Query 008921
Match_columns 548
No_of_seqs 203 out of 978
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9.3E-54 3.2E-58 405.6 14.2 156 5-162 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 8.5E-54 2.9E-58 404.8 12.0 157 6-164 13-169 (171)
3 2oh5_A Polyhedrin, C-polyhedri 15.9 83 0.0028 29.8 2.8 28 90-117 140-168 (248)
4 1jgn_B PAIP2, polyadenylate-bi 11.4 1.3E+02 0.0044 19.9 1.9 19 399-417 4-22 (26)
5 1ldd_A APC2WHB, anaphase promo 11.3 1.1E+02 0.0039 24.9 2.1 27 11-38 37-64 (74)
6 4dox_A Coat protein; all helix 6.7 2E+02 0.0068 28.2 2.0 27 7-33 152-178 (226)
7 2li5_B Ubiquitin-like modifier 5.6 1.8E+02 0.0063 20.1 0.7 8 178-185 23-30 (34)
8 3nr5_A MAF1, repressor of RNA 5.0 1.4E+02 0.0047 27.9 -0.2 14 41-54 118-131 (164)
9 2e9g_A AP-1 complex subunit ga 4.7 2.6E+02 0.0087 24.6 1.3 11 424-434 3-13 (131)
10 1cmb_A Met APO-repressor; DNA- 4.7 6.2E+02 0.021 21.6 3.6 39 17-59 50-88 (104)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9.3e-54 Score=405.61 Aligned_cols=156 Identities=50% Similarity=0.967 Sum_probs=136.0
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCcccccCCCCcceeeeeccccccCCCCcc
Q 008921 5 FASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRT 84 (548)
Q Consensus 5 ~~~~~LPPGfRF~PTDEELV~~YLkrKi~G~pl~~d~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFs~r~kK~~nG~R~ 84 (548)
.+.+.|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+|||||++++||++|.|+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~ 87 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRP 87 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCS
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCc
Confidence 366899999999999999999999999999999999999999999999999998753 468999999999999999999
Q ss_pred ccccccceeeecCCCceeecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhh-----cCCCCCceEEEEeec
Q 008921 85 NRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEK-----AGVAQDTFVLCRIFQ 159 (548)
Q Consensus 85 nRatggGyWKatGk~r~I~~~g~vVG~KKtLvFy~Grap~G~kT~WvMhEYrL~~~~l~~-----ag~~qd~~VLCRIf~ 159 (548)
+|+|++||||+||++++|..+|++||+||+|+||.|++|++.||+|+||||+|.+..... .....++|||||||+
T Consensus 88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999999988999999999999999999999999999999999875321 112357999999999
Q ss_pred ccC
Q 008921 160 KSG 162 (548)
Q Consensus 160 K~~ 162 (548)
|++
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8.5e-54 Score=404.82 Aligned_cols=157 Identities=48% Similarity=0.912 Sum_probs=132.3
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCcccccCCCCcceeeeeccccccCCCCccc
Q 008921 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (548)
Q Consensus 6 ~~~~LPPGfRF~PTDEELV~~YLkrKi~G~pl~~d~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFs~r~kK~~nG~R~n 85 (548)
+...|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+. .++.+|||||++++||++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 5678999999999999999999999999999999999999999999999999874 34789999999999999999999
Q ss_pred cccccceeeecCCCceeecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhhcCCCCCceEEEEeecccCCC
Q 008921 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEKAGVAQDTFVLCRIFQKSGSG 164 (548)
Q Consensus 86 RatggGyWKatGk~r~I~~~g~vVG~KKtLvFy~Grap~G~kT~WvMhEYrL~~~~l~~ag~~qd~~VLCRIf~K~~~g 164 (548)
|+|++||||+||++++|..++++||+||+|+||.|++|++.||+|+||||+|...........+++|||||||+|++..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999999999899999999999999999999999999999999987522222345899999999998653
No 3
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=15.89 E-value=83 Score=29.80 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.5
Q ss_pred cceeeecC-CCceeecCCeeEEEEEEEEe
Q 008921 90 KGYWKTTG-KDRPVHHNTRTVGMKKTLVY 117 (548)
Q Consensus 90 gGyWKatG-k~r~I~~~g~vVG~KKtLvF 117 (548)
.--|.+|| +-|.|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 45699999 67888899999999988865
No 4
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=11.44 E-value=1.3e+02 Score=19.90 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.1
Q ss_pred cCCCCcccccccCCCChhh
Q 008921 399 SEQKPDIVKSESDVKYPFL 417 (548)
Q Consensus 399 s~~~~~~~~~~~~~~~~~~ 417 (548)
|.-+|++.+|.++++|--+
T Consensus 4 s~lnp~akef~pgvkygni 22 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKYGNI 22 (26)
T ss_dssp CSSCTTCCCCCTTSCTTCC
T ss_pred ccCCcchhhcCCCceecce
Confidence 4457899999999999544
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=11.34 E-value=1.1e+02 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.4
Q ss_pred CCCceeCC-ChHHHHHHHHHHHhcCCCCC
Q 008921 11 APGFRFHP-TDEELVRYYLKRKVCHRSLR 38 (548)
Q Consensus 11 PPGfRF~P-TDEELV~~YLkrKi~G~pl~ 38 (548)
|.|+.|.. |++||-. ||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 8899888 699999887664
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=6.72 E-value=2e+02 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=18.4
Q ss_pred CCCCCCCceeCCChHHHHHHHHHHHhc
Q 008921 7 STSLAPGFRFHPTDEELVRYYLKRKVC 33 (548)
Q Consensus 7 ~~~LPPGfRF~PTDEELV~~YLkrKi~ 33 (548)
++.-+-|..+.||++|+|.|=..+++.
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344456999999999999986555443
No 7
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=5.60 E-value=1.8e+02 Score=20.11 Aligned_cols=8 Identities=75% Similarity=1.315 Sum_probs=5.4
Q ss_pred cccccccc
Q 008921 178 EEWEDDEA 185 (548)
Q Consensus 178 eew~dde~ 185 (548)
-||+|||.
T Consensus 23 feweddes 30 (34)
T 2li5_B 23 FEWEDDES 30 (34)
T ss_dssp CCSSCTTS
T ss_pred cccccccc
Confidence 36887764
No 8
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=4.99 E-value=1.4e+02 Score=27.94 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=11.5
Q ss_pred CeeecCCCCCCCCC
Q 008921 41 PICVTDIYKSEPWD 54 (548)
Q Consensus 41 ~I~evDVY~~ePWd 54 (548)
.+.++|||.+.|-.
T Consensus 118 ~l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 118 CLAECDIYSYNPDL 131 (164)
T ss_dssp CGGGCEEEEECCCG
T ss_pred CccCCeEEEEcCCC
Confidence 36789999999983
No 9
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=4.68 E-value=2.6e+02 Score=24.59 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=8.8
Q ss_pred ccCCCCCcccc
Q 008921 424 LGNVAAAPAFA 434 (548)
Q Consensus 424 lg~ipappa~a 434 (548)
-|+||.|||.+
T Consensus 3 ~~~~~~~~~~~ 13 (131)
T 2e9g_A 3 SGSSGPPPAPI 13 (131)
T ss_dssp CCCCSCCCCCC
T ss_pred CCCCCCCCCCC
Confidence 38999999665
No 10
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=4.66 E-value=6.2e+02 Score=21.61 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCccc
Q 008921 17 HPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKS 59 (548)
Q Consensus 17 ~PTDEELV~~YLkrKi~G~pl~~d~I~evDVY~~ePWdLP~~~ 59 (548)
|-|--||++--...-..|+|+|. +.|+-+..|-++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 66778887765566789999986 5788889999998764
Done!