Query 008919
Match_columns 548
No_of_seqs 252 out of 667
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 9.8E-90 3.3E-94 754.4 32.7 432 1-486 136-619 (630)
2 3gue_A UTP-glucose-1-phosphate 100.0 5.7E-76 1.9E-80 632.2 28.8 361 1-429 98-474 (484)
3 3r3i_A UTP--glucose-1-phosphat 100.0 3E-74 1E-78 622.9 27.5 349 1-430 149-513 (528)
4 2oeg_A UTP-glucose-1-phosphate 100.0 1.4E-72 4.9E-77 612.3 15.7 375 1-457 97-490 (505)
5 3oc9_A UDP-N-acetylglucosamine 100.0 2.2E-69 7.6E-74 572.2 27.6 317 1-362 57-382 (405)
6 2yqc_A UDP-N-acetylglucosamine 100.0 2.3E-67 8E-72 571.0 24.1 329 1-370 125-470 (486)
7 1jv1_A Glcnac1P uridyltransfer 100.0 4E-62 1.4E-66 532.0 28.3 309 1-347 124-440 (505)
8 2i5k_A UTP--glucose-1-phosphat 100.0 7.8E-62 2.7E-66 527.7 28.0 352 1-429 114-472 (488)
9 2icy_A Probable UTP-glucose-1- 100.0 5.3E-61 1.8E-65 518.7 27.7 350 1-430 101-457 (469)
10 3st8_A Bifunctional protein GL 94.0 0.47 1.6E-05 50.8 13.2 169 1-233 34-204 (501)
11 3oam_A 3-deoxy-manno-octuloson 86.6 3 0.0001 40.3 9.9 170 1-232 21-197 (252)
12 3brk_X Glucose-1-phosphate ade 83.4 26 0.00088 36.1 15.8 180 1-232 37-221 (420)
13 4ecm_A Glucose-1-phosphate thy 82.1 12 0.00042 36.1 12.1 156 1-228 49-204 (269)
14 3tqd_A 3-deoxy-manno-octuloson 76.5 58 0.002 31.6 15.3 171 1-232 28-206 (256)
15 1yp2_A Glucose-1-phosphate ade 74.2 45 0.0015 34.5 14.3 188 1-233 45-246 (451)
16 4fcu_A 3-deoxy-manno-octuloson 71.2 50 0.0017 32.0 12.9 169 1-232 20-198 (253)
17 3k8d_A 3-deoxy-manno-octuloson 69.1 35 0.0012 33.3 11.3 171 1-232 37-213 (264)
18 3juk_A UDP-glucose pyrophospho 68.4 42 0.0014 32.3 11.7 43 1-57 27-69 (281)
19 1fxo_A Glucose-1-phosphate thy 67.7 86 0.0029 30.7 14.0 160 1-230 27-186 (293)
20 2qh5_A PMI, ALGA, mannose-6-ph 67.1 41 0.0014 33.2 11.5 170 1-233 30-204 (308)
21 3d0j_A Uncharacterized protein 64.6 19 0.00066 32.5 7.5 60 447-509 19-99 (140)
22 4fce_A Bifunctional protein GL 59.0 72 0.0024 32.8 12.0 159 1-233 30-189 (459)
23 2v0h_A Bifunctional protein GL 46.7 1.1E+02 0.0037 31.3 11.0 158 1-232 27-185 (456)
24 1hm9_A GLMU, UDP-N-acetylgluco 46.7 1.1E+02 0.0038 31.5 11.1 161 1-232 33-194 (468)
25 1qwj_A Cytidine monophospho-N- 45.2 1.1E+02 0.0039 28.2 10.0 109 1-158 22-131 (229)
26 2qjv_A Uncharacterized IOLB-li 43.9 42 0.0014 33.5 6.8 73 447-519 20-111 (270)
27 3jtz_A Integrase; four strande 41.1 27 0.00093 28.7 4.2 32 509-545 22-53 (88)
28 1lvw_A Glucose-1-phosphate thy 40.9 2.7E+02 0.0091 27.2 14.5 160 1-230 28-187 (295)
29 3pet_A Putative adhesin; right 39.0 1.1E+02 0.0036 28.9 8.7 51 469-519 147-205 (221)
30 3jx8_A Putative lipoprotein; s 37.2 2.7E+02 0.0091 26.5 11.4 79 439-520 149-235 (250)
31 3cfu_A Uncharacterized lipopro 33.3 88 0.003 28.4 6.7 62 440-502 47-116 (159)
32 1ezi_A CMP-N-acetylneuraminic 32.3 1.7E+02 0.0057 26.9 8.8 108 1-158 23-133 (228)
33 1h7e_A 3-deoxy-manno-octuloson 31.5 2.2E+02 0.0075 26.2 9.6 160 1-231 21-187 (245)
34 3sft_A CHEB, chemotaxis respon 30.2 42 0.0014 31.7 4.1 66 457-529 42-111 (193)
35 1chd_A CHEB methylesterase; ch 29.6 43 0.0015 31.9 4.1 42 488-529 72-113 (203)
36 1hg8_A Endopolygalacturonase; 27.9 4.6E+02 0.016 26.4 11.8 77 437-514 173-254 (349)
37 3es4_A Uncharacterized protein 26.1 98 0.0034 26.8 5.4 51 454-505 46-99 (116)
38 3ju0_A Phage integrase; four s 25.8 80 0.0027 26.9 4.8 31 510-545 23-53 (108)
39 2k6w_A Putative uncharacterize 24.9 1.4E+02 0.0047 25.9 6.2 48 496-545 67-115 (120)
40 1tzf_A Glucose-1-phosphate cyt 23.8 40 0.0014 31.7 2.7 169 1-227 27-199 (259)
41 2oyz_A UPF0345 protein VPA0057 23.3 1E+02 0.0035 25.9 4.8 43 462-508 34-83 (94)
42 3rsb_A Adenosylcobinamide-phos 22.3 34 0.0012 30.8 1.8 42 1-56 21-62 (196)
43 3lyc_A Putative pectinase; str 22.2 4.9E+02 0.017 24.4 11.4 51 469-519 166-224 (241)
44 1a2o_A CHEB methylesterase; ba 21.2 70 0.0024 32.4 4.1 42 488-529 218-259 (349)
45 3pnn_A Conserved domain protei 20.9 5.7E+02 0.02 24.7 13.7 190 1-230 25-228 (303)
46 2oeg_A UTP-glucose-1-phosphate 20.3 71 0.0024 34.5 4.0 50 470-522 439-500 (505)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=9.8e-90 Score=754.37 Aligned_cols=432 Identities=19% Similarity=0.162 Sum_probs=366.1
Q ss_pred CCCC---CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeE
Q 008919 1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPA 77 (548)
Q Consensus 1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~ 77 (548)
+||+ +|+||||+++|||+ + ++| +.||||||||+ +||++|++||++ ||++++||+||+|+++||
T Consensus 136 ~lpv~~~s~ks~lql~~e~i~---~----~~g--~~iPl~IMTS~--~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~ 201 (630)
T 3ogz_A 136 SLPVETATNTTYLAYYLRWAQ---R----VGG--KEVPFVIMTSD--DTHDRTLQLLRE---LQLEVPNLHVLKQGQVFC 201 (630)
T ss_dssp GSBSCTTTCCBHHHHHHHHHH---H----HHC--TTCCEEEEECT--TTHHHHHHHHHH---TTCCCTTEEEEECCCEEC
T ss_pred cceecCCCCCcHHHHHHHHHH---H----HhC--CCCcEEEEecc--cchHHHHHHHHH---hCCCcccEEEEEcCCEEE
Confidence 5788 59999999999999 2 567 89999999999 799999999999 999999999999999999
Q ss_pred EecCCCeeeeecCCCCccccCCCchHhHHHHhcC------------------chhHHHhCCceEEEEEecCCccccc-ch
Q 008919 78 VDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------------------IFKWFHDNGRKGATVRQVSNVVAAT-DL 138 (548)
Q Consensus 78 l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sG------------------lld~l~~~Gikyi~v~~vDN~La~~-Dp 138 (548)
+++++|+++++++++++|+|+||||||.+|+++| +|++|+++|++|+||+||||+|+++ ||
T Consensus 202 i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP 281 (630)
T 3ogz_A 202 FADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIP 281 (630)
T ss_dssp BSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHH
T ss_pred EecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCH
Confidence 9878899999999999999999999999999999 9999999999999999999999887 99
Q ss_pred hHHHHhhhhhhcCCceeEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCcccc----CCCC-CCCCCccccc
Q 008919 139 TLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGI----TRGP-FSSNGLQADF 213 (548)
Q Consensus 139 ~il~~lG~~~~~~~~~~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~----~~~~-~~~g~l~s~f 213 (548)
.| +|+++.++++|++++|+| .+.|++|++|+.++.||++ ++++||||||++++.. ++++ +.+.+.++.|
T Consensus 282 ~~---lG~~~~~~~d~~~kvv~r--~p~E~vG~l~~~~~~dGk~-~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f 355 (630)
T 3ogz_A 282 IS---LALSAEHSLDMNFTCIPR--VPKEPIGLLCRTKKNSGDP-WLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPF 355 (630)
T ss_dssp HH---HHHHHHTTCSEEEEEECC--CSSCSSCEEEEEESSTTSC-CEEEEECHHHHHHHHHHC------------CCCSS
T ss_pred HH---hHHHHhcCCCEEEEEEEC--CCCcceeeEEEEecCCCce-eeeeEEEeccCCHhHhhccCCCccccccccccccc
Confidence 66 899999999999998665 3678889999855678981 1347899999999852 1233 3344558889
Q ss_pred ccceeeEEEeHHHHHhhhccccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeee
Q 008919 214 PANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDD 293 (548)
Q Consensus 214 ~~Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~ 293 (548)
|+|||||||+|++|.+.+.. ..+.+|.++ ||| |+|+++ +.+++++||||||||++++|+. ...++++++
T Consensus 356 ~GNtNnl~~~L~a~~~~l~~-~~~~ip~~v-NpK----~~d~~~-~~~~~~~qLEt~m~d~~~~F~~----~~~~v~~~~ 424 (630)
T 3ogz_A 356 PGSVNTLVFKLSSYVDRLRE-SHGIVPEFI-NPK----YSDETR-RSFKKPARIESLMQDIALLFSE----DDYRVGGTV 424 (630)
T ss_dssp CEEEEEEEEEHHHHHHHHHH-HTTCCCCEE-CCC----BSSSSS-CCBSSCBCEECCGGGGGGGCCT----TTCCEEEEE
T ss_pred cccceeeeEEHHHHHHHHHh-ccCccceec-CCc----ccCCcc-cccCcchhhhhHHHHHHHhccc----cCcceeEEE
Confidence 99999999999999988875 578899777 987 999884 6789999999999999999962 223678999
Q ss_pred cCccccccccCCCcchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCC---cc---CCCc-cccCCCCeEEE
Q 008919 294 LDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPE---IE---GNDK-YIDDGPPYLIL 366 (548)
Q Consensus 294 ~~R~~~FsPvKN~~~~a~~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~---~~---~~~~-~~~~~P~~~v~ 366 (548)
++| .+|+||||+..+|++|.+++ .+++||+|++.|+|+++++||++||++++. ++ +++. +++.+|+ |+
T Consensus 425 V~R-~~F~PVKn~~~~a~~k~~~g--~~~~sp~t~~~dly~~~~~~L~~aG~~v~~~~~~~~~~~~~~~~~~~~P~--i~ 499 (630)
T 3ogz_A 425 FER-FSYQPVKNSLEEAAGLVAQG--NGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPI--IV 499 (630)
T ss_dssp CCG-GGCCBCCBCHHHHHHHHHTT--CCCCBHHHHHHHHHHHHHHHHHHTTCCCCCCCSCSEEETTTTEEECCCSE--EE
T ss_pred ECC-CeeecccCChhHhhhhhccC--CCcCChHHHHHHHHHHHHHHHHHcCceecccccchhhhhcCccccCCCCE--EE
Confidence 999 89999999999998887765 357899999999999999999999999984 32 5677 8889995 99
Q ss_pred eCCCcccc--HHHHhcccCC--C-ccCCCcEEEEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcceeeccceeceE
Q 008919 367 LHPALGLL--WEVTRQKFKG--G-SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRC 441 (548)
Q Consensus 367 l~p~~~~~--~~~~~~k~~~--~-si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~i~~~~~~~~~~ 441 (548)
|+|+|+++ ++++++||++ + +|+++|+|+|+|+ ++++||+|||+|+|.|++ |+.. .+ .|
T Consensus 500 l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~l~LdG~lvI~a~~--~~~~-----~~---------~v 562 (630)
T 3ogz_A 500 LDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRGPT--DSMA-----LP---------HV 562 (630)
T ss_dssp ECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESCEEEESEEEEECCS--STTS-----CC---------EE
T ss_pred EeccccccccHHHHHHHhCCCCCceecCCcEEEEEEE-EEEEEEEEeeEEEEEcCC--CCcc-----Cc---------eE
Confidence 99999999 9999999999 5 8999999999999 999999999999999988 5522 22 27
Q ss_pred EEeeeEEeeCcEeeeeC----CC---------ccccccceeeeEEEEEEeccceeEee
Q 008919 442 KLNNVKVLNKGIDWDCG----DN---------TYWKHDVQWFEALKVILHGNAEFEAS 486 (548)
Q Consensus 442 ~~~~~~V~N~G~~~~~~----~~---------~~w~~~~~r~e~~~i~~~g~~~f~a~ 486 (548)
++++ +|+|+||.|.++ +. .+....+.|.|.+++.+.-++|++|.
T Consensus 563 ~~~~-~v~n~g~~~~~~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~~~~~~~ 619 (630)
T 3ogz_A 563 VRNA-VVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKKTAMAVMDCNTKGESEAG 619 (630)
T ss_dssp ECSE-EEECCCCEEEECCTTC----CCCCHHHHTTTEEEECCCCEEECC---------
T ss_pred Eecc-eEecCCcEEEEcccccccccCCCChhhcccceeEEeeeEEEEEecCCCccccC
Confidence 8888 999999999999 31 27778999999999999999999874
No 2
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=5.7e-76 Score=632.25 Aligned_cols=361 Identities=16% Similarity=0.117 Sum_probs=297.8
Q ss_pred CCCC-CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPY-CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpv-sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|| +|+||||+++|||+++|+ ++| +.||||||||+ +||++|++||++|+|||++++||++|+|+++||++
T Consensus 98 ~~~v~sgksflql~~eqI~~l~~----~~~--~~iPl~IMTS~--~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~ 169 (484)
T 3gue_A 98 LLQVKNGQTFLDFTALQLEHFRQ----VRN--CNVPFMLMNSF--STSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIR 169 (484)
T ss_dssp GSEEETTEEHHHHHHHHHHHHHH----HHT--CCCCEEEEECT--TTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEE
T ss_pred eeecCCCCcHHHHHHHHHHHHHH----HcC--CCceEEEECCc--chhHHHHHHHHhCcccCCCccceEEEEeCceeeEe
Confidence 5788 999999999999999998 678 89999999999 79999999999999999999999999999999999
Q ss_pred cCCCeee-eecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 80 AEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 80 ~~dg~~~-l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
.++..++ ++++++++|+|+||||+|.+|++||+|++|+++|+||+||+||||+++.+||.| +|+++.++++|++++
T Consensus 170 ~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~---lG~~~~~~~d~~~kv 246 (484)
T 3gue_A 170 QDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRL---LDYMHEKQLGFLMEV 246 (484)
T ss_dssp TTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHH---HHHHHHTTCSEEEEE
T ss_pred cCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHH---HHHHHhcCCCEEEEE
Confidence 6544444 467789999999999999999999999999999999999999999666569966 899999999999997
Q ss_pred EeccCCCCccceEEEEE-------ecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhh
Q 008919 159 CKRSSGATEGINVLIEK-------KNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVG 231 (548)
Q Consensus 159 v~rK~~~~e~vGvL~~~-------~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l 231 (548)
++|+.++|+||+||+. .+.||+ +++|||+|+|++...+-...+| ++.| ||||+|+++++|++++
T Consensus 247 -v~Kt~~dekgG~l~~~~~~~~~~~~~dG~----~~vvEyseip~e~~~~f~~~~g--~~~F--NtnNi~~~l~~l~~~l 317 (484)
T 3gue_A 247 -CRRTESDKKGGHLAYKDVIDETTGQTRRR----FVLRESAQCPKEDEDSFQNIAK--HCFF--NTNNIWINLMELKKMM 317 (484)
T ss_dssp -EECCTTCCSSEEEEEEC--------CCCE----EEEEEGGGSCGGGHHHHTCTTT--SCEE--EEEEEEEEHHHHHHHH
T ss_pred -EECCCCCCceeEEEEEccccccccCCCCC----EEEEEeccCCHHHHhhhcCCCC--ceEe--EeeeEEEEHHHHHHHH
Confidence 5666799999999983 123898 9999999999986321122222 2233 9999999999999999
Q ss_pred ccccC--CCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcch
Q 008919 232 SSENE--RSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSS 309 (548)
Q Consensus 232 ~~~~~--~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~ 309 (548)
+. .. ..||+|+ |+ | ++|+. ++.+++++||||||||++.+|. ++++++++| .+|+||||+ ++
T Consensus 318 ~~-~~g~~~Lp~~v-n~-K---~id~~-k~~~~~~iqlE~~~~d~~~~~~--------~~~~ieV~R-~rF~PvKn~-sd 380 (484)
T 3gue_A 318 DE-QLGVLRLPVMR-NP-K---TVNPQ-DSQSTKVYQLEVAMGAAISLFD--------RSEAVVVPR-ERFAPVKTC-SD 380 (484)
T ss_dssp HH-TTTCCCCCCEE-EE-E---ESSTT-CTTSCEEEEEECCGGGGGTTSS--------SEEEEECCG-GGCCCCSSH-HH
T ss_pred Hh-ccCcCCCCcEe-cc-c---eecCC-CCCCCCEeehHHHHHHHHHhCC--------ccEEEEECh-hhccccccc-hH
Confidence 86 32 3579999 54 4 45665 3567899999999999999884 346788999 699999996 33
Q ss_pred hhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCcc---CCCccccCCCCeEEEeCCCccccHHHHhcccCC--
Q 008919 310 AKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE---GNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-- 384 (548)
Q Consensus 310 a~~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~---~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~-- 384 (548)
.+ ++++..+.+.+.. .+..-....| +|.|+|++|+++++|++||++
T Consensus 381 Ll---------------------------~~~Sdly~l~~~~~l~~~~~~~~~~P--~v~L~~~~~~~v~~f~~rf~~gi 431 (484)
T 3gue_A 381 LL---------------------------ALRSDAYQVTEDQRLVLCEERNGKPP--AIDLDGEHYKMIDGFEKLVKGGV 431 (484)
T ss_dssp HH---------------------------HHHSTTEEECTTSCEEECGGGTTCCC--EEEECTTTSSSHHHHHHHHTTCC
T ss_pred HH---------------------------HHhhhceeccCCceEEeccccCCCCC--eEEECchhcCcHHHHHHhcCCCC
Confidence 31 2333333333211 0111112345 699999999999999999999
Q ss_pred CccCCCcEEEEEeceEEEeceEEEEEEEEEecCCCCCceecCCCc
Q 008919 385 GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGE 429 (548)
Q Consensus 385 ~si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~ 429 (548)
|||.++++|+|+|+++|++||+|+|+|+|.|.. |.+...|+|.
T Consensus 432 Psl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~--g~~~~ip~g~ 474 (484)
T 3gue_A 432 PSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLK--EEPLIIGSGR 474 (484)
T ss_dssp CBCTTEEEEEEESSEEECTTCEEEEEEEEEECS--SSCEEECTTC
T ss_pred CChhhCCEEEEecceEECCCcEEEEEEEEEcCC--CCeeecCCCC
Confidence 699999999999999999999999999999988 8888888887
No 3
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=3e-74 Score=622.93 Aligned_cols=349 Identities=18% Similarity=0.235 Sum_probs=290.7
Q ss_pred CCCC-CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPY-CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpv-sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|+ +|+||||++++||+++++ +|| +.||||||||+ +||++|++||++|+||| .||++|+|+++||++
T Consensus 149 ~i~V~sgktflql~~eqI~~l~~----~~g--~~IPl~IMTS~--~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~ 217 (528)
T 3r3i_A 149 LIGVRNENTFLDLTVQQIEHLNK----TYN--TDVPLVLMNSF--NTDEDTKKILQKYNHCR---VKIYTFNQSRYPRIN 217 (528)
T ss_dssp GSEEETTEEHHHHHHHHHHHHHH----HHT--CCCCEEEEECT--TTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEE
T ss_pred ceecCCCCcHHHHHHHHHHHHHH----HhC--CCCCEEEEecc--chhHHHHHHHHhcCccC---CCeEEEEeCCeeeEe
Confidence 4677 799999999999999998 778 89999999999 79999999999999999 499999999999999
Q ss_pred cCCCeeeeec------CCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhc---
Q 008919 80 AEDGQWLVMR------PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH--- 150 (548)
Q Consensus 80 ~~dg~~~l~~------~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~--- 150 (548)
.+|+++++. +++++|+|+||||||.+|++||+|++|+++|+||+||+||||+||++||.| +|+++.+
T Consensus 218 -~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~---Lg~~~~~~~~ 293 (528)
T 3r3i_A 218 -KESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYI---LNHLMNPPNG 293 (528)
T ss_dssp -TTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHH---HHHHSSCSSS
T ss_pred -cCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHH---HHHHHhcccc
Confidence 569999975 789999999999999999999999999999999999999999999999976 7999998
Q ss_pred -CCceeEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHH
Q 008919 151 -GKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAE 228 (548)
Q Consensus 151 -~~~~~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~ 228 (548)
+++|++++ ++|+.++|++|+||+ .||+ +++|||+|+|++.. + +++++++|++ |||||||+|++|+
T Consensus 294 ~~~d~~~kV-v~Kt~~dek~Gvl~~---~dGk----~~vvEyseip~e~~-~----~~~g~~~f~~~Ntnnlw~~L~~L~ 360 (528)
T 3r3i_A 294 KRCEFVMEV-TNKTRADVKGGTLTQ---YEGK----LRLVEIAQVPKAHV-D----EFKSVSKFKIFNTNNLWISLAAVK 360 (528)
T ss_dssp CCCSEEEEE-CCCCTTCCSSCEEEC---SSSS----CEEECTTSSCGGGT-T----TSSCSSSCCCCEEEEEEEEHHHHH
T ss_pred cCCcEEEEE-eEccccCCcccEEEE---ECCe----EEEEEecCCChhHh-h----ccCCcccCCeEEEEEEEEEHHHHH
Confidence 99999996 778899999999997 7999 99999999999962 1 2344669996 9999999999999
Q ss_pred hhhccccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcc
Q 008919 229 LVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTS 308 (548)
Q Consensus 229 ~~l~~~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~ 308 (548)
++++. ....||.|+ ||| ++|. .++++|||++|+|++..|++ ...++++|+. |+||||+.
T Consensus 361 ~v~~~-~~l~Lp~iv-n~K----~vd~-----~~~viqlEt~igd~i~~f~~--------~~~i~VpR~r-F~PvKn~s- 419 (528)
T 3r3i_A 361 RLQEQ-NAIDMEIIV-NAK----TLDG-----GLNVIQLETAVGAAIKSFEN--------SLGINVPRSR-FLPVKTTS- 419 (528)
T ss_dssp HHHHT-TCCCCCCEE-EEE----CCSS-----SSCEEEEEBCSTTCSTTSSS--------CCCEECCGGG-CCBCCSHH-
T ss_pred HHHHh-CCCCCCcee-cCc----ccCC-----CCCEEEeHHHHHHHHHhccC--------cEEEEEehHH-cccccchH-
Confidence 99986 567899887 655 5553 36899999999999998853 2346788875 99999963
Q ss_pred hhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCcc---CCCccccCCCCeEEEeCCCccccHHHHhcccCC-
Q 008919 309 SAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE---GNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG- 384 (548)
Q Consensus 309 ~a~~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~---~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~- 384 (548)
+.. ++++.-+.+.... ...+.....| +|.|+|. |+++++|.+||++
T Consensus 420 dLl---------------------------l~~Sdly~l~~g~l~~~~~r~~~~~P--~v~L~~~-~~~v~~f~~rf~~i 469 (528)
T 3r3i_A 420 DLL---------------------------LVMSNLYSLNAGSLTMSEKREFPTVP--LVKLGSS-FTKVQDYLRRFESI 469 (528)
T ss_dssp HHH---------------------------HHHSTTSEEETTEEECCSSCSSCCCC--EEEECTT-SCSHHHHHHHCSSC
T ss_pred HHH---------------------------HHhcceeEeeCCeEEecccccCCCCC--EEEeCcc-cCcHHHHHHhCCCC
Confidence 321 1222222221100 0111122235 6999999 9999999999998
Q ss_pred CccCCCcEEEEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcc
Q 008919 385 GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGES 430 (548)
Q Consensus 385 ~si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~ 430 (548)
|||.++++|+|+|+++|++||+|+|+|+|.|+. |.+...|+|..
T Consensus 470 P~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~--g~~~~ip~g~~ 513 (528)
T 3r3i_A 470 PDMLELDHLTVSGDVTFGKNVSLKGTVIIIANH--GDRIDIPPGAV 513 (528)
T ss_dssp CEEEEEEEEEEESEEECCTTCEEEEEEEEECCT--TCEEECCTTCE
T ss_pred CCcccCCEEEEecceEECCCcEEEEEEEEEcCC--CCceecCCCCE
Confidence 899999999999999999999999999999988 88888999983
No 4
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=1.4e-72 Score=612.30 Aligned_cols=375 Identities=16% Similarity=0.063 Sum_probs=315.0
Q ss_pred CCCCC-CCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHH-HcCCCCCCCCceEEEecCceeEE
Q 008919 1 MLPYC-GRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCE-RLRWFGRGQSSFQLFEQPLVPAV 78 (548)
Q Consensus 1 ~Lpvs-gksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le-~~~~FGl~~~qV~~F~Q~~vP~l 78 (548)
||||. ||||||++++||++++. ++| +.|||+||||+ +||+.|++||+ +|+|||++++||++|+|+++||+
T Consensus 97 llpV~~gk~fLe~~ie~l~~~~~----~~g--~~ip~viMtS~--~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~ 168 (505)
T 2oeg_A 97 LLEVKDGKTFLDFTALQVQYLRQ----HCS--EHLRFMLMDSF--NTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKI 168 (505)
T ss_dssp GSEEETTEEHHHHHHHHHHHHHH----HTC--TTCEEEEEECH--HHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECE
T ss_pred ccccCCCCcHHHHHHHHHHHHHH----hcC--CCcCEEEEeCC--CCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeE
Confidence 68996 99999999999999998 668 88999999999 79999999999 99999999999999999999999
Q ss_pred ecCCCeee-eecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEE
Q 008919 79 DAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFA 157 (548)
Q Consensus 79 ~~~dg~~~-l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~ 157 (548)
++++++++ +++++.++|+|+||||+|++|++||+|++|+++|++|++|+|+||+.+.+||.| +|++..++++++++
T Consensus 169 ~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~~l---lg~~~~~~ad~~~~ 245 (505)
T 2oeg_A 169 LQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRV---LAYMEKEKIDFLME 245 (505)
T ss_dssp ETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCHHH---HHHHHHHTCSEEEE
T ss_pred ecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCHHH---HHHHHhcCCcEEEE
Confidence 97766877 677777999999999999999999999999999999999999999766679955 89999999999999
Q ss_pred EEeccCCCCccceEEEEEec----CCCc--eecc-eeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHh
Q 008919 158 SCKRSSGATEGINVLIEKKN----LDGK--WAYG-LSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAEL 229 (548)
Q Consensus 158 ~v~rK~~~~e~vGvL~~~~~----~dG~--~~~~-~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~ 229 (548)
+ ++|..+++++|+++.++. .||+ ..|. +.++||+|+|++... ++++.++||+ |||||||+|++|++
T Consensus 246 v-~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~-----~~~g~~~f~~~Ninn~~~~l~~l~~ 319 (505)
T 2oeg_A 246 V-CRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADME-----SFQDINKYSFFNTNNLWIRLPVLLE 319 (505)
T ss_dssp E-EECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHH-----HHHCTTTTCEEEEEEEEEEHHHHHH
T ss_pred E-EEecCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhh-----cccCccccCeeEEEEEEEEHHHHHH
Confidence 7 556668899999997421 5776 1121 679999999998621 1234669996 99999999999999
Q ss_pred hhccccCC--CccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCc
Q 008919 230 VGSSENER--SLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 307 (548)
Q Consensus 230 ~l~~~~~~--~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~ 307 (548)
+++. +.+ .||+|++. |+|+|.|+ .+++++||||||||++.+|. .+++++++|+ +|+||||+.
T Consensus 320 ~~~~-~~~~~~Lp~~vn~--K~i~~~d~----~~~~~~qlE~~~~d~~~~~~--------~~~~~~V~R~-~FsPvKn~~ 383 (505)
T 2oeg_A 320 TMQE-HGGTLPLPVIRNE--KTVDSSNS----ASPKVYQLETAMGAAIAMFE--------SASAIVVPRS-RFAPVKTCA 383 (505)
T ss_dssp HHHH-TTSSCCCCCEEEE--EESSSSCT----TSCEEEEEECCGGGGGGSCT--------TCEEEECCGG-GCCCCSSHH
T ss_pred HHhh-hcCccCCcceecc--cccCCCCC----CCCCeEEEeEHHHHHHHhcC--------cceEEEeccc-eeecccCCC
Confidence 9875 223 57998854 66777663 46899999999999999885 2478899998 899999951
Q ss_pred chhhhhhcccCCCCCCChhhhHHHHHHHHH--HHHHHCCcccCCccCCCccccCCCCeEEEeCCCccccHHHHhcccCCC
Q 008919 308 SSAKKKRKRADMSLHQTPDGSFLDILRNAY--DILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGG 385 (548)
Q Consensus 308 ~~a~~k~~~~~~~~~~tp~s~~~dl~~~~~--~~L~~~g~~v~~~~~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~~ 385 (548)
+|.+++.|+|+.++ +|+. +|..+ ..+|. |.|+|.||+++++|++||++|
T Consensus 384 ----------------dl~~~~sdly~~~~~~~~~~-~~~~~----------~~~p~--i~l~p~~~~~~~~~~~r~~~g 434 (505)
T 2oeg_A 384 ----------------DLLALRSDAYVVTDDFRLVL-DDRCH----------GHPPV--VDLDSAHYKMMNGFEKLVQHG 434 (505)
T ss_dssp ----------------HHHHHHSTTEEECTTCCEEE-CGGGT----------TCCCE--EEECHHHHSSHHHHHHHSTTC
T ss_pred ----------------CHHHHHHHHHhhcCCceEEE-ccccc----------CcCCe--EEEChhHcCcHHHHHHhcCCC
Confidence 55678888888776 4554 33322 23674 999999999999999999995
Q ss_pred --ccCCCcEEEEEeceEEEeceEEEEEEEEEec-CCCCCceecCCCcceeeccceeceEEE-eeeEEeeCcEeeee
Q 008919 386 --SVSKGSELQIEVAEFLWRNVQLDGSLIIVAE-NVMGSTRIADNGESILQYGYRCGRCKL-NNVKVLNKGIDWDC 457 (548)
Q Consensus 386 --si~~~s~L~veG~~~~~~~v~ldG~l~I~a~-~~~g~~~~~~~g~~i~~~~~~~~~~~~-~~~~V~N~G~~~~~ 457 (548)
||+++|+|+|+|+++|++||+|+|+|+|.|. + |+ ++.| +|+.|+|+|+....
T Consensus 435 ~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~--~~------------------~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 435 VPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDS--AS------------------AFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp CCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSC--SS------------------CEECCTTCEEESCEECC--
T ss_pred CCccccCcEEEEEcceEEccCcEEEEEEEEEecCC--CC------------------cEEeCCCCEEeCceechhh
Confidence 9999999999999999999999999999988 5 55 4566 77799999988765
No 5
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=2.2e-69 Score=572.22 Aligned_cols=317 Identities=17% Similarity=0.222 Sum_probs=280.9
Q ss_pred CCCC---CCCchhHHHHHHHHHHHHHhHHh-cCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCcee
Q 008919 1 MLPY---CGRTLLEGLIRDLQAREFLYFKL-YGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVP 76 (548)
Q Consensus 1 ~Lpv---sgksllql~~e~I~~lq~la~~~-~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP 76 (548)
|+|| +||||||++++||+++|+|+.+. +|..+.|||+||||+ +||++|++||++|+|||++++||++|+|+++|
T Consensus 57 ~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~--~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P 134 (405)
T 3oc9_A 57 MFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNE--ETIEEINNYFKEHQYFGLSSEQIHCFPQGMLP 134 (405)
T ss_dssp GCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECT--TTHHHHHHHHHHTGGGGSCTTSEEEEECCEEE
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCC--ccHHHHHHHHHhCcccCCCccceEEEeeCcee
Confidence 5788 99999999999999999998876 666688999999999 69999999999999999999999999999999
Q ss_pred EEecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCcee
Q 008919 77 AVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLG 155 (548)
Q Consensus 77 ~l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~ 155 (548)
|++ .+|+++++++++++|+|+||||+|.+|+++|+||+|+++|++|++|+|+||+|+++ ||.| +|+++.++++++
T Consensus 135 ~i~-~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~---lg~~~~~~~d~~ 210 (405)
T 3oc9_A 135 VVD-FNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNM---IGYMDLLQSEIC 210 (405)
T ss_dssp CBC-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHH---HHHHHHTTCSEE
T ss_pred EEe-cCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHH---HHHHHHcCCCEE
Confidence 997 67999999999999999999999999999999999999999999999999988887 9965 899999999999
Q ss_pred EEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhccc
Q 008919 156 FASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSE 234 (548)
Q Consensus 156 ~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~ 234 (548)
+++ ++|+.++|++|+||+ .||+ ++||||+|+|++ ++.+..+|.+ .|++ ||+||+|+++||+++++
T Consensus 211 ~kv-v~k~~~dek~Gvl~~---~dg~----~~vvEysei~~e--~e~~~~~g~l--~fn~~Ni~~h~fs~~fL~~i~~-- 276 (405)
T 3oc9_A 211 IKI-VKKGFKEEKVGVLVK---EQER----IKVVEYTELTDE--LNKQLSNGEF--IYNCGHISINGYSTSFLEKAAE-- 276 (405)
T ss_dssp EEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGCCTT--TTCBCTTSCB--SSCEEEEEEEEEEHHHHHHHTT--
T ss_pred EEE-EECCCCCCccceEEE---ECCe----eEEEEEeeCCHH--HhhcCCCCce--eeccceeEeeecCHHHHHHhhh--
Confidence 997 667778999999997 6898 899999999998 4555666766 8987 99999999999999983
Q ss_pred cCCCccccccccCCCceeecCCCCc---cccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhh
Q 008919 235 NERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAK 311 (548)
Q Consensus 235 ~~~~lp~~ian~KKkipy~D~~g~~---~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~ 311 (548)
..||+|+|+ |||||+|.+|+. +.++++|||+||+|+|.++. +++.++++|..+|+||||+.+.+
T Consensus 277 --~~l~~h~a~--Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~~--------~~~~~eV~R~~eF~PlKn~~g~~- 343 (405)
T 3oc9_A 277 --YQLPYHIAK--KKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLAT--------KVSIFEIQRFIEFSALKNSLNES- 343 (405)
T ss_dssp --CCCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCS--------CEEEEECCHHHHCCBCCCCTTSS-
T ss_pred --ccCCcEEec--cccCccCCCCCCcccCCcceeehHHHHHHHHHhcc--------ceEEEEEChHhcccceecCCCCC-
Confidence 269999999 999999987752 45789999999988887763 45778999999999999997664
Q ss_pred hhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCccCCCccccCCCC
Q 008919 312 KKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPP 362 (548)
Q Consensus 312 ~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~P~ 362 (548)
.+||+||+.|+++++++||.++|+.+.+.. ...+|++|.
T Consensus 344 ----------~dsp~tar~~l~~~~~~wl~~ag~~~~~~~--~~~~Eispl 382 (405)
T 3oc9_A 344 ----------FDNVNTVKRDWYRLNIYYLKKAGAIVDDSK--SPICEISFR 382 (405)
T ss_dssp ----------SSSHHHHHHHHHHHHHHHHHHTTCEEECSS--CCCEEECTT
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHCCCEEcCCC--CccEEeCcc
Confidence 249999999999999999999999885421 123566664
No 6
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=2.3e-67 Score=570.99 Aligned_cols=329 Identities=18% Similarity=0.168 Sum_probs=284.1
Q ss_pred CCCCC---CCchhHHHHHHHHHHHHHhHHhcC--CcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCce
Q 008919 1 MLPYC---GRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLV 75 (548)
Q Consensus 1 ~Lpvs---gksllql~~e~I~~lq~la~~~~g--~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~v 75 (548)
|+||. ||||||+++++|++++++|.+++| +.+.|||+||||+ +||+.|++||++|+|||++.++|+||+|+++
T Consensus 125 l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~--~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~ 202 (486)
T 2yqc_A 125 CFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSG--PTRNATESFFIENNYFGLNSHQVIFFNQGTL 202 (486)
T ss_dssp GCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECG--GGHHHHHHHHHHTGGGGSCGGGEEEEECCEE
T ss_pred cceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECC--CCHHHHHHHHhhccccCCCcceEEEEecccc
Confidence 57886 999999999999999999988877 7788999999999 7999999999999999999999999999999
Q ss_pred eEEecCCC-eeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCc
Q 008919 76 PAVDAEDG-QWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKK 153 (548)
Q Consensus 76 P~l~~~dg-~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~ 153 (548)
||++. +| ++++++++.++|+|+||||+|.+|+++|+|++|+++|++|++|+|+||+||++ ||.| +|+++.++++
T Consensus 203 P~i~~-dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~---lg~~~~~~~~ 278 (486)
T 2yqc_A 203 PCFNL-QGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIF---IGFAIAKKFD 278 (486)
T ss_dssp ECBCT-TSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHH---HHHHHHHTCS
T ss_pred eeEcC-CCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHH---HHHHHHcCCC
Confidence 99995 79 99999999999999999999999999999999999999999999999999986 9965 8999999999
Q ss_pred eeEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCC--CCccccccc-ceeeEEEeHHHHHhh
Q 008919 154 LGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS--NGLQADFPA-NTNILYVDLASAELV 230 (548)
Q Consensus 154 ~~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~--g~l~s~f~~-Ninnl~~~L~~l~~~ 230 (548)
+++++ ++|+.++|++|++|+. ..||+ ++||||+|+|++. .+..+.+ +.+ .|.. |||||||++++|+++
T Consensus 279 ~~~~v-v~k~~~~e~~Gvl~~~-~~dg~----~~vvEy~E~~~~~-~~~~~~~~~~~~--~~~~~Ni~~~~~~l~~L~~~ 349 (486)
T 2yqc_A 279 LATKV-VRKRDANESVGLIVLD-QDNQK----PCVIEYSEISQEL-ANKKDPQDSSKL--FLRAANIVNHYYSVEFLNKM 349 (486)
T ss_dssp EEEEE-EECCSTTCCCCEEEEE-TTTTE----EEEECGGGSCHHH-HHCEETTEEEEE--SSCEEEEEEEEEEHHHHHHH
T ss_pred EEEEE-EEcCCCCCceeEEEEE-ecCCC----EEEEEEecCCHHH-hhcccccccccc--cccceeEEEEEEeHHHHHHH
Confidence 99996 6777899999999972 12898 8999999999985 2222222 333 5655 999999999999996
Q ss_pred hccccCCC---ccccccccCCCceeecC-CCC---ccccCceeecccchhhhhhhhcccccccccceeeecCcccccccc
Q 008919 231 GSSENERS---LPGMVLNTKKPIVYMDN-FGD---THSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNER 303 (548)
Q Consensus 231 l~~~~~~~---lp~~ian~KKkipy~D~-~g~---~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPv 303 (548)
+.. ..+. ||+|++. |||||+|+ +|. ++.++++||||||||++..|. ..++++++++|+.+||||
T Consensus 350 l~~-~~~~~~~lp~~v~~--Kki~~~d~~~g~~~~p~~pn~~klE~~~~d~~~~~~------l~~~~~~~V~R~~~FsPv 420 (486)
T 2yqc_A 350 IPK-WISSQKYLPFHIAK--KKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVE------LNKFGCLEVDRLDEFSPL 420 (486)
T ss_dssp HHH-HTTCTTTSCCEEEE--ECCCEECTTTCCEECCSSCCEEEEECCGGGGGGGSC------GGGEEEEEECHHHHCCBC
T ss_pred HHh-hcCcccCCcceEec--cccCccccccCeeccCCCCCeeeeeehHhhHHhhcc------cCceEEEEECcccceeee
Confidence 654 3566 9999976 89999996 342 235679999999999888763 126788999999999999
Q ss_pred CCCcchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCccCCCccccCCCCeEEEeCCC
Q 008919 304 RRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPA 370 (548)
Q Consensus 304 KN~~~~a~~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~P~~~v~l~p~ 370 (548)
||+++++ .+||+||+.|+|+++++||++||+++++. ..+|++|. |++.-.
T Consensus 421 Kn~~~~~-----------~dsp~ta~~~l~~~~~~~l~~aG~~~~~~----~~~eisp~--~sy~ge 470 (486)
T 2yqc_A 421 KNADGAK-----------NDTPTTCRNHYLERSSKWVIQNGGVIDNQ----GLVEVDSK--TSYGGE 470 (486)
T ss_dssp CSCTTSS-----------SSSHHHHHHHHHHHHHHHHHHTTCEECTT----CCCBCCTT--TCSSST
T ss_pred cCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCeecCC----CcEEEcce--eeECCC
Confidence 9987664 34999999999999999999999998652 34788996 666644
No 7
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=4e-62 Score=531.96 Aligned_cols=309 Identities=20% Similarity=0.262 Sum_probs=274.8
Q ss_pred CCCC---CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeE
Q 008919 1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPA 77 (548)
Q Consensus 1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~ 77 (548)
|+|| +|+||||+++++|+++|+|+.+++|+.+.|||+||||+ +||+.|++||++|+|||++++||++|+|+++||
T Consensus 124 l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~--~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~ 201 (505)
T 1jv1_A 124 MYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKEFFTKHKYFGLKKENVIFFQQGMLPA 201 (505)
T ss_dssp GCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHHHHHHTGGGGSCGGGEEEEECCEEEC
T ss_pred cceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecC--CCHHHHHHHHHhhhhcCCCcCceEEEEecceEE
Confidence 6889 89999999999999999999888997788999999999 799999999999999999999999999999999
Q ss_pred EecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeE
Q 008919 78 VDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 78 l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~ 156 (548)
+++ +|++++++++.++|+|+||||+|++|+++|+|++|+++|++|++|+|+||+|+.+ ||.+ +|++..+++++++
T Consensus 202 i~~-~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~---lg~~~~~~~~~~~ 277 (505)
T 1jv1_A 202 MSF-DGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRF---IGFCIQKGADCGA 277 (505)
T ss_dssp EET-TSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHH---HHHHHHTTCSEEE
T ss_pred EcC-CCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHH---HHHHHHcCCCEEE
Confidence 995 7999999999999999999999999999999999999999999999999997776 9965 8999999999999
Q ss_pred EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcccc
Q 008919 157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN 235 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~ 235 (548)
++ ++|+.+++++|+||. .||+ +++|||+|+|++. .+....+|.+ .|+. |||||||++++|+++.+. .
T Consensus 278 ~v-~~k~~~~e~~Gvl~~---~dg~----~~vvEy~E~p~~~-~~~~~~~g~~--~~~~~N~~~~~f~l~~L~~i~~~-~ 345 (505)
T 1jv1_A 278 KV-VEKTNPTEPVGVVCR---VDGV----YQVVEYSEISLAT-AQKRSSDGRL--LFNAGNIANHFFTVPFLRDVVNV-Y 345 (505)
T ss_dssp EE-EECCSTTCSCCEEEE---ETTE----EEEECGGGSCHHH-HHCBCTTSSB--SSCEEEEEEEEEEHHHHHHHHHT-T
T ss_pred EE-EEccCCccCcceEEE---ECCe----EEEEEEeeCCHHH-hhhccccccc--ccceeeEEEEEecHHHHHHHHHh-h
Confidence 96 677778999999997 5898 8999999999985 2233334544 7876 999999999999999875 4
Q ss_pred CCCccccccccCCCceeecCCCCc---cccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhh
Q 008919 236 ERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKK 312 (548)
Q Consensus 236 ~~~lp~~ian~KKkipy~D~~g~~---~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~ 312 (548)
.+.||+|++. |||||+|.+|.. +.++++||||||||++..|. ++++++++|+.+|+||||+.+.+
T Consensus 346 ~~~l~~hv~~--Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~~~~~--------~~~~~~V~R~~~FsPvKn~~~~~-- 413 (505)
T 1jv1_A 346 EPQLQHHVAQ--KKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAK--------KFVVYEVLREDEFSPLKNADSQN-- 413 (505)
T ss_dssp GGGCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCS--------SEEEEEECHHHHCCBCCSCTTSS--
T ss_pred cccCCceecc--cccccccCCCCCcCCCCCCceeHHHHHHHHHhhcC--------ceEEEEECcccceeeccCCCCCC--
Confidence 6789999976 899999976533 34678999999999988763 56789999999999999987653
Q ss_pred hhcccCCCCCCChhhhHHHHHHHHHHHHHHCCccc
Q 008919 313 KRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 347 (548)
Q Consensus 313 k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v 347 (548)
. .+||+||+.|+|+++++||++||+++
T Consensus 414 --~------~dsp~ta~~~l~~~~~~~l~~ag~~~ 440 (505)
T 1jv1_A 414 --G------KDNPTTARHALMSLHHCWVLNAGGHF 440 (505)
T ss_dssp --S------SSSHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred --C------CCCHHHHHHHHHHHHHHHHHHCCCee
Confidence 1 34999999999999999999999988
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-62 Score=527.73 Aligned_cols=352 Identities=20% Similarity=0.179 Sum_probs=290.3
Q ss_pred CCCCC-CCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYC-GRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvs-gksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+||. ||||||++++++++++. .+| +.|||+||||+ +||+.|++||+++++||+ +|.+|.|+++||++
T Consensus 114 l~~V~~gk~~Le~~i~~i~~l~~----~~G--~~Ip~vImts~--~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~ 182 (488)
T 2i5k_A 114 VIEVREGNTFLDLSVRQIEYLNR----QYD--SDVPLLLMNSF--NTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVY 182 (488)
T ss_dssp TSCCBTTBCHHHHHHHHHHHHHH----HHT--CCCEEEEECCT--TTHHHHHHHHGGGCSSSC---EEEEECCCCEECEE
T ss_pred ccccCCCCcHHHHHHHHHHHhHH----hcC--CCccEEEEECC--CCHHHHHHHHHhccccCc---eEEEEEeCccceEc
Confidence 68995 99999999999999977 678 88999999998 699999999999999998 79999999999999
Q ss_pred cCCCeeeeecC---CCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccc-cchhHHHHhhhhhhcCCcee
Q 008919 80 AEDGQWLVMRP---FAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLG 155 (548)
Q Consensus 80 ~~dg~~~l~~~---~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~-~Dp~il~~lG~~~~~~~~~~ 155 (548)
.+|+++++.+ +.++|+|+||||+|.+|+.+|++++|.++|++|++|+|+|| |++ .||.+ +|++..++++++
T Consensus 183 -~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~---L~~~~~~~a~~t 257 (488)
T 2i5k_A 183 -KDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKI---LNHMIETGAEYI 257 (488)
T ss_dssp -TTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHH---HHHHHHSCCSEE
T ss_pred -cccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHH---HHHHHhcCCcEE
Confidence 5699999754 47999999999999999999999999999999999999999 665 59965 699999999999
Q ss_pred EEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhccc
Q 008919 156 FASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSE 234 (548)
Q Consensus 156 ~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~ 234 (548)
+++ ++++.+++++|++++ .||+ +.+|||+|++++... .. ++.. .|+. |||||||++++|+++++.
T Consensus 258 ~~v-~~~~~p~~~yG~Iv~---~dG~----~~iVE~~e~~~e~~~-~~--~~~~--~~~~~Ntgi~~f~~~~L~~~l~~- 323 (488)
T 2i5k_A 258 MEL-TDKTRADVKGGTLIS---YDGQ----VRLLEVAQVPKEHID-EF--KNIR--KFTNFNTNNLWINLKAVKRLIES- 323 (488)
T ss_dssp EEE-EECCGGGSSSCEEEE---ETTE----EEEECGGGSCTTSHH-HH--TCTT--TCCEEEEEEEEEEHHHHHHHHHT-
T ss_pred EEE-EEecCCCCceeEEEE---ECCc----EEEEEeccCCHHHHh-hc--cccc--ccCEEEEEEEEEeHHHHHHHHhh-
Confidence 996 677788998999986 5888 999999999998631 11 1222 6776 999999999999999986
Q ss_pred cCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhhh
Q 008919 235 NERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKR 314 (548)
Q Consensus 235 ~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k~ 314 (548)
....||+|++. |+||| |.++ ++++||||||||++.+|.+ ...++++|+ +|+||||+....
T Consensus 324 ~~~~lp~~v~~--K~i~~-~~~~----~~~~qlE~~~~d~~~~~~~--------~~~~~V~R~-~F~PvKn~~~ll---- 383 (488)
T 2i5k_A 324 SNLEMEIIPNQ--KTITR-DGHE----INVLQLETACGAAIRHFDG--------AHGVVVPRS-RFLPVKTCSDLL---- 383 (488)
T ss_dssp TCCCCCCBCCE--ECCCC----------CEECCBCCGGGGGGGSSS--------CEEEEECGG-GCCBCCSHHHHH----
T ss_pred ccCCCcceecC--ccccC-CCCC----CceEEeeehhhhHHhhccC--------ceEEEeccc-ccccccCCccHH----
Confidence 56789999955 78888 6543 4899999999999999852 234567998 899999964221
Q ss_pred cccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCccCCCccccCCCCeEEEeCCCccccHHHHhcccCC-CccCCCcEE
Q 008919 315 KRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSEL 393 (548)
Q Consensus 315 ~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~-~si~~~s~L 393 (548)
+++.+ +|...+|..+..+ ..++++| +|.|+|. +.++++|++||++ |+|.++++|
T Consensus 384 ------------~~~~~------~~~~~~g~~~~~~----~~~e~~P--~v~~~~~-~~~~~~~~~rf~~~p~i~~~~~l 438 (488)
T 2i5k_A 384 ------------LVKSD------LFRLEHGSLKLDP----SRFGPNP--LIKLGSH-FKKVSGFNARIPHIPKIVELDHL 438 (488)
T ss_dssp ------------HHTST------TEEEETTEEEECT----TCCSSCC--EEEECGG-GSSHHHHHHHCSSCCBCTTEEEE
T ss_pred ------------HHHHH------HHHHhcCcEeecC----CcCCCCC--eEEECCc-ccchhhHHhhcCCCccccccceE
Confidence 11111 2333345544221 1266788 5999998 7799999999999 899999999
Q ss_pred EEEeceEEEeceEEEEEEEEEecCCCCCceecCCCc
Q 008919 394 QIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGE 429 (548)
Q Consensus 394 ~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~ 429 (548)
+|+|+++|++||+|+|+|+|.|.+ |.+..+|+|.
T Consensus 439 ~v~Gdv~fg~~v~l~G~v~i~a~~--~~~~~ip~g~ 472 (488)
T 2i5k_A 439 TITGNVFLGKDVTLRGTVIIVCSD--GHKIDIPNGS 472 (488)
T ss_dssp EEESSEEECTTCEEEEEEEEECCT--TCCEEECTTC
T ss_pred EEEeeeEEcCCcEEEEEEEEEcCC--CCeEEeCCCC
Confidence 999999999999999999999888 7755556665
No 9
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=5.3e-61 Score=518.73 Aligned_cols=350 Identities=20% Similarity=0.223 Sum_probs=292.5
Q ss_pred CCCCC-CCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYC-GRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvs-gksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|+. ||||||++++||++++. ++| +.|||+||||+ +||+.|++||++|++||+ +|++|+|+++||++
T Consensus 101 llpv~~gkp~Le~~i~~l~~~~~----~~G--~~ip~vimts~--~t~e~t~~~f~~~~~fG~---~I~~f~Q~~~P~i~ 169 (469)
T 2icy_A 101 VIEVRDGLTFLDLIVIQIENLNN----KYG--CKVPLVLMNSF--NTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVV 169 (469)
T ss_dssp GSEEETTEEHHHHHHHHHHHHHH----HHS--CCCCEEEEECT--TTHHHHHHHHGGGTTSSS---CEEEEECCCEECEE
T ss_pred ccccCCCCCHHHHHHHHHHHHHH----hcC--CCccEEEEeCC--CCHHHHHHHHHhcccCCc---eEEEEEecceeeEc
Confidence 68895 99999999999999987 678 88999999999 799999999999999998 79999999999999
Q ss_pred cCCCeeeeecC---CCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 80 AEDGQWLVMRP---FAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 80 ~~dg~~~l~~~---~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
+ +|+++++.+ +.++|+|+||||+|++|+++|++++|.++|++|++|+|+||+.+..||.| +|++.++++++.+
T Consensus 170 ~-e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~l---l~~~~~~~a~~t~ 245 (469)
T 2icy_A 170 A-DEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTI---LKHLIQNKNEYCM 245 (469)
T ss_dssp T-TTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHH---HHHHHHHTCSEEE
T ss_pred c-ccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCcccCHHH---HHHHHHcCCCeeE
Confidence 5 689999755 68999999999999999999999999999999999999999766679965 8999999999999
Q ss_pred EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcccc
Q 008919 157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN 235 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~ 235 (548)
++ ++++.+++++|+++. .||+ +.++||+|+|++...+ ..+ ...|+. |||||||++++|+++++. .
T Consensus 246 ~v-~~k~~~~~~~Gvl~~---~dg~----~~vvE~~e~p~~~~~e--~k~---~~~~~~~N~g~y~~~~~~L~~i~~~-~ 311 (469)
T 2icy_A 246 EV-TPKTLADVKGGTLIS---YEGK----VQLLEIAQVPDEHVNE--FKS---IEKFKIFNTNNLWVNLKAIKKLVEA-D 311 (469)
T ss_dssp EE-EECCTTCCSSCEEEE---ETTE----EEEECGGGSCGGGHHH--HHS---SSSCCEEEEEEEEEEHHHHHHHHHT-T
T ss_pred EE-EEeccCCCceeEEEE---ECCE----EEEEEEeccChhhhhh--hcc---ccccceeeEEEEEEcHHHHHHHHhc-c
Confidence 96 677788899999996 6888 8999999999875211 001 125665 999999999999999975 5
Q ss_pred CCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhhhhc
Q 008919 236 ERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRK 315 (548)
Q Consensus 236 ~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~k~~ 315 (548)
...||+|+ ||| ++| | ++++|||++|||++..|.+ +..++++|. +|+||||+. +.
T Consensus 312 ~~~lp~~v-~~K----~id--~----~~~~klE~~~~D~~~~~~~--------~~~~~V~R~-~F~PvKn~~-dl----- 365 (469)
T 2icy_A 312 ALKMEIIP-NPK----EVD--G----VKVLQLETAAGAAIRFFDN--------AIGVNVPRS-RFLPVKASS-DL----- 365 (469)
T ss_dssp CCCCCCBC-CEE----EET--T----EEEECCBCCGGGGGGGSTT--------CEEEECCGG-GCCBCCSHH-HH-----
T ss_pred cCCchhhc-cce----ecC--C----CceEeehHhhHHHHHhcCC--------eEEEEechh-HcCcCCCHH-HH-----
Confidence 67899998 655 555 2 5799999999999988752 233468887 799999952 22
Q ss_pred ccCCCCCCChhhhHHHHHHHHHH-HHHHCCcccCCccCCCccccCCCCeEEEeCCCccccHHHHhcccCC-CccCCCcEE
Q 008919 316 RADMSLHQTPDGSFLDILRNAYD-ILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSEL 393 (548)
Q Consensus 316 ~~~~~~~~tp~s~~~dl~~~~~~-~L~~~g~~v~~~~~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~~~-~si~~~s~L 393 (548)
+..+++ |...+|.-+.. ..+.+++.| +|.|+|. ++++++|.+||++ |||.++++|
T Consensus 366 -----------------l~~~s~l~~~~~g~~~~~---~~~~~~~~P--~v~l~~~-~~~v~~f~~rf~~~p~~~~~~~l 422 (469)
T 2icy_A 366 -----------------LLVQSDLYTLVDGFVTRN---KARTNPSNP--SIELGPE-FKKVATFLSRFKSIPSIVELDSL 422 (469)
T ss_dssp -----------------HHHHSTTEEEETTEEEEC---TTCCSSSCC--EEEECGG-GCSHHHHHHTBSSCCBCTTEEEE
T ss_pred -----------------HHHHHHHHHHhcCcEEec---CcccCCCCC--eEEcChh-hhhHHHHHHhcCCCcccccCCeE
Confidence 222222 33334543322 223466778 5999999 8999999999998 899999999
Q ss_pred EEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcc
Q 008919 394 QIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGES 430 (548)
Q Consensus 394 ~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~ 430 (548)
+|+|+++|++||+|+|+|+|.|.. |.+...|+|..
T Consensus 423 ~v~gdv~fg~~v~l~G~v~i~~~~--~~~~~ip~g~~ 457 (469)
T 2icy_A 423 KVSGDVWFGSSIVLKGKVTVAAKS--GVKLEIPDRAV 457 (469)
T ss_dssp EEESEEEECSSCEEEEEEEEECCT--TCEEEECTTCE
T ss_pred EEEeeeEEcCCcEEEEEEEEEcCC--CCeeecCCCCE
Confidence 999999999999999999999887 88778888873
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=93.96 E-value=0.47 Score=50.80 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=109.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHH-cCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCER-LRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~-~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|+.||+++++.++.+..+ | . --++|.++. -.+..+++|.+ .+.||. +|.+..|.
T Consensus 34 l~pv~gkp~i~~~l~~~~~~--------g--~-~~i~vv~~~---~~~~i~~~~~~~~~~~~~---~i~~~~q~------ 90 (501)
T 3st8_A 34 LHTLAGRSMLSHVLHAIAKL--------A--P-QRLIVVLGH---DHQRIAPLVGELADTLGR---TIDVALQD------ 90 (501)
T ss_dssp GCEETTEEHHHHHHHHHHHH--------C--C-SEEEEEECT---THHHHHHHHHHHHHHHTS---CCEEEECS------
T ss_pred HeEECChhHHHHHHHHHHhC--------C--C-CEEEEEeCC---CHHHHHHHHHHHHHhcCC---cEEEEEcC------
Confidence 78999999999998887643 3 1 246788887 67889999987 345665 56666663
Q ss_pred cCCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
.|-|=|+ |+.++ +.+.+.-...+.+.+.|.++...|. +..++-++...+.++.+.+
T Consensus 91 ----------------~~lGTa~Av~~a~------~~l~~~~~~~~lvl~gd~~l~~~~~-~~~l~~~h~~~~~~~ti~~ 147 (501)
T 3st8_A 91 ----------------RPLGTGHAVLCGL------SALPDDYAGNVVVTSGDTPLLDADT-LADLIATHRAVSAAVTVLT 147 (501)
T ss_dssp ----------------SCCCHHHHHHHHH------TTSCTTCCSEEEEEETTCTTCCHHH-HHHHHHHHHHTTCSEEEEE
T ss_pred ----------------CCCCcHHHHHHHH------HHhccccccceeeecCcceeecHHH-HHHHHHHHhhccccceEee
Confidence 2335444 22222 2233333567888888888876532 2244666677777877775
Q ss_pred EeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhcc
Q 008919 159 CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSS 233 (548)
Q Consensus 159 v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~~ 233 (548)
.+...|. +-|++.. ..+|+ ....+|--+.+++.. . ..-.|+..++|+-+.|++.+.+
T Consensus 148 -~~~~dp~-~yG~i~~--~~~g~---v~~ivEk~~~~~~~~----------~-i~~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 148 -TTLDDPF-GYGRILR--TQDHE---VMAIVEQTDATPSQR----------E-IREVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp -EECSCCT-TSCEEEE--CTTCC---EEEEECGGGCCHHHH----------H-CCEEEEEEEEEEHHHHHHHHTT
T ss_pred -eccCCch-hcccccc--cccee---EEeeccccCCChhhc----------c-ceeeeceeeeecchhHHHhhhh
Confidence 4443343 5667765 36676 356778776666531 0 1114999999999999988754
No 11
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=86.62 E-value=3 Score=40.30 Aligned_cols=170 Identities=9% Similarity=0.059 Sum_probs=95.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.||++++..++++... | + -.++|-|.. +.+.+++++ ||. ++.+ .
T Consensus 21 L~~i~GkPli~~~l~~l~~~--------~--~-~~ivVv~~~-----~~i~~~~~~---~g~---~v~~---------~- 68 (252)
T 3oam_A 21 LADIGGKPMIQWVYEQAMQA--------G--A-DRVIIATDD-----ERVEQAVQA---FGG---VVCM---------T- 68 (252)
T ss_dssp GCEETTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHHHHHHH---TTC---EEEE---------C-
T ss_pred eeeECCEEHHHHHHHHHHhC--------C--C-CeEEEECCH-----HHHHHHHHH---cCC---EEEE---------c-
Confidence 68899999999999887642 3 2 245666632 788888875 443 1111 1
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
. .-.|.|-|.++.++.. +...+-.++.+.+.|+++...+ .+-.++..+...+.++.+.++
T Consensus 69 ~------------~~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli~~~-~i~~l~~~~~~~~~~~~~~~~- 128 (252)
T 3oam_A 69 S------------PNHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLIPPA-IIRQVADNLAACSAPMATLAV- 128 (252)
T ss_dssp C------------TTCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTCCHH-HHHHHHHHHHHSSCSEEEEEE-
T ss_pred C------------CCCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeecCHH-HHHHHHHHHHhcCCCEEEEee-
Confidence 0 1235666777766532 2112467999999999987642 122335555555667766652
Q ss_pred ccCCCC----ccceEEEEEecCCCceecceeEEEecc--cCccccCCCCCCC-CCcccccccceeeEEEeHHHHHhhhc
Q 008919 161 RSSGAT----EGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPFSS-NGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 161 rK~~~~----e~vGvL~~~~~~dG~~~~~~~vVEYse--l~~~~~~~~~~~~-g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+-..+. ..+|+++. ..+|+ ++.+++ +|.. ++..... ...-..+-.|+....|+-++|++..+
T Consensus 129 ~v~~~~~~~~p~~g~vv~--d~~g~------v~~fsr~~i~~~--~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 129 EIEDEAEVFNPNAVKVIT--DKSGY------ALYFSRATIPWD--RDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp EECCHHHHTCTTSCEEEE--CTTSB------EEEEESSCSSCC--HHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHH
T ss_pred ecCCHHHhhCCCceEEEE--CCCCe------EEEEeCCCCCCC--CCccccccccccccceEEEEEEEcCHHHHHHHHc
Confidence 322222 13366654 25665 445555 3321 1000000 00000233499999999999998764
No 12
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=83.36 E-value=26 Score=36.12 Aligned_cols=180 Identities=10% Similarity=0.056 Sum_probs=94.4
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+.|+ ++++..++++.+. | . -.++|.|.. .++...+++++. +|+... +.+..++.+.
T Consensus 37 llpi~gk~pli~~~l~~l~~~--------g--i-~~i~vv~~~---~~~~i~~~~~~~--~~~~~~----~~~~~v~i~~ 96 (420)
T 3brk_X 37 AVYFGGKARIIDFALSNALNS--------G--I-RRIGVATQY---KAHSLIRHLQRG--WDFFRP----ERNESFDILP 96 (420)
T ss_dssp GSEETTTEETHHHHHHHHHHT--------T--C-CEEEEEECT---TCHHHHHHHHHH--SCCCCG----GGTCEEEEEC
T ss_pred ccccCCCCcHHHHHHHHHHhC--------C--C-CeEEEEeCC---ChHHHHHHHhhh--hccccc----cccCCEEEeC
Confidence 6899999 9999998887642 3 1 146788876 568888888874 454310 1122222221
Q ss_pred cCCCeeeeecCCCCcccc---CCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 80 AEDGQWLVMRPFAPVCKP---GGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P---~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
.. .-...| -|-++ +++. .++.+...+-+++.+.+.|.+ ...| +-.++..+...+.++.+
T Consensus 97 ~~----------~~~~~~~~~~Gt~~---al~~--a~~~l~~~~~~~~lv~~~D~~-~~~~--l~~l~~~~~~~~~~~tl 158 (420)
T 3brk_X 97 AS----------QRVSETQWYEGTAD---AVYQ--NIDIIEPYAPEYMVILAGDHI-YKMD--YEYMLQQHVDSGADVTI 158 (420)
T ss_dssp CC-----------------CCCCHHH---HHHT--THHHHHHHCCSEEEEEESSCE-ECBC--THHHHHHHHHTTCSEEE
T ss_pred cc----------ccccCCccccCCHH---HHHH--HHHHHHhcCCCEEEEecccEE-EchH--HHHHHHHHHHcCCeEEE
Confidence 00 000012 23322 2221 134444434578999999994 3333 33446666666777665
Q ss_pred EEEeccC-CCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 157 ASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 157 ~~v~rK~-~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+ .+.+ ....+-|++.. ..+|+ ++++.|=|... . .. .+.. ..+-.|+...+|+-+.+.+.++
T Consensus 159 ~~-~~~~~~~~~~~g~v~~--d~~g~------v~~~~ekp~~~-~-~~-~~~~--~~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 159 GC-LEVPRMEATGFGVMHV--NEKDE------IIDFIEKPADP-P-GI-PGNE--GFALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp EE-EEEETTGGGGSEEEEE--CTTSB------EEEEEESCSSC-C-CB-TTBT--TEEEEEEEEEEEEHHHHHHHHT
T ss_pred EE-eecCccccCcccEEEE--CCCCc------EEEeEeCCCcc-c-cc-cccc--cceEEeeeeEEEeHHHHHHHHH
Confidence 54 3321 12235677654 23555 33344323221 0 00 0000 1233499999999998877664
No 13
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=82.11 E-value=12 Score=36.10 Aligned_cols=156 Identities=18% Similarity=0.099 Sum_probs=88.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+. | + -.++|.|.. +..+...+++.....+|+ ++.+..|.
T Consensus 49 ll~i~g~pli~~~l~~l~~~--------g--~-~~iivv~~~--~~~~~~~~~~~~~~~~~~---~i~~~~~~------- 105 (269)
T 4ecm_A 49 LLPVGRYPMIYHAVYKLKQC--------D--I-TDIMIITGK--EHMGDVVSFLGSGQEFGV---SFTYRVQD------- 105 (269)
T ss_dssp GSEETTEEHHHHHHHHHHHT--------T--C-CEEEEEECT--TTHHHHHHHHTTSGGGTC---EEEEEECS-------
T ss_pred ecEECCEEHHHHHHHHHHHC--------C--C-CEEEEECCh--hhHHHHHHHHhhccccCc---eEEEeeCC-------
Confidence 68999999999999987542 3 1 256777776 234677888876555554 22221110
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
.+.|-|+. ++. .++.+. -+++.|.+.|.+.. . .+-.++..+...+.++.+.+ .
T Consensus 106 ---------------~~~G~~~a---l~~--a~~~~~---~~~~lv~~~D~~~~-~--~l~~l~~~~~~~~~~~~~~~-~ 158 (269)
T 4ecm_A 106 ---------------KAGGIAQA---LGL--CEDFVG---NDRMVVILGDNIFS-D--DIRPYVEEFTNQKEGAKVLL-Q 158 (269)
T ss_dssp ---------------SCCCHHHH---HHT--THHHHT---TSEEEEEETTEEES-S--CSHHHHHHHHTSSSSEEEEE-E
T ss_pred ---------------ccCcHHHH---HHH--HHHhcC---CCcEEEEeCCccCc-c--CHHHHHHHHHhcCCCeEEEE-E
Confidence 13344332 221 122232 47899999999764 3 23344566666677766664 3
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHH
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAE 228 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~ 228 (548)
+... ...-|++.. .+|+ ++++.|=|.. . . .+..|++..+|+-+.++
T Consensus 159 ~~~~-~~~~g~v~~---d~g~------v~~~~ekp~~-------~--~---~~~~~~Giy~~~~~~l~ 204 (269)
T 4ecm_A 159 SVDD-PERFGVANI---QNRK------IIEIEEKPKE-------P--K---SSYAVTGIYLYDSKVFS 204 (269)
T ss_dssp ECSC-GGGSEEEEE---ETTE------EEEEEESCSS-------C--S---CSEEEEEEEEECTTHHH
T ss_pred ECCC-CCCceEEEE---cCCE------EEEEEECCCC-------C--C---CcEEEEEEEEECHHHHH
Confidence 3322 335677754 3465 3333332211 0 0 23359999999987764
No 14
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=76.45 E-value=58 Score=31.58 Aligned_cols=171 Identities=14% Similarity=0.087 Sum_probs=90.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.||++++..++++++. | + -.++|-|.. +.+.+++++ ||. ++. +.
T Consensus 28 L~~i~GkPli~~~l~~l~~~--------~--i-~~VvVvt~~-----~~i~~~~~~---~g~---~v~---------~~- 75 (256)
T 3tqd_A 28 LVDIAGKPMIQHVYESAIKS--------G--A-EEVVIATDD-----KRIRQVAED---FGA---VVC---------MT- 75 (256)
T ss_dssp GCEETTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHHHHHHH---TTC---EEE---------EC-
T ss_pred eeeECCchHHHHHHHHHHhC--------C--C-CEEEEECCH-----HHHHHHHHH---cCC---eEE---------Ee-
Confidence 68899999999999887642 3 1 134555643 778888875 443 111 11
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhc-CCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH-GKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~-~~~~~~~~v 159 (548)
. .-.|.|-+.++.++.. +...+.+++.+.+.|+++...+ .+-.++..+... +.++...++
T Consensus 76 ~------------~~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli~~~-~i~~li~~~~~~~~~~~a~l~~ 136 (256)
T 3tqd_A 76 S------------SDHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLIPPD-AIRKLAEDLDEHDNVKVASLCT 136 (256)
T ss_dssp C------------TTCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCCCHH-HHHHHHHHHHHCC--CEEEEEE
T ss_pred C------------CCCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccCCHH-HHHHHHHHHHhCCCCCEEEEee
Confidence 0 1135566667766532 2123568999999999997641 111224444432 445555542
Q ss_pred eccCC----CCc-cceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCC--cccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSSG----ATE-GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG--LQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~----~~e-~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~--l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+-.. .+. -++|++. .+|+ .+.+++=|.-...+....... .-..|-.|+....|+-++|++..+
T Consensus 137 -~v~~~~~~~~p~~vkvv~d---~~g~------~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 137 -PITEVDELFNPHSTKVVLN---RRNY------ALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLS 206 (256)
T ss_dssp -ECCCHHHHTCTTSCEEEEC---TTSB------EEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred -EcCCHHHhhCCCccEEEEC---CCCE------EeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence 2111 111 2566653 6776 344555332110110000000 001233499999999999998754
No 15
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=74.18 E-value=45 Score=34.50 Aligned_cols=188 Identities=10% Similarity=0.100 Sum_probs=95.1
Q ss_pred CCCCCCC-chhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCce-EEEecCceeEE
Q 008919 1 MLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSF-QLFEQPLVPAV 78 (548)
Q Consensus 1 ~Lpvsgk-sllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV-~~F~Q~~vP~l 78 (548)
|||+.|+ ++++..++++.+. | . -.++|.|+. .++...++|.+. +|. ++ .++.++.+..+
T Consensus 45 llpi~g~~pli~~~l~~l~~~--------g--~-~~i~vv~~~---~~~~i~~~~~~~--~~~---~~~~~~~~~~v~i~ 105 (451)
T 1yp2_A 45 AVPLGANYRLIDIPVSNCLNS--------N--I-SKIYVLTQF---NSASLNRHLSRA--YAS---NMGGYKNEGFVEVL 105 (451)
T ss_dssp GCEETTTEETTHHHHHHHHHT--------T--C-CEEEEEESC---CCHHHHHHHHHH--CC-----------CCEEEEE
T ss_pred eeEECCcceeHHHHHHHHHHC--------C--C-CEEEEEecc---CHHHHHHHHhhh--hhc---ccccccccCcEEEe
Confidence 6899999 9999998887642 3 1 257888876 567888888752 221 11 11233333333
Q ss_pred ecCCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEE
Q 008919 79 DAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFA 157 (548)
Q Consensus 79 ~~~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~ 157 (548)
.... .+ .-...+-|-|+ ++.+ ++.+...+-+++.|.+.|.+ ...| +-.++..+...+.++.+.
T Consensus 106 ~~~~------~~-~~~~~~~Gt~~al~~a------~~~~~~~~~~~~lv~~~D~~-~~~~--l~~l~~~~~~~~~~~tl~ 169 (451)
T 1yp2_A 106 AAQQ------SP-ENPDWFQGTADAVRQY------LWLFEEHTVLEYLILAGDHL-YRMD--YEKFIQAHRETDADITVA 169 (451)
T ss_dssp ESCS------ST-TSCCCCCSHHHHHHHT------HHHHTTSCCSEEEEECSCEE-CCCC--HHHHHHHHHHTTCSEEEE
T ss_pred cccc------cc-cccccccCcHHHHHHH------HHHHHhcCCCeEEEecCcEE-EcCC--HHHHHHHHHHcCCcEEEE
Confidence 2110 00 00111334433 2222 23343335689999999993 3333 334566666667776655
Q ss_pred EEeccC-CCCccceEEEEEecCCCceecceeEEEecccCccccCC-CCCCCCCcc---------cccccceeeEEEeHHH
Q 008919 158 SCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR-GPFSSNGLQ---------ADFPANTNILYVDLAS 226 (548)
Q Consensus 158 ~v~rK~-~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~-~~~~~g~l~---------s~f~~Ninnl~~~L~~ 226 (548)
+ .+.. .+..+-|++.. ..+|+ ++++.|=|....+. -..+ .+++ ..+-.|+..++|+-+.
T Consensus 170 ~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~Giy~~~~~~ 239 (451)
T 1yp2_A 170 A-LPMDEKRATAFGLMKI--DEEGR------IIEFAEKPQGEQLQAMKVD-TTILGLDDKRAKEMPFIASMGIYVISKDV 239 (451)
T ss_dssp E-EEECHHHHTTSEEEEE--CTTSB------EEEEEESCCHHHHHHTCCC-GGGGSCCHHHHHHCCEEEEEEEEEEEHHH
T ss_pred E-EEcChhhcccCCEEEE--CCCCC------EEEEEECCCchhhcccccc-ccccccccccccCCcceEEeeEEEEcHHH
Confidence 3 2221 11234566654 23454 44444433321000 0000 0000 0233499999999998
Q ss_pred HHhhhcc
Q 008919 227 AELVGSS 233 (548)
Q Consensus 227 l~~~l~~ 233 (548)
+.+.++.
T Consensus 240 l~~~l~~ 246 (451)
T 1yp2_A 240 MLNLLRD 246 (451)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8777653
No 16
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=71.16 E-value=50 Score=31.95 Aligned_cols=169 Identities=10% Similarity=0.096 Sum_probs=88.5
Q ss_pred CCCCCCCchhHHHH-HHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPYCGRTLLEGLI-RDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpvsgksllql~~-e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|+|+.||++++..+ +++++ .+ + -.+++-|.+ +.+.+++++ ||.. +. + .
T Consensus 20 L~~i~GkPli~~~i~~~~~~--------~~--~-~~vvVvt~~-----~~i~~~~~~---~g~~---v~-~--------~ 68 (253)
T 4fcu_A 20 LLLIHDRPMILRVVDQAKKV--------EG--F-DDLCVATDD-----ERIAEICRA---EGVD---VV-L--------T 68 (253)
T ss_dssp GSEETTEEHHHHHHHHHHTC--------TT--C-CEEEEEESC-----HHHHHHHHT---TTCC---EE-E--------C
T ss_pred eeeECCeEhHHHHHHHHHHh--------cC--C-CEEEEECCH-----HHHHHHHHH---cCCe---EE-E--------e
Confidence 67899999999998 77642 12 1 145666643 677777764 3431 11 0 1
Q ss_pred cCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhc-CCceeEEE
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH-GKKLGFAS 158 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~-~~~~~~~~ 158 (548)
.. -.|.|-+.++.++. .+...+..++.+.+.|+++...+ .+-.++..+... +..+...+
T Consensus 69 ~~-------------~~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~Pli~~~-~i~~li~~~~~~~~~~~at~~ 128 (253)
T 4fcu_A 69 SA-------------DHPSGTDRLSEVAR------IKGWDADDIIVNVQGDEPLLPAQ-LVQQVAKLLVDKPNCSMSTLC 128 (253)
T ss_dssp CT-------------TCCCHHHHHHHHHH------HHTCCTTCEEEECCTTCTTCCHH-HHHHHHHHHHHCTTCSEEEEE
T ss_pred CC-------------CCCChHHHHHHHHH------hcCcCCCCEEEEEeCCcccCCHH-HHHHHHHHHHhCCCCCEEEEe
Confidence 01 01334444555543 33223568999999999998642 111234444443 33454443
Q ss_pred Eec-----cCCCCccceEEEEEecCCCceecceeEEEecc--cCccccCCCCCCCC-CcccccccceeeEEEeHHHHHhh
Q 008919 159 CKR-----SSGATEGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPFSSN-GLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 159 v~r-----K~~~~e~vGvL~~~~~~dG~~~~~~~vVEYse--l~~~~~~~~~~~~g-~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
++- -..|. .+++++. .+|+ .. -+++ +|.. .+....+. +.-..|-.|+....|+-++|++.
T Consensus 129 ~~~~~~~~~~~p~-~~kvv~d---~~g~----~l--~fsr~~ip~~--r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~ 196 (253)
T 4fcu_A 129 EPIHALDEFQRDS-IVKVVMS---KQNE----AL--YFSRATIPYD--RDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEY 196 (253)
T ss_dssp EECCCHHHHHCTT-SCEEEEC---TTSB----EE--EEESSCCSCC--TTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHH
T ss_pred EEcCCHHHccCCC-ccEEEEC---CCCe----EE--EecCCCCCCC--CCcccccccccccceeEEEEEEEeCHHHHHHH
Confidence 221 12233 2556543 6776 33 3344 4432 11100000 00012334999999999999987
Q ss_pred hc
Q 008919 231 GS 232 (548)
Q Consensus 231 l~ 232 (548)
.+
T Consensus 197 ~~ 198 (253)
T 4fcu_A 197 VT 198 (253)
T ss_dssp TT
T ss_pred Hh
Confidence 63
No 17
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=69.15 E-value=35 Score=33.34 Aligned_cols=171 Identities=8% Similarity=0.057 Sum_probs=94.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.||++++..++++.+. | + -.++|-|.. +...+++++ ||. ++. +.
T Consensus 37 L~~i~GkPmi~~~l~~l~~~--------~--i-~~IvV~t~~-----~~i~~~~~~---~g~---~v~---------~~- 84 (264)
T 3k8d_A 37 LVDINGKPMIVHVLERARES--------G--A-ERIIVATDH-----EDVARAVEA---AGG---EVC---------MT- 84 (264)
T ss_dssp GCEETTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHHHHHHH---TTC---EEE---------EC-
T ss_pred eeeECCeEHHHHHHHHHHhC--------C--C-CEEEEECCH-----HHHHHHHHH---cCC---EEE---------Ee-
Confidence 67899999999998887532 3 2 245666643 677777775 343 111 11
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
. ...|.|-|.+..++.. +...+-+++.+.+.|+++...+ .+-.++......++++.+.++
T Consensus 85 ~------------~~~~~Gt~~i~~~~~~------l~~~~~d~vlv~~gD~Pli~~~-~i~~li~~~~~~~~~~~~~~~- 144 (264)
T 3k8d_A 85 R------------ADHQSGTERLAEVVEK------CAFSDDTVIVNVQGDEPMIPAT-IIRQVADNLAQRQVGMATLAV- 144 (264)
T ss_dssp C------------TTCCSHHHHHHHHHHH------HTCCTTCEEEEECTTCTTCCHH-HHHHHHHHHHTSSCSEEEEEE-
T ss_pred c------------CCCCCCHHHHHHHHHH------hccCCCCEEEEEcCCcccCCHH-HHHHHHHHHhhcCCCEEEEEE-
Confidence 0 0134566666666532 2223568999999999997642 121334555556677776653
Q ss_pred ccCCCC----cc-ceEEEEEecCCCceecceeEEEecccCccccCCCC-CCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 161 RSSGAT----EG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP-FSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 161 rK~~~~----e~-vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~-~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
+-..++ -+ ++++.. .+|+ ++.+++=|.-...+.. ....+.-..|-.|+....|+-+++++...
T Consensus 145 ~v~d~~~~~~p~~vkVv~d---~~g~------~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 145 PIHNAEEAFNPNAVKVVLD---AEGY------ALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp ECCSHHHHTCTTSCEEEEC---TTSB------EEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred EcCCHHHccCCCceEEEEC---CCCe------EEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHh
Confidence 222211 11 455543 5675 4555654321000000 00001101244599999999999998753
No 18
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=68.39 E-value=42 Score=32.27 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=32.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHc
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERL 57 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~ 57 (548)
|||+.|+++++..++++... | + -.++|.|+. ..+...++|.+.
T Consensus 27 ll~i~gkpli~~~l~~l~~~--------g--i-~~i~vv~~~---~~~~i~~~~~~~ 69 (281)
T 3juk_A 27 MLPIVDKPLIQYAVEEAMEA--------G--C-EVMAIVTGR---NKRSLEDYFDTS 69 (281)
T ss_dssp GCBSSSSBHHHHHHHHHHHH--------T--C-CEEEEEECT---THHHHHHHTSCC
T ss_pred cceECCEEHHHHHHHHHHhC--------C--C-CEEEEEecC---CHHHHHHHHhcc
Confidence 68999999999999988653 3 1 257788876 667888887653
No 19
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=67.69 E-value=86 Score=30.74 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.||++++..++.+.. .| +. .++|.|+. ...+...+++.+...||+ ++.+..|+
T Consensus 27 llpi~gkpli~~~l~~l~~--------~g--i~-~I~vv~~~--~~~~~i~~~l~~g~~~g~---~i~~~~~~------- 83 (293)
T 1fxo_A 27 LLPVYDKPMIYYPLSTLML--------AG--IR-EILIISTP--QDTPRFQQLLGDGSNWGL---DLQYAVQP------- 83 (293)
T ss_dssp GSEETTEETTHHHHHHHHH--------TT--CC-EEEEEECT--TTHHHHHHHHTTSGGGTC---EEEEEECS-------
T ss_pred eCeECCEeHHHHHHHHHHH--------CC--CC-EEEEEecc--ccHHHHHHHHhcccccCc---eEEEeeCC-------
Confidence 6899999999999887753 23 21 45666655 356677788776444554 22221111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
.|.|-++.+... ++.+ . + ..+.+...||++... .+-.++..+...+.+..+.+ .
T Consensus 84 ---------------~~~G~~~al~~a-----~~~i-~-~-~~~~lv~gD~~~~~~--~l~~~l~~~~~~~~~~~v~~-~ 137 (293)
T 1fxo_A 84 ---------------SPDGLAQAFLIG-----ESFI-G-N-DLSALVLGDNLYYGH--DFHELLGSASQRQTGASVFA-Y 137 (293)
T ss_dssp ---------------SCCCGGGHHHHT-----HHHH-T-T-SEEEEEETTEEEECT--THHHHHHHHHTCCSSEEEEE-E
T ss_pred ---------------CCCCHHHHHHHH-----HHHh-C-C-CCEEEEECChhccCc--cHHHHHHHHHhcCCCcEEEE-E
Confidence 255655533321 1222 1 1 445556699998653 33334555444444544433 3
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhh
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
+... .++-|++.. ..+|+ + +++.|-|... . .+..|+...+|+-+.+..+
T Consensus 138 ~v~d-p~~~g~v~~--d~~g~----v--~~~~ekp~~~---------~---s~~~~~Giy~~~~~~l~~~ 186 (293)
T 1fxo_A 138 HVLD-PERYGVVEF--DQGGK----A--ISLEEKPLEP---------K---SNYAVTGLYFYDQQVVDIA 186 (293)
T ss_dssp ECSC-GGGSEEEEE--CTTSC----E--EEEEESCSSC---------S---SSEEEEEEEEECTTHHHHH
T ss_pred ECCC-cccCcEEEE--CCCCc----E--EEEEECCCCC---------C---CCeEEEEEEEEcHHHHHHH
Confidence 3322 346777754 24565 3 2333322210 1 1235999999998876544
No 20
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=67.05 E-value=41 Score=33.21 Aligned_cols=170 Identities=8% Similarity=-0.060 Sum_probs=87.3
Q ss_pred CCCC-CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEe
Q 008919 1 MLPY-CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 79 (548)
Q Consensus 1 ~Lpv-sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 79 (548)
|||+ .|+++++..++++... - -.++|.|+. ...+.+.+++++. ||++ ++.+..|
T Consensus 30 ll~i~gg~pli~~~l~~l~~~-~-----------~~i~vv~~~--~~~~~i~~~~~~~--~~~~--~~~~i~~------- 84 (308)
T 2qh5_A 30 FLKLFDHKSLFELSFKRNASL-V-----------DETLIVCNE--KHYFLALEEIKNE--IKNK--SVGFLLE------- 84 (308)
T ss_dssp GCTTBTTBCHHHHHHHHHHTT-C-----------SEEEEEEEG--GGHHHHHHHTTTT--CSSC--EEEEEEE-------
T ss_pred EEECCCCCCHHHHHHHHHHcc-C-----------CCEEEEECh--hHHHHHHHHHHHh--hCCC--ccEEEeC-------
Confidence 6899 5999999998887643 1 256788876 2345677777653 4432 2222111
Q ss_pred cCCCeeeeecCCCCccccCCCchH-hHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhh---hhhcCCcee
Q 008919 80 AEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGI---GLHHGKKLG 155 (548)
Q Consensus 80 ~~dg~~~l~~~~~l~~~P~GHGdI-y~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~---~~~~~~~~~ 155 (548)
. .|-|-|+. +.++. .+ ..-.++.|.+.|.+....| .|-.++.. ....+..+.
T Consensus 85 ---------~------~~~gt~~al~~a~~------~l--~~~~~~lv~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~t 140 (308)
T 2qh5_A 85 ---------S------LSKNTANAIALSAL------MS--DKEDLLIVTPSDHLIKDLQ-AYENAIKKAIDLAQKGFLVT 140 (308)
T ss_dssp ---------S------SCCCHHHHHHHHHH------TS--CTTSEEEEEESSCBCCCHH-HHHHHHHHHHHHHHTTCEEE
T ss_pred ---------C------CCCChHHHHHHHHH------Hh--CCCCeEEEEcCCccccCHH-HHHHHHHHHHHHHhcCCEEE
Confidence 0 13354444 33331 11 1234789999999875432 13233443 334454444
Q ss_pred EEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhcc
Q 008919 156 FASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSS 233 (548)
Q Consensus 156 ~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~~ 233 (548)
+.+ .+ ..+..+-|++.. ..+|+ ++++.|=|....+..-..+| .|-.|+..++|+-+.+.+.+++
T Consensus 141 ~~~-~~-~~~~~~~g~i~~--d~~~~------V~~~~Ekp~~~~~~~~~~~g----~~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 141 FGV-SI-DKPNTEFGYIES--PNGLD------VKRFIEKPSLDKAIEFQKSG----GFYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp EEE-EC-SSCCTTSEEEEC--SSSSB------CSEEEESCCHHHHHHHHHHC----CEEEEEEEEEEEHHHHHHHHHH
T ss_pred EEE-ec-CCCCCCceEEEE--CCCCE------EEEEEECCChHHHHHHhhcC----CeEEEeEEEEEEHHHHHHHHHH
Confidence 443 33 334446777743 12344 22333322221000000001 2445999999998887665543
No 21
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=64.58 E-value=19 Score=32.50 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=43.0
Q ss_pred EEeeCcEeeeeCCCcccccc--------ceeeeE---EEEEEeccceeEee----------ceeEecCeEEEecCCeEEE
Q 008919 447 KVLNKGIDWDCGDNTYWKHD--------VQWFEA---LKVILHGNAEFEAS----------DVTLQGNHVFEVPDGHKLK 505 (548)
Q Consensus 447 ~V~N~G~~~~~~~~~~w~~~--------~~r~e~---~~i~~~g~~~f~a~----------~v~~~g~~~~~vp~g~~~~ 505 (548)
.+.|.||....+. |+.+ +++|+- +=|+|+|....+.+ .|+++=..+|+||-|..=+
T Consensus 19 ~~~~~~W~Va~~n---~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~ 95 (140)
T 3d0j_A 19 VYKNEKWLVCIKN---WKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFY 95 (140)
T ss_dssp EEECSSEEEEEEE---CCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEE
T ss_pred EEEcCCEEEEEEe---ccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCc
Confidence 4569999988654 4433 455542 45778888776666 6999999999999998776
Q ss_pred EeeC
Q 008919 506 ITSG 509 (548)
Q Consensus 506 ~~~~ 509 (548)
-+..
T Consensus 96 p~a~ 99 (140)
T 3d0j_A 96 SITQ 99 (140)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 4443
No 22
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=58.97 E-value=72 Score=32.75 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=83.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+. | . -.++|.|+. .++...+++++. .+.+..|.
T Consensus 30 l~~i~g~pli~~~l~~l~~~--------~--~-~~i~vv~~~---~~~~i~~~~~~~--------~~~~v~~~------- 80 (459)
T 4fce_A 30 LHPLAGKPMVQHVIDAAMKL--------G--A-QHVHLVYGH---GGELLKKTLADP--------SLNWVLQA------- 80 (459)
T ss_dssp GSEETTEEHHHHHHHHHHHH--------T--C-SCEEEEESS---CHHHHHHHC-------------CEEECS-------
T ss_pred cCeeCCeeHHHHHHHHHHhC--------C--C-CcEEEEeCC---CHHHHHHHhccC--------CcEEEeCC-------
Confidence 68999999999999887643 2 1 257888887 467777776642 11111110
Q ss_pred CCCeeeeecCCCCccccCCC-chHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGH-GAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GH-GdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
.+-|- +.++.+|.. +. .-+++++.+.|.++...+ .+-.++.... ..+....+
T Consensus 81 ---------------~~~g~~~~i~~~~~~------~~--~~~~~lv~~~D~P~i~~~-~i~~l~~~~~--~~~~~~~~- 133 (459)
T 4fce_A 81 ---------------EQLGTGHAMQQAAPH------FA--DDEDILMLYGDVPLISVD-TLQRLLAAKP--EGGIGLLT- 133 (459)
T ss_dssp ---------------SCCCHHHHHHHHGGG------SC--TTSEEEEEETTCTTCCHH-HHHHHHHHCC--TTSEEEEE-
T ss_pred ---------------CCCCcHHHHHHHHHh------cC--CCCcEEEEeCCcccCCHH-HHHHHHHHHh--hCCEEEEE-
Confidence 12232 234444422 21 357999999999887641 1112233222 24444443
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhcc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSS 233 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~~ 233 (548)
.+...+ .+-|++.. .+|+ +.++.+=++.. .. ... .+-.|+...+|+-+.+.+.++.
T Consensus 134 ~~~~~~-~~~g~v~~---~~g~------v~~~~ek~~~~-----~~--~~~-~~~~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 134 VKLDNP-SGYGRIVR---ENGD------VVGIVEHKDAS-----DA--QRE-INEINTGILVANGRDLKRWLSL 189 (459)
T ss_dssp EECSCC-TTSCEEEE---ETTE------EEEEECGGGCC-----TT--GGG-CCEEEEEEEEEEHHHHHHHHHT
T ss_pred EecCCC-CcccEEEe---CCCc------EEEEEECCCCC-----hH--Hhh-ccEEEEEEEEEEHHHHHHHHHH
Confidence 332222 34566654 3565 33333322211 00 000 1224999999999998877653
No 23
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=46.72 E-value=1.1e+02 Score=31.33 Aligned_cols=158 Identities=13% Similarity=0.143 Sum_probs=81.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++... | . -.++|.|+. ..+...+++.+. .+.+..|
T Consensus 27 l~~i~gkpli~~~l~~l~~~--------~--~-~~iivv~~~---~~~~i~~~~~~~--------~~~~v~~-------- 76 (456)
T 2v0h_A 27 LHTIAGKPMVKHVIDTAHQL--------G--S-ENIHLIYGH---GGDLMRTHLANE--------QVNWVLQ-------- 76 (456)
T ss_dssp GSEETTEEHHHHHHHHHHHT--------T--C-SCEEEEECT---THHHHHHHTTTC--------CCEEEEC--------
T ss_pred ccEECCccHHHHHHHHHHhC--------C--C-CcEEEEeCC---CHHHHHHHhhcC--------CcEEEeC--------
Confidence 68999999999998887642 2 1 146777776 455666665432 1222111
Q ss_pred CCCeeeeecCCCCccccCCCc-hHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHG-dIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
+ .+-|-+ .++.++. .+. .-+++++.+.|.++...+ .+-.++..... .++...+
T Consensus 77 --------~------~~~g~~~~~~~~~~------~~~--~~~~vlv~~~D~P~i~~~-~i~~l~~~~~~--~~~~~~~- 130 (456)
T 2v0h_A 77 --------T------EQLGTAHAVQQAAP------FFK--DNENIVVLYGDAPLITKE-TLEKLIEAKPE--NGIALLT- 130 (456)
T ss_dssp --------S------CCCCHHHHHHHHGG------GCC--TTSEEEEEETTCTTCCHH-HHHHHHHHCCT--TSEEEEE-
T ss_pred --------C------CCCCcHHHHHHHHH------hcC--CCCeEEEEcCCcceeCHH-HHHHHHHHHhc--CCEEEEE-
Confidence 0 122322 3333332 221 157999999999987641 12122333222 3444433
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+...+ .+-|.+.. .+|+ ....+|.....+.. ...+..|+..+.|+-+.+.+.++
T Consensus 131 ~~~~~~-~~~g~v~~---~~g~---v~~~~ek~~~~~~~-----------~~~~~~~~Giy~~~~~~l~~~l~ 185 (456)
T 2v0h_A 131 VNLDNP-TGYGRIIR---ENGN---VVAIVEQKDANAEQ-----------LNIKEVNTGVMVSDGASFKKWLA 185 (456)
T ss_dssp EECSSC-TTSCEEEE---ETTE---EEEEECTTTCCHHH-----------HTCCEEEEEEEEEEHHHHHHHHT
T ss_pred eecCCC-CccceEEE---cCCc---EEEEEECCCCChhH-----------hcCcEEEEEEEEEEHHHHHHHHH
Confidence 232222 33455543 2554 12233332221110 00233499999999988877764
No 24
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=46.67 E-value=1.1e+02 Score=31.45 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=84.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+ .| . -.++|.|+. ..+...+++++ .+.+ +.
T Consensus 33 l~~i~gkpli~~~l~~l~~--------~g--~-~~iivv~~~---~~~~i~~~~~~---------~i~~--------v~- 80 (468)
T 1hm9_A 33 LHKVAGISMLEHVFRSVGA--------IQ--P-EKTVTVVGH---KAELVEEVLAG---------QTEF--------VT- 80 (468)
T ss_dssp GSEETTEEHHHHHHHHHHT--------TC--C-SEEEEEECT---THHHHHHSSSS---------SSEE--------EE-
T ss_pred eeEECCccHHHHHHHHHHh--------cC--C-CCEEEEECC---CHHHHHHHhCC---------CcEE--------Ee-
Confidence 6899999999998887753 23 1 256777776 34444443322 1222 21
Q ss_pred CCCeeeeecCCCCccccCCCch-HhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGd-Iy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v 159 (548)
+ . .+-|-++ ++.++ +.+. ..-+++++.+.|.++...+ .+-.++..+...+.++.+.+
T Consensus 81 ~-------~------~~~G~~~sl~~a~------~~~~-~~~~~vlv~~~D~P~i~~~-~i~~l~~~~~~~~~~~~i~~- 138 (468)
T 1hm9_A 81 Q-------S------EQLGTGHAVMMTE------PILE-GLSGHTLVIAGDTPLITGE-SLKNLIDFHINHKNVATILT- 138 (468)
T ss_dssp C-------S------SCCCHHHHHHTTH------HHHT-TCCSEEEEEETTCTTCCHH-HHHHHHHHHHHTTCSEEEEE-
T ss_pred C-------C------ccCChHHHHHHHH------HHhc-cCCCeEEEEeCCccccCHH-HHHHHHHHHHhcCCcEEEEE-
Confidence 1 0 1223332 23222 3332 2247899999999976641 12233555555666666554
Q ss_pred eccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhhc
Q 008919 160 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGS 232 (548)
Q Consensus 160 ~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l~ 232 (548)
.+... ...-|.+.. ..+|+ ++++.|=+... .+ . ...+..|+...+|+-+.|.+.+.
T Consensus 139 ~~~~~-~~~~g~v~~--d~~g~------v~~~~ek~~~~------~~-~-~~~~~~~~Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 139 AETDN-PFGYGRIVR--NDNAE------VLRIVEQKDAT------DF-E-KQIKEINTGTYVFDNERLFEALK 194 (468)
T ss_dssp EECSC-CTTSCEEEE--CTTCC------EEEEECTTTCC------TT-G-GGCCEEEEEEEEEEHHHHHHHHT
T ss_pred eccCC-CCceeEEEE--CCCCC------EEEEEECCCCC------hH-H-hcCeEEEEEEEEEEHHHHHHHHH
Confidence 33322 234566543 23454 33443322210 00 0 01233499999999998877664
No 25
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=45.18 E-value=1.1e+02 Score=28.25 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++++. + .--.+++-|.. +...+++++ +|. .++.++
T Consensus 22 l~~i~Gkpli~~~i~~~~~~--------~--~~~~ivv~~~~-----~~i~~~~~~---~g~-----~~~~~~------- 71 (229)
T 1qwj_A 22 IKRLAGVPLIGWVLRAALDA--------G--VFQSVWVSTDH-----DEIENVAKQ---FGA-----QVHRRS------- 71 (229)
T ss_dssp TSEETTEEHHHHHHHHHHHH--------T--CCSEEEEEESC-----HHHHHHHHH---TTC-----EEEECC-------
T ss_pred cceECCEEHHHHHHHHHHhC--------C--CcCEEEEECCh-----HHHHHHHHH---cCC-----EEEeCh-------
Confidence 68999999999999887653 2 11245665633 567777765 232 122211
Q ss_pred CCCeeeeecCCCC-ccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEE
Q 008919 81 EDGQWLVMRPFAP-VCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS 158 (548)
Q Consensus 81 ~dg~~~l~~~~~l-~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~ 158 (548)
..+ ...+.|.+.+..+|.. + .+.+++.+.+.|+++...+ .+-.++..+...+.+..+.+
T Consensus 72 ----------~~~~~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pli~~~-~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 72 ----------SETSKDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPCLHPT-DLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp ----------GGGSSTTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTTCCHH-HHHHHHHHHHSSCCSEEEEE
T ss_pred ----------hhhcCCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCcCCHH-HHHHHHHHHHhCCCCEEEEE
Confidence 000 0112233345555532 1 2467899999999998642 12123444445555554443
No 26
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=43.87 E-value=42 Score=33.47 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=52.9
Q ss_pred EEeeCcEeeee-----C-CCccccccceeeeEEEEEEeccceeEeeceeE--ecC----------eEEEecCCeEEEEee
Q 008919 447 KVLNKGIDWDC-----G-DNTYWKHDVQWFEALKVILHGNAEFEASDVTL--QGN----------HVFEVPDGHKLKITS 508 (548)
Q Consensus 447 ~V~N~G~~~~~-----~-~~~~w~~~~~r~e~~~i~~~g~~~f~a~~v~~--~g~----------~~~~vp~g~~~~~~~ 508 (548)
.=.|+||.+.. + ...-+..+..|+|.|-|.|.|.++.++.+.++ .|. .+.=||.|-+.+++.
T Consensus 20 tp~~a~~~y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a 99 (270)
T 2qjv_A 20 SPQNAGWEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTA 99 (270)
T ss_dssp CHHHHTSSSCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEE
T ss_pred CCCCCCcEEeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEe
Confidence 33466766321 1 33456788899999999999999999999877 343 588899999999987
Q ss_pred CCC-ceEEEecc
Q 008919 509 GNS-GLVVQLDP 519 (548)
Q Consensus 509 ~~~-~~~~~~~~ 519 (548)
..+ .+.+.-.|
T Consensus 100 ~~~~~~~v~sAp 111 (270)
T 2qjv_A 100 ETDLELAVCSAP 111 (270)
T ss_dssp SSSEEEEEEEEE
T ss_pred cCCceEEEEeee
Confidence 654 45554444
No 27
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=41.06 E-value=27 Score=28.70 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=22.5
Q ss_pred CCCceEEEeccccccccCCCcceEEEEEeCCeEEEEE
Q 008919 509 GNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLEL 545 (548)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 545 (548)
|++||.+..+|= ++-+|++.|+++|-+..+.|
T Consensus 22 Dg~GL~L~V~ps-----G~K~w~~ryr~~Gk~~~~~L 53 (88)
T 3jtz_A 22 DSHGLYLLVKPG-----GSRHWYLKYRISGKESRIAL 53 (88)
T ss_dssp CSTTEEEEECTT-----SCEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEEEecC-----CCEEEEEEEEeCCeEEEEEe
Confidence 446777777763 45789999998766655554
No 28
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=40.95 E-value=2.7e+02 Score=27.22 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.||++++..++.+.. .| +. .++|.|+. ...+...+++.+...+|+ ++.+..|+
T Consensus 28 llpi~gkpli~~~l~~l~~--------~g--i~-~Iivv~~~--~~~~~i~~~l~~g~~~g~---~i~~~~~~------- 84 (295)
T 1lvw_A 28 LLPIYDKPMIYYPLSVLML--------AG--IR-DILIISTP--RDLPLYRDLLGDGSQFGV---RFSYRVQE------- 84 (295)
T ss_dssp GSEETTEETTHHHHHHHHH--------TT--CC-EEEEEECT--TTHHHHHHHHTTSGGGTS---EEEEEECS-------
T ss_pred ecEECCeeHHHHHHHHHHH--------CC--CC-eEEEEecc--chHHHHHHHhhhccccCc---eEEEeeCC-------
Confidence 6899999999998887753 23 21 45666664 255667777776444554 22221111
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEEEEe
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 160 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~~v~ 160 (548)
.|.|-++.+... ++.+. .-.++.+. .||++... .+-.++..+...+.+..+.+ .
T Consensus 85 ---------------~~~G~~~al~~a-----~~~i~--~~~~~lv~-gD~~~~~~--~l~~~l~~~~~~~~~~~v~~-~ 138 (295)
T 1lvw_A 85 ---------------EPRGIADAFIVG-----KDFIG--DSKVALVL-GDNVFYGH--RFSEILRRAASLEDGAVIFG-Y 138 (295)
T ss_dssp ---------------SCCCGGGHHHHT-----HHHHT--TSCEEEEE-TTCCEECT--THHHHHHHHHTCCSSEEEEE-E
T ss_pred ---------------CCCChHHHHHHH-----HHHhC--CCcEEEEE-CCccccCc--CHHHHHHHHHHcCCCcEEEE-E
Confidence 245555433221 12221 22344444 89998653 33334554444444444332 3
Q ss_pred ccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHHHhh
Q 008919 161 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 230 (548)
Q Consensus 161 rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~ 230 (548)
+...+ ++-|++.. ..+|+ + +...|-|... . ....|+...+|+-+.++.+
T Consensus 139 ~v~dp-~~~g~v~~--d~~g~----v--~~~~ekp~~~---------~---s~~~~~Giy~f~~~~l~~~ 187 (295)
T 1lvw_A 139 YVRDP-RPFGVVEF--DSEGR----V--ISIEEKPSRP---------K---SNYVVPGLYFYDNQVVEIA 187 (295)
T ss_dssp ECSCC-TTSEEEEE--CTTSB----E--EEEEESCSSC---------S---CSEECCSEEEECTTHHHHH
T ss_pred ECCCc-ccCCEEEE--CCCCc----E--EEEEECCCCC---------C---CCEEEEEeEEEcHHHHHHH
Confidence 33233 35677653 24565 3 2332322210 0 1224888899998876543
No 29
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics, joint center F structural genomics, JCSG; HET: PG4; 2.07A {Bacteroides fragilis nctc 9343}
Probab=38.96 E-value=1.1e+02 Score=28.88 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=35.9
Q ss_pred eeeEEEEEEeccceeEeece-------eEecCeEEEecCCeEEEEeeCCCc-eEEEecc
Q 008919 469 WFEALKVILHGNAEFEASDV-------TLQGNHVFEVPDGHKLKITSGNSG-LVVQLDP 519 (548)
Q Consensus 469 r~e~~~i~~~g~~~f~a~~v-------~~~g~~~~~vp~g~~~~~~~~~~~-~~~~~~~ 519 (548)
+.+.+.+.+.|.|.++|.++ .+.|..-++|=.--+|.++-.|+| +.+.=+|
T Consensus 147 ~a~~~~~~~~Gsg~i~a~~l~~~~~~v~~~Gsg~~~v~~~~~l~~~~sGsG~i~~~G~P 205 (221)
T 3pet_A 147 TAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSP 205 (221)
T ss_dssp EEEEEEEEECSBSCEEEEEEEEEEEEEEECSBSCEEEEEEEEEEEEECSBSCEEEESCC
T ss_pred EeeeEEEEEeccceEEeeeeeeeEEEEEEEccccEEEEEcceEEEEEEEEEEEEEEccc
Confidence 45566888899998888754 355776666666678887766664 7776665
No 30
>3jx8_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc 8503}
Probab=37.23 E-value=2.7e+02 Score=26.49 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=49.5
Q ss_pred ceEEEeeeEEeeCcEeeeeCCCccccccceeeeEEEEEEeccceeEeec-------eeEecCeEEEecCCeEEEEeeCCC
Q 008919 439 GRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASD-------VTLQGNHVFEVPDGHKLKITSGNS 511 (548)
Q Consensus 439 ~~~~~~~~~V~N~G~~~~~~~~~~w~~~~~r~e~~~i~~~g~~~f~a~~-------v~~~g~~~~~vp~g~~~~~~~~~~ 511 (548)
|.+.+.++...+-=.+..-..+..-+- +.+.+++.+.|.|.++|.+ |.+.|..-++|=.--.+.++-.|.
T Consensus 149 G~i~~~~l~~~~l~~~~~Gsg~i~l~G---~a~~~~~~~sGsg~i~~~~l~~~~~~v~~sGsG~i~v~~~~~l~~~~sGs 225 (250)
T 3jx8_A 149 GNIIAKDIQLDNLSCSLASSGEIEVIG---TVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGS 225 (250)
T ss_dssp CEEEEEEEEEEEEEEEEESSCEEEEEE---EEEEEEEEEESSCEEEEEEEEEEEEEEEEESSCEEEEEEEEEEEEEEESS
T ss_pred eEEEEEeeeccEEEEEEEeeEEEEEEE---EEeeEEEEEEecEEEEEecCeeeeEEEEEEecCeEEEEEeceEEEEEEee
Confidence 455555554444333333333333332 5677788889999999876 456777777777777777776666
Q ss_pred c-eEEEeccc
Q 008919 512 G-LVVQLDPI 520 (548)
Q Consensus 512 ~-~~~~~~~~ 520 (548)
| +.+.=+|-
T Consensus 226 G~i~~~g~p~ 235 (250)
T 3jx8_A 226 GEIHYKGDPE 235 (250)
T ss_dssp CEEEEESCCE
T ss_pred EEEEEEcCCc
Confidence 4 77766653
No 31
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=33.31 E-value=88 Score=28.40 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=34.3
Q ss_pred eEEEeeeEEeeCcEeeeeCCCcccc---ccceeeeEEEEEEec-cceeE----eeceeEecCeEEEecCCe
Q 008919 440 RCKLNNVKVLNKGIDWDCGDNTYWK---HDVQWFEALKVILHG-NAEFE----ASDVTLQGNHVFEVPDGH 502 (548)
Q Consensus 440 ~~~~~~~~V~N~G~~~~~~~~~~w~---~~~~r~e~~~i~~~g-~~~f~----a~~v~~~g~~~~~vp~g~ 502 (548)
+..+-+|+|+|.|=+=...+...++ .+-.+.+.- +...+ +-.|. |.+=+++|..+|+||.|.
T Consensus 47 ~fviV~VTIeN~g~e~~~~s~~~F~L~d~dG~~~~~~-~~~~~~~~~l~~g~L~pG~kvtG~ivFeVP~~~ 116 (159)
T 3cfu_A 47 ERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPV-FSIEEKGRILMGGTLVSGKKVTGVLSYVIPKGE 116 (159)
T ss_dssp EEEEEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCE-ECSTTTTTBCCEEEECTTCEEEEEEEEEESTTC
T ss_pred EEEEEEEEEEECCCCceeeCcccEEEEeCCCCEEece-eeecccCCcccccccCCCCEEEEEEEEEECCCC
Confidence 4567779999988433322222111 333344332 11122 12343 355679999999999876
No 32
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=32.33 E-value=1.7e+02 Score=26.85 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=57.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++++. + .--.++|-|.. +...++++++ |. .++.+.
T Consensus 23 l~~i~gkpll~~~l~~~~~~--------~--~~~~ivvv~~~-----~~i~~~~~~~---~~-----~~~~~~------- 72 (228)
T 1ezi_A 23 LRKMNGISLLGHTINAAISS--------K--CFDRIIVSTDG-----GLIAEEAKNF---GV-----EVVLRP------- 72 (228)
T ss_dssp TCEETTEEHHHHHHHHHHHH--------C--CCSEEEEEESC-----HHHHHHHHHT---TC-----EEEECC-------
T ss_pred cceeCCcCHHHHHHHHHHhC--------C--CCCEEEEECCC-----HHHHHHHHHc---CC-----EEEeCc-------
Confidence 68999999999998887643 2 11256676754 5566777652 32 112111
Q ss_pred CCCeeeeecCCCCccccCCCc---hHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHG---AIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFA 157 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHG---dIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~~ 157 (548)
.. +.++|-| .++.+|. .+ ..+.+++.+.+.|+++...+ .+-.++..+...+.+..+.
T Consensus 73 ----------~~--~~~~~~g~~~sv~~~l~------~~-~~~~d~vlv~~~D~P~~~~~-~i~~l~~~~~~~~~~~~~~ 132 (228)
T 1ezi_A 73 ----------AE--LASDTASSISGVIHALE------TI-GSNSGTVTLLQPTSPLRTGA-HIREAFSLFDEKIKGSVVS 132 (228)
T ss_dssp ----------C--------CHHHHHHHHHHH------HH-TCCSEEEEECCTTCTTCCHH-HHHHHHTTCCTTTCCCEEE
T ss_pred ----------hH--HcCCCCChHHHHHHHHH------Hh-CCCCCEEEEEcCCCCcCCHH-HHHHHHHHHHhcCCCEEEE
Confidence 01 1112222 2444442 23 23568999999999987641 1112344444445555555
Q ss_pred E
Q 008919 158 S 158 (548)
Q Consensus 158 ~ 158 (548)
+
T Consensus 133 ~ 133 (228)
T 1ezi_A 133 A 133 (228)
T ss_dssp E
T ss_pred E
Confidence 4
No 33
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=31.53 E-value=2.2e+02 Score=26.22 Aligned_cols=160 Identities=9% Similarity=0.056 Sum_probs=85.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|+|+.|+++++..++++.+ .| ..-.++|.|+. +...++++++ |. . .+..
T Consensus 21 l~~i~g~pli~~~i~~~~~--------~~--~~~~ivvv~~~-----~~i~~~~~~~---~~-----~--------~~~~ 69 (245)
T 1h7e_A 21 LLDIVGKPMIQHVYERALQ--------VA--GVAEVWVATDD-----PRVEQAVQAF---GG-----K--------AIMT 69 (245)
T ss_dssp GCEETTEEHHHHHHHHHHT--------CT--TCCEEEEEESC-----HHHHHHHHHT---TC-----E--------EEEC
T ss_pred ccccCCchHHHHHHHHHHh--------CC--CCCeEEEECCc-----HHHHHHHHHc---CC-----e--------EEeC
Confidence 6899999999998887753 23 21256777754 6777777753 32 1 1211
Q ss_pred CCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhc-CCceeEEEE
Q 008919 81 EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH-GKKLGFASC 159 (548)
Q Consensus 81 ~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~-~~~~~~~~v 159 (548)
. ...+.|-++++.++.. + +-+++.+.+.|.++...+ .+-.++..+... +.++.+.++
T Consensus 70 ~------------~~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~~~~-~i~~l~~~~~~~~~~~~~~~~~ 127 (245)
T 1h7e_A 70 R------------NDHESGTDRLVEVMHK------V---EADIYINLQGDEPMIRPR-DVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp C------------SCCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTCCHH-HHHHHHHHHHHCTTCCEEEEEE
T ss_pred C------------CccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcCCHH-HHHHHHHHHHhCCCCCEEEEee
Confidence 1 0123445566655542 1 357899999999987641 122334444444 566655543
Q ss_pred eccC----CCCccceEEEEEecCCCceecceeEEEecc--cCccccCCCCCCCCCcccccccceeeEEEeHHHHHhhh
Q 008919 160 KRSS----GATEGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVG 231 (548)
Q Consensus 160 ~rK~----~~~e~vGvL~~~~~~dG~~~~~~~vVEYse--l~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~~l 231 (548)
+..+ .+ ..+.++.. .+|+ +. .+++ .+.. +. + ... ....|+....|+.+.+.+.+
T Consensus 128 ~~~~~~~~~~-~~~~~~~~---~~g~----~~--~~~~~~~~~~-----r~-~-~~~-~~~~~~g~y~~~~~~l~~~~ 187 (245)
T 1h7e_A 128 AISAAEAAEP-STVKVVVN---TRQD----AL--YFSRSPIPYP-----RN-A-EKA-RYLKHVGIYAYRRDVLQNYS 187 (245)
T ss_dssp EECHHHHTCT-TSCEEEEC---TTCB----EE--EEESSCSSCC-----TT-G-GGC-CEEEEEEEEEEEHHHHHHGG
T ss_pred cCCHHHhcCC-CCcEEEEC---CCCc----EE--EeecCCCCCC-----cc-c-ccC-ceeEEEEEEEcCHHHHHHHH
Confidence 2210 11 12333322 4565 33 3333 1211 00 0 011 12239999999999887765
No 34
>3sft_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; modified doubly-wound/fold, chemoreceptor; 2.15A {Thermotoga maritima}
Probab=30.24 E-value=42 Score=31.73 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=42.6
Q ss_pred eCCCcccc---ccceeeeEEEEEEeccceeEee-ceeEecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCCc
Q 008919 457 CGDNTYWK---HDVQWFEALKVILHGNAEFEAS-DVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGS 529 (548)
Q Consensus 457 ~~~~~~w~---~~~~r~e~~~i~~~g~~~f~a~-~v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (548)
+.+..|=+ .-+.|.=.+.++ ||+ .-.++-+++|..|.|++|.+..++++.+..|++-++.-...||
T Consensus 42 Hm~~~f~~~la~~L~~~~~l~V~-------ea~dg~~l~pG~vYiaP~~~hl~v~~~~~~~~~~l~~~~~~~~~rPs 111 (193)
T 3sft_A 42 HMPPGFTKSLAMRLDSTSELTVK-------EAEDGEEVKPGFVYIAPGDFHLGLKAQNGKVFFFLDKSDKINNVRPA 111 (193)
T ss_dssp CCCTTCHHHHHHHHHHHCSSEEE-------ECCTTCBCCTTEEEECCTTSEEEEEEETTEEEEEEECCCCSSSCSSC
T ss_pred CCCCCcHHHHHHHHhccCCCcEE-------EeCCCCEecCCEEEEcCCCcEEEEEEcCCceEEEECCCCccCCCCCC
Confidence 34444433 444555455553 333 2458899999999999999998777777777765543334444
No 35
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl methylesteras; 1.75A {Salmonella typhimurium} SCOP: c.40.1.1
Probab=29.58 E-value=43 Score=31.90 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=32.9
Q ss_pred eeEecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCCc
Q 008919 488 VTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGS 529 (548)
Q Consensus 488 v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (548)
-.++-+++|..|.|++|.+..++.+.+..|++-++.....||
T Consensus 72 ~~l~pg~vYiaP~~~hl~v~~~~~~~~~~l~~~~~~~~~rPs 113 (203)
T 1chd_A 72 ERVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPVNRHRPS 113 (203)
T ss_dssp CBCCTTEEEECCTTSEEEEEEETTEEEEEEECCCCBTTBSSC
T ss_pred CEecCCEEEEcCCCceEEEEeCCceEEEEECCCCccCCCCCC
Confidence 468899999999999999998877777888766554444454
No 36
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3
Probab=27.95 E-value=4.6e+02 Score=26.40 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=41.8
Q ss_pred eeceEEEeeeEEee--CcEeeeeCCCcccccccee--eeEEEEEEecc-ceeEeeceeEecCeEEEecCCeEEEEeeCCC
Q 008919 437 RCGRCKLNNVKVLN--KGIDWDCGDNTYWKHDVQW--FEALKVILHGN-AEFEASDVTLQGNHVFEVPDGHKLKITSGNS 511 (548)
Q Consensus 437 ~~~~~~~~~~~V~N--~G~~~~~~~~~~w~~~~~r--~e~~~i~~~g~-~~f~a~~v~~~g~~~~~vp~g~~~~~~~~~~ 511 (548)
.|-.|.|+|..|.| .++.+.+.+|..-.+-.-+ | .+.|==+|. .+=.-+||++++..+.-.-.|.|++..+++.
T Consensus 173 ~s~nV~I~n~~i~~gDDcIaiksg~nI~i~n~~~~~gh-GisiGS~G~~~~~~v~nV~v~n~~~~~~~~GirIKt~~g~~ 251 (349)
T 1hg8_A 173 SSDHVTLDNNHVYNQDDCVAVTSGTNIVVSNMYCSGGH-GLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGAT 251 (349)
T ss_dssp SCEEEEEEEEEEECSSCSEEESSEEEEEEEEEEEESSC-CEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCC
T ss_pred cccEEEEEeeEEecCCCeEEeeCCeEEEEEeEEEeCCc-ceEEccccccccCCEEEEEEEEEEEECCCcEEEEEecCCCC
Confidence 35578888888876 3455554322211110000 1 122211111 1234678888888888877888888766655
Q ss_pred ceE
Q 008919 512 GLV 514 (548)
Q Consensus 512 ~~~ 514 (548)
|..
T Consensus 252 G~v 254 (349)
T 1hg8_A 252 GTI 254 (349)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 37
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=26.07 E-value=98 Score=26.77 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=30.1
Q ss_pred eeeeCCCccccccceeeeEEEEEEeccceeEeec---eeEecCeEEEecCCeEEE
Q 008919 454 DWDCGDNTYWKHDVQWFEALKVILHGNAEFEASD---VTLQGNHVFEVPDGHKLK 505 (548)
Q Consensus 454 ~~~~~~~~~w~~~~~r~e~~~i~~~g~~~f~a~~---v~~~g~~~~~vp~g~~~~ 505 (548)
.|++---.+|-+.-+..|.|-| |+|.++++..| +++.---++.+|.|++-+
T Consensus 46 vWe~tPG~~~~~~~~~~E~~~i-LeG~~~lt~ddG~~~~l~aGD~~~~P~G~~gt 99 (116)
T 3es4_A 46 VWMAEPGIYNYAGRDLEETFVV-VEGEALYSQADADPVKIGPGSIVSIAKGVPSR 99 (116)
T ss_dssp EEEECSEEEEECCCSEEEEEEE-EECCEEEEETTCCCEEECTTEEEEECTTCCEE
T ss_pred EEecCCceeECeeCCCcEEEEE-EEeEEEEEeCCCeEEEECCCCEEEECCCCeEE
Confidence 4554333444444444588765 78888886543 556555666667666544
No 38
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=25.79 E-value=80 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.493 Sum_probs=21.4
Q ss_pred CCceEEEeccccccccCCCcceEEEEEeCCeEEEEE
Q 008919 510 NSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLEL 545 (548)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 545 (548)
++||.+..+|= ++-+|++.|+++|-+..+.|
T Consensus 23 g~GL~L~V~ps-----G~K~w~~rYr~~GK~~~~~L 53 (108)
T 3ju0_A 23 GFGMHLLVHPN-----GSKYWRLSYRFEKKQRLLAL 53 (108)
T ss_dssp ETTEEEEECTT-----SCEEEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEcC-----CCEEEEEEEEEcCceEEEec
Confidence 35777776663 45789999998766655554
No 39
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=24.93 E-value=1.4e+02 Score=25.93 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=37.0
Q ss_pred EEecCCeEEEEeeCCCceEEEeccccccccCCCcceEEEEE-eCCeEEEEE
Q 008919 496 FEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKI-NGSHIVLEL 545 (548)
Q Consensus 496 ~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~ 545 (548)
++||+|-.+.+.|+ |.++-|..|++..-.+.+-.=...+ +++.|.+++
T Consensus 67 i~ipag~~v~l~PG--G~HvML~gl~~~l~~G~~v~ltL~Fe~~~~v~v~~ 115 (120)
T 2k6w_A 67 LEVPPKGRVELKPG--GYHFMLLGLKRPLKAGEEVELDLLFAGGKVLKVVL 115 (120)
T ss_dssp EEECTTCEEEECTT--TEEEEEEEESSCBCTTCEEEEEEEETTTEEEEEEE
T ss_pred EeECCCCEEeccCC--ceEEEEeCCCCCCCCCCEEEEEEEECCCCeEEEEE
Confidence 89999999999877 7788888887766667777777888 445666554
No 40
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=23.78 E-value=40 Score=31.75 Aligned_cols=169 Identities=13% Similarity=0.096 Sum_probs=87.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEEec
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDA 80 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~ 80 (548)
|||+.|+++++..++++.+. | . -.++|.|+. .++.+.++|.+...++ .++.+..|+.--.+.
T Consensus 27 l~~i~gkpli~~~l~~l~~~--------g--~-~~i~vv~~~---~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~- 88 (259)
T 1tzf_A 27 MVEIGGKPILWHIMKMYSVH--------G--I-KDFIICCGY---KGYVIKEYFANYFLHM---SDVTFHMAENRMEVH- 88 (259)
T ss_dssp GCEETTEEHHHHHHHHHHHT--------T--C-CEEEEEECT---THHHHHHHHHTHHHHH---SCEEEEGGGTEEEET-
T ss_pred ccEECCEEHHHHHHHHHHHC--------C--C-CEEEEEccc---CHHHHHHHHhhccccc---ccccccccccceeee-
Confidence 68999999999988877542 3 1 257888887 5678889988643111 124444443200011
Q ss_pred CCCeeeeecCCCC----ccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhhcCCceeE
Q 008919 81 EDGQWLVMRPFAP----VCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGF 156 (548)
Q Consensus 81 ~dg~~~l~~~~~l----~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~~~~~~~~ 156 (548)
+ .. ..++.+ .-.+-|.|+...+.. +.+. +-+++.+.+.|++. .. .+-.++..+...+..+.+
T Consensus 89 ~-~~---~~~~~v~~~~~~~~~gt~~al~~a~-----~~~~--~~~~~lv~~~D~~~-~~--~~~~~~~~~~~~~~~~t~ 154 (259)
T 1tzf_A 89 H-KR---VEPWNVTLVDTGDSSMTGGRLKRVA-----EYVK--DDEAFLFTYGDGVA-DL--DIKATIDFHKAHGKKATL 154 (259)
T ss_dssp T-CC---CCCCEEEEEECCSSCCHHHHHHHTG-----GGTT--TSSCEEEEETTEEE-CC--CHHHHHHHHHHHCCSEEE
T ss_pred e-cc---ccccceeeeecccccCcHHHHHHHH-----HhcC--CCCcEEEEECCEec-cc--CHHHHHHHHHHhCCeEEE
Confidence 0 00 011111 012456655433221 2221 23678888999843 23 233446666556665544
Q ss_pred EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCcccccccceeeEEEeHHHH
Q 008919 157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASA 227 (548)
Q Consensus 157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~Ninnl~~~L~~l 227 (548)
.. ++ +...-|++.. .+|+ ++++.|-|.. . .+..|+...+|+-+.+
T Consensus 155 ~~-~~---~~~~~g~v~~---~~g~------v~~~~ekp~~--------~-----~~~~~~Giy~~~~~~l 199 (259)
T 1tzf_A 155 TA-TF---PPGRFGALDI---QAGQ------VRSFQEKPKG--------D-----GAMINGGFFVLNPSVI 199 (259)
T ss_dssp EE-EC---CCCCSEEEEE---ETTE------EEEEEESCSC--------C-----SCCEECCCEEECGGGG
T ss_pred EE-ec---CCCCccEEEE---cCCE------EEEEEecCCC--------C-----CceEEEEEEEeCHHHH
Confidence 32 22 2234566654 2564 3444442211 0 2335888889888766
No 41
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=23.30 E-value=1e+02 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=29.5
Q ss_pred cccccceeeeEEEE-------EEeccceeEeeceeEecCeEEEecCCeEEEEee
Q 008919 462 YWKHDVQWFEALKV-------ILHGNAEFEASDVTLQGNHVFEVPDGHKLKITS 508 (548)
Q Consensus 462 ~w~~~~~r~e~~~i-------~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~ 508 (548)
.|-..-...|.|+| .|.|..|+ .++.....|+||++-+..+.-
T Consensus 34 eytF~T~~~E~M~vvsG~~~V~lpg~~ew----~~~~aGesF~Vpans~F~l~v 83 (94)
T 2oyz_A 34 EYTFGTQAPERMTVVKGALVVKRVGEADW----TTYSSGESFDVEGNSSFELQV 83 (94)
T ss_dssp EEEEEESSCEEEEEEESEEEEEETTCSSC----EEEETTCEEEECSSEEEEEEE
T ss_pred EEEEcCCCeEEEEEEEeEEEEEcCCCCcC----EEECCCCEEEECCCCEEEEEE
Confidence 45555666676655 45554443 788899999999998777653
No 42
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=22.28 E-value=34 Score=30.83 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=32.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHH
Q 008919 1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCER 56 (548)
Q Consensus 1 ~Lpvsgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~ 56 (548)
|+|+.|+++++..++++++. | + -.++|-|+. .++.+.+++++
T Consensus 21 l~~~~g~pli~~~l~~l~~~--------~--~-~~v~vv~~~---~~~~i~~~~~~ 62 (196)
T 3rsb_A 21 LIKLCGRCLIDYVVSPLLKS--------K--V-NNIFIATSP---NTPKTKEYINS 62 (196)
T ss_dssp GCEETTEEHHHHHHHHHHSS--------S--C-CCEEEECCT---TCHHHHHHHHH
T ss_pred EEEECCEEHHHHHHHHHHHC--------C--C-CEEEEEeCC---ChHHHHHHHHh
Confidence 58899999999998887532 2 1 267888887 56888999987
No 43
>3lyc_A Putative pectinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: MSE; 2.30A {Parabacteroides distasonis}
Probab=22.18 E-value=4.9e+02 Score=24.37 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=36.8
Q ss_pred eeeEEEEEEeccceeEeece-------eEecCeEEEecCCeEEEEeeCCCc-eEEEecc
Q 008919 469 WFEALKVILHGNAEFEASDV-------TLQGNHVFEVPDGHKLKITSGNSG-LVVQLDP 519 (548)
Q Consensus 469 r~e~~~i~~~g~~~f~a~~v-------~~~g~~~~~vp~g~~~~~~~~~~~-~~~~~~~ 519 (548)
+.+.+++.+.|.|.++|+++ .+.|..-++|-.--.+.++-.|+| +.+.=+|
T Consensus 166 ~~~~~~~~~~Gsg~i~~~~l~~~~~~v~~~Gsg~i~v~~~~~l~~~~sGsG~i~~~g~p 224 (241)
T 3lyc_A 166 TVGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVNKIKAEIAGSGSVKYKGDP 224 (241)
T ss_dssp EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEESCC
T ss_pred EEeeEEEEEeccEEEEEEccccceEEEEEEecceEEEEEcCEEEEEEEEeEEEEEEeCC
Confidence 45667888899999988764 366777777776667777755554 7777666
No 44
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=21.23 E-value=70 Score=32.41 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=32.4
Q ss_pred eeEecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCCc
Q 008919 488 VTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGS 529 (548)
Q Consensus 488 v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (548)
-.++-+++|..|.|++|.+..+|.+++..|++-++.-+..||
T Consensus 218 ~~~~~g~vyiap~~~~~~~~~~~~~~~~~l~~~~~~~~~~ps 259 (349)
T 1a2o_A 218 ERVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPVNRHRPS 259 (349)
T ss_dssp CBCCTTEEEECCTTSEEEEEEETTEEEEEEECCCCSSSCSSC
T ss_pred CEecCCEEEEcCCCcEEEEEeCCCeEEEEECCCCccCCCCCC
Confidence 357889999999999999998888888888765544344444
No 45
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=20.85 E-value=5.7e+02 Score=24.67 Aligned_cols=190 Identities=13% Similarity=0.021 Sum_probs=94.1
Q ss_pred CCCC--CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeEE
Q 008919 1 MLPY--CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAV 78 (548)
Q Consensus 1 ~Lpv--sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l 78 (548)
|+|+ .|+++++..++++... | + -.++|.|.. ...+...++|.....+++ ++.+..|+..- +
T Consensus 25 l~~ig~~g~pli~~~l~~~~~~--------~--~-~~i~vv~~~--~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~ 87 (303)
T 3pnn_A 25 LDGIGPGGDTIMDYSVYDAIRA--------G--F-GRLVFVIRH--SFEKEFREKILTKYEGRI---PVELVFQELDR-L 87 (303)
T ss_dssp CCCCSTTSCCHHHHHHHHHHHH--------T--C-CEEEEEECG--GGHHHHHHHTHHHHTTTS---CEEEEECCTTC-C
T ss_pred EeEcCCCCeeHHHHHHHHHHHC--------C--C-CeEEEEcCc--hHHHHHHHHHHHHhccCC---cEEEEeccccc-c
Confidence 6899 6999999999887542 3 2 257788876 235788888886443343 46666666311 1
Q ss_pred ecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCcccccchhHHHHhhhhhh---cCCcee
Q 008919 79 DAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLH---HGKKLG 155 (548)
Q Consensus 79 ~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~Dp~il~~lG~~~~---~~~~~~ 155 (548)
. ........ ...|-|-| +..+.....++ +.+.|.+.|++ ...| .+-.++.+..+ .+.++.
T Consensus 88 ~-~~~~~~~~-----~~~~~Gt~--~al~~a~~~i~-------~~~lV~~gD~l-~~~~-~~~~l~~~~~~~~~~~~~~~ 150 (303)
T 3pnn_A 88 P-EGFSCPEG-----REKPWGTN--HAVLMGRDAIR-------EPFAVINADDF-YGRN-GFEVLARKLMTLEGKQGEYC 150 (303)
T ss_dssp C-TTCCCCTT-----CCSCCCHH--HHHHTTTTTCC-------SCEEEEESSCB-CCHH-HHHHHHHHHHTTTTCSSEEE
T ss_pred c-cccccccc-----ccccCCcH--HHHHHHHHhcC-------CCEEEEECCee-cCHH-HHHHHHHHHHHhccccCceE
Confidence 1 11111110 01344544 33333322331 34566778884 3332 23334555443 345666
Q ss_pred EEEEeccCCC-Cc-c---ceEEEEEecCCCceecceeEEEecccCcccc-CCCCCCCCCcc--c-ccccceeeEEEeHHH
Q 008919 156 FASCKRSSGA-TE-G---INVLIEKKNLDGKWAYGLSCIEYTEFDKFGI-TRGPFSSNGLQ--A-DFPANTNILYVDLAS 226 (548)
Q Consensus 156 ~~~v~rK~~~-~e-~---vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~-~~~~~~~g~l~--s-~f~~Ninnl~~~L~~ 226 (548)
+.+ .+-..+ .. + -|++.. ..+|+ ...++|-.+.+...- ..-+..+|+.. . ..-.|++...|+-+.
T Consensus 151 v~~-~~~~~~~~~~g~~~~G~v~~--d~~g~---v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~ 224 (303)
T 3pnn_A 151 MVG-YRVGNTLSESGGVSRGVCQV--DEKHL---LTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDY 224 (303)
T ss_dssp EEE-EEGGGSCBTTBCEEEEEEEE--CTTSB---EEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHH
T ss_pred EEE-EECCCccCccCceeeeeEee--CCCCc---EEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHH
Confidence 554 333223 22 1 256654 24565 244566554432100 00001112100 0 122499999999887
Q ss_pred HHhh
Q 008919 227 AELV 230 (548)
Q Consensus 227 l~~~ 230 (548)
++.+
T Consensus 225 ~~~l 228 (303)
T 3pnn_A 225 FDYS 228 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 46
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=20.25 E-value=71 Score=34.55 Aligned_cols=50 Identities=28% Similarity=0.526 Sum_probs=25.3
Q ss_pred eeEEEEEEeccceeEeeceeEecCeEEE---------ecCCeEEE---EeeCCCceEEEeccccc
Q 008919 470 FEALKVILHGNAEFEASDVTLQGNHVFE---------VPDGHKLK---ITSGNSGLVVQLDPIEQ 522 (548)
Q Consensus 470 ~e~~~i~~~g~~~f~a~~v~~~g~~~~~---------vp~g~~~~---~~~~~~~~~~~~~~~~~ 522 (548)
.|+-.++++|..-| -+||++.|..+++ ||+|..+. ++++ ++.-+.+||+.
T Consensus 439 ~~~~~L~v~G~~~f-~~~v~l~G~v~i~a~~~~~~~~ip~g~~l~n~~~~~~--~~~~~~~~~~~ 500 (505)
T 2oeg_A 439 VECKRVTVKGLVQF-GAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASPQ--QSTNKMRPLEH 500 (505)
T ss_dssp TTEEEEEEESSEEC-CTTCEEEEEEEEECCSCSSCEECCTTCEEESCEECC--------------
T ss_pred ccCcEEEEEcceEE-ccCcEEEEEEEEEecCCCCcEEeCCCCEEeCceechh--hhccccccccc
Confidence 45556777998665 6789999877665 56665554 2222 56666666643
Done!