BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008919
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 48 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLA 107
E I + + ++FG F Q ++P VD +G+ L + P P GHG ++K
Sbjct: 106 EEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDF-NGKILYEKKDKPYMAPNGHGGLFKAL 164
Query: 108 HDKGIFKWFHDNGRKGATVRQVSNVV 133
D GI ++ ++ G K + V N++
Sbjct: 165 KDNGILEFMNEKGIKYSVAHNVDNIL 190
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 26 KLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW 85
K YG +CI P IMTS E + ++FG + + F+Q ++PA+ + DG+
Sbjct: 152 KYYGNKCIIPWYIMTSG--RTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAM-SFDGKI 208
Query: 86 LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVXXXXXXXXXXXG 145
++ P G+G +++ + I + G V V N++ G
Sbjct: 209 ILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL--VKVADPRFIG 266
Query: 146 IGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTE 193
+ G G A + TE + V+ +DG + +EY+E
Sbjct: 267 FCIQKGADCG-AKVVEKTNPTEPVGVVCR---VDGVY----QVVEYSE 306
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 26 KLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW 85
K YG +CI P IMTS E + ++FG + + F+Q ++PA+ + DG+
Sbjct: 152 KYYGNKCIIPWYIMTSG--RTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAM-SFDGKI 208
Query: 86 LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVXXXXXXXXXXXG 145
++ P G+G +++ + I + G V V N++ G
Sbjct: 209 ILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL--VKVADPRFIG 266
Query: 146 IGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTE 193
+ G G A + TE + V+ +DG + +EY+E
Sbjct: 267 FCIQKGADCG-AKVVEKTNPTEPVGVVCR---VDGVY----QVVEYSE 306
>pdb|1PX5|A Chain A, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
pdb|1PX5|B Chain B, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
Length = 349
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 40/108 (37%)
Query: 249 PIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTS 308
P +D F + H +P ++ D RC++G D + V
Sbjct: 7 PARDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKG 66
Query: 309 SAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKY 356
+ + R AD+ + T SF D LR + + + +L + K+
Sbjct: 67 TTLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKF 114
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 9/138 (6%)
Query: 38 IMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCK- 96
IMTS N S +FG F Q +P + + G +++ +C+
Sbjct: 167 IMTSGPTRNATE--SFFIENNYFGLNSHQVIFFNQGTLPCFNLQ-GNKILLELKNSICQS 223
Query: 97 PGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVXXXXXXXXXXXGIGLHHGKKLGF 156
P G+G ++K D GI + G K + V N + IG KK
Sbjct: 224 PDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIF----IGFAIAKKFDL 279
Query: 157 AS-CKRSSGATEGINVLI 173
A+ R A E + +++
Sbjct: 280 ATKVVRKRDANESVGLIV 297
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 457 CGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGN 510
G N H + E + + GN F DVTL+G + DGHK+ I +G+
Sbjct: 420 SGFNARIPHIPKIVELDHLTITGNV-FLGKDVTLRGTVIIVCSDGHKIDIPNGS 472
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,594,210
Number of Sequences: 62578
Number of extensions: 769348
Number of successful extensions: 1347
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1343
Number of HSP's gapped (non-prelim): 9
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)