Query 008919
Match_columns 548
No_of_seqs 252 out of 667
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 18:13:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 1.2E-97 3E-102 820.7 41.0 439 1-484 150-613 (615)
2 cd06424 UGGPase UGGPase cataly 100.0 2.1E-74 4.5E-79 593.2 24.8 284 1-307 22-315 (315)
3 PLN02474 UTP--glucose-1-phosph 100.0 6.8E-72 1.5E-76 598.9 31.4 350 1-430 101-457 (469)
4 PLN02435 probable UDP-N-acetyl 100.0 6.6E-72 1.4E-76 602.1 27.6 320 5-368 145-472 (493)
5 PTZ00339 UDP-N-acetylglucosami 100.0 3.4E-67 7.3E-72 566.6 28.2 327 1-369 128-464 (482)
6 PF01704 UDPGP: UTP--glucose-1 100.0 1.6E-66 3.5E-71 554.9 23.1 332 1-408 78-420 (420)
7 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 4E-64 8.8E-69 521.6 23.0 279 1-307 37-323 (323)
8 cd00897 UGPase_euk Eukaryotic 100.0 4.4E-62 9.5E-67 500.1 21.9 261 1-309 25-290 (300)
9 KOG2638 UDP-glucose pyrophosph 100.0 1.3E-58 2.8E-63 477.5 25.6 350 2-429 126-482 (498)
10 KOG2388 UDP-N-acetylglucosamin 100.0 9.3E-60 2E-64 497.0 17.5 319 5-368 126-450 (477)
11 COG4284 UDP-glucose pyrophosph 100.0 3.8E-51 8.3E-56 432.7 20.6 302 1-347 127-435 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 5E-50 1.1E-54 406.4 22.7 211 1-232 22-241 (266)
13 COG1207 GlmU N-acetylglucosami 93.2 16 0.00035 40.3 21.1 163 2-233 25-189 (460)
14 PRK05293 glgC glucose-1-phosph 89.0 17 0.00036 38.7 16.3 173 1-232 28-205 (380)
15 TIGR02092 glgD glucose-1-phosp 87.0 10 0.00023 40.1 13.2 173 1-232 27-203 (369)
16 cd04181 NTP_transferase NTP_tr 85.5 31 0.00067 32.9 14.6 155 1-227 23-177 (217)
17 cd06915 NTP_transferase_WcbM_l 83.9 41 0.00089 32.1 16.2 157 1-230 23-180 (223)
18 TIGR03808 RR_plus_rpt_1 twin-a 81.5 12 0.00027 41.4 10.8 71 436-511 141-218 (455)
19 PRK02862 glgC glucose-1-phosph 79.8 73 0.0016 34.8 16.3 190 1-233 28-226 (429)
20 cd04197 eIF-2B_epsilon_N The N 79.2 45 0.00097 32.5 13.2 113 1-157 25-142 (217)
21 cd06428 M1P_guanylylT_A_like_N 78.8 74 0.0016 31.8 15.6 164 1-230 25-190 (257)
22 cd04189 G1P_TT_long G1P_TT_lon 78.0 63 0.0014 31.5 13.9 48 1-62 25-72 (236)
23 PRK14359 glmU bifunctional N-a 78.0 62 0.0014 34.8 15.0 157 1-232 24-180 (430)
24 PF00483 NTP_transferase: Nucl 77.1 37 0.0008 33.3 12.0 166 1-232 24-192 (248)
25 TIGR01208 rmlA_long glucose-1- 76.1 69 0.0015 33.7 14.4 157 1-228 24-180 (353)
26 PRK15480 glucose-1-phosphate t 75.3 1E+02 0.0022 32.1 15.2 159 1-229 28-186 (292)
27 PLN02241 glucose-1-phosphate a 75.2 97 0.0021 33.9 15.7 193 1-232 28-231 (436)
28 cd06425 M1P_guanylylT_B_like_N 74.8 88 0.0019 30.6 14.3 160 1-230 25-186 (233)
29 PRK14360 glmU bifunctional N-a 74.1 77 0.0017 34.4 14.5 164 1-232 23-186 (450)
30 TIGR01207 rmlA glucose-1-phosp 73.0 95 0.0021 32.1 14.2 158 1-228 24-181 (286)
31 PRK14352 glmU bifunctional N-a 71.8 96 0.0021 34.3 14.8 164 1-232 26-191 (482)
32 PRK05450 3-deoxy-manno-octulos 70.4 1.1E+02 0.0025 30.0 16.8 170 1-232 21-194 (245)
33 cd02540 GT2_GlmU_N_bac N-termi 69.5 1.1E+02 0.0024 29.5 14.5 162 1-232 20-182 (229)
34 PRK14355 glmU bifunctional N-a 65.6 1.6E+02 0.0036 32.1 14.9 162 1-232 25-188 (459)
35 PRK14357 glmU bifunctional N-a 64.9 96 0.0021 33.7 12.8 157 1-232 22-179 (448)
36 cd02538 G1P_TT_short G1P_TT_sh 64.4 1.4E+02 0.0031 29.2 13.0 156 1-227 25-181 (240)
37 PF14134 DUF4301: Domain of un 64.2 5.9 0.00013 44.2 3.2 59 66-134 235-296 (513)
38 PRK00725 glgC glucose-1-phosph 62.7 2.4E+02 0.0051 30.8 15.4 179 1-232 40-224 (425)
39 PRK00844 glgC glucose-1-phosph 62.0 2.3E+02 0.005 30.6 15.1 181 1-232 30-212 (407)
40 COG5608 LEA14-like dessication 62.0 54 0.0012 31.4 8.6 76 401-487 46-140 (161)
41 PRK14353 glmU bifunctional N-a 60.9 2.2E+02 0.0048 30.8 14.7 162 1-232 27-189 (446)
42 cd02508 ADP_Glucose_PP ADP-glu 59.8 90 0.002 29.9 10.3 118 1-156 23-143 (200)
43 TIGR01173 glmU UDP-N-acetylglu 57.7 1.4E+02 0.003 32.2 12.5 42 1-56 22-63 (451)
44 PRK14358 glmU bifunctional N-a 54.0 2.6E+02 0.0056 31.1 14.0 125 1-181 29-154 (481)
45 PLN02917 CMP-KDO synthetase 53.2 2E+02 0.0043 30.0 12.2 167 1-232 66-237 (293)
46 TIGR02091 glgC glucose-1-phosp 52.7 3E+02 0.0065 28.9 14.3 178 1-232 23-206 (361)
47 PF10162 G8: G8 domain; Inter 52.6 78 0.0017 28.7 8.0 69 386-482 16-86 (125)
48 PRK14356 glmU bifunctional N-a 52.4 3E+02 0.0064 29.9 14.0 162 1-232 27-189 (456)
49 cd02509 GDP-M1P_Guanylyltransf 50.1 1.5E+02 0.0033 30.2 10.7 175 1-233 26-208 (274)
50 cd06426 NTP_transferase_like_2 48.4 2.5E+02 0.0055 26.8 15.6 154 1-230 23-176 (220)
51 TIGR03808 RR_plus_rpt_1 twin-a 46.6 2.6E+02 0.0056 31.4 12.1 95 440-541 116-220 (455)
52 cd02524 G1P_cytidylyltransfera 38.3 4.1E+02 0.0089 26.4 15.5 170 1-228 23-197 (253)
53 PRK14354 glmU bifunctional N-a 37.5 5.7E+02 0.012 27.7 14.4 160 1-232 24-185 (458)
54 cd02513 CMP-NeuAc_Synthase CMP 36.0 3.8E+02 0.0082 25.6 10.5 38 120-158 97-134 (223)
55 cd02517 CMP-KDO-Synthetase CMP 34.7 4.4E+02 0.0095 25.6 16.7 165 1-232 20-191 (239)
56 COG1861 SpsF Spore coat polysa 34.3 48 0.001 33.7 3.9 47 1-58 22-68 (241)
57 PF10988 DUF2807: Protein of u 32.9 4.1E+02 0.0088 24.7 10.6 50 469-518 123-180 (181)
58 PF05726 Pirin_C: Pirin C-term 32.7 1.4E+02 0.0029 26.1 6.1 67 468-538 18-87 (104)
59 PF13344 Hydrolase_6: Haloacid 31.9 88 0.0019 27.2 4.8 54 5-68 11-64 (101)
60 PF04962 KduI: KduI/IolB famil 31.2 1.7E+02 0.0037 30.2 7.4 61 461-521 38-110 (261)
61 PRK00924 5-keto-4-deoxyuronate 30.9 2.5E+02 0.0055 29.4 8.6 80 440-519 44-130 (276)
62 cd06422 NTP_transferase_like_1 30.8 91 0.002 30.1 5.2 47 1-62 24-70 (221)
63 cd04198 eIF-2B_gamma_N The N-t 30.6 4.1E+02 0.0089 25.7 9.8 111 1-158 25-135 (214)
64 cd02523 PC_cytidylyltransferas 29.5 5.2E+02 0.011 24.9 11.2 42 1-56 23-64 (229)
65 PRK00742 chemotaxis-specific m 29.0 87 0.0019 33.0 5.1 43 486-528 225-267 (354)
66 PRK13368 3-deoxy-manno-octulos 28.6 5.5E+02 0.012 24.9 16.3 84 1-136 21-104 (238)
67 TIGR02180 GRX_euk Glutaredoxin 27.4 2.9E+02 0.0062 21.9 6.9 56 34-116 28-83 (84)
68 PF02348 CTP_transf_3: Cytidyl 25.7 74 0.0016 30.6 3.6 21 1-21 18-38 (217)
69 PF14134 DUF4301: Domain of un 25.7 70 0.0015 36.0 3.7 118 160-308 383-506 (513)
70 PF06865 DUF1255: Protein of u 25.6 1.3E+02 0.0028 26.5 4.6 34 472-509 51-84 (94)
71 PF04314 DUF461: Protein of un 25.5 1.6E+02 0.0035 26.0 5.4 47 495-543 62-109 (110)
72 COG1535 EntB Isochorismate hyd 25.4 3.7E+02 0.0081 26.7 8.1 100 7-129 50-151 (218)
73 KOG2107 Uncharacterized conser 23.5 91 0.002 30.3 3.5 50 461-510 84-142 (179)
74 PRK10579 hypothetical protein; 23.3 1.2E+02 0.0026 26.8 3.9 33 472-508 51-83 (94)
75 TIGR02623 G1P_cyt_trans glucos 23.1 7.6E+02 0.016 24.6 15.3 170 1-227 24-195 (254)
76 cd02859 AMPKbeta_GBD_like AMP- 22.7 1.9E+02 0.0042 23.9 5.1 51 474-539 5-57 (79)
77 smart00613 PAW domain present 22.5 2.2E+02 0.0048 24.7 5.4 52 425-483 22-87 (89)
78 COG2266 GTP:adenosylcobinamide 22.4 1.1E+02 0.0024 30.0 3.9 43 1-58 21-63 (177)
79 COG0448 GlgC ADP-glucose pyrop 22.4 5.7E+02 0.012 28.2 9.7 98 113-233 111-210 (393)
80 smart00728 ChW Clostridial hyd 22.3 84 0.0018 23.9 2.5 35 447-481 2-38 (46)
81 COG0662 {ManC} Mannose-6-phosp 22.1 1.8E+02 0.004 26.2 5.2 48 463-511 51-100 (127)
82 PF07538 ChW: Clostridial hydr 21.8 87 0.0019 22.4 2.4 32 448-479 2-35 (36)
83 smart00328 BPI1 BPI/LBP/CETP N 21.7 1.5E+02 0.0034 29.3 5.0 65 475-546 36-102 (225)
84 COG2201 CheB Chemotaxis respon 21.4 1.3E+02 0.0028 32.6 4.6 66 457-529 192-261 (350)
85 PF13356 DUF4102: Domain of un 21.4 1.5E+02 0.0033 24.9 4.3 30 511-545 23-52 (89)
86 COG1208 GCD1 Nucleoside-diphos 21.2 1.4E+02 0.003 32.0 4.9 158 1-228 26-184 (358)
87 COG1212 KdsB CMP-2-keto-3-deox 20.9 2.2E+02 0.0047 29.2 5.8 68 4-79 25-106 (247)
88 TIGR00454 conserved hypothetic 20.5 84 0.0018 30.3 2.8 42 1-56 21-62 (183)
89 PF13106 DUF3961: Domain of un 20.5 57 0.0012 24.3 1.2 14 57-70 4-20 (40)
90 PRK09451 glmU bifunctional N-a 20.0 1.1E+03 0.025 25.5 12.9 157 1-232 27-185 (456)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=1.2e-97 Score=820.71 Aligned_cols=439 Identities=23% Similarity=0.316 Sum_probs=394.9
Q ss_pred CCCC---CCCchhHHHHHHHHHHHHHhHHhcC-CcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCcee
Q 008919 1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVP 76 (548)
Q Consensus 1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g-~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP 76 (548)
+||+ +|+||||++++||+++|++|.++.+ ..+.||||||||+ +||++|++||++|+|||++++||+||+|+++|
T Consensus 150 ~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~--~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P 227 (615)
T PLN02830 150 ALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD--DTHARTLKLLERNDYFGMDPDQVTLLKQEKVA 227 (615)
T ss_pred ceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCc--chhHHHHHHHHHCCccCCCccceEEEEcCcce
Confidence 4665 6999999999999999999987553 5589999999999 79999999999999999999999999999999
Q ss_pred EEecCCCeeeeec--CCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCc
Q 008919 77 AVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKK 153 (548)
Q Consensus 77 ~l~~~dg~~~l~~--~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~ 153 (548)
|+++++|++++++ +++++|+||||||||+||++||+|++|+++|+||+|||||||+|+++ ||. |+|+++.++++
T Consensus 228 ~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~---flG~~~~~~~d 304 (615)
T PLN02830 228 CLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPA---ALGVSATKGFD 304 (615)
T ss_pred eEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHH---HhHHHHhcCCc
Confidence 9998889999986 88999999999999999999999999999999999999999999998 885 48999999999
Q ss_pred eeEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccc----cCCCCCCCCCcccccccceeeEEEeHHHHHh
Q 008919 154 LGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG----ITRGPFSSNGLQADFPANTNILYVDLASAEL 229 (548)
Q Consensus 154 ~~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~----~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~ 229 (548)
|++++|+| .+.|++|++|+.++.||++ +++||||+|++++. .++++..+++++|.|||||||||++|++|++
T Consensus 305 ~~~kvv~K--~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~ 380 (615)
T PLN02830 305 MNSLAVPR--KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVK 380 (615)
T ss_pred eEEEEEEC--CCCcccceEEEEecCCCCe--eeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHH
Confidence 99998655 4678999999855678873 56899999999883 3556777788899999999999999999999
Q ss_pred hhccccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcch
Q 008919 230 VGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSS 309 (548)
Q Consensus 230 ~l~~~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~ 309 (548)
+++. +.+.+|+++ ||| |+|.+ .+.++.++|||||||||++++.. .++|||++++||.+|+||||++++
T Consensus 381 ~l~~-~~~~lp~iv-NpK----~~d~~-~~v~q~~trle~~mq~f~~~~~~-----~~~vg~~v~~~~~~f~PVKn~~s~ 448 (615)
T PLN02830 381 ELAK-TGGVIEEFV-NPK----YKDAT-KTAFKSPTRLECMMQDYPKTLPP-----SAKVGFTVFDNWLAYSPVKNSPAD 448 (615)
T ss_pred HHHh-CCCccceec-cCc----ccCCC-CceeecchHHHHHHHHHhhhcCc-----ccccCceecCchheeccccCChHH
Confidence 9986 788999865 998 89877 46899999999999999999952 357899999999999999999999
Q ss_pred hhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCcc----CCCccccCCCCeEEEeCCCccccHHHHhccc-CC
Q 008919 310 AKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE----GNDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG 384 (548)
Q Consensus 310 a~~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~----~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~-~~ 384 (548)
|++|++++ + +++||+|+++|+|++++++|+.+|+.+.++. .++++++.+|+ |.|+|+|+++++++++|| ++
T Consensus 449 a~~k~~~~-~-~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~ 524 (615)
T PLN02830 449 GAAKVPEG-N-PTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPR--IVLKPAFALTFSELKKKVAPG 524 (615)
T ss_pred hhhhcccC-C-CccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCe--EEECchhhhHHHHHHHHhcCC
Confidence 99998876 4 5669999999999999999999888876543 56888888996 999999999999999999 76
Q ss_pred -CccCCCcEEEEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcceeeccceeceEEEeeeEEeeCcEeeeeCCC---
Q 008919 385 -GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--- 460 (548)
Q Consensus 385 -~si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~G~~~~~~~~--- 460 (548)
+||+++|+|+|+|+++||+||+|||+|+|.|.. |+ +|+|+|++|+|+||+|++++.
T Consensus 525 ~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~--~~------------------~~~i~g~~v~N~g~~~~~~~~~~~ 584 (615)
T PLN02830 525 SVKISQRSTLVLEGADIVIENLSLDGALVVRAVP--GA------------------EVTVGGLRVKNKGWTWEPVDKGTS 584 (615)
T ss_pred CCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCC--CC------------------eEEecCeEEecCCcEEEecCCCCC
Confidence 799999999999999999999999999999987 54 789999999999999999653
Q ss_pred -----ccccccceeeeEEEEEEeccceeE
Q 008919 461 -----TYWKHDVQWFEALKVILHGNAEFE 484 (548)
Q Consensus 461 -----~~w~~~~~r~e~~~i~~~g~~~f~ 484 (548)
.+....+.|.|..++++.-+|.|.
T Consensus 585 ~~~~~~irg~~~~~~e~~~~~~~~~g~~~ 613 (615)
T PLN02830 585 APEEIRIRGFVIKKVETAELVFDKPGKYT 613 (615)
T ss_pred cchhhhhcceeEeeeeeEEEEecCCCcee
Confidence 377889999999999999888874
No 2
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=2.1e-74 Score=593.20 Aligned_cols=284 Identities=23% Similarity=0.280 Sum_probs=252.1
Q ss_pred CCCC---CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeE
Q 008919 1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPA 77 (548)
Q Consensus 1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~ 77 (548)
|||+ +|+||||+++|||+++|++|.+.++ +.||||||||+ +||++|++||++|+|||++++||+||+|+++||
T Consensus 22 ~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~--~~IPl~IMTS~--~Th~~T~~~fe~n~yFGl~~~~V~fF~Q~~~P~ 97 (315)
T cd06424 22 GLPVELTTNTTYLQYYLNYIRAFQEASKKGEK--MEIPFVIMTSD--DTHSKTLKLLEENNYFGLEKDQVHILKQEKVFC 97 (315)
T ss_pred eeeccCCCCCcHHHHHHHHHHHHHHHhhccCC--CceeEEEECCC--chhHHHHHHHHHCCccCCCcccEEEEecCceEE
Confidence 5676 7999999999999999999876555 89999999999 799999999999999999999999999999999
Q ss_pred EecCCCee--eeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCce
Q 008919 78 VDAEDGQW--LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKL 154 (548)
Q Consensus 78 l~~~dg~~--~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~ 154 (548)
+++.+|++ .++++++++|+||||||||+||++||+||+|+++|+||++|+||||+|+++ ||. |+|+++.+++++
T Consensus 98 l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~adP~---fiG~~~~~~~d~ 174 (315)
T cd06424 98 LIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKAIPA---VLGVSATKSLDM 174 (315)
T ss_pred EecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhccChh---hEEEEecCCCce
Confidence 98778999 467899999999999999999999999999999999999999999999998 995 599999999999
Q ss_pred eEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCcccc----CCCCCCCCCcccccccceeeEEEeHHHHHhh
Q 008919 155 GFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGI----TRGPFSSNGLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 155 ~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~----~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
++++|+|+ +.|+||++|+.++.||+ +.++|||||||+++.. .+++.++.+++|.||||||+|+|+|++|.++
T Consensus 175 ~~k~v~~~--~~E~vG~~~~~~~~~g~--~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi~~~~f~l~~~~~~ 250 (315)
T cd06424 175 NSLTVPRK--PKEAIGALCKLTKNNGK--SMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNINQLVFSLGPYMDE 250 (315)
T ss_pred EeEEEeCC--CCCceeeEEEEecCCCc--eEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCeeeeEEEeHHHHHHH
Confidence 99987654 57899999975457787 3456799999998742 2233444677899999999999999999999
Q ss_pred hccccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCc
Q 008919 231 GSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 307 (548)
Q Consensus 231 l~~~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~ 307 (548)
+++ +.+.+|+|+ ||| |.|.+ .+.+++|+|||||||||+++|+. ..++++++++||.|||||||++
T Consensus 251 l~~-~~~~~~~~~-n~k----y~d~~-~~~~~~p~rlE~~m~D~~~~f~~-----~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 251 LEK-TKGAIPEFI-NPK----YKDAT-KTAFKSPTRLECMMQDIPLLFEE-----DYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred Hhh-ccccCeeee-cCC----cccCC-CCeecCchHHHHHHHHHHHhhcc-----cceeEEEEEchhhcccccCCCC
Confidence 986 678899988 766 99987 35789999999999999999963 4688999999999999999963
No 3
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=6.8e-72 Score=598.95 Aligned_cols=350 Identities=19% Similarity=0.203 Sum_probs=303.8
Q ss_pred CCCC-CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPY-CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpv-sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|+ +|+||||++++||+++++ +|| +.|||+||||+ +||++|++||++|+||+ .+|++|+|+++||++
T Consensus 101 ~i~v~~~~sfldl~~~qi~~l~~----~~g--~~vPl~iMtS~--~T~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~ 169 (469)
T PLN02474 101 VIEVRNGLTFLDLIVIQIENLNK----KYG--CNVPLLLMNSF--NTHDDTQKIVEKYTNSN---IEIHTFNQSQYPRVV 169 (469)
T ss_pred eEEcCCCCcHHHHHHHHHHHHHH----HcC--CCceEEEECCC--chhHHHHHHHHHcCCCc---cceEEEecCceeeEe
Confidence 4677 799999999999999998 788 99999999999 79999999999999985 589999999999999
Q ss_pred cCCCeeeeecCC---CCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 80 AEDGQWLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 80 ~~dg~~~l~~~~---~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
.+|+++++.++ ..+|+||||||+|.+|++||+||+|+++|+||+||+|+||+++.+||.| +||++.+++++.+
T Consensus 170 -~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~---lg~~~~~~~e~~~ 245 (469)
T PLN02474 170 -ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKI---LNHLIQNKNEYCM 245 (469)
T ss_pred -cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHH---HHHHHhcCCceEE
Confidence 55888887554 5669999999999999999999999999999999999999888789976 8999999999999
Q ss_pred EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcccc
Q 008919 157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN 235 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~ 235 (548)
++ ++|+.+++|+|+||. .||+ ++++||+|+|++.. + ..++ ..+|++ |||||||+|+||+++++.
T Consensus 246 ev-~~Kt~~d~kgG~l~~---~dgk----~~lvEysqvp~e~~-~--~f~~--~~kf~~fNtnn~w~~L~~l~~~~~~-- 310 (469)
T PLN02474 246 EV-TPKTLADVKGGTLIS---YEGK----VQLLEIAQVPDEHV-N--EFKS--IEKFKIFNTNNLWVNLKAIKRLVEA-- 310 (469)
T ss_pred EE-eecCCCCCCccEEEE---ECCE----EEEEEEecCCHHHH-H--hhcc--cccceeeeeeeEEEEHHHHHHHhhc--
Confidence 96 677889999999997 7999 99999999999862 1 1234 449998 999999999999999863
Q ss_pred CCCccccc-cccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhhh
Q 008919 236 ERSLPGMV-LNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKR 314 (548)
Q Consensus 236 ~~~lp~~i-an~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k~ 314 (548)
+.||+|+ .||| ++| | .+.+|||++|+|++.+|.+ ...++++|. +|+||||+.
T Consensus 311 -~~l~~~~I~n~k----~~~--g----~kv~q~Et~ig~ai~~f~~--------~~~v~VpR~-rF~PVK~~~------- 363 (469)
T PLN02474 311 -DALKMEIIPNPK----EVD--G----VKVLQLETAAGAAIRFFDN--------AIGINVPRS-RFLPVKATS------- 363 (469)
T ss_pred -CCCCceeecCCC----CCC--C----eeEEEeHHHHHHHHHhCCC--------ceEEEEchh-hccCCCCCC-------
Confidence 4588775 5655 444 2 4789999999999999853 234567776 499999984
Q ss_pred cccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCccCCCccccCCCCeEEEeCCCccccHHHHhcccCC-CccCCCcEE
Q 008919 315 KRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSEL 393 (548)
Q Consensus 315 ~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~-~si~~~s~L 393 (548)
+|.+++.|+|..+..|+..+|...- ...| .|.|+|. ++++++|.+||++ |||.++++|
T Consensus 364 ---------dll~~rsdly~l~~~~l~~~~~~~~---------~~~p--~IeL~~~-f~~v~~f~~rf~~iPsl~~~d~L 422 (469)
T PLN02474 364 ---------DLLLVQSDLYTLVDGFVIRNKARTN---------PSNP--SIELGPE-FKKVANFLSRFKSIPSIVELDSL 422 (469)
T ss_pred ---------CHHHHHHHHHHhccCeEEecCcccC---------CCCC--cEEECcc-cccHHhHHHhcCCCCCcccCCeE
Confidence 4668999999999999988776421 1246 4999998 8999999999998 899999999
Q ss_pred EEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcc
Q 008919 394 QIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGES 430 (548)
Q Consensus 394 ~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~ 430 (548)
+|+|+++|++||+|.|+|+|.|.. |.+...|+|..
T Consensus 423 tV~Gdv~fG~~v~l~G~v~i~~~~--~~~~~ip~g~~ 457 (469)
T PLN02474 423 KVSGDVWFGSGIVLKGKVTITAKS--GVKLEIPDGAV 457 (469)
T ss_pred EEeeeeEECCCcEEEEEEEEEcCC--CCeeecCCCcE
Confidence 999999999999999999999998 88888899874
No 4
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=6.6e-72 Score=602.08 Aligned_cols=320 Identities=18% Similarity=0.206 Sum_probs=278.4
Q ss_pred CCCchhHHHHHHHHHHHHHhHHhcC----CcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 5 CGRTLLEGLIRDLQAREFLYFKLYG----KQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 5 sgksllql~~e~I~~lq~la~~~~g----~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
++|||||+++|||+++|++|.+++| ..+.||||||||+ .||++|++||++|+|||++++||+||+|+++||++
T Consensus 145 s~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~--~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~- 221 (493)
T PLN02435 145 SGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSP--FTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS- 221 (493)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCc--chhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-
Confidence 8999999999999999999987653 4588999999999 69999999999999999999999999999999998
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.+|+++++++.+++|+||||||||.||++||+|++|+++|+||+|||||||+|+++ ||.| +|+++.++.++++++
T Consensus 222 ~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~f---lG~~~~~~~d~~~kV- 297 (493)
T PLN02435 222 KDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTF---LGYFIDKGVASAAKV- 297 (493)
T ss_pred CCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHH---HHHHHhcCCceEEEe-
Confidence 78999999999999999999999999999999999999999999999999999987 9966 899999999999995
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCC-CCCccccccc-ceeeEEEeHHHHHhhhccccCC
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-SNGLQADFPA-NTNILYVDLASAELVGSSENER 237 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~-~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~~~ 237 (548)
+||+.++|+||++|+. ..||+ ++||||||++++. ++.+++ +|.+ .|++ |||||||+++||+++.+. ...
T Consensus 298 v~K~~~~EkvG~i~~~-~~~g~----~~vvEYsEl~~~~-~~~~~~~~g~L--~~~~gnI~~h~fs~~fL~~~~~~-~~~ 368 (493)
T PLN02435 298 VRKAYPQEKVGVFVRR-GKGGP----LTVVEYSELDQAM-ASAINQQTGRL--RYCWSNVCLHMFTLDFLNQVANG-LEK 368 (493)
T ss_pred eecCCCCCceeEEEEe-cCCCC----EEEEEeccCCHHH-HhccCcccccc--ccchhhHHHhhccHHHHHHHHHh-hhh
Confidence 8888999999999973 36888 8999999999986 434433 4888 8997 999999999999998753 344
Q ss_pred CccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhhhccc
Q 008919 238 SLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRA 317 (548)
Q Consensus 238 ~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k~~~~ 317 (548)
.+|+|+|. |||||+|.. ++++|||.|++|+|... .+++..+++|..+|||+||+.++.
T Consensus 369 ~l~~H~A~--Kkip~~~~~-----~ngiK~E~FiFDvf~~a--------~~~~~~eV~R~~EFaPlKN~~g~~------- 426 (493)
T PLN02435 369 DSIYHLAE--KKIPSIHGY-----TMGLKLEQFIFDAFPYA--------PSTALFEVLREEEFAPVKNANGSN------- 426 (493)
T ss_pred cCCceeec--cccCccCCC-----cceEEeeeeeecchhhc--------CceEEEEEchhhccCcccCCCCCC-------
Confidence 69999999 999999943 48999999886655432 356788999999999999998753
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHHCCcccCCcc-CCCccccCCCCeEEEeC
Q 008919 318 DMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE-GNDKYIDDGPPYLILLH 368 (548)
Q Consensus 318 ~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~-~~~~~~~~~P~~~v~l~ 368 (548)
.+||+||+.++++++++||+++|+.+.+.. .....+|++|. +.++
T Consensus 427 ----~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~--~sY~ 472 (493)
T PLN02435 427 ----FDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPL--CSYA 472 (493)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCc--eeeC
Confidence 239999999999999999999998774321 11234677884 6665
No 5
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=3.4e-67 Score=566.65 Aligned_cols=327 Identities=17% Similarity=0.160 Sum_probs=278.0
Q ss_pred CCCC---CCCchhHHHHHHHHHHHHHhHHhcC--CcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCce
Q 008919 1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLV 75 (548)
Q Consensus 1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g--~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~v 75 (548)
|+|| +|+||||++++||+++++++.+++| ..+.|||+||||+ .||+.|++||++|+|||++++||+||+|+++
T Consensus 128 ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~--~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~ 205 (482)
T PTZ00339 128 LLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSS--FNHDQTRQFLEENNFFGLDKEQVIFFKQSSL 205 (482)
T ss_pred EeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCc--chHHHHHHHHHhccccCCCcccEEEEecCCc
Confidence 5677 7999999999999999998876665 3578999999999 6999999999999999999999999999999
Q ss_pred eEEecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCC-c
Q 008919 76 PAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGK-K 153 (548)
Q Consensus 76 P~l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~-~ 153 (548)
||++.++|+++++++++++|+|+||||||.||++||+|++|+++|+||+||+||||+|+++ ||.| +|+++..++ +
T Consensus 206 P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~f---lG~~~~~~~~~ 282 (482)
T PTZ00339 206 PCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEF---IGLASSFPAHD 282 (482)
T ss_pred ceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHH---hHHHHHCCchh
Confidence 9999778999999999999999999999999999999999999999999999999999997 9966 899999999 8
Q ss_pred eeEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCC-CCCccccccc-ceeeEEEeHHHHHhhh
Q 008919 154 LGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-SNGLQADFPA-NTNILYVDLASAELVG 231 (548)
Q Consensus 154 ~~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~-~g~l~s~f~~-Ninnl~~~L~~l~~~l 231 (548)
++.++ + |+.++|+||++|+ .||+ +++|||+|++++. ++.+.. +|. ..|.+ |||||||+++||++++
T Consensus 283 ~~~kv-v-k~~~~EkvG~~~~---~~g~----~~vvEYsEi~~~~-~~~~~~~~g~--l~f~~gnI~~h~fsl~fl~~~~ 350 (482)
T PTZ00339 283 VLNKC-V-KREDDESVGVFCL---KDYE----WQVVEYTEINERI-LNNDELLTGE--LAFNYGNICSHIFSLDFLKKVA 350 (482)
T ss_pred heeee-e-cCCCCCceeEEEE---eCCc----ccEEEEeccChhh-hhcccccCCe--ecccccceEEEEEEHHHHHHHh
Confidence 88875 5 5578999999998 6888 8999999999985 433333 354 48876 9999999999999987
Q ss_pred ccccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhh
Q 008919 232 SSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAK 311 (548)
Q Consensus 232 ~~~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~ 311 (548)
+......||+|+|. |||||+|.. ...++++|||.|++|+|... .++++.+++|..+|||+||+.+..
T Consensus 351 ~~~~~~~l~~H~a~--Kkip~~~~~--~~~png~K~E~FiFDvf~~~--------~~~~~~ev~R~~eFsPlKNa~g~~- 417 (482)
T PTZ00339 351 ANRLYESTPYHAAR--KKIPYINGP--TDKTMGIKLEAFIFDIFRYA--------KNVLILEVDREDEFAPIKNADGAA- 417 (482)
T ss_pred hhhhhhcCCceeec--cccCeeCCC--CCCcceeeehhhhhhHHHhc--------cccceeeechhhccccccCCCCCC-
Confidence 52123469999999 999999953 25689999998775544432 356788999999999999998764
Q ss_pred hhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCc-cCCCccccCCCCeEEEeCC
Q 008919 312 KKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEI-EGNDKYIDDGPPYLILLHP 369 (548)
Q Consensus 312 ~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~-~~~~~~~~~~P~~~v~l~p 369 (548)
.+||+||+.++++++++||.++|+.+... ...+..+|++|. |.+.-
T Consensus 418 ----------~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~--~sy~g 464 (482)
T PTZ00339 418 ----------ADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPL--VSYGG 464 (482)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCc--ceeCC
Confidence 24999999999999999999999976431 113345677885 66553
No 6
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.6e-66 Score=554.94 Aligned_cols=332 Identities=23% Similarity=0.282 Sum_probs=256.2
Q ss_pred CCCC-CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPY-CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpv-sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|| +|+||||++++||+++++ +|| +.|||+||||+ +||++|++||++ |||++.+ |++|+|+++||++
T Consensus 78 ~~~v~~~~t~ldl~~~qi~~l~~----~~~--~~iPl~iMtS~--~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~ 146 (420)
T PF01704_consen 78 LIPVREGKTFLDLIVEQIEALNK----KYG--VDIPLYIMTSF--NTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAID 146 (420)
T ss_dssp GSEEETTEEHHHHHHHHHHHHHH----HHT--TT-EEEEEEET--TTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEE
T ss_pred ceecCCcccHHHHHHHHHHHHhc----ccc--ccceEEEecCc--ccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEe
Confidence 5677 899999999999999998 778 99999999999 799999999999 9999877 9999999999999
Q ss_pred cCCCeeeeecCC-----CCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCce
Q 008919 80 AEDGQWLVMRPF-----APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKL 154 (548)
Q Consensus 80 ~~dg~~~l~~~~-----~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~ 154 (548)
.+|+++++.+. ..+|+||||||+|.||++||+||+|+++|+||+||+|+||+++.+||.| +|+++.++++|
T Consensus 147 -~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~---lG~~~~~~~~~ 222 (420)
T PF01704_consen 147 -ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVF---LGYMIEKNADF 222 (420)
T ss_dssp -TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHH---HHHHHHTT-SE
T ss_pred -CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHH---HHHHHhccchh
Confidence 56888887544 2469999999999999999999999999999999999999444459966 89999999999
Q ss_pred eEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcc
Q 008919 155 GFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSS 233 (548)
Q Consensus 155 ~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~ 233 (548)
++++ ++|+.++|++|+||+ .+|+ +++|||+|+|++..++.+.. +.|.. ||||+||+|++|+++++.
T Consensus 223 ~~ev-v~Kt~~dek~Gvl~~---~~G~----~~vvEysqip~~~~~~~~~~-----~~~~~FntnNi~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 223 GMEV-VPKTSPDEKGGVLCR---YDGK----LQVVEYSQIPKEHMAEFKDI-----KGFLLFNTNNIWFSLDFLKRLLER 289 (420)
T ss_dssp EEEE-EE-CSTTTSSEEEEE---ETTE----EEEEEGGGS-HHGHHHHTST-----TTSBEEEEEEEEEEHHHHHHHHHT
T ss_pred heee-eecCCCCCceeEEEE---eCCc----cEEEEeccCCHHHHHhhhcc-----ccceEEEeceeeEEHHHHHHHHHh
Confidence 9996 667789999999997 6899 99999999999953322222 23554 999999999999999986
Q ss_pred ccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhh
Q 008919 234 ENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKK 313 (548)
Q Consensus 234 ~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k 313 (548)
....||+|++. |+|||+|. .++++|||++|++.+..|.+ ...++++| .+|+||||+ ++..
T Consensus 290 -~~~~Lp~h~a~--Kki~~~d~-----~~~~~q~Et~i~~~i~~f~~--------~~~v~V~R-~rF~PvKn~-~dLl-- 349 (420)
T PF01704_consen 290 -DELQLPIHVAK--KKIPYVDN-----GIKVIQFETAIGFAIFQFDN--------SFAVEVPR-DRFAPVKNT-SDLL-- 349 (420)
T ss_dssp -TTCCS-EEEEE--EESSEECT-----EEEEEEEECGGGGGGGGCTS--------EEEEEE-G-GG--B-SSH-HHHH--
T ss_pred -ccccCccEEcc--hhcccccC-----CccEEeehhhhhchHhhccC--------cEEEEEcH-HHcCCcccc-Ccce--
Confidence 56789999988 99999983 36899999999998888742 23447888 889999997 3321
Q ss_pred hcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCcc---CCCccccCCCCeEEEeCCCccccHHHHhcccCC-CccCC
Q 008919 314 RKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE---GNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSK 389 (548)
Q Consensus 314 ~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~---~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~-~si~~ 389 (548)
++++.-+.+.+.. ...+.. ...++|.|++. +++++++.+||+. |||.+
T Consensus 350 -------------------------~~~Sd~y~~~~~~~~~~~~~~~--~~~p~i~lg~~-f~~v~~~~~r~~~ip~l~~ 401 (420)
T PF01704_consen 350 -------------------------LVRSDLYDLDDGTLVRNPLRAF--HTRPLIKLGDH-FKKVDDFEKRFPSIPSLLE 401 (420)
T ss_dssp -------------------------HHHSTTEEEETTEEEEHCCHCS--SCHHEEEECGG-GSSHHHHHHHBSSS-BETT
T ss_pred -------------------------eeccceeccccceeeecccccC--CCCCeeccCcc-cCchHHhhhhcCCCCCccc
Confidence 2222212222111 001111 12337999976 6899999999998 89999
Q ss_pred CcEEEEEeceEEEeceEEE
Q 008919 390 GSELQIEVAEFLWRNVQLD 408 (548)
Q Consensus 390 ~s~L~veG~~~~~~~v~ld 408 (548)
+++|+|.|+++|++||.|+
T Consensus 402 ~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 402 LDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp EEEEEEESSEEE-TT-EEE
T ss_pred CCcceEecceEECCCcEeC
Confidence 9999999999999999985
No 7
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=4e-64 Score=521.64 Aligned_cols=279 Identities=24% Similarity=0.314 Sum_probs=249.5
Q ss_pred CCCC---CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeE
Q 008919 1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPA 77 (548)
Q Consensus 1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~ 77 (548)
|+|+ +|+||||+++++|++++.++.+.+|+++.|||+||||+ +||++|++||++++|||+++++|++|+|+++||
T Consensus 37 l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~--~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~ 114 (323)
T cd04193 37 MFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE--ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPC 114 (323)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh--hHhHHHHHHHHhCCcCCCCCceEEEEecCceee
Confidence 4677 48999999999999999999888888899999999998 699999999999999999999999999999999
Q ss_pred EecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeE
Q 008919 78 VDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 78 l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~ 156 (548)
++ .+|+++++++++++|+|+||||+|.+|++||+|++|+++|+||++|+||||+|+++ ||.| +|+++.+++++++
T Consensus 115 ~~-~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~---lG~~~~~~~~~~~ 190 (323)
T cd04193 115 VD-FDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVF---IGFCISKGADVGA 190 (323)
T ss_pred Ec-CCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccCHHH---hHHHHHcCCceEE
Confidence 98 67999999999999999999999999999999999999999999999999999886 9965 8999999999999
Q ss_pred EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcccc
Q 008919 157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN 235 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~ 235 (548)
++ ++|+.++|++|++|. .||+ +++|||+|+|++. .+...++|.+ .|.. |||+|+|+|+||+++++. .
T Consensus 191 kv-v~k~~~~ekvG~l~~---~~g~----~~vvEysel~~~~-~~~~~~~g~l--~f~~~ni~~~~fsl~fl~~~~~~-~ 258 (323)
T cd04193 191 KV-VRKRYPTEKVGVVVL---VDGK----PQVVEYSEISDEL-AEKRDADGEL--QYNAGNIANHFFSLDFLEKAAEM-E 258 (323)
T ss_pred EE-EECCCCCCceeEEEE---ECCe----EEEEEeecCCHHH-HhccCcCCcE--ecccchHhhheeCHHHHHHHHhh-c
Confidence 96 667789999999997 6899 8999999999997 3444556776 6765 999999999999999875 3
Q ss_pred CCCccccccccCCCceeecCCCCc---cccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCc
Q 008919 236 ERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 307 (548)
Q Consensus 236 ~~~lp~~ian~KKkipy~D~~g~~---~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~ 307 (548)
...||+|++. |||||+|..|.. +.++++|||+||+|++..+. ++..++++|..+|+||||++
T Consensus 259 ~~~l~~h~a~--Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~--------~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 259 EPSLPYHIAK--KKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAK--------NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred cccCCceEec--cccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCC--------ceEEEEEChhhccccCcCCC
Confidence 4479999988 999999976543 35678999999988877763 45678899999999999973
No 8
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=4.4e-62 Score=500.09 Aligned_cols=261 Identities=20% Similarity=0.231 Sum_probs=227.4
Q ss_pred CCCC-CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPY-CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpv-sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|| +|+||||++++||+++++ .+| +.||||||||+ +||++|++||++|++ +++||++|+|+++||++
T Consensus 25 ~~~v~~~~s~l~l~~~~i~~l~~----~~~--~~iPl~iMtS~--~T~~~T~~~l~~~~~---~~~~v~~F~Q~~~P~~~ 93 (300)
T cd00897 25 LIEVRDGKTFLDLTVQQIEHLNK----TYG--VDVPLVLMNSF--NTDEDTKKILKKYAG---VNVDIHTFNQSRYPRIS 93 (300)
T ss_pred eeecCCCCcHHHHHHHHHHHHHH----HcC--CCceEEEECCC--cchHHHHHHHHHcCC---CccCeEEEecCCcccCc
Confidence 5777 899999999999999998 778 99999999999 699999999999886 78899999999999999
Q ss_pred cCCCeeeee---cCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 80 AEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 80 ~~dg~~~l~---~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
.+|+++++ ++++++|+|+||||+|.||++||+|++|+++|+||++|+||||+++.+||.| +||++.+++++++
T Consensus 94 -~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~---lg~~~~~~~~~~~ 169 (300)
T cd00897 94 -KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRI---LNHMVDNKAEYIM 169 (300)
T ss_pred -cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHH---HHHHHhcCCceEE
Confidence 56888887 7889999999999999999999999999999999999999999777679966 8999999999999
Q ss_pred EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcccc
Q 008919 157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN 235 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~ 235 (548)
++ ++|+.++|++|++|+ .||+ +++|||+|+|++... ..++.+ .|++ |||||||+|+||+++++. .
T Consensus 170 ev-v~Kt~~dek~G~l~~---~~g~----~~vvEyse~p~e~~~---~~~~~~--~~~~~nt~n~~~~l~~L~~~~~~-~ 235 (300)
T cd00897 170 EV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHVD---EFKSIK--KFKIFNTNNLWVNLKAVKRVVEE-N 235 (300)
T ss_pred EE-eecCCCCCcccEEEE---ECCE----EEEEEeccCCHHHHH---hhcCcc--cceEEEEeEEEEEHHHHHHHHHh-c
Confidence 96 778899999999997 6899 999999999998621 112334 7987 999999999999999864 3
Q ss_pred CCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcch
Q 008919 236 ERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSS 309 (548)
Q Consensus 236 ~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~ 309 (548)
...||+|++. |+|| ++ ++++|||++|+|++..|.+ +..++++|. +|+||||+.+-
T Consensus 236 ~~~lp~h~~~--K~v~---p~-----~~~~qlE~~i~da~~~~~~--------~~~~eV~R~-rF~PvKn~~dl 290 (300)
T cd00897 236 ALDLEIIVNP--KTVD---GG-----LNVIQLETAVGAAIKNFDN--------ALGVNVPRS-RFLPVKTTSDL 290 (300)
T ss_pred cCCCCeeecc--cccC---CC-----CCEEEeHhHhhhHHHhCCC--------cEEEEEChh-hcCCCCChHHH
Confidence 4569999977 6663 22 6899999999999888742 345678887 59999997433
No 9
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-58 Score=477.54 Aligned_cols=350 Identities=21% Similarity=0.267 Sum_probs=289.0
Q ss_pred CCC-CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 2 LPY-CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 2 Lpv-sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
++| +|.||||+.++||+.|++ +|+ +++||++|||+ +|+++|.+++++|.++ +-+|+.|.|+++|+++.
T Consensus 126 ieVR~g~tFLDL~V~QIe~LN~----~Y~--~dVPlvLMNSf--nTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~ 194 (498)
T KOG2638|consen 126 IEVRDGLTFLDLTVRQIENLNK----TYN--VDVPLVLMNSF--NTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDK 194 (498)
T ss_pred EEEcCCCchhHHHHHHHHHHHh----hcC--CCCCEEEeccc--ccchHHHHHHHHhcCC---ceeEEEeccccCCcccc
Confidence 456 699999999999999998 899 99999999999 8999999999998876 34799999999999996
Q ss_pred CCCeeeee----cCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 81 EDGQWLVM----RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 81 ~dg~~~l~----~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
++ .++.+ +...-+|+||||||+|.+|+.||+||+|+++|++|+||+|+||++|.+|..| +.+.+.++.++.|
T Consensus 195 et-lLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~I---Ln~~i~~~~ey~M 270 (498)
T KOG2638|consen 195 ET-LLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNI---LNHVINNNIEYLM 270 (498)
T ss_pred cc-ccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHH---HHHHhcCCCceEE
Confidence 64 44442 3456899999999999999999999999999999999999999999999988 5888999999999
Q ss_pred EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcccc
Q 008919 157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN 235 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~ 235 (548)
++ +.|+.++.|+|+|+. .+|+ ++++||+|+|++. .+++..+++|.. ||||+|++|.+++++++. .
T Consensus 271 Ev-TdKT~aDvKgGtLi~---y~G~----lrlLEiaQVP~eh-----v~eFkS~kkFkifNTNNlWinLkavKrlve~-~ 336 (498)
T KOG2638|consen 271 EV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEH-----VDEFKSIKKFKIFNTNNLWINLKAVKKLVEE-N 336 (498)
T ss_pred Ee-cccchhhcccceEEe---ecCE----EEEEEeccCChhH-----hhhhccceeEEEeccCCeEEehHHHHHHhhc-C
Confidence 96 778889999999997 8999 9999999999996 246777889998 999999999999999985 3
Q ss_pred CCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhhhc
Q 008919 236 ERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRK 315 (548)
Q Consensus 236 ~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k~~ 315 (548)
.-.++ .|.|+| ++|. ...++|||++++++++.|++ +....++++| |.|||++ ++.... +
T Consensus 337 ~l~me-Ii~N~k----ti~~-----~~~viQleTa~GaaIk~F~n------a~gv~VpRsR---FlPVKt~-sDLlLv-~ 395 (498)
T KOG2638|consen 337 ALNME-IIVNPK----TIDR-----GIEVIQLETAAGAAIKFFDN------AIGVNVPRSR---FLPVKTC-SDLLLV-M 395 (498)
T ss_pred cccce-eecChh----hccC-----CceEEEEhhhhhHHHHhCCC------ceeeeccccc---ccccccc-ccceee-e
Confidence 34454 556865 5653 24789999999999999975 3444566667 5899997 443211 1
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCccCCCccccCCCCeEEEeCCCccccHHHHhcccCC-CccCCCcEEE
Q 008919 316 RADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQ 394 (548)
Q Consensus 316 ~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~-~si~~~s~L~ 394 (548)
+ +.++ |..--.++. ..+.....| +|.|++. +.++++|..||++ ++|.++++|+
T Consensus 396 S-----------~Ly~--------ld~Gsl~l~----~~r~~~t~P--~vkLg~~-F~kv~~f~~rfp~iP~ileLdhLt 449 (498)
T KOG2638|consen 396 S-----------NLYD--------LDNGSLTLS----PSRFGPTPP--LVKLGSE-FKKVEDFLGRFPGIPDILELDHLT 449 (498)
T ss_pred c-----------ceee--------ccCCeEEec----hhhcCCCCC--eeecchh-hhHHHHHHhcCCCCCccceeceEE
Confidence 1 1111 111111121 112222234 7999999 8999999999999 8999999999
Q ss_pred EEeceEEEeceEEEEEEEEEecCCCCCceecCCCc
Q 008919 395 IEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGE 429 (548)
Q Consensus 395 veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~ 429 (548)
|.|+++|++||.|+|+|+|.|+. |..-..|+|.
T Consensus 450 VsGdV~FGknV~LkGtViIia~~--~~~i~IP~gs 482 (498)
T KOG2638|consen 450 VSGDVWFGKNVSLKGTVIIIANE--GDRIDIPDGS 482 (498)
T ss_pred EeccEEeccceEEeeEEEEEecC--CCeeecCCCC
Confidence 99999999999999999999998 8888899997
No 10
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=9.3e-60 Score=496.98 Aligned_cols=319 Identities=18% Similarity=0.210 Sum_probs=276.2
Q ss_pred CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEecCCCe
Q 008919 5 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQ 84 (548)
Q Consensus 5 sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~ 84 (548)
+|+||||+++|+|+++|++|.++.+.+..||||||||+ .|++.|++||+.|+||||.++||+||+|+++||++ .+|+
T Consensus 126 ~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~--~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk 202 (477)
T KOG2388|consen 126 SGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSA--FTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGK 202 (477)
T ss_pred cccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCC--CccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCc
Confidence 49999999999999999999988877799999999999 69999999999999999999999999999999999 6688
Q ss_pred eeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeEEEEeccC
Q 008919 85 WLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSS 163 (548)
Q Consensus 85 ~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~~~v~rK~ 163 (548)
++++.+.+++++|+|||++|.|+.++ |.+|.++|++|++||||||+|+++ ||++ +|+++.++++++.++ |+|.
T Consensus 203 ~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~f---iG~~it~~~d~~~k~-V~k~ 276 (477)
T KOG2388|consen 203 FILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVADPVF---IGFSITKEADVAAKV-VPKI 276 (477)
T ss_pred eeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEecceeeEecccce---eeEEeechhhHhhhh-cccc
Confidence 99999999999999999999999999 999999999999999999999998 9955 999999999999996 7888
Q ss_pred CCCccceEEEEEecCC-CceecceeEEEecccCccccCCCCCCC-CCcccccccceeeEEEeHHHHHhhhccccCCCccc
Q 008919 164 GATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRGPFSS-NGLQADFPANTNILYVDLASAELVGSSENERSLPG 241 (548)
Q Consensus 164 ~~~e~vGvL~~~~~~d-G~~~~~~~vVEYsel~~~~~~~~~~~~-g~l~s~f~~Ninnl~~~L~~l~~~l~~~~~~~lp~ 241 (548)
.+.|.+|++|. .+ |. +++|||||++++. +.....+ |.+ ..+++|||||+|+++||+++... ....||+
T Consensus 277 ~p~E~vG~~~~---~~~G~----~~vvEYsEi~~~~-a~~~~~d~g~l-~~~agnI~nh~ft~dFLkk~~~~-~~~~lp~ 346 (477)
T KOG2388|consen 277 NPGEVVGIVAL---KGQGT----PLVVEYSELDAEL-AKAKAPDGGRL-LFNAGNICNHFFTLDFLKKVTRA-SVPLLPY 346 (477)
T ss_pred CCCCceEEEEe---cCCCc----eeEEEecccCHHH-HhhcccccCcc-ccCCccHHHHHHhhHHHHHhhhc-ccccchh
Confidence 89999999998 44 77 9999999999996 5566666 444 33345999999999999999875 4556899
Q ss_pred cccccCCCceeecCCCCc---cccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhhhcccC
Q 008919 242 MVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRAD 318 (548)
Q Consensus 242 ~ian~KKkipy~D~~g~~---~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k~~~~~ 318 (548)
|+|. |||||+|.+|.. .-++++++|.|+ ||+|+- ..+++..+++|..+|||+||...+.
T Consensus 347 H~a~--kKip~~~~~g~~~kP~kpnGik~E~fi---fdvf~~-----~k~f~~meV~Re~efSPlKng~~~~-------- 408 (477)
T KOG2388|consen 347 HKAE--KKIPYVDSTGKLVKPTKPNGIKLEQFI---FDVFPS-----AKKFGLMEVPREEEFSPLKNGGKSS-------- 408 (477)
T ss_pred hhhh--ccccccccCCcccCCCCCCceeEEeee---eeeccc-----ccceeEEecchhhhcCccccCCCCC--------
Confidence 9999 999999986544 346789999877 555541 2567889999999999999986553
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHCCcccCCccCCCccccCCCCeEEEeC
Q 008919 319 MSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLH 368 (548)
Q Consensus 319 ~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~P~~~v~l~ 368 (548)
-+||+||+.++++.+..|+..+|+.+.+. ...++++|- |...
T Consensus 409 ---~D~p~T~~~~~l~~h~~wi~~~g~~f~~~---~~~~evs~~--vsy~ 450 (477)
T KOG2388|consen 409 ---TDNPSTARIALLRLHIRWIEKAGGIFSDA---EAVVEVSPL--VSYA 450 (477)
T ss_pred ---CCChhHHHHHHHHhhhhehhccCcEEecC---cceEEecce--eeec
Confidence 24999999999999999999999987653 234556663 5533
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-51 Score=432.70 Aligned_cols=302 Identities=21% Similarity=0.221 Sum_probs=235.2
Q ss_pred CCCCC-CCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYC-GRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvs-gksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|++|+ |+||||+++|||++++. +|+ ++|||+||||. |+++|.+||+.++|||++++||.||+|+.+||+.
T Consensus 127 l~~V~~gks~~dl~~~qIk~ln~----~~~--~~vP~~iMtS~---nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~ 197 (472)
T COG4284 127 LFEVKDGKSLFDLQAEQIKYLNR----QYN--VDVPLYIMTSL---NTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLL 197 (472)
T ss_pred eEEecCCCcHHHHHHHHHHHHHH----HhC--CCCCEEEEecC---CcHHHHHHHhhhhhcCCCHHHeEEEecCCcceee
Confidence 46775 99999999999999999 778 99999999996 9999999999999999999999999999999665
Q ss_pred cCCCeeeeecCCC-CccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 80 AEDGQWLVMRPFA-PVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 80 ~~dg~~~l~~~~~-l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
.++|++++.+.++ ++|.|+||||+|.+|+.||++++|.++|++|++|+||||+++.+||.| +|+++..+.++.+++
T Consensus 198 ~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~~---lg~~~~~~~e~~~e~ 274 (472)
T COG4284 198 SDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLKF---LGFMAETNYEYLMET 274 (472)
T ss_pred cccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHHH---HHHHHhcCcceeEEE
Confidence 5889999976666 999999999999999999999999999999999999999555569976 899999999999997
Q ss_pred EeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccc-eeeEEEeHHHHHhhhccccCC
Q 008919 159 CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPAN-TNILYVDLASAELVGSSENER 237 (548)
Q Consensus 159 v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~N-innl~~~L~~l~~~l~~~~~~ 237 (548)
++|+.|+|+||+|+. .||+ ++++||||+|++. .++-..++.. ..|.+| |.+|++++++|.+.. ..
T Consensus 275 -t~Kt~a~ekvG~Lv~---~~g~----~rllEysev~~~~-~~~~~s~~~~-~~~n~Nni~l~~~~~~~l~~~~----~l 340 (472)
T COG4284 275 -TDKTKADEKVGILVT---YDGK----LRLLEYSEVPNEH-REEFTSDGKL-KYFNTNNIWLHLFSVKFLKEAA----YL 340 (472)
T ss_pred -eecccccccceEEEE---eCCc----eEEEEEecCChhH-hhhhccccce-eeeccccceeehhHHHHHHhhh----cc
Confidence 788889999999997 7999 9999999999985 2222233322 122232 555555555555543 45
Q ss_pred CccccccccCCCceeecC--C-CCccccCceeecc-cchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhh
Q 008919 238 SLPGMVLNTKKPIVYMDN--F-GDTHSVPGGRLEC-TMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKK 313 (548)
Q Consensus 238 ~lp~~ian~KKkipy~D~--~-g~~~~~~~~rLE~-~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k 313 (548)
.||+|.+. ||||+.|. . .+...++..++|. |+- +|+|.- . +....++..+||+.+|+|+||-.+..
T Consensus 341 ~Lpi~~a~--Kki~~~~~~~~~~t~i~~~i~kfe~~FI~--fDlF~~--~-s~~~~~~~~vpR~~~f~Plkn~~~~~--- 410 (472)
T COG4284 341 NLPIHKAI--KKIPQLDNIIQLTTAIGKNISKFENEFIP--FDLFLY--K-SDENGGLLLVPRFGEFSPLKNLEGSH--- 410 (472)
T ss_pred CCcchhhh--cccCccccceeeccccccchhhccccccc--eeeeEE--E-ecCCCceEeccccCCCCchhhccCCC---
Confidence 79999988 99999981 1 1122456788884 651 455531 1 11445677899999999999986552
Q ss_pred hcccCCCCCCChhhhHHHHHHHHHHHHHHCCccc
Q 008919 314 RKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 347 (548)
Q Consensus 314 ~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v 347 (548)
-.+++++..++-+... |++..+..+
T Consensus 411 --------~~~~~~~~~~~~~~~~-~~e~~~~~i 435 (472)
T COG4284 411 --------FDNVETFTCGIPRIPL-ILELEGLTI 435 (472)
T ss_pred --------CCcHHhhhcccccccc-hhhhcccee
Confidence 1156666555544433 555444443
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=5e-50 Score=406.44 Aligned_cols=211 Identities=18% Similarity=0.168 Sum_probs=183.0
Q ss_pred CCCCC---CCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeE
Q 008919 1 MLPYC---GRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPA 77 (548)
Q Consensus 1 ~Lpvs---gksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~ 77 (548)
|+|+. |+||||++++||++++.++. .+ +.|||+||||+ +||+.|++||++|+ +++++|++|+|+++||
T Consensus 22 ~~~i~~~~gk~~l~~~~~~i~~~~~~~~--~~--~~Ip~~imts~--~t~~~t~~~l~~~~---~~~~~v~~f~Q~~~P~ 92 (266)
T cd04180 22 STDVGLPSGQCFLQLIGEKILTLQEIDL--YS--CKIPEQLMNSK--YTHEKTQCYFEKIN---QKNSYVITFMQGKLPL 92 (266)
T ss_pred eeeecCCCCCcHHHHHHHHHHHHHHHhh--cC--CCCCEEEEcCc--hhHHHHHHHHHHcC---CCCCceEEEEeCCceE
Confidence 56776 99999999999999999653 25 78999999999 79999999999998 5678999999999999
Q ss_pred EecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeE
Q 008919 78 VDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 78 l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~ 156 (548)
+++ +|...++++++++|+|+||||||++|+.+|+|++|+++|++|++|+|+||+|+++ ||.+ +|+++..+.++.+
T Consensus 93 ~~~-~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~---lG~~~~~~~~~~~ 168 (266)
T cd04180 93 KND-DDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF---IGIAIQNRKAINQ 168 (266)
T ss_pred EeC-CCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH---HHHHHHcCCCEEE
Confidence 995 5777788888999999999999999999999999999999999999999999999 9976 8999999999999
Q ss_pred EEEeccCCCCccceEEEEEecCC-CceecceeEEEecccCccccCCC----CCCCCCcccccccceeeEEEeHHHHHhhh
Q 008919 157 ASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRG----PFSSNGLQADFPANTNILYVDLASAELVG 231 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~d-G~~~~~~~vVEYsel~~~~~~~~----~~~~g~l~s~f~~Ninnl~~~L~~l~~~l 231 (548)
++ ++|+.++|++|++|. .+ |+ +++|||+|+|++..... +.++.+.++.+++|||||||+|+||++++
T Consensus 169 kv-v~K~~~d~k~G~~~~---~~~g~----~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~l~~~~ 240 (266)
T cd04180 169 KV-VPKTRNEESGGYRIA---NINGR----VQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLVEFKDRV 240 (266)
T ss_pred EE-EECCCCCCeEEEEEE---ecCCC----EEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHHHHHHHH
Confidence 97 566689999999997 45 88 99999999999853221 11222224455669999999999999987
Q ss_pred c
Q 008919 232 S 232 (548)
Q Consensus 232 ~ 232 (548)
+
T Consensus 241 ~ 241 (266)
T cd04180 241 D 241 (266)
T ss_pred H
Confidence 3
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=93.20 E-value=16 Score=40.27 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=107.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEecC
Q 008919 2 LPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAE 81 (548)
Q Consensus 2 Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~ 81 (548)
=|+.||+.++..++.+..+.- ..+ ++..+. -.+..++.+.+.. ++.|+.|..
T Consensus 25 H~vaGkpMl~hVi~~a~~l~~---------~~i--~vVvGh---~ae~V~~~~~~~~-------~v~~v~Q~e------- 76 (460)
T COG1207 25 HPVAGKPMLEHVIDAARALGP---------DDI--VVVVGH---GAEQVREALAERD-------DVEFVLQEE------- 76 (460)
T ss_pred hhccCccHHHHHHHHHhhcCc---------ceE--EEEEcC---CHHHHHHHhcccc-------CceEEEecc-------
Confidence 378999999999888876643 222 333443 5677887777533 567788764
Q ss_pred CCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCce-EEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 82 DGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK-GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 82 dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gik-yi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
|-|-|.--.+. ++ .+..+++ .+.|.+-|=+|...+. +-.++......+......+ .
T Consensus 77 ---------------qlGTgHAV~~a-----~~-~l~~~~~g~vLVl~GD~PLit~~T-L~~L~~~~~~~~~~~tvLt-~ 133 (460)
T COG1207 77 ---------------QLGTGHAVLQA-----LP-ALADDYDGDVLVLYGDVPLITAET-LEELLAAHPAHGAAATVLT-A 133 (460)
T ss_pred ---------------cCChHHHHHhh-----hh-hhhcCCCCcEEEEeCCcccCCHHH-HHHHHHhhhhcCCceEEEE-E
Confidence 12222222111 22 2345555 8899999999998643 3246777777778887776 4
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccc-cceeeEEEeHHHHHhhhcc
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFP-ANTNILYVDLASAELVGSS 233 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~-~Ninnl~~~L~~l~~~l~~ 233 (548)
.-+.|. |-|.+++ +.+|+ ...+||.-+.+++.. .-. .|+..+.|+-..|.+.|.+
T Consensus 134 ~~~dP~-GYGRIvr--~~~g~---V~~IVE~KDA~~eek------------~I~eiNtGiy~f~~~~L~~~L~~ 189 (460)
T COG1207 134 ELDDPT-GYGRIVR--DGNGE---VTAIVEEKDASEEEK------------QIKEINTGIYAFDGAALLRALPK 189 (460)
T ss_pred EcCCCC-CcceEEE--cCCCc---EEEEEEcCCCCHHHh------------cCcEEeeeEEEEcHHHHHHHHHH
Confidence 444444 7788886 25666 377999888877741 222 3999999999999998864
No 14
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=88.97 E-value=17 Score=38.66 Aligned_cols=173 Identities=9% Similarity=0.063 Sum_probs=95.0
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCc--eEEEecCceeE
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSS--FQLFEQPLVPA 77 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~q--V~~F~Q~~vP~ 77 (548)
|||+.|+ +++|++++++.. .| +. -++|.|.. ..+..+++|.+...|+++..+ +.+ .| |.
T Consensus 28 llpv~gk~pli~~~l~~l~~--------~G--i~-~i~iv~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i-~~---~~ 89 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCAN--------SG--ID-TVGVLTQY---QPLELNNHIGIGSPWDLDRINGGVTI-LP---PY 89 (380)
T ss_pred eeeeCCceeehhHHHHHHHh--------CC--CC-EEEEEecC---CHHHHHHHHhCCCcccccCCCCCEEE-eC---Cc
Confidence 7899999 799999988763 35 22 57888876 788899999876667764221 111 11 00
Q ss_pred EecCCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 78 VDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 78 l~~~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
.. . .-.-.|-|.|+ ++.++. .+....-+++.|.+.|++ ...| +..++-.+...++++.+
T Consensus 90 ~~-~----------~~~~~~~Gta~al~~a~~------~l~~~~~~~~lV~~gD~l-~~~d--~~~ll~~h~~~~~~~tl 149 (380)
T PRK05293 90 SE-S----------EGGKWYKGTAHAIYQNID------YIDQYDPEYVLILSGDHI-YKMD--YDKMLDYHKEKEADVTI 149 (380)
T ss_pred cc-C----------CCCcccCCcHHHHHHHHH------HHHhCCCCEEEEecCCEE-EcCC--HHHHHHHHHhcCCCEEE
Confidence 00 0 00011346544 333332 232222367889999984 3343 33445555566666544
Q ss_pred EEEeccC-CCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 157 ASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 157 ~~v~rK~-~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+ .+.+ ....+-|++.. ..+|+ +.++.|=|... . ....|+..+.|+-+.+.+.+.
T Consensus 150 ~~-~~~~~~~~~~yG~v~~--d~~g~------V~~~~eKp~~~-------~-----~~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 150 AV-IEVPWEEASRFGIMNT--DENMR------IVEFEEKPKNP-------K-----SNLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred EE-EEcchhhccccCEEEE--CCCCc------EEEEEeCCCCC-------C-----cceeeeEEEEEcHHHHHHHHH
Confidence 43 2221 12335677754 13444 34444433211 0 112499999999888877654
No 15
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=87.05 E-value=10 Score=40.10 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=91.3
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchH-HHHHHHHHcCCCCCCCCceEEEecCceeEE
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE-RITSLCERLRWFGRGQSSFQLFEQPLVPAV 78 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~-~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l 78 (548)
||||.|| ++++.+++.+.+. | + --++|.++. -++ ..+++|.+...||++..+ ..+..+
T Consensus 27 LlpV~gk~PlIe~~l~~L~~~--------G--i-~~I~iv~~~---~~~~~I~~~l~~~~~~~~~~~~------~~~~~~ 86 (369)
T TIGR02092 27 SLPFGGRYRLIDFPLSNMVNA--------G--I-RNVFIFFKN---KERQSLFDHLGSGREWDLHRKR------DGLFVF 86 (369)
T ss_pred ccccCCeeeEEEEEhhhhhcc--------C--C-CEEEEEeCC---CcHHHHHHHHhCCCCCCccccc------CcEEEE
Confidence 7999999 8999999888742 4 2 257778877 444 899999876667764221 111111
Q ss_pred ecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 79 DAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 79 ~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
. ... ..|-|-|+.+...+. ++.+...+-+.+.+.+.|+ +...| +..++-.+.+.++++.+.+
T Consensus 87 ~-------~~e-----~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnGD~-l~~~d--l~~ll~~h~~~~a~~tl~~ 148 (369)
T TIGR02092 87 P-------YND-----RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNSHM-VCNID--LKAVLKYHEETGKDITVVY 148 (369)
T ss_pred e-------ccC-----CCCcccChHHHHHHH---HHHHHhCCCCEEEEECCCE-EEecC--HHHHHHHHHHcCCCEEEEE
Confidence 0 000 122333444433322 1222222336889999998 44443 3345666666677765543
Q ss_pred EeccC--CCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 159 CKRSS--GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 159 v~rK~--~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+.. .+..-++++.. ..+|+ +. ++.+-++. +. ..-.|+..++|+-+.+.+.++
T Consensus 149 -~~v~~~~~~~~g~vv~~--~~~g~----v~--~~~~~~~~--------~~----~~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 149 -KKVKPADASEYDTILRF--DESGK----VK--SIGQNLNP--------EE----EENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred -EecCHHHccccCcEEEE--cCCCC----EE--eccccCCC--------CC----cceeeeeEEEEEHHHHHHHHH
Confidence 2322 12223455543 13344 32 22111111 00 111388899999887766654
No 16
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=85.53 E-value=31 Score=32.89 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=87.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++.+... | --.++|.|.. ..+.+.+++.+...+|+ .+.+..|
T Consensus 23 ll~v~g~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~i~~~~~~~~~~~~---~i~~~~~-------- 77 (217)
T cd04181 23 LLPIAGKPILEYIIERLARA--------G---IDEIILVVGY---LGEQIEEYFGDGSKFGV---NIEYVVQ-------- 77 (217)
T ss_pred ccEECCeeHHHHHHHHHHHC--------C---CCEEEEEecc---CHHHHHHHHcChhhcCc---eEEEEeC--------
Confidence 68999999999999887642 2 1246777776 45677777776443342 2222111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
..|.|.++-..+.. +.+ .-+++.|.+.|++. ..| +..++..+...+.++.+.+ .
T Consensus 78 --------------~~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~~-~~~--~~~~~~~~~~~~~~~~~~~-~ 131 (217)
T cd04181 78 --------------EEPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVLT-DLD--LSELLRFHREKGADATIAV-K 131 (217)
T ss_pred --------------CCCCccHHHHHHhh-----hhc---CCCCEEEEECCeec-CcC--HHHHHHHHHhcCCCEEEEE-E
Confidence 12345544332221 222 35788999999853 333 3344555666677766654 3
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHH
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASA 227 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l 227 (548)
+.. ....-|.+.. ..+|+ ++++.|=|... . ....|++.++|+-+.+
T Consensus 132 ~~~-~~~~~~~v~~--d~~~~------v~~~~ek~~~~-------~-----~~~~~~Giy~~~~~~~ 177 (217)
T cd04181 132 EVE-DPSRYGVVEL--DDDGR------VTRFVEKPTLP-------E-----SNLANAGIYIFEPEIL 177 (217)
T ss_pred EcC-CCCcceEEEE--cCCCc------EEEEEECCCCC-------C-----CCEEEEEEEEECHHHH
Confidence 332 3445566643 13344 44555433321 0 1234999999998776
No 17
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=83.88 E-value=41 Score=32.11 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=85.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.. .| .. .++|.|+. ..+.+.+++.+...+|. .+.+ ..
T Consensus 23 ll~i~g~pli~~~l~~l~~--------~g--~~-~v~vv~~~---~~~~i~~~~~~~~~~~~---~~~~--------~~- 76 (223)
T cd06915 23 LAPVAGRPFLEYLLEYLAR--------QG--IS-RIVLSVGY---LAEQIEEYFGDGYRGGI---RIYY--------VI- 76 (223)
T ss_pred ccEECCcchHHHHHHHHHH--------CC--CC-EEEEEccc---CHHHHHHHHcCccccCc---eEEE--------EE-
Confidence 6899999999999888763 23 22 46777775 56778888875332222 1111 11
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
+ ..+-|.++ ++.++. .+ +-+++.+.+.|++. ..| +..++-.+...+.++.+.+
T Consensus 77 ~-------------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D~~~-~~~--~~~~l~~~~~~~~~~~~~~- 130 (223)
T cd06915 77 E-------------PEPLGTGGAIKNALP------KL---PEDQFLVLNGDTYF-DVD--LLALLAALRASGADATMAL- 130 (223)
T ss_pred C-------------CCCCcchHHHHHHHh------hc---CCCCEEEEECCccc-CCC--HHHHHHHHHhCCCcEEEEE-
Confidence 0 12345543 444442 22 23678889999865 232 3344544555566666554
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhh
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
.+.... ..-|.+.. ..+|+ ++++.+=+... . .+-.|++..+|+-++++.+
T Consensus 131 ~~~~~~-~~~~~v~~--d~~~~------v~~~~ek~~~~---------~---~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 131 RRVPDA-SRYGNVTV--DGDGR------VIAFVEKGPGA---------A---PGLINGGVYLLRKEILAEI 180 (223)
T ss_pred EECCCC-CcceeEEE--CCCCe------EEEEEeCCCCC---------C---CCcEEEEEEEECHHHHhhC
Confidence 333222 23444432 13444 34454422210 0 1224999999999988764
No 18
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=81.54 E-value=12 Score=41.36 Aligned_cols=71 Identities=10% Similarity=0.175 Sum_probs=55.7
Q ss_pred ceeceEEEeeeEEeeCc---EeeeeCCCccccccceeeeEEEEEEeccceeEeeceeEecCeEEEecCC----eEEEEee
Q 008919 436 YRCGRCKLNNVKVLNKG---IDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDG----HKLKITS 508 (548)
Q Consensus 436 ~~~~~~~~~~~~V~N~G---~~~~~~~~~~w~~~~~r~e~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g----~~~~~~~ 508 (548)
..|-+++|+|.+++|-| +..+.++...-.+.+.-.....|++ |+++++.++||++....|+ +|+.+-+
T Consensus 141 ~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~l-----w~S~g~~V~~N~I~g~RD~gi~i~r~~~~~ 215 (455)
T TIGR03808 141 QGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVS-----FDALGLIVARNTIIGANDNGIEILRSAIGD 215 (455)
T ss_pred ccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEE-----eccCCCEEECCEEEccCCCCeEEEEeeecC
Confidence 66778999999999885 5566566667777777777777654 8999999999999999998 6665555
Q ss_pred CCC
Q 008919 509 GNS 511 (548)
Q Consensus 509 ~~~ 511 (548)
|+.
T Consensus 216 dg~ 218 (455)
T TIGR03808 216 DGT 218 (455)
T ss_pred Ccc
Confidence 544
No 19
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=79.78 E-value=73 Score=34.82 Aligned_cols=190 Identities=12% Similarity=0.057 Sum_probs=96.5
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.|+ +++++.++++.. .| + -.++|.|+. ..+..+++|.+..+|+.. ..+.+..+.
T Consensus 28 Llpi~gk~plI~~~L~~l~~--------~G--i-~~vivv~~~---~~~~i~~~l~~~~~~~~~-------~~g~~~i~~ 86 (429)
T PRK02862 28 AVPLAGKYRLIDIPISNCIN--------SG--I-NKIYVLTQF---NSASLNRHISQTYNFDGF-------SGGFVEVLA 86 (429)
T ss_pred eeEECCeeEEeHHHHHHHHH--------CC--C-CEEEEEecC---CHHHHHHHHhcCcCcccc-------CCCEEEEeC
Confidence 7899999 999999887754 34 2 257888887 778899999864323210 011111111
Q ss_pred cCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.. ....-...+-|-|+-..... +.+....-+++.|.+.|++. ..|.. .++-.+.+.++++.+.+
T Consensus 87 ~~-------~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD~l~-~~dl~--~ll~~h~~~~a~~tl~~- 150 (429)
T PRK02862 87 AQ-------QTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGDQLY-RMDYR--LFVQHHRETGADITLAV- 150 (429)
T ss_pred Cc-------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCEEE-eCCHH--HHHHHHHHcCCCEEEEE-
Confidence 00 00000011246666443322 23333334688999999843 44433 44666666677765554
Q ss_pred eccCCC-CccceEEEEEecCCCceecceeEEEecccCccc-c--C----CCCCCCCCcccccccceeeEEEeHHHHHhhh
Q 008919 160 KRSSGA-TEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG-I--T----RGPFSSNGLQADFPANTNILYVDLASAELVG 231 (548)
Q Consensus 160 ~rK~~~-~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~-~--~----~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l 231 (548)
.+...+ ...-|++.. ..+|+ ....+|..+-+... . + .....+-+. ..+-.|+..+.|+-+.|.+.+
T Consensus 151 ~~~~~~~~~~yG~i~~--d~~g~---V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~n~Giyi~~~~vl~~~l 224 (429)
T PRK02862 151 LPVDEKDASGFGLMKT--DDDGR---ITEFSEKPKGDELKAMAVDTSRLGLSPEEAKG-KPYLASMGIYVFSRDVLFDLL 224 (429)
T ss_pred EecChhhcccceEEEE--CCCCc---EEEEEECCCccccchhcccccccccccccCCC-CceEEEEEEEEEcHHHHHHHH
Confidence 222211 224677754 13454 13344443211100 0 0 000000000 012249999999999998776
Q ss_pred cc
Q 008919 232 SS 233 (548)
Q Consensus 232 ~~ 233 (548)
..
T Consensus 225 ~~ 226 (429)
T PRK02862 225 NK 226 (429)
T ss_pred HH
Confidence 53
No 20
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=79.25 E-value=45 Score=32.48 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++.+.+ .| . --++|.|.. ..+.+.++|++..++++... ...+..+.
T Consensus 25 llpi~g~piI~~~l~~l~~--------~G--i-~~I~iv~~~---~~~~i~~~l~~~~~~~~~~~------~~~i~~~~- 83 (217)
T cd04197 25 LLPLANVPLIDYTLEFLAL--------NG--V-EEVFVFCCS---HSDQIKEYIEKSKWSKPKSS------LMIVIIIM- 83 (217)
T ss_pred eeEECCEehHHHHHHHHHH--------CC--C-CeEEEEeCC---CHHHHHHHHhhccccccccC------cceEEEEe-
Confidence 7999999999998888764 24 2 146778876 67889999998766654311 01111111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhc-----CCcee
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH-----GKKLG 155 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~-----~~~~~ 155 (548)
. ..+.|-|+..+.+...+.+ -+...+.+.|++. ..|.. .++.++... ++.+.
T Consensus 84 ~-------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~-~~dl~--~~l~~h~~~~~~~~~a~~t 140 (217)
T cd04197 84 S-------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS-NIDLK--EILEEHKERRKKDKNAIMT 140 (217)
T ss_pred C-------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeee-ccCHH--HHHHHHHHhhccccCceEE
Confidence 1 1134456666665544332 2456688888754 34432 446666653 55555
Q ss_pred EE
Q 008919 156 FA 157 (548)
Q Consensus 156 ~~ 157 (548)
+.
T Consensus 141 ~~ 142 (217)
T cd04197 141 MV 142 (217)
T ss_pred EE
Confidence 44
No 21
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=78.84 E-value=74 Score=31.77 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=87.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcC-CCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLR-WFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~-~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.|+++++..++.+..+ .| +. -++|.+.. ..+...++|.+.. .+|+ .|.+..|
T Consensus 25 llpv~g~plI~~~l~~l~~~-------~g--i~-~i~iv~~~---~~~~i~~~l~~~~~~~~~---~i~~~~~------- 81 (257)
T cd06428 25 LFPVAGKPMIHHHIEACAKV-------PD--LK-EVLLIGFY---PESVFSDFISDAQQEFNV---PIRYLQE------- 81 (257)
T ss_pred cCeECCeeHHHHHHHHHHhc-------CC--Cc-EEEEEecC---CHHHHHHHHHhcccccCc---eEEEecC-------
Confidence 78999999999988877642 23 21 34566665 6778888887532 2332 1221111
Q ss_pred cCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
..|-|-|+-.... .+.+....-++++|.+.|++ ...|. -.++.++.+.++++.+.+
T Consensus 82 ---------------~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~gD~~-~~~dl--~~~~~~h~~~~~~~tl~~- 137 (257)
T cd06428 82 ---------------YKPLGTAGGLYHF-----RDQILAGNPSAFFVLNADVC-CDFPL--QELLEFHKKHGASGTILG- 137 (257)
T ss_pred ---------------CccCCcHHHHHHH-----HHHhhccCCCCEEEEcCCee-cCCCH--HHHHHHHHHcCCCEEEEE-
Confidence 1233444432222 12222222468899999987 33443 244666767777766554
Q ss_pred eccC-CCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhh
Q 008919 160 KRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 160 ~rK~-~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
.+.. .....-|++... ..+|+ +.++.|=|... . ....|+..++|+-+.+..+
T Consensus 138 ~~~~~~~~~~yg~v~~d-~~~g~------v~~~~Ekp~~~-----------~-~~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 138 TEASREQASNYGCIVED-PSTGE------VLHYVEKPETF-----------V-SDLINCGVYLFSPEIFDTI 190 (257)
T ss_pred EEccccccccccEEEEe-CCCCe------EEEEEeCCCCc-----------c-cceEEEEEEEECHHHHHHH
Confidence 2221 112234666431 02344 33444323211 1 1125999999998877543
No 22
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=78.04 E-value=63 Score=31.48 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=35.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCC
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGR 62 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl 62 (548)
|+|+.|+++++..++.+.. .| . -.++|.|+. ..+...+++++...+++
T Consensus 25 l~~i~g~~li~~~l~~l~~--------~~--~-~~i~vv~~~---~~~~~~~~~~~~~~~~~ 72 (236)
T cd04189 25 LIPVAGKPIIQYAIEDLRE--------AG--I-EDIGIVVGP---TGEEIKEALGDGSRFGV 72 (236)
T ss_pred eeEECCcchHHHHHHHHHH--------CC--C-CEEEEEcCC---CHHHHHHHhcchhhcCC
Confidence 6899999999998888753 23 2 156788887 67888888887555554
No 23
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=78.02 E-value=62 Score=34.80 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=86.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++++. . -..+|+++. ..+...+++.+. ++ ++.+..|.
T Consensus 24 Llpi~gkPli~~~i~~l~~~--------~----~~i~Ivv~~---~~~~i~~~~~~~--~~----~v~~~~~~------- 75 (430)
T PRK14359 24 LHTICGKPMLFYILKEAFAI--------S----DDVHVVLHH---QKERIKEAVLEY--FP----GVIFHTQD------- 75 (430)
T ss_pred eCEECCccHHHHHHHHHHHc--------C----CcEEEEECC---CHHHHHHHHHhc--CC----ceEEEEec-------
Confidence 68999999999999988652 1 246777876 577788888753 11 34443331
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
...+.|.|+....+ ...-+++++.+.|+++... .. +-.....+.++.+.+ .
T Consensus 76 -------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~~~~--~~---l~~l~~~~~~~~v~~-~ 126 (430)
T PRK14359 76 -------------LENYPGTGGALMGI----------EPKHERVLILNGDMPLVEK--DE---LEKLLENDADIVMSV-F 126 (430)
T ss_pred -------------CccCCCcHHHHhhc----------ccCCCeEEEEECCccCCCH--HH---HHHHHhCCCCEEEEE-E
Confidence 12233555433321 1124789999999987432 22 223334455554443 3
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+...+. .-|++.. .+|+ ...++|....+.+ .. ..+-.|+..++|+-+++++.+.
T Consensus 127 ~~~~~~-~~g~v~~---d~g~---v~~i~e~~~~~~~----------~~-~~~~~~~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 127 HLADPK-GYGRVVI---ENGQ---VKKIVEQKDANEE----------EL-KIKSVNAGVYLFDRKLLEEYLP 180 (430)
T ss_pred EcCCCc-cCcEEEE---cCCe---EEEEEECCCCCcc----------cc-cceEEEeEEEEEEHHHHHHHHH
Confidence 332232 3455543 3565 1234443322111 01 0122499999999999987654
No 24
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=77.08 E-value=37 Score=33.28 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=95.5
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.|+ ++++..++++... | ..=.++|.+.. ..+...+++++...+++ +|.+..|+.
T Consensus 24 ll~i~g~~pli~~~l~~l~~~--------g--~~~ii~V~~~~---~~~~i~~~~~~~~~~~~---~i~~i~~~~----- 82 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLANA--------G--IKEIIVVVNGY---KEEQIEEHLGSGYKFGV---KIEYIVQPE----- 82 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHHT--------T--CSEEEEEEETT---THHHHHHHHTTSGGGTE---EEEEEEESS-----
T ss_pred cceecCCCcchhhhhhhhccc--------C--CceEEEEEeec---ccccccccccccccccc---cceeeeccc-----
Confidence 6899999 9999999888752 4 33346666655 66788899988665552 233322221
Q ss_pred cCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCC-ceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG-RKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~G-ikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
|.|-|+-...+ .+.+.... -+++.|.+.|++.-. | +..++-.+...+.++.+.+
T Consensus 83 -----------------~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD~i~~~-~--~~~~l~~~~~~~~~~~~~~ 137 (248)
T PF00483_consen 83 -----------------PLGTAGALLQA-----LDFIEEEDDDEDFLVLNGDIIFDD-D--LQDMLEFHRESNADGTVTL 137 (248)
T ss_dssp -----------------SSCHHHHHHHT-----HHHHTTSEE-SEEEEETTEEEEST-T--HHHHHHHHHHHSSCESEEE
T ss_pred -----------------ccchhHHHHHH-----HHHhhhccccceEEEEeccccccc-h--hhhHHHhhhcccccccccc
Confidence 11555433332 22332222 357999999985543 3 3355777777777553333
Q ss_pred EeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccc-cceeeEEEeHHHHHhhhc
Q 008919 159 CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFP-ANTNILYVDLASAELVGS 232 (548)
Q Consensus 159 v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~-~Ninnl~~~L~~l~~~l~ 232 (548)
.........+-|++.. ..+|+ +++.-|=|... . .-. .|+...+|+-+.+..+++
T Consensus 138 ~~~~~~~~~~~g~v~~--d~~~~------V~~~~EKP~~~---------~---~~~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 138 LVVPVEDPSRYGVVEV--DEDGR------VIRIVEKPDNP---------N---ASNLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp EEEESSGGGGSEEEEE--ETTSE------EEEEEESCSSH---------S---HSSEEEEEEEEEETHHHHHHHH
T ss_pred ccccccccccceeeee--cccee------EEEEeccCccc---------c---cceeccCceEEEcchHHHHHhh
Confidence 2222233445666654 24454 44444434331 0 012 499999999998887753
No 25
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=76.15 E-value=69 Score=33.67 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=84.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++.+.. .| . -.++|+|+. ...+...++|.+...|++ ++.+..|.
T Consensus 24 l~pv~g~pli~~~l~~l~~--------~g--i-~~i~vv~~~--~~~~~i~~~~~~~~~~~~---~~~~~~~~------- 80 (353)
T TIGR01208 24 LIPVANKPILQYAIEDLAE--------AG--I-TDIGIVVGP--VTGEEIKEIVGEGERFGA---KITYIVQG------- 80 (353)
T ss_pred ccEECCEeHHHHHHHHHHH--------CC--C-CEEEEEeCC--CCHHHHHHHHhcccccCc---eEEEEECC-------
Confidence 6899999999998887753 23 1 257888887 367888888877555554 23222221
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
.|.|-++-..+.. +.+. . +-+.+.+.|+++ .. .+-.++-.+...+++..+.+ .
T Consensus 81 ---------------~~~G~~~al~~a~-----~~l~-~--~~~li~~gD~~~-~~--~l~~l~~~~~~~~~d~ti~~-~ 133 (353)
T TIGR01208 81 ---------------EPLGLAHAVYTAR-----DFLG-D--DDFVVYLGDNLI-QD--GISRFVKSFEEKDYDALILL-T 133 (353)
T ss_pred ---------------CCCCHHHHHHHHH-----HhcC-C--CCEEEEECCeec-Cc--cHHHHHHHHHhcCCCcEEEE-E
Confidence 2445554333222 1221 1 235566778865 33 23344566666677766554 3
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHH
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAE 228 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~ 228 (548)
+...+ ..-|++.. .++. .++++.+-|... . + . ..|+..++|+-.+++
T Consensus 134 ~~~~~-~~~g~~~~---~~~~-----~v~~~~ekp~~~-------~-~---~-~~~~Giy~~~~~l~~ 180 (353)
T TIGR01208 134 KVRDP-TAFGVAVL---EDGK-----RILKLVEKPKEP-------P-S---N-LAVVGLYMFRPLIFE 180 (353)
T ss_pred ECCCh-hhCeEEEE---cCCC-----cEEEEEECCCCC-------C-c---c-ceEEEEEEECHHHHH
Confidence 33333 23456543 3332 233333333221 0 0 1 138999999974443
No 26
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=75.31 E-value=1e+02 Score=32.05 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=86.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
||||.||+++++.++.+.. .| .+ -++|.+.. .-.+..+++|.+...||+ ++.+..|.
T Consensus 28 Llpv~gkPmI~~~l~~l~~--------aG--i~-~I~ii~~~--~~~~~~~~~l~~g~~~g~---~i~y~~q~------- 84 (292)
T PRK15480 28 LLPIYDKPMIYYPLSTLML--------AG--IR-DILIISTP--QDTPRFQQLLGDGSQWGL---NLQYKVQP------- 84 (292)
T ss_pred EeEECCEEHHHHHHHHHHH--------CC--CC-EEEEEecC--CchHHHHHHHcCccccCc---eeEEEECC-------
Confidence 6899999999998888763 34 22 35555555 244567788876666776 33333332
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
.|.|-|+-+.... ++.. +-+ ..+...||++...|- -.++-.+...+.++.+.+ .
T Consensus 85 ---------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~gD~i~~~~~l--~~ll~~~~~~~~~~tv~~-~ 138 (292)
T PRK15480 85 ---------------SPDGLAQAFIIGE------EFIG-GDD-CALVLGDNIFYGHDL--PKLMEAAVNKESGATVFA-Y 138 (292)
T ss_pred ---------------CCCCHHHHHHHHH------HHhC-CCC-EEEEECCeeeeccCH--HHHHHHHHhCCCCeEEEE-E
Confidence 2566666544322 2222 223 455678998765543 244555555555555443 2
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHh
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAEL 229 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~ 229 (548)
+...+ +.-|++.. ..+|+ + ++..|=|... .|. -+|+..++|+-+.++.
T Consensus 139 ~v~~p-~~yGvv~~--d~~g~----v--~~i~EKP~~p-----------~s~-~a~~GiY~~~~~v~~~ 186 (292)
T PRK15480 139 HVNDP-ERYGVVEF--DQNGT----A--ISLEEKPLQP-----------KSN-YAVTGLYFYDNDVVEM 186 (292)
T ss_pred EcCCc-ccCcEEEE--CCCCc----E--EEEEECCCCC-----------CCC-EEEEEEEEEChHHHHH
Confidence 33222 35677754 13454 3 3333323210 111 2599999999765543
No 27
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=75.22 E-value=97 Score=33.93 Aligned_cols=193 Identities=13% Similarity=0.105 Sum_probs=101.9
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.|+ .+++++++.+.. .| .. -++|.++. ..+...++|++..+|+.... +.++.+..+.
T Consensus 28 llpv~g~~plId~~L~~l~~--------~G--i~-~i~iv~~~---~~~~i~~~l~~~~~~~~~~~----~~~~~~~i~~ 89 (436)
T PLN02241 28 AVPIGGNYRLIDIPMSNCIN--------SG--IN-KIYVLTQF---NSASLNRHLSRAYNFGNGGN----FGDGFVEVLA 89 (436)
T ss_pred ceEeCCcceEehHHHHHHHh--------CC--CC-EEEEEecc---CHHHHHHHHhccCCCCCCcc----cCCCCEEEcC
Confidence 7899986 999998888753 34 21 35777876 77889999985433543210 1222211111
Q ss_pred cCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.. ... .-...|-|.||-...... .+++...++-+++.+.+-|++ ...|. ..++-++.+.++++.+.+
T Consensus 90 ~~------q~~-~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v-~~~dl--~~ll~~h~~~~a~~ti~~- 156 (436)
T PLN02241 90 AT------QTP-GEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHL-YRMDY--MDFVQKHRESGADITIAC- 156 (436)
T ss_pred Cc------ccC-CCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeE-EccCH--HHHHHHHHHcCCCEEEEE-
Confidence 00 000 011257888775543322 233222123478999999985 44543 345666767777765543
Q ss_pred eccCC-CCccceEEEEEecCCCceecceeEEEecccCccccC-CCCCC-------CCCcccccc-cceeeEEEeHHHHHh
Q 008919 160 KRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT-RGPFS-------SNGLQADFP-ANTNILYVDLASAEL 229 (548)
Q Consensus 160 ~rK~~-~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~-~~~~~-------~g~l~s~f~-~Ninnl~~~L~~l~~ 229 (548)
.+... ....-|++.. ..+| .++++.|-|..... .-..+ +......-. .|+....|+-+.+..
T Consensus 157 ~~v~~~~~~~ygvv~~--d~~~------~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ 228 (436)
T PLN02241 157 LPVDESRASDFGLMKI--DDTG------RIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLK 228 (436)
T ss_pred EecchhhcCcceEEEE--CCCC------CEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHH
Confidence 33221 1235677754 1334 36666665543100 00000 000000112 399999999998887
Q ss_pred hhc
Q 008919 230 VGS 232 (548)
Q Consensus 230 ~l~ 232 (548)
+++
T Consensus 229 ll~ 231 (436)
T PLN02241 229 LLR 231 (436)
T ss_pred HHH
Confidence 765
No 28
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=74.75 E-value=88 Score=30.59 Aligned_cols=160 Identities=14% Similarity=0.209 Sum_probs=88.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcC-CCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLR-WFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~-~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.|+++++..++++... | . -.++|.|+. .++.+.+++.+.. .+|+ ++.
T Consensus 25 llpv~g~pli~~~l~~l~~~--------g--~-~~v~iv~~~---~~~~~~~~l~~~~~~~~~---~i~----------- 76 (233)
T cd06425 25 LVEFCNKPMIEHQIEALAKA--------G--V-KEIILAVNY---RPEDMVPFLKEYEKKLGI---KIT----------- 76 (233)
T ss_pred cCeECCcchHHHHHHHHHHC--------C--C-cEEEEEeee---CHHHHHHHHhcccccCCe---EEE-----------
Confidence 78999999999998887652 3 2 256888887 6778888887431 1221 111
Q ss_pred cCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.. ....|-|-|+-..... +.+. ..-+-+.+.+.|++. ..| +-.++..+...+.+..+.+
T Consensus 77 -------~~----~~~~~~G~~~al~~a~-----~~~~-~~~~~~lv~~~D~~~-~~~--~~~~~~~~~~~~~~~~~~~- 135 (233)
T cd06425 77 -------FS----IETEPLGTAGPLALAR-----DLLG-DDDEPFFVLNSDVIC-DFP--LAELLDFHKKHGAEGTILV- 135 (233)
T ss_pred -------ec----cCCCCCccHHHHHHHH-----HHhc-cCCCCEEEEeCCEee-CCC--HHHHHHHHHHcCCCEEEEE-
Confidence 10 0123556544322221 2222 211235666777653 233 3345667777777776664
Q ss_pred eccCCCCccceEEEEEecC-CCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhh
Q 008919 160 KRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~-dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
.+... ..+-|++... . +|+ ++++.|=|... .+.+ .|++.++|+-+.++.+
T Consensus 136 ~~~~~-~~~~g~v~~d--~~~~~------v~~~~ekp~~~-----------~~~~-~~~Giyi~~~~~l~~l 186 (233)
T cd06425 136 TKVED-PSKYGVVVHD--ENTGR------IERFVEKPKVF-----------VGNK-INAGIYILNPSVLDRI 186 (233)
T ss_pred EEcCC-ccccCeEEEc--CCCCE------EEEEEECCCCC-----------CCCE-EEEEEEEECHHHHHhc
Confidence 44332 2356777541 2 343 56665544321 1122 4999999998887654
No 29
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=74.12 E-value=77 Score=34.36 Aligned_cols=164 Identities=13% Similarity=0.098 Sum_probs=83.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+. | . ...+|.+.. ..+...++++++. .+.+..|.
T Consensus 23 ll~v~gkpli~~~l~~l~~~--------g--~-~~iivvv~~---~~~~i~~~~~~~~-------~i~~v~~~------- 74 (450)
T PRK14360 23 LHPLGGKSLVERVLDSCEEL--------K--P-DRRLVIVGH---QAEEVEQSLAHLP-------GLEFVEQQ------- 74 (450)
T ss_pred cCEECChhHHHHHHHHHHhC--------C--C-CeEEEEECC---CHHHHHHHhcccC-------CeEEEEeC-------
Confidence 68999999999998887642 3 1 256666665 3445666665321 22222111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
.+.|.++-+.+.. +.+.+ .-.+++|...|.++...+ .+-.++-.+...+.++.... .
T Consensus 75 ---------------~~~G~~~sv~~~~-----~~l~~-~~~~vlV~~~D~P~i~~~-~l~~ll~~~~~~~~~~~~~~-~ 131 (450)
T PRK14360 75 ---------------PQLGTGHAVQQLL-----PVLKG-FEGDLLVLNGDVPLLRPE-TLEALLNTHRSSNADVTLLT-A 131 (450)
T ss_pred ---------------CcCCcHHHHHHHH-----HHhhc-cCCcEEEEeCCccccCHH-HHHHHHHHHHhcCCcEEEEE-E
Confidence 1344444332221 22221 124688899999875431 12122444444555554432 3
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+...+. .-|.+.. ..+|+ ....+|...+.+.. .. ..-.|+..++|+-+.+.++++
T Consensus 132 ~~~~~~-~~g~~~~--d~~g~---v~~~~ek~~~~~~~--------~~---~~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 132 RLPNPK-GYGRVFC--DGNNL---VEQIVEDRDCTPAQ--------RQ---NNRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred ecCCCC-CccEEEE--CCCCC---EEEEEECCCCChhH--------hc---CcEEEEEEEEEEHHHHHHHHh
Confidence 332332 3455532 24454 12333432222111 00 112488999999988887764
No 30
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=73.03 E-value=95 Score=32.15 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
||||.||+++++.++.+.. .| . -.++|.+.. ...+..+++|.....||+ ++.+-.|.
T Consensus 24 Llpv~gkPmI~~~L~~l~~--------aG--i-~~I~iv~~~--~~~~~~~~~lg~g~~~g~---~i~~~~q~------- 80 (286)
T TIGR01207 24 LLPIYDKPMIYYPLSTLML--------AG--I-RDILIISTP--QDTPRFQQLLGDGSQWGV---NLSYAVQP------- 80 (286)
T ss_pred eeEECCEEhHHHHHHHHHH--------CC--C-CEEEEEecC--CcHHHHHHHhccccccCc---eEEEEEcc-------
Confidence 6899999999998888753 24 2 245556665 355677888876566776 34333331
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
.|-|-|+-+..... +... +-..+...||++...|- -.++-.+...+.++.+.+ .
T Consensus 81 ---------------~~~Gta~al~~a~~------~l~~--~~~~li~gD~i~~~~~l--~~ll~~~~~~~~~~ti~~-~ 134 (286)
T TIGR01207 81 ---------------SPDGLAQAFIIGED------FIGG--DPSALVLGDNIFYGHDL--SDLLKRAAARESGATVFA-Y 134 (286)
T ss_pred ---------------CCCCHHHHHHHHHH------HhCC--CCEEEEECCEeccccCH--HHHHHHHHhcCCCcEEEE-E
Confidence 45565554333221 1211 33455579998754442 233444555555554443 2
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHH
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAE 228 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~ 228 (548)
+...+ +.-|++.. ..+|+ +++..|=|... .|.+ +|+...+|+-+.++
T Consensus 135 ~v~~p-~~yGvv~~--d~~g~------V~~i~EKp~~~-----------~s~~-~~~GiYi~~~~i~~ 181 (286)
T TIGR01207 135 QVSDP-ERYGVVEF--DSNGR------AISIEEKPAQP-----------KSNY-AVTGLYFYDNRVVE 181 (286)
T ss_pred EccCH-HHCceEEE--CCCCe------EEEEEECCCCC-----------CCCE-EEEEEEEEchHHHH
Confidence 32223 34677754 13454 33333322210 1122 59999999977543
No 31
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=71.76 E-value=96 Score=34.27 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+. | . -.++|.++. ..+...++|++.. . .+.+..|
T Consensus 26 llpi~gkpli~~~l~~l~~~--------g--~-~~iivvv~~---~~~~i~~~~~~~~---~---~~~~~~~-------- 77 (482)
T PRK14352 26 LHTLAGRSMLGHVLHAAAGL--------A--P-QHLVVVVGH---DRERVAPAVAELA---P---EVDIAVQ-------- 77 (482)
T ss_pred eceeCCccHHHHHHHHHHhc--------C--C-CcEEEEECC---CHHHHHHHhhccC---C---ccEEEeC--------
Confidence 68999999999999888642 3 2 367777876 4566777775421 0 1111111
Q ss_pred CCCeeeeecCCCCccccCCCc-hHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHG-dIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
..|.|-| .++.+|. .+.+..-++++|.+.|+++...+ .+-.++-.+...+..+.+..
T Consensus 78 --------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD~P~~~~~-~l~~li~~~~~~~~~~~v~~- 135 (482)
T PRK14352 78 --------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGDVPLLDGE-TLADLVATHTAEGNAVTVLT- 135 (482)
T ss_pred --------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCCeeccCHH-HHHHHHHHHHhcCCeEEEEE-
Confidence 1233433 3555553 22222346889999999865431 12223444444444443332
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccc-cceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFP-ANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~-~Ninnl~~~L~~l~~~l~ 232 (548)
.+. ....+-|.+.. ..+|+ ...++|..+.++.. . ... .|++.+.|+-+.|.+.+.
T Consensus 136 ~~~-~~p~~yg~~~~--~~~g~---V~~~~EKp~~~~~~----------~--~~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 136 TTL-DDPTGYGRILR--DQDGE---VTAIVEQKDATPSQ----------R--AIREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred eec-CCCCCCCEEEE--CCCCC---EEEEEECCCCCHHH----------h--hcceEEEEEEEEEHHHHHHHHH
Confidence 222 22334566543 24555 12445543332221 1 111 499999999988877764
No 32
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=70.44 E-value=1.1e+02 Score=29.97 Aligned_cols=170 Identities=11% Similarity=0.098 Sum_probs=85.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++... | +.-+++.+. ++.+.+++.+ +|. .+.+ .
T Consensus 21 Ll~i~Gkpll~~~l~~l~~~--------~----i~~ivvv~~----~~~i~~~~~~---~~~---~v~~---------~- 68 (245)
T PRK05450 21 LADIGGKPMIVRVYERASKA--------G----ADRVVVATD----DERIADAVEA---FGG---EVVM---------T- 68 (245)
T ss_pred ccccCCcCHHHHHHHHHHhc--------C----CCeEEEECC----cHHHHHHHHH---cCC---EEEE---------C-
Confidence 68999999999999987653 2 222233332 3667777754 232 1111 0
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
. ...+.|-+.+..++.. +...+-.++.+.+.|+++...+. +-.++-.....+.++...+..
T Consensus 69 ~------------~~~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pli~~~~-l~~li~~~~~~~~~~~~~~~~ 129 (245)
T PRK05450 69 S------------PDHPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPLIPPEI-IDQVAEPLANPEADMATLAVP 129 (245)
T ss_pred C------------CcCCCchHHHHHHHHh------cCCCCCCEEEEecCCCCCCCHHH-HHHHHHHHhcCCCCeEeeeee
Confidence 0 0124455555544332 11123468899999999875421 112343333344555555422
Q ss_pred cc---CCCCc-cceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 161 RS---SGATE-GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 161 rK---~~~~e-~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+. ...+. .+++... .+|+ +++..+-+.-. +.+..+.+.-...-.|+....|+-..++.+.+
T Consensus 130 ~~~~~~~~~~~~~~v~~d---~~g~------v~~~~e~~~~~--~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 130 IHDAEEAFNPNVVKVVLD---ADGR------ALYFSRAPIPY--GRDAFADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred cCCHHHhcCcCCCEEEeC---CCCc------EEEecCCCCCC--CCCccccccCccccEEEEEEecCHHHHHHHHh
Confidence 21 11222 3555532 4555 44566554211 01111111000122499999999888887653
No 33
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=69.52 E-value=1.1e+02 Score=29.48 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=85.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++.. .| . -.++|.++. .++...+++.+ + .+.++.|.
T Consensus 20 l~~v~gkpli~~~i~~l~~--------~~--i-~~i~iv~~~---~~~~i~~~~~~---~-----~~~~~~~~------- 70 (229)
T cd02540 20 LHPLAGKPMLEHVLDAARA--------LG--P-DRIVVVVGH---GAEQVKKALAN---P-----NVEFVLQE------- 70 (229)
T ss_pred cceeCCccHHHHHHHHHHh--------CC--C-CeEEEEECC---CHHHHHHHhCC---C-----CcEEEECC-------
Confidence 6899999999998887753 23 2 256777776 46777777654 2 23333331
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.+.|.++ ++.++. .+ +.+.+++++.+.|+++...+ .+-.++-.....+.+..+.+
T Consensus 71 ---------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~~~~~-~i~~l~~~~~~~~~~~~~~~- 126 (229)
T cd02540 71 ---------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPLITPE-TLQRLLEAHREAGADVTVLT- 126 (229)
T ss_pred ---------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccccCHH-HHHHHHHHHHhcCCcEEEEE-
Confidence 0234333 444332 22 22467899999999865431 12122333444445555443
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+...+ ..-|.+.. ..+|+ ...++|..+..+. +.. .+..|++..+|+-+.+.+.++
T Consensus 127 ~~~~~p-~~~~~~~~--~~~~~---v~~~~ek~~~~~~----------~~~-~~~~~~giy~~~~~~~~~~l~ 182 (229)
T cd02540 127 AELEDP-TGYGRIIR--DGNGK---VLRIVEEKDATEE----------EKA-IREVNAGIYAFDAEFLFEALP 182 (229)
T ss_pred EEcCCC-CCccEEEE--cCCCC---EEEEEECCCCChH----------HHh-hceEEeEEEEEEHHHHHHHHH
Confidence 333333 24455533 13454 1233332221110 000 122499999999887776654
No 34
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=65.58 E-value=1.6e+02 Score=32.13 Aligned_cols=162 Identities=13% Similarity=0.105 Sum_probs=86.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++.+. | . -.++|.++. ..+...++|.+.. .+.+..|.
T Consensus 25 l~pi~g~pli~~~l~~l~~~--------g--i-~~iiiv~~~---~~~~i~~~~~~~~-------~i~~~~~~------- 76 (459)
T PRK14355 25 MHPLAGRPMVSWPVAAAREA--------G--A-GRIVLVVGH---QAEKVREHFAGDG-------DVSFALQE------- 76 (459)
T ss_pred eceeCCccHHHHHHHHHHhc--------C--C-CeEEEEECC---CHHHHHHHhccCC-------ceEEEecC-------
Confidence 68999999999988876532 3 1 267888887 5666777765311 23322221
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
.|-|.|+ ++.++ +.+. ..-+++.+.+.|+++... |- -.++-.+...+.++....
T Consensus 77 ---------------~~~Gt~~al~~a~------~~l~-~~~~~vlv~~gD~p~~~~~~i--~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 77 ---------------EQLGTGHAVACAA------PALD-GFSGTVLILCGDVPLLRAETL--QGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ---------------CCCCHHHHHHHHH------HHhh-ccCCcEEEEECCccCcCHHHH--HHHHHHHHhcCCcEEEEE
Confidence 1235554 33322 2232 224789999999986543 31 123444444555544432
Q ss_pred EeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 159 CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 159 v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+...+ ..-|++.. ..+|+ +++..|=|+.. . .... .+..|++.++|+-+++.+.+.
T Consensus 133 -~~~~~~-~~~g~v~~--d~~g~------v~~~~ek~~~~-~----~~~~---~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 133 -ARLENP-FGYGRIVR--DADGR------VLRIVEEKDAT-P----EERS---IREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred -EEcCCC-CcCCEEEE--cCCCC------EEEEEEcCCCC-h----hHhh---ccEEEEEEEEEeHHHHHHHHH
Confidence 333233 23455533 13454 33444322211 0 0000 122499999999988766654
No 35
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=64.91 E-value=96 Score=33.65 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=84.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++.+... + -.++|.++. ..+...+++.+ .+.++.|+
T Consensus 22 l~~v~gkpli~~~l~~l~~~--------~----~~i~vv~~~---~~~~i~~~~~~---------~~~~~~~~------- 70 (448)
T PRK14357 22 LHKISGKPMINWVIDTAKKV--------A----QKVGVVLGH---EAELVKKLLPE---------WVKIFLQE------- 70 (448)
T ss_pred eeEECCeeHHHHHHHHHHhc--------C----CcEEEEeCC---CHHHHHHhccc---------ccEEEecC-------
Confidence 68999999999998876641 2 135666665 34555554431 12223331
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.|.|-++ ++.++. .++ .-+++++.+.|+++...+ .+-.++-.+.+.++++.+.+
T Consensus 71 ---------------~~~g~~~ai~~a~~---~l~-----~~~~vlv~~gD~p~i~~~-~i~~l~~~~~~~~~d~ti~~- 125 (448)
T PRK14357 71 ---------------EQLGTAHAVMCARD---FIE-----PGDDLLILYGDVPLISEN-TLKRLIEEHNRKGADVTILV- 125 (448)
T ss_pred ---------------CCCChHHHHHHHHH---hcC-----cCCeEEEEeCCcccCCHH-HHHHHHHHHHhcCCeEEEEE-
Confidence 1224333 443332 121 136899999999865431 12223455555667766554
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+...+. .-|.+.. .+|+ +..+|...-+... . . .+-.|+...+|+-+.|.+.+.
T Consensus 126 ~~~~~~~-~~g~v~~---d~g~----v~~~e~~~~~~~~------~--~---~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 126 ADLEDPT-GYGRIIR---DGGK----YRIVEDKDAPEEE------K--K---IKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred EEcCCCC-CcEEEEE---cCCe----EEEEECCCCChHH------h--c---CcEEEeEEEEEEHHHHHHHHH
Confidence 3333332 3466543 3565 5566643221110 0 0 122599999999888777664
No 36
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=64.41 E-value=1.4e+02 Score=29.24 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=82.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++.+.+ .| + -.++|.++. ...+...++|.....+|+. +.+-.
T Consensus 25 llpv~~~pli~~~l~~l~~--------~g--i-~~i~vv~~~--~~~~~~~~~l~~~~~~~~~---i~~~~--------- 79 (240)
T cd02538 25 LLPVYDKPMIYYPLSTLML--------AG--I-REILIISTP--EDLPLFKELLGDGSDLGIR---ITYAV--------- 79 (240)
T ss_pred eeEECCEEhHHHHHHHHHH--------CC--C-CEEEEEeCc--chHHHHHHHHhcccccCce---EEEee---------
Confidence 6899999999998887753 24 2 256677775 2446777888764444431 11100
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
...|.|-|+ ++.++. .++ + +..++.+.|++....| +-.++-.+...+.++.+.+
T Consensus 80 -------------~~~~~G~~~al~~a~~---~~~-----~-~~~lv~~gD~~~~~~~--~~~~~~~~~~~~~~~~~~~- 134 (240)
T cd02538 80 -------------QPKPGGLAQAFIIGEE---FIG-----D-DPVCLILGDNIFYGQG--LSPILQRAAAQKEGATVFG- 134 (240)
T ss_pred -------------CCCCCCHHHHHHHHHH---hcC-----C-CCEEEEECCEEEccHH--HHHHHHHHHhcCCCcEEEE-
Confidence 113445544 332221 121 1 3456678888764432 3234555555566665554
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHH
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASA 227 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l 227 (548)
.+... .+.-|++.. ..+|+ ++++.|=|... . ....|++.++|+-+.+
T Consensus 135 ~~~~~-~~~~g~v~~--d~~g~------v~~~~ekp~~~---------~---~~~~~~Giyi~~~~~l 181 (240)
T cd02538 135 YEVND-PERYGVVEF--DENGR------VLSIEEKPKKP---------K---SNYAVTGLYFYDNDVF 181 (240)
T ss_pred EECCc-hhcCceEEe--cCCCc------EEEEEECCCCC---------C---CCeEEEEEEEECHHHH
Confidence 33222 234566643 13454 33443322211 0 0124899999997766
No 37
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=64.24 E-value=5.9 Score=44.21 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=46.1
Q ss_pred ceEEEecCc---eeEEecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccc
Q 008919 66 SFQLFEQPL---VPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVA 134 (548)
Q Consensus 66 qV~~F~Q~~---vP~l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La 134 (548)
+|.|=.|.. --+++ .|..+...+.+++..-|.|||.+ ++-|.+..-.-|||=||||+..
T Consensus 235 ~IsfS~Qk~sTDTIAv~-~dN~pFR~~dG~LlFRPgGHGAL---------ieNLN~ldaDiIFIKNIDNVvp 296 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAVD-PDNTPFRNEDGSLLFRPGGHGAL---------IENLNDLDADIIFIKNIDNVVP 296 (513)
T ss_pred EEEecccCCCCCeeEEC-CCCCccCCCCCCEEeCCCcchHH---------HhhhccccCCEEEEeCccccCC
Confidence 466655543 45666 56888888899999999999974 5566677778999999999985
No 38
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=62.66 E-value=2.4e+02 Score=30.83 Aligned_cols=179 Identities=8% Similarity=0.020 Sum_probs=96.3
Q ss_pred CCCCCCCc-hhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCC----ceEEEecCce
Q 008919 1 MLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQS----SFQLFEQPLV 75 (548)
Q Consensus 1 ~Lpvsgks-llql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~----qV~~F~Q~~v 75 (548)
|||+.|++ ++++.++++.. .| + -.++|.|+. ..+...++|.+. +++.+. .+.++.+
T Consensus 40 llpv~gkp~lI~~~l~~l~~--------~G--i-~~i~vv~~~---~~~~i~~~~~~~--~~~~~~~~~~~i~i~~~--- 100 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCIN--------SG--I-RRIGVLTQY---KAHSLIRHIQRG--WSFFREELGEFVDLLPA--- 100 (425)
T ss_pred eEEECCEEEEhHHHHHHHHH--------CC--C-CeEEEEecC---CHHHHHHHHHhh--hcccccCCCCeEEEeCC---
Confidence 68999996 99999888764 24 2 256888887 788888998752 232111 1111110
Q ss_pred eEEecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCcee
Q 008919 76 PAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLG 155 (548)
Q Consensus 76 P~l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~ 155 (548)
......+-.|-|-|+-.... ++.+.+..-+++.|.+.|++. ..| +-.++-.+...+.++.
T Consensus 101 ------------~~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lVl~gD~l~-~~d--l~~ll~~h~~~~~~~t 160 (425)
T PRK00725 101 ------------QQRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVILAGDHIY-KMD--YSRMLADHVESGADCT 160 (425)
T ss_pred ------------cccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCCeEe-ccC--HHHHHHHHHHcCCCEE
Confidence 00111223456765533322 223333334688999999853 343 3344666667777776
Q ss_pred EEEEeccC-CCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 156 FASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 156 ~~~v~rK~-~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+.+ .+.+ .....-|++.. ..+|+ +.++.|=|... ... ..... .+-.|+..+.|+-+.|.+.+.
T Consensus 161 l~~-~~~~~~~~~~yG~v~~--d~~~~------V~~~~EKp~~~-~~~--~~~~~--~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 161 VAC-LEVPREEASAFGVMAV--DENDR------ITAFVEKPANP-PAM--PGDPD--KSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred EEE-EecchhhcccceEEEE--CCCCC------EEEEEECCCCc-ccc--ccCcc--ceEEEeeEEEEeHHHHHHHHH
Confidence 664 2221 12234677754 13444 33444423221 000 00100 233599999999999877664
No 39
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=62.04 E-value=2.3e+02 Score=30.58 Aligned_cols=181 Identities=13% Similarity=0.094 Sum_probs=94.4
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.|| +++++.++.+.. .| + --++|.|.. ..+...++|.+. +.+....+.++.+ +|.-
T Consensus 30 llPv~gk~plI~~~L~~l~~--------~G--i-~~i~iv~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~--~~~~- 90 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVN--------SG--Y-LRIYVLTQY---KSHSLDRHISQT--WRLSGLLGNYITP--VPAQ- 90 (407)
T ss_pred ceeeCCcceEhHHHHHHHHH--------CC--C-CEEEEEecc---CHHHHHHHHHhC--cCccccCCCeEEE--CCcc-
Confidence 7999998 999999887764 24 1 246788876 788899999742 2221111111110 0000
Q ss_pred cCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.. .-.-.|-|-|+-.... ++.+....-+++.+.+.|++. ..|. -.++-++...++++.+.+
T Consensus 91 ---------~~-~~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~~gD~v~-~~dl--~~l~~~h~~~~~~~ti~~- 151 (407)
T PRK00844 91 ---------QR-LGKRWYLGSADAIYQS-----LNLIEDEDPDYVVVFGADHVY-RMDP--RQMVDFHIESGAGVTVAA- 151 (407)
T ss_pred ---------cC-CCCCcccCCHHHHHHH-----HHHHHhcCCCEEEEecCCEEE-cCCH--HHHHHHHHhcCCcEEEEE-
Confidence 00 0012245666543322 223433344788899999843 3433 244666666677665554
Q ss_pred eccC-CCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~-~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+.+ .....-|++.. ..+|+ +.++.|=|... .......+ ..-.|+..+.|+-+.|.+.+.
T Consensus 152 ~~~~~~~~~~~Gvv~~--d~~g~------v~~~~eKp~~~-~~~~~~~~----~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 152 IRVPREEASAFGVIEV--DPDGR------IRGFLEKPADP-PGLPDDPD----EALASMGNYVFTTDALVDALR 212 (407)
T ss_pred EecchHHcccCCEEEE--CCCCC------EEEEEECCCCc-ccccCCCC----CcEEEeEEEEEeHHHHHHHHH
Confidence 2221 12224577754 13454 33444433321 00000000 122499999999998877664
No 40
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=61.97 E-value=54 Score=31.39 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=50.0
Q ss_pred EEeceEEEEEEEEEecCCCCCceecCCCcceeeccceeceEEEeeeEEe----eCcEeeeeCCC---------------c
Q 008919 401 LWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVL----NKGIDWDCGDN---------------T 461 (548)
Q Consensus 401 ~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~----N~G~~~~~~~~---------------~ 461 (548)
.-...++-|.+.|.+.++.-=+- .| ++| .+.++++++- ++|....+.|. .
T Consensus 46 t~s~~EiV~t~KiyNPN~fPipV---tg---l~y-----~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~ke 114 (161)
T COG5608 46 TNSETEIVGTLKIYNPNPFPIPV---TG---LQY-----AVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIKE 114 (161)
T ss_pred eccceEEEEEEEecCCCCcceee---ec---eEE-----EEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHHH
Confidence 33344777888888777421100 01 233 4555555543 77777777665 4
Q ss_pred cccccceeeeEEEEEEeccceeEeec
Q 008919 462 YWKHDVQWFEALKVILHGNAEFEASD 487 (548)
Q Consensus 462 ~w~~~~~r~e~~~i~~~g~~~f~a~~ 487 (548)
||+-.+++.|.-.|..++++++++.-
T Consensus 115 ~w~~hi~ngErs~Ir~~i~~~v~vg~ 140 (161)
T COG5608 115 WWVTHIENGERSTIRVRIKGVVKVGG 140 (161)
T ss_pred HHHHHhhccCcccEEEEEEEEEEEcc
Confidence 89999999999888888888887753
No 41
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=60.86 E-value=2.2e+02 Score=30.84 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.||++++..++.+... | . -.++|.++. .++...+++.+. +. .+.++.|+
T Consensus 27 ll~v~gkpli~~~l~~l~~~--------g--i-~~ivvv~~~---~~~~i~~~~~~~---~~---~~~~~~~~------- 79 (446)
T PRK14353 27 LHPVAGRPMLAHVLAAAASL--------G--P-SRVAVVVGP---GAEAVAAAAAKI---AP---DAEIFVQK------- 79 (446)
T ss_pred cCEECCchHHHHHHHHHHhC--------C--C-CcEEEEECC---CHHHHHHHhhcc---CC---CceEEEcC-------
Confidence 68999999999999887642 2 1 256777776 566677776531 11 12222220
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.|.|.++ ++.++ +.+ +.+-+++++.+.|.++...+. +-.++- ....+.+..+.+
T Consensus 80 ---------------~~~G~~~sl~~a~------~~l-~~~~~~~lv~~~D~P~i~~~~-l~~l~~-~~~~~~~~~i~~- 134 (446)
T PRK14353 80 ---------------ERLGTAHAVLAAR------EAL-AGGYGDVLVLYGDTPLITAET-LARLRE-RLADGADVVVLG- 134 (446)
T ss_pred ---------------CCCCcHHHHHHHH------HHH-hccCCCEEEEeCCcccCCHHH-HHHHHH-hHhcCCcEEEEE-
Confidence 1334433 33332 222 223467888899998754321 112222 223444554443
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+.. ...+-|.+.. .+|+ ++++.|=|+.. . .+.. .+-.|+..++|+-+.+.+.++
T Consensus 135 ~~~~-~~~~~g~~~~---~~g~------v~~~~ek~~~~----~-~~~~---~~~~~~Giy~~~~~~l~~~l~ 189 (446)
T PRK14353 135 FRAA-DPTGYGRLIV---KGGR------LVAIVEEKDAS----D-EERA---ITLCNSGVMAADGADALALLD 189 (446)
T ss_pred EEeC-CCCcceEEEE---CCCe------EEEEEECCCCC----h-HHhh---ceEEEEEEEEEEHHHHHHHHH
Confidence 3322 2235566643 3454 33444322221 0 0000 122389999999887766654
No 42
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=59.82 E-value=90 Score=29.86 Aligned_cols=118 Identities=8% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCC--ceEEEecCceeE
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQS--SFQLFEQPLVPA 77 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~--qV~~F~Q~~vP~ 77 (548)
|||+.|+ ++++..++.+.. .| + -.++|.|+. ..+...++|.+...+|++.. ++...
T Consensus 23 llpv~g~~pli~~~l~~l~~--------~g--i-~~iivv~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~------- 81 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVN--------SG--I-RNVGVLTQY---KSRSLNDHLGSGKEWDLDRKNGGLFIL------- 81 (200)
T ss_pred eeEECCeeeeHHHHHHHHHH--------CC--C-CEEEEEeCC---ChHHHHHHHhCCCcccCCCCCCCEEEe-------
Confidence 6899998 999999888764 23 2 367889987 67888999987665665311 11111
Q ss_pred EecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 78 VDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 78 l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
. ......+-.|-|.|+-..... +.+.+..-+.+.|.+.|++ ...| +-.++-.+.+.+.++..
T Consensus 82 -~--------~~~~~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~v-~~~~--~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 82 -P--------PQQRKGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDHI-YNMD--YREMLDFHIESGADITV 143 (200)
T ss_pred -C--------cccCCCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCEE-EecC--HHHHHHHHHHcCCCEEE
Confidence 0 000001235667666443332 2233333477889999984 3333 22345555555544443
No 43
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=57.73 E-value=1.4e+02 Score=32.22 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHH
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCER 56 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~ 56 (548)
|+|+.|+++++..++++.. .| . -.++|.++. ..+.+.+++.+
T Consensus 22 l~~i~gkpli~~~l~~l~~--------~g--~-~~iiiv~~~---~~~~i~~~~~~ 63 (451)
T TIGR01173 22 LHPLAGKPMLEHVIDAARA--------LG--P-QKIHVVYGH---GAEQVRKALAN 63 (451)
T ss_pred hceeCCccHHHHHHHHHHh--------CC--C-CeEEEEECC---CHHHHHHHhcC
Confidence 6899999999998887753 23 2 256788887 45667777664
No 44
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.05 E-value=2.6e+02 Score=31.09 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=66.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++.+. | + -.++|.++. ..+...++|+. . .+.+..|.
T Consensus 29 llpi~gkpli~~~l~~l~~~--------g--i-~~ivvv~~~---~~~~i~~~~~~---~-----~i~~v~~~------- 79 (481)
T PRK14358 29 LHPVAGRPMVAWAVKAARDL--------G--A-RKIVVVTGH---GAEQVEAALQG---S-----GVAFARQE------- 79 (481)
T ss_pred ecEECCeeHHHHHHHHHHhC--------C--C-CeEEEEeCC---CHHHHHHHhcc---C-----CcEEecCC-------
Confidence 68999999999988877542 3 2 246677776 55666666642 1 12222221
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.|-|-|+ ++.++. .+. ..-..++|.+.|+++...+ .+-.++..+...+..+.+.+
T Consensus 80 ---------------~~~Gt~~al~~~~~------~l~-~~~~~~lV~~gD~P~i~~~-~l~~ll~~~~~~~~~~ti~~- 135 (481)
T PRK14358 80 ---------------QQLGTGDAFLSGAS------ALT-EGDADILVLYGDTPLLRPD-TLRALVADHRAQGSAMTILT- 135 (481)
T ss_pred ---------------CcCCcHHHHHHHHH------Hhh-CCCCcEEEEeCCeeccCHH-HHHHHHHHHHhcCCeEEEEE-
Confidence 1334444 333332 222 1222367889999876531 22234555556666655443
Q ss_pred eccCCCCccceEEEEEecCCCc
Q 008919 160 KRSSGATEGINVLIEKKNLDGK 181 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~ 181 (548)
.+...+ .+-|++.. ..+|+
T Consensus 136 ~~~~~~-~~yG~v~~--d~~g~ 154 (481)
T PRK14358 136 GELPDA-TGYGRIVR--GADGA 154 (481)
T ss_pred EEcCCC-CCceEEEE--CCCCC
Confidence 333322 34677754 23554
No 45
>PLN02917 CMP-KDO synthetase
Probab=53.25 E-value=2e+02 Score=29.98 Aligned_cols=167 Identities=9% Similarity=0.088 Sum_probs=84.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..+++++.... +..++... .++++.++++++ |. .+..|
T Consensus 66 L~~i~GkPLL~~vi~~a~~~~~-----------~~~VVV~~----~~e~I~~~~~~~---~v-----~vi~~-------- 114 (293)
T PLN02917 66 LVHILGKPMIQRTWERAKLATT-----------LDHIVVAT----DDERIAECCRGF---GA-----DVIMT-------- 114 (293)
T ss_pred eeeECCEEHHHHHHHHHHcCCC-----------CCEEEEEC----ChHHHHHHHHHc---CC-----EEEeC--------
Confidence 6789999999999998764311 22233332 346777777642 21 11111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE-E
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS-C 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~-v 159 (548)
. ...+.|-|.+..++. .+ +....++.+.+.|.++...+ ++-.++-... .+.++.+.+ +
T Consensus 115 ~------------~~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~PlI~~~-tI~~li~~~~-~~~~~iv~t~~ 173 (293)
T PLN02917 115 S------------ESCRNGTERCNEALK------KL-EKKYDIVVNIQGDEPLIEPE-IIDGVVKALQ-AAPDAVFSTAV 173 (293)
T ss_pred C------------cccCCchHHHHHHHH------hc-cCCCCEEEEecCCcCCCCHH-HHHHHHHHHH-hcCCceEEEEe
Confidence 1 012456666655442 22 23457999999999998863 2212333332 333343332 1
Q ss_pred ec-cCCCCccceEEE-EEecCCCceecceeEEEec-c-cCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KR-SSGATEGINVLI-EKKNLDGKWAYGLSCIEYT-E-FDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~r-K~~~~e~vGvL~-~~~~~dG~~~~~~~vVEYs-e-l~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.. +.....+-|.+. .+ +.+|+ .+..+ . +|.+ .+.+.. ... .+-.|+....|+.++|. .+.
T Consensus 174 ~~~~~~~~~~ygrv~vv~-~~~g~------alyfsr~~Ipe~--kd~~~~-~~~--i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 174 TSLKPEDASDPNRVKCVV-DNQGY------AIYFSRGLIPYN--KSGKVN-PQF--PYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred eecCHHHhcCCCceEEEE-CCCCe------EEEeecCcCCcC--CCcccc-ccc--ceEEEEEEEEeCHHHHH-HHH
Confidence 11 221122445542 21 23564 22333 2 3222 111111 111 22239999999999999 443
No 46
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=52.65 E-value=3e+02 Score=28.87 Aligned_cols=178 Identities=10% Similarity=0.087 Sum_probs=90.9
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCC---CceEEEecCcee
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQ---SSFQLFEQPLVP 76 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~---~qV~~F~Q~~vP 76 (548)
|||+.|+ ++++..++.+.. .| . -.++|.+.. -.+...++|.+. +++.. ..+.++ |.
T Consensus 23 llpv~g~~pli~~~l~~l~~--------~g--i-~~i~iv~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~~-~~--- 82 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCIN--------SG--I-RRIGVLTQY---KSHSLNRHIQRG--WDFDGFIDGFVTLL-PA--- 82 (361)
T ss_pred cceecceeeEeeehhhhhhh--------cC--C-ceEEEEecc---ChHHHHHHHHhc--cCccCccCCCEEEe-CC---
Confidence 7999999 799999887764 23 2 256888887 556788888752 23211 111111 00
Q ss_pred EEecCCCeeeeecCCCCccccCCCchH-hHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCcee
Q 008919 77 AVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLG 155 (548)
Q Consensus 77 ~l~~~dg~~~l~~~~~l~~~P~GHGdI-y~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~ 155 (548)
.....-...|.|.|+- +.++ +.+....-+++.+.+.|++. ..| +..++-.+...+.+..
T Consensus 83 -----------~~~~~~~~~~~Gt~~al~~a~------~~~~~~~~~~~lv~~gD~l~-~~~--l~~~l~~~~~~~~~~t 142 (361)
T TIGR02091 83 -----------QQRESGTDWYQGTADAVYQNL------DLIEDYDPEYVLILSGDHIY-KMD--YEKMLDYHIESGADVT 142 (361)
T ss_pred -----------cccCCCCccccCcHHHHHHHH------HHHHhcCCCEEEEecCCEEE-cCC--HHHHHHHHHHcCCCEE
Confidence 0000112235676553 3333 22222234678889999843 332 3334555545555544
Q ss_pred EEEEeccC-CCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 156 FASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 156 ~~~v~rK~-~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+.+ .+.+ ......|++.. ..+|+ +.++.|=|... ...... +. .+-.|++.+.|+-+.+.+.++
T Consensus 143 i~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~--~~~~~~-~~--~~~~~~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 143 IAC-IPVPRKEASRFGVMQV--DEDGR------IVDFEEKPANP--PSIPGM-PD--FALASMGIYIFDKDVLKELLE 206 (361)
T ss_pred EEE-EecChHhcccccEEEE--CCCCC------EEEEEECCCCc--cccccc-cc--ccEEeeeEEEEcHHHHHHHHH
Confidence 443 2222 12234677754 12343 44554433111 000000 11 233599999999988876654
No 47
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=52.56 E-value=78 Score=28.72 Aligned_cols=69 Identities=14% Similarity=0.244 Sum_probs=50.7
Q ss_pred ccCCCcEEEEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcceeeccceeceEEEeeeEEeeCcEeeeeCCC--ccc
Q 008919 386 SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--TYW 463 (548)
Q Consensus 386 si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~G~~~~~~~~--~~w 463 (548)
.|.++.++.+.........+.+.|.|++..+. +. .+..+.+.|.+.| .+...++ -|
T Consensus 16 ~I~~g~~v~lD~~~~~l~~l~I~G~L~f~~~~--~~------------------~L~a~~I~V~~Gg-~l~iGs~~~P~- 73 (125)
T PF10162_consen 16 VIPAGQTVLLDVSTPKLGSLIIGGTLIFDDDR--DI------------------TLRAEYILVEGGG-RLIIGSEDCPF- 73 (125)
T ss_pred EECCCCEEEEcCCChheeEEEEEEEEEEccCC--CC------------------EEEEEEEEECCCC-eEEecCCCCCc-
Confidence 48899999999988889999999999997543 12 5677777888877 6665543 34
Q ss_pred cccceeeeEEEEEEeccce
Q 008919 464 KHDVQWFEALKVILHGNAE 482 (548)
Q Consensus 464 ~~~~~r~e~~~i~~~g~~~ 482 (548)
.-..+|.|+|+..
T Consensus 74 ------~~~~~I~L~G~~~ 86 (125)
T PF10162_consen 74 ------QGKATITLYGRRS 86 (125)
T ss_pred ------CceEEEEEEcCCC
Confidence 2345888998643
No 48
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=52.44 E-value=3e+02 Score=29.94 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=83.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+ .+ . -.++|.++. ..+...+++.+ .++.+..|+
T Consensus 27 l~~i~gkpli~~~l~~l~~--------~~--~-~~iivv~~~---~~~~i~~~~~~--------~~~~~v~~~------- 77 (456)
T PRK14356 27 LQTLLGEPMLRFVYRALRP--------LF--G-DNVWTVVGH---RADMVRAAFPD--------EDARFVLQE------- 77 (456)
T ss_pred ecccCCCcHHHHHHHHHHh--------cC--C-CcEEEEECC---CHHHHHHhccc--------cCceEEEcC-------
Confidence 6899999999999887643 22 1 146677776 44555444432 112221111
Q ss_pred CCCeeeeecCCCCccccCCCc-hHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHG-dIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.|.|-| .++.+ ++.|.+.+-+++.+.+.|.++...+ .+-.++... .+.+..+.+
T Consensus 78 ---------------~~~Gt~~al~~a------~~~l~~~~~d~vlv~~gD~P~i~~~-~i~~li~~~--~~~~~~l~~- 132 (456)
T PRK14356 78 ---------------QQLGTGHALQCA------WPSLTAAGLDRVLVVNGDTPLVTTD-TIDDFLKEA--AGADLAFMT- 132 (456)
T ss_pred ---------------CCCCcHHHHHHH------HHHHhhcCCCcEEEEeCCcccCCHH-HHHHHHHHH--hcCCEEEEE-
Confidence 123333 34443 3445444678999999999876541 111223322 244444443
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+-..+ ..-|++.. .+|+ ....+|-..+++.. ... . ..-.|++.+.|+-+++++++.
T Consensus 133 ~~~~~~-~~~g~v~~---~~g~---V~~~~ek~~~~~~~----~~~--~---~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 133 LTLPDP-GAYGRVVR---RNGH---VAAIVEAKDYDEAL----HGP--E---TGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred EEcCCC-CCceEEEE---cCCe---EEEEEECCCCChHH----hhh--h---cCeEEEEEEEEEHHHHHHHHH
Confidence 232223 24566643 4565 12334433322211 000 0 111389999999998877654
No 49
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=50.07 E-value=1.5e+02 Score=30.23 Aligned_cols=175 Identities=11% Similarity=0.102 Sum_probs=91.1
Q ss_pred CCCCCC-CchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCG-RTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsg-ksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.| +|++|..++++..+. + .-.++|.|+. +.++.+.++|++ ++ . .+.+..|+
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~-------~---~~~i~vvt~~--~~~~~v~~~l~~---~~-~--~~~ii~ep------ 81 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLV-------P---PDRILVVTNE--EYRFLVREQLPE---GL-P--EENIILEP------ 81 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCC-------C---CCcEEEEech--HHHHHHHHHHhh---cC-C--CceEEECC------
Confidence 578887 999999999876431 1 1378888987 345567777765 11 1 12222111
Q ss_pred cCCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHh-CCceEEEEEecCCcccccchhHHHHhhhh---hhcCCce
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHD-NGRKGATVRQVSNVVAATDLTLLALAGIG---LHHGKKL 154 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~-~Gikyi~v~~vDN~La~~Dp~il~~lG~~---~~~~~~~ 154 (548)
.|-|-|+ +..++. .+.+ .+-+++.|.+.|.+....+ .|...+--+ +..+..+
T Consensus 82 ----------------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~~D~~i~~~~-~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 82 ----------------EGRNTAPAIALAAL------YLAKRDPDAVLLVLPSDHLIEDVE-AFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred ----------------CCCCcHHHHHHHHH------HHHhcCCCCeEEEecchhcccCHH-HHHHHHHHHHHHHHcCCEE
Confidence 1122222 333332 2222 2347899999998875221 111112111 2234455
Q ss_pred eEEEEeccCCCCccceEEEEEecCC--CceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 155 GFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 155 ~~~~v~rK~~~~e~vGvL~~~~~~d--G~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+.+ .+. .+..+-|.+... .+ |. ...+....|=|+...++.-..+| .|-.|+..+.|+.+.+.+.++
T Consensus 139 t~gi-~p~-~~~t~yGyI~~~--~~~~~~---~~~V~~f~EKP~~~~a~~~~~~g----~~~wNsGiyi~~~~~l~~~l~ 207 (274)
T cd02509 139 TFGI-KPT-RPETGYGYIEAG--EKLGGG---VYRVKRFVEKPDLETAKEYLESG----NYLWNSGIFLFRAKTFLEELK 207 (274)
T ss_pred EEEe-eec-CCCCCeEEEEeC--CcCCCC---ceEEeEEEECcChHHHHHHhhcC----CeEEECceeeeeHHHHHHHHH
Confidence 5543 333 455577888541 12 11 02444555545432110011111 243499999999999999987
Q ss_pred c
Q 008919 233 S 233 (548)
Q Consensus 233 ~ 233 (548)
+
T Consensus 208 ~ 208 (274)
T cd02509 208 K 208 (274)
T ss_pred H
Confidence 5
No 50
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=48.38 E-value=2.5e+02 Score=26.80 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++... | .. .++|.++. ..+..++++.+...+|+ ++.+..|
T Consensus 23 ll~~~g~pli~~~l~~l~~~--------~--~~-~iivv~~~---~~~~i~~~~~~~~~~~~---~i~~~~~-------- 77 (220)
T cd06426 23 MLKVGGKPILETIIDRFIAQ--------G--FR-NFYISVNY---LAEMIEDYFGDGSKFGV---NISYVRE-------- 77 (220)
T ss_pred cCeECCcchHHHHHHHHHHC--------C--Cc-EEEEECcc---CHHHHHHHHCCccccCc---cEEEEEC--------
Confidence 78999999999998888742 3 22 45677776 56677777765332332 2221111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
-.|.|-|+...++.. ..-+.++|...|++. .. .+-.++-.+...+.++.+.+ .
T Consensus 78 --------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~i~-~~--~~~~l~~~~~~~~~~~~~~~-~ 130 (220)
T cd06426 78 --------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDILT-NL--NYEHLLDFHKENNADATVCV-R 130 (220)
T ss_pred --------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCEee-cc--CHHHHHHHHHhcCCCEEEEE-E
Confidence 013344555443332 114677888888632 22 33344555555566655543 2
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhh
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
+. .....-|++.. .+|+ ++++.+=+. . + .+ .|++..+|+-+.++.+
T Consensus 131 ~~-~~~~~~g~~~~---d~~~------v~~~~ek~~---------~-~---~~-~~~Giy~~~~~~~~~i 176 (220)
T cd06426 131 EY-EVQVPYGVVET---EGGR------ITSIEEKPT---------H-S---FL-VNAGIYVLEPEVLDLI 176 (220)
T ss_pred Ec-CCCCcceEEEE---CCCE------EEEEEECCC---------C-C---Ce-EEEEEEEEcHHHHhhc
Confidence 22 22333555532 2343 334432110 0 0 11 3899999998876543
No 51
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=46.60 E-value=2.6e+02 Score=31.36 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=48.7
Q ss_pred eEEEeeeEEeeCcEeeeeCCCccccccceeeeEEEEEEeccc----eeEeeceeEecCeEEEecCCeEEEEeeCC-CceE
Q 008919 440 RCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNA----EFEASDVTLQGNHVFEVPDGHKLKITSGN-SGLV 514 (548)
Q Consensus 440 ~~~~~~~~V~N~G~~~~~~~~~~w~~~~~r~e~~~i~~~g~~----~f~a~~v~~~g~~~~~vp~g~~~~~~~~~-~~~~ 514 (548)
.+.|+|++|+|.|.+|...+...+-..-.+-.--.+.|.|++ -++..++++.+|....-++-. |..-+ .++.
T Consensus 116 nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~---I~lw~S~g~~ 192 (455)
T TIGR03808 116 GIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTA---IVSFDALGLI 192 (455)
T ss_pred CeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccce---EEEeccCCCE
Confidence 589999999999998864433222222222211122334443 223333555555554443333 22222 3666
Q ss_pred EEeccccccccCCCc-----ceEEEEEeCCeE
Q 008919 515 VQLDPIEQNMMDTGS-----WHWNYKINGSHI 541 (548)
Q Consensus 515 ~~~~~~~~~~~~~~~-----~~w~~~~~~~~~ 541 (548)
++=+-|.. ... ++|.|.-|+.-|
T Consensus 193 V~~N~I~g----~RD~gi~i~r~~~~~dg~~v 220 (455)
T TIGR03808 193 VARNTIIG----ANDNGIEILRSAIGDDGTIV 220 (455)
T ss_pred EECCEEEc----cCCCCeEEEEeeecCCccee
Confidence 66666655 344 677666565533
No 52
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=38.29 E-value=4.1e+02 Score=26.35 Aligned_cols=170 Identities=13% Similarity=0.125 Sum_probs=86.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++.+.+ .| + -.++|-++. ..+...+++++...+|. ++.+-.|..--.+..
T Consensus 23 llpv~~~p~i~~~~~~~~~--------~g--i-~~i~iv~~~---~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 85 (253)
T cd02524 23 MVEIGGRPILWHIMKIYSH--------YG--H-NDFILCLGY---KGHVIKEYFLNYFLHNS---DVTIDLGTNRIELHN 85 (253)
T ss_pred EEEECCEEHHHHHHHHHHh--------CC--C-ceEEEECCC---CHHHHHHHHHhhhhhcC---ceeEeecccceeeec
Confidence 6899999999886666543 24 1 247777776 67889999988655553 233311110000000
Q ss_pred CCCeeeeecCCCC----ccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCcee
Q 008919 81 EDGQWLVMRPFAP----VCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLG 155 (548)
Q Consensus 81 ~dg~~~l~~~~~l----~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~ 155 (548)
.+ .+++.+ ...|-|.|+ ++.++. .+ ..+ +++.+.+.|++. ..|- -.++-++...+.++.
T Consensus 86 ~~-----~~~~~~~~~~~~~~~~t~~al~~a~~------~~-~~~-~~~lv~~gD~i~-~~dl--~~ll~~h~~~~~~~t 149 (253)
T cd02524 86 SD-----IEDWKVTLVDTGLNTMTGGRLKRVRR------YL-GDD-ETFMLTYGDGVS-DVNI--NALIEFHRSHGKLAT 149 (253)
T ss_pred cc-----ccccceeecccCcccccHHHHHHHHH------hc-CCC-CeEEEEcCCEEE-CCCH--HHHHHHHHHcCCCEE
Confidence 00 001111 122445554 333331 11 112 789999999864 3333 234555556666665
Q ss_pred EEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHH
Q 008919 156 FASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAE 228 (548)
Q Consensus 156 ~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~ 228 (548)
+.. ++ +...-|++.. ..+|+ ++++.+=|... + . ..|++.++|+-+.++
T Consensus 150 l~~-~~---~~~~~g~v~~--d~~g~------V~~~~ekp~~~---------~---~-~i~~Giyi~~~~l~~ 197 (253)
T cd02524 150 VTA-VH---PPGRFGELDL--DDDGQ------VTSFTEKPQGD---------G---G-WINGGFFVLEPEVFD 197 (253)
T ss_pred EEE-ec---CCCcccEEEE--CCCCC------EEEEEECCCCC---------C---c-eEEEEEEEECHHHHH
Confidence 543 33 1233466643 13454 33444322110 0 1 148888999866653
No 53
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=37.47 E-value=5.7e+02 Score=27.72 Aligned_cols=160 Identities=12% Similarity=0.147 Sum_probs=80.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.. .| . -.++|.++. ..+...+++.+ .+.+
T Consensus 24 ll~i~Gkpli~~~l~~l~~--------~g--i-~~iivvv~~---~~~~i~~~~~~---------~~~~----------- 69 (458)
T PRK14354 24 LHKVCGKPMVEHVVDSVKK--------AG--I-DKIVTVVGH---GAEEVKEVLGD---------RSEF----------- 69 (458)
T ss_pred hCEeCCccHHHHHHHHHHh--------CC--C-CeEEEEeCC---CHHHHHHHhcC---------CcEE-----------
Confidence 6899999999999988753 23 2 245666676 44555555432 1111
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
+++. .+.|.++ ++.++. .+. ..-+++++.+.|+++... |.. .++-.....+.+....+
T Consensus 70 -----~~~~------~~~g~~~al~~a~~------~l~-~~~d~vlv~~~D~p~i~~~~l~--~li~~~~~~~~~~t~~~ 129 (458)
T PRK14354 70 -----ALQE------EQLGTGHAVMQAEE------FLA-DKEGTTLVICGDTPLITAETLK--NLIDFHEEHKAAATILT 129 (458)
T ss_pred -----EEcC------CCCCHHHHHHHHHH------Hhc-ccCCeEEEEECCccccCHHHHH--HHHHHHHhcCCceEEEE
Confidence 1110 1334433 333332 222 112689999999987654 222 23333333444444333
Q ss_pred EeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 159 CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 159 v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+...+ ...|.+.. ..+|+ ....+|.....+. +. ..+..|+...+|+-+.|.+.++
T Consensus 130 -~~~~~~-~~~g~v~~--d~~~~---V~~~~ek~~~~~~----------~~-~~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 130 -AIAENP-TGYGRIIR--NENGE---VEKIVEQKDATEE----------EK-QIKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred -EEcCCC-CCceEEEE--cCCCC---EEEEEECCCCChH----------Hh-cCcEEEEEEEEEEHHHHHHHHH
Confidence 222222 23555543 13444 1233343321111 00 0133499999999887776654
No 54
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=36.04 E-value=3.8e+02 Score=25.58 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=24.0
Q ss_pred CceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 120 GRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 120 Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
+.+++++.+.|.++...+. +-.++......+.+..+.+
T Consensus 97 ~~d~vlv~~~D~P~i~~~~-i~~~i~~~~~~~~~~~~~~ 134 (223)
T cd02513 97 DFDIVVLLQPTSPLRSAED-IDEAIELLLSEGADSVFSV 134 (223)
T ss_pred CCCEEEEeCCCCCcCCHHH-HHHHHHHHHhCCCCEEEEE
Confidence 4689999999999987522 2133444444455655554
No 55
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=34.70 E-value=4.4e+02 Score=25.64 Aligned_cols=165 Identities=13% Similarity=0.142 Sum_probs=83.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++++.. | +.=++..+. ++.+.+++.+ +|. .+..+
T Consensus 20 l~~i~gkpll~~~l~~l~~~~-------~----i~~ivvv~~----~~~i~~~~~~---~~~-----~~~~~-------- 68 (239)
T cd02517 20 LADIAGKPMIQHVYERAKKAK-------G----LDEVVVATD----DERIADAVES---FGG-----KVVMT-------- 68 (239)
T ss_pred CcccCCcCHHHHHHHHHHhCC-------C----CCEEEEECC----cHHHHHHHHH---cCC-----EEEEc--------
Confidence 689999999999999887421 2 222333332 3677777764 221 11111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhc-CCceeEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHH-GKKLGFAS 158 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~-~~~~~~~~ 158 (548)
. ...+.|.|++..++.. + ....+++.+.+.|+++... +-. .++-.+... +.++...+
T Consensus 69 ~------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli~~~~l~--~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 69 S------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLIPPEMID--QVVAALKDDPGVDMATLA 127 (239)
T ss_pred C------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCCCHHHHH--HHHHHHHhCCCCCEEEEE
Confidence 1 0123466666665532 1 1224789999999988754 221 223322223 44454443
Q ss_pred EeccCCCC----cc-ceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 159 CKRSSGAT----EG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 159 v~rK~~~~----e~-vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+...+. .+ .++... .+|+ +++..+-+... ..+..+.. +. -.|+....|+-+.++.+.+
T Consensus 128 -~~~~~~~~~~~~~~~~v~~~---~~~~------v~~~~~~~~~~--~~~~~~~~--~~-~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 128 -TPISDEEELFNPNVVKVVLD---KDGY------ALYFSRSPIPY--PRDSSEDF--PY-YKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred -EEcCCHHHccCCCCCEEEEC---CCCC------EEEecCCCCCC--CCCCCCCC--ce-eEEEEEEEECHHHHHHHHh
Confidence 3322211 22 344432 4554 34555422110 01101101 11 1399999999998887653
No 56
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=34.31 E-value=48 Score=33.70 Aligned_cols=47 Identities=15% Similarity=0.397 Sum_probs=38.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcC
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLR 58 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~ 58 (548)
|||+-+.+++++++++++.... .=-++|-||+. .+++....++.+++
T Consensus 22 LlpL~~~pmI~~~lervrks~~----------~d~ivvATS~~-~~d~~l~~~~~~~G 68 (241)
T COG1861 22 LLPLGGEPMIEYQLERVRKSKD----------LDKIVVATSDK-EEDDALEEVCRSHG 68 (241)
T ss_pred hhhcCCCchHHHHHHHHhcccc----------ccceEEEecCC-cchhHHHHHHHHcC
Confidence 6899999999999999886554 12589999994 77778888888876
No 57
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=32.92 E-value=4.1e+02 Score=24.73 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=34.9
Q ss_pred eeeEEEEEEeccceeEeece-------eEecCeEEEecCCeEEEEeeCCCc-eEEEec
Q 008919 469 WFEALKVILHGNAEFEASDV-------TLQGNHVFEVPDGHKLKITSGNSG-LVVQLD 518 (548)
Q Consensus 469 r~e~~~i~~~g~~~f~a~~v-------~~~g~~~~~vp~g~~~~~~~~~~~-~~~~~~ 518 (548)
+.+.+.|.+.|.|.+.|+++ .+.|..-.+|=.--++.++..|.| +.+.=+
T Consensus 123 ~~~~l~i~~~g~~~~~~~~l~~~~~~v~~~g~g~~~v~~~~~l~~~~~g~g~i~y~G~ 180 (181)
T PF10988_consen 123 KADELNIEISGSGKVDASKLVAENANVEASGSGDAKVNVTDSLSATASGSGNIYYKGN 180 (181)
T ss_dssp EEEEEEEEEESSCEEEEEEEEEEEEEEEEESSCEEEEEEEEEEEEEEESSCEEEEES-
T ss_pred EEeeEEEEEccceEEEEeeeEEeeEEEEEEcceeEEEEECceEEEEEEEEEEEEEEcC
Confidence 45667888899998887754 567777777776667777766653 655433
No 58
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=32.72 E-value=1.4e+02 Score=26.07 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=46.8
Q ss_pred eeeeEEEEEEeccceeEeeceeEecCeEEEecCCeEEEEeeCCCc---eEEEeccccccccCCCcceEEEEEeC
Q 008919 468 QWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSG---LVVQLDPIEQNMMDTGSWHWNYKING 538 (548)
Q Consensus 468 ~r~e~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~ 538 (548)
.-+|++-.+++|.+++......+.-.+.....+|-.++++.+..+ +...=.||.+ .--|+|.|-|+.
T Consensus 18 ~~~~~~iyv~~G~~~v~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~E----pi~~~GpFVmnt 87 (104)
T PF05726_consen 18 PGHNAFIYVLEGSVEVGGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNE----PIVQYGPFVMNT 87 (104)
T ss_dssp TT-EEEEEEEESEEEETTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S------EEETTEEESS
T ss_pred CCCEEEEEEEECcEEECCCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCC----CEEEECCcccCC
Confidence 446888999999998877777788888888889999999887544 4455578876 367899998854
No 59
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.87 E-value=88 Score=27.16 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceE
Q 008919 5 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQ 68 (548)
Q Consensus 5 sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~ 68 (548)
.|.+.+..-.+-|.+|++ ..+|++++|.....|.++..+.|++.. |..++++|.
T Consensus 11 ~g~~~ipga~e~l~~L~~---------~g~~~~~lTNns~~s~~~~~~~L~~~G-i~~~~~~i~ 64 (101)
T PF13344_consen 11 NGNEPIPGAVEALDALRE---------RGKPVVFLTNNSSRSREEYAKKLKKLG-IPVDEDEII 64 (101)
T ss_dssp ETTEE-TTHHHHHHHHHH---------TTSEEEEEES-SSS-HHHHHHHHHHTT-TT--GGGEE
T ss_pred eCCCcCcCHHHHHHHHHH---------cCCCEEEEeCCCCCCHHHHHHHHHhcC-cCCCcCEEE
Confidence 356667777788888876 348999999875455566666665544 334455544
No 60
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=31.20 E-value=1.7e+02 Score=30.21 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=42.5
Q ss_pred ccccccceeeeEEEEEEeccceeEee---ceeEecC--------eEEEecCCeEEEEeeCCC-ceEEEecccc
Q 008919 461 TYWKHDVQWFEALKVILHGNAEFEAS---DVTLQGN--------HVFEVPDGHKLKITSGNS-GLVVQLDPIE 521 (548)
Q Consensus 461 ~~w~~~~~r~e~~~i~~~g~~~f~a~---~v~~~g~--------~~~~vp~g~~~~~~~~~~-~~~~~~~~~~ 521 (548)
.-+..+..|+|.+-|.|.|.++++.. --.+.+- .+.=||-|.+.+|+...+ .+.+.-+|-+
T Consensus 38 ~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sapa~ 110 (261)
T PF04962_consen 38 ESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSAPAH 110 (261)
T ss_dssp HCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEEE-S
T ss_pred CEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEccccC
Confidence 45777799999999999999999984 3445554 788899999999987644 4555444443
No 61
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=30.85 E-value=2.5e+02 Score=29.39 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=48.6
Q ss_pred eEEEeeeEEeeCcEeeeeCCCccccccceeeeEEEEEEeccceeEeeceeEe--cCeEEEecCCeE-EEEeeCC----Cc
Q 008919 440 RCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQ--GNHVFEVPDGHK-LKITSGN----SG 512 (548)
Q Consensus 440 ~~~~~~~~V~N~G~~~~~~~~~~w~~~~~r~e~~~i~~~g~~~f~a~~v~~~--g~~~~~vp~g~~-~~~~~~~----~~ 512 (548)
|+.+.++.=.++-.........-=...+.|+|.|-|.|-|.+..++.+.+++ +..+.=||-|-+ .++++.+ +.
T Consensus 44 r~i~gg~~p~~~~l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~pae 123 (276)
T PRK00924 44 RIIVGGAMPVTKPLKLEAGKQLGVSYFLERRELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAK 123 (276)
T ss_pred eEEEcccccCCCceecccCccccceeecCCcEEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcE
Confidence 3333333333343444333332233689999999999999999888776554 455667899977 5554332 24
Q ss_pred eEEEecc
Q 008919 513 LVVQLDP 519 (548)
Q Consensus 513 ~~~~~~~ 519 (548)
+.+.-.|
T Consensus 124 f~i~sAP 130 (276)
T PRK00924 124 FYLNSAP 130 (276)
T ss_pred EEEEccc
Confidence 5544444
No 62
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=30.84 E-value=91 Score=30.12 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=33.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCC
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGR 62 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl 62 (548)
|||+.|+++++..++.+.+ .| . -.++|.|.. ..+...+++.+ .++|+
T Consensus 24 llpi~g~~li~~~l~~l~~--------~g--i-~~i~iv~~~---~~~~i~~~~~~-~~~~~ 70 (221)
T cd06422 24 LVPVAGKPLIDHALDRLAA--------AG--I-RRIVVNTHH---LADQIEAHLGD-SRFGL 70 (221)
T ss_pred eeeECCEEHHHHHHHHHHH--------CC--C-CEEEEEccC---CHHHHHHHHhc-ccCCc
Confidence 6899999999999888764 23 1 134566665 78888888876 44554
No 63
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=30.55 E-value=4.1e+02 Score=25.71 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=61.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++.+.+. | . -.++|.++. .-.+.+.+++++..+ .....
T Consensus 25 Llpv~g~pli~~~l~~l~~~--------g--~-~~iivv~~~--~~~~~i~~~l~~~~~-~~~~~--------------- 75 (214)
T cd04198 25 LLPVANKPMIWYPLDWLEKA--------G--F-EDVIVVVPE--EEQAEISTYLRSFPL-NLKQK--------------- 75 (214)
T ss_pred cCEECCeeHHHHHHHHHHHC--------C--C-CeEEEEECH--HHHHHHHHHHHhccc-ccCcc---------------
Confidence 79999999999988887642 3 1 145677775 234567788875421 00000
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
...... ....+-|-|+........ + .+.+.|.+.|.+ ...| +..++-.+...+..+.+..
T Consensus 76 --~~~~~~----~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i-~~~~--l~~~l~~h~~~~~~~t~~~ 135 (214)
T cd04198 76 --LDEVTI----VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLI-TDLP--LIELVDLHRSHDASLTVLL 135 (214)
T ss_pred --eeEEEe----cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccc-cccC--HHHHHHHHhccCCcEEEEE
Confidence 000000 112467778877766553 1 245677777743 2233 2244555555666665543
No 64
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=29.47 E-value=5.2e+02 Score=24.91 Aligned_cols=42 Identities=31% Similarity=0.502 Sum_probs=29.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHH
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCER 56 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~ 56 (548)
|||+.|+++++..++.+... | + -.++|.|.. ..+...+++.+
T Consensus 23 l~~~~g~~li~~~l~~l~~~--------g--i-~~i~vv~~~---~~~~~~~~~~~ 64 (229)
T cd02523 23 LLEINGKPLLERQIETLKEA--------G--I-DDIVIVTGY---KKEQIEELLKK 64 (229)
T ss_pred eeeECCEEHHHHHHHHHHHC--------C--C-ceEEEEecc---CHHHHHHHHhc
Confidence 68999999999988876542 3 2 156777776 56667777764
No 65
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=29.04 E-value=87 Score=32.95 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=32.5
Q ss_pred eceeEecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCC
Q 008919 486 SDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTG 528 (548)
Q Consensus 486 ~~v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (548)
.+..++.+++|..|.|+.|.++.++++.+..+++-.+.....|
T Consensus 225 ~~~~~~~~~vy~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 267 (354)
T PRK00742 225 DGERLKPGHAYIAPGGKHMMVARSGANYRIKLDDGPPVNRHRP 267 (354)
T ss_pred CCCEeeCCEEEEcCCCCEEEEEecCCceEEEECCCCCcCCCCC
Confidence 3567889999999999999998766667777777655333333
No 66
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=28.57 E-value=5.5e+02 Score=24.90 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=49.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++.+.. + + -.++|-|. ++.+.+++++ +|. .++.+
T Consensus 21 l~~i~GkPli~~~i~~l~~~~-------~--~-~~ivv~t~-----~~~i~~~~~~---~~~-----~v~~~-------- 69 (238)
T PRK13368 21 LLDILGKPMIQHVYERAAQAA-------G--V-EEVYVATD-----DQRIEDAVEA---FGG-----KVVMT-------- 69 (238)
T ss_pred cCccCCcCHHHHHHHHHHhcC-------C--C-CeEEEECC-----hHHHHHHHHH---cCC-----eEEec--------
Confidence 689999999999998876531 2 1 13444332 3678888875 232 11111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT 136 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~ 136 (548)
.+ ..+.|.+.+..++.. + +-+++++.+.|+++...
T Consensus 70 ~~------------~~~~g~~~~~~a~~~------~---~~d~~lv~~~D~P~i~~ 104 (238)
T PRK13368 70 SD------------DHLSGTDRLAEVMLK------I---EADIYINVQGDEPMIRP 104 (238)
T ss_pred Cc------------cCCCccHHHHHHHHh------C---CCCEEEEEcCCcCcCCH
Confidence 10 113455555444322 2 56789999999998764
No 67
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=27.38 E-value=2.9e+02 Score=21.93 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=35.9
Q ss_pred ceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEecCCCeeeeecCCCCccccCCCchHhHHHHhcCch
Q 008919 34 TPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIF 113 (548)
Q Consensus 34 IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGll 113 (548)
.+++--+.+ ++.++.++++.+. +.+..+|.+. -+|+.+ |+-+-..+|+.+|-|
T Consensus 28 ~~~~~v~~~--~~~~~~~~~l~~~------------~g~~~vP~v~-i~g~~i------------gg~~~~~~~~~~g~l 80 (84)
T TIGR02180 28 YEVVELDQL--SNGSEIQDYLEEI------------TGQRTVPNIF-INGKFI------------GGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEEeeCC--CChHHHHHHHHHH------------hCCCCCCeEE-ECCEEE------------cCHHHHHHHHHcCCh
Confidence 445555555 3567777777763 2345678876 345432 555777888889988
Q ss_pred hHH
Q 008919 114 KWF 116 (548)
Q Consensus 114 d~l 116 (548)
..+
T Consensus 81 ~~~ 83 (84)
T TIGR02180 81 AEL 83 (84)
T ss_pred hhh
Confidence 776
No 68
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=25.71 E-value=74 Score=30.60 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.8
Q ss_pred CCCCCCCchhHHHHHHHHHHH
Q 008919 1 MLPYCGRTLLEGLIRDLQARE 21 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq 21 (548)
|+++.||+|+++.++++++.+
T Consensus 18 l~~l~gkpLi~~~i~~a~~s~ 38 (217)
T PF02348_consen 18 LKPLGGKPLIEYVIERAKQSK 38 (217)
T ss_dssp GSEETTEEHHHHHHHHHHHTT
T ss_pred hhHhCCccHHHHHHHHHHhCC
Confidence 578899999999999987643
No 69
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=25.68 E-value=70 Score=36.03 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=60.4
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCC-CCCCcccccccceeeEEEeHHHHHhhhccccCCC
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPF-SSNGLQADFPANTNILYVDLASAELVGSSENERS 238 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~-~~g~l~s~f~~Ninnl~~~L~~l~~~l~~~~~~~ 238 (548)
||..++- |+|-+-. ++.||. ..+++||-+|++...-.+... .+++ .| |=--+.+.+.-|+-- .-.
T Consensus 383 VkNeGEP-GGGPFwv-~~~dG~--~SLQIvEssQId~~~~~q~~if~~~T---HF--NPVDLVCgvkdykG~-----kFd 448 (513)
T PF14134_consen 383 VKNEGEP-GGGPFWV-KNEDGT--VSLQIVESSQIDMSNPEQKEIFKNST---HF--NPVDLVCGVKDYKGE-----KFD 448 (513)
T ss_pred cccCCCC-CCCCeEE-ECCCCC--EeeeeehhhhcCCCCHHHHHHHHcCC---CC--CccceEeeccCCCCC-----cCC
Confidence 7877655 5566544 367886 348999999998874111110 1111 22 556666666655421 112
Q ss_pred ccccccccCCCceeecCC-CCcc--ccCceeecccchhhhhhhhccccccccc--ceeeecCccccccccCCCcc
Q 008919 239 LPGMVLNTKKPIVYMDNF-GDTH--SVPGGRLECTMQNIADNFLNTYSSRCYK--GVEDDLDTFMVYNERRRVTS 308 (548)
Q Consensus 239 lp~~ian~KKkipy~D~~-g~~~--~~~~~rLE~~Mqd~~~~f~~~~~~~~~~--~~~~~~~R~~~FsPvKN~~~ 308 (548)
|+. |+|+. |-.+ ++.|-.|-. +-.|.+-- .+|+. .+|+++|- ..|+|||+...
T Consensus 449 L~~----------fvD~~tgFIs~KSk~Gk~LKA--lELPGLWN----GaMa~WnTvFVEVPl-~TFNPVKTVnD 506 (513)
T PF14134_consen 449 LPD----------FVDPNTGFISEKSKNGKELKA--LELPGLWN----GAMADWNTVFVEVPL-ITFNPVKTVND 506 (513)
T ss_pred chh----------ccCCCCceeeecCCCCccchh--hccCCccc----chhcCCceEEEEecc-ccCCCccchhh
Confidence 332 55553 2221 233333221 11244432 23332 35777764 35899999743
No 70
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=25.65 E-value=1.3e+02 Score=26.49 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=21.9
Q ss_pred EEEEEEeccceeEeeceeEecCeEEEecCCeEEEEeeC
Q 008919 472 ALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSG 509 (548)
Q Consensus 472 ~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~~ 509 (548)
+|++.|.|..|+ .++.+...|+||+.-+..++-.
T Consensus 51 ~l~V~lpg~~ew----~~~~aGesF~VpanssF~v~v~ 84 (94)
T PF06865_consen 51 ELEVKLPGEDEW----QTYSAGESFEVPANSSFDVKVK 84 (94)
T ss_dssp EEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEES
T ss_pred EEEEEcCCCccc----EEeCCCCeEEECCCCeEEEEEC
Confidence 345567776655 6788999999999887776643
No 71
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=25.47 E-value=1.6e+02 Score=25.97 Aligned_cols=47 Identities=13% Similarity=0.369 Sum_probs=31.4
Q ss_pred EEEecCCeEEEEeeCCCceEEEeccccccccCCCcceEEEEE-eCCeEEE
Q 008919 495 VFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKI-NGSHIVL 543 (548)
Q Consensus 495 ~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~ 543 (548)
-++||+|-.+.+.|+ |.++-|..+.+..-.+.+-.-...+ +++.|.+
T Consensus 62 ~i~ipa~~~v~l~pg--g~HlmL~g~~~~l~~G~~v~ltL~f~~gg~v~v 109 (110)
T PF04314_consen 62 SIPIPAGSTVELKPG--GYHLMLMGLKRPLKPGDTVPLTLTFEDGGKVTV 109 (110)
T ss_dssp -EEEETT-EEEE-CC--CCEEEEECESS-B-TTEEEEEEEEETTTEEEEE
T ss_pred CEEECCCCeEEecCC--CEEEEEeCCcccCCCCCEEEEEEEECCCCEEEe
Confidence 789999999999887 6888888877765556666666667 4446655
No 72
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.36 E-value=3.7e+02 Score=26.72 Aligned_cols=100 Identities=16% Similarity=0.252 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCC--CCCCceEEEecCceeEEecCCCe
Q 008919 7 RTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFG--RGQSSFQLFEQPLVPAVDAEDGQ 84 (548)
Q Consensus 7 ksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FG--l~~~qV~~F~Q~~vP~l~~~dg~ 84 (548)
-.+.+-.++.|.+|+.-+. ..| ||++----+. .-..+-+.+|++ |+| |+.. =-+|..+-.+.-..+.
T Consensus 50 ~~~~~~li~Ni~~Lr~~~~-~~g----iPVvyTaqp~-~qs~~draLL~d--~WGpgl~~~---p~~~~vv~~l~P~~~D 118 (218)
T COG1535 50 CPLMEQLIANIAKLRIWCK-QAG----IPVVYTAQPG-EQSPEDRALLKD--FWGPGLTAS---PEQQKVVDELAPGADD 118 (218)
T ss_pred CccHHHHHHHHHHHHHHHH-HcC----CcEEEEecCC-cCCHHHHHHHHH--hcCCCCCCC---hhhhhhHHhcCCCCCc
Confidence 3467778899999987443 444 8887766553 456677888876 555 4322 1223333222222222
Q ss_pred eeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEec
Q 008919 85 WLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 129 (548)
Q Consensus 85 ~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~v 129 (548)
++|-+ | =|.|+++|.++++|++.|+..+.+-.|
T Consensus 119 ~vL~k-----w-------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 119 TVLTK-----W-------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred eEEee-----e-------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 22211 2 289999999999999999999887665
No 73
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.51 E-value=91 Score=30.25 Aligned_cols=50 Identities=22% Similarity=0.502 Sum_probs=37.0
Q ss_pred ccccccceeeeEEEEEEeccceeEeece-------eEecCeEEEecCC--eEEEEeeCC
Q 008919 461 TYWKHDVQWFEALKVILHGNAEFEASDV-------TLQGNHVFEVPDG--HKLKITSGN 510 (548)
Q Consensus 461 ~~w~~~~~r~e~~~i~~~g~~~f~a~~v-------~~~g~~~~~vp~g--~~~~~~~~~ 510 (548)
.|....++--|-++.+|+|.|=|+-+|. -.+---.+.+|+| ||.+.++++
T Consensus 84 ~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 84 SFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 5778888999999999999999987753 2333335789999 555565654
No 74
>PRK10579 hypothetical protein; Provisional
Probab=23.35 E-value=1.2e+02 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=24.3
Q ss_pred EEEEEEeccceeEeeceeEecCeEEEecCCeEEEEee
Q 008919 472 ALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITS 508 (548)
Q Consensus 472 ~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~ 508 (548)
+|+|.|-|..|+ .++.+...|+||++-+..|+-
T Consensus 51 ~l~V~Lpg~~ew----~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 51 ALNVLLPGATDW----QVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred EEEEECCCCccc----EEeCCCCEEEECCCCeEEEEE
Confidence 355666776665 688899999999987776653
No 75
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=23.14 E-value=7.6e+02 Score=24.64 Aligned_cols=170 Identities=13% Similarity=0.096 Sum_probs=87.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEE-EecCceeEEe
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQL-FEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~-F~Q~~vP~l~ 79 (548)
|||+.|+++++..++.+.+ .| + --++|.++. ..+...++|.+...+|. ++.+ ++++......
T Consensus 24 llpv~g~pii~~~l~~l~~--------~g--i-~~i~iv~~~---~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 86 (254)
T TIGR02623 24 MVEIGGKPILWHIMKIYSH--------HG--I-NDFIICCGY---KGYVIKEYFANYFLHMS---DVTFHMADNTMEVHH 86 (254)
T ss_pred eeEECCEEHHHHHHHHHHH--------CC--C-CEEEEEcCC---CHHHHHHHHHhhhhccc---CeeEEeccccccccc
Confidence 6899999999887766653 23 1 245666665 67888899876443322 2333 3333333322
Q ss_pred cCCCeee-eecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 80 AEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 80 ~~dg~~~-l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
...+.. .. ...+-.|-|.|+-...... .++ -+.+.+.+.|++ ...|.. .++-.+...+.++.+.+
T Consensus 87 -~~~~~~~~~--~~~~~~~~gt~~al~~~~~--~i~------~e~flv~~gD~i-~~~dl~--~~~~~h~~~~~d~tl~~ 152 (254)
T TIGR02623 87 -KRVEPWRVT--LVDTGESTQTGGRLKRVRE--YLD------DEAFCFTYGDGV-ADIDIK--ALIAFHRKHGKKATVTA 152 (254)
T ss_pred -ccCCcccee--eeecCCcCCcHHHHHHHHH--hcC------CCeEEEEeCCeE-ecCCHH--HHHHHHHHcCCCEEEEE
Confidence 111100 00 0011246777664433322 121 356779999985 344433 44566666677765543
Q ss_pred EeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHH
Q 008919 159 CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASA 227 (548)
Q Consensus 159 v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l 227 (548)
+.. ...-|++.. .+|+ +.++.|=|.. . + . ..|+..+.|+-+.+
T Consensus 153 -~~~---~~~yG~v~~---d~~~------V~~~~Ekp~~--------~-~---~-~i~~Giyi~~~~il 195 (254)
T TIGR02623 153 -VQP---PGRFGALDL---EGEQ------VTSFQEKPLG--------D-G---G-WINGGFFVLNPSVL 195 (254)
T ss_pred -ecC---CCcccEEEE---CCCe------EEEEEeCCCC--------C-C---C-eEEEEEEEEcHHHH
Confidence 322 234567654 2343 2333331211 0 0 1 14999999997765
No 76
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=22.67 E-value=1.9e+02 Score=23.87 Aligned_cols=51 Identities=18% Similarity=0.521 Sum_probs=29.6
Q ss_pred EEEEeccceeEeeceeEecCeEEEecCCeE--EEEeeCCCceEEEeccccccccCCCcceEEEEEeCC
Q 008919 474 KVILHGNAEFEASDVTLQGNHVFEVPDGHK--LKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGS 539 (548)
Q Consensus 474 ~i~~~g~~~f~a~~v~~~g~~~~~vp~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 539 (548)
.+...+ .|+.|.|.|+- +||+ ..+...+.++...+ +|.+ +...-+|.+||.
T Consensus 5 ~f~~~~----~a~~V~v~G~F-----~~W~~~~pm~~~~~~~~~~~-~L~~-----g~y~YkF~Vdg~ 57 (79)
T cd02859 5 TFVWPG----GGKEVYVTGSF-----DNWKKKIPLEKSGKGFSATL-RLPP-----GKYQYKFIVDGE 57 (79)
T ss_pred EEEEcC----CCcEEEEEEEc-----CCCCccccceECCCCcEEEE-EcCC-----CCEEEEEEECCE
Confidence 445555 57888888853 4444 22223334577777 5765 666666666663
No 77
>smart00613 PAW domain present in PNGases and other hypothetical proteins. present in several copies in proteins with unknown function in C. elegans
Probab=22.50 E-value=2.2e+02 Score=24.67 Aligned_cols=52 Identities=21% Similarity=0.463 Sum_probs=35.0
Q ss_pred cCCCcceeeccceeceEEEeee-EEee--CcEeeeeC------CC-ccccccce----eeeEEEEEEecccee
Q 008919 425 ADNGESILQYGYRCGRCKLNNV-KVLN--KGIDWDCG------DN-TYWKHDVQ----WFEALKVILHGNAEF 483 (548)
Q Consensus 425 ~~~g~~i~~~~~~~~~~~~~~~-~V~N--~G~~~~~~------~~-~~w~~~~~----r~e~~~i~~~g~~~f 483 (548)
.+||.++.. ..++|+ +|.. ..|.+..+ +. .+|+.++. .-|.++|++.|.-++
T Consensus 22 ~~dGs~v~~-------~~~~nIeR~vd~~~~~~~~~~~~~e~~~~~I~WkFdl~~~g~~V~ki~Ir~~g~~~~ 87 (89)
T smart00613 22 NEDGSPVQP-------YEVKNIERVVDKELNEVYLHKKRPEEEGNYIYWKFDLKSTGKSVEKVVIRMSGIEEI 87 (89)
T ss_pred CCCCceeee-------EEEeeEEEEEeccCCeEEEEEecCCCCCceEEEEEEccCCCcEEEEEEEEEceEEEe
Confidence 456666533 347777 6777 56666554 33 89998876 578899998885443
No 78
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=22.38 E-value=1.1e+02 Score=29.97 Aligned_cols=43 Identities=16% Similarity=0.410 Sum_probs=34.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcC
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLR 58 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~ 58 (548)
||+++||.+++..++.++.. .+ -.++-||+ ++..|++|+++-.
T Consensus 21 lleV~GkpLI~~v~~al~~~-------~d-----~i~v~isp---~tp~t~~~~~~~g 63 (177)
T COG2266 21 LLEVCGKPLIDRVLEALRKI-------VD-----EIIVAISP---HTPKTKEYLESVG 63 (177)
T ss_pred chhhCCccHHHHHHHHHHhh-------cC-----cEEEEeCC---CCHhHHHHHHhcC
Confidence 57899999999988777651 12 47889998 8899999999843
No 79
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=22.37 E-value=5.7e+02 Score=28.17 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=68.2
Q ss_pred hhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE--EeccCCCCccceEEEEEecCCCceecceeEEE
Q 008919 113 FKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS--CKRSSGATEGINVLIEKKNLDGKWAYGLSCIE 190 (548)
Q Consensus 113 ld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~--v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVE 190 (548)
+..+.+.+-+|+.+.+.|=+ .++|..- ++-.+.+.++++...+ ++++ ++..-|++-. ..+|+ ++|
T Consensus 111 l~~i~~~~~eyvlIlsgDhI-YkmDy~~--ml~~H~~~gadiTv~~~~Vp~~--eas~fGim~~--D~~~~------i~~ 177 (393)
T COG0448 111 LLIIRRSDPEYVLILSGDHI-YKMDYSD--MLDFHIESGADVTVAVKEVPRE--EASRFGVMNV--DENGR------IIE 177 (393)
T ss_pred HHHHHhcCCCEEEEecCCEE-EecCHHH--HHHHHHHcCCCEEEEEEECChH--hhhhcCceEE--CCCCC------EEe
Confidence 44556889999999999965 4567664 4789999999998886 2333 2224666644 35565 777
Q ss_pred ecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhcc
Q 008919 191 YTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSS 233 (548)
Q Consensus 191 Ysel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~~ 233 (548)
+.|=|.++ + .+.++ +...+..|+-+.|.++|++
T Consensus 178 F~eKp~~~----~-~~~~l-----aSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 178 FVEKPADG----P-PSNSL-----ASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred eeeccCcC----C-cccce-----eeeeeEEEcHHHHHHHHHH
Confidence 77766652 0 11112 4799999999999999975
No 80
>smart00728 ChW Clostridial hydrophobic, with a conserved W residue, domain.
Probab=22.31 E-value=84 Score=23.92 Aligned_cols=35 Identities=23% Similarity=0.101 Sum_probs=24.3
Q ss_pred EEeeCcEeeeeCCCcccc--ccceeeeEEEEEEeccc
Q 008919 447 KVLNKGIDWDCGDNTYWK--HDVQWFEALKVILHGNA 481 (548)
Q Consensus 447 ~V~N~G~~~~~~~~~~w~--~~~~r~e~~~i~~~g~~ 481 (548)
.|+|.||.=-..+..+-. -+--|-|+++|.|.+..
T Consensus 2 hVqn~GW~~~v~~G~~aGT~G~~lriEAi~i~l~~~~ 38 (46)
T smart00728 2 HVQNIGWQNWVSDGAIAGTVGQGLRIEAIKINLVNAP 38 (46)
T ss_pred CCccCcccccccCCeEcccCCCCceeEEEEEEEeCCC
Confidence 478999965434444444 44559999999998754
No 81
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.06 E-value=1.8e+02 Score=26.17 Aligned_cols=48 Identities=15% Similarity=0.303 Sum_probs=35.2
Q ss_pred ccccceeeeEEEEEEeccceeEee--ceeEecCeEEEecCCeEEEEeeCCC
Q 008919 463 WKHDVQWFEALKVILHGNAEFEAS--DVTLQGNHVFEVPDGHKLKITSGNS 511 (548)
Q Consensus 463 w~~~~~r~e~~~i~~~g~~~f~a~--~v~~~g~~~~~vp~g~~~~~~~~~~ 511 (548)
|.+--+|.|-. +|+.|.|.++-. -+.++=+.++.||.|..=++..-|.
T Consensus 51 ~~~H~~~dE~~-~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~ 100 (127)
T COG0662 51 LHHHHHRDEHW-YVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGK 100 (127)
T ss_pred cccccCcceEE-EEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 44334455543 678888776654 4778889999999999999887776
No 82
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=21.78 E-value=87 Score=22.42 Aligned_cols=32 Identities=25% Similarity=0.143 Sum_probs=20.8
Q ss_pred EeeCcEeeeeCCCcccc--ccceeeeEEEEEEec
Q 008919 448 VLNKGIDWDCGDNTYWK--HDVQWFEALKVILHG 479 (548)
Q Consensus 448 V~N~G~~~~~~~~~~w~--~~~~r~e~~~i~~~g 479 (548)
|+|.||.--..+..+=. -+-.|.|+++|.|.|
T Consensus 2 vq~~GW~~~~~~G~~aGt~G~~~rlEai~i~L~~ 35 (36)
T PF07538_consen 2 VQNIGWQDWVSNGQTAGTTGQGLRLEAIKIKLTG 35 (36)
T ss_pred cccccCcchhhCceecccCCCCcEEEEEEEEEeC
Confidence 67888873222222222 566799999999876
No 83
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=21.74 E-value=1.5e+02 Score=29.30 Aligned_cols=65 Identities=14% Similarity=0.309 Sum_probs=39.0
Q ss_pred EEEeccceeEeeceeEecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCCcceEEEEE--eCCeEEEEEe
Q 008919 475 VILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKI--NGSHIVLELV 546 (548)
Q Consensus 475 i~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~ 546 (548)
|.+-|.+++...++++.. |.+|. -.+...|+ .|+......++- .-+..|.+.|.+ +.|.+++++.
T Consensus 36 ~~~~G~v~~~~~~i~I~~---~~~~~-s~~~~~p~-~Gi~l~is~~si--~~~~~~~~~~~~i~~~G~~~~~v~ 102 (225)
T smart00328 36 IKLLGIGHYSIYSLSISR---LELPS-SQLRFQPS-KGLRLSISNLSL--RVSGDLKGSLNFIKLEGNFQLSVE 102 (225)
T ss_pred cccccEEEEEEEEEEEEe---ccCCC-CccccCCC-CceEEEEcCceE--EEEEEEEEEEEEEEeeeEEEEEEe
Confidence 333488899999998875 45565 33333333 355555444332 124788888876 6666665554
No 84
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.41 E-value=1.3e+02 Score=32.55 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=44.9
Q ss_pred eCCCcccc---ccceeeeEEEEEEeccceeEeecee-EecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCCc
Q 008919 457 CGDNTYWK---HDVQWFEALKVILHGNAEFEASDVT-LQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGS 529 (548)
Q Consensus 457 ~~~~~~w~---~~~~r~e~~~i~~~g~~~f~a~~v~-~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (548)
+....|-+ ..+.|+..+.+ -||+|=- ++-.++|+.|.+++|.++..+.+.+..+++=.+-....||
T Consensus 192 HMp~gFt~s~a~~L~~~s~l~V-------keaedg~~~~~G~vyvapg~~hl~v~~~~g~~~~~l~~~~~~~~~rPs 261 (350)
T COG2201 192 HMPPGFTASFADRLNRLSQLPV-------KEAEDGERLEPGHVYVAPGDYHLEVSRSGGNYRLKLTDGPPVNGHRPS 261 (350)
T ss_pred cCChhhhHHHHHHHhhhcCcce-------eEccCCCcccCCeEEEecCCceEEEEecCCeeEEEeCCCCCCCCcCCC
Confidence 34444444 34455555555 3555544 7888999999999999998888888888876554444444
No 85
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=21.38 E-value=1.5e+02 Score=24.88 Aligned_cols=30 Identities=27% Similarity=0.623 Sum_probs=19.8
Q ss_pred CceEEEeccccccccCCCcceEEEEEeCCeEEEEE
Q 008919 511 SGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLEL 545 (548)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 545 (548)
+||.+..+|= ++.||++.|.++|-+..+.|
T Consensus 23 ~GL~l~v~~~-----G~kt~~~r~~~~gk~~~~~l 52 (89)
T PF13356_consen 23 PGLYLRVTPS-----GSKTFYFRYRINGKRRRITL 52 (89)
T ss_dssp TTEEEEE-TT-----S-EEEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEeC-----CCeEEEEEEEecceEEEecc
Confidence 4677666663 34789999988877666554
No 86
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=21.23 E-value=1.4e+02 Score=31.99 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=90.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+-||.+++++++.+.+ +| + --++|.+.. ..+.+.++|.+...+|+ +|.+..|..
T Consensus 26 llpI~gkPii~~~l~~L~~--------~G--v-~eivi~~~y---~~~~i~~~~~d~~~~~~---~I~y~~e~~------ 82 (358)
T COG1208 26 LLPIAGKPLIEYVLEALAA--------AG--V-EEIVLVVGY---LGEQIEEYFGDGEGLGV---RITYVVEKE------ 82 (358)
T ss_pred cceeCCccHHHHHHHHHHH--------CC--C-cEEEEEecc---chHHHHHHHhcccccCC---ceEEEecCC------
Confidence 7999999999999888764 34 1 245566666 78899999998766665 444443333
Q ss_pred CCCeeeeecCCCCccccCCCc-hHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHG-dIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
|-|-| .+..++. .+ +-+-.++.+.|++--. | +-.++.++..++....+..
T Consensus 83 ----------------~lGTag~l~~a~~------~l---~~~~f~v~~GDv~~~~-d--l~~l~~~~~~~~~~~~~~~- 133 (358)
T COG1208 83 ----------------PLGTAGALKNALD------LL---GGDDFLVLNGDVLTDL-D--LSELLEFHKKKGALATIAL- 133 (358)
T ss_pred ----------------cCccHHHHHHHHH------hc---CCCcEEEEECCeeecc-C--HHHHHHHHHhccCccEEEE-
Confidence 33333 3333332 11 1177788888876553 2 2234666666644444443
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHH
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAE 228 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~ 228 (548)
++...+ ..-|++.. .++. -.++++.|-|... ... ..-.|+...+|+-+.++
T Consensus 134 ~~~~~~-~~~Gvv~~---~~~~----~~v~~f~ekp~~~-----~~~-----~~~in~Giyi~~~~v~~ 184 (358)
T COG1208 134 TRVLDP-SEFGVVET---DDGD----GRVVEFREKPGPE-----EPP-----SNLINAGIYIFDPEVFD 184 (358)
T ss_pred EecCCC-CcCceEEe---cCCC----ceEEEEEecCCCC-----CCC-----CceEEeEEEEECHHHhh
Confidence 455444 33455543 2121 2466666665321 000 12238888888877665
No 87
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=20.90 E-value=2.2e+02 Score=29.23 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCCchhHHHHHHHHHH-----------HHHh--HHhcCCcccceEEEecCCCCCchH-HHHHHHHHcCCCCCCCCceEE
Q 008919 4 YCGRTLLEGLIRDLQAR-----------EFLY--FKLYGKQCITPVAIMTSSAKNNHE-RITSLCERLRWFGRGQSSFQL 69 (548)
Q Consensus 4 vsgksllql~~e~I~~l-----------q~la--~~~~g~~~~IPl~IMTS~~~~Th~-~T~~~le~~~~FGl~~~qV~~ 69 (548)
+.|+++.+..+||..+- ++.+ -+.+| =-++|||. +|+ -|....|--.-.+++++.+.+
T Consensus 25 I~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G-----~~avmT~~---~h~SGTdR~~Ev~~~l~~~~~~iIV 96 (247)
T COG1212 25 IGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFG-----GEAVMTSK---DHQSGTDRLAEVVEKLGLPDDEIIV 96 (247)
T ss_pred hCCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC-----CEEEecCC---CCCCccHHHHHHHHhcCCCcceEEE
Confidence 46888888888887633 1111 11344 35899998 443 333333333334456788888
Q ss_pred EecCceeEEe
Q 008919 70 FEQPLVPAVD 79 (548)
Q Consensus 70 F~Q~~vP~l~ 79 (548)
=.||-.|++.
T Consensus 97 NvQGDeP~i~ 106 (247)
T COG1212 97 NVQGDEPFIE 106 (247)
T ss_pred EccCCCCCCC
Confidence 9999999996
No 88
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=20.52 E-value=84 Score=30.26 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=31.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHH
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCER 56 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~ 56 (548)
|||+.|+++++..++.+... + + -.+++-+|+ .++.|+.++++
T Consensus 21 Ll~i~GkplI~~vi~~l~~~--------~--i-~~I~Vv~~~---~~~~~~~~l~~ 62 (183)
T TIGR00454 21 LIEVCGRCLIDHVLSPLLKS--------K--V-NNIIIATSP---HTPKTEEYINS 62 (183)
T ss_pred EeEECCEEHHHHHHHHHHhC--------C--C-CEEEEEeCC---CHHHHHHHHhh
Confidence 57899999999999888642 1 1 256788887 67788888875
No 89
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=20.51 E-value=57 Score=24.27 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=11.1
Q ss_pred cCCCCCC---CCceEEE
Q 008919 57 LRWFGRG---QSSFQLF 70 (548)
Q Consensus 57 ~~~FGl~---~~qV~~F 70 (548)
|.|||++ .|||.||
T Consensus 4 n~~FGie~~~sdqIWFY 20 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFY 20 (40)
T ss_pred hhhcCccccccccEEEe
Confidence 6799997 6788875
No 90
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=20.03 E-value=1.1e+03 Score=25.49 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=80.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+ .| . -.+++.++. ..+...++|.. .++.+..|+
T Consensus 27 l~~i~gkpli~~~i~~l~~--------~g--i-~~i~vv~~~---~~~~i~~~~~~--------~~~~~i~~~------- 77 (456)
T PRK09451 27 LHTLAGKPMVQHVIDAANE--------LG--A-QHVHLVYGH---GGDLLKQTLAD--------EPLNWVLQA------- 77 (456)
T ss_pred cceeCChhHHHHHHHHHHh--------cC--C-CcEEEEECC---CHHHHHHhhcc--------CCcEEEECC-------
Confidence 6899999999999887743 23 2 256677776 44555555532 122221111
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.|.|-|+ ++.++. .+. .-+++++.+.|.++...+ .+-.++.... .......+
T Consensus 78 ---------------~~~Gt~~al~~a~~------~l~--~~~~vlV~~gD~P~i~~~-~i~~l~~~~~--~~~~~i~~- 130 (456)
T PRK09451 78 ---------------EQLGTGHAMQQAAP------FFA--DDEDILMLYGDVPLISVE-TLQRLRDAKP--QGGIGLLT- 130 (456)
T ss_pred ---------------CCCCcHHHHHHHHH------hhc--cCCcEEEEeCCcccCCHH-HHHHHHHHhh--cCCEEEEE-
Confidence 2445444 444332 121 236899999999875431 1212233222 22233332
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccc-cceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFP-ANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~-~Ninnl~~~L~~l~~~l~ 232 (548)
.+-..+. .-|++.. .+|+ ...++|....++. .. ... .|+..++|+-+.|.+.++
T Consensus 131 ~~~~~~~-~yG~v~~---~~g~---V~~~~EKp~~~~~----------~~--~~~~~~~GiYi~~~~~l~~~l~ 185 (456)
T PRK09451 131 VKLDNPT-GYGRITR---ENGK---VVGIVEQKDATDE----------QR--QIQEINTGILVANGADLKRWLA 185 (456)
T ss_pred EEcCCCC-CceEEEe---cCCe---EEEEEECCCCChH----------Hh--hccEEEEEEEEEEHHHHHHHHH
Confidence 2222332 3566532 4554 1234443322111 00 112 499999999888877664
Done!