--~~~------~~~~~~~~~~~~~~~l~~e~~~~~ 224 (778)
T 3opb_A 159 --LLNKFKYNFKE-VRFLVKELIL---RISEDEVKSMMLIIFAEL--QSS------FQKDFDKAVVDFMSSLIVEAEIDV 224 (778)
T ss_dssp --HHHHSCCCSTT-TTHHHHHHHT---TTTCHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHcCccccc-hhhHHHHhcc---ccChhhhHHHHHHHHHHH--HHh------CchHHHHHHHHHHHHHHHhhccCC
Confidence 34666666665 6666666652 234455654433 33322 111 13456666666665333 466
Q ss_pred cHHHHHHHHHHHh
Q 008918 202 TGAEFRMFMDFLK 214 (549)
Q Consensus 202 T~~EF~l~m~iL~ 214 (549)
+.++|..++++|.
T Consensus 225 ~~~~~~~~~~~l~ 237 (778)
T 3opb_A 225 GNDPLSIIVKTLS 237 (778)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCccHHHHHHHHH
Confidence 7778877777766
No 107
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=61.39 E-value=71 Score=31.23 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=62.6
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (549)
|++|.|.=-+--..+--+-.|+|....+.-++.+.++.|-.=|-.|.-=|..+..+.++|+.-.-+=|--||..+|-.++
T Consensus 119 gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHH
T ss_pred CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhh
Confidence 66666666666666666666666666666666666666655566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhchH
Q 008918 123 DAVHKALMSLLRQDVK 138 (549)
Q Consensus 123 ~~v~~aL~sllk~d~k 138 (549)
..+-.+|..+-..+||
T Consensus 199 aSaVEtL~~lA~~npk 214 (253)
T 2db0_A 199 ASAVEALVHLATLNDK 214 (253)
T ss_dssp HHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHcCHH
Confidence 6666666666666665
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=60.57 E-value=27 Score=35.00 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=81.6
Q ss_pred cChhhHHHHHHH----hc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhccccc--ccCcc
Q 008918 29 QNVKDYEGIIEA----AK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFC--KDTPE 101 (549)
Q Consensus 29 ~~~~~Y~~Il~~----~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lc--k~~~e 101 (549)
-+.+.|..++.+ .| +++-.-.-||....+- .--++....+|-++.|.+..|.++...|++.|-.+. .++++
T Consensus 108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 456677766654 33 6677777888888888 567779999999999999999999999999998885 56789
Q ss_pred chhhHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008918 102 YLSKIVDILVQLLAAEEIVERDAVHKALMSLL 133 (549)
Q Consensus 102 ~~~riaDVL~QLLqsdd~~E~~~v~~aL~sll 133 (549)
++..|.|=+.-||+++|+.-++.+=-+|..++
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999876655544443333
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=59.97 E-value=2.7e+02 Score=32.88 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhcc-ccchhHHHHHhhhcccccccCccchhh--
Q 008918 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSK-- 105 (549)
Q Consensus 30 ~~~~Y~~Il~~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcE-Ded~~IR~qAIk~Lp~lck~~~e~~~r-- 105 (549)
+.+....++...- ++...|+-|-+++-.|-+ =|+ |......|.. ..++.||-.|..-|-...+..|.-++.
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~----aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPD----AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSC----HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cch----HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 5677888887654 777888888888876554 354 4555556655 457889999988888877766654432
Q ss_pred ---HHHHHHHHHhh---------chhHHHHHHHHHHHHHHhhch
Q 008918 106 ---IVDILVQLLAA---------EEIVERDAVHKALMSLLRQDV 137 (549)
Q Consensus 106 ---iaDVL~QLLqs---------dd~~E~~~v~~aL~sllk~d~ 137 (549)
+=+-|.+++.. .++.-++.+..+|..+++.+.
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~ 144 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEW 144 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhC
Confidence 44555666553 134555666677777777753
No 110
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=59.15 E-value=22 Score=39.18 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=69.9
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhh---ch
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQ---DV 137 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~---d~ 137 (549)
.+.+|..++.+....|+.++.+|...|-.+|..+.++...| .-.|++||.++++.....+-.+|..|-.. +.
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 45678888888898899999999999999998777764444 45799999999998888888888888763 33
Q ss_pred H------HHHHHHHHhhhcCCCCCChHHHHHHHH
Q 008918 138 K------ASLTALFKHIGSVDEPSTDEFIREKVL 165 (549)
Q Consensus 138 k------~tL~~lf~qI~~~~e~~~eE~vREr~l 165 (549)
| +.+..|...+.+ ..+..+++.+.
T Consensus 126 k~~I~~~GaIp~LV~LL~s----~~~~~~~e~aa 155 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRK----ARDMDLTEVIT 155 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHH----CCSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcC----CCCHHHHHHHH
Confidence 3 345556666652 13445555533
No 111
>1d9c_A Interferon-gamma; helical homodimer, immune system; 2.00A {Bos taurus} SCOP: a.26.1.3 PDB: 1d9g_A 1rfb_A
Probab=58.29 E-value=10 Score=33.98 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccc
Q 008918 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL 65 (549)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L 65 (549)
++||.|-.||+ ++.+|=+..-.-|..|+.--+.....|.+=+|.++=|||-|-.+
T Consensus 6 ~~Ie~Lk~yfN--~s~~dv~dggplFl~ilknw~ee~dkkIi~SqIvs~Y~klF~~m 60 (121)
T 1d9c_A 6 REIENLKEYFN--ASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFENL 60 (121)
T ss_dssp HHHHHHHHHHT--CSSTTSSTTCCSSHHHHHHTTTCTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--cCcccccCCCCchhHhhhhhccccchhhHHHHHHHHHHHHHHHh
Confidence 67999988885 23333335556799999988888888899999999999876543
No 112
>2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3
Probab=57.47 E-value=11 Score=34.65 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccc
Q 008918 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL 65 (549)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L 65 (549)
++||.|-.||+ ++.+|=+..-.-|..|+.--+.....|.+=+|.++=|||-|-.+
T Consensus 6 k~Ie~LK~yfN--~s~~Dv~dggplFl~ilknw~ee~ekkIi~SqIvs~Y~klF~~m 60 (144)
T 2rig_A 6 RETEHLKAYLK--ANTSDVANGGPLFLNILRNWKEESDNKIIQSQIVSFYFKLFDNL 60 (144)
T ss_pred HHHHHHHHHhc--cCcccccCCCCchhHhhhhhhhccchhhHHHHHHHHHHHHHHHh
Confidence 67999988884 23334345667899999988888888999999999999988755
No 113
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=56.69 E-value=29 Score=41.94 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=41.5
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchh
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (549)
.++..+.++++.+=--..++...|-.||.++.|. +| +.+|+.|.+||+.+..
T Consensus 155 ~~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds-~H-~~v~~~L~~lL~~~~~ 206 (1323)
T 3s4w_B 155 GKDLTAQMMQLISVAPVNLQHDFITSLPEILGDS-QH-ANVGKELGELLVQNTS 206 (1323)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGG-GH-HHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcch-hh-HHHHHHHHHHHhcCcc
Confidence 5777778888877556689999999999999875 33 4799999999998543
No 114
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=55.74 E-value=1.4e+02 Score=28.33 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHhhhhhcc-CCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCh
Q 008918 250 ADHIDRLISCLYMALPFFLR-GASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP 312 (549)
Q Consensus 250 ~e~idRli~cl~~Alp~fs~-~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~ 312 (549)
+...--.+.++..++.-|.. .+....++..+++.+.+.|++-+.+-|-.-.+++.++-.+.|+
T Consensus 153 pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 153 PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 33333444555556665643 3445677888887777778877667777777788887777664
No 115
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=54.51 E-value=14 Score=43.37 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=73.6
Q ss_pred cChhhHHHHHHHh--cCCHHHHHHHhhhhHHh-hccCccchHHHHHHhhh-hccccchhHHHHHhhhcccccccCccchh
Q 008918 29 QNVKDYEGIIEAA--KTSLKAKQLAAQLIPRF-FKFFPDLSSRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (549)
Q Consensus 29 ~~~~~Y~~Il~~~--kg~~k~K~LaaQfI~kf-fk~FP~L~e~Ai~a~lD-LcEDed~~IR~qAIk~Lp~lck~~~e~~~ 104 (549)
.+....+.+|.-. ..+..+++-|.-=|+.- +.. | +++..+++ |.++.|+.||..|.-+|-.+|-.|+. .
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~ 646 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-Y----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q 646 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-C----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H
Confidence 3445555555422 24566777776666642 222 3 35666676 55689999999999999999998874 7
Q ss_pred hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008918 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (549)
Q Consensus 105 riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~ 139 (549)
++.|+|..|+.+.+..++..+--||-.+......+
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 89999999999888888887777777666654433
No 116
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=52.75 E-value=19 Score=35.95 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccc-hHHHH-----------------
Q 008918 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL-SSRAV----------------- 70 (549)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L-~e~Ai----------------- 70 (549)
..||.|-+||+- ...|-++.-..|..||.--+.....|.+-||.++=|||-|-.| -.++|
T Consensus 7 ~eie~Lk~yfNa--s~~Dv~dgg~lfl~il~nW~e~~dkkIi~SQIVSfY~klfe~lkdn~~iq~si~~ik~~l~~~f~n 84 (258)
T 1fyh_A 7 KEAENLKKYFNA--GHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFN 84 (258)
T ss_dssp HHHHHHHHHHTT--TSGGGGSSCCSSHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--CCCcccCCCcchHHHHHhhhhcccceeHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhc
Confidence 568899888842 2234345667899999999988899999999999999987644 11222
Q ss_pred ------HHhhhhcc--ccchhHHHHHhhhcccc
Q 008918 71 ------DAHLDLIE--EEELGVRVQAIRGLPLF 95 (549)
Q Consensus 71 ------~a~lDLcE--Ded~~IR~qAIk~Lp~l 95 (549)
+...+|.- =.|++|...||.+|-.+
T Consensus 85 ~s~~K~~df~~l~k~~v~d~~vQrkAi~EL~~V 117 (258)
T 1fyh_A 85 SNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQV 117 (258)
T ss_dssp TCHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 23333332 45677777777777666
No 117
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.99 E-value=17 Score=31.72 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=28.0
Q ss_pred hhhhhhhc-cHHHHhhhhhcCCCCccCCCcccccccccCCCC
Q 008918 439 TTGLRTCN-NILAMSKPLHSKTPSFIGDKSVNLSWKEATKPS 479 (549)
Q Consensus 439 ~~aL~~~~-NI~~li~~L~~~pPsf~~~~~itlSW~~~~k~~ 479 (549)
+.||..|+ ++...|..|+.+. ..+-+|.+++|+.
T Consensus 58 r~AL~~~ngDl~~AI~~Lleg~-------~~~~~W~~~~kKk 92 (104)
T 1wj7_A 58 VIALHDCNGDVNRAINVLLEGN-------PDTHSWEMVGKKK 92 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCS-------SSCSSCSSCCCCC
T ss_pred HHHHHHcCCCHHHHHHHHHhCC-------CcCCceeeecccc
Confidence 36899999 9999999999985 3577999987444
No 118
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=48.59 E-value=12 Score=40.54 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=47.7
Q ss_pred CCHHHHHHHhhhhHHhhccCccchHH-----HHHHhhhhccccchhHHHHHhhhcccccccCc
Q 008918 43 TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP 100 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~ 100 (549)
.++.+--.|+.=|..|.+|+|....- +=..++.|..++|+.||.+|++.+-.+-..||
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~~ 479 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF 479 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHSC
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 46788889999999999999998433 55677899999999999999998876655544
No 119
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=45.91 E-value=73 Score=30.55 Aligned_cols=81 Identities=10% Similarity=-0.038 Sum_probs=61.5
Q ss_pred hHHhhccCccchHHHHHHhhhhccccchhHHHHHhh----hccccc-cc-CccchhhHHHHHHHHHhhchhHHHHHHHHH
Q 008918 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIR----GLPLFC-KD-TPEYLSKIVDILVQLLAAEEIVERDAVHKA 128 (549)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk----~Lp~lc-k~-~~e~~~riaDVL~QLLqsdd~~E~~~v~~a 128 (549)
++..|++.|. +.+-+.....|++.=+|..||- =|..+- |. +..++..+-|++...+.+++.-..-+|.++
T Consensus 99 ~~~l~~~~~~----~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~ 174 (235)
T 1t06_A 99 VAVTLSESNI----AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNF 174 (235)
T ss_dssp HHHHHTTSSS----HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHHHhcCch----HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHH
Confidence 4444555555 4556778888999999999998 434433 21 346788888888999999999999999999
Q ss_pred HHHHHhhchHH
Q 008918 129 LMSLLRQDVKA 139 (549)
Q Consensus 129 L~sllk~d~k~ 139 (549)
|.++.+.||.-
T Consensus 175 Lr~~gk~~~~~ 185 (235)
T 1t06_A 175 LNTVAISYVPL 185 (235)
T ss_dssp HHHHHHHCGGG
T ss_pred HHHHHhhCHHH
Confidence 99999988763
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=42.28 E-value=11 Score=36.80 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=60.7
Q ss_pred Hhc-CCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhch
Q 008918 40 AAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEE 118 (549)
Q Consensus 40 ~~k-g~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd 118 (549)
..+ .+..+.+-++..++ + +.+..|.+|+|..||..|+..||. +.|.+|+.+++
T Consensus 154 l~~D~d~~VR~~aa~~l~------~-------~ll~~ll~D~d~~VR~aaa~~l~~-------------~~L~~Ll~D~d 207 (244)
T 1lrv_A 154 FMRDEDRQVRKLVAKRLP------E-------ESLGLMTQDPEPEVRRIVASRLRG-------------DDLLELLHDPD 207 (244)
T ss_dssp TTTCSCHHHHHHHHHHSC------G-------GGGGGSTTCSSHHHHHHHHHHCCG-------------GGGGGGGGCSS
T ss_pred HHcCCCHHHHHHHHHcCC------H-------HHHHHHHcCCCHHHHHHHHHhCCH-------------HHHHHHHcCCC
Confidence 444 67778877777633 1 345578899999999999998742 57888999999
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHH
Q 008918 119 IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL 165 (549)
Q Consensus 119 ~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l 165 (549)
...+..+-.+|- ... +..+. ..+..||+.+.
T Consensus 208 ~~VR~~aa~~l~-------~~~----L~~L~-----D~~~~VR~aa~ 238 (244)
T 1lrv_A 208 WTVRLAAVEHAS-------LEA----LRELD-----EPDPEVRLAIA 238 (244)
T ss_dssp HHHHHHHHHHSC-------HHH----HHHCC-----CCCHHHHHHHH
T ss_pred HHHHHHHHHcCC-------HHH----HHHcc-----CCCHHHHHHHH
Confidence 999999988877 122 33332 56678888764
No 121
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=41.69 E-value=24 Score=39.73 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=67.9
Q ss_pred cCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHH
Q 008918 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE 121 (549)
Q Consensus 42 kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E 121 (549)
.+..=+=|-++=+.-||++++=..-+..+++++....|.|-+||.-|--.|--++ .|+.+..+.++|-..|..-| +
T Consensus 273 ~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LD--D 348 (800)
T 3oc3_A 273 DSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEE--L 348 (800)
T ss_dssp GCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCC--S
T ss_pred CCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhc--c
Confidence 3444455566667778885544335778888888889999999999999888888 67889999999988888642 2
Q ss_pred HHHHHHHHHHHHhh
Q 008918 122 RDAVHKALMSLLRQ 135 (549)
Q Consensus 122 ~~~v~~aL~sllk~ 135 (549)
+.+...++|+||..
T Consensus 349 LSASTgSVMdLLAk 362 (800)
T 3oc3_A 349 ISVSKTSNLSLLTK 362 (800)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 77778887877654
No 122
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=41.02 E-value=18 Score=36.01 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHHHhc-CCHHHHHH----HhhhhHHhhccCccchHHHH---HHhhhhccccchhHHHHHhhhcccccc
Q 008918 34 YEGIIEAAK-TSLKAKQL----AAQLIPRFFKFFPDLSSRAV---DAHLDLIEEEELGVRVQAIRGLPLFCK 97 (549)
Q Consensus 34 Y~~Il~~~k-g~~k~K~L----aaQfI~kffk~FP~L~e~Ai---~a~lDLcEDed~~IR~qAIk~Lp~lck 97 (549)
+..++++.| .+.+++.= -+++|++|.-. | .+++ -.+..+.+|.|.+||-+|+..+..+.+
T Consensus 169 ~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~---~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 169 TPMLLDALKSKNARQRSECLLVIEYYITNAGIS-P---LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-G---GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-c---cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 556677777 55666644 36677777765 3 5688 889999999999999999999998864
No 123
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=38.08 E-value=26 Score=34.88 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccc
Q 008918 5 SDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL 65 (549)
Q Consensus 5 ~~~~~~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L 65 (549)
+.-.++||.|-.||+ ++.+|-+..-.-|..|+.--+.....|.+=+|.++=|||-|-.|
T Consensus 127 ~~~~keIe~LK~yfN--asn~Dv~dggplFl~ilknwkee~dkkIi~SQIvs~Y~KlFe~L 185 (258)
T 1fyh_A 127 GEFVKEAENLKKYFN--AGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNF 185 (258)
T ss_dssp HHHHHHHHHHHHHHC---------CCCCSSHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhc--cCCccccCCCcchHHhhhhhhhccchhhHHHHHHHHHHHHHHhh
Confidence 344578999988884 34444445667799999987878888899999999999987654
No 124
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=36.28 E-value=1.6e+02 Score=28.96 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHhhccccCC-CCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhh
Q 008918 187 ERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGE-KAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALP 265 (549)
Q Consensus 187 Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t-~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~e~idRli~cl~~Alp 265 (549)
.+.+...++-+|..+|.+-|..+..=+-.+.+-.. ..-..+++.+|++|.++|-.+..| .....++..++..-+|
T Consensus 33 ~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~ep~f----s~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 33 KDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHW----SSMYAQLCGKVVKELN 108 (284)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHhcC
Confidence 34466667777788888888765444433332100 011135677899999987666555 4456888888877765
Q ss_pred h-hcc----CC-ChhhHHHHHHhhhcccCCC-----CC--------------h---------hhhhhHHHHHHHhCCCCC
Q 008918 266 F-FLR----GA-SGSKFLNYLNKHIIPVFDK-----LP--------------E---------ERKLDLLKALAEISPYTT 311 (549)
Q Consensus 266 ~-fs~----~v-~st~f~~y~~~~vlP~l~~-----l~--------------e---------~~kl~lLK~lAE~s~~~~ 311 (549)
- +.. +. .++-|..++.+..--.|+. ++ + .+-+-+.+.++|+-.+ +
T Consensus 109 ~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~-~ 187 (284)
T 2vso_E 109 PDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRL-N 187 (284)
T ss_dssp TTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhc-c
Confidence 3 321 11 2344656665443322211 11 0 0234567888888433 1
Q ss_pred hhhhhhhHHHHHHHh-hhcCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008918 312 PQDSRQILPSVAVLL-KYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 357 (549)
Q Consensus 312 ~~da~~~l~~i~~~L-~ymP~~~~~~~~l~fS~vEcLLyafh~L~~K 357 (549)
.....-++.-|-.+| .+-..|.. -.||||+-.+...|++
T Consensus 188 ~l~~~i~~~ci~~LL~~~~~~p~e-------~~iE~l~~lL~tvG~~ 227 (284)
T 2vso_E 188 LLTGKMMFECFRRLMKDLTDSPSE-------ETLESVVELLNTVGEQ 227 (284)
T ss_dssp SSCHHHHHHHHHHHHHHHHSCCCH-------HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCCCCH-------HHHHHHHHHHHHHHHH
Confidence 111111222222333 32111111 2699999999997765
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=36.17 E-value=1.4e+02 Score=35.25 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=69.8
Q ss_pred HHHHHHHh---c-CCHHHHHHHhhhhH---HhhccCccchHHHHHHhhhhccc------------cchhHHHHHhhhccc
Q 008918 34 YEGIIEAA---K-TSLKAKQLAAQLIP---RFFKFFPDLSSRAVDAHLDLIEE------------EELGVRVQAIRGLPL 94 (549)
Q Consensus 34 Y~~Il~~~---k-g~~k~K~LaaQfI~---kffk~FP~L~e~Ai~a~lDLcED------------ed~~IR~qAIk~Lp~ 94 (549)
...+|... . .+++...-+-+.|. .||.+.|++...+++.++..+.| ....||.+|--.+-.
T Consensus 531 ~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~ 610 (1204)
T 3a6p_A 531 GIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 (1204)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 44555541 3 47777766767665 56666799999999999977765 344799999999999
Q ss_pred ccccCccchhhHHH----HHHHHHhhch---hHHHHHHHHHHHHH
Q 008918 95 FCKDTPEYLSKIVD----ILVQLLAAEE---IVERDAVHKALMSL 132 (549)
Q Consensus 95 lck~~~e~~~riaD----VL~QLLqsdd---~~E~~~v~~aL~sl 132 (549)
||++-++++.-..| .+.+++.... ..|......||..+
T Consensus 611 L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i 655 (1204)
T 3a6p_A 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLI 655 (1204)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHH
Confidence 99988877654444 3345565444 67777777777665
No 126
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=35.58 E-value=1.8e+02 Score=29.64 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=89.2
Q ss_pred HHhhhhhhccccc-cChhhH-HHHHHHhcCCHHHHHHHhhhhHHh-hccCccchHHHHHHhhhhccccchh---------
Q 008918 16 EFGERLNEAKDKS-QNVKDY-EGIIEAAKTSLKAKQLAAQLIPRF-FKFFPDLSSRAVDAHLDLIEEEELG--------- 83 (549)
Q Consensus 16 ~~~~~L~~akd~~-~~~~~Y-~~Il~~~kg~~k~K~LaaQfI~kf-fk~FP~L~e~Ai~a~lDLcEDed~~--------- 83 (549)
+|++.+ .+.... ..- +| +.+|..+=|..+++.|-.++.+.- .+-|..|..---..+.+++.+|-||
T Consensus 63 EF~~~~-~~~~~i~~gg-~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~EhPQtiAlILs~L 140 (329)
T 3hjl_A 63 ELLDEI-KKAGIKIKKP-EEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQL 140 (329)
T ss_dssp HHHHHH-HHTTCCCSCH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTS
T ss_pred HHHHHH-HhcCCCCCch-HHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHcC
Confidence 344444 344333 444 55 789999999999888877665432 2335555555556678888888888
Q ss_pred ---------------HHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHH--HHHHHHHHHHhhchHHHHHHHHH
Q 008918 84 ---------------VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERD--AVHKALMSLLRQDVKASLTALFK 146 (549)
Q Consensus 84 ---------------IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~--~v~~aL~sllk~d~k~tL~~lf~ 146 (549)
+|..-+.-+..+-.=+|+-+..|.++|-..|.+-...... -=.+.+..+|..=.+++-..++.
T Consensus 141 ~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~ 220 (329)
T 3hjl_A 141 SPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQ 220 (329)
T ss_dssp CHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHH
Confidence 4555566666666667777777888886665543221111 01244557777766777777777
Q ss_pred hhhcCCCCCChHHHHHHHHHH
Q 008918 147 HIGSVDEPSTDEFIREKVLSF 167 (549)
Q Consensus 147 qI~~~~e~~~eE~vREr~l~F 167 (549)
.|.. ..|.--+.+|+++..|
T Consensus 221 ~L~~-~dpela~~Ir~~MF~F 240 (329)
T 3hjl_A 221 SIGQ-EDPLLEERIREKMFTF 240 (329)
T ss_dssp HHHH-HCHHHHHHHHHHHSCG
T ss_pred HHHH-hCHHHHHHHHHHhcCH
Confidence 7762 1111112356666665
No 127
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=33.09 E-value=3.3e+02 Score=26.84 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCHHHHHHHhhhhHHhhccC----ccc----hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHH
Q 008918 43 TSLKAKQLAAQLIPRFFKFF----PDL----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL 114 (549)
Q Consensus 43 g~~k~K~LaaQfI~kffk~F----P~L----~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLL 114 (549)
.+.++=.-+-+++.-+|... +.+ +..-+=++++=+.|.-..||.++..-|-.+|.--| -+++.+.|+.-+
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~v~~~l~~g~ 176 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLKMTPMLLDAL 176 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHH
Confidence 44444445555555554322 222 23455677888889888899887777766764322 356888888888
Q ss_pred hhchhHHHHHHH---HHHHHHHhhchHHHH---HHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 008918 115 AAEEIVERDAVH---KALMSLLRQDVKASL---TALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (549)
Q Consensus 115 qsdd~~E~~~v~---~aL~sllk~d~k~tL---~~lf~qI~~~~e~~~eE~vREr~l~Fl~~ 170 (549)
.+-.+-.+..+= .++.+.+-+.|...| ..+..+|. +-|..||+-++.-+.+
T Consensus 177 ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~-----D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVG-----DKDVNVRNAAINVLVA 233 (266)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGG-----CSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 876664444443 344444445577777 77778876 5667899988877664
No 128
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=32.62 E-value=4.2e+02 Score=27.10 Aligned_cols=175 Identities=19% Similarity=0.276 Sum_probs=93.2
Q ss_pred ccchhHHHHHhhhcccccccCcc-----------chhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---chH------
Q 008918 79 EEELGVRVQAIRGLPLFCKDTPE-----------YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DVK------ 138 (549)
Q Consensus 79 Ded~~IR~qAIk~Lp~lck~~~e-----------~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---d~k------ 138 (549)
..++.||-+|.+=|-.=-++||. |+..+.+-|.+++.. .....+++.|..++++.- +|.
T Consensus 81 ~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~-~~~~~~~l~KR~LsII~~L~~~~~~F~~~~ 159 (315)
T 3qml_C 81 NLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDS-NHRSSNILIKRYLSILNELPVTSEDLPIYS 159 (315)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHSCCCSTTC--CC
T ss_pred cCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHhcChHhhhhcc
Confidence 34556777777766554455554 344444444443311 101123566665555432 222
Q ss_pred -HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcc-cchhh------hcC-----ChHHHHHHHHHHHHHhcccccHH-
Q 008918 139 -ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF-PLKAE------LLK-----PQEEMERHITDLIKKSLEDVTGA- 204 (549)
Q Consensus 139 -~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~kl~-~l~~e------~~~-----~~eE~Ee~i~~~ikKvL~dVT~~- 204 (549)
.+|..+|. +. ..+..++.|++..|..-.. .++.. +-+ |..++++ ...++-+.+|+-...
T Consensus 160 m~~L~~ly~-~~-----~~d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~-w~~~~q~~iq~k~~dE 232 (315)
T 3qml_C 160 TVVLQNVYE-RN-----NKDKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQE-WANEFQEMVQNKSIDE 232 (315)
T ss_dssp HHHHHHHHH-HT-----TTCHHHHHHHHHHHHHHHHHHTTC-------------------CHH-HHHHHHHHHTCTTSCH
T ss_pred HHHHHHHHc-cC-----CCCHHHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHH-HHHHHHHHHhccccCH
Confidence 56777775 22 3367889999998876332 12111 111 1112222 334455566643333
Q ss_pred -HHHHHHHHHhhccc-c-CCCCchhHHHHHHHHHHHhhh-----ccccCCCCCh--HHHHHHHHHHHHhh
Q 008918 205 -EFRMFMDFLKSLSL-F-GEKAPTERMKELIGIIEGQAD-----LDAQFNVSDA--DHIDRLISCLYMAL 264 (549)
Q Consensus 205 -EF~l~m~iL~~l~~-~-~t~~~~gr~qeLv~~i~eqa~-----Ld~~f~~sD~--e~idRli~cl~~Al 264 (549)
.|..|++-|..++. + .+..|. ...+.+++.+++ +......-|. +.+|+.+--.+|.+
T Consensus 233 ~~~r~fF~~L~~ik~~~~~~lK~~---~~FLnWLa~E~e~Rk~~~~~~~~~rd~eq~~FD~~li~sRH~V 299 (315)
T 3qml_C 233 LHTRTFFDTLYNLKKIFKSDITIN---KGFLNWLAQQCKARQSNLDNGLQERDTEQDSFDKKLIDSRHLI 299 (315)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCCC---HHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcccccCCC---HHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHHHHHHH
Confidence 56788888887776 5 355565 679999998866 4444444443 57787776555543
No 129
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=31.86 E-value=2.1e+02 Score=28.40 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=27.6
Q ss_pred cChhhHHHHHHHhc----CCHHHHHHHhhhhHHhhccCccchH
Q 008918 29 QNVKDYEGIIEAAK----TSLKAKQLAAQLIPRFFKFFPDLSS 67 (549)
Q Consensus 29 ~~~~~Y~~Il~~~k----g~~k~K~LaaQfI~kffk~FP~L~e 67 (549)
+..++|+-|+.+.. -+...-.++-..--.|-.|||+|..
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~ 54 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELES 54 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHH
Confidence 56678999999877 2334444555555677799999975
No 130
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=31.44 E-value=10 Score=38.30 Aligned_cols=12 Identities=50% Similarity=1.030 Sum_probs=0.0
Q ss_pred CCCCCCCCCccc
Q 008918 526 RGGRGGIRGRGR 537 (549)
Q Consensus 526 ~~~~~g~rgrgr 537 (549)
||||||.||++|
T Consensus 237 rgg~g~~~~~~~ 248 (273)
T 3u5c_h 237 RGGRGARKGNNT 248 (273)
T ss_dssp ------------
T ss_pred cCCcccccCCCC
Confidence 444444454443
No 131
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=30.83 E-value=3e+02 Score=32.51 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=32.3
Q ss_pred ccchHHHHHHhhhhc---cccchhHHHHHhhhc---ccccccCccchhhHHHHHHHHHhh
Q 008918 63 PDLSSRAVDAHLDLI---EEEELGVRVQAIRGL---PLFCKDTPEYLSKIVDILVQLLAA 116 (549)
Q Consensus 63 P~L~e~Ai~a~lDLc---EDed~~IR~qAIk~L---p~lck~~~e~~~riaDVL~QLLqs 116 (549)
|++....+..++.+| ..+++.||..+|.-| ..+...+|+|++.+-.-|...++.
T Consensus 524 ~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~ 583 (1204)
T 3a6p_A 524 EEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTF 583 (1204)
T ss_dssp TCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhcc
Confidence 444334455555554 456777887777744 334456778888877755555543
No 132
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=29.47 E-value=22 Score=31.04 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=38.4
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~ 120 (549)
.++++...|.=+... .+.|+.+..+|-++.+|-..|++++.+-+....+.
T Consensus 5 ~~~~l~~~L~~L~~s-----~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~ 54 (135)
T 4fu3_A 5 SESALEKKLSELSNS-----QQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN 54 (135)
T ss_dssp CHHHHHHHHHHCCSS-----TTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 457777777766422 36788889999989899999999999998876663
No 133
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.32 E-value=16 Score=34.51 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=9.0
Q ss_pred hhHhhcCChHHHHHH
Q 008918 417 KEMAAAKTDEAKEKI 431 (549)
Q Consensus 417 K~~~~~k~denk~k~ 431 (549)
....+.+.|+++++-
T Consensus 103 aL~~a~~~DeakI~a 117 (175)
T 3lay_A 103 ALLTASSPDTAKINA 117 (175)
T ss_dssp HHHTSSSCCHHHHHH
T ss_pred HHHhCCCCCHHHHHH
Confidence 445556677776553
No 134
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=28.17 E-value=1.5e+02 Score=26.49 Aligned_cols=96 Identities=5% Similarity=0.121 Sum_probs=55.3
Q ss_pred HHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHH--------HHHHHHHHH------HHh
Q 008918 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER--------DAVHKALMS------LLR 134 (549)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~--------~~v~~aL~s------llk 134 (549)
++++.|+=..|--+.+=.+-|..|..+|.++..|-+.|++++.+-+..-.|.-. ++|+|+... -|.
T Consensus 6 ~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~ 85 (145)
T 3d9j_A 6 TFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA 85 (145)
T ss_dssp HHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHH
Confidence 344444333333333556788899999999988999999999887777555322 334444332 133
Q ss_pred hchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918 135 QDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (549)
Q Consensus 135 ~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~ 169 (549)
..+...|..+|..+.. -.+..|.++.+.+.
T Consensus 86 ~~F~~~L~~~f~~~~~-----~~~~~r~kl~rLl~ 115 (145)
T 3d9j_A 86 PRFSNNIISTFQNLYR-----CPGDDKSKIVRVLN 115 (145)
T ss_dssp HHHHHHHHHHHHHHTS-----SCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHH
Confidence 3344555555555541 12555666655443
No 135
>3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A
Probab=27.89 E-value=1.6e+02 Score=27.43 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=56.1
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCC--CChHHHHHHHHHHHHhhhh
Q 008918 189 HITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNV--SDADHIDRLISCLYMALPF 266 (549)
Q Consensus 189 ~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~~--sD~e~idRli~cl~~Alp~ 266 (549)
.+.+.+--+=...|.+||..|+++++-+-..+ + .+. +=|..+++ ..++-=+++-......-||
T Consensus 24 ~~~akL~~Ak~~LtkeEFeqfi~LlKe~~~i~----------k--~~~---D~NG~~~~ErLs~~eqekl~~i~~eL~Py 88 (158)
T 3fh3_A 24 RFSAKLSEAKDEMGTKEYEVFTKELKKLTNAK----------L--AYG---DSNGNIDYDALSSEKREEMKKVSMGLQPY 88 (158)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHHHHH----------H--HHB---CTTSCBCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------H--hcc---CcCCCCChHHCCHHHHHHHHHHHHHhccH
Confidence 33444433445689999999999988554432 1 111 11233433 2333335555666677888
Q ss_pred h---ccCCCh------hhHHHHHH---h--hhc--------ccCCCCChhhhhhHHHHHHHh
Q 008918 267 F---LRGASG------SKFLNYLN---K--HII--------PVFDKLPEERKLDLLKALAEI 306 (549)
Q Consensus 267 f---s~~v~s------t~f~~y~~---~--~vl--------P~l~~l~e~~kl~lLK~lAE~ 306 (549)
| ..+.+| -.|..|+- + .|. +..+.+|+..|-++.++.+-|
T Consensus 89 fDKL~~~~ssk~~lt~~e~~~y~~~l~~~~~~~~~~~~~g~~~ve~~pe~~~e~~~~~~~~~ 150 (158)
T 3fh3_A 89 FDKLNGHKSSKEVLTQEEFDRYMEALMTHEIVRVKTKSTGAIKVEEIPEAYKERFIKAEQFM 150 (158)
T ss_dssp HHHHTTCCCHHHHSCHHHHHHHHHHHHHHHHHHHHHTCSSCCCGGGSCGGGHHHHHHHHHHH
T ss_pred HHHHcCCccHhhhcCHHHHHHHHHHHHHHHHheeecCCCCCccHHhcCHHHHHHHHHHHHHH
Confidence 8 222222 22333332 1 222 356677888888888877654
No 136
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=27.65 E-value=25 Score=26.49 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.3
Q ss_pred hhhhhhc-cHHHHhhhhhcCCCC
Q 008918 440 TGLRTCN-NILAMSKPLHSKTPS 461 (549)
Q Consensus 440 ~aL~~~~-NI~~li~~L~~~pPs 461 (549)
.||+.|+ |+...+.-|+.++||
T Consensus 31 ~AL~~t~gnve~Ave~L~~~~~s 53 (53)
T 2knz_A 31 QALIATGGDINAAIERLLGSQLS 53 (53)
T ss_dssp HHHHHHTSCHHHHHHHHHHCCCC
T ss_pred HHHHHhCCCHHHHHHHHHHcCCC
Confidence 5889888 899999999998765
No 137
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=26.10 E-value=2.4e+02 Score=29.37 Aligned_cols=205 Identities=8% Similarity=0.113 Sum_probs=100.3
Q ss_pred cccccccCccchhhHHHHHHHHHhhc-hhHHHHHHHHHHHH------HHhhchHH--HHHHHHHhhhcCCCCCChH---H
Q 008918 92 LPLFCKDTPEYLSKIVDILVQLLAAE-EIVERDAVHKALMS------LLRQDVKA--SLTALFKHIGSVDEPSTDE---F 159 (549)
Q Consensus 92 Lp~lck~~~e~~~riaDVL~QLLqsd-d~~E~~~v~~aL~s------llk~d~k~--tL~~lf~qI~~~~e~~~eE---~ 159 (549)
+..||+|. + .+=+|-++|... ++.|++.+=+.+.. -|-.|+-| .+..||..-.. ..++ .
T Consensus 31 i~~la~Dq--~---GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~----~~~~~~~~ 101 (412)
T 3k62_A 31 LMKFAVDK--T---GCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLA----TNDDGYTK 101 (412)
T ss_dssp HHHHHTSH--H---HHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHH----CCSTTHHH
T ss_pred cHHHhcCC--h---hHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCc----ccccccHH
Confidence 45667762 2 334666777765 77788877666532 13335543 45566665431 0000 4
Q ss_pred HHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHH--h--hccccCCCCchhHHHHHHHHH
Q 008918 160 IREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFL--K--SLSLFGEKAPTERMKELIGII 235 (549)
Q Consensus 160 vREr~l~Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL--~--~l~~~~t~~~~gr~qeLv~~i 235 (549)
.|+.++..+..++..+..... =.-.+.|+++-.+.++...+++-| . -+.++.+..+ .-.|+-+
T Consensus 102 q~~~i~~~l~g~v~~L~~~~~---------GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~G----NhVIQK~ 168 (412)
T 3k62_A 102 RQEKLKNFISSQMTDMCLDKF---------ACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNA----NHVIQKV 168 (412)
T ss_dssp HHHHHHHHHHHTHHHHHHSTT---------HHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTT----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChh---------hhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccc----cHHHHHH
Confidence 577788888777766533222 123445556666666665555433 0 1122222221 1122222
Q ss_pred HHhhhccccCCCCChHHHHHHHHHHH---HhhhhhccCCChhhHHHHHHhhhcc-----cCCCCChhhhhhHHH-HHHHh
Q 008918 236 EGQADLDAQFNVSDADHIDRLISCLY---MALPFFLRGASGSKFLNYLNKHIIP-----VFDKLPEERKLDLLK-ALAEI 306 (549)
Q Consensus 236 ~eqa~Ld~~f~~sD~e~idRli~cl~---~Alp~fs~~v~st~f~~y~~~~vlP-----~l~~l~e~~kl~lLK-~lAE~ 306 (549)
.+. ..++..+.++..+. +.. -++.+..++.-+.-+.+..-+ .+..++.+.|..+++ ++.++
T Consensus 169 Le~---------~~~~~~~~I~~~~~~~~~~~-~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I 238 (412)
T 3k62_A 169 VAV---------IPLKNWEFIVDFVATPEHLR-QICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSV 238 (412)
T ss_dssp HHH---------SCHHHHHHHHHHHHSHHHHH-HHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHh---------CCHHHHHHHHHHHhcchhHH-HHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 221 12344455554443 222 223333344444444433322 111112345666665 45667
Q ss_pred CCCCChhhhhhhHHHHHHHh-hh
Q 008918 307 SPYTTPQDSRQILPSVAVLL-KY 328 (549)
Q Consensus 307 s~~~~~~da~~~l~~i~~~L-~y 328 (549)
.++|....-.+.-+.|.+.+ +.
T Consensus 239 ~~~~~~L~~dq~GNyViQ~iL~~ 261 (412)
T 3k62_A 239 TNRCQELATNEYANYIIQHIVSN 261 (412)
T ss_dssp HHTHHHHHHSTTTHHHHHHHHHC
T ss_pred HHHHHHHhhCccccHHHHHHHhc
Confidence 77776665666778888777 55
No 138
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=25.37 E-value=1.8e+02 Score=26.05 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-------chHHHHHHHHHhhhcCCCCCCh
Q 008918 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-------DVKASLTALFKHIGSVDEPSTD 157 (549)
Q Consensus 85 R~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-------d~k~tL~~lf~qI~~~~e~~~e 157 (549)
-++-|..|-.+|.+|-+|-+.|++++.+-+..-.|.-.-.+==-+.++++. .+...|-.+|.+.-. ..+
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~----~~d 98 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYL----LVD 98 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHH----TSC
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----hCC
Confidence 456677888999988888888999988777654443332222223333332 222334445555442 346
Q ss_pred HHHHHHHHHHHHh
Q 008918 158 EFIREKVLSFIRD 170 (549)
Q Consensus 158 E~vREr~l~Fl~~ 170 (549)
|.+|.++.+.+..
T Consensus 99 ~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 99 NTTRTKLINMFKL 111 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788888877665
No 139
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.83 E-value=89 Score=26.72 Aligned_cols=33 Identities=9% Similarity=0.292 Sum_probs=29.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008918 382 DFSDCYKDFTERLTTVEDLTRATMKKLTQGLAD 414 (549)
Q Consensus 382 D~~~~~kdF~~RLqyla~~~q~yikkL~~~l~~ 414 (549)
.|++-++++..+|+-|...++.||.-|++-|+-
T Consensus 49 kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~v 81 (94)
T 3fx7_A 49 KFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 568889999999999999999999999988753
No 140
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=24.62 E-value=2.3e+02 Score=26.03 Aligned_cols=108 Identities=13% Similarity=0.139 Sum_probs=63.6
Q ss_pred HHHHHHhhhhccccchhHHHHHhhhcccccccCccchhhHHHHHHHHHhhchh--------HHHHHHHHHHHHHHhh---
Q 008918 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI--------VERDAVHKALMSLLRQ--- 135 (549)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~--------~E~~~v~~aL~sllk~--- 135 (549)
+..+.++.||+ +.|=..=|+.|-.+|.+|-++-+.|+..|....+.=-+ +.=.+|++++.+.=+.
T Consensus 7 ~~~L~sL~~lk----p~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~ 82 (157)
T 3clj_A 7 VATLESFKDLK----SGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNS 82 (157)
T ss_dssp HHHHHGGGGCS----SSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHcC----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCc
Confidence 45667777787 44544556777888988888888888888877776444 2223444444332110
Q ss_pred --ch-----------HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh--hcccchhhhcCC
Q 008918 136 --DV-----------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD--KVFPLKAELLKP 182 (549)
Q Consensus 136 --d~-----------k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~~--kl~~l~~e~~~~ 182 (549)
.| ...+..+|..+.. ..++..|+++.+.+.. |-...+.+++.+
T Consensus 83 ~~a~~gt~a~~v~~~~e~i~~l~~~~~~----~~~~~~k~Ki~klldiW~k~~~Fp~e~i~~ 140 (157)
T 3clj_A 83 SSNKPGTCAHAINTLGEVIQELLSDAIA----KSNQDHKEKIRMLLDIWDRSGLFQKSYLNA 140 (157)
T ss_dssp ---STTSHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHTTTTTSCCTT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccCCCCCHHHHHH
Confidence 12 2344566666332 3456778888877665 444455666543
No 141
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=24.16 E-value=6.3e+02 Score=31.42 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=50.0
Q ss_pred HHhhhccc-cCC-CCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHh-------
Q 008918 236 EGQADLDA-QFN-VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEI------- 306 (549)
Q Consensus 236 ~eqa~Ld~-~f~-~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~------- 306 (549)
-|+|+|-+ .+. -+|...|.|.|.. ++..+..-+++ .|..|+.+.-++.||.+-..
T Consensus 617 CE~aGl~qrale~y~d~~dikR~~~~--------~~~~~~~~l~~--------~fg~l~~~~s~~~l~~~l~~n~~qnlq 680 (1630)
T 1xi4_A 617 CEKAGLLQRALEHFTDLYDIKRAVVH--------THLLNPEWLVN--------YFGSLSVEDSLECLRAMLSANIRQNLQ 680 (1630)
T ss_pred HHHcCcHHHHHHhcCCHHHHHHHhhc--------cCcCCHHHHHH--------HHhcCCHHHHHHHHHHHHHHhHhhhhh
Confidence 34666542 111 3567778887652 11222233333 34556678888888877641
Q ss_pred ------CCCCChhhhhhhHHHH-----HHHh-hhcCC--CCCCCCccchHHHHHHHHH
Q 008918 307 ------SPYTTPQDSRQILPSV-----AVLL-KYMPL--RKTGGEEMNFTYVECLLYT 350 (549)
Q Consensus 307 ------s~~~~~~da~~~l~~i-----~~~L-~ymP~--~~~~~~~l~fS~vEcLLya 350 (549)
..|....-+..+++.. |+-| -|+.. +-+.+|+..|-|+||-.=+
T Consensus 681 ~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~ 738 (1630)
T 1xi4_A 681 ICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKT 738 (1630)
T ss_pred hhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHh
Confidence 1121111122222222 3444 34433 1235899999999986443
No 142
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=23.80 E-value=80 Score=29.45 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=46.6
Q ss_pred hHHHHHhhhccccc-ccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHH-------HHhhchHHHHHHHHHhhhcCCCC
Q 008918 83 GVRVQAIRGLPLFC-KDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMS-------LLRQDVKASLTALFKHIGSVDEP 154 (549)
Q Consensus 83 ~IR~qAIk~Lp~lc-k~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~s-------llk~d~k~tL~~lf~qI~~~~e~ 154 (549)
.-.+.++.+|-.+| .+++..++.++-||..|...|=-.|=...+..=.. =-+...+.....++.|+...+|.
T Consensus 84 ~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEE 163 (177)
T 2ful_A 84 EYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESD 163 (177)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHccccc
Confidence 34578899999999 68989999999999999988776666555443100 00001122345677888766444
Q ss_pred C
Q 008918 155 S 155 (549)
Q Consensus 155 ~ 155 (549)
+
T Consensus 164 s 164 (177)
T 2ful_A 164 D 164 (177)
T ss_dssp -
T ss_pred c
Confidence 4
No 143
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=23.70 E-value=3.2e+02 Score=23.63 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.2
Q ss_pred HHHHHhhhhHHhhccCccchH
Q 008918 47 AKQLAAQLIPRFFKFFPDLSS 67 (549)
Q Consensus 47 ~K~LaaQfI~kffk~FP~L~e 67 (549)
...++..|..|+|..+|++..
T Consensus 30 ~~~~g~~~~~rlF~~~P~~k~ 50 (149)
T 2lhb_A 30 YETSGVDILVKFFTSTPAAQE 50 (149)
T ss_dssp HHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHHHHHHHHHCHhHHH
Confidence 356999999999999999974
No 144
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=23.61 E-value=1.2e+02 Score=33.37 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=31.6
Q ss_pred hHHHHHHhhhhccccchhHHHHHhhhcccccccCccc----hhh-HH-HHHHHHHhhchhHHHHHHHHHHHH
Q 008918 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LSK-IV-DILVQLLAAEEIVERDAVHKALMS 131 (549)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck~~~e~----~~r-ia-DVL~QLLqsdd~~E~~~v~~aL~s 131 (549)
.+++|--+++.+...|+..|..|...|..||.+ ++. +.. ++ =+|.++|.+.+...+..+-.+|..
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 334444455555566666666666666666642 222 111 22 234455555555555555444443
No 145
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.03 E-value=18 Score=37.33 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 008918 160 IREKVLSFIRD 170 (549)
Q Consensus 160 vREr~l~Fl~~ 170 (549)
+|..++.||..
T Consensus 37 ~R~~~v~wI~e 47 (358)
T 2pk2_A 37 YRQQAANLLQD 47 (358)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 146
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=21.11 E-value=1.9e+02 Score=26.86 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=56.2
Q ss_pred HHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHhhhcccccc--cCccchhhHHHHHHHHHhhchhHHHHH
Q 008918 47 AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCK--DTPEYLSKIVDILVQLLAAEEIVERDA 124 (549)
Q Consensus 47 ~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAIk~Lp~lck--~~~e~~~riaDVL~QLLqsdd~~E~~~ 124 (549)
.+..+.+.|.+|-..|- .+|.++ .-.+.++.+|-.+|- ++|..++.++-||..|...|=-.|=..
T Consensus 84 ~~~~~~~~l~~~~~ll~-----------~~~~~~--~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~i 150 (189)
T 1paq_A 84 PKDAVVKVFNQWGLLFK-----------RQAFDE--EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVI 150 (189)
T ss_dssp HHHHHHHHHHHHGGGGG-----------GTCCSH--HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHcCc--HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHH
Confidence 44455556666543332 234333 335788888888997 888888899999999988876666555
Q ss_pred HHHHHHHHH--hh-chHHHHHHHHHhhhcCCCCCCh
Q 008918 125 VHKALMSLL--RQ-DVKASLTALFKHIGSVDEPSTD 157 (549)
Q Consensus 125 v~~aL~sll--k~-d~k~tL~~lf~qI~~~~e~~~e 157 (549)
.+..=..-. +. ..+.....++.|+...+|.+++
T Consensus 151 l~W~~~~~~~~~~~~v~~~~~~Fi~WL~eAEeEs~~ 186 (189)
T 1paq_A 151 YKWWDNVSTDPRYDEVKKLTVKWVEWLQNADEESSS 186 (189)
T ss_dssp HHHHHTCCCCGGGHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHHHHhccCccccc
Confidence 544310000 00 1133456678888766554433
No 147
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=20.87 E-value=4.1e+02 Score=23.16 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccc---cchhHHHHHhhhccccc-----ccCccchhh
Q 008918 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE---EELGVRVQAIRGLPLFC-----KDTPEYLSK 105 (549)
Q Consensus 34 Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcED---ed~~IR~qAIk~Lp~lc-----k~~~e~~~r 105 (549)
|++=+..++++... ..+.|..|+|..+|+.+.- |...-|+-.+ .+++++.++.|=+-.|+ -|+++ .
T Consensus 2 ~~~~~a~v~~d~~~--~G~~~l~rlF~~~P~tk~~-F~~f~~~s~~~l~~n~~~~aHg~kV~~al~~~v~~ldd~~---~ 75 (137)
T 3lb2_A 2 FKQDIATIRGDLRT--YAQDIFLAFLNKYPDERRY-FKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCV---P 75 (137)
T ss_dssp HHHHHHHC-CCHHH--HHHHHHHHHHHHSGGGGGG-CTTTTTCCCC-CTTSHHHHHHHHHHHHHHHHHHHHCBTTB---C
T ss_pred chhhHHHHHcCHHH--HHHHHHHHHHHHCHHHHHH-hHHcCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCHH---H
Confidence 55666777777554 8899999999999998642 2212233222 24788888877766664 23332 2
Q ss_pred HHHHHHHHHhh-----chhHHHHHHHHHHHHHHhh
Q 008918 106 IVDILVQLLAA-----EEIVERDAVHKALMSLLRQ 135 (549)
Q Consensus 106 iaDVL~QLLqs-----dd~~E~~~v~~aL~sllk~ 135 (549)
+...|.+|=.. =+|.-...+..+|+..|..
T Consensus 76 l~~~l~~L~~~H~~~gV~p~~F~~l~~~ll~~L~~ 110 (137)
T 3lb2_A 76 LASDANTLVQMKQHSSLTTGNFEKLFVALVEYMRA 110 (137)
T ss_dssp CHHHHHHHHHCGGGTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 33333333222 2445566666666665553
Done!