BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008923
         (548 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HL9|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded
 pdb|3HL9|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded
 pdb|3HL9|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded
 pdb|3HL9|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded
 pdb|3HLB|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded, Selenomethionyl Derivative
 pdb|3HLB|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded, Selenomethionyl Derivative
 pdb|3HLB|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded, Selenomethionyl Derivative
 pdb|3HLB|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
           Unliganded, Selenomethionyl Derivative
          Length = 432

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 18/127 (14%)

Query: 219 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL--IGQRMNRETDRELKA 276
           LRE +A GHL   E  G+   + P  V++  PG +E +  A L   G+ + R T  +L+ 
Sbjct: 172 LREYMAQGHLQSAEKFGIQSRLAPPAVND--PG-AEWIYGANLDWAGKLVERATGLDLEQ 228

Query: 277 Y-----C-------LAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYG 324
           Y     C       + F  +  P  +A     TH     DG  R+  S  F A    C+G
Sbjct: 229 YLQENICAPLGITDMTFKLQQRPDMLARRADQTHRNSA-DGRLRYDDSVYFRADGEECFG 287

Query: 325 ESCLLHG 331
              +  G
Sbjct: 288 GQGVFSG 294


>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora
           (current Name, Pectobacterium Carotovorum)
 pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora
           (current Name, Pectobacterium Carotovorum)
 pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
          Length = 345

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 252 VSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFR 311
           + +S L+A LI  +M  E   E+     A   +  P P  D       G   DG      
Sbjct: 43  LEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINI 102

Query: 312 ST--LFVAAVRSCYGESCLLHGAEWM-PPKGGVTEEQMLKFMGASTNLSVLQAKELLEDE 368
           ST   FVAA  SC G     HG   +  P  G  +  +L+  G   ++S   +++ L+D 
Sbjct: 103 STASAFVAA--SC-GAKVAKHGNRSVCQPLAGSCD--LLQAFGIRLDMSAEDSRQALDDL 157

Query: 369 EIGFAY-----VSLREARPSLYSLIGLREHIKKR 397
            + F +        R A P       +R+ +K R
Sbjct: 158 NVCFLFAPQYHTGFRHAMP-------VRQQLKTR 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,321,303
Number of Sequences: 62578
Number of extensions: 607090
Number of successful extensions: 1209
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 4
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)