BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008920
(548 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 121/212 (57%), Gaps = 26/212 (12%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K A ++++ + + S+
Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242
Query: 286 HAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL 344
+AY+VFK E++ AL N A I G IR+D A + K++VFVGNL
Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASR----------DKRSVFVGNL 292
Query: 345 PFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402
P+ V + + + F CG S+ AVR++R+P VG+G YVLF+ +A +L +K
Sbjct: 293 PYRVDESALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 346
Query: 403 NLKLRDRELRLSHA-------QQNCTPSKRKD 427
N +L R+LR+ + QQN PS +KD
Sbjct: 347 NSELMGRKLRVMRSVNKEKLKQQNSNPSVKKD 378
>sp|Q5AHI7|NOP12_CANAL Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=NOP12 PE=3 SV=1
Length = 454
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 23/209 (11%)
Query: 226 RTIFVGNLPLKVKKKTLIKE-----FIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
RT+FVGN+P V +I + F +G+IDS+R RS+ D +PRK A +K +++
Sbjct: 159 RTVFVGNVPADVITSKIIAKNFKNLFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHK 217
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
+ DSV+AYIV+K + ++ AA N V +H+R+D P AP D K+T+F
Sbjct: 218 SRDSVNAYIVYKEKPASIAAKELNATVFEDHHLRVDHVSHP--------AP-KDNKRTIF 268
Query: 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN--LV 398
VGNL F+ K+E +++ F L+ VE+VR+IR +GKG A V FK + N L+
Sbjct: 269 VGNLDFEEKEETLWKYFNS--KLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALL 326
Query: 399 IKRRNLKL----RDRELRLSHAQQNCTPS 423
+ + L+ + R+LR+S A+ N PS
Sbjct: 327 LNDKPLETGTQKKGRKLRISRAKSNAKPS 355
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 134/243 (55%), Gaps = 30/243 (12%)
Query: 194 GVGEKRKKADNETEDMLV-HRKEEGFDDEGKLL---RTIFVGNLPLKVKKKTLIKEFIKF 249
GV +K ++TED +V RK+ + E + L RT+FVGNLP+ KK L F ++
Sbjct: 149 GVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEY 208
Query: 250 GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG 309
G+I+SVR RS+ + + +K A ++++I+ + +++AY+VFK E + AL N A I
Sbjct: 209 GQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIA 268
Query: 310 -GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESS 366
G IR+D A + K++VFVGNLP+ V++ I + F CG S
Sbjct: 269 DGFRIRVDLASETSSR----------DKRSVFVGNLPYKVEESAIEKHFLDCG------S 312
Query: 367 VEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA-------QQN 419
+ AVR++R +GKG YVLF+ ++ +L +K N +L R+LR+ + QQN
Sbjct: 313 IMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQQN 372
Query: 420 CTP 422
P
Sbjct: 373 SNP 375
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 19/191 (9%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K A ++++ + + S+
Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSI 248
Query: 286 HAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL 344
+AY+VFK E + AL N A I G IR+D A + K++VFVGNL
Sbjct: 249 NAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASR----------DKRSVFVGNL 298
Query: 345 PFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402
P+ ++D + + F CG S+ AVR++R+P VG+G YVLF+ +A +L +K
Sbjct: 299 PYKIEDSALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 352
Query: 403 NLKLRDRELRL 413
N +L R+LR+
Sbjct: 353 NSELMGRKLRV 363
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 115/214 (53%), Gaps = 28/214 (13%)
Query: 226 RTIFVGNLPLKV-----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
+T+FV NLP +V K L K F +FG +DS+R RS+ + IPRK A +K+ +
Sbjct: 164 KTVFVNNLPARVVTNKGDYKDLTKHFRQFGAVDSIRFRSLAFSEA-IPRKVAFFEKKFHS 222
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
D+V+AYIVF+ S +AL+ N + H+R+D P + D K+ VF
Sbjct: 223 ERDTVNAYIVFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQ---------DTKRCVF 273
Query: 341 VGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLV 398
VGNL F+ ++E +++ F CG S++ VR++R P +GKG AY+ FK +
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCG------SIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKA 327
Query: 399 IKRRNLKLRD-RELRLSHAQ----QNCTPSKRKD 427
+ K+ + R LR+ A+ ++ T SKR D
Sbjct: 328 LLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRGD 361
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 92/169 (54%), Gaps = 19/169 (11%)
Query: 227 TIFVGNLPLKV-KKKTLIKEF----IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINEN 281
TIFVGN+ +V KT+ F G + SVR RS+ +PRK A + +Q +
Sbjct: 169 TIFVGNVSSEVITDKTVYNNFKALFAAIGTVASVRFRSISFSKL-LPRKVAFISQQFHSK 227
Query: 282 ADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFV 341
D+V+AYIVFK+ +S + AL N +V G H+R+D P + D K+ VFV
Sbjct: 228 RDTVNAYIVFKNVKSVKGALTLNGSVFKGFHMRVDSVAHPGAQ---------DHKRCVFV 278
Query: 342 GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
G L F+ ++E +++ F D VE VR++R P VGKG AYV FK
Sbjct: 279 GALDFEEQEESLWEAFSSCGD----VEYVRIVRDPKTNVGKGFAYVQFK 323
>sp|Q6BTS9|NOP12_DEBHA Nucleolar protein 12 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NOP12 PE=3
SV=2
Length = 462
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 21/207 (10%)
Query: 226 RTIFVGNLPLKV-----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
RT+FVGN+ V K K F ++G+I S+R RS+ D +PRK A +K+++
Sbjct: 159 RTVFVGNVNASVVGSKPMYKKFKKLFSQYGKIQSIRFRSISF-DDAVPRKVAFAKKKLHS 217
Query: 281 NADSVHAYIVF-KSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+ D+++AY+VF + E S + N H+R+D P AP D K+T+
Sbjct: 218 SRDTLNAYVVFAEKEPSLKCVPKLNATEFEHAHLRVDHVAHP--------AP-KDNKRTI 268
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN--L 397
FVGNL F+ K+E +++ F D + VE+VRVIR VGKG A V FK + N L
Sbjct: 269 FVGNLDFEEKEETLWRYFNSKTD--NDVESVRVIRDAKTNVGKGFALVQFKDTLSVNKSL 326
Query: 398 VIKRRNLKL-RDRELRLSHAQQNCTPS 423
++ + + + R+LR+S A+ + PS
Sbjct: 327 LLNDKPMSAEKKRKLRISKAKAHTKPS 353
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 44/213 (20%)
Query: 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKF--------------------GEIDSVRIRSV 260
K RT+FVGN+P + + K + KEF + ++S+R RS+
Sbjct: 133 AKAERTVFVGNVPHEAITDKKVYKEFKQLVAQRKLSKEDEDDEEQKAEKYAVESIRFRSI 192
Query: 261 PIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACP 320
+ +PRK A +Q++++ DSV+AY+V+ +++ AA N +V +H+R D
Sbjct: 193 -AFEEALPRKVAFVQQKLHHTRDSVNAYVVYAEKEAVTAACKLNGSVFHDHHLRFDSVAH 251
Query: 321 PRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHM 378
P AP +D K++VFVGNL F+ +E +++ F CG +E VR++R P
Sbjct: 252 P--------AP-HDRKRSVFVGNLDFEESEESLWKHFMSCG------PIEYVRIVRDPKT 296
Query: 379 RVGKGIAYVLFKTREAANLVIKRRNLKLRDREL 411
VGKG AYV F A+LV + L L D+++
Sbjct: 297 NVGKGFAYVQF-----ADLVSVNKALLLNDKKM 324
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 140/282 (49%), Gaps = 57/282 (20%)
Query: 219 DDEGKLLRTIFVGNLPLKVK-KKTLIKEFIK-FGEID-----------SVRIRSVPIIDT 265
D+ K RTIFVGNL +V K+ K F K F ID S+R RSV D
Sbjct: 105 DEIEKASRTIFVGNLSNEVIISKSTYKLFQKLFNNIDDDDENKKLPIQSIRFRSVSFEDA 164
Query: 266 KIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA--FNMAVIGGNHIRLDRACPPRK 323
+PRK A +Q++++++ SV+AYIV+K + L N V H+R+D P
Sbjct: 165 -LPRKVAFVQQKLHKSRASVNAYIVYKEQSPLLNKLIKRLNGQVFSNRHLRVDSITHP-- 221
Query: 324 KLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVG 381
AP +D +++VFVGNL F+ +E +++ F CG S+E VR++R P +G
Sbjct: 222 ------AP-HDKQRSVFVGNLDFEEDEESLWKHFGACG------SIEYVRIVRDPKTNMG 268
Query: 382 KGIAYVLFKTREAAN--LVIKRR-----NLKLRDRELRLSHAQQNCTPSKRKDVAPAVNS 434
KG AYV F ++ + L++ + N L+ R+LR++ C ++ V P + S
Sbjct: 269 KGFAYVQFNELQSVSKALLLNEKPMISQNEHLKKRKLRVTR----CKNIRK--VEPTLKS 322
Query: 435 PPKKFVLDS---------RTLGSGNRSNSKVAMSYQGLQASK 467
K++ D + L RS ++ +G++A+K
Sbjct: 323 G--KYMTDGQKTKLGRAKKILNKAERSKLLKELTVEGIRATK 362
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 161/348 (46%), Gaps = 80/348 (22%)
Query: 219 DDEGKLLRTIFVGN-LPLKVKKKTLIKEFIK-FGE------------------------- 251
D+ K RT+F+GN L + K + KEF K FG
Sbjct: 141 DELEKAERTVFIGNILSTVITSKKVYKEFKKLFGTNPIAETEESGNEKEEESSKKSDNNE 200
Query: 252 --IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVI 308
I+S+R RS+ D +PRK A +Q++ +++ D+++AYIV+K++ + + N V
Sbjct: 201 FAIESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVF 259
Query: 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESS 366
+H+R+D P AP +D K+++FVGNL F+ +E +++ F CG
Sbjct: 260 QDHHLRVDSVAHP--------AP-HDKKRSIFVGNLDFEEIEESLWKHFEPCG------D 304
Query: 367 VEAVRVIRHPHMRVGKGIAYVLFKTREAAN--LVIKRRNLKL-------------RDREL 411
+E VR+IR +GKG AYV FK ++ N L++ + +K + R+L
Sbjct: 305 IEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALLLNEKPMKSQKQEDENTKKPTKKARKL 364
Query: 412 RLSHA---QQNCTPSKRKDVAPAVNSPPKKFVLDSRTLGSGNRSNSKVAMSYQGLQASKS 468
R+S ++ T D +S + + LG +R+ ++ +GL+A K
Sbjct: 365 RVSRCKNMKKGTTIGTGLDRNGLTDSQRTRAGRAKKILGKADRATLGQEITIEGLRAKKG 424
Query: 469 CTQKKVHSGSSGVVKMKKSRTQKGERPKVQPEKRPAVALRKARAKAPK 516
GS+ +K KK R+ G K ++A +KA+A+ K
Sbjct: 425 -------EGSTH-LKKKKQRSATGRVTK------RSIAFKKAQAEKSK 458
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 146/312 (46%), Gaps = 73/312 (23%)
Query: 226 RTIFVGNLPLKV-KKKTLIKEF-------------------------------IKFGEID 253
RTIF+GN+P +V K + KEF +KF ++
Sbjct: 164 RTIFIGNVPNEVITSKKVYKEFKKLLSKDPRSENDDHDDGEEDEEEEESKTKDVKFN-VE 222
Query: 254 SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF-NMAVIGGNH 312
S+R RS+ + +PRK A + ++++++ DS++AY V+ S + + N V +H
Sbjct: 223 SIRFRSIAF-EEALPRKVAFVHQKLHKSRDSINAYAVYGSSNPVKIMCQYLNGKVFNDHH 281
Query: 313 IRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAV 370
+R+D P +P +D +++VFVGNL F+ +E +++ F CG +E V
Sbjct: 282 LRVDSVTHP--------SP-HDKRRSVFVGNLDFEEVEESLWKHFEPCG------DIEYV 326
Query: 371 RVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRD----RELRLSH------AQQNC 420
R+IR +GKG AYV FK ++ + + K+ + R+LR+S AQ N
Sbjct: 327 RIIRDSKTNMGKGFAYVQFKDFQSVSKALLLHEKKIHEGKKARKLRISRCKNMRKAQGNQ 386
Query: 421 TPSKRKDVAPAVNSPPKKFVLDSRTLGSGNRSNSKVAMSYQGLQASKSCTQKKVHSGSSG 480
+ + + + K + LG +R+ ++ +GL+ASK T +
Sbjct: 387 SSLQNNKLN---DQQRTKLGRAKKVLGKADRAKLGEELTIEGLRASKGET--------TP 435
Query: 481 VVKMKKSRTQKG 492
V+K K+R++ G
Sbjct: 436 VLKRTKNRSKTG 447
>sp|Q7S2L7|NOP12_NEUCR Nucleolar protein 12 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nop-12
PE=3 SV=1
Length = 594
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 54/236 (22%)
Query: 226 RTIFVGNLPLKV-----KKKTLIKEFIKF--------GEIDSVRIRSVPIIDTKIPRKGA 272
RT+F+ N+ ++ KK L+K +++S+R RS IP++ A
Sbjct: 200 RTVFLSNVAVEAVTSRSAKKALMKHMASVLDKEAKPAQKVESIRFRSTAFATAAIPKRAA 259
Query: 273 ILQKQINE-NADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRACPPRKKLKGEDA 330
++K + E S +AY+V+ + + A + N ++ HIR+D P A
Sbjct: 260 YIKKSVMEATTKSTNAYVVYSTPAAARLACSKLNGTIVLDRHIRVDSVAHP--------A 311
Query: 331 PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN---------------DLESS--------- 366
P+ D K+ VFVGNL F V DE + Q+ + D+E
Sbjct: 312 PV-DHKRCVFVGNLGF-VDDETVLQVKVDEDGKEVTEKKKRTKQPMDVEEGLWRVFGKEG 369
Query: 367 --VEAVRVIRHPHMRVGKGIAYVLF---KTREAANLVIKRRNLKLRDRELRLSHAQ 417
VE+VRV+R P RVGKG AYV F E+A L+ ++ + RELR+S +
Sbjct: 370 GKVESVRVVRDPVTRVGKGFAYVQFCDENAVESAILLNGKKFPPMLPRELRVSRCK 425
>sp|Q4IQW0|NOP12_GIBZE Nucleolar protein 12 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=NOP12 PE=3 SV=1
Length = 559
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 138/323 (42%), Gaps = 74/323 (22%)
Query: 152 SVEGKKRSENKKTKKRKRDDVEKDYVEKKYGVIAKEEEGKKVGVGEKRKKADNETE---- 207
+ E K E K+ +K DD+E Y++K +A EEE + G KR+K D T+
Sbjct: 126 ATEDKSNKERKRKRKNDNDDLEGKYLDK----VAAEEEADRAG---KRQKNDALTKTEKP 178
Query: 208 -----------DMLVHR---KEEGFDDEGKLLRTIFVGNLPL-----KVKKKTLIKEFIK 248
D+ VH K+ D K RT+F+ N+ K KKTL+
Sbjct: 179 AVDEEDAGNESDIPVHETLVKDSKASDLDKAARTVFLANVSTEAISSKSAKKTLMAHLSS 238
Query: 249 FGE--------IDSVRIRSVPIIDTKIPRKGAILQKQI-NENADSVHAYIVFKSEQSTEA 299
E I+S+R RSV +P++ A + K + + S +AY+V+ + +
Sbjct: 239 VLEKDATPPQTIESLRFRSVAFAGGSLPKRAAYITKSLMDSTTKSANAYVVYSTTAAART 298
Query: 300 ALA-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDE------- 351
A N + H+R+D P +P D ++ VFVGNL F V DE
Sbjct: 299 AATKLNGTQVLDRHLRVDSVAHP--------SPT-DHRRCVFVGNLGF-VDDETVLNTNA 348
Query: 352 --------------EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR---EA 394
+I + + VE VRV+R RVGKG AYV F EA
Sbjct: 349 EGDTTEKKKNKTPSDIEEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQFYDANDVEA 408
Query: 395 ANLVIKRRNLKLRDRELRLSHAQ 417
A L+ ++ + R+LR++ A+
Sbjct: 409 ALLLDGKKFPPMLPRKLRVTRAK 431
>sp|Q4WCH5|NOP12_ASPFU Nucleolar protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=nop12 PE=3 SV=1
Length = 538
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 123/268 (45%), Gaps = 67/268 (25%)
Query: 212 HRKEEGFDDEGKLL----RTIFVGN-----LPLKVKKKTLIKEFIKF----------GEI 252
H + G D E K L RT+F+GN + K KKTL+K F ++
Sbjct: 186 HETQSG-DPESKELEKSNRTVFLGNVSSQAIKSKSAKKTLLKHLASFLSTLPESTGPHKV 244
Query: 253 DSVRIRSVPIIDT-KIPRKGAILQKQI-NENADSVHAYIVFKSEQST-EAALAFNMAVIG 309
+S+R RSV K+P++ A +++I ++ S +AY+V+ + Q+ +A A N V+
Sbjct: 245 ESIRFRSVAFASGGKVPKRAAFARREILDDTTPSTNAYVVYSTVQAARKAPAALNGTVVL 304
Query: 310 GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL----------------------PFD 347
H+R+D P + D K+ VFVGNL P D
Sbjct: 305 DRHLRVDSVAHPSQ---------IDHKRCVFVGNLDFVDNETDPEEDDKKKKKKKSGPAD 355
Query: 348 VKDEEIYQLFCGLN-------DLESSVEAVRVIRHPHMRVGKGIAYVLFKTR---EAANL 397
V +E +++ F +VE+VRV+R RVGKG AYV F + E A L
Sbjct: 356 V-EEGLWRTFNAHTKGSKERASTRGNVESVRVVRDRTTRVGKGFAYVQFYDQVCVEEALL 414
Query: 398 VIKRRNLKLRDRELRLSHAQQNCTPSKR 425
+ ++ + R+LR++ A++ P KR
Sbjct: 415 LDGKKFPPMLPRKLRVTRAKK--LPKKR 440
>sp|Q5BDC8|NOP12_EMENI Nucleolar protein 12 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=nop12 PE=3 SV=1
Length = 520
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 172/389 (44%), Gaps = 105/389 (26%)
Query: 116 LGFEPNGTIEN-EIKKEHSSNVGSES-----YLNRQKQNSNFSVEGKKRSENKKTKKRKR 169
LG P I + E +E SS+ G++S ++ ++ + + E + ++KRKR
Sbjct: 52 LGAAPKTKITDVEKDEEESSSAGNDSASEDQFMEDAPESPDAAEEAVQAVPEPPSRKRKR 111
Query: 170 ---DDVEKDYVEKKYGVIAKEEEGKKVGVGEKRKKA---------------------DNE 205
+D+E+ Y+ + +AKEE+ + +K+++A D E
Sbjct: 112 AAGEDLEESYMRR----LAKEEQKE-----QKKRRAERSSSLEEESEDGEKESPQSEDGE 162
Query: 206 TED----MLVHRKEEGF---DDE-GKLLRTIFVGNLPLKV-----KKKTLIKEFIKF--- 249
+ED + H G DDE K RT+F+GN+ K KK L+K F
Sbjct: 163 SEDEGADIPKHEALAGAANDDDELSKSNRTVFLGNVSTKAITSKSAKKELMKHLSSFLST 222
Query: 250 -------GEIDSVRIRSVPIIDT-KIPRKGAILQKQINENAD-SVHAYIVFKSEQSTEAA 300
+IDS+R RS KIP++ A +++I+++ S +AY V+ + Q+ + A
Sbjct: 223 LPESTGPHKIDSIRFRSTAFASGGKIPKRAAFAKQEIHDDTTPSTNAYAVYSTAQAAKKA 282
Query: 301 LA-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL--------------- 344
A N V+ H+R+D P K D K+ VFVGNL
Sbjct: 283 PAALNGTVVLDRHLRVDNVAHPAK---------VDHKRCVFVGNLDFIDNETGTEEGEKK 333
Query: 345 -----PFDVKDEEIYQLFCGLNDLESS-------VEAVRVIRHPHMRVGKGIAYVLFKTR 392
P DV +E +++ F S VE+VRV+R RVGKG AYV F +
Sbjct: 334 KKNRPPADV-EEGLWRTFNAHTKASQSGPAGRGNVESVRVVRDRSTRVGKGFAYVQFYDQ 392
Query: 393 ---EAANLVIKRRNLKLRDRELRLSHAQQ 418
E A L+ +R L R+LR+ A++
Sbjct: 393 NCVEEALLLNDKRFPPLLPRKLRVVRAKK 421
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T++VG L KV + L + F++ G P+++T +P+ Q Q +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAG----------PVVNTHMPKDRVTGQHQ-------GY 56
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
++ F SE+ + A+ NM + G IR+++A K L D+ +F+GNL
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL--------DVGANIFIGNLD 108
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405
++ ++ +Y F + ++ +++R P KG A++ F + +A++ I+ N +
Sbjct: 109 PEIDEKLLYDTFSAFGVI---LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 165
Query: 406 -LRDRELRLSHA 416
L +R + +S+A
Sbjct: 166 YLCNRPITVSYA 177
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T++VG L KV + L + F++ G P+++T +P+ Q Q +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAG----------PVVNTHMPKDRVTGQHQ-------GY 56
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
++ F SE+ + A+ NM + G IR+++A K L D+ +F+GNL
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL--------DVGANIFIGNLD 108
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405
++ ++ +Y F + ++ +++R P KG A++ F + +A++ I+ N +
Sbjct: 109 PEIDEKLLYDTFSAFGVI---LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 165
Query: 406 -LRDRELRLSHA 416
L +R + +S+A
Sbjct: 166 YLCNRPITVSYA 177
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T++VG L KV + L + F++ G P+++T +P+ Q Q +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAG----------PVVNTHMPKDRVTGQHQ-------GY 56
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
++ F SE+ + A+ NM + G IR+++A K L D+ +F+GNL
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL--------DVGANIFIGNLD 108
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405
++ ++ +Y F + ++ +++R P KG A++ F + +A++ I+ N +
Sbjct: 109 PEIDEKLLYDTFSAFGVI---LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 165
Query: 406 -LRDRELRLSHA 416
L +R + +S+A
Sbjct: 166 YLCNRPITVSYA 177
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPR-KGAILQKQINENADSV 285
T+FVG L V + L +EF ++G I R+ I+D + R KG
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARV----IMDGQSGRSKG-------------- 305
Query: 286 HAYIVFKSEQSTEAALAFN-MAVIGGNHIRLDRACP--------PRKKLKGEDAPLYDIK 336
+ Y+ F++ ++ +AA+A N I G + LD + P +++ L +
Sbjct: 306 YGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPS 365
Query: 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN 396
TVFVGNL F+ ++++ F G D++S +R+ P KG YV F ++A
Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQS----IRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 397 LVIKRRNLKLRDRELRLSHA 416
++ + R RL +
Sbjct: 422 KCVEMNGHFIAGRPCRLDFS 441
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
Query: 228 IFVGNLPLKVKKKTLIKEFI---KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADS 284
+++GNL K L++ FI K E + R+ I +PR A K N +
Sbjct: 127 VWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAA---KNSNAMKNK 183
Query: 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKT-----V 339
Y+ FK+ + +A L + + + G ++ + + + +D L + K +
Sbjct: 184 GFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDD--LVAMSKNPPSRIL 241
Query: 340 FVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANL 397
FVGNL FDV D+ + + F CG + +R+ KG A++ FK E +
Sbjct: 242 FVGNLSFDVTDDLLRKHFQHCG------DIVKIRMATFEDSGKCKGFAFIDFKNEEGSTN 295
Query: 398 VIKRRNL-KLRDRELRLSHAQQNCTPSKRKDV 428
+K ++ K+ R LR+ + + RK V
Sbjct: 296 ALKDKSCRKIAGRPLRMEYGEDRSKRQVRKKV 327
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 19/130 (14%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLN----DLESSVEAVRVIRHPHMRVG---------K 382
K V++GNL FD +++ + F D +S V + R RV K
Sbjct: 124 KYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNAMKNK 183
Query: 383 GIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNCTPSKRKDVAPAVNSPPKKFVLD 442
G Y+ FK E V++ L R + + ++ + D+ +PP
Sbjct: 184 GFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPP------ 237
Query: 443 SRTLGSGNRS 452
SR L GN S
Sbjct: 238 SRILFVGNLS 247
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 286 HAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
Y+ F SE+ E AL I G +++++A K E+ D +T+FV N+P
Sbjct: 275 FGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAMAFDKNKTAENKKERD-SRTLFVKNIP 333
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG--KGIAYVLFKTREAANLVIKRR 402
+ EE+ ++F E + IR P + G KGIAYV F + AN ++ +
Sbjct: 334 YSTTVEELQEIF----------ENAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEK 382
>sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens
GN=EIF4B PE=1 SV=2
Length = 611
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH--MRVGKGIAYVLFKTREAA 395
T F+GNLP+DV +E I + F GLN + AVR+ R P R+ KG Y F+ ++
Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGLN-----ISAVRLPREPSNPERL-KGFGYAEFEDLDSL 150
Query: 396 NLVIKRRNLKLRDRELRLSHAQQ 418
+ L +R +R+ A Q
Sbjct: 151 LSALSLNEESLGNRRIRVDVADQ 173
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 34/198 (17%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
DEGK+ F+G L KK L + +FGE+ I++ P+
Sbjct: 24 DEGKM----FIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVT---------------- 63
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L N + G I RA K LKG++ P K V
Sbjct: 64 -GRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA----KALKGKEPP-----KKV 113
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVI 399
FVG L + +E+I Q F G ++E+ + + +G +V + E ++
Sbjct: 114 FVGGLSPETTEEQIKQYFGGFGEIEN----IELPIDTKTNERRGFCFVTYTGEEPVKKLL 169
Query: 400 KRRNLKLRDRELRLSHAQ 417
+ R ++ + + AQ
Sbjct: 170 ESRFHQIGTGKCEIKAAQ 187
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRE--- 393
KTVF+ NL FD ++E + ++ DL+ VRV+ HP KG A+ F T+E
Sbjct: 325 KTVFIRNLSFDSEEEALGEVLQQFGDLKY----VRVVLHPDTEHSKGCAFAQFMTQEAAQ 380
Query: 394 ----AANLVIKRRNLKLRDRELRLSHA 416
AA+L + LKL R+L++ A
Sbjct: 381 KCLAAASLEAEGGGLKLDGRQLKVDLA 407
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINEN 281
G L +++VG+L V + L ++F G I S+R+ + I
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRV-----------------CRDIATR 49
Query: 282 ADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL---DRACPPRKKLKGEDAPLYDIKK 337
+AYI F+ E AL N VI G IR+ R RK G
Sbjct: 50 RSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------- 99
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANL 397
VF+ NL + ++ +Y F ++ S +V+ H +G +V F+T+EAAN
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILS----CKVVCDEHG--SRGYGFVHFETQEAANR 153
Query: 398 VIKRRN-LKLRDRELRLSH 415
I+ N + L DR++ + H
Sbjct: 154 AIQTMNGMLLNDRKVFVGH 172
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 93/205 (45%), Gaps = 30/205 (14%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
TI+VG L KV + L + ++ G P++ +P+ ++ N
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAG----------PVVSVNMPKD------RVTANHQGF- 56
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
++ F E+ + A+ NM + G I++++A K + D+ +FVGNL
Sbjct: 57 GFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM--------DVGANIFVGNLD 108
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405
+V ++ +Y F + ++ +++R KG A++ F + EA++ ++ N +
Sbjct: 109 PEVDEKLLYDTFSAFGVI---LQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQ 165
Query: 406 -LRDRELRLSHAQQNCTPSKRKDVA 429
L +R + +S+A + + +R A
Sbjct: 166 FLCNRAITVSYAFKRDSKGERHGTA 190
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINEN 281
G L ++++G+L V + L ++F G I S+R+ + I
Sbjct: 7 GYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV-----------------CRDIATR 49
Query: 282 ADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL---DRACPPRKKLKGEDAPLYDIKK 337
+AYI F+ E AL N VI G IR+ R RK G
Sbjct: 50 RSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------- 99
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANL 397
VF+ NL + ++ +Y F ++ S +V+ H +G +V F+T EAAN
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILS----CKVVCDEHG--SRGYGFVHFETHEAANR 153
Query: 398 VIKRRN-LKLRDRELRLSH 415
I+ N + L DR++ + H
Sbjct: 154 AIQTMNGMLLNDRKVFVGH 172
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQI 278
+D GK+ FVG L KK L F KFGE+ I+ P
Sbjct: 72 EDAGKM----FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP----------------- 110
Query: 279 NENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLD-RACPPRKKLKGEDAPLYDIKK 337
N +I+FK S E V+ RLD R P+K + + P+ K
Sbjct: 111 NTGRSRGFGFILFKDSSSVE-------KVLDQKEHRLDGRVIDPKKAMAMKKDPV----K 159
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANL 397
+FVG L + +E+I + F + +EA+ + P + +G ++ FK +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGE----IEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Query: 398 VIKRRNLKLRDRELRLSHAQ 417
V++++ + + + AQ
Sbjct: 216 VLEKKFHTVSGSKCEIKVAQ 235
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 38/201 (18%)
Query: 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQI 278
+D GK+ FVG L KK L F KFGE+ I+ P
Sbjct: 66 EDAGKM----FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP----------------- 104
Query: 279 NENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLD-RACPPRKKLKGEDAPLYDIKK 337
N +I+FK S E V+ RLD R P+K + + P+ K
Sbjct: 105 NTGRSRGFGFILFKDAASVE-------KVLDQKEHRLDGRVIDPKKAMAMKKDPV----K 153
Query: 338 TVFVGNL-PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAAN 396
+FVG L P +E+I + F + +EA+ + P + +G ++ FK E
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGE----IEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Query: 397 LVIKRRNLKLRDRELRLSHAQ 417
V++++ + + + AQ
Sbjct: 210 KVLEKKFHTVSGSKCEIKVAQ 230
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 34/198 (17%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
D+GK+ F+G L KK L + +FGE+ I++ P+ T R
Sbjct: 28 DDGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV--TGRSRG--------- 72
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S E L + G I RA K LKG++ P K V
Sbjct: 73 ------FGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 117
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVI 399
FVG L D +E+I + F ++E+ + + +G ++ + E ++
Sbjct: 118 FVGGLSPDTSEEQIKEYFGAFGEIEN----IELPMDTKTNERRGFCFITYTDEEPVKKLL 173
Query: 400 KRRNLKLRDRELRLSHAQ 417
+ R ++ + + AQ
Sbjct: 174 ESRYHQIGSGKCEIKVAQ 191
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
D+GK+ F+G L KK L + +FGE+ I++ P+ +G
Sbjct: 146 DDGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRS---RG-------- 190
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L + G I RA K LKG++ P K V
Sbjct: 191 ------FGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 235
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLE 364
FVG L D +E+I + F ++E
Sbjct: 236 FVGGLSPDTSEEQIKEYFGAFGEIE 260
>sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B OS=Mus musculus
GN=Eif4b PE=1 SV=1
Length = 611
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM--RVGKGIAYVLFKTREAA 395
T F+GNLP+DV ++ I F GLN + AVR+ R P R+ KG Y F+ ++
Sbjct: 97 TAFLGNLPYDVTEDSIKDFFRGLN-----ISAVRLPREPSNPDRL-KGFGYAEFEDLDSL 150
Query: 396 NLVIKRRNLKLRDRELRLSHAQQ 418
+ L +R +R+ A Q
Sbjct: 151 LSALSLNEESLGNRRIRVDVADQ 173
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 38/196 (19%)
Query: 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADS 284
L ++++G+L V + L ++F G I S+R+ + I
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV-----------------CRDIATRRSL 52
Query: 285 VHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL---DRACPPRKKLKGEDAPLYDIKKTVF 340
+AYI F+ E AL N VI G IR+ R RK G VF
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG----------NVF 102
Query: 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIK 400
+ NL + ++ +Y F D+ S +V+ + +G +V F+T+EAAN I+
Sbjct: 103 IKNLDDSIDNKALYDTFSAFGDILS----CKVVCDEYG--SRGYGFVHFETQEAANRAIQ 156
Query: 401 RRN-LKLRDRELRLSH 415
N + L DR++ + H
Sbjct: 157 TMNGMLLNDRKVFVGH 172
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
DEGK+ F+G L KK L + +FGE+ I++ P+ T R
Sbjct: 24 DEGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV--TGRSRG--------- 68
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L + G I RA K LKG++ P K V
Sbjct: 69 ------FGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 113
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLES 365
FVG L + +E+I Q F G ++E+
Sbjct: 114 FVGGLSPETTEEQIKQYFGGFGEIEN 139
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG--KGIAYVLFKTREA 394
KT+FVGNLP++V+ E++ Q F + + E V IR G +G +V F T EA
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFF------QEAGEVVD-IRFSTFEDGNFRGFGHVEFATAEA 501
Query: 395 ANLVIKRRNLKLRDRELRLSHAQQNC--TPSKRKD 427
A ++ L R +RL A++ TP +D
Sbjct: 502 AKKALELAGHDLMGRPVRLDLARERGAYTPGSGRD 536
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADS 284
RTIF+G LP + + L K F+KFGEI+ +RI K I QK
Sbjct: 106 YRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRI-----------VKDKITQKSKG----- 149
Query: 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRAC 319
+A+IVFK S++ A + V G I+ DR C
Sbjct: 150 -YAFIVFKDPISSKMAFK-EIGVHRGIQIK-DRIC 181
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRE 393
D +T+F+G LP+D+ + E+ + F + +E +R+++ + KG A+++FK
Sbjct: 104 DPYRTIFIGRLPYDLDEIELQKYFVKFGE----IEKIRIVKDKITQKSKGYAFIVFKDPI 159
Query: 394 AANLVIK----RRNLKLRDR 409
++ + K R ++++DR
Sbjct: 160 SSKMAFKEIGVHRGIQIKDR 179
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAA 395
K TV+V N+PF + + ++++L V V +++ H R+ KG+A+VLF RE+A
Sbjct: 9 KSTVYVSNIPFSLTNSDMHKLCSKYG----KVVKVTIVKDKHTRMSKGVAFVLFLDRESA 64
Query: 396 -NLVIKRRNLKLRDRELRLSHAQQN 419
N N +L R ++ S A N
Sbjct: 65 YNCSRSLNNKQLFGRMVKASIAIDN 89
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 34/198 (17%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
D+GK+ F+G L KK L + +FGE+ I++ P+ T R
Sbjct: 27 DDGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV--TGRSRG--------- 71
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L + G I RA K LKG++ P K V
Sbjct: 72 ------FGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 116
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVI 399
FVG L D +E+I + F ++E+ + + +G ++ + E ++
Sbjct: 117 FVGGLSPDTSEEQIKEYFGAFGEIEN----IELPMDTKTNERRGFCFITYTDEEPVKKLL 172
Query: 400 KRRNLKLRDRELRLSHAQ 417
+ R ++ + + AQ
Sbjct: 173 ESRYHQIGSGKCEIKVAQ 190
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287
+F+G L KK L + +FGE+ I++ P+
Sbjct: 53 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVT-----------------GRSRGFG 95
Query: 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD 347
+++FK S + L + G I RA K LKG++ P K VFVG L D
Sbjct: 96 FVLFKDAASVDKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKVFVGGLSPD 146
Query: 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLR 407
+E+I + F ++E+ + + +G ++ + E +++ R ++
Sbjct: 147 TSEEQIKEYFGAFGEIEN----IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIG 202
Query: 408 DRELRLSHAQ 417
+ + AQ
Sbjct: 203 SGKCEIKVAQ 212
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 30/205 (14%)
Query: 198 KRKKADNETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257
KRK D E E+ ++ ++E + TIFVG L + + L KEF G + R+
Sbjct: 140 KRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARV 199
Query: 258 RSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIRLD 316
I +G + + Y+ F+++ E A+ I G I D
Sbjct: 200 ---------IYERGTDRSRG--------YGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 242
Query: 317 RACP------PRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV 370
+ R K G D P + T+F+GNL F+ + I++LF V +V
Sbjct: 243 MSTSKPAGNNDRAKKFG-DTP-SEPSDTLFLGNLSFNADRDAIFELFA----KHGEVVSV 296
Query: 371 RVIRHPHMRVGKGIAYVLFKTREAA 395
R+ HP KG YV F E A
Sbjct: 297 RIPTHPETEQPKGFGYVQFSNMEDA 321
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
TI++GNL KV L + ++ G P+++ IPR N+ +
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAG----------PVVNIHIPRDRV-------RNSHNGF 54
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
+ F EQ E A N + G IR++RA + +G + I +FVGNL
Sbjct: 55 GFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA----SQDRGVNT---LIGANLFVGNLD 107
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405
V + +Y F L L V+A +V R + R KG +V + + E A+ I+ N +
Sbjct: 108 PLVDERVLYDTFSALGQL---VKAPQVARDENGR-SKGYGFVSYDSFETADAAIEAMNNQ 163
Query: 406 -LRDRELRLSHA 416
L ++ + +S+A
Sbjct: 164 FLMNKPITVSYA 175
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 215 EEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAIL 274
+EG D+E T+F+ NL ++LI+ F S RI++ P D K P G L
Sbjct: 582 DEG-DEEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKP--DPKNP--GQTL 636
Query: 275 QKQINENADSVHAYIVFKSEQSTEAALAF--------NMAVIGGNHIRLDRACPPRKKLK 326
+ FK++ +AALA + V+ +H +D A RK+
Sbjct: 637 SMGF--------GFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKE-- 686
Query: 327 GEDAPLYDIKKT-VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385
+ A ++T + + NLPF +++ LF L S VRV + R +G
Sbjct: 687 -DTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRS----VRVPKK-FDRSARGFG 740
Query: 386 YVLF-KTREAANLVIKRRNLKLRDRELRLSHA 416
+ F REA N + +N L R L L A
Sbjct: 741 FADFVSAREAENAMDALKNTHLLGRRLVLEFA 772
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 37/194 (19%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
+++VG L V + L + F G++ S+R+ + A+ ++ + +
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVC-----------RDAVTRRSLG------Y 91
Query: 287 AYIVFKSEQSTEAALA-FNMAVIGGNHIRL---DRACPPRKKLKGEDAPLYDIKKTVFVG 342
AY+ + S + E AL N VI G R+ R RK +G VF+
Sbjct: 92 AYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQG----------NVFIK 141
Query: 343 NLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402
NL + ++ ++ F ++ S + + KG +V ++T EAAN IK
Sbjct: 142 NLDHAIDNKALHDTFAAFGNILSCK-----VAQDELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 403 N-LKLRDRELRLSH 415
N + L ++++ + H
Sbjct: 197 NGMLLNEKKVFVGH 210
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287
+F+ NL + K L F FG I S ++ + ++K + + E A++
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSK---GYGFVHYETAEAANNAIK 194
Query: 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD 347
++ L V G+HI P+K+ + + ++V N+ D
Sbjct: 195 HV--------NGMLLNEKKVFVGHHI-------PKKERMSKFEEMKANFTNIYVKNIDLD 239
Query: 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL 406
V DE+ +LF D+ S+ + R + +G +V + EAA + + N ++
Sbjct: 240 VTDEDFRELFEKHGDITSA----SIARDDQGK-SRGFGFVNYIRHEAAAVAVDHLNDIEF 294
Query: 407 RDRELRLSHAQQ 418
+ ++L + AQ+
Sbjct: 295 KGQKLYVGRAQK 306
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 286 HAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
Y+ F+S + E AL + GN I+L+ K KG D+ +T+ NL
Sbjct: 353 FGYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGRDSKKVRAARTLLAKNLS 405
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
F++ ++E+ ++F E +VE +R++ KGIAY+ FK+
Sbjct: 406 FNITEDELKEVF------EDAVE-IRLVSQDGRS--KGIAYIEFKS 442
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAA 395
K TV+V NLPF + + +++++F V V +++ R KG+++VLF +E+A
Sbjct: 9 KSTVYVSNLPFSLTNNDLHRIFSKYG----KVVKVTILKDKDSRKSKGVSFVLFLDKESA 64
Query: 396 -NLVIKRRNLKLRDRELRLSHAQQN 419
N V N +L R ++ S A+ N
Sbjct: 65 QNCVRGLNNKQLFGRAIKASIAKDN 89
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287
+F+G L KK L F KFGE+ ++ PI
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT-----------------GRSRGFG 141
Query: 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD 347
+++FK +S + + + G I P R K P+ K +FVG L D
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVID-----PKRAKAMKTKEPV----KKIFVGGLSPD 192
Query: 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR--NLK 405
+E+I + F G + VE++ + +G ++ FK E +++++ N+
Sbjct: 193 TPEEKIREYFGGFGE----VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 248
Query: 406 LRDRELRLSHAQQ 418
L E++++ +++
Sbjct: 249 LSKCEIKVAMSKE 261
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287
+FVGNL V + L F + G ++ + I ++ +++
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEV---------------IYNRETDQSRG--FG 194
Query: 288 YIVFKSEQSTEAALA-FNMAVIGGNHIRLDRACPPRKKLKGEDAP-LYDIKKTVFVGNLP 345
++ S E A+ FN + G + +++A P + + E AP +Y+ V+VGNLP
Sbjct: 195 FVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP--RGSRPERAPRVYEPAFRVYVGNLP 252
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405
+DV + + QLF + VEA RV+ +G +V + N I + +
Sbjct: 253 WDVDNGRLEQLFSEHGKV---VEA-RVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQ 308
Query: 406 -LRDRELRLSHAQQ 418
L R +R++ A++
Sbjct: 309 NLEGRAIRVNVAEE 322
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
R +FVG L + +K L F K+GEI+S+ +++ P + R
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDP----QTGRSRGF------------ 99
Query: 286 HAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
A+IVF + ++ + A + +I N ++D P + K + +FVG L
Sbjct: 100 -AFIVFTNTEAIDKVSAADEHII--NSKKVD---PKKAKAR---------HGKIFVGGLT 144
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405
++ DEEI F ++ VE V + KG ++ F + + ++K K
Sbjct: 145 TEISDEEIKTYFGQFGNI---VE-VEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK 200
Query: 406 LRDRELRLSHA 416
+ +E+ + A
Sbjct: 201 IAGKEVDVKRA 211
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 286 HAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
Y+ F+S + E AL + GN I+L+ K KG+D+ +T+ NLP
Sbjct: 351 FGYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGKDSKKERDARTLLAKNLP 403
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR-EAANLVIKRRNL 404
+ V +E+ ++F E + E +R++ KGIAY+ FKT +A +++
Sbjct: 404 YKVTQDELKEVF------EDAAE-IRLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGT 454
Query: 405 KLRDRELRLSH 415
++ R + L +
Sbjct: 455 EIDGRSISLYY 465
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 286 HAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
Y+ F+S + E AL + GN I+L+ K KG+D+ +T+ NLP
Sbjct: 349 FGYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGKDSKKERDARTLLAKNLP 401
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR-EAANLVIKRRNL 404
+ V +E+ ++F E + E +R++ KGIAY+ FKT +A +++
Sbjct: 402 YKVTQDELKEVF------EDAAE-IRLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGT 452
Query: 405 KLRDRELRLSH 415
++ R + L +
Sbjct: 453 EIDGRSISLYY 463
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,155,755
Number of Sequences: 539616
Number of extensions: 8489014
Number of successful extensions: 35049
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 860
Number of HSP's that attempted gapping in prelim test: 31326
Number of HSP's gapped (non-prelim): 3196
length of query: 548
length of database: 191,569,459
effective HSP length: 123
effective length of query: 425
effective length of database: 125,196,691
effective search space: 53208593675
effective search space used: 53208593675
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)