Query 008920
Match_columns 548
No_of_seqs 517 out of 2255
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 18:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 9.2E-29 2E-33 258.9 24.8 169 223-421 105-277 (346)
2 TIGR01645 half-pint poly-U bin 100.0 3.5E-27 7.6E-32 259.9 21.8 175 224-419 106-284 (612)
3 TIGR01622 SF-CC1 splicing fact 99.9 7.9E-27 1.7E-31 253.1 22.3 179 220-419 84-266 (457)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.3E-26 9.2E-31 238.8 21.7 165 225-419 3-171 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.4E-25 3E-30 234.9 23.0 174 225-419 89-349 (352)
6 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.5E-24 5.5E-29 236.5 22.8 173 220-419 170-375 (509)
7 TIGR01628 PABP-1234 polyadenyl 99.9 3.9E-24 8.4E-29 238.3 20.0 164 227-419 2-167 (562)
8 KOG0148 Apoptosis-promoting RN 99.9 3.8E-24 8.3E-29 209.0 17.1 169 225-420 62-239 (321)
9 TIGR01628 PABP-1234 polyadenyl 99.9 1.9E-23 4.2E-28 232.7 20.7 173 224-419 177-364 (562)
10 KOG0131 Splicing factor 3b, su 99.9 1.1E-23 2.3E-28 195.8 13.2 170 224-422 8-180 (203)
11 KOG0144 RNA-binding protein CU 99.9 1.1E-23 2.3E-28 216.7 13.0 176 219-424 28-211 (510)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.6E-22 3.5E-27 221.4 21.6 164 225-419 2-174 (481)
13 KOG0127 Nucleolar protein fibr 99.9 5.5E-23 1.2E-27 216.4 16.1 172 226-419 6-196 (678)
14 KOG0127 Nucleolar protein fibr 99.9 1.5E-22 3.3E-27 213.0 18.5 173 225-419 117-378 (678)
15 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-22 3.2E-27 223.0 18.3 160 224-419 57-222 (578)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9E-22 2E-26 215.5 21.6 169 223-419 273-480 (481)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.9E-22 1.9E-26 216.3 21.3 174 224-418 294-501 (509)
18 KOG0117 Heterogeneous nuclear 99.9 5.2E-22 1.1E-26 205.2 16.8 165 223-422 81-251 (506)
19 KOG0145 RNA-binding protein EL 99.9 7E-22 1.5E-26 192.1 14.3 167 223-419 39-209 (360)
20 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-20 2.5E-25 208.0 21.7 167 225-421 138-309 (578)
21 KOG0145 RNA-binding protein EL 99.9 4.4E-21 9.6E-26 186.5 15.4 172 226-418 128-357 (360)
22 KOG0124 Polypyrimidine tract-b 99.9 1.2E-21 2.7E-26 197.6 10.1 174 225-419 113-290 (544)
23 TIGR01622 SF-CC1 splicing fact 99.8 1.4E-19 3E-24 196.5 21.4 169 225-418 186-447 (457)
24 KOG0110 RNA-binding protein (R 99.8 1.6E-20 3.5E-25 203.6 13.7 175 227-419 517-693 (725)
25 KOG0117 Heterogeneous nuclear 99.8 4.4E-20 9.5E-25 191.1 16.0 168 223-422 162-334 (506)
26 KOG0147 Transcriptional coacti 99.8 1.9E-20 4.2E-25 198.4 7.5 184 217-421 171-360 (549)
27 KOG0123 Polyadenylate-binding 99.8 3.9E-19 8.4E-24 187.7 16.6 150 226-419 2-153 (369)
28 KOG0109 RNA-binding protein LA 99.8 1E-19 2.3E-24 179.7 10.9 145 227-419 4-150 (346)
29 KOG4205 RNA-binding protein mu 99.8 1.4E-18 3.1E-23 178.1 12.3 173 224-420 5-177 (311)
30 KOG0123 Polyadenylate-binding 99.7 1.6E-17 3.6E-22 175.3 14.7 167 227-419 78-246 (369)
31 KOG0148 Apoptosis-promoting RN 99.7 1.4E-17 3E-22 163.3 11.0 137 224-419 5-142 (321)
32 KOG0144 RNA-binding protein CU 99.7 8.2E-17 1.8E-21 166.3 12.8 84 336-423 424-508 (510)
33 KOG0105 Alternative splicing f 99.7 7.9E-16 1.7E-20 143.6 17.7 153 223-406 4-175 (241)
34 KOG0146 RNA-binding protein ET 99.7 1.6E-16 3.5E-21 155.4 12.3 175 224-420 18-366 (371)
35 KOG4211 Splicing factor hnRNP- 99.7 2E-15 4.4E-20 158.7 16.9 167 225-417 10-180 (510)
36 PLN03134 glycine-rich RNA-bind 99.6 3.1E-15 6.7E-20 138.5 15.1 85 333-421 31-116 (144)
37 KOG0113 U1 small nuclear ribon 99.6 1.7E-15 3.6E-20 150.6 13.7 169 105-319 8-179 (335)
38 TIGR01645 half-pint poly-U bin 99.6 1.3E-14 2.7E-19 160.9 21.5 80 224-320 203-283 (612)
39 KOG4206 Spliceosomal protein s 99.6 5.7E-15 1.2E-19 142.5 15.8 165 224-417 8-220 (221)
40 KOG0106 Alternative splicing f 99.5 3.7E-14 7.9E-19 138.0 10.4 152 227-415 3-167 (216)
41 KOG0110 RNA-binding protein (R 99.5 7.8E-14 1.7E-18 152.1 13.3 173 218-417 378-596 (725)
42 KOG0147 Transcriptional coacti 99.5 9.2E-14 2E-18 148.0 12.2 166 227-418 280-527 (549)
43 PLN03134 glycine-rich RNA-bind 99.5 1.3E-13 2.8E-18 127.7 11.1 81 224-321 33-114 (144)
44 KOG1548 Transcription elongati 99.5 9.1E-13 2E-17 133.6 16.9 184 217-418 126-351 (382)
45 KOG4212 RNA-binding protein hn 99.5 8.3E-13 1.8E-17 136.8 16.4 170 224-416 43-291 (608)
46 COG0724 RNA-binding proteins ( 99.5 5.4E-13 1.2E-17 130.9 13.6 153 225-398 115-283 (306)
47 PF00076 RRM_1: RNA recognitio 99.4 7.5E-13 1.6E-17 105.4 9.2 69 228-314 1-70 (70)
48 KOG1457 RNA binding protein (c 99.4 2E-12 4.4E-17 124.2 13.3 160 220-403 29-269 (284)
49 PF00076 RRM_1: RNA recognitio 99.4 1.8E-12 4E-17 103.2 9.2 69 339-412 1-70 (70)
50 TIGR01659 sex-lethal sex-letha 99.4 1.5E-12 3.2E-17 137.0 10.9 83 333-419 104-187 (346)
51 KOG0121 Nuclear cap-binding pr 99.4 7.9E-13 1.7E-17 117.1 6.9 80 223-319 34-114 (153)
52 PLN03120 nucleic acid binding 99.4 2.2E-12 4.8E-17 128.7 10.0 76 225-320 4-79 (260)
53 KOG4207 Predicted splicing fac 99.4 4.7E-12 1E-16 120.5 11.2 86 330-419 7-93 (256)
54 KOG0122 Translation initiation 99.3 3.4E-12 7.3E-17 124.3 9.6 83 333-419 186-269 (270)
55 KOG0149 Predicted RNA-binding 99.3 2.4E-12 5.3E-17 124.8 8.1 82 336-421 12-93 (247)
56 KOG0129 Predicted RNA-binding 99.3 2E-11 4.2E-16 129.8 14.4 181 221-416 255-451 (520)
57 PF14259 RRM_6: RNA recognitio 99.3 1E-11 2.2E-16 99.8 9.3 69 339-412 1-70 (70)
58 KOG0113 U1 small nuclear ribon 99.3 3.8E-11 8.1E-16 119.9 14.5 91 332-426 97-188 (335)
59 PF14259 RRM_6: RNA recognitio 99.3 2.1E-11 4.5E-16 98.0 9.0 69 228-314 1-70 (70)
60 PLN03120 nucleic acid binding 99.3 2.3E-11 4.9E-16 121.5 11.1 77 336-419 4-80 (260)
61 KOG0105 Alternative splicing f 99.3 1.3E-11 2.7E-16 115.8 8.6 134 335-479 5-139 (241)
62 KOG1190 Polypyrimidine tract-b 99.3 1E-10 2.3E-15 120.8 16.1 164 225-418 297-490 (492)
63 KOG0126 Predicted RNA-binding 99.3 1.1E-12 2.5E-17 122.4 1.1 86 333-422 32-118 (219)
64 PLN03121 nucleic acid binding 99.3 1.9E-11 4.1E-16 120.3 9.6 76 225-320 5-80 (243)
65 KOG0149 Predicted RNA-binding 99.2 1.2E-11 2.7E-16 120.0 7.4 79 225-320 12-90 (247)
66 KOG0107 Alternative splicing f 99.2 1.5E-11 3.3E-16 114.4 7.4 75 225-321 10-85 (195)
67 KOG0121 Nuclear cap-binding pr 99.2 1.6E-11 3.5E-16 108.8 7.1 80 335-418 35-115 (153)
68 KOG0107 Alternative splicing f 99.2 1.6E-10 3.5E-15 107.7 13.0 76 335-419 9-85 (195)
69 KOG0125 Ataxin 2-binding prote 99.2 5.3E-11 1.2E-15 120.1 9.3 85 332-422 92-177 (376)
70 KOG1365 RNA-binding protein Fu 99.2 2.2E-11 4.7E-16 124.8 6.3 171 225-417 161-360 (508)
71 KOG0111 Cyclophilin-type pepti 99.2 2.5E-11 5.5E-16 116.4 5.3 83 333-419 7-90 (298)
72 smart00362 RRM_2 RNA recogniti 99.2 1.7E-10 3.7E-15 90.6 9.2 71 338-414 1-72 (72)
73 KOG0114 Predicted RNA-binding 99.2 1.1E-10 2.3E-15 100.2 8.2 79 223-321 16-95 (124)
74 KOG0130 RNA-binding protein RB 99.2 1.2E-10 2.6E-15 104.2 8.6 85 333-421 69-154 (170)
75 PLN03213 repressor of silencin 99.1 1.2E-10 2.5E-15 122.6 9.1 77 335-419 9-88 (759)
76 COG0724 RNA-binding proteins ( 99.1 1.9E-10 4E-15 112.8 10.1 79 336-418 115-194 (306)
77 PLN03121 nucleic acid binding 99.1 3E-10 6.6E-15 111.9 11.0 77 335-418 4-80 (243)
78 smart00360 RRM RNA recognition 99.1 2.6E-10 5.6E-15 89.1 8.6 70 341-414 1-71 (71)
79 KOG0126 Predicted RNA-binding 99.1 1E-11 2.2E-16 116.2 0.5 82 222-320 32-114 (219)
80 KOG0122 Translation initiation 99.1 1.6E-10 3.5E-15 112.7 8.7 80 224-320 188-268 (270)
81 smart00362 RRM_2 RNA recogniti 99.1 3.3E-10 7.2E-15 88.9 9.0 71 227-316 1-72 (72)
82 PLN03213 repressor of silencin 99.1 1.9E-10 4E-15 121.1 9.5 76 225-321 10-88 (759)
83 KOG0120 Splicing factor U2AF, 99.1 4.4E-10 9.5E-15 121.4 12.4 174 224-418 288-491 (500)
84 KOG0131 Splicing factor 3b, su 99.1 9.7E-11 2.1E-15 109.8 6.1 80 334-417 7-87 (203)
85 KOG0124 Polypyrimidine tract-b 99.1 1.3E-09 2.9E-14 111.2 14.2 80 223-319 208-288 (544)
86 cd00590 RRM RRM (RNA recogniti 99.1 1E-09 2.2E-14 86.6 10.0 73 338-415 1-74 (74)
87 KOG4212 RNA-binding protein hn 99.1 2.8E-09 6.1E-14 111.0 15.7 72 336-416 536-608 (608)
88 KOG0125 Ataxin 2-binding prote 99.1 2.2E-10 4.7E-15 115.8 7.4 78 225-321 96-174 (376)
89 KOG4211 Splicing factor hnRNP- 99.1 2.8E-09 6E-14 112.9 15.7 169 224-416 102-355 (510)
90 cd00590 RRM RRM (RNA recogniti 99.1 9.6E-10 2.1E-14 86.7 9.5 73 227-317 1-74 (74)
91 KOG0108 mRNA cleavage and poly 99.1 3.4E-10 7.3E-15 121.4 8.2 79 337-419 19-98 (435)
92 KOG4207 Predicted splicing fac 99.0 2.6E-10 5.5E-15 108.8 6.4 78 225-319 13-91 (256)
93 KOG0114 Predicted RNA-binding 99.0 8.8E-10 1.9E-14 94.6 8.8 79 334-419 16-95 (124)
94 smart00360 RRM RNA recognition 99.0 9.9E-10 2.1E-14 85.7 8.2 70 230-316 1-71 (71)
95 KOG4210 Nuclear localization s 99.0 3.1E-10 6.7E-15 116.3 6.6 177 224-421 87-266 (285)
96 KOG0120 Splicing factor U2AF, 99.0 6.8E-10 1.5E-14 119.9 8.8 173 220-419 170-369 (500)
97 KOG1190 Polypyrimidine tract-b 99.0 1.3E-08 2.8E-13 105.6 15.8 167 222-419 147-373 (492)
98 KOG0112 Large RNA-binding prot 98.9 5.3E-10 1.1E-14 125.0 5.0 161 220-419 367-531 (975)
99 KOG0130 RNA-binding protein RB 98.9 1.4E-09 3.1E-14 97.4 5.6 78 225-319 72-150 (170)
100 KOG0111 Cyclophilin-type pepti 98.9 9.6E-10 2.1E-14 105.7 4.2 83 224-323 9-92 (298)
101 KOG0108 mRNA cleavage and poly 98.9 3.2E-09 6.9E-14 114.0 7.7 78 226-320 19-97 (435)
102 KOG0415 Predicted peptidyl pro 98.9 6.1E-09 1.3E-13 106.2 9.3 86 332-421 235-321 (479)
103 KOG0128 RNA-binding protein SA 98.9 3.8E-10 8.3E-15 125.7 0.4 152 220-418 662-814 (881)
104 smart00361 RRM_1 RNA recogniti 98.9 9.1E-09 2E-13 83.4 7.9 60 350-413 2-69 (70)
105 KOG4454 RNA binding protein (R 98.8 6E-10 1.3E-14 107.1 0.7 137 225-403 9-146 (267)
106 KOG1365 RNA-binding protein Fu 98.8 2.3E-08 5E-13 102.9 10.2 176 223-416 58-240 (508)
107 PF13893 RRM_5: RNA recognitio 98.8 2E-08 4.4E-13 77.4 7.0 55 242-318 1-56 (56)
108 PF13893 RRM_5: RNA recognitio 98.8 3.5E-08 7.6E-13 76.1 8.0 55 353-416 1-56 (56)
109 KOG1456 Heterogeneous nuclear 98.7 2.3E-07 4.9E-12 95.5 14.5 162 224-419 30-199 (494)
110 KOG0132 RNA polymerase II C-te 98.7 2.4E-08 5.3E-13 110.4 7.8 76 223-321 419-495 (894)
111 KOG0153 Predicted RNA-binding 98.7 3.6E-08 7.9E-13 100.6 8.0 76 222-320 225-302 (377)
112 KOG4208 Nucleolar RNA-binding 98.7 7.3E-08 1.6E-12 92.4 8.4 86 331-419 44-130 (214)
113 KOG4676 Splicing factor, argin 98.6 1.1E-08 2.5E-13 105.4 2.0 171 226-418 8-225 (479)
114 KOG0415 Predicted peptidyl pro 98.6 4.6E-08 9.9E-13 99.9 6.2 81 223-320 237-318 (479)
115 KOG0109 RNA-binding protein LA 98.6 6E-08 1.3E-12 97.0 6.4 75 337-423 3-78 (346)
116 KOG4206 Spliceosomal protein s 98.6 1.2E-07 2.7E-12 92.1 8.2 80 335-421 8-92 (221)
117 smart00361 RRM_1 RNA recogniti 98.6 1.7E-07 3.7E-12 75.9 7.8 62 239-315 2-69 (70)
118 KOG4205 RNA-binding protein mu 98.6 4E-08 8.8E-13 101.4 4.9 84 335-422 5-88 (311)
119 KOG1456 Heterogeneous nuclear 98.6 1.8E-06 3.9E-11 89.0 16.6 160 222-408 284-474 (494)
120 KOG0146 RNA-binding protein ET 98.5 7.5E-08 1.6E-12 95.2 4.7 97 310-420 2-102 (371)
121 KOG0153 Predicted RNA-binding 98.4 5.8E-07 1.2E-11 92.0 8.0 76 333-418 225-302 (377)
122 KOG0151 Predicted splicing reg 98.4 4.7E-07 1E-11 99.5 7.5 89 217-319 166-255 (877)
123 KOG0132 RNA polymerase II C-te 98.4 5.5E-07 1.2E-11 99.9 7.6 75 335-419 420-495 (894)
124 KOG0226 RNA-binding proteins [ 98.4 3.2E-07 6.9E-12 90.4 4.9 165 226-415 97-266 (290)
125 KOG4661 Hsp27-ERE-TATA-binding 98.4 7.2E-07 1.6E-11 95.8 7.7 80 336-419 405-485 (940)
126 KOG0116 RasGAP SH3 binding pro 98.4 2.9E-06 6.2E-11 91.0 11.7 80 336-419 288-367 (419)
127 KOG4208 Nucleolar RNA-binding 98.3 1.1E-06 2.5E-11 84.3 7.3 79 225-320 49-129 (214)
128 KOG1457 RNA binding protein (c 98.3 4.4E-06 9.5E-11 81.1 10.3 90 335-428 33-127 (284)
129 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.3E-06 2.8E-11 93.9 6.9 81 223-320 403-484 (940)
130 KOG4660 Protein Mei2, essentia 98.3 1.3E-06 2.7E-11 94.4 6.4 164 222-418 72-249 (549)
131 KOG4307 RNA binding protein RB 98.2 2.5E-06 5.4E-11 93.7 8.2 172 225-419 311-514 (944)
132 KOG0533 RRM motif-containing p 98.2 3.5E-06 7.7E-11 84.1 8.0 80 224-321 82-162 (243)
133 KOG0533 RRM motif-containing p 98.2 4.3E-06 9.4E-11 83.5 8.4 79 336-419 83-162 (243)
134 KOG0116 RasGAP SH3 binding pro 98.1 4.9E-06 1.1E-10 89.3 7.6 81 222-319 285-365 (419)
135 KOG4209 Splicing factor RNPS1, 98.1 2.8E-06 6E-11 84.7 5.4 80 223-319 99-178 (231)
136 KOG4209 Splicing factor RNPS1, 98.1 1E-05 2.2E-10 80.8 8.1 83 333-419 98-180 (231)
137 PF04059 RRM_2: RNA recognitio 98.1 2.5E-05 5.5E-10 67.5 9.3 80 337-418 2-86 (97)
138 KOG2193 IGF-II mRNA-binding pr 98.0 1.3E-06 2.8E-11 91.2 0.1 151 227-419 3-157 (584)
139 KOG1548 Transcription elongati 98.0 1.8E-05 3.9E-10 81.3 7.9 79 336-419 134-221 (382)
140 PF11608 Limkain-b1: Limkain b 97.8 0.00011 2.4E-09 61.4 7.5 69 337-418 3-76 (90)
141 KOG0151 Predicted splicing reg 97.7 5.3E-05 1.1E-09 83.8 6.8 81 335-419 173-257 (877)
142 KOG0106 Alternative splicing f 97.7 4E-05 8.6E-10 75.2 4.9 71 337-419 2-73 (216)
143 KOG4454 RNA binding protein (R 97.7 1.8E-05 4E-10 76.7 2.2 79 333-417 6-85 (267)
144 KOG0128 RNA-binding protein SA 97.6 4.6E-06 9.9E-11 93.8 -4.0 162 226-408 572-735 (881)
145 KOG4660 Protein Mei2, essentia 97.6 5.7E-05 1.2E-09 81.9 4.4 71 333-412 72-143 (549)
146 KOG0226 RNA-binding proteins [ 97.5 0.00011 2.5E-09 72.7 5.2 79 224-319 189-268 (290)
147 PF04059 RRM_2: RNA recognitio 97.5 0.00067 1.5E-08 58.7 9.1 76 226-318 2-84 (97)
148 PF11608 Limkain-b1: Limkain b 97.5 0.00039 8.5E-09 58.1 7.2 67 226-319 3-75 (90)
149 PF08777 RRM_3: RNA binding mo 97.2 0.001 2.2E-08 58.5 6.6 68 337-414 2-75 (105)
150 KOG1855 Predicted RNA-binding 97.1 0.0006 1.3E-08 72.0 4.6 82 216-304 222-306 (484)
151 KOG4210 Nuclear localization s 97.1 0.00039 8.5E-09 71.6 3.3 80 225-321 184-264 (285)
152 COG5175 MOT2 Transcriptional r 96.9 0.0011 2.4E-08 68.0 4.8 113 226-357 115-241 (480)
153 KOG1995 Conserved Zn-finger pr 96.9 0.00077 1.7E-08 70.0 3.7 83 333-419 63-154 (351)
154 KOG4849 mRNA cleavage factor I 96.9 0.0016 3.5E-08 67.1 5.8 80 335-416 79-159 (498)
155 PF08777 RRM_3: RNA binding mo 96.9 0.003 6.6E-08 55.5 6.8 54 226-302 2-55 (105)
156 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0027 5.9E-08 48.8 5.2 52 226-301 2-53 (53)
157 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.007 1.5E-07 52.8 7.8 82 225-318 6-89 (100)
158 KOG4307 RNA binding protein RB 96.7 0.0041 8.9E-08 69.2 7.5 75 337-415 868-943 (944)
159 PF12220 U1snRNP70_N: U1 small 96.6 0.0023 5.1E-08 55.1 4.0 44 107-151 10-53 (94)
160 KOG1995 Conserved Zn-finger pr 96.6 0.0026 5.7E-08 66.1 5.0 89 223-320 64-153 (351)
161 KOG3152 TBP-binding protein, a 96.3 0.0038 8.3E-08 62.2 3.7 84 224-312 73-157 (278)
162 KOG0115 RNA-binding protein p5 96.2 0.0088 1.9E-07 59.7 6.1 102 297-419 7-114 (275)
163 KOG1855 Predicted RNA-binding 95.8 0.12 2.6E-06 55.2 12.2 66 334-403 229-307 (484)
164 PF14605 Nup35_RRM_2: Nup53/35 95.7 0.027 6E-07 43.2 5.3 52 337-399 2-53 (53)
165 KOG0129 Predicted RNA-binding 95.6 0.034 7.3E-07 60.5 7.8 63 223-302 368-431 (520)
166 KOG2314 Translation initiation 95.6 0.021 4.6E-07 62.5 6.2 77 224-318 57-141 (698)
167 PF08952 DUF1866: Domain of un 95.6 0.033 7.1E-07 51.6 6.5 70 226-320 28-106 (146)
168 KOG0112 Large RNA-binding prot 95.3 0.021 4.6E-07 65.5 5.3 75 224-321 454-531 (975)
169 KOG4676 Splicing factor, argin 95.2 0.026 5.6E-07 59.4 5.0 78 337-418 8-88 (479)
170 COG5175 MOT2 Transcriptional r 95.1 0.055 1.2E-06 56.0 7.0 81 335-419 113-203 (480)
171 KOG4849 mRNA cleavage factor I 95.1 0.022 4.7E-07 59.0 4.0 77 225-318 80-159 (498)
172 KOG2314 Translation initiation 95.0 0.076 1.6E-06 58.3 8.0 77 336-417 58-142 (698)
173 KOG2416 Acinus (induces apopto 94.9 0.094 2E-06 57.9 8.5 80 331-419 439-522 (718)
174 KOG3152 TBP-binding protein, a 94.7 0.021 4.6E-07 57.0 2.7 71 336-410 74-157 (278)
175 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.12 2.6E-06 45.1 6.9 78 336-418 6-91 (100)
176 KOG2202 U2 snRNP splicing fact 94.6 0.016 3.5E-07 57.9 1.6 61 240-318 83-145 (260)
177 KOG1996 mRNA splicing factor [ 94.5 0.092 2E-06 53.5 6.6 65 239-319 300-365 (378)
178 PF08675 RNA_bind: RNA binding 94.3 0.19 4.2E-06 42.2 7.1 51 226-302 10-60 (87)
179 KOG2202 U2 snRNP splicing fact 94.2 0.016 3.5E-07 57.9 0.6 53 364-417 93-146 (260)
180 KOG2416 Acinus (induces apopto 94.1 0.036 7.9E-07 61.0 3.1 74 222-318 441-519 (718)
181 PF08952 DUF1866: Domain of un 94.0 0.23 5E-06 46.1 7.6 74 334-419 25-107 (146)
182 KOG2193 IGF-II mRNA-binding pr 93.7 0.059 1.3E-06 57.2 3.6 73 337-419 2-76 (584)
183 KOG1996 mRNA splicing factor [ 93.5 0.19 4.1E-06 51.3 6.7 64 350-417 300-365 (378)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 93.0 0.095 2.1E-06 50.3 3.7 80 225-319 7-96 (176)
185 KOG4285 Mitotic phosphoprotein 92.4 0.5 1.1E-05 48.5 7.9 72 226-321 198-270 (350)
186 PF10309 DUF2414: Protein of u 92.4 0.65 1.4E-05 36.9 6.9 58 336-402 5-62 (62)
187 PF15023 DUF4523: Protein of u 91.7 0.63 1.4E-05 43.0 7.0 71 225-319 86-160 (166)
188 PF10567 Nab6_mRNP_bdg: RNA-re 91.6 9.2 0.0002 39.5 15.8 171 222-403 12-212 (309)
189 KOG2135 Proteins containing th 91.3 0.1 2.3E-06 56.2 1.9 75 223-320 370-445 (526)
190 PF15023 DUF4523: Protein of u 90.5 1.1 2.4E-05 41.5 7.3 74 334-418 84-161 (166)
191 PF07292 NID: Nmi/IFP 35 domai 90.3 0.3 6.5E-06 41.6 3.4 72 287-358 1-74 (88)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 89.8 0.71 1.5E-05 44.4 5.9 81 335-419 6-98 (176)
193 PF10309 DUF2414: Protein of u 89.7 1.4 3.1E-05 35.0 6.6 51 226-302 6-60 (62)
194 PF08675 RNA_bind: RNA binding 88.8 2.2 4.7E-05 36.1 7.2 54 337-403 10-63 (87)
195 KOG2068 MOT2 transcription fac 88.8 0.22 4.8E-06 51.8 1.8 81 226-320 78-162 (327)
196 KOG0804 Cytoplasmic Zn-finger 87.1 2.6 5.7E-05 45.6 8.5 67 225-310 74-142 (493)
197 PF07576 BRAP2: BRCA1-associat 85.5 5.7 0.00012 35.3 8.6 66 226-310 14-81 (110)
198 KOG0115 RNA-binding protein p5 85.2 0.97 2.1E-05 45.5 3.9 75 226-318 32-111 (275)
199 PF07576 BRAP2: BRCA1-associat 83.8 16 0.00035 32.4 10.7 78 335-417 12-93 (110)
200 PF04847 Calcipressin: Calcipr 82.5 3 6.5E-05 40.4 6.0 60 238-320 8-70 (184)
201 KOG2591 c-Mpl binding protein, 82.2 4.3 9.4E-05 45.0 7.6 67 336-411 175-244 (684)
202 KOG2253 U1 snRNP complex, subu 80.5 1.4 3.1E-05 49.6 3.3 70 333-415 37-107 (668)
203 KOG2135 Proteins containing th 80.0 0.95 2.1E-05 49.1 1.7 74 336-419 372-446 (526)
204 KOG2068 MOT2 transcription fac 79.7 0.85 1.8E-05 47.6 1.2 80 336-419 77-163 (327)
205 KOG4483 Uncharacterized conser 79.6 5.1 0.00011 42.8 6.8 66 223-311 389-454 (528)
206 PF14111 DUF4283: Domain of un 79.0 2.2 4.8E-05 39.1 3.7 85 283-374 54-139 (153)
207 KOG2253 U1 snRNP complex, subu 78.2 1.1 2.4E-05 50.4 1.6 110 224-359 39-158 (668)
208 KOG2591 c-Mpl binding protein, 76.6 4.5 9.7E-05 44.9 5.6 66 224-313 174-244 (684)
209 PF03880 DbpA: DbpA RNA bindin 75.6 12 0.00025 30.5 6.7 61 347-416 12-74 (74)
210 KOG2891 Surface glycoprotein [ 74.0 0.78 1.7E-05 46.5 -0.8 32 226-257 150-193 (445)
211 KOG4285 Mitotic phosphoprotein 71.8 13 0.00028 38.5 7.2 72 337-419 198-270 (350)
212 PF04847 Calcipressin: Calcipr 67.8 12 0.00026 36.3 5.8 61 349-419 8-71 (184)
213 KOG0804 Cytoplasmic Zn-finger 66.5 27 0.00058 38.1 8.5 68 336-408 74-142 (493)
214 KOG4574 RNA-binding protein (c 64.3 4.2 9.1E-05 47.2 2.2 72 338-419 300-374 (1007)
215 KOG2318 Uncharacterized conser 62.1 29 0.00064 39.0 8.0 86 333-418 171-307 (650)
216 PF11767 SET_assoc: Histone ly 61.0 36 0.00078 27.4 6.4 54 236-315 11-65 (66)
217 KOG4574 RNA-binding protein (c 59.5 5.9 0.00013 46.1 2.2 72 226-320 299-373 (1007)
218 KOG2318 Uncharacterized conser 56.6 26 0.00055 39.4 6.4 96 222-317 171-302 (650)
219 KOG4483 Uncharacterized conser 53.5 23 0.00051 38.0 5.3 66 336-411 391-456 (528)
220 KOG2891 Surface glycoprotein [ 46.2 22 0.00049 36.4 3.7 36 335-374 148-195 (445)
221 PF11767 SET_assoc: Histone ly 45.2 89 0.0019 25.2 6.3 54 347-413 11-65 (66)
222 KOG4410 5-formyltetrahydrofola 42.4 41 0.00089 34.7 4.9 50 223-295 328-378 (396)
223 PF03880 DbpA: DbpA RNA bindin 41.8 93 0.002 25.1 6.2 57 236-318 12-74 (74)
224 PF03468 XS: XS domain; Inter 39.5 28 0.0006 31.2 2.9 59 227-305 10-78 (116)
225 KOG4410 5-formyltetrahydrofola 38.8 52 0.0011 34.0 5.0 48 336-392 330-377 (396)
226 KOG4008 rRNA processing protei 38.0 52 0.0011 33.1 4.7 34 224-257 39-72 (261)
227 PF10567 Nab6_mRNP_bdg: RNA-re 31.9 1.1E+02 0.0023 32.0 5.9 80 335-418 14-107 (309)
228 KOG0156 Cytochrome P450 CYP2 s 31.2 67 0.0014 35.9 4.8 59 228-313 35-97 (489)
229 PF03468 XS: XS domain; Inter 29.1 76 0.0016 28.4 3.9 56 338-400 10-75 (116)
230 PF07530 PRE_C2HC: Associated 28.7 1.2E+02 0.0027 24.4 4.7 62 351-418 2-64 (68)
231 KOG1295 Nonsense-mediated deca 27.2 71 0.0015 34.3 3.9 71 225-310 7-79 (376)
232 KOG4365 Uncharacterized conser 27.1 17 0.00038 39.4 -0.6 78 337-419 4-82 (572)
233 KOG4019 Calcineurin-mediated s 26.3 52 0.0011 31.9 2.5 74 225-321 10-90 (193)
234 smart00596 PRE_C2HC PRE_C2HC d 25.1 1.3E+02 0.0028 24.6 4.2 61 351-417 2-63 (69)
235 COG5193 LHP1 La protein, small 21.1 39 0.00085 36.4 0.6 64 335-400 173-244 (438)
236 PF15513 DUF4651: Domain of un 20.9 1.7E+02 0.0036 23.5 3.9 18 240-257 9-26 (62)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=9.2e-29 Score=258.94 Aligned_cols=169 Identities=21% Similarity=0.321 Sum_probs=149.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.+. .++.++|||||+|.++++|..||
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~-----------------~tg~srGyaFVeF~~~e~A~~Ai~ 167 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY-----------------KTGYSFGYAFVDFGSEADSQRAIK 167 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCccCcEEEEEEccHHHHHHHHH
Confidence 346899999999999999999999999999999996654 24558899999999999999999
Q ss_pred HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCC
Q 008920 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~s 381 (548)
.||+..|.++.|.|.++.+... .....+|||+|||+.+++++|+++|+.| |.|..|.|++|..++.+
T Consensus 168 ~LnG~~l~gr~i~V~~a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~f----G~V~~v~i~~d~~tg~~ 234 (346)
T TIGR01659 168 NLNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GQIVQKNILRDKLTGTP 234 (346)
T ss_pred HcCCCccCCceeeeeccccccc---------ccccceeEEeCCCCcccHHHHHHHHHhc----CCEEEEEEeecCCCCcc
Confidence 6999999999999999864321 1235689999999999999999999999 89999999999989999
Q ss_pred ceEEEEEECCHHHHHHHHHHcC-CccCC--eEEEEEeeecCCC
Q 008920 382 KGIAYVLFKTREAANLVIKRRN-LKLRD--RELRLSHAQQNCT 421 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~V~~Ak~~~~ 421 (548)
+|||||+|.+.++|+.||..|+ ..|.| ++|.|.++.....
T Consensus 235 kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 235 RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 9999999999999999999998 66655 7999999987643
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.5e-27 Score=259.87 Aligned_cols=175 Identities=18% Similarity=0.358 Sum_probs=150.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+.+++++|+++|..||.|.+|+|+.++. +|.++|||||+|.+.++|+.|| .
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~-----------------TgkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC-----------------CCCcCCeEEEEeCcHHHHHHHHHh
Confidence 457999999999999999999999999999999976542 3558899999999999999999 5
Q ss_pred hcceeecCceeEeecCCCcccccC--CCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCC
Q 008920 303 FNMAVIGGNHIRLDRACPPRKKLK--GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~--~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~ 380 (548)
|||..|.|+.|.|.+......... ..........++|||+|||+++++++|+++|+.| |.|..|+|++|+.+|.
T Consensus 169 lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F----G~I~svrl~~D~~tgk 244 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRG 244 (612)
T ss_pred cCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCC
Confidence 999999999999987543211100 0001112245799999999999999999999999 9999999999999999
Q ss_pred CceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 381 GKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 381 srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
++|||||+|.+.++|..||..|| ..|+|+.|+|.++..+
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999999998 9999999999999865
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=7.9e-27 Score=253.10 Aligned_cols=179 Identities=24% Similarity=0.368 Sum_probs=153.4
Q ss_pred cCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008920 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 220 ~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
+.+...++|||+|||+.+++++|.++|+.||.|..|+|+.+.. ++.++|||||+|.+.++|.+
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~-----------------~~~skg~afVeF~~~e~A~~ 146 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN-----------------SRRSKGVAYVEFYDVESVIK 146 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC-----------------CCCcceEEEEEECCHHHHHH
Confidence 3455678999999999999999999999999999999966432 34578999999999999999
Q ss_pred HHHhcceeecCceeEeecCCCcccccCC---CCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecC
Q 008920 300 ALAFNMAVIGGNHIRLDRACPPRKKLKG---EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (548)
Q Consensus 300 Al~lng~~~~gr~I~V~~a~~~~k~~~~---~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~ 376 (548)
||.|+|..|.|+.|.|.++......... ..........+|||+|||+.+++++|.++|..| |.|..|.|+.+.
T Consensus 147 Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~ 222 (457)
T TIGR01622 147 ALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDP 222 (457)
T ss_pred HHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcC
Confidence 9999999999999999886543221110 001112336899999999999999999999999 899999999999
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 377 HMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 377 ~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
.+|.++|||||+|.+.++|..||..|+ ..|.|+.|.|.|+...
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999999999888 9999999999998743
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=4.3e-26 Score=238.85 Aligned_cols=165 Identities=18% Similarity=0.331 Sum_probs=146.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
..+|||+|||+.+++++|.++|+.||+|.+|+|+.+.. +|.++|||||+|.+.++|..|| .|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~-----------------~g~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV-----------------TGQSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC-----------------CCccceEEEEEECcHHHHHHHHhhc
Confidence 47999999999999999999999999999999976542 3558899999999999999999 59
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008920 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
||..|.|+.|.|.++.+... .....+|||+|||..+++++|..+|..| |.|..+.|+.+..++.++|
T Consensus 66 ~g~~l~g~~i~v~~a~~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g 132 (352)
T TIGR01661 66 NGLRLQNKTIKVSYARPSSD---------SIKGANLYVSGLPKTMTQHELESIFSPF----GQIITSRILSDNVTGLSKG 132 (352)
T ss_pred ccEEECCeeEEEEeeccccc---------ccccceEEECCccccCCHHHHHHHHhcc----CCEEEEEEEecCCCCCcCc
Confidence 99999999999999865321 2235689999999999999999999999 8999999999988899999
Q ss_pred EEEEEECCHHHHHHHHHHcC-CccCC--eEEEEEeeecC
Q 008920 384 IAYVLFKTREAANLVIKRRN-LKLRD--RELRLSHAQQN 419 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~V~~Ak~~ 419 (548)
||||+|.+.++|..||..|+ ..+.| ..|.|.|+...
T Consensus 133 ~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 133 VGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 99999999999999998888 76666 67899998754
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=1.4e-25 Score=234.94 Aligned_cols=174 Identities=24% Similarity=0.338 Sum_probs=145.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||..+++++|..+|..||.|..+.|+.+.. ++.++|||||+|.+.++|+.|| .|
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----------------~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV-----------------TGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC-----------------CCCcCcEEEEEECCHHHHHHHHHHh
Confidence 46899999999999999999999999999999865442 2347799999999999999999 69
Q ss_pred cceeecC--ceeEeecCCCcccccCC--------------C---------------------------------------
Q 008920 304 NMAVIGG--NHIRLDRACPPRKKLKG--------------E--------------------------------------- 328 (548)
Q Consensus 304 ng~~~~g--r~I~V~~a~~~~k~~~~--------------~--------------------------------------- 328 (548)
||..+.| ..|.|.++..+...... .
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9999887 57888887543210000 0
Q ss_pred ------------CC------------------CcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC
Q 008920 329 ------------DA------------------PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (548)
Q Consensus 329 ------------~~------------------~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t 378 (548)
.. .......+|||+|||+.+++++|+++|+.| |.|..|+|++|..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f----G~v~~v~i~~d~~t 307 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF----GAVQNVKIIRDLTT 307 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeEcCCC
Confidence 00 000112369999999999999999999999 99999999999999
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 379 RVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 379 g~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
|.++|||||+|.+.++|..||..|| ..|.|+.|+|.|+..+
T Consensus 308 ~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 308 NQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred CCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 9999999999999999999999888 9999999999998765
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=2.5e-24 Score=236.45 Aligned_cols=173 Identities=19% Similarity=0.381 Sum_probs=143.1
Q ss_pred cCCCcccEEEEcCCCCCCcHHHHHHHhhhcC------------CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceE
Q 008920 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFG------------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287 (548)
Q Consensus 220 ~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG------------~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~A 287 (548)
......++|||||||+.+|+++|.+||..|+ .|..|.+ +..+|||
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~kg~a 226 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----------------------NKEKNFA 226 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----------------------CCCCCEE
Confidence 4456779999999999999999999999852 3333333 2366999
Q ss_pred EEEecCHHHHHHHHHhcceeecCceeEeecCCCccccc-------CC-------------CCCCcCCCccEEEEeCCCCC
Q 008920 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKL-------KG-------------EDAPLYDIKKTVFVGNLPFD 347 (548)
Q Consensus 288 FV~F~s~e~A~~Al~lng~~~~gr~I~V~~a~~~~k~~-------~~-------------~~~~~~~~~~tLfV~NLp~~ 347 (548)
||+|.+.++|..||+|+|..|.|+.|.|.+........ .. ......+..++|||+|||+.
T Consensus 227 fVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 306 (509)
T TIGR01642 227 FLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLY 306 (509)
T ss_pred EEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCC
Confidence 99999999999999999999999999997643211000 00 00112344679999999999
Q ss_pred CCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 348 ~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
+++++|.++|..| |.|..|.|+.+..+|.++|||||+|.+.++|..||..|+ ..|+|+.|.|.++...
T Consensus 307 ~~~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 307 LGEDQIKELLESF----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CCHHHHHHHHHhc----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999999999 899999999999999999999999999999999999888 9999999999999754
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=3.9e-24 Score=238.29 Aligned_cols=164 Identities=23% Similarity=0.389 Sum_probs=144.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (548)
+|||+|||.++|+++|.++|+.||.|.+|+|+.+.. ++.+.|||||+|.+.++|+.|| .+|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~-----------------t~~s~G~afV~F~~~~~A~~Al~~ln~ 64 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV-----------------TRRSLGYGYVNFQNPADAERALETMNF 64 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 799999999999999999999999999999977653 3457899999999999999999 5899
Q ss_pred eeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEE
Q 008920 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (548)
Q Consensus 306 ~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~A 385 (548)
..|.|+.|+|.|+..... .......+|||+|||.++++++|+++|+.| |.|..|.|+.+ .+|.++|||
T Consensus 65 ~~i~gk~i~i~~s~~~~~-------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~----G~i~~~~i~~~-~~g~skg~a 132 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPS-------LRRSGVGNIFVKNLDKSVDNKALFDTFSKF----GNILSCKVATD-ENGKSRGYG 132 (562)
T ss_pred CEECCeeEEeeccccccc-------ccccCCCceEEcCCCccCCHHHHHHHHHhc----CCcceeEeeec-CCCCcccEE
Confidence 999999999999753211 112234689999999999999999999999 89999999998 478899999
Q ss_pred EEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 386 YVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 386 FV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
||.|.+.++|..|+..++ ..+.|+.|.|.+....
T Consensus 133 fV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 133 FVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred EEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 999999999999998888 9999999999876543
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.8e-24 Score=209.04 Aligned_cols=169 Identities=24% Similarity=0.411 Sum_probs=148.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
..-|||+.|...++-++|++.|.+||+|..++|++|. ++++++||+||.|-..++|+.|| .|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~-----------------~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM-----------------NTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecc-----------------cCCcccceeEEeccchHHHHHHHHHh
Confidence 4679999999999999999999999999999996654 46679999999999999999999 69
Q ss_pred cceeecCceeEeecCCCcccccCCCC-------CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecC
Q 008920 304 NMAVIGGNHIRLDRACPPRKKLKGED-------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~-------~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~ 376 (548)
||..|++|.|+..|+..+........ .......++|||+|++..+++++|++.|+.| |.|..|||..+
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f----G~I~EVRvFk~- 199 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF----GPIQEVRVFKD- 199 (321)
T ss_pred CCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC----CcceEEEEecc-
Confidence 99999999999999986542111111 2334567899999999999999999999999 99999999998
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008920 377 HMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 377 ~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
+||+||.|.+.|+|..||..+| ..|.|+.+++.|.+...
T Consensus 200 -----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 200 -----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred -----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 6899999999999999997777 99999999999998753
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=1.9e-23 Score=232.68 Aligned_cols=173 Identities=24% Similarity=0.371 Sum_probs=148.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||.++|+++|.++|+.||.|.+|.|+.+. +|.++|||||.|.+.++|..|+ .
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~------------------~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG------------------SGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHHH
Confidence 45789999999999999999999999999999986543 3457899999999999999999 5
Q ss_pred hcceeec----CceeEeecCCCcccccCC---------CCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE
Q 008920 303 FNMAVIG----GNHIRLDRACPPRKKLKG---------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (548)
Q Consensus 303 lng~~~~----gr~I~V~~a~~~~k~~~~---------~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~ 369 (548)
|++..|. |+.|.|.++......... ..........+|||+||++.+++++|+++|+.| |.|.+
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~----G~i~~ 314 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC----GEITS 314 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc----CCeEE
Confidence 9999999 999999988654221000 001112345789999999999999999999999 99999
Q ss_pred EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 370 VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 370 VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
|.|+.| .+|.++|||||+|.+.++|.+||..++ ..|+|+.|.|.||...
T Consensus 315 ~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 315 AKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred EEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999999 789999999999999999999998888 9999999999999864
No 10
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=195.76 Aligned_cols=170 Identities=25% Similarity=0.412 Sum_probs=149.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
...||||+||+..++++.|+++|-++|+|.+|.|+.+..+ ..++|||||+|.++++|+.|+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~-----------------~~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT-----------------QKHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc-----------------ccccceeEEEEechhhhHHHHHH
Confidence 3579999999999999999999999999999999665543 2477999999999999999996
Q ss_pred hcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE-EEEeecCCCCCC
Q 008920 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVG 381 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~-VrI~~d~~tg~s 381 (548)
||+..|.|++|+|..+... ....+.+..|||+||.+.+++..|+.+|+.| |.|.. ..|++++.||.+
T Consensus 71 ln~VkLYgrpIrv~kas~~--------~~nl~vganlfvgNLd~~vDe~~L~dtFsaf----G~l~~~P~i~rd~~tg~~ 138 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKASAH--------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAF----GVLISPPKIMRDPDTGNP 138 (203)
T ss_pred HHHHHhcCceeEEEecccc--------cccccccccccccccCcchhHHHHHHHHHhc----cccccCCcccccccCCCC
Confidence 8999999999999998622 1223455889999999999999999999999 66654 478999999999
Q ss_pred ceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCCCC
Q 008920 382 KGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNCTP 422 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~~~ 422 (548)
+|||||.|.+.+.+.+|+..++ ..++.++|+|.|+......
T Consensus 139 ~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 139 KGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999998 8899999999999876443
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=216.72 Aligned_cols=176 Identities=21% Similarity=0.377 Sum_probs=149.2
Q ss_pred CcCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008920 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 219 ~~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
+..+.+.-.+|||-||..++|.+|+.+|++||.|.+|.|+.|.. ++.++|||||.|.+.++|.
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~-----------------t~~s~gcCFv~~~trk~a~ 90 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS-----------------TGQSKGCCFVKYYTRKEAD 90 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc-----------------cCcccceEEEEeccHHHHH
Confidence 33344556799999999999999999999999999999977664 3568899999999999999
Q ss_pred HHH-Hh-cceeecCc--eeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEee
Q 008920 299 AAL-AF-NMAVIGGN--HIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (548)
Q Consensus 299 ~Al-~l-ng~~~~gr--~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~ 374 (548)
+|+ +| |...|.|. +|.|.++...... ....++|||+-|+..++|.+|+++|+.| |.|++|.|++
T Consensus 91 ~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er--------~~~e~KLFvg~lsK~~te~evr~iFs~f----G~Ied~~ilr 158 (510)
T KOG0144|consen 91 EAINALHNQKTLPGMHHPVQVKYADGERER--------IVEERKLFVGMLSKQCTENEVREIFSRF----GHIEDCYILR 158 (510)
T ss_pred HHHHHhhcccccCCCCcceeecccchhhhc--------cccchhhhhhhccccccHHHHHHHHHhh----Cccchhhhee
Confidence 999 56 45667774 7788887643221 2346889999999999999999999999 9999999999
Q ss_pred cCCCCCCceEEEEEECCHHHHHHHHHHcC--CccCC--eEEEEEeeecCCCCCC
Q 008920 375 HPHMRVGKGIAYVLFKTREAANLVIKRRN--LKLRD--RELRLSHAQQNCTPSK 424 (548)
Q Consensus 375 d~~tg~srG~AFV~F~~~e~A~~Al~~ln--~~l~G--r~I~V~~Ak~~~~~~~ 424 (548)
|. .+.++|||||.|.+.+.|..||+.|| ..|.| .+|.|.||.+......
T Consensus 159 d~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 159 DP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred cc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 95 69999999999999999999999998 88888 6899999987644333
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=1.6e-22 Score=221.39 Aligned_cols=164 Identities=21% Similarity=0.257 Sum_probs=136.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH--
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-- 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-- 302 (548)
+++|||+|||+++++++|.++|+.||.|.+|.|+. ++|||||+|.+.++|+.||.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----------------------~k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----------------------GKRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----------------------CCCEEEEEeCchHHHHHHHHHh
Confidence 58999999999999999999999999999998842 45899999999999999995
Q ss_pred -hcceeecCceeEeecCCCcccccCCC---CCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC
Q 008920 303 -FNMAVIGGNHIRLDRACPPRKKLKGE---DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~~k~~~~~---~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t 378 (548)
+++..|.|+.|.|.++.......... .........+|||+||++.+++++|.++|+.| |.|..|.|+++..
T Consensus 59 ~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~----G~V~~v~i~~~~~- 133 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY----GKVLRIVTFTKNN- 133 (481)
T ss_pred hcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc----CCEEEEEEEecCC-
Confidence 47899999999999986543111110 01111233579999999999999999999999 9999999987642
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcC-CccCC--eEEEEEeeecC
Q 008920 379 RVGKGIAYVLFKTREAANLVIKRRN-LKLRD--RELRLSHAQQN 419 (548)
Q Consensus 379 g~srG~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~V~~Ak~~ 419 (548)
.|+|||+|.+.++|.+|+..|| ..|.| +.|+|.|+++.
T Consensus 134 ---~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 134 ---VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred ---ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 4799999999999999999888 77754 68999999864
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=5.5e-23 Score=216.38 Aligned_cols=172 Identities=22% Similarity=0.324 Sum_probs=148.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (548)
.||||++||+.++.++|.++|+.+|+|..+.+.+++ + .+.++||+||.|.-.++++.|| +++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~----g-------------s~~~RGfgfVtFam~ED~qrA~~e~~ 68 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNK----G-------------SSEKRGFGFVTFAMEEDVQRALAETE 68 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCC----C-------------cccccCccceeeehHhHHHHHHHHhh
Confidence 699999999999999999999999999999885533 2 3358899999999999999999 589
Q ss_pred ceeecCceeEeecCCCcccccCCCC-----------------CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCe
Q 008920 305 MAVIGGNHIRLDRACPPRKKLKGED-----------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~~k~~~~~~-----------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I 367 (548)
+..|.|+.|+|+.+........... .....+...|.|+||||.+...+|..+|+.| |.|
T Consensus 69 ~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V 144 (678)
T KOG0127|consen 69 QSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF----GKV 144 (678)
T ss_pred cCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc----ceE
Confidence 9999999999999976432221000 1112336789999999999999999999999 999
Q ss_pred EEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 368 EAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 368 ~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
..|.|++..+.+.+ |||||+|....+|..||+.+| ..|.||+|-|.||.+.
T Consensus 145 ~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 145 VEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred EEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 99999988776666 999999999999999999999 9999999999999876
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.5e-22 Score=213.03 Aligned_cols=173 Identities=31% Similarity=0.433 Sum_probs=146.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-h
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (548)
...|+|+||||.|.+.+|..+|+.||.|..|.|++.. +|.-+|||||.|....+|..||+ +
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~------------------dgklcGFaFV~fk~~~dA~~Al~~~ 178 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK------------------DGKLCGFAFVQFKEKKDAEKALEFF 178 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC------------------CCCccceEEEEEeeHHHHHHHHHhc
Confidence 4679999999999999999999999999999984322 45577999999999999999995 9
Q ss_pred cceeecCceeEeecCCCccccc---------------------------------------------CC---------CC
Q 008920 304 NMAVIGGNHIRLDRACPPRKKL---------------------------------------------KG---------ED 329 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~---------------------------------------------~~---------~~ 329 (548)
|+..|.||+|-|+|+.+...-. .+ ..
T Consensus 179 N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~ 258 (678)
T KOG0127|consen 179 NGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEES 258 (678)
T ss_pred cCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccc
Confidence 9999999999999986531100 00 00
Q ss_pred ---------C------------------CcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCc
Q 008920 330 ---------A------------------PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (548)
Q Consensus 330 ---------~------------------~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~sr 382 (548)
. .......+|||+||||++|+++|.++|++| |.|.++.|+.++.|+++.
T Consensus 259 Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF----G~v~ya~iV~~k~T~~sk 334 (678)
T KOG0127|consen 259 EEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF----GEVKYAIIVKDKDTGHSK 334 (678)
T ss_pred cccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh----ccceeEEEEeccCCCCcc
Confidence 0 000113799999999999999999999999 999999999999999999
Q ss_pred eEEEEEECCHHHHHHHHHHc------C-CccCCeEEEEEeeecC
Q 008920 383 GIAYVLFKTREAANLVIKRR------N-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 383 G~AFV~F~~~e~A~~Al~~l------n-~~l~Gr~I~V~~Ak~~ 419 (548)
|.|||.|.+..+|+.||.+. + ..|.||.|.|..|..+
T Consensus 335 GtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 335 GTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred cceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99999999999999999876 2 6789999999999875
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.5e-22 Score=223.04 Aligned_cols=160 Identities=22% Similarity=0.333 Sum_probs=134.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||.++++++|.++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|+.|| .
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~------------------sG~sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF------------------SGQNRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC------------------CCCccceEEEEeCCHHHHHHHHHH
Confidence 34899999999999999999999999999999996652 3568899999999999999999 5
Q ss_pred hcceeec-CceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEe-ecCCCCC
Q 008920 303 FNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVI-RHPHMRV 380 (548)
Q Consensus 303 lng~~~~-gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~-~d~~tg~ 380 (548)
||+..|. |+.|.|.++. ..++|||+|||..+++++|.++|..++ ..|+.+.|+ .....+.
T Consensus 119 lng~~i~~Gr~l~V~~S~---------------~~~rLFVgNLP~~~TeeeL~eeFskv~---egvv~vIv~~~~~~kgK 180 (578)
T TIGR01648 119 LNNYEIRPGRLLGVCISV---------------DNCRLFVGGIPKNKKREEILEEFSKVT---EGVVDVIVYHSAADKKK 180 (578)
T ss_pred cCCCeecCCccccccccc---------------cCceeEeecCCcchhhHHHHHHhhccc---CCceEEEEeccccccCc
Confidence 8988885 7888777653 257899999999999999999999984 234454443 3334677
Q ss_pred CceEEEEEECCHHHHHHHHHHcC---CccCCeEEEEEeeecC
Q 008920 381 GKGIAYVLFKTREAANLVIKRRN---LKLRDRELRLSHAQQN 419 (548)
Q Consensus 381 srG~AFV~F~~~e~A~~Al~~ln---~~l~Gr~I~V~~Ak~~ 419 (548)
++|||||+|.++++|..|+..+. ..|.|+.|.|.|+.+.
T Consensus 181 nRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 181 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred cCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 89999999999999999997664 5789999999999875
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=9e-22 Score=215.54 Aligned_cols=169 Identities=17% Similarity=0.238 Sum_probs=138.5
Q ss_pred CcccEEEEcCCCC-CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~-~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||+ .+|+++|.++|+.||.|..|.|+.+ .+|||||+|.+.++|..||
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----------------------~~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----------------------KKETALIEMADPYQAQLAL 330 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----------------------CCCEEEEEECCHHHHHHHH
Confidence 3568999999998 6999999999999999999998542 2489999999999999999
Q ss_pred -HhcceeecCceeEeecCCCcccccC-------------CC-C--------------CCcCCCccEEEEeCCCCCCCHHH
Q 008920 302 -AFNMAVIGGNHIRLDRACPPRKKLK-------------GE-D--------------APLYDIKKTVFVGNLPFDVKDEE 352 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~~k~~~-------------~~-~--------------~~~~~~~~tLfV~NLp~~~teed 352 (548)
.|||..|.|+.|.|.++........ .. . .....+..+|||+|||+.+++++
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~ 410 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED 410 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH
Confidence 5999999999999998754211000 00 0 01123567999999999999999
Q ss_pred HHHHHhccCCCCCC--eEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE------EEEEeeecC
Q 008920 353 IYQLFCGLNDLESS--VEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE------LRLSHAQQN 419 (548)
Q Consensus 353 L~~~F~~~g~~~G~--I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~------I~V~~Ak~~ 419 (548)
|+++|..| |. |..|.+.... ++ .+|||||+|.+.++|..||..|+ ..|.|+. |+|+|++++
T Consensus 411 L~~lF~~~----G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 411 LKELFAEN----GVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHhc----CCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999 76 8888876543 33 57999999999999999999888 8999885 999999764
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=8.9e-22 Score=216.34 Aligned_cols=174 Identities=19% Similarity=0.250 Sum_probs=141.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+.+|+++|.++|..||.|..|.|+.+. .+|.++|||||+|.+.++|..|| .
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----------------~~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI-----------------ATGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----------------CCCCcCeEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999999999986543 24568899999999999999999 5
Q ss_pred hcceeecCceeEeecCCCcccccCCCC-------------------CCcCCCccEEEEeCCCCCC----------CHHHH
Q 008920 303 FNMAVIGGNHIRLDRACPPRKKLKGED-------------------APLYDIKKTVFVGNLPFDV----------KDEEI 353 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~~-------------------~~~~~~~~tLfV~NLp~~~----------teedL 353 (548)
|||..|.|+.|.|.++........... .....++.+|+|.||.... ..++|
T Consensus 357 l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl 436 (509)
T TIGR01642 357 LNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDV 436 (509)
T ss_pred cCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHH
Confidence 999999999999999864321110000 0012256789999996421 23689
Q ss_pred HHHHhccCCCCCCeEEEEEeecC---CCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008920 354 YQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 354 ~~~F~~~g~~~G~I~~VrI~~d~---~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
+++|+.| |.|..|.|+++. .++.+.|+|||+|.+.++|..||..|| ..|.|+.|.|.|...
T Consensus 437 ~~~f~~~----G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 437 KTEFSKY----GPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHhc----CCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999999 999999998752 345678999999999999999999998 999999999999864
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=5.2e-22 Score=205.24 Aligned_cols=165 Identities=24% Similarity=0.391 Sum_probs=144.8
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...+-||||.||.++.|++|.-||+..|+|-.++||.+++ +|.++|||||.|.+.+.|+.|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~-----------------sG~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF-----------------SGDNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc-----------------CCCCcceEEEEeecHHHHHHHHH
Confidence 3457899999999999999999999999999999998875 4568899999999999999999
Q ss_pred Hhcceee-cCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecC-CCC
Q 008920 302 AFNMAVI-GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMR 379 (548)
Q Consensus 302 ~lng~~~-~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~-~tg 379 (548)
.||+..| .|+.|.|+.+. ..+.|||+|+|...++++|.+.|...+. -|++|.|...+ +..
T Consensus 144 ~lnn~Eir~GK~igvc~Sv---------------an~RLFiG~IPK~k~keeIlee~~kVte---GVvdVivy~~p~dk~ 205 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCVSV---------------ANCRLFIGNIPKTKKKEEILEEMKKVTE---GVVDVIVYPSPDDKT 205 (506)
T ss_pred HhhCccccCCCEeEEEEee---------------ecceeEeccCCccccHHHHHHHHHhhCC---CeeEEEEecCccccc
Confidence 5898887 68999999875 3588999999999999999999999853 47788777666 457
Q ss_pred CCceEEEEEECCHHHHHHHHHHc-C--CccCCeEEEEEeeecCCCC
Q 008920 380 VGKGIAYVLFKTREAANLVIKRR-N--LKLRDRELRLSHAQQNCTP 422 (548)
Q Consensus 380 ~srG~AFV~F~~~e~A~~Al~~l-n--~~l~Gr~I~V~~Ak~~~~~ 422 (548)
+++|||||+|.++..|..|-+.| + +.|+|+.|.|+||.+...+
T Consensus 206 KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 206 KNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred cccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 89999999999999999997554 4 9999999999999987444
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=7e-22 Score=192.08 Aligned_cols=167 Identities=19% Similarity=0.308 Sum_probs=150.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...+.|.|.-||.++|+++|+.+|...|+|++|.|++|.+ +|++-||+||.|.++++|++|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi-----------------tGqSLGYGFVNYv~p~DAe~Ain 101 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI-----------------TGQSLGYGFVNYVRPKDAEKAIN 101 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc-----------------cccccccceeeecChHHHHHHHh
Confidence 3457899999999999999999999999999999988774 4678999999999999999999
Q ss_pred HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCC
Q 008920 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~s 381 (548)
.|||..+....|.|.++.+.. .......|||.+||..+|..+|.++|++| |.|..-+|+.|..+|.+
T Consensus 102 tlNGLrLQ~KTIKVSyARPSs---------~~Ik~aNLYvSGlPktMtqkelE~iFs~f----GrIItSRiL~dqvtg~s 168 (360)
T KOG0145|consen 102 TLNGLRLQNKTIKVSYARPSS---------DSIKDANLYVSGLPKTMTQKELEQIFSPF----GRIITSRILVDQVTGLS 168 (360)
T ss_pred hhcceeeccceEEEEeccCCh---------hhhcccceEEecCCccchHHHHHHHHHHh----hhhhhhhhhhhccccee
Confidence 699999999999999997642 23345789999999999999999999999 89999999999999999
Q ss_pred ceEEEEEECCHHHHHHHHHHcC-CccCC--eEEEEEeeecC
Q 008920 382 KGIAYVLFKTREAANLVIKRRN-LKLRD--RELRLSHAQQN 419 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~V~~Ak~~ 419 (548)
+|.|||.|....+|+.||..+| ..--| -+|.|.||..+
T Consensus 169 rGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 169 RGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 9999999999999999999998 55545 68999999765
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=1.2e-20 Score=208.02 Aligned_cols=167 Identities=24% Similarity=0.336 Sum_probs=133.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCC-eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~-I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
.++|||+|||.++++++|.++|+.|+. |..+.+...+ . ..+.++|||||+|.++++|..|+ .
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~-~---------------~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSA-A---------------DKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccc-c---------------ccCccCceEEEEcCCHHHHHHHHHH
Confidence 579999999999999999999999864 4444432111 1 12347899999999999999999 4
Q ss_pred hc--ceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCC
Q 008920 303 FN--MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (548)
Q Consensus 303 ln--g~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~ 380 (548)
|+ ...+.|+.|.|.|+.+..... ........+|||+||++.+++++|+++|+.|.. |.|+.|.+++
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~--G~I~rV~~~r------ 269 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKP--GKVERVKKIR------ 269 (578)
T ss_pred hhccceEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCC--CceEEEEeec------
Confidence 53 356889999999987543211 112334578999999999999999999999832 6899998764
Q ss_pred CceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCCC
Q 008920 381 GKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNCT 421 (548)
Q Consensus 381 srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~~ 421 (548)
+||||+|.+.++|.+||..|| ..|.|+.|.|.|+.+...
T Consensus 270 --gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 270 --DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred --CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 499999999999999999888 999999999999988643
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=4.4e-21 Score=186.51 Aligned_cols=172 Identities=26% Similarity=0.342 Sum_probs=146.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (548)
..|||.+||..+|..+|..+|++||.|..-+|+.+.. +|.++|.+||.|....+|+.|| .||
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv-----------------tg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV-----------------TGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc-----------------cceecceeEEEecchhHHHHHHHhcc
Confidence 5799999999999999999999999998877754432 4678899999999999999999 599
Q ss_pred ceeecCc--eeEeecCCCcccccCCC-------------C----------------------------------------
Q 008920 305 MAVIGGN--HIRLDRACPPRKKLKGE-------------D---------------------------------------- 329 (548)
Q Consensus 305 g~~~~gr--~I~V~~a~~~~k~~~~~-------------~---------------------------------------- 329 (548)
|+.-.|. +|.|.++..+....... .
T Consensus 191 G~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~ 270 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVN 270 (360)
T ss_pred CCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeec
Confidence 9988774 89999987552210000 0
Q ss_pred -CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008920 330 -APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 330 -~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
........||||-||..+++|.-||++|.+| |.|..|.|++|..|..++|||||.+.+.++|..||..|| ..|+
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF----GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg 346 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPF----GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 346 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcc----cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc
Confidence 0111125799999999999999999999999 999999999999999999999999999999999999998 9999
Q ss_pred CeEEEEEeeec
Q 008920 408 DRELRLSHAQQ 418 (548)
Q Consensus 408 Gr~I~V~~Ak~ 418 (548)
++.|.|.|-..
T Consensus 347 ~rvLQVsFKtn 357 (360)
T KOG0145|consen 347 DRVLQVSFKTN 357 (360)
T ss_pred ceEEEEEEecC
Confidence 99999999654
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.2e-21 Score=197.60 Aligned_cols=174 Identities=18% Similarity=0.359 Sum_probs=150.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
-+.||||.|.+.+.++.|+..|..||+|.+|.|-+|+.+ ++++|||||+|+-++.|+.|+ .|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T-----------------~kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT-----------------GKHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccccc-----------------ccccceEEEEEeCcHHHHHHHHHh
Confidence 478999999999999999999999999999999888754 568899999999999999999 59
Q ss_pred cceeecCceeEeecCCCcccccCCCC--CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCC
Q 008920 304 NMAVIGGNHIRLDRACPPRKKLKGED--APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~--~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~s 381 (548)
||.+++||.|.|.+...-.......+ .......+.|||..+..+++++||+.+|..| |.|..|.+.+++.++.+
T Consensus 176 Ng~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGH 251 (544)
T ss_pred ccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh----cceeeEEeeccCCCCCc
Confidence 99999999999997643211000000 0111235789999999999999999999999 99999999999999999
Q ss_pred ceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 382 KGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
+|||||+|.+..+...||..|| +.|+|..|+|..+..+
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 9999999999999999999999 9999999999998754
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.84 E-value=1.4e-19 Score=196.53 Aligned_cols=169 Identities=17% Similarity=0.260 Sum_probs=137.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+.+|+++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|| .|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~-----------------~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE-----------------TGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHHHHhc
Confidence 68999999999999999999999999999999965442 3457899999999999999999 59
Q ss_pred cceeecCceeEeecCCCccccc--------------------------------CCC-----------------------
Q 008920 304 NMAVIGGNHIRLDRACPPRKKL--------------------------------KGE----------------------- 328 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~--------------------------------~~~----------------------- 328 (548)
||..|.|+.|.|.++....... ...
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999954210000 000
Q ss_pred -----C---------------------CCcCCCccEEEEeCCCCCCC----------HHHHHHHHhccCCCCCCeEEEEE
Q 008920 329 -----D---------------------APLYDIKKTVFVGNLPFDVK----------DEEIYQLFCGLNDLESSVEAVRV 372 (548)
Q Consensus 329 -----~---------------------~~~~~~~~tLfV~NLp~~~t----------eedL~~~F~~~g~~~G~I~~VrI 372 (548)
. ........+|+|.||....+ .+||++.|..| |.|+.|.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~----G~v~~v~v 404 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY----GGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc----CCeeEEEE
Confidence 0 00123567899999955443 36899999999 89999988
Q ss_pred eecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008920 373 IRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 373 ~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
... ...|++||.|.+.++|..|+..|+ ..|+|+.|.|.|...
T Consensus 405 ~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 405 DTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred eCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 643 357999999999999999999998 999999999999864
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=203.57 Aligned_cols=175 Identities=23% Similarity=0.351 Sum_probs=147.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (548)
+|||.||++++|.++|..+|..+|.|.+|.|...+. |. +--.+.|||||+|.++++|+.|+ .|+|
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd-----~~---------~k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD-----PA---------NKYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc-----cc---------ccccccceeEEEecCHHHHHHHHHHhcC
Confidence 399999999999999999999999999998844221 11 01237899999999999999999 5899
Q ss_pred eeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEE
Q 008920 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (548)
Q Consensus 306 ~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~A 385 (548)
+.|.|+.|.|.++........+...+.......|+|+|||+..+-.+|+.+|+.| |.|.+|+|+.-...+.++|||
T Consensus 583 tvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF----GqlksvRlPKK~~k~a~rGF~ 658 (725)
T KOG0110|consen 583 TVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF----GQLKSVRLPKKIGKGAHRGFG 658 (725)
T ss_pred ceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc----cceeeeccchhhcchhhccce
Confidence 9999999999998722222222122223346799999999999999999999999 999999999876677889999
Q ss_pred EEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 386 YVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 386 FV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
||.|-++.+|..|+..|+ ..|.||.|.+.||...
T Consensus 659 Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 659 FVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred eeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 999999999999999998 9999999999999875
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=4.4e-20 Score=191.07 Aligned_cols=168 Identities=24% Similarity=0.322 Sum_probs=139.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCC-eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~-I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
..++.|||||||.+.++++|.+.|++.++ |..|.|...+.. ..+++|||||+|.++..|..|-
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d----------------k~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD----------------KTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc----------------cccccceEEEEeecchhHHHHH
Confidence 35688999999999999999999999874 566666433311 2348899999999999999987
Q ss_pred -H-hc-ceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC
Q 008920 302 -A-FN-MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (548)
Q Consensus 302 -~-ln-g~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t 378 (548)
. ++ ...+.|..|.|+|+.+..... ......-..|||+||+.++|++.|..+|..| |.|+.|..++|
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rD--- 294 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRD--- 294 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccc---
Confidence 4 34 457899999999998653211 1122335689999999999999999999999 99999998877
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCCCC
Q 008920 379 RVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNCTP 422 (548)
Q Consensus 379 g~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~~~ 422 (548)
||||.|.+.++|.+||+.+| ..|.|..|.|.+|+|....
T Consensus 295 -----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 295 -----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred -----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 99999999999999999998 9999999999999987433
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=1.9e-20 Score=198.38 Aligned_cols=184 Identities=20% Similarity=0.317 Sum_probs=156.4
Q ss_pred CCCcCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHH
Q 008920 217 GFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (548)
Q Consensus 217 ~~~~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~ 296 (548)
....++++.+|||+--|+..++.-+|.+||+.+|.|..|+|+.+.+ ++.++|.|||+|.+.++
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~-----------------s~rskgi~Yvef~D~~s 233 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN-----------------SRRSKGIAYVEFCDEQS 233 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc-----------------chhhcceeEEEEecccc
Confidence 3445677889999999999999999999999999999999977653 34588999999999999
Q ss_pred HHHHHHhcceeecCceeEeecCCCcccccCCCC-----CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEE
Q 008920 297 TEAALAFNMAVIGGNHIRLDRACPPRKKLKGED-----APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR 371 (548)
Q Consensus 297 A~~Al~lng~~~~gr~I~V~~a~~~~k~~~~~~-----~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~Vr 371 (548)
+..||.|.|..+.|.+|.|.............. .....+-..|||+||.+.+++++|+.+|..| |.|+.|.
T Consensus 234 Vp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf----g~Ie~v~ 309 (549)
T KOG0147|consen 234 VPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF----GKIENVQ 309 (549)
T ss_pred hhhHhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCc----ccceeee
Confidence 999999999999999999998764332211111 0111122339999999999999999999999 9999999
Q ss_pred EeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCCC
Q 008920 372 VIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNCT 421 (548)
Q Consensus 372 I~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~~ 421 (548)
++.|..||.++|||||+|.+.++|..|+..|| +.|.|+.|+|........
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99998899999999999999999999998888 999999999999877633
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.9e-19 Score=187.65 Aligned_cols=150 Identities=23% Similarity=0.414 Sum_probs=136.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (548)
..|||| +++|+..|.++|+.+|+|.+|+++++. + +.|||||.|.++.+|..|| ++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-------------------slgy~yvnf~~~~da~~A~~~~n 58 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-------------------SLGYAYVNFQQPADAERALDTMN 58 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-------------------ccceEEEecCCHHHHHHHHHHcC
Confidence 368999 899999999999999999999997654 2 6699999999999999999 699
Q ss_pred ceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceE
Q 008920 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~ 384 (548)
...+.|++|+|.|+.... ..|||.||+.+++..+|.++|+.| |.|++|.|..+. .| ++||
T Consensus 59 ~~~~~~~~~rim~s~rd~--------------~~~~i~nl~~~~~~~~~~d~f~~~----g~ilS~kv~~~~-~g-~kg~ 118 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDP--------------SLVFIKNLDESIDNKSLYDTFSEF----GNILSCKVATDE-NG-SKGY 118 (369)
T ss_pred CcccCCcEEEeehhccCC--------------ceeeecCCCcccCcHHHHHHHHhh----cCeeEEEEEEcC-CC-ceee
Confidence 999999999999986421 229999999999999999999999 999999999995 45 9999
Q ss_pred EEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 385 AYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 385 AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
||+|.+.++|..||.++| ..+.|..|.|......
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999999988 8999999999988764
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.81 E-value=1e-19 Score=179.66 Aligned_cols=145 Identities=17% Similarity=0.342 Sum_probs=134.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-lng 305 (548)
.|||||||..+++.+|+.+|++||.|..|.|+ +.||||..++...+.-||. |||
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 59999999999999999999999999999993 2599999999999999995 999
Q ss_pred eeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEE
Q 008920 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (548)
Q Consensus 306 ~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~A 385 (548)
..|.|..|.|+.+... ...+.+|+|+||.+.++..+|+..|++| |.|..|.|++| |+
T Consensus 59 YtLhg~nInVeaSksK-----------sk~stkl~vgNis~tctn~ElRa~fe~y----gpviecdivkd--------y~ 115 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSK-----------SKASTKLHVGNISPTCTNQELRAKFEKY----GPVIECDIVKD--------YA 115 (346)
T ss_pred ceecceEEEEEecccc-----------CCCccccccCCCCccccCHHHhhhhccc----CCceeeeeecc--------ee
Confidence 9999999999998643 3356889999999999999999999999 99999999977 99
Q ss_pred EEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 386 YVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 386 FV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
||.|.-.++|..|+..|+ ..|.|.+|+|..+..+
T Consensus 116 fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred EEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 999999999999998887 9999999999998876
No 29
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=1.4e-18 Score=178.11 Aligned_cols=173 Identities=18% Similarity=0.334 Sum_probs=153.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
+.+.|||++|++.++++.|+.+|.+||+|..|.++.++.+ ++++||+||+|.+++.+..+|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t-----------------~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST-----------------GRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC-----------------CCcccccceecCCCcchheeecc
Confidence 4689999999999999999999999999999999877643 45889999999999999999987
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008920 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
..+.|.|+.|.+..+.+....... ........|||++||.++++++|+++|.+| |.|..+.++.|..+...+|
T Consensus 68 ~~h~~dgr~ve~k~av~r~~~~~~---~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~----g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 68 RTHKLDGRSVEPKRAVSREDQTKV---GRHLRTKKIFVGGLPPDTTEEDFKDYFEQF----GKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred cccccCCccccceeccCccccccc---ccccceeEEEecCcCCCCchHHHhhhhhcc----ceeEeeEEeeccccccccc
Confidence 788899999999999875433222 112257799999999999999999999999 8999999999999999999
Q ss_pred EEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeecCC
Q 008920 384 IAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNC 420 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~~~ 420 (548)
|+||.|.+.+.+..++....+.|+|+.+.|..|.|+.
T Consensus 141 Fgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 141 FGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ceeeEeccccccceecccceeeecCceeeEeeccchh
Confidence 9999999999999999888899999999999999873
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.6e-17 Score=175.34 Aligned_cols=167 Identities=26% Similarity=0.402 Sum_probs=145.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (548)
.|||.||+.+++..+|..+|+.||.|.+|++.++. .| ++|| ||+|.++++|.+|+ .+||
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~------------------~g-~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE------------------NG-SKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC------------------CC-ceee-EEEeCCHHHHHHHHHHhcC
Confidence 39999999999999999999999999999997654 22 7799 99999999999999 5899
Q ss_pred eeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEE
Q 008920 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (548)
Q Consensus 306 ~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~A 385 (548)
..+.|..|.|............... ....-..+||.|++.+++++.|..+|..| |.|.++.|+.+. .|.++|||
T Consensus 138 ~ll~~kki~vg~~~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~----g~i~s~~v~~~~-~g~~~~~g 211 (369)
T KOG0123|consen 138 MLLNGKKIYVGLFERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAY----GSITSVAVMRDS-IGKSKGFG 211 (369)
T ss_pred cccCCCeeEEeeccchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhccc----CcceEEEEeecC-CCCCCCcc
Confidence 9999999999998765433322222 33445789999999999999999999999 999999999994 67799999
Q ss_pred EEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 386 YVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 386 FV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
||.|.++++|..|+..++ ..+.|..+.|..+...
T Consensus 212 fv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 212 FVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred ceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 999999999999999999 7778899999988763
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.4e-17 Score=163.30 Aligned_cols=137 Identities=26% Similarity=0.422 Sum_probs=117.3
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..+||||+||..++||+-|..||.++|.|..+.|+.+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------------------- 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------------------- 41 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------------
Confidence 3589999999999999999999999999998887321
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008920 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
.|.|.++..+..+. .+.....-.|||+.|...++-++|++.|.+| |.|.+++|++|..|++++|
T Consensus 42 --------e~~v~wa~~p~nQs----k~t~~~hfhvfvgdls~eI~~e~lr~aF~pF----GevS~akvirD~~T~KsKG 105 (321)
T KOG0148|consen 42 --------ELKVNWATAPGNQS----KPTSNQHFHVFVGDLSPEIDNEKLREAFAPF----GEVSDAKVIRDMNTGKSKG 105 (321)
T ss_pred --------hhccccccCcccCC----CCccccceeEEehhcchhcchHHHHHHhccc----cccccceEeecccCCcccc
Confidence 45666665542211 2222235679999999999999999999999 9999999999999999999
Q ss_pred EEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 384 IAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
||||.|...++|+.||..|| ..|++|.|+-.||.-+
T Consensus 106 YgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 106 YGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 99999999999999999998 9999999999999754
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=8.2e-17 Score=166.29 Aligned_cols=84 Identities=17% Similarity=0.346 Sum_probs=78.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
...|||.+||.+.-+.+|-..|..| |.|.+..|..|..|+.++.|+||.|++..+|..||..|| ..|++.+|.|.
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pf----G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPF----GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccc----cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 4579999999999999999999999 899999999999999999999999999999999999998 99999999999
Q ss_pred eeecCCCCC
Q 008920 415 HAQQNCTPS 423 (548)
Q Consensus 415 ~Ak~~~~~~ 423 (548)
....+..+.
T Consensus 500 lk~~~~np~ 508 (510)
T KOG0144|consen 500 LKRDRNNPY 508 (510)
T ss_pred eeeccCCCC
Confidence 988765543
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=7.9e-16 Score=143.65 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=125.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||.++-+.+|..+|.+||.|..|.|-..+ + .-.||||+|+++.+|+.||
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~----g----------------~ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP----G----------------PPPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC----C----------------CCCeeEEEecCccchhhhhh
Confidence 346899999999999999999999999999999882211 1 2369999999999999999
Q ss_pred HhcceeecCceeEeecCCCcccccCC-----------------CCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 008920 302 AFNMAVIGGNHIRLDRACPPRKKLKG-----------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k~~~~-----------------~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~ 364 (548)
..+|..+.|..|+|+++..-...... ...+.......|.|.+||...+|+||++++..-
T Consensus 64 gRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea---- 139 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA---- 139 (241)
T ss_pred cccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh----
Confidence 58999999999999998643211000 002333445789999999999999999999998
Q ss_pred CCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008920 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 365 G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
|.|....|.+| |++.|.|...++..-||..|. ..+
T Consensus 140 GdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 140 GDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred CCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 89999999888 489999999999999998776 443
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.6e-16 Score=155.44 Aligned_cols=175 Identities=19% Similarity=0.315 Sum_probs=145.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
+.+.||||-|...-.|+|++.+|..||.|.+|.+.+.+ +|.++|||||.|.+..+|+.|| .
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~------------------dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP------------------DGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC------------------CCCCCCceEEEeccchHHHHHHHH
Confidence 34789999999999999999999999999999996644 5668999999999999999999 6
Q ss_pred hccee-ecC--ceeEeecCCCcccc-------------------------------------------------------
Q 008920 303 FNMAV-IGG--NHIRLDRACPPRKK------------------------------------------------------- 324 (548)
Q Consensus 303 lng~~-~~g--r~I~V~~a~~~~k~------------------------------------------------------- 324 (548)
|||.. +.| ..|.|.++.....+
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 88764 444 36777776421000
Q ss_pred -------------------------------------------------------cCCCC--------------------
Q 008920 325 -------------------------------------------------------LKGED-------------------- 329 (548)
Q Consensus 325 -------------------------------------------------------~~~~~-------------------- 329 (548)
..+..
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence 00000
Q ss_pred ---------------------------------------CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEE
Q 008920 330 ---------------------------------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV 370 (548)
Q Consensus 330 ---------------------------------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~V 370 (548)
....+..+.|||-.||....+.+|.++|-.| |.|++.
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF----GhivSa 315 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF----GHIVSA 315 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc----cceeee
Confidence 0012346899999999999999999999999 999999
Q ss_pred EEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008920 371 RVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 371 rI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
.|..|+.|+.+++||||.|.++.+|+.||..|| +.|+-++|.|..-+|+.
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999999999999998 99999999999877653
No 35
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.66 E-value=2e-15 Score=158.67 Aligned_cols=167 Identities=22% Similarity=0.342 Sum_probs=134.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
..-|-+.+|||.||+++|.+||+.|+ |+++.+.+ .+|+.+|-|||+|.+.+++++||+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-------------------~~Gr~sGeA~Ve~~seedv~~Alkkd 69 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-------------------RNGRPSGEAYVEFTSEEDVEKALKKD 69 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-------------------cCCCcCcceEEEeechHHHHHHHHhh
Confidence 35689999999999999999999998 77776632 13567899999999999999999999
Q ss_pred ceeecCceeEeecCCCcccc--cCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE--EEEeecCCCCC
Q 008920 305 MAVIGGNHIRLDRACPPRKK--LKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--VRVIRHPHMRV 380 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~~k~--~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~--VrI~~d~~tg~ 380 (548)
...+..+.|.|-.+...... ..........+...|-+++|||.||++||.+||+.. .|.. |.++.+ ..++
T Consensus 70 R~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL-----~Iv~~gi~l~~d-~rgR 143 (510)
T KOG4211|consen 70 RESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL-----EIVPDGILLPMD-QRGR 143 (510)
T ss_pred HHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCC-----cccccceeeecc-CCCC
Confidence 99999999999887543211 111111111355789999999999999999999987 3333 445666 4678
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEeee
Q 008920 381 GKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQ 417 (548)
Q Consensus 381 srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak 417 (548)
+.|-|||+|.+.+.|+.||......|+.|-|.|..+.
T Consensus 144 ~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 144 PTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred cccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 9999999999999999999988889999999998775
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=3.1e-15 Score=138.52 Aligned_cols=85 Identities=21% Similarity=0.388 Sum_probs=79.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.|..++.++|||||+|.+.++|+.||..++ ..|.|+.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4456899999999999999999999999 999999999999999999999999999999999998887 99999999
Q ss_pred EEEeeecCCC
Q 008920 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.|+.++..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999987543
No 37
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.7e-15 Score=150.61 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=113.2
Q ss_pred ccccccccCccCCCCCCCCchhhHhhhccCCCCCchhhhhhhhcCC--ccccccccchhhhhhhhhhhhhhHHHHHHhhc
Q 008920 105 KSTKLIYPRSILGFEPNGTIENEIKKEHSSNVGSESYLNRQKQNSN--FSVEGKKRSENKKTKKRKRDDVEKDYVEKKYG 182 (548)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~k~~~~--~~~~~e~~~~~kKkkKrK~~e~eee~e~~~~~ 182 (548)
+--.||.|+|||+|.||.|++..++++. -.+++..|+.--....+ .....+. ..++....+ .+..+..... ..
T Consensus 8 nllaLF~pRpPl~y~pP~d~~p~kr~~~-~~tGvA~~~~~~~~~~d~p~~~p~~t-~~e~~er~~--~~k~e~~~~~-~~ 82 (335)
T KOG0113|consen 8 NLLALFAPRPPLPYLPPTDKLPHKRKTN-PYTGVAQYLSTFEDPKDAPPKFPVET-PEEPLERGR--REKTEKIPHK-LE 82 (335)
T ss_pred cHHHhcCCCCCcccCCccccChhhccCC-CcccHHHHHHhhcCcccCCCcCcccc-hhhHHHhhh--hhhhhhhHHH-HH
Confidence 4457999999999999999999999888 58887666655333322 1122222 111111111 1111110000 00
Q ss_pred chhhhhcccccccccccccccchhhhhhhccccCCCCcCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecc
Q 008920 183 VIAKEEEGKKVGVGEKRKKADNETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPI 262 (548)
Q Consensus 183 ~~~~e~e~e~~~~~kKrK~~~~~e~~~~~~~~~e~~~~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~ 262 (548)
.-..- -++..+ ...-....+||||+-|+++++|..|...|+.||+|..|+|+.+.+
T Consensus 83 ~~l~~---------------wdP~~d---------p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v 138 (335)
T KOG0113|consen 83 RRLKL---------------WDPNND---------PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV 138 (335)
T ss_pred HHHHh---------------cCCCCC---------CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc
Confidence 00000 111111 111123468999999999999999999999999999999977653
Q ss_pred cCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-HhcceeecCceeEeecCC
Q 008920 263 IDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 263 ~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V~~a~ 319 (548)
+|.++|||||+|.++.++..|. ..+|..|+|+.|.|+.-.
T Consensus 139 -----------------TgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 139 -----------------TGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred -----------------cCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 4568899999999999999999 589999999999999853
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=1.3e-14 Score=160.88 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=71.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+++++++|.++|+.||.|.+|+|..++. ++.++|||||+|.+.++|..|| .
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~-----------------tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC-----------------CCCcCCeEEEEECCHHHHHHHHHH
Confidence 457999999999999999999999999999999966542 3457899999999999999999 6
Q ss_pred hcceeecCceeEeecCCC
Q 008920 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
||+..|+|+.|+|.++..
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999999999999988653
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.63 E-value=5.7e-15 Score=142.53 Aligned_cols=165 Identities=24% Similarity=0.371 Sum_probs=134.3
Q ss_pred cccEEEEcCCCCCCcHHHHHH----HhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008920 224 LLRTIFVGNLPLKVKKKTLIK----EFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~----~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
.+.||||.||+..+..++|+. +|++||.|..|.... +...+|-|||+|.+.+.|-.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--------------------t~KmRGQA~VvFk~~~~As~ 67 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--------------------TPKMRGQAFVVFKETEAASA 67 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--------------------CCCccCceEEEecChhHHHH
Confidence 345999999999999999888 999999999988732 23478999999999999999
Q ss_pred HH-HhcceeecCceeEeecCCCcccccCC--------------------------CC---------------CCcCCCcc
Q 008920 300 AL-AFNMAVIGGNHIRLDRACPPRKKLKG--------------------------ED---------------APLYDIKK 337 (548)
Q Consensus 300 Al-~lng~~~~gr~I~V~~a~~~~k~~~~--------------------------~~---------------~~~~~~~~ 337 (548)
|+ .|+|..|.|..|+|+++......... .. .....+..
T Consensus 68 A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ 147 (221)
T KOG4206|consen 68 ALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNN 147 (221)
T ss_pred HHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCce
Confidence 99 69999999999999998753111000 00 12245678
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC-CeEEEEEe
Q 008920 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR-DRELRLSH 415 (548)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~-Gr~I~V~~ 415 (548)
.||+.|||..++.+.|..+|++| .....|+++... .++|||+|.+...|..|...++ ..+. ...|.|.+
T Consensus 148 ilf~~niP~es~~e~l~~lf~qf----~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 148 ILFLTNIPSESESEMLSDLFEQF----PGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred EEEEecCCcchhHHHHHHHHhhC----cccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 99999999999999999999999 567778877653 5799999999999999988776 5554 88899988
Q ss_pred ee
Q 008920 416 AQ 417 (548)
Q Consensus 416 Ak 417 (548)
+.
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 75
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=3.7e-14 Score=137.98 Aligned_cols=152 Identities=18% Similarity=0.374 Sum_probs=126.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (548)
.||||+||+.+.+.+|..||..||.|..|.| ..||+||+|.+..+|..|+ .+|+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-------------------------k~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM-------------------------KNGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee-------------------------ecccceeccCchhhhhcccchhcC
Confidence 5999999999999999999999999999988 3489999999999999999 7999
Q ss_pred eeecCceeEeecCCCccccc----CC-------CCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEee
Q 008920 306 AVIGGNHIRLDRACPPRKKL----KG-------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (548)
Q Consensus 306 ~~~~gr~I~V~~a~~~~k~~----~~-------~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~ 374 (548)
..|.|..+.|.++....... .+ .-.......+.|+|.||+..+.+.+|.++|+.+ |.+..+.+
T Consensus 58 ~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~----g~~~~~~~-- 131 (216)
T KOG0106|consen 58 KELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA----GEVTYVDA-- 131 (216)
T ss_pred ceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc----CCCchhhh--
Confidence 99999889898887421111 00 001223346788999999999999999999999 78755443
Q ss_pred cCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 375 HPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 375 d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
..+++||+|.+.++|..||..++ ..|.|+.|.|.+
T Consensus 132 ------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 ------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 35699999999999999999998 999999999943
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=7.8e-14 Score=152.05 Aligned_cols=173 Identities=22% Similarity=0.328 Sum_probs=135.8
Q ss_pred CCcCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHH
Q 008920 218 FDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (548)
Q Consensus 218 ~~~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A 297 (548)
+...++..+.|+|+|||..+..++|..+|..||.|..|.|+ + .-.-|+|+|.++.+|
T Consensus 378 F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~---------------------~G~~aiv~fl~p~eA 434 (725)
T KOG0110|consen 378 FSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P---------------------GGTGAIVEFLNPLEA 434 (725)
T ss_pred chhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c---------------------ccceeeeeecCccch
Confidence 33356667899999999999999999999999999998551 1 112499999999999
Q ss_pred HHHH-HhcceeecCceeEeecCCCcccc------------------------cCCCC------C-----------CcCCC
Q 008920 298 EAAL-AFNMAVIGGNHIRLDRACPPRKK------------------------LKGED------A-----------PLYDI 335 (548)
Q Consensus 298 ~~Al-~lng~~~~gr~I~V~~a~~~~k~------------------------~~~~~------~-----------~~~~~ 335 (548)
+.|+ .|..+.+...+|.+.|+...... ...+. . .....
T Consensus 435 r~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~ 514 (725)
T KOG0110|consen 435 RKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEET 514 (725)
T ss_pred HHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhcccc
Confidence 9999 58888888888877775321000 00000 0 00111
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC---CCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t---g~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
.+.|||.||+|+++.++|..+|..+ |.|.+|.|...++. -.+.|||||+|.+.++|+.|++.|+ ..|.|+.|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l 590 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKL 590 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceE
Confidence 2349999999999999999999998 89999988876532 2456999999999999999999998 99999999
Q ss_pred EEEeee
Q 008920 412 RLSHAQ 417 (548)
Q Consensus 412 ~V~~Ak 417 (548)
.|.++.
T Consensus 591 ~lk~S~ 596 (725)
T KOG0110|consen 591 ELKISE 596 (725)
T ss_pred EEEecc
Confidence 999998
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.50 E-value=9.2e-14 Score=148.01 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=129.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (548)
.||||||-+++++++|..+|+.||.|+.|.++.+. .+|.++||+||+|.+.++|.+|+ .|||
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~-----------------~tG~skgfGfi~f~~~~~ar~a~e~lng 342 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS-----------------ETGRSKGFGFITFVNKEDARKALEQLNG 342 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccc-----------------ccccccCcceEEEecHHHHHHHHHHhcc
Confidence 39999999999999999999999999999985432 25678999999999999999998 6999
Q ss_pred eeecCceeEeecCCCcccccC--------------------CC-------------------------------------
Q 008920 306 AVIGGNHIRLDRACPPRKKLK--------------------GE------------------------------------- 328 (548)
Q Consensus 306 ~~~~gr~I~V~~a~~~~k~~~--------------------~~------------------------------------- 328 (548)
..|.|+.|.|......-.... ..
T Consensus 343 felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~ 422 (549)
T KOG0147|consen 343 FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFN 422 (549)
T ss_pred ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhc
Confidence 999999999987542200000 00
Q ss_pred ------C-CC------cCCCccEEEEeCCCC--CCC--------HHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEE
Q 008920 329 ------D-AP------LYDIKKTVFVGNLPF--DVK--------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (548)
Q Consensus 329 ------~-~~------~~~~~~tLfV~NLp~--~~t--------eedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~A 385 (548)
. .+ ...++.|+.+.||-. ..| .+||.+.+..| |.|..|.|..+ +-|+.
T Consensus 423 ~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~----g~v~hi~vd~n-----s~g~V 493 (549)
T KOG0147|consen 423 GVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH----GKVCHIFVDKN-----SAGCV 493 (549)
T ss_pred CCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc----CCeeEEEEccC-----CCceE
Confidence 0 00 013356777777722 222 36777888888 89988877544 34899
Q ss_pred EEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008920 386 YVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 386 FV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
||.|.+.++|..|+..|| .+|.|+.|.+.|-..
T Consensus 494 Yvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 494 YVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred EEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 999999999999999998 999999999999754
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.50 E-value=1.3e-13 Score=127.71 Aligned_cols=81 Identities=20% Similarity=0.393 Sum_probs=72.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+++++++|+++|.+||.|.+|.|+.+.. ++.++|||||+|.+.++|+.|| .
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE-----------------TGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999999999999966542 3457899999999999999999 5
Q ss_pred hcceeecCceeEeecCCCc
Q 008920 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++...
T Consensus 96 lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 96 MDGKELNGRHIRVNPANDR 114 (144)
T ss_pred cCCCEECCEEEEEEeCCcC
Confidence 9999999999999998654
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.48 E-value=9.1e-13 Score=133.57 Aligned_cols=184 Identities=23% Similarity=0.285 Sum_probs=136.9
Q ss_pred CCCcCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHH
Q 008920 217 GFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (548)
Q Consensus 217 ~~~~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~ 296 (548)
.+.-+...++.|||.|||.++|.+++.++|+.||.|. +++ +++.|+ +.+..-+.|+.+|-|.|.|...++
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~-----~d~--~t~epk---~KlYrd~~G~lKGDaLc~y~K~ES 195 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIM-----RDP--QTGEPK---VKLYRDNQGKLKGDALCCYIKRES 195 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEe-----ccC--CCCCee---EEEEecCCCCccCceEEEeecccH
Confidence 4444556677899999999999999999999999662 222 334444 112223568899999999999999
Q ss_pred HHHHHH-hcceeecCceeEeecCCCcccc-------cC----------------------CCCCCcCCCccEEEEeCCCC
Q 008920 297 TEAALA-FNMAVIGGNHIRLDRACPPRKK-------LK----------------------GEDAPLYDIKKTVFVGNLPF 346 (548)
Q Consensus 297 A~~Al~-lng~~~~gr~I~V~~a~~~~k~-------~~----------------------~~~~~~~~~~~tLfV~NLp~ 346 (548)
+..|+. |++..|.|+.|+|..|.-..+. .. ..........++|.|.||-.
T Consensus 196 VeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ft 275 (382)
T KOG1548|consen 196 VELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFT 275 (382)
T ss_pred HHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCC
Confidence 999995 8999999999999998632110 00 00012223457899999832
Q ss_pred ----CCC-------HHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 347 ----DVK-------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 347 ----~~t-------eedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
..+ .++|.+-+..| |.|..|.|.- ..+.|.+-|.|.+.++|..||+.|+ ..|.||.|...
T Consensus 276 p~~~~~~~~l~~dlkedl~eec~K~----G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~ 347 (382)
T KOG1548|consen 276 PEDFEKNPDLLNDLKEDLTEECEKF----GQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTAS 347 (382)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHh----CCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEE
Confidence 223 46677778888 8999986652 2467899999999999999999998 99999999988
Q ss_pred eeec
Q 008920 415 HAQQ 418 (548)
Q Consensus 415 ~Ak~ 418 (548)
....
T Consensus 348 i~DG 351 (382)
T KOG1548|consen 348 IWDG 351 (382)
T ss_pred EeCC
Confidence 7654
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=8.3e-13 Score=136.84 Aligned_cols=170 Identities=20% Similarity=0.287 Sum_probs=138.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs-~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
..+.|||.||||++.+++|+.||. ..|+|+.|.|..|. .|+.+|||.|+|.+++.+++|++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~------------------~GK~rGcavVEFk~~E~~qKa~E 104 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE------------------SGKARGCAVVEFKDPENVQKALE 104 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc------------------CCCcCCceEEEeeCHHHHHHHHH
Confidence 356799999999999999999998 58999999996544 46688999999999999999995
Q ss_pred -hcceeecCceeEeecCCCcccc-----------------------------------------cCCCC-----------
Q 008920 303 -FNMAVIGGNHIRLDRACPPRKK-----------------------------------------LKGED----------- 329 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~~k~-----------------------------------------~~~~~----------- 329 (548)
||.+.+.||.|.|......... ....+
T Consensus 105 ~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~ 184 (608)
T KOG4212|consen 105 KLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTM 184 (608)
T ss_pred HhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcccc
Confidence 9999999999999775431000 00000
Q ss_pred --------------------CC----cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEE
Q 008920 330 --------------------AP----LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (548)
Q Consensus 330 --------------------~~----~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~A 385 (548)
.+ ..+-...+||.||.+.+....|.+.|.-. |.|+.|.+-.|+ .|.++|||
T Consensus 185 ~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA----Gkv~~vdf~idK-eG~s~G~~ 259 (608)
T KOG4212|consen 185 SNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA----GKVQSVDFSIDK-EGNSRGFA 259 (608)
T ss_pred ccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccc----eeeeeeceeecc-ccccCCee
Confidence 00 01124689999999999999999999987 899999999996 47999999
Q ss_pred EEEECCHHHHHHHHHHcC-CccCCeEEEEEee
Q 008920 386 YVLFKTREAANLVIKRRN-LKLRDRELRLSHA 416 (548)
Q Consensus 386 FV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~A 416 (548)
.++|..+-.|..||.+++ .-+..+++.|...
T Consensus 260 vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 260 VIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred EEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 999999999999999998 6667777777664
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=5.4e-13 Score=130.86 Aligned_cols=153 Identities=27% Similarity=0.408 Sum_probs=114.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+.+|+++|..+|..||.|..|.|..+. .++.++|||||+|.+.++|..|+ .+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~-----------------~~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR-----------------ETGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc-----------------ccCccCceEEEEecCHHHHHHHHHHc
Confidence 5899999999999999999999999999999986543 13568899999999999999999 58
Q ss_pred cceeecCceeEeecCCC----ccccc-----------CCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeE
Q 008920 304 NMAVIGGNHIRLDRACP----PRKKL-----------KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE 368 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~----~~k~~-----------~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~ 368 (548)
++..|.|+.|.|.+... ..... .............+++.+++..++..++..+|..+ |.+.
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 253 (306)
T COG0724 178 NGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR----GDIV 253 (306)
T ss_pred CCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc----ccce
Confidence 99999999999999642 11111 00012234456789999999999999999999999 7886
Q ss_pred EEEEeecCCCCCCceEEEEEECCHHHHHHH
Q 008920 369 AVRVIRHPHMRVGKGIAYVLFKTREAANLV 398 (548)
Q Consensus 369 ~VrI~~d~~tg~srG~AFV~F~~~e~A~~A 398 (548)
.+.+...........+.++.+.....+..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 254 RASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred eeeccCCCCCcccccccccchhHHHhhhhh
Confidence 666665543333443444444434433333
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=7.5e-13 Score=105.42 Aligned_cols=69 Identities=35% Similarity=0.591 Sum_probs=62.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hcce
Q 008920 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (548)
Q Consensus 228 VfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-lng~ 306 (548)
|||+|||.++|+++|.++|+.||.|..+.+.... .+..+|||||+|.+.++|..|++ ++|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~------------------~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS------------------SGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET------------------TSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc------------------cccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999996541 23477999999999999999995 9999
Q ss_pred eecCceeE
Q 008920 307 VIGGNHIR 314 (548)
Q Consensus 307 ~~~gr~I~ 314 (548)
.|.|+.|+
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 99999885
No 48
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.42 E-value=2e-12 Score=124.18 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=114.9
Q ss_pred cCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008920 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 220 ~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
++...-+||||.+||.++..-+|..+|..|.-.+.+.|.... .+ +...+-+|||+|.+.+.|..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Ts---k~-------------~~~~~pvaFatF~s~q~A~a 92 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTS---KG-------------DQVCKPVAFATFTSHQFALA 92 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeecc---CC-------------CccccceEEEEecchHHHHH
Confidence 334456999999999999999999999999878877774322 11 11245799999999999999
Q ss_pred HH-Hhcceeec---CceeEeecCCCcccccCCCC----------------------------------------------
Q 008920 300 AL-AFNMAVIG---GNHIRLDRACPPRKKLKGED---------------------------------------------- 329 (548)
Q Consensus 300 Al-~lng~~~~---gr~I~V~~a~~~~k~~~~~~---------------------------------------------- 329 (548)
|+ .|||..|+ +..|+|+++....+......
T Consensus 93 amnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al 172 (284)
T KOG1457|consen 93 AMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADAL 172 (284)
T ss_pred HHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccC
Confidence 99 79999996 46788888754311100000
Q ss_pred -------------------------------CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC
Q 008920 330 -------------------------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (548)
Q Consensus 330 -------------------------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t 378 (548)
........+|||-||...++|++|+.+|+.|. | ..-++|. .
T Consensus 173 ~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~---g-f~~l~~~-~--- 244 (284)
T KOG1457|consen 173 KENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYP---G-FHILKIR-A--- 244 (284)
T ss_pred CCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCC---C-ceEEEEe-c---
Confidence 00001134899999999999999999999994 3 2222322 1
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcC
Q 008920 379 RVGKGIAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 379 g~srG~AFV~F~~~e~A~~Al~~ln 403 (548)
..+...|||.|++.+.|..||..|.
T Consensus 245 ~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 245 RGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred CCCcceEeecHHHHHHHHHHHHHhh
Confidence 2235589999999999999987664
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=1.8e-12 Score=103.18 Aligned_cols=69 Identities=35% Similarity=0.658 Sum_probs=65.3
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008920 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 339 LfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
|||+|||.++++++|+++|..| |.|..+.|..+ .++..+|||||+|.+.++|..|+..++ ..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999 89999999998 688999999999999999999999777 999999985
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=1.5e-12 Score=137.01 Aligned_cols=83 Identities=27% Similarity=0.474 Sum_probs=78.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+++++++|+++|..| |.|+.|+|+.|..++.++|||||+|.+.++|..||..|+ ..|.+++|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~----G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i 179 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTI----GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL 179 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee
Confidence 3457899999999999999999999999 899999999999999999999999999999999998888 99999999
Q ss_pred EEEeeecC
Q 008920 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.+.
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99999764
No 51
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=7.9e-13 Score=117.12 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=70.4
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
+.++|||||||++-++|++|.+||+.||+|..|.|-.+.+ +...+|||||+|.+.++|..||.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------------kktpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------------KKTPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------------CcCccceEEEEEecchhHHHHHH
Confidence 3468999999999999999999999999999998844332 23478999999999999999996
Q ss_pred -hcceeecCceeEeecCC
Q 008920 303 -FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~ 319 (548)
++++.|..+.|+|+|..
T Consensus 97 yisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 97 YISGTRLDDRPIRIDWDA 114 (153)
T ss_pred HhccCcccccceeeeccc
Confidence 89999999999999964
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.2e-12 Score=128.67 Aligned_cols=76 Identities=30% Similarity=0.395 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
.++|||+|||+.+|+++|++||+.||.|.+|.|+.+. ..+|||||+|.++++|..||.||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--------------------~~~GfAFVtF~d~eaAe~AllLn 63 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--------------------ERSQIAYVTFKDPQGAETALLLS 63 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--------------------CCCCEEEEEeCcHHHHHHHHHhc
Confidence 4799999999999999999999999999999996532 14589999999999999999999
Q ss_pred ceeecCceeEeecCCC
Q 008920 305 MAVIGGNHIRLDRACP 320 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~ 320 (548)
|..|.|+.|.|.++..
T Consensus 64 G~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 64 GATIVDQSVTITPAED 79 (260)
T ss_pred CCeeCCceEEEEeccC
Confidence 9999999999999863
No 53
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=4.7e-12 Score=120.48 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=80.8
Q ss_pred CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC
Q 008920 330 APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD 408 (548)
Q Consensus 330 ~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G 408 (548)
.+..+....|.|-||-+.++.++|+.+|..| |.|-+|.|++|+.|+.++|||||.|.+..+|+.||++|+ .+|+|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg 82 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG 82 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc
Confidence 4556777899999999999999999999999 899999999999999999999999999999999999998 99999
Q ss_pred eEEEEEeeecC
Q 008920 409 RELRLSHAQQN 419 (548)
Q Consensus 409 r~I~V~~Ak~~ 419 (548)
+.|+|++|.-.
T Consensus 83 RelrVq~aryg 93 (256)
T KOG4207|consen 83 RELRVQMARYG 93 (256)
T ss_pred ceeeehhhhcC
Confidence 99999999754
No 54
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.4e-12 Score=124.30 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=78.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
.+..++|-|.||+.++++++|.++|..| |.|..|.|.+|..||.++|||||.|.+.++|.+||..|| .-+..-.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 4467899999999999999999999999 899999999999999999999999999999999999998 88999999
Q ss_pred EEEeeecC
Q 008920 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
+|.|++|.
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=2.4e-12 Score=124.84 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=77.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEe
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSH 415 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~ 415 (548)
-.+||||+|+|.+..+.|+.+|++| |+|+...|+.|+.+|+++|||||+|.+.++|.+||..-+..|+||+..|..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 4689999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred eecCCC
Q 008920 416 AQQNCT 421 (548)
Q Consensus 416 Ak~~~~ 421 (548)
|.-...
T Consensus 88 A~lg~~ 93 (247)
T KOG0149|consen 88 ASLGGK 93 (247)
T ss_pred hhhcCc
Confidence 875433
No 56
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2e-11 Score=129.77 Aligned_cols=181 Identities=23% Similarity=0.354 Sum_probs=124.4
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008920 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
...-++.||||+||++++|+.|...|..||.+ .|............|.+| +-||+|+.|+++.+++..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkG-----------s~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKG-----------SYGYVFLVFEDERSVQSL 322 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCC-----------cccEEEEEecchHHHHHH
Confidence 35567899999999999999999999999976 344422111122223222 336999999999998877
Q ss_pred H-Hhc----ceee-------cCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeE
Q 008920 301 L-AFN----MAVI-------GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE 368 (548)
Q Consensus 301 l-~ln----g~~~-------~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~ 368 (548)
| +.. ...| ....+.|..+......--.+.....++.+|||||+||.-++.++|..+|... +|.|.
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l---yGgV~ 399 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL---FGGVL 399 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh---cCceE
Confidence 6 321 1111 1122222222111100011124557889999999999999999999999843 39999
Q ss_pred EEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccC----CeEEEEEee
Q 008920 369 AVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLR----DRELRLSHA 416 (548)
Q Consensus 369 ~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~----Gr~I~V~~A 416 (548)
.|-|-.|++-+.++|-|-|+|.+..+..+||.+--..|. .+.|.|..-
T Consensus 400 yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 400 YVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred EEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 999999999999999999999999999999976543332 235555543
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=1e-11 Score=99.85 Aligned_cols=69 Identities=30% Similarity=0.577 Sum_probs=63.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008920 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 339 LfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
|||+|||+.+++++|.++|+.| |.|..|.+..+.. +.++|+|||+|.+.++|..|+..++ ..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999 8999999999976 9999999999999999999999998 999999884
No 58
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=3.8e-11 Score=119.91 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=82.5
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008920 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
..++.+||||+-|+++++|..|+..|..| |.|..|+||.|..||.++|||||+|.+.-+...|.+..+ ..|+|+.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 35788999999999999999999999999 999999999999999999999999999999999997766 9999999
Q ss_pred EEEEeeecCCCCCCCC
Q 008920 411 LRLSHAQQNCTPSKRK 426 (548)
Q Consensus 411 I~V~~Ak~~~~~~~rr 426 (548)
|.|.+-.....+.-..
T Consensus 173 i~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 173 ILVDVERGRTVKGWLP 188 (335)
T ss_pred EEEEeccccccccccc
Confidence 9999988765544443
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=2.1e-11 Score=98.02 Aligned_cols=69 Identities=28% Similarity=0.527 Sum_probs=58.6
Q ss_pred EEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hcce
Q 008920 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (548)
Q Consensus 228 VfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-lng~ 306 (548)
|||+|||+++++++|.++|+.||.|..|.+.... .+..+|+|||+|.+.++|..|+. +++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~------------------~~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK------------------DGQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST------------------TSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee------------------ccccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 7999999999999999999999999999985422 13467999999999999999996 5669
Q ss_pred eecCceeE
Q 008920 307 VIGGNHIR 314 (548)
Q Consensus 307 ~~~gr~I~ 314 (548)
.|.|++|+
T Consensus 63 ~~~g~~l~ 70 (70)
T PF14259_consen 63 EIDGRKLR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECCEEcC
Confidence 99999884
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.27 E-value=2.3e-11 Score=121.53 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEe
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSH 415 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~ 415 (548)
.++|||+|||+.+++++|+++|+.| |.|.+|.|+.+.. .+|||||+|.+.++|..||.+.+..|.|+.|.|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~----G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS----GDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEe
Confidence 5799999999999999999999999 9999999999853 47899999999999999997556999999999999
Q ss_pred eecC
Q 008920 416 AQQN 419 (548)
Q Consensus 416 Ak~~ 419 (548)
+..-
T Consensus 77 a~~~ 80 (260)
T PLN03120 77 AEDY 80 (260)
T ss_pred ccCC
Confidence 8754
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.3e-11 Score=115.75 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=98.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
..++|||+|||.++-+.+|.++|.+| |.|..|.|..-+ .+.+||||+|+++-+|+.||..-+ ..+.|..|+|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEE
Confidence 56899999999999999999999999 899999886542 346799999999999999998877 9999999999
Q ss_pred EeeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCccccccCCC
Q 008920 414 SHAQQNCTPSKRKDVAPAVNSPPKKFVLDSRTLGSGNRSNSKVAMSYQGLQASKSCTQKKVHSGSS 479 (548)
Q Consensus 414 ~~Ak~~~~~~~rr~~~~~~~g~~~k~~~~~r~~~~~~~~~~~~~~~~~G~ras~s~~~kr~~~~~~ 479 (548)
.|+..-.. ...++..-..+|+.+...++. .......+.......|+.+|.||..-+.|.+..
T Consensus 78 Efprggr~-s~~~~G~y~gggrgGgg~gg~---rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea 139 (241)
T KOG0105|consen 78 EFPRGGRS-SSDRRGSYSGGGRGGGGGGGR---RGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA 139 (241)
T ss_pred EeccCCCc-ccccccccCCCCCCCCCCCcc---cCCcccccceeEEEecCCCCCchHHHHHHHHhh
Confidence 99876431 111111111122221112222 222333346778899999999999999886433
No 62
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.27 E-value=1e-10 Score=120.81 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=130.0
Q ss_pred ccEEEEcCCC-CCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 225 LRTIFVGNLP-LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 225 ~rtVfVgNLP-~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
...|.|.||. ..+|.+.|..+|.-||.|..|.|+... +-.|+|+|.+...|+.|+ .
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 5789999995 468999999999999999999995422 247999999999999999 5
Q ss_pred hcceeecCceeEeecCCCcccccCCCC--------------------------CCcCCCccEEEEeCCCCCCCHHHHHHH
Q 008920 303 FNMAVIGGNHIRLDRACPPRKKLKGED--------------------------APLYDIKKTVFVGNLPFDVKDEEIYQL 356 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~~--------------------------~~~~~~~~tLfV~NLp~~~teedL~~~ 356 (548)
|+|..+.|+.|+|.++....-....+. ...++++.+|++.|+|.++++++|..+
T Consensus 355 L~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~ 434 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNL 434 (492)
T ss_pred hhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHh
Confidence 999999999999999875422211110 123456789999999999999999999
Q ss_pred HhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC-eEEEEEeeec
Q 008920 357 FCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD-RELRLSHAQQ 418 (548)
Q Consensus 357 F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G-r~I~V~~Ak~ 418 (548)
|..-| |.|....+. +..+-+|++.+.+.++|..|+-.++ +.+++ .-|+|+|++.
T Consensus 435 f~~~g---~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 435 FQEPG---GQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hhcCC---ceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99884 444444332 2235599999999999999987776 77776 4899999875
No 63
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.1e-12 Score=122.43 Aligned_cols=86 Identities=21% Similarity=0.527 Sum_probs=79.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
+-.+.-|||||||+.+|+.||..+|++| |.|++|.|++|..||.++||||+.|++.-+...|+..+| ..|.||.|
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 4567889999999999999999999999 999999999999999999999999999999999998888 99999999
Q ss_pred EEEeeecCCCC
Q 008920 412 RLSHAQQNCTP 422 (548)
Q Consensus 412 ~V~~Ak~~~~~ 422 (548)
+|.+...-..|
T Consensus 108 rVDHv~~Yk~p 118 (219)
T KOG0126|consen 108 RVDHVSNYKKP 118 (219)
T ss_pred EeeecccccCC
Confidence 99998755444
No 64
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.9e-11 Score=120.33 Aligned_cols=76 Identities=26% Similarity=0.264 Sum_probs=69.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
..||||+||++.+|+++|++||+.||.|.+|.|+++. ...|||||+|.++++|..||.|+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--------------------et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--------------------EYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--------------------CcceEEEEEECCHHHHHHHHhcC
Confidence 4799999999999999999999999999999996532 24579999999999999999999
Q ss_pred ceeecCceeEeecCCC
Q 008920 305 MAVIGGNHIRLDRACP 320 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~ 320 (548)
|..|.++.|.|..+..
T Consensus 65 Ga~l~d~~I~It~~~~ 80 (243)
T PLN03121 65 GATIVDQRVCITRWGQ 80 (243)
T ss_pred CCeeCCceEEEEeCcc
Confidence 9999999999998753
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=119.97 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=71.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
.+.||||+|+|.+..+.|+.+|++||+|....|++|. .+|+++||+||+|.+.++|..|++-.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~-----------------~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDK-----------------NTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEecc-----------------CCccccceeeEEeecHHHHHHHhcCC
Confidence 4689999999999999999999999999999997765 35679999999999999999999877
Q ss_pred ceeecCceeEeecCCC
Q 008920 305 MAVIGGNHIRLDRACP 320 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~ 320 (548)
.-+|+||...|.++.-
T Consensus 75 ~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 75 NPIIDGRKANCNLASL 90 (247)
T ss_pred CCcccccccccchhhh
Confidence 7889999999988764
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=114.44 Aligned_cols=75 Identities=27% Similarity=0.464 Sum_probs=68.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.+.||||||+..+++.+|..+|..||+|.+|+|-..| -|||||+|+++.+|..|+ .|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----------------------PGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----------------------PGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----------------------CCceEEeccCcccHHHHHhhc
Confidence 5789999999999999999999999999999994432 389999999999999999 69
Q ss_pred cceeecCceeEeecCCCc
Q 008920 304 NMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~ 321 (548)
+|..|.|..|.|+++...
T Consensus 68 DG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCccccCceEEEEeecCC
Confidence 999999999999998643
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.6e-11 Score=108.85 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=75.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
.++||||+||++.++|++|+++|+.+ |+|..|.+-.|+.+..+-|||||+|.+.++|..||.-++ ..|..++|+|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 47899999999999999999999999 999999998999899999999999999999999999988 9999999999
Q ss_pred Eeeec
Q 008920 414 SHAQQ 418 (548)
Q Consensus 414 ~~Ak~ 418 (548)
.|..-
T Consensus 111 D~D~G 115 (153)
T KOG0121|consen 111 DWDAG 115 (153)
T ss_pred ecccc
Confidence 99653
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.6e-10 Score=107.68 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=70.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
..+.|||+||+..++..+|..+|..| |.|..|.|...+ .|||||+|+++-+|..|+..|+ ..|+|..|+|
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 46899999999999999999999999 899999988764 7999999999999999999998 9999999999
Q ss_pred EeeecC
Q 008920 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.++.-.
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 998754
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=5.3e-11 Score=120.11 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=76.7
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008920 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
..+..+.|+|.||||..-+-||+.+|.+| |.|.+|.|+.+. ..++|||||+|++.++|++|-..|+ ..+.||+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 34556899999999999999999999999 999999999883 4589999999999999999998888 9999999
Q ss_pred EEEEeeecCCCC
Q 008920 411 LRLSHAQQNCTP 422 (548)
Q Consensus 411 I~V~~Ak~~~~~ 422 (548)
|.|..|..+...
T Consensus 166 IEVn~ATarV~n 177 (376)
T KOG0125|consen 166 IEVNNATARVHN 177 (376)
T ss_pred EEEeccchhhcc
Confidence 999999887433
No 70
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=2.2e-11 Score=124.80 Aligned_cols=171 Identities=18% Similarity=0.268 Sum_probs=131.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhc----CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~f----G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.-.|-+++||+++++.++..||..- |-.+.|.+++.+ +|+..|-|||.|..+++|+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp------------------dgrpTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP------------------DGRPTGDAFVLFACEEDAQFA 222 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC------------------CCCcccceEEEecCHHHHHHH
Confidence 3578899999999999999999742 234566664433 456789999999999999999
Q ss_pred HHhcceeecCceeEeecCCCccc----------cc------------CCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHh
Q 008920 301 LAFNMAVIGGNHIRLDRACPPRK----------KL------------KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (548)
Q Consensus 301 l~lng~~~~gr~I~V~~a~~~~k----------~~------------~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~ 358 (548)
|..|...|+-|.|.+-++....- .. .....+......||.+++||+..+-++|..||.
T Consensus 223 L~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg 302 (508)
T KOG1365|consen 223 LRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG 302 (508)
T ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH
Confidence 98888888888877766431100 00 000022233478999999999999999999999
Q ss_pred ccCCCCCCeEE--EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeee
Q 008920 359 GLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQ 417 (548)
Q Consensus 359 ~~g~~~G~I~~--VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak 417 (548)
.|. -.|.. |.++.+ ..|++.|-|||+|.+.+.|..|....+ ..+.+|.|.|-.+.
T Consensus 303 dFa---~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 303 DFA---TDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred HHh---hhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 984 34544 888888 569999999999999999999987776 66679999998775
No 71
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.5e-11 Score=116.40 Aligned_cols=83 Identities=22% Similarity=0.373 Sum_probs=79.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||++|...+++.-|...|-+| |.|.+|.++.|..+++++|||||+|...++|.+||..|| ..|.||.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTI 82 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeE
Confidence 4567999999999999999999999999 999999999999999999999999999999999999999 99999999
Q ss_pred EEEeeecC
Q 008920 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
+|.||.|.
T Consensus 83 rVN~AkP~ 90 (298)
T KOG0111|consen 83 RVNLAKPE 90 (298)
T ss_pred EEeecCCc
Confidence 99999986
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=1.7e-10 Score=90.55 Aligned_cols=71 Identities=39% Similarity=0.659 Sum_probs=65.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
+|||+|||..+++++|+++|..| |.|..+.++.+. +.+.|+|||+|.+.++|..|+..++ ..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999 899999999885 7788999999999999999999888 99999999873
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=100.16 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=70.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...+.|||.|||+++|.+++.++|..||.|..|+|-. +...+|.|||+|++..+|.+|+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~--------------------~k~TrGTAFVVYedi~dAk~A~d 75 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN--------------------TKETRGTAFVVYEDIFDAKKACD 75 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecC--------------------ccCcCceEEEEehHhhhHHHHHH
Confidence 3468999999999999999999999999999999822 2236799999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008920 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.|+|..+.++.|.|.+.++.
T Consensus 76 hlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 76 HLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred HhcccccCCceEEEEecCHH
Confidence 59999999999999998754
No 74
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=104.23 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=79.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
......|||.++...+++++|.+.|+.| |.|.++.|-.|+.||..+|||+|+|.+..+|+.|+..+| ..|.|..|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 3456789999999999999999999999 999999999999999999999999999999999999999 99999999
Q ss_pred EEEeeecCCC
Q 008920 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.||.....
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999987543
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.14 E-value=1.2e-10 Score=122.57 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=71.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCH--HHHHHHHHHcC-CccCCeEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR--EAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~--e~A~~Al~~ln-~~l~Gr~I 411 (548)
...+||||||++.+++++|..+|..| |.|..|.|++ .+| +|||||+|.+. .++.+||..|| ..+.|+.|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 45789999999999999999999999 9999999994 467 99999999987 78999999888 99999999
Q ss_pred EEEeeecC
Q 008920 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
+|..|++.
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99999886
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.14 E-value=1.9e-10 Score=112.81 Aligned_cols=79 Identities=38% Similarity=0.665 Sum_probs=76.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
..+|||+|||+.+++++|..+|..| |.|..|.|+.+..++.++|||||.|.+.++|..|+..++ ..|.|+.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 6999999999999999999999999 899999999998899999999999999999999999998 99999999999
Q ss_pred eeec
Q 008920 415 HAQQ 418 (548)
Q Consensus 415 ~Ak~ 418 (548)
++.+
T Consensus 191 ~~~~ 194 (306)
T COG0724 191 KAQP 194 (306)
T ss_pred cccc
Confidence 9764
No 77
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.13 E-value=3e-10 Score=111.93 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=70.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLS 414 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~ 414 (548)
...+|||+||++.+|+++|++||+.| |.|.+|.|++|. ...|||||+|.+.++|..||.+.+..|.|+.|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~----G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHC----GAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhc----CCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEE
Confidence 45899999999999999999999999 999999999984 44589999999999999999877799999999999
Q ss_pred eeec
Q 008920 415 HAQQ 418 (548)
Q Consensus 415 ~Ak~ 418 (548)
.+..
T Consensus 77 ~~~~ 80 (243)
T PLN03121 77 RWGQ 80 (243)
T ss_pred eCcc
Confidence 8764
No 78
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=2.6e-10 Score=89.09 Aligned_cols=70 Identities=37% Similarity=0.629 Sum_probs=65.5
Q ss_pred EeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 341 V~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
|+|||..+++++|+.+|..| |.|..|.+..+..++.++|||||+|.+.++|..|+..++ ..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999 899999999988789999999999999999999999998 88999998873
No 79
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1e-11 Score=116.20 Aligned_cols=82 Identities=23% Similarity=0.380 Sum_probs=73.6
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
-+++.-|||||||+..|+.+|.-+|++||+|..|.|+++. .+|.++||||+.|++..+...|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk-----------------~TGKSKGFaFLcYEDQRSTILAV 94 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK-----------------KTGKSKGFAFLCYEDQRSTILAV 94 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC-----------------CCCcccceEEEEecCccceEEEE
Confidence 3456789999999999999999999999999999997765 35779999999999999999999
Q ss_pred -HhcceeecCceeEeecCCC
Q 008920 302 -AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~ 320 (548)
.|||..|.||.|+|+....
T Consensus 95 DN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 95 DNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred eccCCceecceeEEeeeccc
Confidence 5999999999999998753
No 80
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.6e-10 Score=112.67 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=72.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
+..+|-|.|||.++++.+|.+||..||.|..|.|..+. .+|.++|||||.|.+.++|.+|| .
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK-----------------~TG~~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK-----------------ETGLSKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcc-----------------ccCcccceEEEEEecHHHHHHHHHH
Confidence 56799999999999999999999999999999996544 35778899999999999999999 5
Q ss_pred hcceeecCceeEeecCCC
Q 008920 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
|||.-++.--|+|.|+.|
T Consensus 251 LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWSKP 268 (270)
T ss_pred ccCcccceEEEEEEecCC
Confidence 999999999999999875
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=3.3e-10 Score=88.87 Aligned_cols=71 Identities=39% Similarity=0.662 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (548)
+|||+|||..++.++|..+|..||.|..+.+...+ +.+.|+|||+|.+.++|..|+ .+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-------------------~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-------------------GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-------------------CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 59999999999999999999999999999885432 236699999999999999999 5899
Q ss_pred eeecCceeEee
Q 008920 306 AVIGGNHIRLD 316 (548)
Q Consensus 306 ~~~~gr~I~V~ 316 (548)
..+.|+.|.|.
T Consensus 62 ~~~~~~~i~v~ 72 (72)
T smart00362 62 TKLGGRPLRVE 72 (72)
T ss_pred cEECCEEEeeC
Confidence 99999998873
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.12 E-value=1.9e-10 Score=121.09 Aligned_cols=76 Identities=28% Similarity=0.413 Sum_probs=67.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCH--HHHHHHH-
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE--QSTEAAL- 301 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~--e~A~~Al- 301 (548)
..+||||||++.+++++|..+|..||.|..|.|++ . +| +|||||+|.+. .++.+||
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR----E---------------TG--RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR----T---------------KG--RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec----c---------------cC--CceEEEEecCCcHHHHHHHHH
Confidence 36899999999999999999999999999999952 1 22 69999999988 6789999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008920 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.|||..+.|+.|+|..+.+.
T Consensus 69 aLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 69 TYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred HhcCCeecCceeEEeeccHH
Confidence 69999999999999998753
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=4.4e-10 Score=121.38 Aligned_cols=174 Identities=20% Similarity=0.277 Sum_probs=131.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
....+||++||...++.++.++...||++....+..+. .+|.++||||.+|.++--...|++
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~-----------------~~g~skg~af~ey~dpsvtd~A~ag 350 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS-----------------ATGNSKGFAFCEYCDPSVTDQAIAG 350 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc-----------------ccccccceeeeeeeCCcchhhhhcc
Confidence 34579999999999999999999999999998885544 235688999999999999999995
Q ss_pred hcceeecCceeEeecCCCcccccCCCCC---------------CcCCCccEEEEeCC--CCCC-CH-------HHHHHHH
Q 008920 303 FNMAVIGGNHIRLDRACPPRKKLKGEDA---------------PLYDIKKTVFVGNL--PFDV-KD-------EEIYQLF 357 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~~~---------------~~~~~~~tLfV~NL--p~~~-te-------edL~~~F 357 (548)
|||..+++..|.|..+............ ....++..|++.|+ |.++ .+ ++|+.-+
T Consensus 351 LnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec 430 (500)
T KOG0120|consen 351 LNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC 430 (500)
T ss_pred cchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh
Confidence 9999999999999998754322111111 11122344444443 1111 11 4556666
Q ss_pred hccCCCCCCeEEEEEeec-C--CCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008920 358 CGLNDLESSVEAVRVIRH-P--HMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 358 ~~~g~~~G~I~~VrI~~d-~--~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
..| |.|..|.|+++ . .-.-+.|-.||+|.+.++|+.|+..|+ ..|.||.|...|..+
T Consensus 431 ~k~----g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 431 AKF----GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred ccc----CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 777 89999999887 2 234456778999999999999999998 999999999999764
No 84
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=9.7e-11 Score=109.79 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=76.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008920 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
+...+|||+||+..++++.|+++|-+. |.|++++|++|..++...|||||+|.+.++|+-|++.|| ..|.|++|+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqa----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQA----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhc----CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999 999999999
Q ss_pred EEeee
Q 008920 413 LSHAQ 417 (548)
Q Consensus 413 V~~Ak 417 (548)
|..+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 99887
No 85
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.3e-09 Score=111.19 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=70.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
+....|||..+-++.+++||+..|+.||+|..|.|-+.+. .+.++||+||+|.+..+...|+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-----------------~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----------------CCCccceeeEEeccccchHHHhh
Confidence 4457899999999999999999999999999999966552 2358899999999999999999
Q ss_pred HhcceeecCceeEeecCC
Q 008920 302 AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~ 319 (548)
.||-..++|..|+|..+.
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 599999999999998864
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.07 E-value=1e-09 Score=86.58 Aligned_cols=73 Identities=40% Similarity=0.661 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
+|+|+|||..+++++|+++|..| |.|..+.+..+..+ .+.|+|||+|.+.++|..|+..++ ..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999 89999999988654 778999999999999999999888 769999999875
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.07 E-value=2.8e-09 Score=111.03 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=65.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
.++|||+|||+++||..|++-|..| |.|.++.|+ ..|.++| .|.|.++++|+.|+.+++ ..|.||.|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~----G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREI----GHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhc----cceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 4689999999999999999999999 899999884 3477776 899999999999999998 99999999999
Q ss_pred ee
Q 008920 415 HA 416 (548)
Q Consensus 415 ~A 416 (548)
|.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 84
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=115.79 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.+.|+|.|||+..-+-||+.+|.+||.|.+|.|+.. +..++||+||+|++.++|++|- +|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-------------------ERGSKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-------------------ERGSKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEec-------------------cCCCCccceEEecChhhHHHHHHHh
Confidence 368999999999999999999999999999999542 2338899999999999999999 69
Q ss_pred cceeecCceeEeecCCCc
Q 008920 304 NMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~ 321 (548)
||+.+.||.|.|..+...
T Consensus 157 Hgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 157 HGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hcceeeceEEEEeccchh
Confidence 999999999999998753
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.07 E-value=2.8e-09 Score=112.95 Aligned_cols=169 Identities=19% Similarity=0.228 Sum_probs=128.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeE-EEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~s-Vri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...+|-+++||+.||+++|.+||+..-.|.. |.|+.++ .++.+|-|||+|++.+.|+.||.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~------------------rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ------------------RGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC------------------CCCcccceEEEecCHHHHHHHHH
Confidence 3468999999999999999999998776655 3332221 34578999999999999999998
Q ss_pred hcceeecCceeEeecCCCcc------------------cc---cCC----------------------------------
Q 008920 303 FNMAVIGGNHIRLDRACPPR------------------KK---LKG---------------------------------- 327 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~------------------k~---~~~---------------------------------- 327 (548)
.|...|.-|.|.|..+.... .. ...
T Consensus 164 rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 164 RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 88888888888887753110 00 000
Q ss_pred C--C---------------------------CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC
Q 008920 328 E--D---------------------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (548)
Q Consensus 328 ~--~---------------------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t 378 (548)
. . .........|+.++||+..++.+|..+|+.. ....|.|-.. .+
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-----~p~~v~i~ig-~d 317 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-----NPYRVHIEIG-PD 317 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-----CceeEEEEeC-CC
Confidence 0 0 0000112688999999999999999999986 5557777777 46
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEee
Q 008920 379 RVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA 416 (548)
Q Consensus 379 g~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~A 416 (548)
|+..|-|+|+|.+.++|..|+...+..|..+-|.+..-
T Consensus 318 Gr~TGEAdveF~t~edav~Amskd~anm~hrYVElFln 355 (510)
T KOG4211|consen 318 GRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFLN 355 (510)
T ss_pred CccCCcceeecccchhhHhhhccCCcccCcceeeeccc
Confidence 99999999999999999999988888888887776543
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.06 E-value=9.6e-10 Score=86.70 Aligned_cols=73 Identities=38% Similarity=0.601 Sum_probs=63.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (548)
+|+|+|||..+++++|.++|..||.|..+.+...+.. ...|+|||+|.+.++|..|+ .+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 4899999999999999999999999999998654321 25689999999999999999 5899
Q ss_pred eeecCceeEeec
Q 008920 306 AVIGGNHIRLDR 317 (548)
Q Consensus 306 ~~~~gr~I~V~~ 317 (548)
..+.|+.|.|.+
T Consensus 63 ~~~~~~~~~v~~ 74 (74)
T cd00590 63 KELGGRPLRVEF 74 (74)
T ss_pred CeECCeEEEEeC
Confidence 999999998864
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=3.4e-10 Score=121.45 Aligned_cols=79 Identities=28% Similarity=0.556 Sum_probs=76.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
+.|||||+|+++++++|..+|+.. |.|.+++++.|+.||.++||||++|.+.++|..|++.|| ..+.||+|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 899999999999999999999999 899999999999999999999999999999999999999 999999999999
Q ss_pred eecC
Q 008920 416 AQQN 419 (548)
Q Consensus 416 Ak~~ 419 (548)
+...
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 9764
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.6e-10 Score=108.78 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=71.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
..+|.|-||.+-++.++|..+|++||.|-.|.|..+.+ +..++|||||.|....+|+.|| +|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~-----------------Tr~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY-----------------TRQSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccc-----------------cccccceeEEEeeecchHHHHHHhh
Confidence 47899999999999999999999999999999977764 4568899999999999999999 69
Q ss_pred cceeecCceeEeecCC
Q 008920 304 NMAVIGGNHIRLDRAC 319 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~ 319 (548)
+|.+|+|+.|.|++|.
T Consensus 76 DG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 76 DGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeeccceeeehhhh
Confidence 9999999999999985
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=8.8e-10 Score=94.60 Aligned_cols=79 Identities=22% Similarity=0.461 Sum_probs=71.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008920 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
+..+-|||+|||+.+|.+++.++|..| |.|..|+|-..+. .+|.|||.|++..+|..|++.|. ..+.++.|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 346889999999999999999999999 9999999876654 58999999999999999999888 999999999
Q ss_pred EEeeecC
Q 008920 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|-|..+.
T Consensus 89 vlyyq~~ 95 (124)
T KOG0114|consen 89 VLYYQPE 95 (124)
T ss_pred EEecCHH
Confidence 9998764
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.03 E-value=9.9e-10 Score=85.74 Aligned_cols=70 Identities=36% Similarity=0.544 Sum_probs=60.7
Q ss_pred EcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcceee
Q 008920 230 VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVI 308 (548)
Q Consensus 230 VgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~ 308 (548)
|+|||..+++++|..+|..||.|..|.+...+. ++.++|||||+|.+.++|..|+ .+++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~-----------------~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD-----------------TGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC-----------------CCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 689999999999999999999999998854331 2347799999999999999999 5899999
Q ss_pred cCceeEee
Q 008920 309 GGNHIRLD 316 (548)
Q Consensus 309 ~gr~I~V~ 316 (548)
.|+.|.|.
T Consensus 64 ~~~~~~v~ 71 (71)
T smart00360 64 DGRPLKVK 71 (71)
T ss_pred CCcEEEeC
Confidence 99998873
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.03 E-value=3.1e-10 Score=116.32 Aligned_cols=177 Identities=21% Similarity=0.223 Sum_probs=137.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
...++|++++.+.+.+.++..+|..+|.+..+.+.. ..+...++|+++|.|...+.+..||.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~-----------------~~~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSS-----------------LEDSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhh-----------------hccccccccceeeccccHHHHHHHHHh
Confidence 468999999999999999999999999776665522 123445889999999999999999987
Q ss_pred cce-eecCceeEeecCCCcccccCCCC-CCcCCCccEEE-EeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCC
Q 008920 304 NMA-VIGGNHIRLDRACPPRKKLKGED-APLYDIKKTVF-VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (548)
Q Consensus 304 ng~-~~~gr~I~V~~a~~~~k~~~~~~-~~~~~~~~tLf-V~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~ 380 (548)
.+. .+.++.+................ ........++| |+||++.+++++|+.+|..+ |.|..|+++.+..++.
T Consensus 150 s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESGD 225 (285)
T ss_pred hhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCccc
Confidence 775 55566555554432221100000 11122334455 99999999999999999998 8999999999999999
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeecCCC
Q 008920 381 GKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNCT 421 (548)
Q Consensus 381 srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~~~~ 421 (548)
+.|||||.|.....+..++...+..+.++++.|.+..+...
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCcc
Confidence 99999999999999999998833999999999999887643
No 96
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=6.8e-10 Score=119.92 Aligned_cols=173 Identities=21% Similarity=0.415 Sum_probs=140.1
Q ss_pred cCCCcccEEEEcCCCCCCcHHHHHHHhhhc-----------C-CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceE
Q 008920 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKF-----------G-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287 (548)
Q Consensus 220 ~~~~~~rtVfVgNLP~~~tee~L~~~Fs~f-----------G-~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~A 287 (548)
....+.+.++|+++|+.++++.+..+|..- | .|.+|.| .....||
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-----------------------n~~~nfa 226 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-----------------------NLEKNFA 226 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-----------------------cccccce
Confidence 334567889999999999999999999853 1 2344444 1255799
Q ss_pred EEEecCHHHHHHHHHhcceeecCceeEeecCCCcccc--------------cCCCCCCcCCCccEEEEeCCCCCCCHHHH
Q 008920 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKK--------------LKGEDAPLYDIKKTVFVGNLPFDVKDEEI 353 (548)
Q Consensus 288 FV~F~s~e~A~~Al~lng~~~~gr~I~V~~a~~~~k~--------------~~~~~~~~~~~~~tLfV~NLp~~~teedL 353 (548)
||+|.+.+.|..|+.+++..|.|+.+.+......... .........+....+||++||..+++.++
T Consensus 227 ~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~ 306 (500)
T KOG0120|consen 227 FIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQV 306 (500)
T ss_pred eEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHH
Confidence 9999999999999999999999987777554321100 00011233445678999999999999999
Q ss_pred HHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 354 YQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 354 ~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
.+++..| |.+....++.|..+|.++||||.+|.+......|+..+| ..+++..|.|..|-..
T Consensus 307 ~Ell~~f----g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 307 KELLDSF----GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred HHHHHhc----ccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 9999999 899999999999999999999999999999999999998 8899999999999765
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.97 E-value=1.3e-08 Score=105.59 Aligned_cols=167 Identities=19% Similarity=0.251 Sum_probs=127.1
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcce-EEEEecCHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAA 300 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~-AFV~F~s~e~A~~A 300 (548)
...--.++|+|+-+-++-+-|..+|+.||.|..|.- ++ ++.|| |+|+|.+.+.|+.|
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT----F~------------------Knn~FQALvQy~d~~sAq~A 204 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT----FT------------------KNNGFQALVQYTDAVSAQAA 204 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE----Ee------------------cccchhhhhhccchhhHHHH
Confidence 334457889999999999999999999999977644 21 12344 99999999999999
Q ss_pred H-HhcceeecC--ceeEeecCCCc----------ccc------cCCC-----------------------C---------
Q 008920 301 L-AFNMAVIGG--NHIRLDRACPP----------RKK------LKGE-----------------------D--------- 329 (548)
Q Consensus 301 l-~lng~~~~g--r~I~V~~a~~~----------~k~------~~~~-----------------------~--------- 329 (548)
- .|+|..|.. ..|+|+++.-. ... ..++ .
T Consensus 205 K~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a 284 (492)
T KOG1190|consen 205 KLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGA 284 (492)
T ss_pred HHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhh
Confidence 7 788887643 46777765311 000 0000 0
Q ss_pred ----CCcCCC--ccEEEEeCCCC-CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc
Q 008920 330 ----APLYDI--KKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402 (548)
Q Consensus 330 ----~~~~~~--~~tLfV~NLp~-~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l 402 (548)
.....+ ...|.|.||.. .+|.+-|..+|+-| |+|..|.|+.+.. --|.|+|.+...|+.|+..|
T Consensus 285 ~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY----GdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL 355 (492)
T KOG1190|consen 285 NAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY----GDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHL 355 (492)
T ss_pred cccccccccCCCceEEEEecCchhccchhHHHHHHhhh----cceEEEEeeecCC-----cceeeeecchhHHHHHHHHh
Confidence 000111 46788888865 58999999999999 9999999998852 47999999999999999999
Q ss_pred C-CccCCeEEEEEeeecC
Q 008920 403 N-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 403 n-~~l~Gr~I~V~~Ak~~ 419 (548)
+ ..|.|+.|+|.+++-.
T Consensus 356 ~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 356 EGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred hcceecCceEEEeeccCc
Confidence 8 9999999999999865
No 98
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=5.3e-10 Score=125.01 Aligned_cols=161 Identities=20% Similarity=0.272 Sum_probs=132.0
Q ss_pred cCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008920 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 220 ~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
|+....+|||+|||+..+++.+|+..|..+|.|..|.|-+.. -++..-||||.|.+...+..
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~------------------~~~esa~~f~~~~n~dmtp~ 428 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH------------------IKTESAYAFVSLLNTDMTPS 428 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC------------------CCcccchhhhhhhccccCcc
Confidence 456778999999999999999999999999999999983322 12355799999999999999
Q ss_pred HH-HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC
Q 008920 300 AL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (548)
Q Consensus 300 Al-~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t 378 (548)
|+ ++.+..|..-.+.+.+..+ .......|+|++|+.++....|...|..| |.|..|.+-
T Consensus 429 ak~e~s~~~I~~g~~r~glG~~-----------kst~ttr~~sgglg~w~p~~~l~r~fd~f----Gpir~Idy~----- 488 (975)
T KOG0112|consen 429 AKFEESGPLIGNGTHRIGLGQP-----------KSTPTTRLQSGGLGPWSPVSRLNREFDRF----GPIRIIDYR----- 488 (975)
T ss_pred cchhhcCCccccCccccccccc-----------ccccceeeccCCCCCCChHHHHHHHhhcc----Ccceeeecc-----
Confidence 87 7887777666666655532 24467889999999999999999999999 888876542
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcC-CccCC--eEEEEEeeecC
Q 008920 379 RVGKGIAYVLFKTREAANLVIKRRN-LKLRD--RELRLSHAQQN 419 (548)
Q Consensus 379 g~srG~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~V~~Ak~~ 419 (548)
+.-.||||.|.+...|+.|+..+- ..|+| +.|+|.|+.+.
T Consensus 489 -hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 489 -HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred -cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 224599999999999999996654 88877 78999999876
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.4e-09 Score=97.41 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=69.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
...|||.++-..+|+++|...|..||+|.+|.|-.+. .+|-.+|||+|+|.+...|+.|+ .+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR-----------------RtGy~KGYaLvEYet~keAq~A~~~~ 134 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR-----------------RTGYVKGYALVEYETLKEAQAAIDAL 134 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccc-----------------ccccccceeeeehHhHHHHHHHHHhc
Confidence 4689999999999999999999999999999883222 35567899999999999999999 69
Q ss_pred cceeecCceeEeecCC
Q 008920 304 NMAVIGGNHIRLDRAC 319 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~ 319 (548)
||..|.|..|.|+|+.
T Consensus 135 Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 135 NGAELLGQNVSVDWCF 150 (170)
T ss_pred cchhhhCCceeEEEEE
Confidence 9999999999999985
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=9.6e-10 Score=105.67 Aligned_cols=83 Identities=28% Similarity=0.460 Sum_probs=73.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..+|||||+|...+++.-|...|-+||.|..|.|+.+ +.+++++|||||+|...++|.+|| .
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD-----------------yesqkHRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD-----------------YESQKHRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccc-----------------hhcccccceeEEEeeccchhHHHhhc
Confidence 3589999999999999999999999999999998543 334568999999999999999999 5
Q ss_pred hcceeecCceeEeecCCCccc
Q 008920 303 FNMAVIGGNHIRLDRACPPRK 323 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k 323 (548)
||+..|.|+.|+|.++.|...
T Consensus 72 MnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 72 MNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred CchhhhcceeEEEeecCCccc
Confidence 999999999999999987643
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=3.2e-09 Score=114.02 Aligned_cols=78 Identities=24% Similarity=0.399 Sum_probs=71.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-ln 304 (548)
+.|||||||+++++++|..+|+..|.|.++++..|+. +|..+||||++|.+.+.|..|++ ||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~-----------------tG~~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRE-----------------TGKPKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccccc-----------------CCCcCceeeEecCchhhHHHHHHhcC
Confidence 7899999999999999999999999999999976652 45677999999999999999995 99
Q ss_pred ceeecCceeEeecCCC
Q 008920 305 MAVIGGNHIRLDRACP 320 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~ 320 (548)
|..+.|+.|+|.|+..
T Consensus 82 g~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASN 97 (435)
T ss_pred CcccCCceEEeecccc
Confidence 9999999999999864
No 102
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.1e-09 Score=106.17 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=78.7
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc-CCccCCeE
Q 008920 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR-NLKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l-n~~l~Gr~ 410 (548)
..++.+.|||--|.+.++++||.-+|+.| |.|.+|.|++|..||.+-.||||+|.+.++++.|.-.| |..|.++.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 34567899999999999999999999999 99999999999999999999999999999999997555 59999999
Q ss_pred EEEEeeecCCC
Q 008920 411 LRLSHAQQNCT 421 (548)
Q Consensus 411 I~V~~Ak~~~~ 421 (548)
|+|.|++..+.
T Consensus 311 IHVDFSQSVsk 321 (479)
T KOG0415|consen 311 IHVDFSQSVSK 321 (479)
T ss_pred EEeehhhhhhh
Confidence 99999987643
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=3.8e-10 Score=125.67 Aligned_cols=152 Identities=26% Similarity=0.309 Sum_probs=127.5
Q ss_pred cCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008920 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 220 ~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
++-++..++||.||++.+.+.+|...|..+|.|..|++. ...+.+..+|+|||+|..++++.+
T Consensus 662 n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~-----------------~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 662 NEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV-----------------IHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred hHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH-----------------HHhhccccccceeeEeecCCchhh
Confidence 334567799999999999999999999999998888773 112345677999999999999999
Q ss_pred HHHhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCC
Q 008920 300 ALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (548)
Q Consensus 300 Al~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg 379 (548)
||.+....+.| ...|||.|+|+..|.+.|+.+|..+ |.+.+++++..+ .|
T Consensus 725 aV~f~d~~~~g-------------------------K~~v~i~g~pf~gt~e~~k~l~~~~----gn~~~~~~vt~r-~g 774 (881)
T KOG0128|consen 725 AVAFRDSCFFG-------------------------KISVAISGPPFQGTKEELKSLASKT----GNVTSLRLVTVR-AG 774 (881)
T ss_pred hhhhhhhhhhh-------------------------hhhhheeCCCCCCchHHHHhhcccc----CCccccchhhhh-cc
Confidence 99877666656 2348999999999999999999999 899999988884 69
Q ss_pred CCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008920 380 VGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 380 ~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
.++|.|||.|.+..++..++.... ..+.-+.+.|..+.|
T Consensus 775 kpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 775 KPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999999999999987666 666666777776555
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=9.1e-09 Score=83.38 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=53.9
Q ss_pred HHHHHHHHh----ccCCCCCCeEEEE-EeecCCC--CCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008920 350 DEEIYQLFC----GLNDLESSVEAVR-VIRHPHM--RVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 350 eedL~~~F~----~~g~~~G~I~~Vr-I~~d~~t--g~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
+++|+++|. .| |.|..|. |+.+..+ +.++|||||.|.+.++|..|+..|+ ..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~f----G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYF----GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhc----CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 88 8999995 7777666 8999999999999999999999888 9999999986
No 105
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=6e-10 Score=107.12 Aligned_cols=137 Identities=22% Similarity=0.276 Sum_probs=112.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-h
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (548)
.+||||+||...++++-|.++|-+-|+|..|.|+.+.. +..+ ||||.|.++-++..|+. +
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d------------------~~~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD------------------QEQK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc------------------CCCc-eeeeecccccchhhhhhhc
Confidence 38999999999999999999999999999999865432 2233 99999999999999996 6
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008920 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
||..+.++.|.|.+-+... . .-|...++++.+...|+.- |.+..+++.++.+ |+++.
T Consensus 70 ng~~l~~~e~q~~~r~G~s----------h--------apld~r~~~ei~~~v~s~a----~p~~~~R~~~~~d-~rnrn 126 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCGNS----------H--------APLDERVTEEILYEVFSQA----GPIEGVRIPTDND-GRNRN 126 (267)
T ss_pred ccchhccchhhcccccCCC----------c--------chhhhhcchhhheeeeccc----CCCCCcccccccc-CCccC
Confidence 9999999998887754210 0 0155668999999999988 8999999999965 88999
Q ss_pred EEEEEECCHHHHHHHHHHcC
Q 008920 384 IAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln 403 (548)
++||.+....+.-.++....
T Consensus 127 ~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 127 FGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ccchhhhhhhcCcHHhhhhc
Confidence 99999988777777776543
No 106
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.79 E-value=2.3e-08 Score=102.93 Aligned_cols=176 Identities=16% Similarity=0.186 Sum_probs=128.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
.+...|-.++||+..++.+|..||.-.....-.+.+ .....|...|+|.|.|.+++.-..|++
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aK-----------------OG~~qgrRnge~lvrf~d~e~Rdlalk 120 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRAL-----------------CLNAQGRRNGEALVRFVDPEGRDLALK 120 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceee-----------------eehhhhccccceEEEecCchhhhhhhH
Confidence 345677889999999999999999854322221211 112235567999999999999999999
Q ss_pred hcceeecCceeEeecCCCcccccCCCC-------CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeec
Q 008920 303 FNMAVIGGNHIRLDRACPPRKKLKGED-------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~~-------~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d 375 (548)
.|...+.++.|.|..+.....-.-... -....+.-.|.+++||+++++.|+..||...+.+-|.++.|-++..
T Consensus 121 Rhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r 200 (508)
T KOG1365|consen 121 RHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR 200 (508)
T ss_pred hhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC
Confidence 888899999999988865422111000 1111234567778999999999999999755444467778877776
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEee
Q 008920 376 PHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA 416 (548)
Q Consensus 376 ~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~A 416 (548)
+ .|+..|-|||.|...++|+.||...-..|+-|.|.|-.+
T Consensus 201 p-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 201 P-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred C-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4 589999999999999999999987766676677666554
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.77 E-value=2e-08 Score=77.43 Aligned_cols=55 Identities=27% Similarity=0.458 Sum_probs=47.4
Q ss_pred HHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-HhcceeecCceeEeecC
Q 008920 242 LIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 242 L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V~~a 318 (548)
|.++|++||.|..|.+... ..++|||+|.+.++|..|+ .||+..|.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~----------------------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK----------------------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT----------------------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6899999999999998321 1389999999999999999 59999999999999874
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=3.5e-08 Score=76.08 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=49.3
Q ss_pred HHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEee
Q 008920 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHA 416 (548)
Q Consensus 353 L~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~A 416 (548)
|..+|+.| |.|..|.+.... .|+|||+|.+.++|..|+..++ ..+.|++|+|.||
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCc----ccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999 999999987763 5899999999999999999888 9999999999996
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.72 E-value=2.3e-07 Score=95.47 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=123.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
.+-.|.|++|-..+++.+|.+.++.||+|.-|.++. .+..|.|+|++.+.|..|+.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-----------------------~~r~alvefedi~~akn~Vnf 86 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-----------------------HKRQALVEFEDIEGAKNCVNF 86 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecc-----------------------ccceeeeeeccccchhhheeh
Confidence 456899999999999999999999999998887732 34589999999999999984
Q ss_pred --hcceeecCceeEeecCCCcccccCCCCCCcCCCccEEE--EeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC
Q 008920 303 --FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF--VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (548)
Q Consensus 303 --lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLf--V~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t 378 (548)
-+...+.|..-.+.++........+.. . ..+...|. |-|--+.+|-+-|..++..+ |.|..|.|+.. +
T Consensus 87 aa~n~i~i~gq~Al~NyStsq~i~R~g~e-s-~~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkk--n 158 (494)
T KOG1456|consen 87 AADNQIYIAGQQALFNYSTSQCIERPGDE-S-ATPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKK--N 158 (494)
T ss_pred hccCcccccCchhhcccchhhhhccCCCC-C-CCCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEec--c
Confidence 356677888777777754322222211 1 12223333 44555678999999999998 99999887765 3
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcC-Ccc-CC-eEEEEEeeecC
Q 008920 379 RVGKGIAYVLFKTREAANLVIKRRN-LKL-RD-RELRLSHAQQN 419 (548)
Q Consensus 379 g~srG~AFV~F~~~e~A~~Al~~ln-~~l-~G-r~I~V~~Ak~~ 419 (548)
|. .|.|+|++.+.|++|-..|| ..| -| .+|.|.||+|.
T Consensus 159 gV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 159 GV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred ce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 43 79999999999999999988 444 34 79999999986
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.71 E-value=2.4e-08 Score=110.38 Aligned_cols=76 Identities=28% Similarity=0.418 Sum_probs=69.8
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
-.++|||||.|+..+++.+|..+|+.||.|.+|.|+- .+|||||.+...++|.+||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kalq 475 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKALQ 475 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHHH
Confidence 3578999999999999999999999999999999832 6699999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008920 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
+|+...+.+..|.|.|+...
T Consensus 476 kl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 476 KLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred HHhcccccceeeEEeeeccC
Confidence 79999999999999999754
No 111
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=3.6e-08 Score=100.63 Aligned_cols=76 Identities=28% Similarity=0.547 Sum_probs=68.3
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+....||||++|-..+++.+|++||.+||+|.+|++.. ..++|||+|.+.++|+.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------------------~~~CAFv~ftTR~aAE~Aa 281 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------------------RKGCAFVTFTTREAAEKAA 281 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------------------ccccceeeehhhHHHHHHH
Confidence 45578999999988999999999999999999999832 4579999999999999998
Q ss_pred H--hcceeecCceeEeecCCC
Q 008920 302 A--FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 ~--lng~~~~gr~I~V~~a~~ 320 (548)
+ ++...|.|..|.|.|..+
T Consensus 282 e~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 282 EKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HhhcceeeecceEEEEEeCCC
Confidence 4 788999999999999876
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=7.3e-08 Score=92.36 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=77.7
Q ss_pred CcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCe
Q 008920 331 PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDR 409 (548)
Q Consensus 331 ~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr 409 (548)
+.......+||..+|..+.+..|..+|.+|+ |.|..+++.++..||.++|||||+|++.+.|.-|-+.|| ..|.|+
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 3345567899999999999999999999996 899999999999999999999999999999999999888 888899
Q ss_pred EEEEEeeecC
Q 008920 410 ELRLSHAQQN 419 (548)
Q Consensus 410 ~I~V~~Ak~~ 419 (548)
.|.|.+-.|.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999987765
No 113
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.63 E-value=1.1e-08 Score=105.39 Aligned_cols=171 Identities=18% Similarity=0.172 Sum_probs=124.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhcc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNM 305 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~lng 305 (548)
..|.|.||.+.+|.++++.||.-+|.|..++|... +.+...| .....|||.|.+...+..|..|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~-~~d~~~p-------------v~sRtcyVkf~d~~sv~vaQhLtn 73 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPN-VDDSKIP-------------VISRTCYVKFLDSQSVTVAQHLTN 73 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCC-CCCccCc-------------ceeeeEEEeccCCcceeHHhhhcc
Confidence 48999999999999999999999999999998331 1222222 255789999999999999999989
Q ss_pred eeecCceeEeecCCCcccc-----------------cCCCC--------------------CCc----------CCCccE
Q 008920 306 AVIGGNHIRLDRACPPRKK-----------------LKGED--------------------APL----------YDIKKT 338 (548)
Q Consensus 306 ~~~~gr~I~V~~a~~~~k~-----------------~~~~~--------------------~~~----------~~~~~t 338 (548)
++|-++-|.|-++...... +..+. .|. ....++
T Consensus 74 tvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt 153 (479)
T KOG4676|consen 74 TVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRT 153 (479)
T ss_pred ceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhh
Confidence 9999998888775432100 00000 000 112368
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeec
Q 008920 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQ 418 (548)
Q Consensus 339 LfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~ 418 (548)
|+|.+|+..+...++.+.|..+ |.|.+.++.. +...-||-|.|........|+.+++..+.-+..++..-.|
T Consensus 154 ~~v~sl~~~~~l~e~~e~f~r~----Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 154 REVQSLISAAILPESGESFERK----GEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhcchhhhcchhhhhhhhhc----chhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhhcCc
Confidence 9999999999999999999999 7887766543 3345588899999999999999988655543333333333
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.6e-08 Score=99.87 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=72.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
.+...|||.-|.+-+|.++|.-+|+.||.|.+|.++++. .+|-+-.||||+|.+.+++++|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~-----------------ktgdsLqyaFiEFen~escE~AyF 299 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR-----------------KTGDSLQYAFIEFENKESCEQAYF 299 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecc-----------------cccchhheeeeeecchhhHHHHHh
Confidence 345789999999999999999999999999999996654 35567789999999999999998
Q ss_pred HhcceeecCceeEeecCCC
Q 008920 302 AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~ 320 (548)
.|+...|.++.|.|++++.
T Consensus 300 KMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 300 KMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred hhcceeeccceEEeehhhh
Confidence 8999999999999999864
No 115
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=6e-08 Score=96.99 Aligned_cols=75 Identities=20% Similarity=0.412 Sum_probs=69.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
..|||+|||..+++.+|+.+|++| |.|..|.|+.+ ||||..++...|..||..|+ ..|+|..|.|.-
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~y----gkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVea 70 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQY----GKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEA 70 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhh----CceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEe
Confidence 469999999999999999999999 99999999977 99999999999999999877 999999999999
Q ss_pred eecCCCCC
Q 008920 416 AQQNCTPS 423 (548)
Q Consensus 416 Ak~~~~~~ 423 (548)
++.++++.
T Consensus 71 SksKsk~s 78 (346)
T KOG0109|consen 71 SKSKSKAS 78 (346)
T ss_pred ccccCCCc
Confidence 98774443
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.60 E-value=1.2e-07 Score=92.10 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=71.5
Q ss_pred CccEEEEeCCCCCCCHHHHHH----HHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCe
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQ----LFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDR 409 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~----~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr 409 (548)
+..||||.||+..+..++|+. +|++| |.|..|.... +...+|.|||.|.+.+.|-.|+..|+ ..+.|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 344999999999999998888 99999 8999887764 46789999999999999999999887 999999
Q ss_pred EEEEEeeecCCC
Q 008920 410 ELRLSHAQQNCT 421 (548)
Q Consensus 410 ~I~V~~Ak~~~~ 421 (548)
+|+|.||+.++.
T Consensus 81 ~mriqyA~s~sd 92 (221)
T KOG4206|consen 81 PMRIQYAKSDSD 92 (221)
T ss_pred hhheecccCccc
Confidence 999999998744
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.60 E-value=1.7e-07 Score=75.90 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=50.2
Q ss_pred HHHHHHHhh----hcCCeeEEE-EeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-HhcceeecCce
Q 008920 239 KKTLIKEFI----KFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNH 312 (548)
Q Consensus 239 ee~L~~~Fs----~fG~I~sVr-i~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~ 312 (548)
+++|.++|+ .||.|.+|. |..++.+. .+.++|||||.|.+.++|..|+ .|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~---------------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY---------------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC---------------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578899998 999999985 53322110 1447799999999999999999 59999999999
Q ss_pred eEe
Q 008920 313 IRL 315 (548)
Q Consensus 313 I~V 315 (548)
|.+
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 976
No 118
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.59 E-value=4e-08 Score=101.45 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=78.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLS 414 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~ 414 (548)
..++|||++|+|+++++.|+..|.+| |.|..|.|++|+.+++++||+||+|.+.+....+|....+.|.|+.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~----Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQF----GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhccc----CceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccce
Confidence 56899999999999999999999999 99999999999999999999999999999999999888899999999999
Q ss_pred eeecCCCC
Q 008920 415 HAQQNCTP 422 (548)
Q Consensus 415 ~Ak~~~~~ 422 (548)
.|.++...
T Consensus 81 ~av~r~~~ 88 (311)
T KOG4205|consen 81 RAVSREDQ 88 (311)
T ss_pred eccCcccc
Confidence 99887433
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.59 E-value=1.8e-06 Score=88.97 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=124.4
Q ss_pred CCcccEEEEcCCCCC-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~-~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
..+.+.+.|-+|... ++-+.|.++|-.||.|+.|.++... -|.|.|++.+..+++.|
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHH
Confidence 345678999999865 6778899999999999999996532 37899999999999999
Q ss_pred H-HhcceeecCceeEeecCCCccccc------CC----------------------CCCCcCCCccEEEEeCCCCCCCHH
Q 008920 301 L-AFNMAVIGGNHIRLDRACPPRKKL------KG----------------------EDAPLYDIKKTVFVGNLPFDVKDE 351 (548)
Q Consensus 301 l-~lng~~~~gr~I~V~~a~~~~k~~------~~----------------------~~~~~~~~~~tLfV~NLp~~~tee 351 (548)
+ .||+..+.|.+|.|+.+...--.. .. .......+++.|+.-|.|..+||+
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred HHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 9 599999999999999876431100 00 002334578899999999999999
Q ss_pred HHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC
Q 008920 352 EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD 408 (548)
Q Consensus 352 dL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G 408 (548)
.|..+|...+. ....|+|..-+ +.++ --|.++|++.++|..||..+| ..|.+
T Consensus 422 ~l~~i~nek~v---~~~svkvFp~k-serS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 422 QLIGICNEKDV---PPTSVKVFPLK-SERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred HHHHHhhhcCC---CcceEEeeccc-cccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 99999988742 35667776554 3333 368999999999999998888 66655
No 120
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=7.5e-08 Score=95.18 Aligned_cols=97 Identities=22% Similarity=0.336 Sum_probs=82.5
Q ss_pred CceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEE
Q 008920 310 GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389 (548)
Q Consensus 310 gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F 389 (548)
.|.|.|..+..... ....++||||-|...-.|+|++.+|..| |.|..|.|.+.+ .|.++|+|||.|
T Consensus 2 nrpiqvkpadsesr---------g~~drklfvgml~kqq~e~dvrrlf~pf----G~~~e~tvlrg~-dg~sKGCAFVKf 67 (371)
T KOG0146|consen 2 NRPIQVKPADSESR---------GGDDRKLFVGMLNKQQSEDDVRRLFQPF----GNIEECTVLRGP-DGNSKGCAFVKF 67 (371)
T ss_pred CCCccccccccccC---------CccchhhhhhhhcccccHHHHHHHhccc----CCcceeEEecCC-CCCCCCceEEEe
Confidence 46777877754321 2246899999999999999999999999 999999999986 599999999999
Q ss_pred CCHHHHHHHHHHcC--CccCC--eEEEEEeeecCC
Q 008920 390 KTREAANLVIKRRN--LKLRD--RELRLSHAQQNC 420 (548)
Q Consensus 390 ~~~e~A~~Al~~ln--~~l~G--r~I~V~~Ak~~~ 420 (548)
.+..+|+.||..|+ ..|-| -.|.|.|+....
T Consensus 68 ~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 68 SSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 102 (371)
T ss_pred ccchHHHHHHHHhcccccCCCCccceEEEeccchH
Confidence 99999999999887 77877 689999997653
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=5.8e-07 Score=92.02 Aligned_cols=76 Identities=28% Similarity=0.462 Sum_probs=68.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHH-HcC-CccCCeE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIK-RRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~-~ln-~~l~Gr~ 410 (548)
...-.+|||++|...+++.+|+++|.+| |.|.+|+++.. .|+|||+|.+.++|+.|.. .++ ..|.|+.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3346899999999999999999999999 99999998866 5699999999999999974 455 8999999
Q ss_pred EEEEeeec
Q 008920 411 LRLSHAQQ 418 (548)
Q Consensus 411 I~V~~Ak~ 418 (548)
|.|.|+.+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999987
No 122
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.41 E-value=4.7e-07 Score=99.55 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=75.2
Q ss_pred CCCcCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHH
Q 008920 217 GFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (548)
Q Consensus 217 ~~~~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~ 296 (548)
.+|+.+...+.|||+||++.++++.|...|..||+|.+|+|+... ++... ....-||||.|.+..+
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR-tEeEk-------------~r~r~cgfvafmnR~D 231 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR-TEEEK-------------RRERNCGFVAFMNRAD 231 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeeccc-chhhh-------------ccccccceeeehhhhh
Confidence 455667778899999999999999999999999999999997633 22221 2255799999999999
Q ss_pred HHHHH-HhcceeecCceeEeecCC
Q 008920 297 TEAAL-AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 297 A~~Al-~lng~~~~gr~I~V~~a~ 319 (548)
|+.|+ .|+|..+.+..|.+.|+.
T Consensus 232 ~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 232 AERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred HHHHHHHhcceeeeeeeeeecccc
Confidence 99999 599999999999999983
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.39 E-value=5.5e-07 Score=99.92 Aligned_cols=75 Identities=20% Similarity=0.506 Sum_probs=69.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
.++|||||.|+..+++.||..+|..| |.|.+|.++.. +|+|||.+....+|.+||.+|. ..+.++.|+|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhc----ccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 46899999999999999999999999 99999988755 7899999999999999998887 9999999999
Q ss_pred EeeecC
Q 008920 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.||...
T Consensus 490 ~Wa~g~ 495 (894)
T KOG0132|consen 490 AWAVGK 495 (894)
T ss_pred eeeccC
Confidence 999865
No 124
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.38 E-value=3.2e-07 Score=90.39 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=115.4
Q ss_pred cEEEEcCCCCCCcHHH-H--HHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 226 RTIFVGNLPLKVKKKT-L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 226 rtVfVgNLP~~~tee~-L--~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...|++|+-..+..+- | ...|+.|-.+....+..+ ..+.-.+++|+.|........+-
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~------------------~p~~~~~~~~~~~k~s~a~~k~~~ 158 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD------------------RPQPIRPEAFESFKASDALLKAET 158 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc------------------CCCccCcccccCcchhhhhhhhcc
Confidence 3566777666655444 2 456665554433333211 12346689999999877666665
Q ss_pred HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCC
Q 008920 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~s 381 (548)
+-++..+.-..|++.....-.... .....+....||.+.|..+++++-|-..|..| -......+++|..||.+
T Consensus 159 ~~~~Kki~~~~VR~a~gtswedPs---l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf----psf~~akviRdkRTgKS 231 (290)
T KOG0226|consen 159 EKEKKKIGKPPVRLAAGTSWEDPS---LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF----PSFQKAKVIRDKRTGKS 231 (290)
T ss_pred ccccccccCcceeeccccccCCcc---cccCccccceeecccccccccHHHHHHHHHhc----cchhhcccccccccccc
Confidence 345666655666655543221110 02223456789999999999999999999999 45667889999999999
Q ss_pred ceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 382 KGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
+||+||.|.+..++..|+..|+ ..++.++|.+.-
T Consensus 232 kgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 232 KGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 9999999999999999998887 888888887653
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.38 E-value=7.2e-07 Score=95.79 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=75.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
.+.|||.+|...+-..||+.+|+.| |.|+...|+.+..+...++||||++.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKy----GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKY----GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHh----cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 5789999999999999999999999 899999999998888889999999999999999999999 99999999999
Q ss_pred eeecC
Q 008920 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
.++..
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 99864
No 126
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=2.9e-06 Score=91.00 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEe
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSH 415 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~ 415 (548)
..+|||+|||++++..+|.++|..| |.|....|..-...+...+||||+|.+.++++.||.+.-..|+|++|.|.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 3459999999999999999999999 899998877643234444899999999999999999988999999999997
Q ss_pred eecC
Q 008920 416 AQQN 419 (548)
Q Consensus 416 Ak~~ 419 (548)
-++.
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 7664
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=84.32 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=67.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~f-G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
...+||..||..+.+..|..+|.+| |.|..+++-+ +..+|.++|||||+|.+++.|.-|. .
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR-----------------nkrTGNSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR-----------------NKRTGNSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeec-----------------ccccCCcCceEEEEeccHHHHHHHHHH
Confidence 4579999999999999999999998 6777777622 1237789999999999999999888 5
Q ss_pred hcceeecCceeEeecCCC
Q 008920 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
||++.|.|+-|.|....+
T Consensus 112 MNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 112 MNNYLLMEHLLECHVMPP 129 (214)
T ss_pred hhhhhhhhheeeeEEeCc
Confidence 999999999999988643
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.30 E-value=4.4e-06 Score=81.08 Aligned_cols=90 Identities=28% Similarity=0.403 Sum_probs=69.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEee-cCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc---CCe
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR-HPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL---RDR 409 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~-d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l---~Gr 409 (548)
.-+||||.+||.++...+|+.+|..|. | .+.+.|-. +.....++.+|||+|.+...|..|+.+|| ..| .+.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~---G-YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFH---G-YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCC---C-ccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 358999999999999999999999994 3 34444432 33334566899999999999999999998 555 468
Q ss_pred EEEEEeeecCCCCCCCCCC
Q 008920 410 ELRLSHAQQNCTPSKRKDV 428 (548)
Q Consensus 410 ~I~V~~Ak~~~~~~~rr~~ 428 (548)
.|+|.+|+.+....+++..
T Consensus 109 tLhiElAKSNtK~kr~k~s 127 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGS 127 (284)
T ss_pred eeEeeehhcCcccccCCCC
Confidence 9999999987655544433
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=1.3e-06 Score=93.91 Aligned_cols=81 Identities=15% Similarity=0.340 Sum_probs=70.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...+.|||.+|...+-..+|..||++||.|.-..+++. ...|- .+.|+||++.+.++|.+||
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN----aRsPG-------------aRCYGfVTMSts~eAtkCI~ 465 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN----ARSPG-------------ARCYGFVTMSTSAEATKCIE 465 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeec----CCCCC-------------cceeEEEEecchHHHHHHHH
Confidence 35678999999999999999999999999999888543 33332 6689999999999999999
Q ss_pred HhcceeecCceeEeecCCC
Q 008920 302 AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~ 320 (548)
.||.+.|.|+.|.|..+..
T Consensus 466 hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 466 HLHRTELHGRMISVEKAKN 484 (940)
T ss_pred Hhhhhhhcceeeeeeeccc
Confidence 5999999999999999864
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.3e-06 Score=94.38 Aligned_cols=164 Identities=20% Similarity=0.197 Sum_probs=107.7
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+-..++|+|-|||..++.++|..+|+.||+|..|+.. -...|.+||+|.+..+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t----------------------~~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET----------------------PNKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc----------------------cccCceEEEEEeehHhHHHHH
Confidence 3456899999999999999999999999999997761 125689999999999999999
Q ss_pred -HhcceeecCceeEeecCCCcccccCCCC-------------CCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCe
Q 008920 302 -AFNMAVIGGNHIRLDRACPPRKKLKGED-------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~~k~~~~~~-------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I 367 (548)
+|++..|.|+.|................ .+..-+...+| +.|++..+..-+..+|.-+ |.+
T Consensus 130 k~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~----~~~ 204 (549)
T KOG4660|consen 130 KALNRREIAGKRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVD----GSS 204 (549)
T ss_pred HHHHHHHhhhhhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhcc----Ccc
Confidence 6999999998887222211100000000 11111122333 3488887776666666666 555
Q ss_pred EEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeec
Q 008920 368 EAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQ 418 (548)
Q Consensus 368 ~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~ 418 (548)
.. + .++.-.-.-||.|.+..++..++..++..+.+....+.++.+
T Consensus 205 ~~-~-----~~~~~~hq~~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 205 PG-R-----ETPLLNHQRFVEFADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred cc-c-----cccchhhhhhhhhccccchhhcccCCceecCCCCceEEecCC
Confidence 43 2 222222356788888888855555344666666666666655
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.24 E-value=2.5e-06 Score=93.68 Aligned_cols=172 Identities=12% Similarity=0.040 Sum_probs=125.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
.+-|-+.++++++...++++||...- |.++.|.. +.-.+...|.+||.|....++++|+..|
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~-----------------~~v~~~~tG~~~v~f~~~~~~q~A~~rn 372 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSE-----------------NRVAPPQTGRKTVMFTPQAPFQNAFTRN 372 (944)
T ss_pred hheeeecccccccccchhhhhcCccc-ccccchhh-----------------hhcCCCcCCceEEEecCcchHHHHHhcC
Confidence 35677789999999999999987422 22333311 1111224789999999999999999989
Q ss_pred ceeecCceeEeecCCCcccccCC--------------C--------------C--CCcCCCccEEEEeCCCCCCCHHHHH
Q 008920 305 MAVIGGNHIRLDRACPPRKKLKG--------------E--------------D--APLYDIKKTVFVGNLPFDVKDEEIY 354 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~~k~~~~--------------~--------------~--~~~~~~~~tLfV~NLp~~~teedL~ 354 (548)
.+.+-.|.|.|..+......... . . ........+|||..||+.+++.++.
T Consensus 373 ~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v 452 (944)
T KOG4307|consen 373 PSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPV 452 (944)
T ss_pred chhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchh
Confidence 99888999888776422110000 0 0 0112346799999999999999999
Q ss_pred HHHhccCCCCCCeEE-EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 355 QLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 355 ~~F~~~g~~~G~I~~-VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
.+|... -.|++ |.|.+.+ ++..++.|||.|...+++..|+.... +.++.|.|+|.-....
T Consensus 453 ~~f~~~----~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 453 NKFMGA----AAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hhhhhh----hhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 999876 46766 5555554 68889999999999999988876666 7888899999876544
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.21 E-value=3.5e-06 Score=84.13 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=69.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
-..+|+|.|||+.++.++|.+||..||.+..+-|..++ .|.+.|.|-|.|...++|..|+ .
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~------------------~G~s~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR------------------AGRSLGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC------------------CCCCCccceeeecchHhHHHHHHH
Confidence 34789999999999999999999999988777774433 4567899999999999999999 5
Q ss_pred hcceeecCceeEeecCCCc
Q 008920 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
+|+..+.|+.|.+.....+
T Consensus 144 ~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 144 YNGVALDGRPMKIEIISSP 162 (243)
T ss_pred hcCcccCCceeeeEEecCc
Confidence 9999999999999887643
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.20 E-value=4.3e-06 Score=83.52 Aligned_cols=79 Identities=27% Similarity=0.414 Sum_probs=73.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
...|+|.|||+.++++||.++|..| |.+..+-|.++ ..|.+.|.|-|.|...++|..|++.++ ..|.|+.|.+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 4789999999999999999999999 88999999999 479999999999999999999999988 99999999999
Q ss_pred eeecC
Q 008920 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
...+.
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 88765
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.13 E-value=4.9e-06 Score=89.27 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
.....+|||+|||++++..+|.++|..||.|....|..... .+..-+||||+|.+..+++.||
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~-----------------~~~~~~fgFV~f~~~~~~~~~i 347 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP-----------------GGKNPCFGFVEFENAAAVQNAI 347 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc-----------------CCCcCceEEEEEeecchhhhhh
Confidence 34556799999999999999999999999999888844221 1123389999999999999999
Q ss_pred HhcceeecCceeEeecCC
Q 008920 302 AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~ 319 (548)
.-+-..++++.|.|..-.
T Consensus 348 ~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 348 EASPLEIGGRKLNVEEKR 365 (419)
T ss_pred hcCccccCCeeEEEEecc
Confidence 888888999999998743
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.13 E-value=2.8e-06 Score=84.74 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=70.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
-+.+.|||+|+.+.+|.++|..+|+.||.|..|.|..+.+ .++++|||||+|.+.+.++.||.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~-----------------~~~~k~~~yvef~~~~~~~~ay~ 161 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF-----------------RGHPKGFAYVEFSSYELVEEAYK 161 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeecccc-----------------CCCcceeEEEecccHhhhHHHhh
Confidence 3457899999999999999999999999999888855442 34477999999999999999999
Q ss_pred hcceeecCceeEeecCC
Q 008920 303 FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~ 319 (548)
|++..|.|+.|.|.+..
T Consensus 162 l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 162 LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cCCcccccccceeeeee
Confidence 99999999999998864
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.08 E-value=1e-05 Score=80.79 Aligned_cols=83 Identities=23% Similarity=0.246 Sum_probs=76.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
......|||+|+.+.++.+.+..+|..| |.|..|.|+.|..++.++||+||+|.+.+.+..|+.+.+..|.|+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~C----g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESC----GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeecc----CCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccce
Confidence 3456789999999999999999999999 899999999999999999999999999999999999555999999999
Q ss_pred EEeeecC
Q 008920 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.+..-+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9998866
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.06 E-value=2.5e-05 Score=67.52 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=68.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC----CeEE
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR----DREL 411 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~----Gr~I 411 (548)
+||.|+|+|...+.++|.+++.... .|..-.+.++.|..++-+.|||||.|.+++.|.......+ ..+. .+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 6899999999999999999997653 3888889999999999999999999999999999987766 4433 3677
Q ss_pred EEEeeec
Q 008920 412 RLSHAQQ 418 (548)
Q Consensus 412 ~V~~Ak~ 418 (548)
.|.||.-
T Consensus 80 ~i~yAri 86 (97)
T PF04059_consen 80 EISYARI 86 (97)
T ss_pred EEehhHh
Confidence 8888864
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.00 E-value=1.3e-06 Score=91.21 Aligned_cols=151 Identities=17% Similarity=0.269 Sum_probs=118.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hcc
Q 008920 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-lng 305 (548)
.+|++||...++..+|..+|...-.-.+-.| +. ..|||||.+.+..+|.+|++ ++|
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~f----------------l~-------k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQF----------------LV-------KSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcce----------------ee-------ecceeeccCCchhhhhhhHHhhch
Confidence 5899999999999999999985421111111 11 45899999999999999995 665
Q ss_pred e-eecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEe-ecCCCCCCce
Q 008920 306 A-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVI-RHPHMRVGKG 383 (548)
Q Consensus 306 ~-~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~-~d~~tg~srG 383 (548)
. .+.|..+.|....+. ....+.+-|+|+|....|+.|..++..| |.|+.|.++ .+..+ -
T Consensus 60 k~elqGkr~e~~~sv~k-----------kqrsrk~Qirnippql~wevld~Ll~qy----g~ve~~eqvnt~~et----a 120 (584)
T KOG2193|consen 60 KVELQGKRQEVEHSVPK-----------KQRSRKIQIRNIPPQLQWEVLDSLLAQY----GTVENCEQVNTDSET----A 120 (584)
T ss_pred hhhhcCceeeccchhhH-----------HHHhhhhhHhcCCHHHHHHHHHHHHhcc----CCHhHhhhhccchHH----H
Confidence 4 688999999887653 2345679999999999999999999999 899998654 34332 2
Q ss_pred EEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008920 384 IAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
..-|+|...+.+..||..++ ..|....+.|.|-...
T Consensus 121 vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 121 VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 34578999999999999888 9999999999997543
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.98 E-value=1.8e-05 Score=81.25 Aligned_cols=79 Identities=27% Similarity=0.408 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeE--------EEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~--------~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
...|||.|||.++|.+++.++|+.| |.|. .|.|.++. .|..+|=|.+.|...+++..||..|+ ..|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKc----GiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKC----GIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhc----ceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 4569999999999999999999999 5553 27788884 59999999999999999999999999 999
Q ss_pred CCeEEEEEeeecC
Q 008920 407 RDRELRLSHAQQN 419 (548)
Q Consensus 407 ~Gr~I~V~~Ak~~ 419 (548)
.|+.|+|..|+-.
T Consensus 209 rg~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ 221 (382)
T ss_pred cCcEEEEehhhhh
Confidence 9999999999754
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.76 E-value=0.00011 Score=61.39 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=47.0
Q ss_pred cEEEEeCCCCCCCHH----HHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 337 KTVFVGNLPFDVKDE----EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 337 ~tLfV~NLp~~~tee----dL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..|||.|||.+.+.. -|++++..|| |.|..|. .|.|+|.|.+.+.|..|++.|. ..+.|+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG---GkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG---GKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT-----EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC---CEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 469999999998865 5667777887 8888772 3689999999999999997776 99999999
Q ss_pred EEEeeec
Q 008920 412 RLSHAQQ 418 (548)
Q Consensus 412 ~V~~Ak~ 418 (548)
.|.|...
T Consensus 70 ~v~~~~~ 76 (90)
T PF11608_consen 70 SVSFSPK 76 (90)
T ss_dssp EEESS--
T ss_pred EEEEcCC
Confidence 9999853
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.73 E-value=5.3e-05 Score=83.84 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecC---CCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~---~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
.+..|||+||+..++++.|...|+.| |.|.+|.|+.-+ .....+.+|||.|-+..+|++|+..|+ ..+.+..
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred cccceeeecCCccccHHHHHHHhccc----CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 46789999999999999999999999 899999988654 345667799999999999999998888 9999999
Q ss_pred EEEEeeecC
Q 008920 411 LRLSHAQQN 419 (548)
Q Consensus 411 I~V~~Ak~~ 419 (548)
|++.|++..
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 999999765
No 142
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=4e-05 Score=75.25 Aligned_cols=71 Identities=20% Similarity=0.476 Sum_probs=63.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
..|||++||+.+.+.+|..||..| |.|..|.+. .||+||+|.+.-+|..|+..++ ..|+|-.+.|.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~y----g~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGY----GKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred CceeecccCCccchhHHHHHHhhc----cccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 358999999999999999999999 889888764 4599999999999999998887 888887799999
Q ss_pred eecC
Q 008920 416 AQQN 419 (548)
Q Consensus 416 Ak~~ 419 (548)
+...
T Consensus 70 ~r~~ 73 (216)
T KOG0106|consen 70 ARGK 73 (216)
T ss_pred cccc
Confidence 8854
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.69 E-value=1.8e-05 Score=76.68 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=69.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
.+..++|||+||-..++++-|.++|-+- |.|..|.|+.+. .+..+ ||||.|.+.....-|++++| ..|.++.|
T Consensus 6 ae~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchh
Confidence 3456899999999999999999999998 899999988875 45666 99999999999999999998 99999888
Q ss_pred EEEeee
Q 008920 412 RLSHAQ 417 (548)
Q Consensus 412 ~V~~Ak 417 (548)
.|.+-.
T Consensus 80 q~~~r~ 85 (267)
T KOG4454|consen 80 QRTLRC 85 (267)
T ss_pred hccccc
Confidence 887754
No 144
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=4.6e-06 Score=93.83 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=123.2
Q ss_pred cEEEEcCCCCCCcHH-HHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008920 226 RTIFVGNLPLKVKKK-TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee-~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
+...+.|+.+..... .+...|..+|.|+.|++.-.. . +-| ...++|+++....+++.|....
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g-----~---------k~h---~q~~~~~~~s~~~~~esat~pa 634 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRG-----F---------KAH---EQPQQQKVQSKHGSAESATVPA 634 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCcccc-----c---------ccc---ccchhhhhhccccchhhccccc
Confidence 346677777776655 567889999999999872210 0 001 2228999999999999999988
Q ss_pred ceeecCceeEeecCCCcccccCCCCC-CcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008920 305 MAVIGGNHIRLDRACPPRKKLKGEDA-PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~~k~~~~~~~-~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
+..+.++.+.|..+.+.......... .......++||+||+..+.+.+|...|..+ |.+..|+|......+..+|
T Consensus 635 ~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~~~rG 710 (881)
T KOG0128|consen 635 GGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEKRFRG 710 (881)
T ss_pred ccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhcccccc
Confidence 99999999999988765422111111 112235689999999999999999999999 7888887776667899999
Q ss_pred EEEEEECCHHHHHHHHHHcCCccCC
Q 008920 384 IAYVLFKTREAANLVIKRRNLKLRD 408 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln~~l~G 408 (548)
+|||.|...+.+.+||......+.|
T Consensus 711 ~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 711 KAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred ceeeEeecCCchhhhhhhhhhhhhh
Confidence 9999999999999999988755555
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=5.7e-05 Score=81.89 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=63.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|+|-|||..+++++|..+|+.| |+|..|+. +-..+|.+||+|.|.-+|+.|++.++ ..|.|+.|
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 4567999999999999999999999999 89988764 44458999999999999999999999 99999887
Q ss_pred E
Q 008920 412 R 412 (548)
Q Consensus 412 ~ 412 (548)
.
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 7
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.52 E-value=0.00011 Score=72.73 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=66.6
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
+...||+|.|..+++.+.|...|.+|-.....+++++. .+|+++||+||.|.+..++..|+ +
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk-----------------RTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK-----------------RTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccc-----------------cccccccceeeeecCHHHHHHHHHh
Confidence 34689999999999999999999999766555553332 46789999999999999999999 7
Q ss_pred hcceeecCceeEeecCC
Q 008920 303 FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~ 319 (548)
|+|..++.+.|.+..+.
T Consensus 252 m~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSE 268 (290)
T ss_pred hcccccccchhHhhhhh
Confidence 99999999988876653
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.50 E-value=0.00067 Score=58.73 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=56.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhc--CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~f--G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
+||.|+|||...|.++|.+++... |...-+-|+.| +.++.+.|||||.|.+++.|.... .
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD-----------------f~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID-----------------FKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee-----------------ccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 799999999999999999998863 44333444322 334568899999999999999887 5
Q ss_pred hcceeecC----ceeEeecC
Q 008920 303 FNMAVIGG----NHIRLDRA 318 (548)
Q Consensus 303 lng~~~~g----r~I~V~~a 318 (548)
++|..+.. ....|.+|
T Consensus 65 f~g~~w~~~~s~Kvc~i~yA 84 (97)
T PF04059_consen 65 FNGKKWPNFNSKKVCEISYA 84 (97)
T ss_pred HcCCccccCCCCcEEEEehh
Confidence 88887743 34555555
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.49 E-value=0.00039 Score=58.13 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCCcHHHHH----HHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008920 226 RTIFVGNLPLKVKKKTLI----KEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~----~~Fs~fG-~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
..|||.|||.+.+...|. +++..|| .|.+| +.+.|+|.|.+.+.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------------------------~~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------------------------SGGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------------------------eCCEEEEEeCCHHHHHHH
Confidence 469999999998876655 5666786 45443 237899999999999999
Q ss_pred H-HhcceeecCceeEeecCC
Q 008920 301 L-AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 301 l-~lng~~~~gr~I~V~~a~ 319 (548)
+ .|+|..+.|+.|.|.+..
T Consensus 56 ~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHTT--SSSS--EEESS-
T ss_pred HHhhcccccccceEEEEEcC
Confidence 9 599999999999999974
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.17 E-value=0.001 Score=58.46 Aligned_cols=68 Identities=28% Similarity=0.349 Sum_probs=43.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC------CccCCeE
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN------LKLRDRE 410 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln------~~l~Gr~ 410 (548)
..|+|.+++..++.++|+++|..| |.|..|.+.... ..|||.|.+.+.|+.|+..+. ..|.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~ 71 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKE 71 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCce
Confidence 468999999999999999999999 899999887652 389999999999999987654 4566655
Q ss_pred EEEE
Q 008920 411 LRLS 414 (548)
Q Consensus 411 I~V~ 414 (548)
+.+.
T Consensus 72 ~~~~ 75 (105)
T PF08777_consen 72 VTLE 75 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 150
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.05 E-value=0.0006 Score=72.00 Aligned_cols=82 Identities=28% Similarity=0.320 Sum_probs=62.1
Q ss_pred CCCCcCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeee---cccCCCCCccchhhhhhhccCCCcceEEEEec
Q 008920 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV---PIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (548)
Q Consensus 216 e~~~~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~---~~~~~~~prkga~~~~~~~~g~skG~AFV~F~ 292 (548)
..+++++-..+||.+-|||.+-.-+-|.++|..||.|.+|+|+.. +....+.|+ .+..-..+-||||+|.
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~-------~~~~~~tk~~AlvEye 294 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPK-------KYFELQTKECALVEYE 294 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCc-------cchhhhhhhhhhhhhh
Confidence 345566678899999999999999999999999999999999653 222222222 1222234678999999
Q ss_pred CHHHHHHHHHhc
Q 008920 293 SEQSTEAALAFN 304 (548)
Q Consensus 293 s~e~A~~Al~ln 304 (548)
..+.|.+|.++.
T Consensus 295 ~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 295 EVEAARKARELL 306 (484)
T ss_pred hhHHHHHHHHhh
Confidence 999999999754
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.05 E-value=0.00039 Score=71.62 Aligned_cols=80 Identities=33% Similarity=0.515 Sum_probs=67.1
Q ss_pred ccEEE-EcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008920 225 LRTIF-VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 225 ~rtVf-VgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..++| |+||++.++.++|..+|..+|.|..|+++.++ . .+...|||||.|.....+..++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~--~---------------s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE--E---------------SGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC--C---------------ccchhhhhhhhhhhchhHHHHhhc
Confidence 34566 99999999999999999999999999985543 1 345779999999999999998854
Q ss_pred cceeecCceeEeecCCCc
Q 008920 304 NMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~ 321 (548)
+...+.++++.|....+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccCcccCcccccccCCCC
Confidence 778889999999987643
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.89 E-value=0.0011 Score=67.97 Aligned_cols=113 Identities=12% Similarity=0.296 Sum_probs=74.4
Q ss_pred cEEEEcCCCCCCcHHHH------HHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcce--EEEEecCHHHH
Q 008920 226 RTIFVGNLPLKVKKKTL------IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH--AYIVFKSEQST 297 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L------~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~--AFV~F~s~e~A 297 (548)
.-|||-+||+.+..+++ .++|.+||.|..|.+-. -+ +- .+ ...+. .||.|.+.++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk--kt----~s--------~n--st~~h~gvYITy~~kedA 178 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK--KT----SS--------LN--STASHAGVYITYSTKEDA 178 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc--cc----cc--------cc--cccccceEEEEecchHHH
Confidence 46999999998876662 27999999998887711 11 10 01 11223 39999999999
Q ss_pred HHHH-HhcceeecCceeEeecCCCccc--ccCCCCCCcCCCccEEEEeCCCC---CCCHHHHHHHH
Q 008920 298 EAAL-AFNMAVIGGNHIRLDRACPPRK--KLKGEDAPLYDIKKTVFVGNLPF---DVKDEEIYQLF 357 (548)
Q Consensus 298 ~~Al-~lng~~~~gr~I~V~~a~~~~k--~~~~~~~~~~~~~~tLfV~NLp~---~~teedL~~~F 357 (548)
..|| +.+|..++|+.|...+.....= -.. ....++..|+|+.--.. ..+.++|...-
T Consensus 179 arcIa~vDgs~~DGr~lkatYGTTKYCtsYLR---n~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 179 ARCIAEVDGSLLDGRVLKATYGTTKYCTSYLR---NAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred HHHHHHhccccccCceEeeecCchHHHHHHHc---CCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 9999 6899999999999988643200 000 12234556777754333 24677776544
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.89 E-value=0.00077 Score=69.96 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=73.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeE--------EEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN- 403 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~--------~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln- 403 (548)
.....+|||-+||..+++.+|.++|.++ |.|. .|.|.+|.+|+.++|-|.|.|.+...|+.||.-++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 3345789999999999999999999999 5552 36788899999999999999999999999999888
Q ss_pred CccCCeEEEEEeeecC
Q 008920 404 LKLRDRELRLSHAQQN 419 (548)
Q Consensus 404 ~~l~Gr~I~V~~Ak~~ 419 (548)
..|.|..|.|..|...
T Consensus 139 kdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 139 KDFCGNTIKVSLAERR 154 (351)
T ss_pred ccccCCCchhhhhhhc
Confidence 9999999999998765
No 154
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.88 E-value=0.0016 Score=67.13 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=68.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
...++||+||-|.+|++||.+.+...|. ..+.++.+..++.+|.++|||+|...+..+....++.|. ..|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~--~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGL--AQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhH--HHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3578999999999999999999987742 367788888898999999999999999999999999998 8999975555
Q ss_pred Eee
Q 008920 414 SHA 416 (548)
Q Consensus 414 ~~A 416 (548)
.-+
T Consensus 157 ~~~ 159 (498)
T KOG4849|consen 157 LSY 159 (498)
T ss_pred ecc
Confidence 443
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.86 E-value=0.003 Score=55.50 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=35.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
+.|+|.+++..++.++|+.+|+.||.|..|.+.. ....|||.|.+++.|+.|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-----------------------G~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-----------------------GDTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-----------------------T-SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-----------------------CCCEEEEEECCcchHHHHHH
Confidence 4789999999999999999999999998888721 22479999999999999994
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.79 E-value=0.0027 Score=48.79 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=42.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+.|-|.+.|.+..+ .|..+|..||+|..+.+.. ..-+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~-----------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE-----------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC-----------------------CCcEEEEEECCHHHHHhhC
Confidence 57889999988775 4556999999999988720 2358999999999999986
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.72 E-value=0.007 Score=52.76 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=51.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEE-EeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVr-i~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
.+.|.|=+.|.. ....|..+|++||.|.... +......-...| ......+..|.|.++.+|.+||..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~-----------~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYP-----------IPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG---------------------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccccccccccc-----------CCCCCCEEEEECCCHHHHHHHHHh
Confidence 356888899988 4568889999999997664 100000000000 012446899999999999999999
Q ss_pred cceeecCceeE-eecC
Q 008920 304 NMAVIGGNHIR-LDRA 318 (548)
Q Consensus 304 ng~~~~gr~I~-V~~a 318 (548)
||..|.|..|. |.++
T Consensus 74 NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp TTEEETTCEEEEEEE-
T ss_pred CCeEEcCcEEEEEEEc
Confidence 99999987544 5554
No 158
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.68 E-value=0.0041 Score=69.17 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=63.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
+.|-+.|+|++++-+||.+||..|-. ..-+|++-++ +.|...|-|.|.|++.++|..|...++ ..|..|.|.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~---~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEP---DPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhccccc---CCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 47889999999999999999999931 2234555555 789999999999999999999988887 999999998764
No 159
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=96.60 E-value=0.0023 Score=55.08 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=40.2
Q ss_pred ccccccCccCCCCCCCCchhhHhhhccCCCCCchhhhhhhhcCCc
Q 008920 107 TKLIYPRSILGFEPNGTIENEIKKEHSSNVGSESYLNRQKQNSNF 151 (548)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~k~~~~~ 151 (548)
.+||.|+|||+|.+|.+|+.+++++.. ++|+++|++.-..+.+.
T Consensus 10 l~LF~PRPPL~y~pP~d~~p~~r~t~~-itGvs~~l~~~~~~~~~ 53 (94)
T PF12220_consen 10 LALFAPRPPLPYLPPIDYPPEKRKTPP-ITGVSQYLSEFEDYKDE 53 (94)
T ss_pred HHHcCCCCCCCCCCccccCcccccCCC-CCcHHHHHHHHhccccC
Confidence 579999999999999999999998888 99999999998888753
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.59 E-value=0.0026 Score=66.09 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=70.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...-+|||-+||..+++.+|..+|.+||.|.. ...+..|+. .+-++..++..+|-|.|.|.+...|+.|+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-------nK~t~kPki--~~y~dkeT~~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKR-------NKRTGKPKI--KIYTDKETGAPKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceecc-------CCCCCCcch--hccccccccCcCCceeeeecChhhhhhhhh
Confidence 34568999999999999999999999997632 112223331 122345778899999999999999999996
Q ss_pred -hcceeecCceeEeecCCC
Q 008920 303 -FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~ 320 (548)
+++..|.+..|.|.++..
T Consensus 135 ~~agkdf~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 135 WFAGKDFCGNTIKVSLAER 153 (351)
T ss_pred hhccccccCCCchhhhhhh
Confidence 899999999999988764
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.26 E-value=0.0038 Score=62.20 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=58.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..-.||+++||+.+...-|+++|+.||.|-.|.|-.. ..+. + .+-.....+.+..-.-|.|+|.+...|..+. .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE--~~s~--~-~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE--DDSK--R-AARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecch--hhHH--H-HHHhhcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999988221 1110 0 0000000111222234789999999999877 5
Q ss_pred hcceeecCce
Q 008920 303 FNMAVIGGNH 312 (548)
Q Consensus 303 lng~~~~gr~ 312 (548)
||+..|+|+.
T Consensus 148 Lnn~~Iggkk 157 (278)
T KOG3152|consen 148 LNNTPIGGKK 157 (278)
T ss_pred hCCCccCCCC
Confidence 8999999874
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.24 E-value=0.0088 Score=59.69 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=83.8
Q ss_pred HHHHH-HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeec
Q 008920 297 TEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (548)
Q Consensus 297 A~~Al-~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d 375 (548)
|..|- +|++....|+.|+|.++.. ..|||.||...+.-+.|.+-|..| |.|....++.|
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~f----g~~e~av~~vD 66 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRRF----GPIERAVAKVD 66 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhhc----Cccchheeeec
Confidence 44444 5899999999999999852 679999999999999999999999 89988777777
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHHcC-----CccCCeEEEEEeeecC
Q 008920 376 PHMRVGKGIAYVLFKTREAANLVIKRRN-----LKLRDRELRLSHAQQN 419 (548)
Q Consensus 376 ~~tg~srG~AFV~F~~~e~A~~Al~~ln-----~~l~Gr~I~V~~Ak~~ 419 (548)
+.+.+.+-++|.|...-.|..|+.... ....+++.-|..+...
T Consensus 67 -~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~ 114 (275)
T KOG0115|consen 67 -DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQP 114 (275)
T ss_pred -ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhcc
Confidence 568889999999999999998887663 5556677777766543
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.76 E-value=0.12 Score=55.16 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=56.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeec---CCC--CCC--------ceEEEEEECCHHHHHHHHH
Q 008920 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH---PHM--RVG--------KGIAYVLFKTREAANLVIK 400 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d---~~t--g~s--------rG~AFV~F~~~e~A~~Al~ 400 (548)
.+.++|.+-|||.+-.-+-|..+|+.+ |.|..|+|+.- +.+ +.. +-+|+|+|...+.|.+|.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 368999999999999999999999999 99999999876 322 222 3468999999999999999
Q ss_pred HcC
Q 008920 401 RRN 403 (548)
Q Consensus 401 ~ln 403 (548)
.++
T Consensus 305 ~~~ 307 (484)
T KOG1855|consen 305 LLN 307 (484)
T ss_pred hhc
Confidence 986
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.65 E-value=0.027 Score=43.21 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=41.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHH
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVI 399 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al 399 (548)
+.|-|.+.+....+ .|..+|..| |.|..+.+... ..+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~f----GeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASF----GEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhc----CCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 46888888876664 455688899 99999887622 348999999999999985
No 165
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.034 Score=60.47 Aligned_cols=63 Identities=27% Similarity=0.355 Sum_probs=52.5
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs-~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...+|||||+||--++.++|..+|. -||-|..+-|-+|+ +-+- .+|-|=|.|.+..+-.+||
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~--k~KY---------------PkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP--KLKY---------------PKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc--ccCC---------------CCCcceeeecccHHHHHHH
Confidence 3568999999999999999999999 69999999994443 1223 4488999999999999998
Q ss_pred H
Q 008920 302 A 302 (548)
Q Consensus 302 ~ 302 (548)
.
T Consensus 431 s 431 (520)
T KOG0129|consen 431 S 431 (520)
T ss_pred h
Confidence 5
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.021 Score=62.45 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=58.1
Q ss_pred cccEEEEcCCCCCC------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHH
Q 008920 224 LLRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (548)
Q Consensus 224 ~~rtVfVgNLP~~~------tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A 297 (548)
....|+|.|+|.-- -...|.++|+.+|+|..+.++-+. .|...||.|++|.+..+|
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e------------------~ggtkG~lf~E~~~~~~A 118 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE------------------EGGTKGYLFVEYASMRDA 118 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc------------------cCCeeeEEEEEecChhhH
Confidence 34689999999632 234566899999999888874322 334789999999999999
Q ss_pred HHHH-HhcceeecCc-eeEeecC
Q 008920 298 EAAL-AFNMAVIGGN-HIRLDRA 318 (548)
Q Consensus 298 ~~Al-~lng~~~~gr-~I~V~~a 318 (548)
+.|+ .|||..|+-. .+.|...
T Consensus 119 ~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 119 KKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHHhcccceecccceEEeehh
Confidence 9999 5999988654 5555543
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.57 E-value=0.033 Score=51.61 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=51.6
Q ss_pred cEEEEcCCC-----CCCcH----HHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHH
Q 008920 226 RTIFVGNLP-----LKVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (548)
Q Consensus 226 rtVfVgNLP-----~~~te----e~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~ 296 (548)
-||.|.=+. ...-. .+|.+.|..||.|.-||+. -+.-+|+|.+.++
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-------------------------~~~mwVTF~dg~s 82 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-------------------------GDTMWVTFRDGQS 82 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-------------------------TTCEEEEESSCHH
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-------------------------CCeEEEEECccHH
Confidence 577776555 11222 3677889999999888872 1578999999999
Q ss_pred HHHHHHhcceeecCceeEeecCCC
Q 008920 297 TEAALAFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 297 A~~Al~lng~~~~gr~I~V~~a~~ 320 (548)
|.+|+.++|..+.|+.|.|..-.+
T Consensus 83 ALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 83 ALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHccCCcEECCEEEEEEeCCc
Confidence 999999999999999999988654
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.33 E-value=0.021 Score=65.48 Aligned_cols=75 Identities=31% Similarity=0.442 Sum_probs=64.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..+.+||++|+.++....|...|..||.|..|.+.. ..-||||+|.+...++.|+ .
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----------------------gq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----------------------GQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----------------------CCcceeeecccCccchhhHHH
Confidence 456799999999999999999999999999887721 3469999999999999999 5
Q ss_pred hcceeecC--ceeEeecCCCc
Q 008920 303 FNMAVIGG--NHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~g--r~I~V~~a~~~ 321 (548)
|-|..|+| +.|.|+++..+
T Consensus 511 ~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HhcCcCCCCCcccccccccCC
Confidence 88888876 67999998764
No 169
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.20 E-value=0.026 Score=59.39 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=65.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCC---CCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEE
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRL 413 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~---tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V 413 (548)
..|.|.||.+.++.++++.+|... |.|..++|+.... -....-.|||.|.+...+..|..+.|..|-|+.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEE
Confidence 479999999999999999999998 8999999876432 234455899999999999999999998888887777
Q ss_pred Eeeec
Q 008920 414 SHAQQ 418 (548)
Q Consensus 414 ~~Ak~ 418 (548)
-.+-.
T Consensus 84 ~p~~~ 88 (479)
T KOG4676|consen 84 RPYGD 88 (479)
T ss_pred EecCC
Confidence 65543
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.13 E-value=0.055 Score=55.95 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=61.5
Q ss_pred CccEEEEeCCCCCCCHHHH------HHHHhccCCCCCCeEEEEEeecCCC-CCCce-E-EEEEECCHHHHHHHHHHcC-C
Q 008920 335 IKKTVFVGNLPFDVKDEEI------YQLFCGLNDLESSVEAVRVIRHPHM-RVGKG-I-AYVLFKTREAANLVIKRRN-L 404 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL------~~~F~~~g~~~G~I~~VrI~~d~~t-g~srG-~-AFV~F~~~e~A~~Al~~ln-~ 404 (548)
..+-|||-+||..+..+++ .++|++| |.|..|.|-+...+ ....+ + .||+|.+.++|..||...+ .
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQy----GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQY----GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhc----cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 4577999999998876662 4789999 89988866543211 11112 2 3999999999999998877 9
Q ss_pred ccCCeEEEEEeeecC
Q 008920 405 KLRDRELRLSHAQQN 419 (548)
Q Consensus 405 ~l~Gr~I~V~~Ak~~ 419 (548)
.++||.|+..|...+
T Consensus 189 ~~DGr~lkatYGTTK 203 (480)
T COG5175 189 LLDGRVLKATYGTTK 203 (480)
T ss_pred cccCceEeeecCchH
Confidence 999999999998643
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.07 E-value=0.022 Score=59.02 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=58.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCC--eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGE--IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~--I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
.-.+|||||-|.+|+++|.+.+...|- |..+.+ +. +...|+++|||+|...+..++.+.|+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKF----FE-------------NR~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKF----FE-------------NRTNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhh----hh-------------cccCCcccceEEEEecchHHHHHHHH
Confidence 357999999999999999999988772 333443 11 12357899999999999999888886
Q ss_pred -hcceeecCceeEeecC
Q 008920 303 -FNMAVIGGNHIRLDRA 318 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a 318 (548)
|....|.|..-.|..+
T Consensus 143 iLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTVLSY 159 (498)
T ss_pred hcccceecCCCCeeecc
Confidence 6777888876666544
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.076 Score=58.31 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=60.5
Q ss_pred ccEEEEeCCCCCCC------HHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc-C
Q 008920 336 KKTVFVGNLPFDVK------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL-R 407 (548)
Q Consensus 336 ~~tLfV~NLp~~~t------eedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l-~ 407 (548)
..+|+|.|+|---. ..-|..+|+.+ |.|..+.++.+..+| ++||.|++|.+..+|..|++.+| ..| .
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~----gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKA----GKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhh----ccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 46889999987432 23566788999 899999999997655 99999999999999999999887 444 4
Q ss_pred CeEEEEEeee
Q 008920 408 DRELRLSHAQ 417 (548)
Q Consensus 408 Gr~I~V~~Ak 417 (548)
.+++.|..-.
T Consensus 133 nHtf~v~~f~ 142 (698)
T KOG2314|consen 133 NHTFFVRLFK 142 (698)
T ss_pred cceEEeehhh
Confidence 5777776443
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.94 E-value=0.094 Score=57.92 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=63.0
Q ss_pred CcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC--C--cc
Q 008920 331 PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN--L--KL 406 (548)
Q Consensus 331 ~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln--~--~l 406 (548)
.....++.|||.||=.-+|.-+|+.++..-| |.|+.. ++|. -+..|||.|.+.++|...+.+|+ . .-
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtg---g~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTG---GNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhcc---CchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 3455688999999999999999999999664 677666 4453 25689999999999999998876 2 22
Q ss_pred CCeEEEEEeeecC
Q 008920 407 RDRELRLSHAQQN 419 (548)
Q Consensus 407 ~Gr~I~V~~Ak~~ 419 (548)
+++.|.|.|+...
T Consensus 510 NPK~L~adf~~~d 522 (718)
T KOG2416|consen 510 NPKHLIADFVRAD 522 (718)
T ss_pred CCceeEeeecchh
Confidence 4588999998654
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.68 E-value=0.021 Score=57.00 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=57.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC--------CCCceE----EEEEECCHHHHHHHHHHcC
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM--------RVGKGI----AYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t--------g~srG~----AFV~F~~~e~A~~Al~~ln 403 (548)
...||+++||+.+...-|+++|+.| |.|-.|.|-....+ |...++ |.|+|.+...|..+...||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999 88888887765444 223332 7899999999999988888
Q ss_pred -CccCCeE
Q 008920 404 -LKLRDRE 410 (548)
Q Consensus 404 -~~l~Gr~ 410 (548)
..|+|+.
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 8888854
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.62 E-value=0.12 Score=45.12 Aligned_cols=78 Identities=10% Similarity=0.175 Sum_probs=51.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEE-EeecC------CCCCCceEEEEEECCHHHHHHHHHHcCCccCC
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHP------HMRVGKGIAYVLFKTREAANLVIKRRNLKLRD 408 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~Vr-I~~d~------~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~G 408 (548)
...|.|-+.|.. .-..|.++|+.| |.|.... +.++. .......+-.|+|.++.+|.+||..++..|.|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 456888888887 566788899999 8887774 11100 01123458999999999999999999988888
Q ss_pred e-EEEEEeeec
Q 008920 409 R-ELRLSHAQQ 418 (548)
Q Consensus 409 r-~I~V~~Ak~ 418 (548)
. .+-|.|+.+
T Consensus 81 ~~mvGV~~~~~ 91 (100)
T PF05172_consen 81 SLMVGVKPCDP 91 (100)
T ss_dssp CEEEEEEE-HH
T ss_pred cEEEEEEEcHH
Confidence 5 555777743
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.58 E-value=0.016 Score=57.91 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=48.1
Q ss_pred HHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-HhcceeecCceeEeec
Q 008920 240 KTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (548)
Q Consensus 240 e~L~~~Fs-~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V~~ 317 (548)
++|...|+ +||+|+.+.+...- ...-.|.+||.|...++|++|+ .||+..|.|++|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl------------------~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL------------------GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc------------------chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 45555556 89999998763211 1125689999999999999999 5999999999999888
Q ss_pred C
Q 008920 318 A 318 (548)
Q Consensus 318 a 318 (548)
+
T Consensus 145 ~ 145 (260)
T KOG2202|consen 145 S 145 (260)
T ss_pred c
Confidence 6
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.45 E-value=0.092 Score=53.46 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=50.9
Q ss_pred HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-HhcceeecCceeEeec
Q 008920 239 KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (548)
Q Consensus 239 ee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V~~ 317 (548)
++++..-+.+||.|..|.|..++ ..|-. -..-.||+|...++|.+|+ .|||..|+|+.+..++
T Consensus 300 ede~keEceKyg~V~~viifeip----~~p~d------------eavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIP----SQPED------------EAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecC----CCccc------------hhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 34667788999999999886554 22221 2235799999999999998 7999999999998877
Q ss_pred CC
Q 008920 318 AC 319 (548)
Q Consensus 318 a~ 319 (548)
..
T Consensus 364 yn 365 (378)
T KOG1996|consen 364 YN 365 (378)
T ss_pred cc
Confidence 64
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.31 E-value=0.19 Score=42.22 Aligned_cols=51 Identities=16% Similarity=0.372 Sum_probs=37.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
+..+|+ .|..+...||.++|+.||.|.--.| +-.-|||.....+.|..|+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-------------------------~dTSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-------------------------NDTSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-------------------------CTTEEEEEECCCHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-------------------------cCCcEEEEeecHHHHHHHHH
Confidence 456666 9999999999999999999843344 22579999999999999884
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.20 E-value=0.016 Score=57.91 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=45.8
Q ss_pred CCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeee
Q 008920 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQ 417 (548)
Q Consensus 364 ~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak 417 (548)
+|.|+.+.|..+. .-...|-+||.|...++|++|+..|| .++.|++|...++.
T Consensus 93 ygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 93 YGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred hhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3999999777653 45668899999999999999999888 99999999999874
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.08 E-value=0.036 Score=61.02 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=57.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs-~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
-..+..|+|.||-.-.|.-+|+.|+. .+|.|+..+| |. -+..|||.|.+.+.|.+-
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk---------------------IKShCyV~yss~eEA~at 497 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK---------------------IKSHCYVSYSSVEEAAAT 497 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH---------------------hhcceeEecccHHHHHHH
Confidence 34567899999999999999999999 5788888766 22 225899999999999988
Q ss_pred H-Hhcceee---cCceeEeecC
Q 008920 301 L-AFNMAVI---GGNHIRLDRA 318 (548)
Q Consensus 301 l-~lng~~~---~gr~I~V~~a 318 (548)
+ +|||..+ ++++|.|+|.
T Consensus 498 r~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 498 REALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred HHHHhccccCCCCCceeEeeec
Confidence 8 6888765 3345555554
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.96 E-value=0.23 Score=46.12 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=51.6
Q ss_pred CCccEEEEeCCCC------CCCH---HHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCC
Q 008920 334 DIKKTVFVGNLPF------DVKD---EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNL 404 (548)
Q Consensus 334 ~~~~tLfV~NLp~------~~te---edL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~ 404 (548)
++..||.|.-+.. .+.+ .+|.+.|..| |.|.-||++-+ .-+|+|.+-..|.+|+.+.+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~----GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~ 92 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY----GEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGI 92 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC----S-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCS
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC----CceEEEEEeCC--------eEEEEECccHHHHHHHccCCc
Confidence 3456666665541 1222 3667777888 88888887755 568999999999999999999
Q ss_pred ccCCeEEEEEeeecC
Q 008920 405 KLRDRELRLSHAQQN 419 (548)
Q Consensus 405 ~l~Gr~I~V~~Ak~~ 419 (548)
.++|+.|.|..-.|.
T Consensus 93 ~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 93 QVNGRTLKIRLKTPD 107 (146)
T ss_dssp EETTEEEEEEE----
T ss_pred EECCEEEEEEeCCcc
Confidence 999999999987765
No 182
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.69 E-value=0.059 Score=57.24 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=58.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC--CccCCeEEEEE
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN--LKLRDRELRLS 414 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln--~~l~Gr~I~V~ 414 (548)
+.|||+||...++..||..+|..... | . +-.++. -.||+||.+.+...|..|++.++ ..+.|..+.|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~--~-~-~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI--P-G-SGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC--C-C-Ccceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 46899999999999999999976521 1 1 111111 25799999999999999999987 88999999999
Q ss_pred eeecC
Q 008920 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
+..+.
T Consensus 72 ~sv~k 76 (584)
T KOG2193|consen 72 HSVPK 76 (584)
T ss_pred chhhH
Confidence 98765
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.53 E-value=0.19 Score=51.27 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce-EEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeee
Q 008920 350 DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG-IAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQ 417 (548)
Q Consensus 350 eedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG-~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak 417 (548)
++++.+.+.+| |.|..|.|..++....... --||+|...++|.+|+-.|| ..|+||.+...|..
T Consensus 300 ede~keEceKy----g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKY----GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhh----cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45677888888 8999998887754322222 36999999999999987777 99999999988864
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.03 E-value=0.095 Score=50.33 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=47.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhh-cCCe---eEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIK-FGEI---DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~-fG~I---~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
...|.|++||+++|++++++.++. ++.. ..+... .... + +.. ....-|||.|.+.+++...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~---~~~~--~---------~~~-~~~SRaYi~F~~~~~~~~F 71 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGK---YGKK--S---------FKP-PTYSRAYINFKNPEDLLEF 71 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEE---ES-S--S---------STT-S--EEEEEEESSCHHHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecC---CCCc--c---------CCC-CcceEEEEEeCCHHHHHHH
Confidence 468999999999999999997776 6654 222210 1100 0 001 1234699999999998887
Q ss_pred H-HhcceeecCc-----eeEeecCC
Q 008920 301 L-AFNMAVIGGN-----HIRLDRAC 319 (548)
Q Consensus 301 l-~lng~~~~gr-----~I~V~~a~ 319 (548)
+ .++|..|.+. ...|.+|.
T Consensus 72 ~~~~~g~~F~D~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 72 RDRFDGHVFVDSKGNEYPAVVEFAP 96 (176)
T ss_dssp HHHCTTEEEE-TTS-EEEEEEEE-S
T ss_pred HHhcCCcEEECCCCCCcceeEEEcc
Confidence 7 5889887553 44455543
No 185
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.42 E-value=0.5 Score=48.54 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=55.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhcc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNM 305 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~lng 305 (548)
.=|-|-++|.... ..|..+|++||.|..+... . .-.+-+|.|.+.-+|++||..||
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~----------~-------------ngNwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP----------S-------------NGNWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC----------C-------------CCceEEEEecchhHHHHhhhhcC
Confidence 3455667877654 4788999999999877651 1 22589999999999999999999
Q ss_pred eeecCc-eeEeecCCCc
Q 008920 306 AVIGGN-HIRLDRACPP 321 (548)
Q Consensus 306 ~~~~gr-~I~V~~a~~~ 321 (548)
.+|.|. .|-|..+..+
T Consensus 254 ~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 254 TIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eeeccceEEeeeecCCH
Confidence 999886 5667776543
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.37 E-value=0.65 Score=36.95 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=45.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l 402 (548)
...|+|.++.. ++.+||..+|..|... .....|..+-|. -|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~-~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDE-EGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhccc-CCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35799999966 8889999999988211 245567777663 6899999999999999764
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.68 E-value=0.63 Score=43.00 Aligned_cols=71 Identities=25% Similarity=0.270 Sum_probs=53.2
Q ss_pred ccEEEEcCCCCCC----cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008920 225 LRTIFVGNLPLKV----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 225 ~rtVfVgNLP~~~----tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
-.||.|+=|..++ +...|...++.||+|.+|.+. .+--|.|+|.+..+|-.|
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------------------------GrqsavVvF~d~~SAC~A 141 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------------------------GRQSAVVVFKDITSACKA 141 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------------------------CCceEEEEehhhHHHHHH
Confidence 4688887666554 344556677889999999872 234799999999999999
Q ss_pred HHhcceeecCceeEeecCC
Q 008920 301 LAFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 301 l~lng~~~~gr~I~V~~a~ 319 (548)
+..-+....|..+.+.|-+
T Consensus 142 v~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 142 VSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred HHhhcCCCCCceEEeeccc
Confidence 9533446778888888854
No 188
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.59 E-value=9.2 Score=39.47 Aligned_cols=171 Identities=13% Similarity=0.160 Sum_probs=103.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+=..|.|.+.||...++-..+...|-.||+|++|.++.... .+. .+.+.......+.+-|-+.+.|....
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~----~~~------d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSND----KPS------DDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCC----ccc------ccccccccceEEEEeeechHHHHHHH
Confidence 33457899999999999999999999999999999955332 111 11223345567899999998876553
Q ss_pred -H----hc--ceeecCceeEeecCCCcccccC--CCC---------------CCcCCCccEEEEeCCCCCCCHHHHHHHH
Q 008920 302 -A----FN--MAVIGGNHIRLDRACPPRKKLK--GED---------------APLYDIKKTVFVGNLPFDVKDEEIYQLF 357 (548)
Q Consensus 302 -~----ln--g~~~~gr~I~V~~a~~~~k~~~--~~~---------------~~~~~~~~tLfV~NLp~~~teedL~~~F 357 (548)
. |. .+.+....|.|.+..-...... ... -.....++.|.|.--.....++-|...+
T Consensus 82 NnvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL 161 (309)
T PF10567_consen 82 NNVLQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKL 161 (309)
T ss_pred HHHHHHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhh
Confidence 1 21 2345556666665542111100 000 1112346778876332222333333333
Q ss_pred hccCCCCC----CeEEEEEeecC--CCCCCceEEEEEECCHHHHHHHHHHcC
Q 008920 358 CGLNDLES----SVEAVRVIRHP--HMRVGKGIAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 358 ~~~g~~~G----~I~~VrI~~d~--~tg~srG~AFV~F~~~e~A~~Al~~ln 403 (548)
+|-...+ -|++|.|+.-. ...-+..||.++|-+...|...++.+.
T Consensus 162 -~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 162 -PFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred -hhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 1110012 47888888543 234567799999999999999987665
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.34 E-value=0.1 Score=56.22 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=62.3
Q ss_pred CcccEEEEcCCCCCC-cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKV-KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~-tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
.+.+.|-+.-+|+.+ |-.+|..+|.+||.|..|.+.. +.-.|.|+|.+..+|-.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-----------------------~~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-----------------------SSLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-----------------------chhhheeeeeccccccchh
Confidence 355677777777775 5688999999999999998832 1236999999999998899
Q ss_pred HhcceeecCceeEeecCCC
Q 008920 302 AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~ 320 (548)
..++..|.++.|.|.|..+
T Consensus 427 ~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 427 ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccccceecCceeEEEEecC
Confidence 8999999999999999865
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.46 E-value=1.1 Score=41.46 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=56.5
Q ss_pred CCccEEEEeCCCCCC----CHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCe
Q 008920 334 DIKKTVFVGNLPFDV----KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDR 409 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~----teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr 409 (548)
.+-.+|.|+=|..++ +-..|...++.| |.|.+|.+. ++.-|.|.|.+..+|-.|+.+++....|.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~f----GpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF----GPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhc----CCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 345677776555544 334445556778 999999764 24479999999999999999999888899
Q ss_pred EEEEEeeec
Q 008920 410 ELRLSHAQQ 418 (548)
Q Consensus 410 ~I~V~~Ak~ 418 (548)
.+.+.|-..
T Consensus 153 m~qCsWqqr 161 (166)
T PF15023_consen 153 MFQCSWQQR 161 (166)
T ss_pred eEEeecccc
Confidence 999998654
No 191
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.32 E-value=0.3 Score=41.61 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=46.8
Q ss_pred EEEEecCHHHHHHHHHh--cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHh
Q 008920 287 AYIVFKSEQSTEAALAF--NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (548)
Q Consensus 287 AFV~F~s~e~A~~Al~l--ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~ 358 (548)
|+|+|.++.-|+..+.+ +...+.+..+.|....-.........-......++|.|.|||..+.+++|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999864 5556666655554332111110000111233568999999999999999987664
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.79 E-value=0.71 Score=44.36 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=47.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCe---EEEEEeecCCC--CCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSV---EAVRVIRHPHM--RVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~-~g~~~G~I---~~VrI~~d~~t--g~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
....|.|++||+.+|+++++..+.. + +.- ..+.-...... ...-.-|||.|.+.+++...+..++ ..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l----~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWL----PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS------SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhc----ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 3468999999999999999997777 4 333 33332222211 1223359999999999888888775 3442
Q ss_pred C-----eEEEEEeeecC
Q 008920 408 D-----RELRLSHAQQN 419 (548)
Q Consensus 408 G-----r~I~V~~Ak~~ 419 (548)
+ ....|.+|--.
T Consensus 82 D~kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPYQ 98 (176)
T ss_dssp -TTS-EEEEEEEE-SS-
T ss_pred CCCCCCcceeEEEcchh
Confidence 2 45667777544
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.72 E-value=1.4 Score=35.00 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhc----CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~f----G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
..|+|.+|. +++.++|..+|..| ++ ..|..+-+ .-|=|.|.+.+.|..||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD------------------------tScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD------------------------TSCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC------------------------CcEEEEECCHHHHHHHH
Confidence 479999995 58889999999998 53 46666332 25889999999999998
Q ss_pred H
Q 008920 302 A 302 (548)
Q Consensus 302 ~ 302 (548)
.
T Consensus 60 ~ 60 (62)
T PF10309_consen 60 V 60 (62)
T ss_pred H
Confidence 3
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.79 E-value=2.2 Score=36.08 Aligned_cols=54 Identities=26% Similarity=0.453 Sum_probs=39.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln 403 (548)
...||. +|..+-..||.++|+.| |.|. |..+.| .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf----G~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF----GQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC----CCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccC----CcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 445555 99999999999999999 6663 555555 279999999999999988775
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.78 E-value=0.22 Score=51.76 Aligned_cols=81 Identities=16% Similarity=0.370 Sum_probs=59.4
Q ss_pred cEEEEcCCCCCCcHHHHH---HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008920 226 RTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~---~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
.-|||-+|+.....+.+. ++|.+||.|..|.+..++.. ... .+.. .-+||.|...++|..||
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~--~s~-----------~~~~-~s~yITy~~~eda~rci~ 143 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS--SSS-----------SGGT-CSVYITYEEEEDADRCID 143 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc--ccC-----------CCCC-CcccccccchHhhhhHHH
Confidence 458999999887666555 58999999999988554410 000 1111 23899999999999999
Q ss_pred HhcceeecCceeEeecCCC
Q 008920 302 AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~ 320 (548)
..+|..+.|+.|...+...
T Consensus 144 ~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 144 DVDGFVDDGRALKASLGTT 162 (327)
T ss_pred HhhhHHhhhhhhHHhhCCC
Confidence 5899999999877776643
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.12 E-value=2.6 Score=45.61 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=56.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~f-G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
.+.|+|-.+|..+|-.||..|+..| -.|..|+|+++.+. ++=.++|.|.+..+|.... .
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 6899999999999999999999865 47889999775532 3346899999999999998 6
Q ss_pred hcceeecC
Q 008920 303 FNMAVIGG 310 (548)
Q Consensus 303 lng~~~~g 310 (548)
+||..|..
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99998865
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=85.50 E-value=5.7 Score=35.26 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=45.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~f-G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
..+.+...|+.++-++|..+.+.+ ..|..++|+++... ++=.+.|.|.+.++|.... .+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHh
Confidence 345555555666666776666655 45677888664321 3446899999999999988 68
Q ss_pred cceeecC
Q 008920 304 NMAVIGG 310 (548)
Q Consensus 304 ng~~~~g 310 (548)
||..|..
T Consensus 75 NGk~Fns 81 (110)
T PF07576_consen 75 NGKPFNS 81 (110)
T ss_pred CCCccCC
Confidence 9998854
No 198
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.20 E-value=0.97 Score=45.52 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=56.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-ln 304 (548)
..|||.||+.-+.-+.|..-|+.||+|....+.-|. .+...+-++|.|...-.|.+|+. +.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~------------------r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD------------------RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc------------------cccccccchhhhhcchhHHHHHHHhc
Confidence 469999999999999999999999999876553221 34567889999999999999984 32
Q ss_pred -c---eeecCceeEeecC
Q 008920 305 -M---AVIGGNHIRLDRA 318 (548)
Q Consensus 305 -g---~~~~gr~I~V~~a 318 (548)
+ ....+++..|...
T Consensus 94 ~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 94 EGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred cCccccCCCCCccCCChh
Confidence 2 2334556555554
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.81 E-value=16 Score=32.39 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=54.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC---CeE
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR---DRE 410 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~---Gr~ 410 (548)
....+.+...|+.++-++|..+...+. ..|..++|++|.. .++-.+.+.|.+.+.|..-....| ..+. ...
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~---~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ 86 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFR---EDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPET 86 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhccc---ccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCce
Confidence 345555666666677777776666663 5788999999842 356679999999999999987776 4443 344
Q ss_pred EEEEeee
Q 008920 411 LRLSHAQ 417 (548)
Q Consensus 411 I~V~~Ak 417 (548)
-+|-|..
T Consensus 87 ChvvfV~ 93 (110)
T PF07576_consen 87 CHVVFVK 93 (110)
T ss_pred eEEEEEE
Confidence 4444443
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.50 E-value=3 Score=40.43 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=42.8
Q ss_pred cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc--ceeecCceeE
Q 008920 238 KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN--MAVIGGNHIR 314 (548)
Q Consensus 238 tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln--g~~~~gr~I~ 314 (548)
....|..+|..|+.+..+.++. +-+-..|.|.+.++|..|. .|+ +..|.|..|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----------------------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----------------------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----------------------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----------------------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 4578999999999887776521 3456899999999999998 578 8999999999
Q ss_pred eecCCC
Q 008920 315 LDRACP 320 (548)
Q Consensus 315 V~~a~~ 320 (548)
|.++..
T Consensus 65 ~yf~~~ 70 (184)
T PF04847_consen 65 VYFGQP 70 (184)
T ss_dssp EE----
T ss_pred EEEccc
Confidence 998854
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=82.22 E-value=4.3 Score=45.02 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=50.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCCeEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRDREL 411 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~Gr~I 411 (548)
.+.|.|+-||..+-.++|+.+|..-. |-.+.+|.+-.+- -=||+|++..+|+.|...|. ..|.|++|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~en--cPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGEN--CPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCC--CCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 45677899999999999999996521 1477888766542 24999999999999987664 56666554
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.52 E-value=1.4 Score=49.63 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=58.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008920 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
.++..+|||+|+...+..+-+..++..| |.|.++..+. |||..|..+.....|+..+. ..++|..+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 4567899999999999999999999988 7777664322 99999999999999999888 88888777
Q ss_pred EEEe
Q 008920 412 RLSH 415 (548)
Q Consensus 412 ~V~~ 415 (548)
.+.-
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 6654
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=80.01 E-value=0.95 Score=49.11 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=59.7
Q ss_pred ccEEEEeCCCCCC-CHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEE
Q 008920 336 KKTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~-teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~ 414 (548)
.+.|-+.-.|+.+ +-++|..+|..| |.|..|.|-... --|.|+|.+..+|-.|.......|++|.|.|.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~f----G~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQF----GEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhc----CccccccccCch------hhheeeeeccccccchhccccceecCceeEEE
Confidence 3455555566655 578999999999 999999775542 36899999999998888777799999999999
Q ss_pred eeecC
Q 008920 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
|-.+.
T Consensus 442 whnps 446 (526)
T KOG2135|consen 442 WHNPS 446 (526)
T ss_pred EecCC
Confidence 98874
No 204
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=79.74 E-value=0.85 Score=47.55 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=59.8
Q ss_pred ccEEEEeCCCCCCCHHHHH---HHHhccCCCCCCeEEEEEeecCC--CCC-CceEEEEEECCHHHHHHHHHHcC-CccCC
Q 008920 336 KKTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPH--MRV-GKGIAYVLFKTREAANLVIKRRN-LKLRD 408 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~---~~F~~~g~~~G~I~~VrI~~d~~--tg~-srG~AFV~F~~~e~A~~Al~~ln-~~l~G 408 (548)
.+-+||-+|+..+..+.+. ..|.+| |.|..|.+..+.. .+. +-.-+||+|...++|..||...+ ..+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqy----gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQY----GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccccc----ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh
Confidence 4568888899887665554 567777 8999998888762 111 11138999999999999998887 88888
Q ss_pred eEEEEEeeecC
Q 008920 409 RELRLSHAQQN 419 (548)
Q Consensus 409 r~I~V~~Ak~~ 419 (548)
+.|...+...+
T Consensus 153 ~~lka~~gttk 163 (327)
T KOG2068|consen 153 RALKASLGTTK 163 (327)
T ss_pred hhhHHhhCCCc
Confidence 88877777654
No 205
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.55 E-value=5.1 Score=42.78 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=50.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...+.|-|.++|.....+||...|..|+.- .+.|.++. ..+||.+|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvD----------------------dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVD----------------------DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcC-CceeEEee----------------------cceeEEeecchHHHHHHhh
Confidence 357899999999999999999999999752 44444432 2489999999999999998
Q ss_pred hcceeecCc
Q 008920 303 FNMAVIGGN 311 (548)
Q Consensus 303 lng~~~~gr 311 (548)
+...++.-+
T Consensus 446 ~kh~~lKiR 454 (528)
T KOG4483|consen 446 LKHDWLKIR 454 (528)
T ss_pred ccCceEEee
Confidence 744444333
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=79.00 E-value=2.2 Score=39.08 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=61.1
Q ss_pred CcceEEEEecCHHHHHHHHHhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCC-CCHHHHHHHHhccC
Q 008920 283 DSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLN 361 (548)
Q Consensus 283 skG~AFV~F~s~e~A~~Al~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~F~~~g 361 (548)
..++..+.|.+.+++..++......|.|..|.+....+...... ........-|.|.|||.. .+++-|..+.+.+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~i- 129 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSE---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKI- 129 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccc---cceeccchhhhhccCCHHHhhhHHHHHHHHhc-
Confidence 34799999999999999998878888898888888764321110 011112344677899987 5788888888888
Q ss_pred CCCCCeEEEEEee
Q 008920 362 DLESSVEAVRVIR 374 (548)
Q Consensus 362 ~~~G~I~~VrI~~ 374 (548)
|.+..+....
T Consensus 130 ---G~~i~vD~~t 139 (153)
T PF14111_consen 130 ---GEPIEVDENT 139 (153)
T ss_pred ---CCeEEEEcCC
Confidence 8888886543
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=78.21 E-value=1.1 Score=50.45 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=72.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..-+|||+||...+..+-+..+...||.|.++... -|||..|..+.....|+.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------------------------~fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------------------------KFGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------------------------hhcccchhhHHHHHHHHHH
Confidence 34689999999999999999999999988776541 299999999999999984
Q ss_pred hcceeecCceeEeecCCC----cc--cccCCCCCCcC---CCccEEEEeCCCCCCCHHHHHHHHhc
Q 008920 303 FNMAVIGGNHIRLDRACP----PR--KKLKGEDAPLY---DIKKTVFVGNLPFDVKDEEIYQLFCG 359 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~----~~--k~~~~~~~~~~---~~~~tLfV~NLp~~~teedL~~~F~~ 359 (548)
++...++|..+.+..-.. .. +.......... ...+.++|.|+|-...+......|.-
T Consensus 93 ~t~~~~~~~kl~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 93 LTELNIDDQKLIENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred hcccCCCcchhhccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhc
Confidence 667777777666654211 00 00000000001 11455677777776666555555543
No 208
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=76.57 E-value=4.5 Score=44.92 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=50.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhh--cCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIK--FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~--fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
..|.|+|+-||..+-.++|+.||.. |-.+.+|.+-. .-.=||+|++..+|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~------------------------N~nWyITfesd~DAQqAy 229 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH------------------------NDNWYITFESDTDAQQAY 229 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee------------------------cCceEEEeecchhHHHHH
Confidence 4578999999999999999999985 78888888721 124699999999999997
Q ss_pred H-h--cceeecCcee
Q 008920 302 A-F--NMAVIGGNHI 313 (548)
Q Consensus 302 ~-l--ng~~~~gr~I 313 (548)
. | .-..|.|..|
T Consensus 230 kylreevk~fqgKpI 244 (684)
T KOG2591|consen 230 KYLREEVKTFQGKPI 244 (684)
T ss_pred HHHHHHHHhhcCcch
Confidence 4 3 2334555443
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.59 E-value=12 Score=30.48 Aligned_cols=61 Identities=15% Similarity=0.365 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHhccCCCC-CCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEee
Q 008920 347 DVKDEEIYQLFCGLNDLE-SSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHA 416 (548)
Q Consensus 347 ~~teedL~~~F~~~g~~~-G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~A 416 (548)
.++..+|..+++..+.+. ..|-.|+|..+ |+||+-... .|..++..++ ..+.|+.|.|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478889999997763111 25666777654 899987654 6777888877 9999999999865
No 210
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.04 E-value=0.78 Score=46.54 Aligned_cols=32 Identities=41% Similarity=0.608 Sum_probs=27.0
Q ss_pred cEEEEcCCCCC------------CcHHHHHHHhhhcCCeeEEEE
Q 008920 226 RTIFVGNLPLK------------VKKKTLIKEFIKFGEIDSVRI 257 (548)
Q Consensus 226 rtVfVgNLP~~------------~tee~L~~~Fs~fG~I~sVri 257 (548)
.||++.+||-. -+++-|...|..||.|..|.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 48999999853 257789999999999998887
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.78 E-value=13 Score=38.51 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=53.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCe-EEEEEe
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDR-ELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr-~I~V~~ 415 (548)
.-|.|-++|.. .-..|..+|..| |.|+.+... ..-.+-+|.|.+.-+|++||...+..|+|- .|-|..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~c----G~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRC----GEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhh----CeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 34555566663 345678889999 888876433 223488999999999999999999888884 566777
Q ss_pred eecC
Q 008920 416 AQQN 419 (548)
Q Consensus 416 Ak~~ 419 (548)
|.++
T Consensus 267 CtDk 270 (350)
T KOG4285|consen 267 CTDK 270 (350)
T ss_pred cCCH
Confidence 7665
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=67.77 E-value=12 Score=36.31 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=42.1
Q ss_pred CHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCCeEEEEEeeecC
Q 008920 349 KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRDRELRLSHAQQN 419 (548)
Q Consensus 349 teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~Gr~I~V~~Ak~~ 419 (548)
....|+.+|..| +.+..+.++.. -+=..|.|.+.++|..|...++ ..+.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~----~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTY----DPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-----SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhc----CCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999 67766665544 2357899999999999998876 6799999999999643
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.55 E-value=27 Score=38.14 Aligned_cols=68 Identities=9% Similarity=0.259 Sum_probs=56.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD 408 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G 408 (548)
...|+|-.+|..++-.||..|+..|. -.|..++|++|.. ..+-...|.|.+.++|......+| ..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~---~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI---KQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh---hhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999998874 5899999999743 234468999999999999988776 55543
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=64.33 E-value=4.2 Score=47.20 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=60.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCCeEEEEE
Q 008920 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRDRELRLS 414 (548)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~Gr~I~V~ 414 (548)
+.++.|++-..+---|..+|..| |.|.+.+..++- ..|.|.|...+.|..|++++. ..+-|-+.+|.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~y----g~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDY----GSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhh----cchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 44556666777888999999999 899999888873 389999999999999998886 55678889999
Q ss_pred eeecC
Q 008920 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
+|+.-
T Consensus 370 ~ak~~ 374 (1007)
T KOG4574|consen 370 FAKTL 374 (1007)
T ss_pred ecccc
Confidence 99864
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.07 E-value=29 Score=38.96 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=63.8
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhccCCCCCCeEEEEEeecCC----------CCC---------------------
Q 008920 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPH----------MRV--------------------- 380 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~-~teedL~~~F~~~g~~~G~I~~VrI~~d~~----------tg~--------------------- 380 (548)
...++.|-|-||.|+ +...||.-+|..|....|.|.+|.|....- .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 789999999999877768999998874310 111
Q ss_pred ----------------CceEEEEEECCHHHHHHHHHHcC-CccCC--eEEEEEeeec
Q 008920 381 ----------------GKGIAYVLFKTREAANLVIKRRN-LKLRD--RELRLSHAQQ 418 (548)
Q Consensus 381 ----------------srG~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~V~~Ak~ 418 (548)
.--||.|+|.+...|........ +.|.. ..|.+.|...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 12379999999999999987766 55544 5566666543
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.97 E-value=36 Score=27.45 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-HhcceeecCceeE
Q 008920 236 KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIR 314 (548)
Q Consensus 236 ~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~ 314 (548)
.++-++|+..+..|+- ..|+. + ..|| ||.|.+..+|+.|. ..+|..+.+..|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d----------------------~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--D----------------------RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--c----------------------CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4677899999999984 34444 1 2354 99999999999999 5788888877765
Q ss_pred e
Q 008920 315 L 315 (548)
Q Consensus 315 V 315 (548)
+
T Consensus 65 M 65 (66)
T PF11767_consen 65 M 65 (66)
T ss_pred e
Confidence 4
No 217
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=59.52 E-value=5.9 Score=46.07 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc
Q 008920 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (548)
.+.++-|.+...+-..|..+|+.||.|.+++.+++ -..|.|.|.+.+.|..|+ +++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----------------------~N~alvs~~s~~sai~a~dAl~ 355 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----------------------LNMALVSFSSVESAILALDALQ 355 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-----------------------ccchhhhhHHHHHHHHhhhhhc
Confidence 45666777778899999999999999999988442 247999999999999999 688
Q ss_pred ceee--cCceeEeecCCC
Q 008920 305 MAVI--GGNHIRLDRACP 320 (548)
Q Consensus 305 g~~~--~gr~I~V~~a~~ 320 (548)
|..+ -|-+.+|.++..
T Consensus 356 gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 356 GKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred CCcccccCCceeEEeccc
Confidence 8764 567778877753
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.57 E-value=26 Score=39.42 Aligned_cols=96 Identities=23% Similarity=0.194 Sum_probs=61.0
Q ss_pred CCcccEEEEcCCCCC-CcHHHHHHHhhhc----CCeeEEEEeeecccCCC-------CC-ccch----------------
Q 008920 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKF----GEIDSVRIRSVPIIDTK-------IP-RKGA---------------- 272 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~-~tee~L~~~Fs~f----G~I~sVri~~~~~~~~~-------~p-rkga---------------- 272 (548)
....+.|-|.||.|+ +.-++|.-+|..| |.|.+|.|....+.... .| ..+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 344678999999997 7889999999976 58889988433222111 11 1100
Q ss_pred -----hhhhhhccC-CCcceEEEEecCHHHHHHHH-HhcceeecCceeEeec
Q 008920 273 -----ILQKQINEN-ADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (548)
Q Consensus 273 -----~~~~~~~~g-~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V~~ 317 (548)
..++.+.-+ ...=||.|+|.+.+.|.+.. .++|..|..-.+.+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 011122111 12337999999999999988 5899998765444433
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.52 E-value=23 Score=38.00 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEE
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDREL 411 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I 411 (548)
...|-|.++|...-.+||...|+.|+ +.-..|.++-|. .||..|.+...|..||.+-+.+|.=|+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq---~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQ---NKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhh---cCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 46788999999999999999999996 344556555552 7999999999999998775544443433
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.20 E-value=22 Score=36.35 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=29.1
Q ss_pred CccEEEEeCCCCCC------------CHHHHHHHHhccCCCCCCeEEEEEee
Q 008920 335 IKKTVFVGNLPFDV------------KDEEIYQLFCGLNDLESSVEAVRVIR 374 (548)
Q Consensus 335 ~~~tLfV~NLp~~~------------teedL~~~F~~~g~~~G~I~~VrI~~ 374 (548)
...+||+.+||..| +++-|+..|..| |.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf----g~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF----GEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHh----ccceecCCcc
Confidence 45689998888543 578899999999 8999988774
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=45.17 E-value=89 Score=25.19 Aligned_cols=54 Identities=11% Similarity=0.229 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008920 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 347 ~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
.++-++|+..+..| ....| ..|. .| =||.|.+..+|.+|....+ ..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y-----~~~~I--~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-----RWDRI--RDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC-----CcceE--EecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 36788999999999 34444 4442 23 3899999999999998887 6666665544
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=42.35 E-value=41 Score=34.67 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=37.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCe-eEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHH
Q 008920 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I-~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e 295 (548)
...+-|+|+|||.++--.+|...+...|.+ .+|.. . .+.|-||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k---------------------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K---------------------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee--e---------------------cCCcceeEecCCcc
Confidence 344569999999999999999999887744 23322 0 15688999998753
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=41.80 E-value=93 Score=25.14 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=32.7
Q ss_pred CCcHHHHHHHhhhcCCe-----eEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhcceeec
Q 008920 236 KVKKKTLIKEFIKFGEI-----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIG 309 (548)
Q Consensus 236 ~~tee~L~~~Fs~fG~I-----~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~ 309 (548)
.++..+|..++...+.| -.|.| ...|+||+-... .|..++ .|++..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I-------------------------~~~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI-------------------------FDNFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE-------------------------eeeEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 57888999988876544 45665 225899988865 566677 68999999
Q ss_pred CceeEeecC
Q 008920 310 GNHIRLDRA 318 (548)
Q Consensus 310 gr~I~V~~a 318 (548)
|+.|.|..|
T Consensus 66 gk~v~ve~A 74 (74)
T PF03880_consen 66 GKKVRVERA 74 (74)
T ss_dssp S----EEE-
T ss_pred CeeEEEEEC
Confidence 999999764
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=39.47 E-value=28 Score=31.17 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=31.8
Q ss_pred EEEEcCCCCC---------CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHH
Q 008920 227 TIFVGNLPLK---------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (548)
Q Consensus 227 tVfVgNLP~~---------~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A 297 (548)
++.|-|+|.. ++-+.|.+.|..|.++. |+.+..+ ..++|++.|.|...-.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCChHH
Confidence 5777888654 35678999999999874 4443322 12779999999876543
Q ss_pred -HHHHHhcc
Q 008920 298 -EAALAFNM 305 (548)
Q Consensus 298 -~~Al~lng 305 (548)
..|+.|+.
T Consensus 70 f~~A~~l~~ 78 (116)
T PF03468_consen 70 FKNAMRLEK 78 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666543
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=38.81 E-value=52 Score=33.96 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=34.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCH
Q 008920 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~ 392 (548)
..-|||+||+.++.-.||+..+... |. .-..|... .+.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~----~~-~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKR----EC-TPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhc----CC-CceeEeee----cCCcceeEecCCc
Confidence 3569999999999999999999877 22 22223222 2467899999773
No 226
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.96 E-value=52 Score=33.11 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEE
Q 008920 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri 257 (548)
...++|+-|||..+|++.|..+.+.+|-+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 3468999999999999999999999996655544
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.89 E-value=1.1e+02 Score=31.96 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=61.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCC-------CCCCceEEEEEECCHHHHHHH----HHHcC
Q 008920 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH-------MRVGKGIAYVLFKTREAANLV----IKRRN 403 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~-------tg~srG~AFV~F~~~e~A~~A----l~~ln 403 (548)
.++.|.+.|+..+++-..+...|-.| |+|++|.++.+.. .........+.|-+.+.|... |+.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~----~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKF----GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhcc----CceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 35788899999999888888889999 9999999998751 122334678899998887655 33443
Q ss_pred ---CccCCeEEEEEeeec
Q 008920 404 ---LKLRDRELRLSHAQQ 418 (548)
Q Consensus 404 ---~~l~Gr~I~V~~Ak~ 418 (548)
..|....|.|.|..-
T Consensus 90 EfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHhcCCcceeEEEEEE
Confidence 677888899988864
No 228
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.16 E-value=67 Score=35.90 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=45.8
Q ss_pred EEEcCCCCCCc---HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcce-EEEEecCHHHHHHHHHh
Q 008920 228 IFVGNLPLKVK---KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAALAF 303 (548)
Q Consensus 228 VfVgNLP~~~t---ee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~-AFV~F~s~e~A~~Al~l 303 (548)
=+||||+.-.. ...|..+=..||+|-.++| |. -.|.-.+.+.|..|+..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l---------------------------G~~~~Vviss~~~akE~l~~ 87 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL---------------------------GSVPVVVISSYEAAKEVLVK 87 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEe---------------------------cCceEEEECCHHHHHHHHHh
Confidence 46788876443 3455555568999999888 33 47888999999999988
Q ss_pred cceeecCcee
Q 008920 304 NMAVIGGNHI 313 (548)
Q Consensus 304 ng~~~~gr~I 313 (548)
++..|.+|+.
T Consensus 88 ~d~~fa~Rp~ 97 (489)
T KOG0156|consen 88 QDLEFADRPD 97 (489)
T ss_pred CCccccCCCC
Confidence 8999999986
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.13 E-value=76 Score=28.40 Aligned_cols=56 Identities=16% Similarity=0.289 Sum_probs=29.2
Q ss_pred EEEEeCCCCC---------CCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECC-HHHHHHHHH
Q 008920 338 TVFVGNLPFD---------VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT-REAANLVIK 400 (548)
Q Consensus 338 tLfV~NLp~~---------~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~-~e~A~~Al~ 400 (548)
++.|-|++.. ++.+.|.+.|..| ..+ .|+.+.+.. .+.|+++|.|.. -.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f----~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF----NPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH-------S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc----CCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4556666443 3568899999999 344 455555532 568999999976 333444443
No 230
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=28.73 E-value=1.2e+02 Score=24.40 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008920 351 EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 351 edL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
++|.+-|...| -.|..|.-+..+.++..-..-||++....+ ..+.++ ..|+|..|.|.....
T Consensus 2 ~~I~~~L~~~G---~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQG---HPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcC---CceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 45677777663 378888877777677777788888877655 233455 778999999886543
No 231
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.16 E-value=71 Score=34.29 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=46.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCC-eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008920 225 LRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~-I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
...|.|.+||+..++.+|.+....|-. |....+.. .+.+. ...-.+.|||.|..++++.....
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~---a~~s~------------~~~~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAK---ADESL------------RNHKYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheecc---ccccc------------hhhhhhhhhhccccHHHHHHHHhh
Confidence 357999999999999999988887542 22222211 11100 11235689999999999666653
Q ss_pred hcceeecC
Q 008920 303 FNMAVIGG 310 (548)
Q Consensus 303 lng~~~~g 310 (548)
++|++|..
T Consensus 72 f~g~ifld 79 (376)
T KOG1295|consen 72 FDGYIFLD 79 (376)
T ss_pred CCceEEec
Confidence 67777644
No 232
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.08 E-value=17 Score=39.39 Aligned_cols=78 Identities=6% Similarity=-0.088 Sum_probs=61.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008920 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
...|+..||..+++.++.-+|..| |.|..+.+.+....|...-++||.-.+ .+|..||.-+. ..+.|-.++|..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~----~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~ 78 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDP----SIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAV 78 (572)
T ss_pred hhhhHhhcccccccchhhhhccCC----cceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhc
Confidence 345678899999999999999999 899988888776777778888888655 44566666555 778888889888
Q ss_pred eecC
Q 008920 416 AQQN 419 (548)
Q Consensus 416 Ak~~ 419 (548)
+...
T Consensus 79 ~~~s 82 (572)
T KOG4365|consen 79 SPSS 82 (572)
T ss_pred Cchh
Confidence 8754
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.26 E-value=52 Score=31.85 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=51.7
Q ss_pred ccEEEEcCCCCCCc-----HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008920 225 LRTIFVGNLPLKVK-----KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 225 ~rtVfVgNLP~~~t-----ee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
..++++.+|+..+- ......+|..|.+....+++. +.+..-|.|.+++.|..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----------------------sfrrvRi~f~~p~~a~~ 66 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----------------------SFRRVRINFSNPEAAAD 66 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----------------------hhceeEEeccChhHHHH
Confidence 45788888887642 223445677666554444311 44677889999999999
Q ss_pred HH-HhcceeecCc-eeEeecCCCc
Q 008920 300 AL-AFNMAVIGGN-HIRLDRACPP 321 (548)
Q Consensus 300 Al-~lng~~~~gr-~I~V~~a~~~ 321 (548)
|. .++...|.|. .+...++++.
T Consensus 67 a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 67 ARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred HHHHhhhcccCCCceEEEEEccCC
Confidence 97 7899999887 7777777653
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=25.11 E-value=1.3e+02 Score=24.58 Aligned_cols=61 Identities=8% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeee
Q 008920 351 EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQ 417 (548)
Q Consensus 351 edL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak 417 (548)
.+|.+-|..+| -.+..|+-+..+.++.+-..-||+.....+-.. .++ ..|+|+.|.|....
T Consensus 2 ~~I~~~L~~~G---~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIG---FPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcC---CceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35677787774 378888888887777777788888766433222 455 78899999998654
No 235
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=39 Score=36.42 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=51.4
Q ss_pred CccEEEEeCCCCCCC--------HHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHH
Q 008920 335 IKKTVFVGNLPFDVK--------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIK 400 (548)
Q Consensus 335 ~~~tLfV~NLp~~~t--------eedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~ 400 (548)
..+.+|+.+++.... .+++..+|..++ ++.+..|+.-++......+|..|++|.....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~--h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHY--HAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcc--cCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 346778877776554 459999998841 1788889988888778889999999999999999985
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.90 E-value=1.7e+02 Score=23.46 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.5
Q ss_pred HHHHHHhhhcCCeeEEEE
Q 008920 240 KTLIKEFIKFGEIDSVRI 257 (548)
Q Consensus 240 e~L~~~Fs~fG~I~sVri 257 (548)
.+|+++|+.+|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999977666
Done!