Your job contains 1 sequence.
>008920
MMDKKKSEDNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFN
PMNSDSLDSNNSELKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEP
NGTIENEIKKEHSSNVGSESYLNRQKQNSNFSVEGKKRSENKKTKKRKRDDVEKDYVEKK
YGVIAKEEEGKKVGVGEKRKKADNETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKK
TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA
LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGL
NDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNC
TPSKRKDVAPAVNSPPKKFVLDSRTLGSGNRSNSKVAMSYQGLQASKSCTQKKVHSGSSG
VVKMKKSRTQKGERPKVQPEKRPAVALRKARAKAPKDVWVSRQAGMKRKMESQTPEISQR
KKAKVNER
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008920
(548 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172937 - symbol:AT5G46840 species:3702 "Arabi... 909 9.7e-99 2
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 325 3.5e-29 1
DICTYBASE|DDB_G0289941 - symbol:DDB_G0289941 "Nucleolar p... 314 2.4e-27 2
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 297 6.0e-26 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 306 7.4e-26 1
CGD|CAL0002615 - symbol:orf19.809 species:5476 "Candida a... 309 9.1e-26 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 295 1.0e-25 1
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 301 3.2e-25 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 300 6.3e-25 1
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 295 3.0e-24 1
POMBASE|SPAC16E8.06c - symbol:nop12 "RNA-binding protein ... 290 1.6e-23 1
UNIPROTKB|J9NU83 - symbol:RBM34 "Uncharacterized protein"... 256 2.2e-21 1
WB|WBGene00008688 - symbol:F11A10.7 species:6239 "Caenorh... 262 1.9e-20 1
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 218 1.3e-18 3
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 202 2.7e-16 2
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 215 1.0e-14 1
ASPGD|ASPL0000048939 - symbol:AN1452 species:162425 "Emer... 124 2.5e-09 2
UNIPROTKB|A8NJ74 - symbol:RBM34 "Uncharacterized protein"... 156 1.1e-08 1
SGD|S000005119 - symbol:NOP13 "Nucleolar protein found in... 134 9.3e-06 1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 129 2.7e-05 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 123 4.6e-05 2
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 105 5.6e-05 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 105 5.6e-05 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 114 9.0e-05 2
WB|WBGene00007111 - symbol:B0035.12 species:6239 "Caenorh... 129 9.7e-05 1
POMBASE|SPAC22E12.02 - symbol:SPAC22E12.02 "RNA-binding p... 117 0.00017 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 122 0.00019 2
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 113 0.00028 1
FB|FBgn0015818 - symbol:Spx "Spliceosomal protein on the ... 119 0.00036 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 88 0.00040 2
POMBASE|SPBC887.05c - symbol:cwf29 "RNA-binding protein C... 113 0.00049 1
ZFIN|ZDB-GENE-041210-114 - symbol:zcrb1 "zinc finger CCHC... 113 0.00050 1
UNIPROTKB|I3LLT9 - symbol:ZCRB1 "Uncharacterized protein"... 96 0.00052 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 99 0.00060 2
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 108 0.00064 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 108 0.00064 2
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 99 0.00070 2
MGI|MGI:1914447 - symbol:Zcrb1 "zinc finger CCHC-type and... 103 0.00071 2
RGD|1309851 - symbol:Zcrb1 "zinc finger CCHC-type and RNA... 103 0.00071 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 118 0.00073 1
UNIPROTKB|G3MZL2 - symbol:RBM28 "Uncharacterized protein"... 119 0.00087 2
>TAIR|locus:2172937 [details] [associations]
symbol:AT5G46840 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0009560 "embryo sac egg
cell differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB022221
KO:K14837 OMA:AEGHSKS EMBL:BT009688 EMBL:AK228177 IPI:IPI00521492
RefSeq:NP_199496.1 UniGene:At.29928 ProteinModelPortal:Q9LUK6
SMR:Q9LUK6 IntAct:Q9LUK6 PRIDE:Q9LUK6 EnsemblPlants:AT5G46840.1
GeneID:834728 KEGG:ath:AT5G46840 TAIR:At5g46840 InParanoid:Q9LUK6
PhylomeDB:Q9LUK6 ProtClustDB:CLSN2686334 Genevestigator:Q9LUK6
Uniprot:Q9LUK6
Length = 501
Score = 909 (325.0 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 197/354 (55%), Positives = 248/354 (70%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
+E D +V + EGFDDE KLLRT+FVGNLPLKVKKK ++KEF KFGE++SVRIRSVPI+
Sbjct: 151 DEVADTMVSK--EGFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIV 208
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRK 323
D+K RKGAI+ KQINE A SVHAY+VF++EQS A+LA NM++I GNH+R+DRACPPRK
Sbjct: 209 DSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRK 268
Query: 324 KLKG-EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382
K KG +D LYD K+TVF+GNLPFDVKDEE+YQLF G ++LE+S+EAVRVIR PH+ +GK
Sbjct: 269 KQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGK 328
Query: 383 GIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNCTPSKRKDVAPAVNSPPKKFVLD 442
GIAYVLFKTREAANLV+K+ LKLR+RELR+S + + TPSKRK SP +K +
Sbjct: 329 GIAYVLFKTREAANLVLKKGYLKLRERELRISRVKPD-TPSKRKSNPSEAYSPAQKRLQK 387
Query: 443 SRTLGSGNRSNSKVAMSYQGLQASKSCTQXXXXXXXXXXXXXXXXR-------TQKGERP 495
+ + K +SYQG++ASKS R + G
Sbjct: 388 DKVVTP--TPTGKANLSYQGVRASKSGDDKKTPYQKSSAQTKMRPRGSSSNDNKKSGNNS 445
Query: 496 --KVQPEKRPAVALRKARA--KAPKDVWVSRQAGMKRKMESQTPE-ISQRKKAK 544
K + +KRPAVA RKA+A K K+ R AG KRK E++TPE S++KK K
Sbjct: 446 ASKERSQKRPAVAARKAKANAKGSKESGGKRFAGTKRKQENRTPESFSKKKKTK 499
Score = 91 (37.1 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 42/158 (26%), Positives = 74/158 (46%)
Query: 2 MDKKKSE----DNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENES 57
M KKKS+ ++ +IF+TLF G ES+ +SLFS NPF+R ++ Q + S
Sbjct: 1 MGKKKSKVTEPESQNDESQTIFSTLFSG-EVESSGFASLFSADNPFRR--KQPQEIKESS 57
Query: 58 IFNPMXXXXXXXXXXELKKIK----KTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPR 113
I + E ++ KT++ K L D+ G +T+S + + + L+ R
Sbjct: 58 IPDEKKGDKRNAENEEEEEETDLPVKTKKSKKEKKLTDS-GDEKETISEAVEESGLVSKR 116
Query: 114 SILGFEPNGTIENEIK-KEHSSNVGSESYLNRQKQNSN 150
IENE + K++ S E + +++ ++
Sbjct: 117 KK---RKRDEIENEYETKKYGSVEMKEKKVGEKRKKAD 151
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 325 (119.5 bits), Expect = 3.5e-29, P = 3.5e-29
Identities = 85/233 (36%), Positives = 131/233 (56%)
Query: 203 DNETEDMLVHRKEEGFDDEG--KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV 260
++E E H+K F+ E K+ RT+FVGNLP KKK L+ F K G I+SVR RSV
Sbjct: 124 EDEEERPTKHKKTVKFNAEERLKMKRTVFVGNLPSSCKKKDLLSVFKKSGVIESVRFRSV 183
Query: 261 PIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVI-GGNHIRLDRAC 319
D + RK A +Q++++ +++AYIVFK E+S AL +N I G +IR+DR
Sbjct: 184 IREDPTMSRKVAAIQRKVHPKKQNINAYIVFKEEESATDALKWNGHEIQAGFYIRVDRVS 243
Query: 320 PPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPH 377
K +D K+++FVGNLP+D+ + + F CG ++EAVR++R
Sbjct: 244 QHSK---------HDHKRSIFVGNLPYDISELPLQNHFQECG------NIEAVRLVRDRD 288
Query: 378 MRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA----QQNCTPSKRK 426
+GKG YVLF++ ++ L +K L+ R++R+ + ++ TP RK
Sbjct: 289 SGMGKGFGYVLFESPDSVMLALKLNGSTLQQRKIRVKRSVKKEKEKKTPPGRK 341
>DICTYBASE|DDB_G0289941 [details] [associations]
symbol:DDB_G0289941 "Nucleolar protein 12"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0289941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000149 eggNOG:COG0724
KO:K14837 RefSeq:XP_635997.1 ProteinModelPortal:Q54GS2
EnsemblProtists:DDB0188659 GeneID:8627412 KEGG:ddi:DDB_G0289941
InParanoid:Q54GS2 OMA:REIRIFP ProtClustDB:CLSZ2731818
Uniprot:Q54GS2
Length = 481
Score = 314 (115.6 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 80/233 (34%), Positives = 129/233 (55%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADS 284
RT+FV N+ L K +K+ K FG+I+S+R RS+P+ RK ++K+ +E ++
Sbjct: 257 RTVFVSNINLNHAKDNELKQLFKPFGQIESIRFRSIPLSSIDGNRKETFIKKEFHEKRET 316
Query: 285 VHAYIVFKS-EQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGN 343
+AYIVFK + +AA N G H+R+D A K K DA KT+F+GN
Sbjct: 317 CNAYIVFKQIADAKKAAKQMNGKEAFGKHLRVDMA--DHKPTKASDA------KTIFIGN 368
Query: 344 LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN 403
+P++ ++EE++ +F + V +VR+IR H +GKG YV F T E A+ I +++
Sbjct: 369 IPYETEEEELFLIF---DKTFGDVVSVRIIRDSHTNIGKGFGYVNFSTDETASTAIAQKS 425
Query: 404 LKLRDRELRLSHAQQNCTPSKRKDVAPAVNSPPKKFVLDSR--TLG-SGNRSN 453
++ RE+R+ ++N P K K + KK +L+ + T G S N+SN
Sbjct: 426 IQFGKREIRIFPTKEN--PKKGKTIKE------KKKLLNKKPSTRGASQNKSN 470
Score = 45 (20.9 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 74 LKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILG----FEPNGTIENE 127
LKK + T ++ N + +A T+ + KS K ++ EPN T NE
Sbjct: 158 LKKSESTNTKQENNEKTTTTASAATTIKKTEKSNKTSLLKAFSSDNQYSEPNVTEINE 215
Score = 38 (18.4 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 17/70 (24%), Positives = 27/70 (38%)
Query: 13 SAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFNPMXXXXXXXXXX 72
S P+S TT E+T FS + K+ ES + + E N
Sbjct: 128 SEPTSTPTTTTTTTTKETTQPQKPFSIFDSLKKS--ESTNTKQE---NNEKTTTTASAAT 182
Query: 73 ELKKIKKTRQ 82
+KK +K+ +
Sbjct: 183 TIKKTEKSNK 192
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 297 (109.6 bits), Expect = 6.0e-26, P = 6.0e-26
Identities = 76/206 (36%), Positives = 120/206 (58%)
Query: 211 VHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRK 270
V+ +EE +E RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K
Sbjct: 178 VNPEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKK 233
Query: 271 GAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGED 329
A ++++ + + S++AY+VFK E + AL N A I G IR+D A + D
Sbjct: 234 LAAIKRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLA----SETASRD 289
Query: 330 APLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYV 387
K++VFVGNLP+ ++D + + F CG S+ AVR++R+P VG+G YV
Sbjct: 290 ------KRSVFVGNLPYKIEDSALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYV 337
Query: 388 LFKTREAANLVIKRRNLKLRDRELRL 413
LF+ +A +L +K N +L R+LR+
Sbjct: 338 LFENTDAVHLALKLNNSELMGRKLRV 363
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 306 (112.8 bits), Expect = 7.4e-26, P = 7.4e-26
Identities = 79/212 (37%), Positives = 122/212 (57%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K A ++++ + + S+
Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242
Query: 286 HAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL 344
+AY+VFK E++ AL N A I G IR+D A + D K++VFVGNL
Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLA----SETASRD------KRSVFVGNL 292
Query: 345 PFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402
P+ V + + + F CG S+ AVR++R+P VG+G YVLF+ +A +L +K
Sbjct: 293 PYRVDESALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 346
Query: 403 NLKLRDRELRLSHA-------QQNCTPSKRKD 427
N +L R+LR+ + QQN PS +KD
Sbjct: 347 NSELMGRKLRVMRSVNKEKLKQQNSNPSVKKD 378
>CGD|CAL0002615 [details] [associations]
symbol:orf19.809 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002615 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
EMBL:AACQ01000019 EMBL:AACQ01000018 RefSeq:XP_720933.1
RefSeq:XP_721055.1 ProteinModelPortal:Q5AHI7 STRING:Q5AHI7
GeneID:3637230 GeneID:3637377 KEGG:cal:CaO19.809
KEGG:cal:CaO19.8429 KO:K14837 Uniprot:Q5AHI7
Length = 454
Score = 309 (113.8 bits), Expect = 9.1e-26, P = 9.1e-26
Identities = 87/256 (33%), Positives = 139/256 (54%)
Query: 226 RTIFVGNLPLKV-KKKTLIKEF---IK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
RT+FVGN+P V K + K F K +G+IDS+R RS+ D +PRK A +K +++
Sbjct: 159 RTVFVGNVPADVITSKIIAKNFKNLFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHK 217
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
+ DSV+AYIV+K + ++ AA N V +H+R+D P K D K+T+F
Sbjct: 218 SRDSVNAYIVYKEKPASIAAKELNATVFEDHHLRVDHVSHPAPK---------DNKRTIF 268
Query: 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN--LV 398
VGNL F+ K+E +++ F + L+ VE+VR+IR +GKG A V FK + N L+
Sbjct: 269 VGNLDFEEKEETLWKYFN--SKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALL 326
Query: 399 IKRRNLKL----RDRELRLSHAQQNCTPSKRKDVAPA-VNSPPKKFVLDSRTLGSGNRSN 453
+ + L+ + R+LR+S A+ N PS ++P ++ KKF +
Sbjct: 327 LNDKPLETGTQKKGRKLRISRAKSNAKPSL---MSPNHFDNQKKKFAAGKSQQKLNDNQK 383
Query: 454 SKVAMSYQGL-QASKS 468
+K+ + L +A +S
Sbjct: 384 TKIGRAQSTLGKADRS 399
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 77/223 (34%), Positives = 121/223 (54%)
Query: 213 RKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV-PIIDTKIPRKG 271
+K+ ++ K RT+FVGNLP+ + L F ++G+I+S+R RSV P DT + RK
Sbjct: 134 KKKNEAEEMIKNKRTVFVGNLPVDCTAQMLKSLFKEYGQIESIRFRSVVPAEDT-LSRKL 192
Query: 272 AILQKQINENADSVHAYIVFKSEQSTEAALAFNM---AVIGGNHIRLDRACPPRKKLKGE 328
A ++++I+ N ++AY+VFK E+ AL + V G HIR+D A K
Sbjct: 193 AAIKRKIHPNVKYINAYVVFKEERDAVKALNYKRNGTEVASGFHIRVDSAS------KNS 246
Query: 329 DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVL 388
L+D K++VF+GNL +D+ D + + F D V AVR++R +GKG YVL
Sbjct: 247 ---LHDNKRSVFLGNLAYDISDSAVREHFADCGD----VVAVRIVRDRQSGMGKGFGYVL 299
Query: 389 FKTREAANLVIKRRNLKLRDRELRLSHA-QQNCTPSKRKDVAP 430
F+ +A +L +K N L R+LR+ ++ P + P
Sbjct: 300 FENTDAVHLALKLNNSDLMGRKLRVKRCVEKGRAPQRSTTSRP 342
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 301 (111.0 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 90/263 (34%), Positives = 143/263 (54%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N + +++EE +E RT+FVGNLP+ KK L F ++G+I+SVR RS+
Sbjct: 163 NPRRKIQTNKEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPA 218
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPR 322
+ + +K A ++++I+ + +++AY+VFK E + AL N A I G IR+D A
Sbjct: 219 EGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAAAKALERNGAQIADGFRIRVDLA---- 274
Query: 323 KKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRV 380
+ D K++VFVGNLP+ V++ + + F CG SV AVR++R P V
Sbjct: 275 SETSSRD------KRSVFVGNLPYKVEESAVEKHFLDCG------SVVAVRIVRDPVTGV 322
Query: 381 GKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA------QQNCTP-----SKRKDVA 429
G+G YVLF+ +A +L +K N +L R+LR+ + +QN P +K KD
Sbjct: 323 GRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSIHKEKLKQNSNPGLKNVNKSKD-- 380
Query: 430 PAVNSPPKKFVLDSRTLGSGNRS 452
+N P K V S++L G ++
Sbjct: 381 -GLNFPSKN-VQRSKSLYVGEKA 401
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 300 (110.7 bits), Expect = 6.3e-25, P = 6.3e-25
Identities = 85/244 (34%), Positives = 138/244 (56%)
Query: 204 NETEDMLV-HRKEEGFDDEGKLL---RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRS 259
++TED +V RK+ + E + L RT+FVGNLP+ KK L F ++G+I+SVR RS
Sbjct: 159 DDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRS 218
Query: 260 VPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRA 318
+ + + +K A ++++I+ + +++AY+VFK E + AL N A I G IR+D A
Sbjct: 219 LIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLA 278
Query: 319 CPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHP 376
+ D K++VFVGNLP+ V++ I + F CG S+ AVR++R
Sbjct: 279 ----SETSSRD------KRSVFVGNLPYKVEESAIEKHFLDCG------SIMAVRIVRDK 322
Query: 377 HMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNCTPSKRKDVAPAVN--S 434
+GKG YVLF+ ++ +L +K N +L R+LR+ + N K+++ P + S
Sbjct: 323 MTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSV-NKEKFKQQNSNPRLKNVS 381
Query: 435 PPKK 438
PK+
Sbjct: 382 KPKQ 385
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 295 (108.9 bits), Expect = 3.0e-24, P = 3.0e-24
Identities = 82/249 (32%), Positives = 136/249 (54%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N+ + + ++++EE +E RT+FVGNLP+ KK L F ++G+IDSVR RS+
Sbjct: 167 NQRKKIEINQEEEKLKNE----RTVFVGNLPVTCNKKKLKSFFREYGQIDSVRFRSLIPA 222
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPR 322
+ + +K A ++++I+ + ++AY+VFK E S AL N A I G IR+D A
Sbjct: 223 EGTLSKKLAAIKRKIHPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLA---- 278
Query: 323 KKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRV 380
+ D K++VFVGNLP+ V++ + + F CG S+ AVR++R V
Sbjct: 279 SETSSRD------KRSVFVGNLPYKVEESAVEEHFLDCG------SIVAVRIVRDRVTGV 326
Query: 381 GKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA--QQNCTPSKRKDVAPAVNSPPKK 438
G+G YVLF+ +A +L +K N +L R+LR+ + ++ P+ + V P +
Sbjct: 327 GRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSVNKEKLKPNSNPSLKN-VGKPKEG 385
Query: 439 FVLDSRTLG 447
S+ +G
Sbjct: 386 LNSASKNVG 394
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 290 (107.1 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 75/214 (35%), Positives = 116/214 (54%)
Query: 226 RTIFVGNLPLKV--KK---KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
+T+FV NLP +V K K L K F +FG +DS+R RS+ + IPRK A +K+ +
Sbjct: 164 KTVFVNNLPARVVTNKGDYKDLTKHFRQFGAVDSIRFRSLAFSEA-IPRKVAFFEKKFHS 222
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
D+V+AYIVF+ S +AL+ N + H+R+D P + D K+ VF
Sbjct: 223 ERDTVNAYIVFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQ---------DTKRCVF 273
Query: 341 VGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLV 398
VGNL F+ ++E +++ F CG S++ VR++R P +GKG AY+ FK +
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCG------SIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKA 327
Query: 399 IKRRNLKLRD-RELRLSHAQ----QNCTPSKRKD 427
+ K+ + R LR+ A+ ++ T SKR D
Sbjct: 328 LLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRGD 361
>UNIPROTKB|J9NU83 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 EMBL:AAEX03002684
Ensembl:ENSCAFT00000043962 Uniprot:J9NU83
Length = 344
Score = 256 (95.2 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 69/190 (36%), Positives = 109/190 (57%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N+ + + ++++EE +E RT+FVGNLP+ KK L F ++G+IDSVR RS+
Sbjct: 164 NQRKKIEINQEEEKLKNE----RTVFVGNLPVTCNKKKLKSFFREYGQIDSVRFRSLIPA 219
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPR 322
+ + +K A ++++I+ + ++AY+VFK E S AL N A I G IR+D A
Sbjct: 220 EGTLSKKLAAIKRKIHPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLA---- 275
Query: 323 KKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRV 380
+ D K++VFVGNLP+ V++ + + F CG S+ AVR++R V
Sbjct: 276 SETSSRD------KRSVFVGNLPYKVEESAVEEHFLDCG------SIVAVRIVRDRVTGV 323
Query: 381 GKGIAYVLFK 390
G+G YVLF+
Sbjct: 324 GRGFGYVLFE 333
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 262 (97.3 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 60/188 (31%), Positives = 106/188 (56%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVGN+PL + +K++ + F FG I SVR+R++ + K+ ++ L ++N+ S+
Sbjct: 144 TVFVGNMPLTMNEKSVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLT 203
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F +E+S E AL +N + + IR+D+ +K+ G+D +FVGNLPF
Sbjct: 204 FYVKFGAEESVEKALKYNGTKLDDHVIRVDKVGSKKKEF-GKDM-------AIFVGNLPF 255
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKL 406
++ ++ + F VEAVR++R GKG A+V FK + +L + +K+
Sbjct: 256 EITEDALITFFSAQI---GPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALSMETIKM 312
Query: 407 RDRELRLS 414
R+LR++
Sbjct: 313 EKRDLRIT 320
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 218 (81.8 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 54/164 (32%), Positives = 95/164 (57%)
Query: 252 IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGG 310
I+S+R RS+ D +PRK A +Q++ +++ D+++AYIV+K++ + + N V
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 311 NHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVE 368
+H+R+D P AP +D K+++FVGNL F+ +E +++ F CG +E
Sbjct: 262 HHLRVDSVAHP--------AP-HDKKRSIFVGNLDFEEIEESLWKHFEPCG------DIE 306
Query: 369 AVRVIRHPHMRVGKGIAYVLFKTREAAN--LVIKRRNLKLRDRE 410
VR+IR +GKG AYV FK ++ N L++ + +K + +E
Sbjct: 307 YVRIIRDSKTNMGKGFAYVQFKDLQSVNKALLLNEKPMKSQKQE 350
Score = 56 (24.8 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 219 DDEGKLLRTIFVGN-LPLKVKKKTLIKEFIK-FG 250
D+ K RT+F+GN L + K + KEF K FG
Sbjct: 141 DELEKAERTVFIGNILSTVITSKKVYKEFKKLFG 174
Score = 56 (24.8 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 2 MDKKKSEDNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFNP 61
+D+KK E S+ +F++ G I N+ V S + K++ R +++ + E +
Sbjct: 12 IDEKKIE----SSVDKLFSSSCGPI-NKLEVKSKTRTVLPDSKKRERAAEADQEEKEASK 66
Query: 62 MXXXXXXXXXXELKKIKKTRQEKPNPDLPDAE 93
L K+KK ++ K N + D E
Sbjct: 67 PDVSDEQTEEVALPKVKKAKKSKRNDEDEDLE 98
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 202 (76.2 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 63/197 (31%), Positives = 107/197 (54%)
Query: 254 SVRIRSVPII-DTKIPRKG------AILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306
+V + ++P+ + KIP +G A ++++I+ + +++AY+VFK E + AL N A
Sbjct: 184 TVFVGNLPVTCNKKIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGA 243
Query: 307 VIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDL 363
I G IR+D A + D K++VFVGNLP+ V++ I + F CG
Sbjct: 244 QIADGFRIRVDLA----SETSSRD------KRSVFVGNLPYKVEESAIEKHFLDCG---- 289
Query: 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNCTPS 423
S+ AVR++R +GKG YVLF+ ++ +L +K N +L R+LR+ + N
Sbjct: 290 --SIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSV-NKEKF 346
Query: 424 KRKDVAPAVN--SPPKK 438
K+++ P + S PK+
Sbjct: 347 KQQNSNPRLKNVSKPKQ 363
Score = 69 (29.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 204 NETEDMLV-HRKEEGFDDEGKLL---RTIFVGNLPLKVKKK 240
++TED +V RK+ + E + L RT+FVGNLP+ KK
Sbjct: 157 DDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKK 197
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 215 (80.7 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 59/208 (28%), Positives = 105/208 (50%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVGNLP+ K+ L+K F +G + S+R+R+ K KQ + A S++
Sbjct: 156 TVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAG-------GKQLFKHKQ-RKVAGSLN 207
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRK--KLKGEDAPLYDIKKTVFVGNL 344
AY+V + + + ALA N + NH+R+ A K + K + D K+T+FVG+L
Sbjct: 208 AYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSL 267
Query: 345 PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNL 404
+ +E++ ++F + ++ +R ++ KG+AYV F+ +A L ++
Sbjct: 268 KYSATEEQLREIFSSCGE----IDYIRCLQDGDKGC-KGVAYVCFQKPDAVGLALELNQT 322
Query: 405 KLRDRELRLSHAQQNCTPSKR-KDVAPA 431
L DR + + Q +K+ +D A A
Sbjct: 323 LLDDRPINVERYQVKKLGAKQVRDAAAA 350
>ASPGD|ASPL0000048939 [details] [associations]
symbol:AN1452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
EMBL:AACD01000022 KO:K14837 RefSeq:XP_659056.1
ProteinModelPortal:Q5BDC8 STRING:Q5BDC8
EnsemblFungi:CADANIAT00008065 GeneID:2875093 KEGG:ani:AN1452.2
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR Uniprot:Q5BDC8
Length = 520
Score = 124 (48.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 251 EIDSVRIRSVPIIDT-KIPRKGAILQKQINENAD-SVHAYIVFKSEQSTEAA-LAFNMAV 307
+IDS+R RS KIP++ A +++I+++ S +AY V+ + Q+ + A A N V
Sbjct: 231 KIDSIRFRSTAFASGGKIPKRAAFAKQEIHDDTTPSTNAYAVYSTAQAAKKAPAALNGTV 290
Query: 308 IGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
+ H+R+D P K D K+ VFVGNL F
Sbjct: 291 VLDRHLRVDNVAHPAK---------VDHKRCVFVGNLDF 320
Score = 91 (37.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 40/154 (25%), Positives = 62/154 (40%)
Query: 366 SVEAVRVIRHPHMRVGKGIAYVLFKTR---EAANLVIKRRNLKLRDRELRLSHAQQNCTP 422
+VE+VRV+R RVGKG AYV F + E A L+ +R L R+LR+ A++
Sbjct: 366 NVESVRVVRDRSTRVGKGFAYVQFYDQNCVEEALLLNDKRFPPLLPRKLRVVRAKKVAKK 425
Query: 423 SKRKDVAPAVNSPPKKFVLDSRTLGSGNRSNSKVAMSYQGLQASKSCTQXXXXXXXXXXX 482
S AP S + LG + + K A + + S +
Sbjct: 426 SVETTGAPK-GSDRTLQGRAGKLLGRSSEARLKAAAK-KSISQSSLVFEGNRATADGSSR 483
Query: 483 XXXXXRTQKGERPKVQPEKRPAVALRKARAKAPK 516
+++ + K K+ A A + A K K
Sbjct: 484 IRVRTKSRGSKAKKDSRSKKRAAAYKAAGGKKAK 517
>UNIPROTKB|A8NJ74 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 KO:K14837 GeneTree:ENSGT00390000011249
CTD:23029 HOVERGEN:HBG052167 HOGENOM:HOG000015414 EMBL:DAAA02061464
EMBL:BC109866 IPI:IPI00906924 RefSeq:NP_001103552.1
UniGene:Bt.46148 Ensembl:ENSBTAT00000057151 GeneID:537542
KEGG:bta:537542 OMA:ASESSSX NextBio:20877156 Uniprot:A8NJ74
Length = 272
Score = 156 (60.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/97 (34%), Positives = 62/97 (63%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N+ + + ++++EE +E RT+FVGNLP+ KK L F ++G+I+SVR RS+
Sbjct: 167 NQRKKIQINQEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPA 222
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300
+ + +K A ++++I+ + +++AY+VFK E + A
Sbjct: 223 EGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKA 259
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 134 (52.2 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 52/216 (24%), Positives = 92/216 (42%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFI---KFGEIDSVRIRSVPIIDTKIPRKGAILQK 276
DE K +++GNL K L++ FI K E + R+ I +PR A K
Sbjct: 121 DENKY--GVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAA---K 175
Query: 277 QINENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIK 336
N + Y+ FK+ + +A L + + + G ++ + + + +D
Sbjct: 176 NSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKN 235
Query: 337 ---KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRE 393
+ +FVGNL FDV D+ + + F D+ +R+ KG A++ FK E
Sbjct: 236 PPSRILFVGNLSFDVTDDLLRKHFQHCGDIVK----IRMATFEDSGKCKGFAFIDFKNEE 291
Query: 394 AANLVIKRRNL-KLRDRELRLSHAQQNCTPSKRKDV 428
+ +K ++ K+ R LR+ + + RK V
Sbjct: 292 GSTNALKDKSCRKIAGRPLRMEYGEDRSKRQVRKKV 327
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 129 (50.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 37/171 (21%), Positives = 87/171 (50%)
Query: 257 IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL 315
+++ P+++ +P+ +++N + +I ++SE+ + A+ NM + G IR+
Sbjct: 46 VQAGPVVNVYVPKDRVT---NLHQN----YGFIEYRSEEDADYAIKVLNMIKLHGKPIRV 98
Query: 316 DRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH 375
++A +K L D+ +F+GNL DV ++ +Y F + S+ +++R
Sbjct: 99 NKASQDKKSL--------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNP---KIMRD 147
Query: 376 PHMRVGKGIAYVLFKTREAANLVIKRRNLK-LRDRELRLSHAQQNCTPSKR 425
P +G ++ + + EA++ I+ + L +R++ +S+A + T +R
Sbjct: 148 PDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGER 198
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 123 (48.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 54/197 (27%), Positives = 90/197 (45%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPR-KGAILQKQINENADSV 285
T+FVG L V + L +EF ++G I R+ I+D + R KG
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARV----IMDGQSGRSKG-------------- 305
Query: 286 HAYIVFKSEQSTEAALAFN-MAVIGGNHIRLDRACP----PR---KKLKGEDAP-LYDIK 336
+ Y+ F++ ++ +AA+A N I G + LD + P P+ ++ G L +
Sbjct: 306 YGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPS 365
Query: 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN 396
TVFVGNL F+ ++++ F G D++S +R+ P KG YV F ++A
Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQS----IRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 397 LVIKRRNLKLRDRELRL 413
++ + R RL
Sbjct: 422 KCVEMNGHFIAGRPCRL 438
Score = 50 (22.7 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 16/73 (21%), Positives = 34/73 (46%)
Query: 75 KKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEPNGTIENEIKKEHSS 134
KK + + + + ++E +++++ S S++S S E ++ E KKE SS
Sbjct: 79 KKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSS 138
Query: 135 NVGSESYLNRQKQ 147
S S +++
Sbjct: 139 ESSSSSESEEEEE 151
Score = 43 (20.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 4 KKKSEDNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFNPMX 63
K K E S+P ++ ++ SS S+S + ES S+E+ES +
Sbjct: 53 KSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES-ESSSSESESSSSESE 111
Query: 64 XXXXXXXXXELKK--IKKTRQEK 84
E ++ I KT ++K
Sbjct: 112 SSSSESSSSESEEEVIVKTEEKK 134
Score = 43 (20.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 27/148 (18%), Positives = 44/148 (29%)
Query: 78 KKTRQEKPNPDLPDAEGAATKTLSLSNK---STKLIYPRSILGFEPNGTIENEIKKEHSS 134
KK EKP+ + AA + S+K S K + P + + +KK+ S
Sbjct: 19 KKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPS-KKSVKKQKKS 77
Query: 135 NVGSESYLNRQKQNSNFSVXXXXXXXXXXXXXXXXXXXXXXYVEKKYGVIAXXXXXXXXX 194
ES + ++S+ E + VI
Sbjct: 78 KKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESS 137
Query: 195 XXXXXXXADNETEDMLV--HRKEEGFDD 220
E E+ +V K+E D
Sbjct: 138 SESSSSSESEEEEEAVVKIEEKKESSSD 165
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 105 (42.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 26/90 (28%), Positives = 53/90 (58%)
Query: 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLV 398
++VG+L +DV +E+ F ++E EA ++ R KG A++ + T++AA
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIE---EAKLIMDRETGR-SKGFAFITYGTQDAAQEA 75
Query: 399 IKRRN-LKLRDRELRLSHAQQNCTPSKRKD 427
+ + N + L+ R++R++ A++N T +R+D
Sbjct: 76 VSKANGIDLQGRKIRVNIAREN-TGDRRRD 104
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 105 (42.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 26/90 (28%), Positives = 53/90 (58%)
Query: 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLV 398
++VG+L +DV +E+ F ++E EA ++ R KG A++ + T++AA
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIE---EAKLIMDRETGR-SKGFAFITYGTQDAAQEA 75
Query: 399 IKRRN-LKLRDRELRLSHAQQNCTPSKRKD 427
+ + N + L+ R++R++ A++N T +R+D
Sbjct: 76 VSKANGIDLQGRKIRVNIAREN-TGDRRRD 104
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 114 (45.2 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 37/151 (24%), Positives = 70/151 (46%)
Query: 276 KQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYD 334
K I E + +A+I + + Q+ AL A N + I+++ A P + K + + +
Sbjct: 37 KIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHH 96
Query: 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF-KTRE 393
I FVG+L +++ E + + F ++ + R++R PH KG A+V F K E
Sbjct: 97 I----FVGDLSPEIETETLREAFAPFGEISNC----RIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 394 AANLVIKRRNLKLRDRELRLSHAQQNCTPSK 424
A N + + R +R + + + P +
Sbjct: 149 AENAIQAMNGQWIGSRSIRTNWSTRKLPPPR 179
Score = 56 (24.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVP 261
+T++VGNL V + LI F G + S +I P
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP 42
>WB|WBGene00007111 [details] [associations]
symbol:B0035.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 EMBL:Z73102
GeneTree:ENSGT00550000074656 HSSP:P33240 InterPro:IPR008669
Pfam:PF05391 eggNOG:NOG321927 OMA:SQAVMKM PIR:T18650
RefSeq:NP_502136.1 ProteinModelPortal:Q17430 SMR:Q17430
STRING:Q17430 PaxDb:Q17430 EnsemblMetazoa:B0035.12.1
EnsemblMetazoa:B0035.12.2 EnsemblMetazoa:B0035.12.3 GeneID:178053
KEGG:cel:CELE_B0035.12 UCSC:B0035.12.1 CTD:178053 WormBase:B0035.12
HOGENOM:HOG000017964 InParanoid:Q17430 NextBio:899522
Uniprot:Q17430
Length = 836
Score = 129 (50.5 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 48/151 (31%), Positives = 75/151 (49%)
Query: 281 NADSVH---AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKK 337
N+D VH AY+V +++Q + AL + + G + + A P K++ + + + K
Sbjct: 626 NSDLVHRGFAYVVMENDQKAQQALLKDRVPVKGRPMFIS-ANDPEKRVGFKFSTTLE-KS 683
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN- 396
VFV N+ F D+E+ LF +V +VR + H + KGIA+V F T +A
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFG----TVTSVRRVTHKDGKP-KGIAFVDFDTEASAQK 738
Query: 397 LVIKRRNLKLRDRELRLSHAQQNCTPSKRKD 427
V L LR+REL + A N P +KD
Sbjct: 739 CVASGDKLMLRERELEV--ALSN--PPVKKD 765
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLV 398
+FVGNL DV DE +YQ F ++ S V+ +V+R + +G +V FK +
Sbjct: 32 LFVGNLGNDVNDESLYQAF---SEYPSLVKT-KVVRDREGKT-RGFGFVSFKDSDQFLKA 86
Query: 399 IKRRNLK-LRDRELRLSHAQQNCTPSKRKDVAPAVNSPPKKFVLDSRTLGSGNRSNSKVA 457
+ +N K + R ++LS A + P++ + ++S + L SRT+ GNR K+
Sbjct: 87 WREKNGKYIGSRPVKLSRATSDVKPNEVNE--KTIDSKIRNS-LYSRTIHHGNRVQKKIK 143
Query: 458 MSYQGLQASKS 468
+ G +SKS
Sbjct: 144 NKH-GKNSSKS 153
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 122 (48.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 61/249 (24%), Positives = 100/249 (40%)
Query: 202 ADNETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVP 261
ADN + M +EE ++E T+F+ NL ++ L + F K G + S I
Sbjct: 706 ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISK-- 763
Query: 262 IIDTKIPRKGAILQKQINENADSVHAYIVF-KSEQSTEAALAFNMAVIGGN--HIRL-DR 317
K + G +L ++ + K EQ+ +A V+ G+ +R+ +R
Sbjct: 764 ----KKNKAGVLLSMGFG--------FVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Query: 318 ACPPRKKL-KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376
A P L + + P + V N+PF EI +LF +L++ +R P
Sbjct: 812 ATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKT-------VRLP 864
Query: 377 HMRVG----KGIAYVLFKTREAANLVIKR--RNLKLRDRELRLSHAQQNCT-PSKRKDVA 429
G +G +V F T++ A + L R L L A T + R+ A
Sbjct: 865 KKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTA 924
Query: 430 PAVNSPPKK 438
+ PPKK
Sbjct: 925 AHFHEPPKK 933
Score = 52 (23.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 4 KKKSEDNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQ 46
KK+++D SA S + TLF G PN VA ++ N K Q
Sbjct: 499 KKEAQDKANSASSHNWNTLFMG-PN--AVADAIAQKYNATKSQ 538
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
Identities = 33/142 (23%), Positives = 72/142 (50%)
Query: 286 HAYIVFKSEQSTEAALAF-NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL 344
+ ++ F SE+ + A+ NM + G IR+++A K L D+ +F+GNL
Sbjct: 13 YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL--------DVGANIFIGNL 64
Query: 345 PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNL 404
++ ++ +Y F + ++ +++R P KG A++ F + +A++ I+ N
Sbjct: 65 DPEIDEKLLYDTFSAFGVI---LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 121
Query: 405 K-LRDRELRLSHAQQNCTPSKR 425
+ L +R + +S+A + + +R
Sbjct: 122 QYLCNRPITVSYAFKKDSKGER 143
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 44/200 (22%), Positives = 90/200 (45%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN-----EN 281
TI+ G L KV + L + F++ G + + +P I+ +N +
Sbjct: 14 TIYAGGLDDKVSETLLWELFVQAGPVGKSGHTCI------VPSSSLIVMLAVNVHMPKDR 67
Query: 282 ADSVH---AYIVFKSEQSTEAALAF-NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKK 337
+H ++ F SE+ + + NM + G IR+++A +K L D+
Sbjct: 68 VTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNL--------DVGA 119
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANL 397
+F+GNL +V ++ +Y F + ++ +++R P K A++ F + EA++
Sbjct: 120 NIFIGNLDVEVDEKLLYDTFSAFGVI---LQTPKIMRDPETGKSKSFAFINFASFEASDA 176
Query: 398 VIKRRNLK-LRDRELRLSHA 416
+ N + L +R + +S+A
Sbjct: 177 AMDAMNGQYLCNRPISVSYA 196
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 88 (36.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 32/133 (24%), Positives = 69/133 (51%)
Query: 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD 347
+++FK +S + + + G I RA K +K ++ P +KK +FVG L D
Sbjct: 90 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA----KAMKTKE-P---VKK-IFVGGLSPD 140
Query: 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR--NLK 405
+E+I + F G ++ES +E + + + R +G ++ FK E +++++ N+
Sbjct: 141 TPEEKIREYFGGFGEVES-IE-LPMDNKTNKR--RGFCFITFKEEEPVKKIMEKKYHNVG 196
Query: 406 LRDRELRLSHAQQ 418
L E++++ +++
Sbjct: 197 LSKCEIKVAMSKE 209
Score = 72 (30.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 202 ADNETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVP 261
A++E + + EE DEGK+ F+G L KK L F KFGE+ ++ P
Sbjct: 28 AESEGAKIDASKNEE---DEGKM----FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDP 80
Query: 262 IIDTKIPRKGAILQKQINENADSV 285
I + G +L K+ +E+ D V
Sbjct: 81 ITG-RSRGFGFVLFKE-SESVDKV 102
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392
Y +++GNL FD+ +++I C ++ V+ + ++R KG A++ ++ +
Sbjct: 27 YSDSAYIYIGNLDFDLNEDDI---LCVFSEFGEPVD-INLVRDKETGKSKGFAFLKYEDQ 82
Query: 393 EAANLVIKRR-NLKLRDRELRLSHAQQNCTPSKRKDVAPAVNSPPKKFVLDSRTLGSGN 450
+ L + N+KL DR +R+ H P K K+ A V L T+ + N
Sbjct: 83 RSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQKEKEPANLVPLGESGSSLSVSTINTSN 141
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 113 (44.8 bits), Expect = 0.00050, P = 0.00050
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAA 395
K TV+V N+PF + + ++++L C V V +++ H R+ KG+A+VLF RE+A
Sbjct: 9 KSTVYVSNIPFSLTNSDMHKL-CSKY---GKVVKVTIVKDKHTRMSKGVAFVLFLDRESA 64
Query: 396 -NLVIKRRNLKLRDRELRLSHAQQN 419
N N +L R ++ S A N
Sbjct: 65 YNCSRSLNNKQLFGRMVKASIAIDN 89
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 96 (38.9 bits), Expect = 0.00052, P = 0.00052
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAA 395
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF +++A
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
Query: 396 NLVIKRRNLK 405
+ N K
Sbjct: 65 QNCTRAINNK 74
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 99 (39.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 37/146 (25%), Positives = 62/146 (42%)
Query: 276 KQINENADSVHAYIVFKSEQSTEAALAFNMAVIGGN-HIRLDRACPPRKKLKGEDAPLYD 334
K +N N V A+I F E+ + A+ +N G +R++ A K GE P
Sbjct: 106 KILNSNPQRVAAFITFADEKGRDTAITYNGKDFNGQGSLRINGA--NSKPSDGEGEPT-- 161
Query: 335 IKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392
T+ N+ F V + + + F CG S+ V + + KG A+V F +
Sbjct: 162 ---TIVCRNIAFTVDETLVKEFFSKCG------SISRVSLPVYEDSGRLKGFAFVSFDSE 212
Query: 393 EAANLVIKRRNLKLRDRELRLSHAQQ 418
+A I K RE+++ +Q+
Sbjct: 213 DAVEKAIALTGTKFEGREIQVERSQR 238
Score = 58 (25.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 213 RKEEGFDDEGKLLRT-----IFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257
+KE DE +T +FVG LP V + L + F + G+I +++I
Sbjct: 58 KKESAAKDESSNTKTDDDLKVFVGQLPSGVTEYDLKEYFSECGDISNIKI 107
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 108 (43.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 49/196 (25%), Positives = 83/196 (42%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVG L + L +EF G + R+ I+++ ++ +
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARV---------------IMERATGKSRG--Y 211
Query: 287 AYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRAC--PPRKKLKGEDAPLY-DIKK----T 338
Y+ F+S+ + E AL I G I LD + P K + A Y D + T
Sbjct: 212 GYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT 271
Query: 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLV 398
+F+GNL F+ + ++ +F ++ S RV HP + KG YV F + + A
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISC----RVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 399 IKRRNLK-LRDRELRL 413
++ N + + R RL
Sbjct: 328 LEAMNGEYIEGRPCRL 343
Score = 52 (23.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 73 ELKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEPNGTIENEIKKEH 132
E K KK +E + + + ++ ++ S + S S G + + + E E++K+
Sbjct: 16 EEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKE 75
Query: 133 SSNVGSESYLNRQKQNS 149
SS+ S+ +++ +S
Sbjct: 76 SSSDESDDEDKKEESSS 92
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 108 (43.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 49/196 (25%), Positives = 83/196 (42%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVG L + L +EF G + R+ I+++ ++ +
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARV---------------IMERATGKSRG--Y 211
Query: 287 AYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRAC--PPRKKLKGEDAPLY-DIKK----T 338
Y+ F+S+ + E AL I G I LD + P K + A Y D + T
Sbjct: 212 GYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT 271
Query: 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLV 398
+F+GNL F+ + ++ +F ++ S RV HP + KG YV F + + A
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISC----RVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 399 IKRRNLK-LRDRELRL 413
++ N + + R RL
Sbjct: 328 LEAMNGEYIEGRPCRL 343
Score = 52 (23.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 73 ELKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEPNGTIENEIKKEH 132
E K KK +E + + + ++ ++ S + S S G + + + E E++K+
Sbjct: 16 EEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKE 75
Query: 133 SSNVGSESYLNRQKQNS 149
SS+ S+ +++ +S
Sbjct: 76 SSSDESDDEDKKEESSS 92
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 99 (39.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 36/164 (21%), Positives = 73/164 (44%)
Query: 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD 347
++ + + + N +IG + + R P R + D + KK +FVG +P
Sbjct: 87 FVTYADSSVVDKVIQDNHIIIG-KQVEIKRTIP-RGSMSSND---FKTKK-IFVGGIPSS 140
Query: 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN-LVIKRRNLKL 406
V D+E + F +L+ +++R +G +V +++ + + L+ K ++L
Sbjct: 141 VDDDEFKEFFMQFGELKEH----QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIEL 196
Query: 407 RDRELRLSHAQQNCTPSKRKDVAPAVNSPPKKFVLDSRT-LGSG 449
++ + A+ P K +V +P K+F DSR+ G G
Sbjct: 197 SGTQVEIKKAE----PKKPN----SVTTPSKRFG-DSRSNFGGG 231
Score = 62 (26.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 217 GFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSV 255
G D GK IFVG L + +K F K+GEI DSV
Sbjct: 37 GVDSAGK----IFVGGLARETTSAEFLKHFGKYGEITDSV 72
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 103 (41.3 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAA 395
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF +++A
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
Query: 396 -NLVIKRRNLKLRDRELRLSHAQQN 419
N N +L R ++ S A N
Sbjct: 65 LNCTRAINNKQLFGRVIKASIAIDN 89
Score = 47 (21.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 490 QKGERPKVQPEKRPAVALRKARAKAPKDVWVSRQAGMKRKMESQTPEISQ 539
++GE P + + A+A ++A+ + + W G +S+ P I +
Sbjct: 157 EEGEDPALDSLSQ-AIAFQQAKIEEEQSKWRPNPGGPSTSDDSRRPRIKK 205
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 103 (41.3 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAA 395
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF +++A
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
Query: 396 -NLVIKRRNLKLRDRELRLSHAQQN 419
N N +L R ++ S A N
Sbjct: 65 LNCTRAINNKQLFGRVIKASIAIDN 89
Score = 47 (21.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 490 QKGERPKVQPEKRPAVALRKARAKAPKDVWVSRQAGMKRKMESQTPEISQ 539
++GE P + + A+A ++A+ + ++ W G +S+ P I +
Sbjct: 157 EEGEDPALDSLSQ-AIAFQQAKIEEEQNKWRPSTGGPSTSDDSRRPRIKK 205
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 118 (46.6 bits), Expect = 0.00073, P = 0.00073
Identities = 55/195 (28%), Positives = 83/195 (42%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPR-KG-AILQKQINENAD 283
T+FVGNL V L +EF KF G + S R+ I D + R KG + E A+
Sbjct: 240 TLFVGNLSWNVDDAMLAEEF-KFCGTVTSARV----ITDRESGRSKGFGYVDFATPEEAE 294
Query: 284 SVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGED-APLYDIKKTVFVG 342
H E + F+ G + A R K G+ +P D T+FVG
Sbjct: 295 KAHGEKQGAFIDGREIKVDFST----GKATNSNDAAGARAKKYGDTVSPESD---TLFVG 347
Query: 343 NLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402
NLPFD ++ + F + + V+++R+ KG YV F + E A ++
Sbjct: 348 NLPFDADEDSVGAFFSEV----AEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 403 N-LKLRDRELRLSHA 416
N + R RL ++
Sbjct: 404 NGQSINGRNCRLDYS 418
>UNIPROTKB|G3MZL2 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 EMBL:DAAA02011496
RefSeq:NP_001178319.1 UniGene:Bt.32577 Ensembl:ENSBTAT00000065989
GeneID:507132 KEGG:bta:507132 NextBio:20867915 Uniprot:G3MZL2
Length = 610
Score = 119 (46.9 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 37/127 (29%), Positives = 60/127 (47%)
Query: 322 RKKLKGEDAPLYDIK--KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379
+KK K P D+ KTVF+ NL FD ++E++ +L DL+ VR++ HP
Sbjct: 170 KKKRKKRKLPS-DVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKY----VRIVLHPDTE 224
Query: 380 VGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNCTPSKRKDVAPAVNSPPKKF 439
KG A+ F T+EAA ++ + + L+L Q + +D A + + K
Sbjct: 225 HSKGCAFAQFMTQEAAQKCLEAASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKK 284
Query: 440 VLDSRTL 446
+R L
Sbjct: 285 PTGTRNL 291
Score = 44 (20.5 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEI 252
T+FVG LP + + L + F + G +
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPV 30
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 548 484 0.00080 119 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 608 (65 KB)
Total size of DFA: 239 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.78u 0.10s 41.88t Elapsed: 00:00:02
Total cpu time: 41.79u 0.10s 41.89t Elapsed: 00:00:02
Start: Sat May 11 10:16:27 2013 End: Sat May 11 10:16:29 2013