Query 008923
Match_columns 548
No_of_seqs 212 out of 1551
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 18:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09522 bifunctional glutamin 100.0 1.6E-81 3.4E-86 682.6 29.7 392 99-517 51-509 (531)
2 PRK14607 bifunctional glutamin 100.0 4.4E-80 9.5E-85 671.9 31.6 412 99-530 47-530 (534)
3 COG0547 TrpD Anthranilate phos 100.0 6.3E-77 1.4E-81 614.4 29.0 302 213-529 2-337 (338)
4 PRK07394 hypothetical protein; 100.0 1.5E-72 3.3E-77 584.0 30.0 292 214-518 4-323 (342)
5 PLN02641 anthranilate phosphor 100.0 5.4E-72 1.2E-76 580.1 27.5 298 214-529 3-334 (343)
6 PRK08136 glycosyl transferase 100.0 7.3E-72 1.6E-76 573.8 27.8 286 213-516 1-315 (317)
7 PRK00188 trpD anthranilate pho 100.0 3.1E-68 6.7E-73 550.6 28.7 302 213-530 1-337 (339)
8 PRK09071 hypothetical protein; 100.0 1E-67 2.2E-72 544.4 30.2 284 213-518 2-310 (323)
9 TIGR01245 trpD anthranilate ph 100.0 8.2E-67 1.8E-71 538.4 26.5 284 219-517 1-309 (330)
10 PF00591 Glycos_transf_3: Glyc 100.0 4.2E-52 9.1E-57 412.9 12.7 216 294-518 2-241 (252)
11 PRK06078 pyrimidine-nucleoside 100.0 2.8E-48 6E-53 412.3 25.3 274 213-530 1-318 (434)
12 KOG1438 Anthranilate phosphori 100.0 6.9E-48 1.5E-52 384.6 12.8 255 256-518 52-348 (373)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 7.6E-44 1.6E-48 376.0 20.7 286 216-528 2-314 (405)
14 PRK04350 thymidine phosphoryla 100.0 6.2E-42 1.4E-46 367.6 20.0 277 216-529 82-393 (490)
15 PRK05820 deoA thymidine phosph 100.0 3.6E-38 7.8E-43 335.7 26.7 211 213-439 2-228 (440)
16 TIGR02645 ARCH_P_rylase putati 100.0 1.9E-36 4.2E-41 325.2 24.3 209 215-439 86-305 (493)
17 TIGR02643 T_phosphoryl thymidi 100.0 5.1E-36 1.1E-40 318.4 21.3 209 215-439 3-227 (437)
18 TIGR03327 AMP_phos AMP phospho 100.0 4.2E-35 9.1E-40 315.1 24.1 209 215-439 87-306 (500)
19 COG0213 DeoA Thymidine phospho 99.8 1.7E-19 3.7E-24 190.0 17.1 211 213-439 2-226 (435)
20 COG0512 PabA Anthranilate/para 99.7 1.1E-17 2.3E-22 161.8 6.8 106 97-212 46-177 (191)
21 PF02885 Glycos_trans_3N: Glyc 99.7 1E-16 2.2E-21 130.3 7.8 65 214-285 1-65 (66)
22 KOG0026 Anthranilate synthase, 99.3 1.8E-12 4E-17 123.3 4.8 113 99-220 66-208 (223)
23 PLN02889 oxo-acid-lyase/anthra 99.1 3.4E-11 7.4E-16 139.0 4.4 83 98-188 133-239 (918)
24 PRK08007 para-aminobenzoate sy 99.0 4E-10 8.7E-15 108.3 4.0 101 99-209 46-171 (187)
25 PRK07649 para-aminobenzoate/an 98.7 7.8E-09 1.7E-13 100.3 3.7 107 99-210 46-172 (195)
26 KOG1224 Para-aminobenzoate (PA 98.6 1.5E-08 3.3E-13 110.2 1.8 103 99-209 67-200 (767)
27 TIGR00566 trpG_papA glutamine 98.5 7.6E-08 1.6E-12 92.6 3.7 116 100-220 47-183 (188)
28 PLN02335 anthranilate synthase 98.4 2.7E-07 5.8E-12 91.4 4.8 109 98-210 64-197 (222)
29 CHL00101 trpG anthranilate syn 98.3 4.6E-07 1E-11 87.2 3.3 107 98-209 45-172 (190)
30 PRK06774 para-aminobenzoate sy 98.2 7.2E-07 1.6E-11 85.6 3.9 107 99-210 46-176 (191)
31 PRK08857 para-aminobenzoate sy 98.2 7.5E-07 1.6E-11 85.9 3.9 120 98-222 45-189 (193)
32 PRK05670 anthranilate synthase 98.2 1.1E-06 2.4E-11 84.2 4.6 107 99-210 46-172 (189)
33 PLN02771 carbamoyl-phosphate s 98.2 5.7E-07 1.2E-11 96.8 2.6 106 99-209 284-404 (415)
34 PRK06895 putative anthranilate 98.2 1.3E-06 2.8E-11 83.9 3.6 107 98-209 45-172 (190)
35 TIGR01815 TrpE-clade3 anthrani 98.0 2.7E-06 5.8E-11 97.4 2.9 121 98-223 561-709 (717)
36 TIGR01823 PabB-fungal aminodeo 97.9 5.6E-06 1.2E-10 95.2 3.7 104 99-209 56-186 (742)
37 PRK05637 anthranilate synthase 97.9 9.4E-06 2E-10 79.9 3.2 119 99-223 47-206 (208)
38 PRK07765 para-aminobenzoate sy 97.8 2.2E-05 4.9E-10 77.3 5.0 111 94-209 44-175 (214)
39 PRK13566 anthranilate synthase 97.8 1.5E-05 3.3E-10 91.4 3.3 108 99-212 572-701 (720)
40 PRK12838 carbamoyl phosphate s 97.7 2.5E-05 5.5E-10 82.9 4.4 106 99-209 211-332 (354)
41 cd01744 GATase1_CPSase Small c 97.7 3E-05 6.6E-10 73.8 3.8 107 98-209 41-163 (178)
42 TIGR01368 CPSaseIIsmall carbam 97.7 2.6E-05 5.7E-10 82.9 3.7 107 98-209 216-338 (358)
43 PRK12564 carbamoyl phosphate s 97.6 4.5E-05 9.7E-10 81.1 4.4 107 99-210 221-343 (360)
44 cd01743 GATase1_Anthranilate_S 97.6 3.1E-05 6.6E-10 73.7 2.6 100 99-208 45-169 (184)
45 CHL00197 carA carbamoyl-phosph 97.5 9.9E-05 2.2E-09 79.2 4.7 106 99-209 236-356 (382)
46 PRK06490 glutamine amidotransf 97.2 0.00017 3.6E-09 72.5 2.2 115 94-210 50-182 (239)
47 PF00117 GATase: Glutamine ami 97.2 6.6E-05 1.4E-09 71.2 -1.1 116 94-213 40-179 (192)
48 PRK09065 glutamine amidotransf 97.1 0.00059 1.3E-08 68.3 4.9 112 99-212 57-191 (237)
49 PRK07567 glutamine amidotransf 96.7 0.004 8.7E-08 62.7 7.5 116 96-213 51-196 (242)
50 cd01745 GATase1_2 Subgroup of 96.7 0.0036 7.9E-08 60.3 6.8 79 118-211 89-175 (189)
51 PRK00758 GMP synthase subunit 96.7 0.0015 3.3E-08 62.2 3.8 103 98-209 43-164 (184)
52 PLN02347 GMP synthetase 96.5 0.0019 4.2E-08 72.2 4.0 185 99-285 56-283 (536)
53 cd01742 GATase1_GMP_Synthase T 96.4 0.0027 5.8E-08 59.9 3.7 108 99-211 44-169 (181)
54 COG0505 CarA Carbamoylphosphat 96.0 0.0075 1.6E-07 64.3 4.5 105 100-213 224-344 (368)
55 PRK11366 puuD gamma-glutamyl-g 95.7 0.0092 2E-07 60.5 3.5 88 122-209 99-225 (254)
56 TIGR00888 guaA_Nterm GMP synth 95.3 0.029 6.2E-07 53.7 5.3 104 99-209 44-167 (188)
57 cd01741 GATase1_1 Subgroup of 94.3 0.065 1.4E-06 51.0 5.0 113 94-208 44-180 (188)
58 PRK05665 amidotransferase; Pro 94.1 0.14 3.1E-06 51.7 7.2 138 95-241 57-217 (240)
59 PRK00074 guaA GMP synthase; Re 93.9 0.047 1E-06 60.8 3.6 159 98-262 48-236 (511)
60 PRK08250 glutamine amidotransf 93.8 0.053 1.1E-06 54.4 3.4 112 98-212 47-185 (235)
61 PRK13527 glutamine amidotransf 93.1 0.049 1.1E-06 52.9 1.9 123 95-219 43-193 (200)
62 PRK08136 glycosyl transferase 92.5 0.78 1.7E-05 48.5 9.9 123 98-240 8-151 (317)
63 CHL00188 hisH imidazole glycer 91.9 0.15 3.2E-06 50.6 3.6 47 97-146 39-92 (210)
64 PRK07053 glutamine amidotransf 91.7 0.46 1E-05 47.8 6.8 112 100-213 51-184 (234)
65 PRK13141 hisH imidazole glycer 91.1 0.11 2.4E-06 50.5 1.6 87 118-209 61-186 (205)
66 PRK13152 hisH imidazole glycer 90.6 0.24 5.2E-06 48.2 3.5 42 99-144 40-89 (201)
67 PRK13181 hisH imidazole glycer 89.6 0.26 5.6E-06 47.8 2.8 55 98-152 38-107 (199)
68 TIGR01855 IMP_synth_hisH imida 89.4 0.31 6.8E-06 47.3 3.2 34 119-152 60-107 (196)
69 PF04282 DUF438: Family of unk 88.6 3 6.5E-05 35.3 8.0 56 215-280 2-57 (71)
70 cd01748 GATase1_IGP_Synthase T 88.3 0.21 4.5E-06 48.2 1.1 51 100-152 40-107 (198)
71 PRK07394 hypothetical protein; 88.0 4 8.7E-05 43.6 10.6 46 98-152 10-55 (342)
72 PRK13170 hisH imidazole glycer 87.9 0.45 9.8E-06 46.3 3.2 43 99-145 41-87 (196)
73 PRK09071 hypothetical protein; 87.7 0.83 1.8E-05 48.4 5.2 55 98-169 9-63 (323)
74 cd01747 GATase1_Glutamyl_Hydro 87.4 0.6 1.3E-05 48.1 3.9 60 100-161 58-125 (273)
75 PRK05703 flhF flagellar biosyn 84.1 23 0.0005 38.9 14.2 208 215-448 142-366 (424)
76 PF02885 Glycos_trans_3N: Glyc 83.8 1.7 3.7E-05 35.3 4.2 46 107-169 12-57 (66)
77 COG0518 GuaA GMP synthase - Gl 83.3 0.95 2.1E-05 44.8 3.0 106 99-207 48-175 (198)
78 TIGR00337 PyrG CTP synthase. C 80.3 2.2 4.7E-05 48.2 4.7 50 98-152 345-396 (525)
79 PRK14004 hisH imidazole glycer 80.3 1.3 2.7E-05 44.1 2.6 47 97-146 37-90 (210)
80 TIGR03800 PLP_synth_Pdx2 pyrid 78.1 0.71 1.5E-05 44.8 0.1 121 94-217 35-180 (184)
81 COG0547 TrpD Anthranilate phos 76.4 15 0.00032 39.5 9.3 45 108-169 15-59 (338)
82 PRK09522 bifunctional glutamin 74.9 16 0.00035 41.4 9.6 47 106-169 209-255 (531)
83 PRK00188 trpD anthranilate pho 72.0 5.6 0.00012 42.2 4.9 38 106-152 12-49 (339)
84 cd01746 GATase1_CTP_Synthase T 71.8 4.9 0.00011 40.7 4.2 55 93-152 52-108 (235)
85 cd01749 GATase1_PB Glutamine A 71.2 1.8 4E-05 41.5 1.0 99 119-218 59-181 (183)
86 PRK14607 bifunctional glutamin 70.9 22 0.00048 40.1 9.6 47 107-170 205-251 (534)
87 PRK00771 signal recognition pa 66.0 1.7E+02 0.0037 32.6 14.8 155 214-382 4-188 (437)
88 PRK13146 hisH imidazole glycer 62.8 4.4 9.6E-05 39.9 1.8 35 118-152 65-113 (209)
89 TIGR03499 FlhF flagellar biosy 62.1 98 0.0021 32.0 11.5 139 215-367 116-269 (282)
90 PRK13525 glutamine amidotransf 58.8 7.3 0.00016 37.8 2.5 95 120-215 63-179 (189)
91 TIGR01245 trpD anthranilate ph 58.6 16 0.00034 38.8 5.2 38 106-152 6-43 (330)
92 PRK13143 hisH imidazole glycer 57.2 5.9 0.00013 38.6 1.6 34 118-152 60-107 (200)
93 PRK10416 signal recognition pa 57.0 1.3E+02 0.0028 31.9 11.6 110 215-334 31-152 (318)
94 KOG0370 Multifunctional pyrimi 54.5 12 0.00026 45.3 3.6 104 100-212 214-333 (1435)
95 KOG3179 Predicted glutamine sy 52.7 18 0.00039 36.9 4.1 168 77-261 40-237 (245)
96 cd01554 EPT-like Enol pyruvate 51.2 56 0.0012 34.7 7.8 98 256-355 14-128 (408)
97 PRK12724 flagellar biosynthesi 51.0 3.3E+02 0.0071 30.6 13.8 157 295-469 225-397 (432)
98 PRK12830 UDP-N-acetylglucosami 50.3 47 0.001 35.5 7.1 104 250-355 20-138 (417)
99 PRK11889 flhF flagellar biosyn 48.6 4.4E+02 0.0096 29.7 14.9 200 249-469 189-415 (436)
100 PRK14723 flhF flagellar biosyn 47.8 2.5E+02 0.0055 33.7 13.0 215 228-470 122-362 (767)
101 PRK09369 UDP-N-acetylglucosami 46.9 51 0.0011 35.3 6.8 171 250-441 20-206 (417)
102 PRK13142 hisH imidazole glycer 44.4 16 0.00036 36.1 2.4 44 98-145 38-87 (192)
103 PLN02641 anthranilate phosphor 42.5 37 0.0008 36.5 4.9 108 107-240 14-145 (343)
104 cd01555 UdpNAET UDP-N-acetylgl 41.4 58 0.0012 34.5 6.1 100 256-355 14-128 (400)
105 PRK12726 flagellar biosynthesi 40.4 3.3E+02 0.0071 30.4 11.6 136 235-384 146-300 (407)
106 TIGR01072 murA UDP-N-acetylglu 40.4 53 0.0011 35.0 5.6 98 257-355 26-138 (416)
107 PF11829 DUF3349: Protein of u 39.2 57 0.0012 29.3 4.7 67 213-285 23-89 (96)
108 TIGR03481 HpnM hopanoid biosyn 36.6 90 0.0019 30.9 6.2 65 215-286 34-98 (198)
109 cd01556 EPSP_synthase EPSP syn 34.1 1.6E+02 0.0035 31.0 8.0 105 249-355 8-127 (409)
110 COG0493 GltD NADPH-dependent g 32.4 6.7E+02 0.015 28.2 12.8 205 215-446 42-292 (457)
111 PRK10867 signal recognition pa 29.3 8.4E+02 0.018 27.3 14.4 165 214-392 8-210 (433)
112 PRK12723 flagellar biosynthesi 28.8 6.8E+02 0.015 27.5 11.8 157 227-395 105-281 (388)
113 cd00287 ribokinase_pfkB_like r 28.0 98 0.0021 28.6 4.7 16 316-331 42-57 (196)
114 COG2313 IndA Uncharacterized e 28.0 4.3E+02 0.0094 28.1 9.5 141 268-447 75-233 (310)
115 smart00845 GatB_Yqey GatB doma 25.9 1.1E+02 0.0024 28.6 4.6 61 213-284 42-103 (147)
116 cd08783 Death_MALT1 Death doma 25.4 3.8E+02 0.0082 24.3 7.5 62 213-283 23-86 (97)
117 COG2854 Ttg2D ABC-type transpo 25.2 1.1E+02 0.0024 31.0 4.6 66 215-287 37-105 (202)
118 COG2089 SpsE Sialic acid synth 25.0 9.4E+02 0.02 26.4 12.4 158 294-455 14-189 (347)
119 PLN02327 CTP synthase 24.4 83 0.0018 36.2 4.0 54 93-152 360-415 (557)
120 TIGR01356 aroA 3-phosphoshikim 23.9 2.2E+02 0.0047 30.3 6.9 104 250-355 7-123 (409)
121 COG0563 Adk Adenylate kinase a 23.9 1.7E+02 0.0037 28.3 5.6 96 296-397 3-106 (178)
122 PRK02427 3-phosphoshikimate 1- 23.1 1.8E+02 0.0039 31.1 6.2 101 250-355 21-138 (435)
123 PRK14806 bifunctional cyclohex 23.0 2.4E+02 0.0052 32.8 7.5 101 255-355 324-440 (735)
124 PRK10444 UMP phosphatase; Prov 22.8 5.6E+02 0.012 26.0 9.3 122 295-438 5-132 (248)
125 COG0540 PyrB Aspartate carbamo 22.4 5.3E+02 0.012 27.9 9.3 102 323-440 71-185 (316)
126 TIGR02644 Y_phosphoryl pyrimid 22.2 89 0.0019 34.6 3.7 203 105-332 9-235 (405)
127 PF05494 Tol_Tol_Ttg2: Toluene 21.8 1.2E+02 0.0025 28.7 4.0 92 216-314 6-108 (170)
128 PHA00438 hypothetical protein 21.7 1.3E+02 0.0028 26.3 3.7 49 228-283 32-80 (81)
129 PRK14974 cell division protein 21.6 6E+02 0.013 27.3 9.6 101 249-354 76-198 (336)
130 PF08069 Ribosomal_S13_N: Ribo 21.4 1.2E+02 0.0026 25.1 3.3 28 227-261 27-54 (60)
131 PRK15117 ABC transporter perip 21.0 3E+02 0.0066 27.5 6.9 64 216-286 36-102 (211)
132 PLN02338 3-phosphoshikimate 1- 20.4 2.2E+02 0.0047 31.0 6.1 99 253-355 23-147 (443)
133 PRK11860 bifunctional 3-phosph 20.4 2.4E+02 0.0053 32.7 6.9 104 250-355 23-141 (661)
No 1
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.6e-81 Score=682.64 Aligned_cols=392 Identities=16% Similarity=0.182 Sum_probs=348.7
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (548)
.|++||||+.|. +++.+.+. ++++..++|++| |+|||.|+.+||+.+.|. ..+.||+.+. +.+.+..+|
T Consensus 51 ~IIlSpGPg~p~---d~~~~~~i-~~~~~~~iPILGIClG~QlLa~a~GG~V~~~-~~~~~G~~~~-----i~~~~~~lf 120 (531)
T PRK09522 51 VLMLSPGPGVPS---EAGCMPEL-LTRLRGKLPIIGICLGHQAIVEAYGGYVGQA-GEILHGKASS-----IEHDGQAMF 120 (531)
T ss_pred EEEEcCCCCChh---hCCCCHHH-HHHHhcCCCEEEEcHHHHHHHHhcCCEEEeC-CceeeeeEEE-----EeecCCccc
Confidence 699999999997 55555555 777888999999 999999999999999997 7788887542 222222222
Q ss_pred -----------------hhCCCceEEEeCCCCCccccCCCC----CCCCCCCC---------------------CccCcH
Q 008923 178 -----------------RALPPDVIFIADPEGSIMGGGGSI----GPHYSGND---------------------PREMRL 215 (548)
Q Consensus 178 -----------------~~lp~~~~f~a~p~g~iMg~~~~~----g~~~~~~~---------------------~~~~~~ 215 (548)
..+|+.+.++|..||.+|+++|+. |++|.|.+ +++..|
T Consensus 121 ~~~~~~~~v~~~Hs~~v~~lP~~l~vlA~sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~ 200 (531)
T PRK09522 121 AGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTL 200 (531)
T ss_pred cCCCCCcEEEEehheecccCCCCcEEEEecCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCCH
Confidence 468999999998899999999965 66776553 355679
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Q 008923 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 295 (548)
Q Consensus 216 ~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~~ 295 (548)
+++|+|+..|++||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++.++...
T Consensus 201 ~~~l~~~~~~~~Lt~eea~~~~~~il-------~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~~~~ 273 (531)
T PRK09522 201 QPILEKLYQAQTLSQQESHQLFSAVV-------RGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLF 273 (531)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 99999999999999999999999999 99999999999999999999999999999999999998775443347
Q ss_pred eeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEe
Q 008923 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 375 (548)
Q Consensus 296 vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL 375 (548)
+|+|||||||++|||+||+ +|+|+|++|+||+|||||++|||+|+ +|+||+|||+++++++++.++|++ +||+||
T Consensus 274 iD~~gtGgdg~~t~nist~-aa~v~A~~Gv~V~kHG~r~~ss~~Gs--advlealGi~~~~~~~~~~~~l~~--~g~~fl 348 (531)
T PRK09522 274 ADIVGTGGDGSNSINISTA-SAFVAAACGLKVAKHGNRSVSSKSGS--SDLLAAFGINLDMNADKSRQALDE--LGVCFL 348 (531)
T ss_pred ccccCCCCCCCCCcccHHH-HHHHHHhCCCcEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEE
Confidence 9999999999999999999 99999999999999999999999999 999999999999999999999999 999999
Q ss_pred cccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc--c
Q 008923 376 SLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA--L 453 (548)
Q Consensus 376 ~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~--i 453 (548)
|||.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++++|+++++|||| +|+ +
T Consensus 349 ~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G-~G~DEi 424 (531)
T PRK09522 349 FAPKYHTGFRHAMPVRQQLKTRTLFNVLGPL---INPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS-GGMDEV 424 (531)
T ss_pred EhhHhCHHHHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC-CCcccc
Confidence 9999999999999999999999999999986 899999999999999999999999999999999999999 786 9
Q ss_pred cccCCeeEEEecCCceeEEeecCccCCCCCC----------cCCccHHH------------HHHHhcHHHHHHHhcccCc
Q 008923 454 SMTTRLRSVNASKGLPVNYCSGFRSLNVEST----------FEGDGLYN------------LARLLNCLKFMYYISSINI 511 (548)
Q Consensus 454 S~~g~T~v~el~~G~~i~y~~~~~~~~~~~~----------~en~~il~------------~~~~LNAAaaLyv~g~a~~ 511 (548)
|++++|+|+++++|++.+|++++++++++.. .+|+++++ .++++|||++||+.|. ++
T Consensus 425 s~~~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~~g~-~~ 503 (531)
T PRK09522 425 SLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGH-ED 503 (531)
T ss_pred CCCCceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHHcCC-CC
Confidence 9999999999999977789999888886533 24544332 4566999999999996 99
Q ss_pred hhhhhh
Q 008923 512 VTSNLV 517 (548)
Q Consensus 512 l~~g~~ 517 (548)
|++|+.
T Consensus 504 l~~g~~ 509 (531)
T PRK09522 504 LQANAQ 509 (531)
T ss_pred HHHHHH
Confidence 999984
No 2
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.4e-80 Score=671.87 Aligned_cols=412 Identities=20% Similarity=0.295 Sum_probs=357.9
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhh--
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTF-- 172 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~---~~~~~-- 172 (548)
.|++||||..|. +++..++. ++.+...+|++| |+|||.|+.+||+.+.+. ..+.||++++-... .+..+
T Consensus 47 ~vIlsgGP~~p~---~~~~~~~l-i~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~-~~~~~G~~~~v~~~~~~lf~~~~~ 121 (534)
T PRK14607 47 HIVISPGPGRPE---EAGISVEV-IRHFSGKVPILGVCLGHQAIGYAFGGKIVHA-KRILHGKTSPIDHNGKGLFRGIPN 121 (534)
T ss_pred EEEECCCCCChh---hCCccHHH-HHHhhcCCCEEEEcHHHHHHHHHcCCeEecC-CccccCCceeEEECCCcchhcCCC
Confidence 599999999997 55666665 777878899999 999999999999999998 67788887632111 11111
Q ss_pred ------hhHH-h--hhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCC-----------------ccCcHHHHHHH
Q 008923 173 ------WPLL-M--RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP-----------------REMRLVGALRE 221 (548)
Q Consensus 173 ------~~~l-~--~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~-----------------~~~~~~~~L~k 221 (548)
|-.+ + ..||+++.+++ +++|.|||++|+. |++|.|.+. .++.|+++|++
T Consensus 122 ~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~~~~~~~~~i~~ 201 (534)
T PRK14607 122 PTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQREEIDIKSYLKK 201 (534)
T ss_pred CcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhhccCCHHHHHHH
Confidence 1111 1 25899999998 8999999999976 778877642 35779999999
Q ss_pred HhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCCCeeEEcC
Q 008923 222 VLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGE 301 (548)
Q Consensus 222 L~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GT 301 (548)
+.+|++||+||++++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++.+..+.+|+|||
T Consensus 202 l~~g~~Lt~~ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~~~~~D~~gt 274 (534)
T PRK14607 202 LVEGEDLSFEEAEDVMEDIT-------DGNATDAQIAGFLTALRMKGETADELAGFASVMREKSRHIPAPSPRTVDTCGT 274 (534)
T ss_pred hccCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCceEEccC
Confidence 99999999999999999999 99999999999999999999999999999999999998876543357999999
Q ss_pred CCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEecccccc
Q 008923 302 PYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREAR 381 (548)
Q Consensus 302 GGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL~Ap~~h 381 (548)
||||++|||+||+ +|+|+|++|+||+|||||++|||+|| +|+||+||++++++++++.+++++ .||+|||||.||
T Consensus 275 ggdg~~t~nist~-~a~v~A~~G~~V~kHG~r~~ss~~Gs--advle~lGv~~~~~~~~~~~~l~~--~g~~fl~ap~~~ 349 (534)
T PRK14607 275 GGDGFGTFNISTT-SAFVVAAAGVPVAKHGNRAVSSKSGS--ADVLEALGVKLEMTPEEAASVLRE--TGFSFLFAPLFH 349 (534)
T ss_pred CCCCCCccccHHH-HHHHHHhCCCcEEEECCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeeccccC
Confidence 9999999999999 99999999999999999999999999 999999999999999999999999 999999999999
Q ss_pred hhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc--ccccCCe
Q 008923 382 PSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA--LSMTTRL 459 (548)
Q Consensus 382 Pamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~--iS~~g~T 459 (548)
|+|++++++|++||+||++|+.+++ +||+++++||+|||||+|.++|+++++.+|.++++||||.||+ +|++++|
T Consensus 350 p~l~~~~~~R~~Lg~rTifN~lgpL---~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G~~G~dE~s~~~~t 426 (534)
T PRK14607 350 PAMKHAAPARRELGIRTAFNLLGPL---TNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSGIDGYDEISTCGPT 426 (534)
T ss_pred HHHHHHHHHHHHhCCCcHHHhHHhc---cCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccCCCce
Confidence 9999999999999999999999886 8999999999999999999999999999999999999999997 8999999
Q ss_pred eEEEecCCceeEEeecCccCCCCC----------CcCCccHH------------HHHHHhcHHHHHHHhcccCchhhhh-
Q 008923 460 RSVNASKGLPVNYCSGFRSLNVES----------TFEGDGLY------------NLARLLNCLKFMYYISSINIVTSNL- 516 (548)
Q Consensus 460 ~v~el~~G~~i~y~~~~~~~~~~~----------~~en~~il------------~~~~~LNAAaaLyv~g~a~~l~~g~- 516 (548)
++|++++|.+.+|.++++++++.. ..+|++++ ..++++|||++||++|+++++++|+
T Consensus 427 ~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~lnaA~~L~~~g~~~s~~eg~~ 506 (534)
T PRK14607 427 QILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVALNAGAALYLVGEADSIKEGVG 506 (534)
T ss_pred EEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999997778998887777542 22343322 2345599999999999999999776
Q ss_pred ----------hhhccccccccCcc
Q 008923 517 ----------VLQGCHARVSTSRS 530 (548)
Q Consensus 517 ----------~~~~~~~~~~~~~~ 530 (548)
.++++...++.|+.
T Consensus 507 ~a~~~i~sG~a~~~l~~~~~~~~~ 530 (534)
T PRK14607 507 KALDLIDDGRAYKKLEEVMDLSKT 530 (534)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHh
Confidence 55667777776654
No 3
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-77 Score=614.35 Aligned_cols=302 Identities=23% Similarity=0.291 Sum_probs=278.4
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
++++++|+|+.+|++|+++||+++|+.|| +|+++|+|+||||++||+||||++||+||++||++++.+++++.
T Consensus 2 ~~~~~~l~kl~~g~~L~~~eA~~l~~~il-------~g~~~~~qi~A~L~Alr~Kget~eEi~G~~~am~~~~~~~~~p~ 74 (338)
T COG0547 2 MDLRKILKKLGRGRDLDREEARELFKAIL-------SGEASPAQIGAFLTALRIKGETPEEIAGFAEAMREHAPKLPVPA 74 (338)
T ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccCCCCC
Confidence 56899999999999999999999999999 99999999999999999999999999999999999888887765
Q ss_pred CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCce
Q 008923 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (548)
Q Consensus 293 ~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~Gf 372 (548)
...+|+|||||||++||||||+ +|||+|++|+||+|||||++|||+|| +|+||+|||+++++|++++++|++ .||
T Consensus 75 ~~~vDi~GTGGDg~~T~NiSt~-aA~v~A~~Gv~VaKHGnrs~sSksGs--aDvleaLGv~l~~~~e~~~~~l~~--~g~ 149 (338)
T COG0547 75 ADPVDIVGTGGDGANTINISTA-AAIVAAAAGVPVAKHGNRSVSSKSGS--ADVLEALGVNLELSPEQAARALEE--TGI 149 (338)
T ss_pred CCCCCeecCCCCCCCcccchHH-HHHHHHhCCCcEEeECCCCCCCCCcH--HHHHHHcCCCCCCCHHHHHHHHHh--cCe
Confidence 4448999999999999999999 99999999999999999999999999 999999999999999999999999 999
Q ss_pred EEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc
Q 008923 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (548)
Q Consensus 373 aFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~ 452 (548)
+|||||.|||+|++++++|++||+||++|..+++ +||+++++||+|||||+|.+++|++|+++|+++++||||.||+
T Consensus 150 ~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL---~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~~Gl 226 (338)
T COG0547 150 GFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPL---LNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGLEGL 226 (338)
T ss_pred EEEEccccCHHHHHHHHHHHHcCCCchHHhhccc---cCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECCCCc
Confidence 9999999999999999999999999999999986 8999999999999999999999999999999999999999997
Q ss_pred --ccccCCeeEEEecCCceeEEeecCccCCCCC----------CcCCccHHH-----------HHHHhcHHHHHHHhccc
Q 008923 453 --LSMTTRLRSVNASKGLPVNYCSGFRSLNVES----------TFEGDGLYN-----------LARLLNCLKFMYYISSI 509 (548)
Q Consensus 453 --iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~----------~~en~~il~-----------~~~~LNAAaaLyv~g~a 509 (548)
++++++|+|+++++|.+..|++.+++++++. +.||+++++ .++++|||++||++|.+
T Consensus 227 DE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~~g~a 306 (338)
T COG0547 227 DEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYAAGKA 306 (338)
T ss_pred ccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcCcc
Confidence 9999999999999998889999888887664 336665443 45669999999999999
Q ss_pred Cchhhhh-----------hhhccccccccCc
Q 008923 510 NIVTSNL-----------VLQGCHARVSTSR 529 (548)
Q Consensus 510 ~~l~~g~-----------~~~~~~~~~~~~~ 529 (548)
+++++|+ .++++|.++..++
T Consensus 307 ~~l~eg~~~A~~~i~sG~a~~~l~~l~~~~~ 337 (338)
T COG0547 307 ESLKEGIALALEAIDSGAALEKLEELVAFSK 337 (338)
T ss_pred CCHHHHHHHHHHHHhCcHHHHHHHHHHHHhc
Confidence 9988665 4566666665543
No 4
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-72 Score=584.02 Aligned_cols=292 Identities=26% Similarity=0.306 Sum_probs=268.1
Q ss_pred cHHHHHHHHhcCC----CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCC
Q 008923 214 RLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP 289 (548)
Q Consensus 214 ~~~~~L~kL~~G~----~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~ 289 (548)
+|+++|++|.+|+ +||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++
T Consensus 4 ~~~~~i~~l~~g~~~~~~Lt~eea~~~~~~il-------~g~~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~~ 76 (342)
T PRK07394 4 RFRELLKKVGSGEHTSKDLTREEAADALKLML-------LGEATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKLQ 76 (342)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCCC
Confidence 5899999999995 999999999999999 99999999999999999999999999999999999998776
Q ss_pred CCC-CCCeeEEcCCCCCC-CccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC-CHHHHHHHHH
Q 008923 290 VAD-VKSLTHYGEPYDGN-TRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL-SVLQAKELLE 366 (548)
Q Consensus 290 ~~~-~~~vDi~GTGGDG~-~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~l-spe~a~~~Le 366 (548)
.+. ...+|+|||||||+ +|||+||+ +|+|+|++|+||+|||||++|||+|.|.+|+||+|||+++. +++++.++|+
T Consensus 77 ~~~~~~~~d~~GtggDG~~~t~NiSt~-aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~ 155 (342)
T PRK07394 77 SPSNQRPPIVFGMPYDGRSRTAPIYPL-TALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFE 155 (342)
T ss_pred CCCCCCceeEEeCCCCCCCCCcccHHH-HHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 432 24789999999996 99999999 99999999999999999999999996669999999999998 9999999999
Q ss_pred hccCceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcc-cCCCeEEEeecCCCchHHHHHHHHHcCCCeEEE
Q 008923 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA-QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV 445 (548)
Q Consensus 367 e~~~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNP-a~a~~qViGVfh~~~~e~~Aeal~~lG~~~alV 445 (548)
+ .||+|||||.|||+|++++++|++||+||++|+.+++ +|| +++++||+||||++|.++|+++++.+|.++++|
T Consensus 156 ~--~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL---~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~v 230 (342)
T PRK07394 156 Q--TGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELI---WTPHQGDHHLVSGFVHPPTEARAWEALELRGETNFTT 230 (342)
T ss_pred H--cCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCeEEE
Confidence 9 9999999999999999999999999999999999986 889 688999999999999999999999999999999
Q ss_pred EEcCCCc--ccccCCeeEEEecCCceeEEeecCccCCCCC-------CcCCccHHH-----------HHHHhcHHHHHHH
Q 008923 446 VKGEEGA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVES-------TFEGDGLYN-----------LARLLNCLKFMYY 505 (548)
Q Consensus 446 V~G~eG~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~-------~~en~~il~-----------~~~~LNAAaaLyv 505 (548)
|||.||+ ++++++|.++++++|.+.+|+++++++++.. +.+|+++++ .++++|||++||+
T Consensus 231 v~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~d~G~~~~~l~~~~~~~na~~~~~vl~G~~~~~~~~v~lNaa~~L~~ 310 (342)
T PRK07394 231 VKGLEGSCDLPISRTAIIGRVQNGHFERLILHPRDYGCGGKDVPWESTEEWLEQAQAALNGEPGPLTQALIWNGGFYLWR 310 (342)
T ss_pred EEcCCCceeccCCCCeEEEEEcCCeEEEEEECHHHcCCCcccCCCCCHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHH
Confidence 9999997 8999999999999997778999888887643 234554332 3556999999999
Q ss_pred hcccCchhhhhhh
Q 008923 506 ISSINIVTSNLVL 518 (548)
Q Consensus 506 ~g~a~~l~~g~~~ 518 (548)
+|+++++++|+.+
T Consensus 311 ~g~~~s~~eg~~~ 323 (342)
T PRK07394 311 AGISSSLEEGIEK 323 (342)
T ss_pred cCCCCCHHHHHHH
Confidence 9999999998843
No 5
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=5.4e-72 Score=580.07 Aligned_cols=298 Identities=17% Similarity=0.214 Sum_probs=272.9
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCC
Q 008923 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADV 293 (548)
Q Consensus 214 ~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~ 293 (548)
.|+++|+++.+|++||+||++++|+.|| +| ++|+|+||||++||+||||+|||+||++||++++.+++.. .
T Consensus 3 ~~~~~l~~l~~g~~Lt~eEa~~~~~~il-------~~-~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~-~ 73 (343)
T PLN02641 3 SFRQLIESLIQGTDLTEEEAEAALDFLL-------DD-ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGL-V 73 (343)
T ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-C
Confidence 4799999999999999999999999999 77 9999999999999999999999999999999999877642 3
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceE
Q 008923 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 373 (548)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~Gfa 373 (548)
+.+|||||||||++|||+||+ +|+|+|++|++|+|||||++||++|| +|+||+|||+++++++++.++|++ .||+
T Consensus 74 ~~~D~~gtGGdg~~t~nist~-aa~v~A~~G~~V~kHGnr~~ss~~Gs--aDvLeaLGi~~~~~~~~~~~~l~~--~g~~ 148 (343)
T PLN02641 74 DAVDIVGTGGDGANTVNISTG-SSILAAACGAKVAKQGNRSSSSACGS--ADVLEALGVAIDLGPEGVKRCVEE--VGIG 148 (343)
T ss_pred CCCceeCCCCCCCCccccHHH-HHHHHHhCCCeEEEeCCCCCCCccCH--HHHHHHcCCCCCCCHHHHHHHHHh--cCcE
Confidence 479999999999999999999 99999999999999999999999999 999999999999999999999999 9999
Q ss_pred EecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc-
Q 008923 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA- 452 (548)
Q Consensus 374 FL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~- 452 (548)
|||+|.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++++|+++++|||| +|+
T Consensus 149 fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL---~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G-~G~D 224 (343)
T PLN02641 149 FMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPM---LNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHS-EGLD 224 (343)
T ss_pred EEechhhCHHHHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEec-CCCC
Confidence 999999999999999999999999999999986 899999999999999999999999999999999999999 564
Q ss_pred -ccccCCeeEEEecCCceeEEeecCccCCCC----------CCcCCccHHH-----------HHHHhcHHHHHHHhcccC
Q 008923 453 -LSMTTRLRSVNASKGLPVNYCSGFRSLNVE----------STFEGDGLYN-----------LARLLNCLKFMYYISSIN 510 (548)
Q Consensus 453 -iS~~g~T~v~el~~G~~i~y~~~~~~~~~~----------~~~en~~il~-----------~~~~LNAAaaLyv~g~a~ 510 (548)
+|++++|++|++.+|.+.+|++.++++++. +..+|+.+++ .++++|||++||++|+++
T Consensus 225 Eis~~g~t~v~~~~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~~~~~~d~v~lNaa~~L~~~g~~~ 304 (343)
T PLN02641 225 EMSPLGPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGEKGAIADALILNAAAALLVSGLAK 304 (343)
T ss_pred ccccCcceEEEEEeCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999777899988888765 2234544432 345699999999999999
Q ss_pred chhhhh-----------hhhccccccccCc
Q 008923 511 IVTSNL-----------VLQGCHARVSTSR 529 (548)
Q Consensus 511 ~l~~g~-----------~~~~~~~~~~~~~ 529 (548)
++++|+ .+++++..++.|+
T Consensus 305 sl~eg~~~A~~~i~sG~a~~~l~~~~~~~~ 334 (343)
T PLN02641 305 TLAEGVALARETQESGKAIKTLDSWIKISQ 334 (343)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 998877 5567777777665
No 6
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=7.3e-72 Score=573.77 Aligned_cols=286 Identities=17% Similarity=0.179 Sum_probs=263.8
Q ss_pred CcHHHHHHHHhcC----CCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCC
Q 008923 213 MRLVGALREVLAG----GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (548)
Q Consensus 213 ~~~~~~L~kL~~G----~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i 288 (548)
|+|+++|++|.+| ++||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.++
T Consensus 1 ~~~~~~i~~l~~G~~~~~~Lt~eEA~~~~~~il-------~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~ 73 (317)
T PRK08136 1 MDYAKIIKEIGRGKNGARDLDRDTARALYGAML-------DGRVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPL 73 (317)
T ss_pred CCHHHHHHHHHCCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcC
Confidence 6789999999999 8999999999999999 9999999999999999999999999999999999999887
Q ss_pred CCCC-C-CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHH
Q 008923 289 PVAD-V-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLE 366 (548)
Q Consensus 289 ~~~~-~-~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Le 366 (548)
+.+. . ..+||||||||++ |||+||+ +|+|+|++|+||+|||||++|||+|| +||||+|||+++++|++++++|+
T Consensus 74 ~~~~~~~~~iD~~gtgGd~~-t~nist~-aA~vlA~~G~~V~kHGnr~vssk~gs--advleaLGi~~~~~~~~~~~~l~ 149 (317)
T PRK08136 74 TPPAGRPMPVVIPSYNGARK-QANLTPL-LALLLAREGVPVLVHGVSEDPTRVTS--AEIFEALGIPPTLHADQAQAKLA 149 (317)
T ss_pred CCCCCCCceEEeCCCCCCCC-CcChHHH-HHHHHHHCCCeEEEECCCCCCCcccH--HHHHHHcCCCCCCCHHHHHHHHH
Confidence 6542 2 3799999999976 9999999 99999999999999999999999999 99999999999999999999999
Q ss_pred hccCceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcc--cCCCeEEEeecCCCchHHHHHHHHHcCCCeEE
Q 008923 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGL 444 (548)
Q Consensus 367 e~~~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNP--a~a~~qViGVfh~~~~e~~Aeal~~lG~~~al 444 (548)
+ .||+|||||.|||+|++++++|++||+||++|+.+++ +|| +++++||+||||++|.++|+++++++|. +++
T Consensus 150 ~--~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL---~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 150 E--GQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKL---ATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred h--cCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9 9999999999999999999999999999999999997 888 6899999999999999999999999998 999
Q ss_pred EEEcCCCc--ccccCCeeEEEecCCceeEEeecCccCCCCC---------CcCCccHHH----------HHHHhcHHHHH
Q 008923 445 VVKGEEGA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVES---------TFEGDGLYN----------LARLLNCLKFM 503 (548)
Q Consensus 445 VV~G~eG~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~---------~~en~~il~----------~~~~LNAAaaL 503 (548)
||||.||+ ++++++|+++++++|... |..++++++++. +.+|+++++ .++++|||++|
T Consensus 224 vv~G~~G~dE~s~~~~t~v~~~~~g~~~-~~~~p~~~g~~~~~~~~~~~~~~~na~~~~~vL~G~~~~~d~v~lNaa~~l 302 (317)
T PRK08136 224 LMRGTEGEVYANPRRCPQIDWIHDGGCR-VLVERQSGSADEPPELPAAKDAATTAAWIERVLAGEVPVPESIARQVACCL 302 (317)
T ss_pred EEEcCCCceeecCCCCceEEEEeCCEEE-EEECHHHcCCccCchhccCCCHHHHHHHHHHHHCCCCCcchHHHHHHHHHH
Confidence 99999997 999999999999999544 888877765543 335655433 45679999999
Q ss_pred HHhcccCchhhhh
Q 008923 504 YYISSINIVTSNL 516 (548)
Q Consensus 504 yv~g~a~~l~~g~ 516 (548)
|++|++++|++|+
T Consensus 303 ~~~g~~~~~~~g~ 315 (317)
T PRK08136 303 VAAGEAATIEDGL 315 (317)
T ss_pred HHcCccCCHHHhh
Confidence 9999999999997
No 7
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.1e-68 Score=550.58 Aligned_cols=302 Identities=22% Similarity=0.309 Sum_probs=275.0
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
|+|+++|+++.+|++||+||++++|+.|+ +|+++|+|+||||++||+||||+|||+||++||+++..+++.++
T Consensus 1 ~~~~~~i~~l~~g~~Lt~~Ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~ 73 (339)
T PRK00188 1 MTMKELLEKLVEGEDLSEEEAEELMDAIM-------SGEATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPD 73 (339)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC
Confidence 67899999999999999999999999999 99999999999999999999999999999999999998776543
Q ss_pred CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCce
Q 008923 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (548)
Q Consensus 293 ~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~Gf 372 (548)
+.+|+|||||||+++||+||+ +|+|+|++|++|+|||||++|||+|+ +|+||+||+++..+++++.++|++ .||
T Consensus 74 -~~iDi~gtggdg~~t~nis~~-~a~vlA~~G~~V~kHG~~~~~s~~Gs--advLe~lGi~~~~~~~~~~~~l~~--~g~ 147 (339)
T PRK00188 74 -DAVDIVGTGGDGANTFNISTA-AAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLSPEQVARCLEE--VGI 147 (339)
T ss_pred -CCCcccCCCCCCCCccchHHH-HHHHHHhCCCEEEEECCCCCCCCcCH--HHHHHHcCCCCCCCHHHHHHHHHH--cCc
Confidence 589999999999999999999 99999999999999999999999999 999999999999999999999999 999
Q ss_pred EEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc
Q 008923 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (548)
Q Consensus 373 aFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~ 452 (548)
+|+++|.|||+|++++++|++||+||++|+.+++ +||++++++|+||||++|.++|+++++.+|+++++||||.||+
T Consensus 148 ~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L---~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~~G~ 224 (339)
T PRK00188 148 GFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPL---TNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGSDGL 224 (339)
T ss_pred EEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 9999999999999999999999999999999996 8999999999999999999999999999999999999999997
Q ss_pred --ccccCCeeEEEecCCceeEEeecCccCCCCCCc----------CCccHH------------HHHHHhcHHHHHHHhcc
Q 008923 453 --LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTF----------EGDGLY------------NLARLLNCLKFMYYISS 508 (548)
Q Consensus 453 --iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~~~----------en~~il------------~~~~~LNAAaaLyv~g~ 508 (548)
+++.++|++|++++|+...|.+.++++++.... +|++++ ...+++|+|++||++|+
T Consensus 225 dE~~~~~~t~v~~~~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~G~~~~~~~~~v~lnaA~~L~~~g~ 304 (339)
T PRK00188 225 DEISLTGPTTVAELKDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQGKGPGAARDAVLLNAAAALYVAGK 304 (339)
T ss_pred eeecCCCCEEEEEEcCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 899999999999999766789888877754321 232221 12344999999999999
Q ss_pred cCchhhhh-----------hhhccccccccCcc
Q 008923 509 INIVTSNL-----------VLQGCHARVSTSRS 530 (548)
Q Consensus 509 a~~l~~g~-----------~~~~~~~~~~~~~~ 530 (548)
++++++|+ ++++++..++.+++
T Consensus 305 ~~s~~e~~~~A~~~i~sG~a~~~l~~~~~~~~~ 337 (339)
T PRK00188 305 ADDLKEGVELAREAIDSGAALAKLEELVAFSQE 337 (339)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhcc
Confidence 99999887 55667777666543
No 8
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=1e-67 Score=544.43 Aligned_cols=284 Identities=23% Similarity=0.272 Sum_probs=259.3
Q ss_pred CcHHHHHHHHhcCC----CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCC
Q 008923 213 MRLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (548)
Q Consensus 213 ~~~~~~L~kL~~G~----~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i 288 (548)
|+|+++|+++++|+ +||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.++
T Consensus 2 ~~~~~~ik~vg~gk~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~ 74 (323)
T PRK09071 2 HPFAEYIRILGKGKRGRRSLTREEARQAMGMIL-------DGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAP 74 (323)
T ss_pred CcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 67999999999998 999999999999999 9999999999999999999999999999999999999877
Q ss_pred CCCCCCCeeE-EcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCC-CcHHHHHHhCCCCCCCCHHHHHHHHH
Q 008923 289 PVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGG-VTEEQMLKFMGASTNLSVLQAKELLE 366 (548)
Q Consensus 289 ~~~~~~~vDi-~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksG-St~ADvLEaLGi~i~lspe~a~~~Le 366 (548)
+.+ ..+|| ||||+|+..++| |+ +|+|+|++|+||+|||||++|||+| | +|+||+|||+++.+++++.++|+
T Consensus 75 ~~~--~~iD~~~gtG~d~~~~~~--~~-~a~vlA~~G~~V~kHGnr~~ssk~g~s--aDvLeaLGv~~~~~~~~~~~~l~ 147 (323)
T PRK09071 75 PLA--VDLDWPSYAGKRRHLPWY--LL-AAKLLAQNGYRVLLHGGGGHTAGRLYT--EQLLEALGIPIARSWQEAEQALE 147 (323)
T ss_pred CCC--CceecCCcCCCCCCcccH--HH-HHHHHHHCCCeEEEECCCCCCCCcccH--HHHHHHCCCCCCCCHHHHHHHHH
Confidence 633 35999 999999888887 46 9999999999999999999999996 8 99999999999999999999999
Q ss_pred hccCceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEE
Q 008923 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVV 446 (548)
Q Consensus 367 e~~~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV 446 (548)
+ .||+|||||.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++++|+++++||
T Consensus 148 ~--~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv 222 (323)
T PRK09071 148 E--HNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARL---LNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVF 222 (323)
T ss_pred h--cCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHH---cCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEE
Confidence 9 9999999999999999999999999999999999986 8999999999999999999999999999999999999
Q ss_pred EcCCCc--ccccCCeeEEEecCCceeEEeecCccCCCC----CCcCCccHH-------------HHHHHhcHHHHHHHhc
Q 008923 447 KGEEGA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVE----STFEGDGLY-------------NLARLLNCLKFMYYIS 507 (548)
Q Consensus 447 ~G~eG~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~----~~~en~~il-------------~~~~~LNAAaaLyv~g 507 (548)
||.||+ +|++++|++|++++|.+.+|.+ ++++.. +..+|++++ +.++++|||++|| .|
T Consensus 223 ~G~~G~dE~s~~~~t~v~~~~~g~i~~~~~--~~~g~~~~~~~~~~na~~~~~vl~G~~~~~~~~d~v~~Naa~aL~-~g 299 (323)
T PRK09071 223 KGEGGESERNPDVSTTLYGSRNGEAWDEEW--PALSEERHVKPEELDPEQLLAVWRGEEEDEYGENAVIATMALALW-RG 299 (323)
T ss_pred ECCCCceeecCCCceEEEEEcCCeEEEEEe--cccccccCCCCcccCHHHHHHHhCCCCCchHHHHHHHHHHHHHHH-cC
Confidence 999997 9999999999999997767776 233332 333554432 2466799999999 99
Q ss_pred ccCchhhhhhh
Q 008923 508 SINIVTSNLVL 518 (548)
Q Consensus 508 ~a~~l~~g~~~ 518 (548)
+++++++|+.+
T Consensus 300 ~~~sl~eg~~~ 310 (323)
T PRK09071 300 LNQSREEAFEK 310 (323)
T ss_pred CCCCHHHHHHH
Confidence 99999999943
No 9
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=8.2e-67 Score=538.42 Aligned_cols=284 Identities=19% Similarity=0.266 Sum_probs=261.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCC-CCCCee
Q 008923 219 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA-DVKSLT 297 (548)
Q Consensus 219 L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~-~~~~vD 297 (548)
|+++.+|++||+||++++|+.|| +|+++|.|+||||++||+||||++|++||++||+++..+++.+ ....+|
T Consensus 1 l~~~~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD 73 (330)
T TIGR01245 1 LEKLIDGKDLSRDEAEQLMKEIM-------SGEASPAQIAAILAALRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVD 73 (330)
T ss_pred CchhhcCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCccc
Confidence 46889999999999999999999 9999999999999999999999999999999999999887653 345799
Q ss_pred EEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEecc
Q 008923 298 HYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL 377 (548)
Q Consensus 298 i~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL~A 377 (548)
+|||||||++|||+||+ +|+|+|++|+||+|||||++||++|+ +|+||+|||+++.+++++.++|++ .||+|+++
T Consensus 74 ~~gtggdg~~t~nist~-~a~vlA~~G~~V~kHG~r~~~s~~Gs--~d~le~LGi~~~~s~~~~~~~l~~--~g~~f~~~ 148 (330)
T TIGR01245 74 IVGTGGDGANTINISTA-SAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLGPEKVARSLEE--TGIGFLFA 148 (330)
T ss_pred ccCCCCCCCCccccHHH-HHHHHHhCCCEEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeec
Confidence 99999999999999999 99999999999999999999999999 999999999999999999999999 99999999
Q ss_pred cccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc--ccc
Q 008923 378 REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA--LSM 455 (548)
Q Consensus 378 p~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~--iS~ 455 (548)
|.|||+|++++++|++||+||++|+.+++ +||++++++|+||||++|.++|+++++.+|.++++||||.||+ +++
T Consensus 149 ~~~~P~~~~l~~lR~~lg~rT~~N~lgpL---~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~G~~G~dE~s~ 225 (330)
T TIGR01245 149 PLYHPAMKHVAPVRRELGVRTVFNLLGPL---TNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVHGDDGLDEISL 225 (330)
T ss_pred hhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEECCCCceeecC
Confidence 99999999999999999999999999986 8999999999999999999999999999999999999999997 899
Q ss_pred cCCeeEEEecCCceeEEeecCccCCCCCC----------cCCccHH------------HHHHHhcHHHHHHHhcccCchh
Q 008923 456 TTRLRSVNASKGLPVNYCSGFRSLNVEST----------FEGDGLY------------NLARLLNCLKFMYYISSINIVT 513 (548)
Q Consensus 456 ~g~T~v~el~~G~~i~y~~~~~~~~~~~~----------~en~~il------------~~~~~LNAAaaLyv~g~a~~l~ 513 (548)
.++|++|++.+|...+|.+.++++++... .+|++++ ..++++|+|++||++|++++++
T Consensus 226 ~~~t~v~~~~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~~~~~~v~lnaA~~L~~~g~~~s~~ 305 (330)
T TIGR01245 226 TGPTTVAELKDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSGAKRDIVALNAAAALYVAGRASDLK 305 (330)
T ss_pred CCcEEEEEEECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999977789988877765432 2333322 1345599999999999999999
Q ss_pred hhhh
Q 008923 514 SNLV 517 (548)
Q Consensus 514 ~g~~ 517 (548)
+|+.
T Consensus 306 e~~~ 309 (330)
T TIGR01245 306 EGVE 309 (330)
T ss_pred HHHH
Confidence 9984
No 10
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=4.2e-52 Score=412.85 Aligned_cols=216 Identities=24% Similarity=0.305 Sum_probs=193.0
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceE
Q 008923 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 373 (548)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~Gfa 373 (548)
++||+|||||||.+||||||+ +|+|+|++|+||+|||||++|||+|+ +|+||+||+++++++++++++|++ .||+
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~-~a~vlAa~G~~V~kHG~r~~~~~~Gs--~dvLe~LGv~~~~~~~~~~~~l~~--~g~~ 76 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTA-AAIVLAAAGVPVAKHGNRGVTSKSGS--ADVLEALGVPIDLSPEEAQAQLEE--TGIA 76 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHH-HHHHHHHTTSEEEEEEESGCTTSSSH--HHHHHHSTB-TT--HHHHHHHHHH--HSEE
T ss_pred CceEEecCCCCCCCceehHHH-HHHHHHccCCcEecccCCCccccccH--HHHHHhcCCCcCCCHHHHHHHhhc--cCeE
Confidence 479999999999999999999 99999999999999999999999999 999999999999999999999999 9999
Q ss_pred EecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc-
Q 008923 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA- 452 (548)
Q Consensus 374 FL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~- 452 (548)
|+++|.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.+.|+++++.+|+++++|||| ||+
T Consensus 77 fl~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL---~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G-~G~d 152 (252)
T PF00591_consen 77 FLFAPNFHPALKRLAPVRRELGIRTVFNTLGPL---LNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKG-EGSD 152 (252)
T ss_dssp EEEHHHHSGGHHHHHHHHHHHTS--SHHHHGHH---HHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEE-TTBS
T ss_pred EecchhcCcchHHHHHHHHHcCCCCHHHhhhhh---cCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEec-CCcc
Confidence 999999999999999999999999999999997 889999999999999999999999999999999999999 996
Q ss_pred -ccccCCeeEEEecCCceeEEeecCccCCCCCC----------cCCccHH------------HHHHHhcHHHHHHHhccc
Q 008923 453 -LSMTTRLRSVNASKGLPVNYCSGFRSLNVEST----------FEGDGLY------------NLARLLNCLKFMYYISSI 509 (548)
Q Consensus 453 -iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~~----------~en~~il------------~~~~~LNAAaaLyv~g~a 509 (548)
+++.++|+++++++|...+|.++++++++... .+|..++ +..+.+|||++||++|++
T Consensus 153 E~~~~~~t~v~~~~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~ 232 (252)
T PF00591_consen 153 EISPLGPTRVYELKNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKA 232 (252)
T ss_dssp SHHHSSHEEEEEHHTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhccCcEEEeecCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999977889999988887543 2333332 134559999999999999
Q ss_pred Cchhhhhhh
Q 008923 510 NIVTSNLVL 518 (548)
Q Consensus 510 ~~l~~g~~~ 518 (548)
+++++|+..
T Consensus 233 ~s~~eg~~~ 241 (252)
T PF00591_consen 233 SSLEEGVEK 241 (252)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999854
No 11
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=2.8e-48 Score=412.34 Aligned_cols=274 Identities=17% Similarity=0.146 Sum_probs=238.1
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
|+|+++|+++.+|++||+||++++|+.|+ +|+++|.|++|||+++++||||.+|++++++||+++..++++++
T Consensus 1 m~~~~iI~k~~~g~~Lt~eE~~~~~~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~sg~~~~~~~ 73 (434)
T PRK06078 1 MRMVDLIQKKRDGKELTTEEINFFIEGYT-------NGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNSGDTIDLSA 73 (434)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcc
Confidence 56899999999999999999999999999 99999999999999999999999999999999999999987653
Q ss_pred --CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcc
Q 008923 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (548)
Q Consensus 293 --~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee~~ 369 (548)
...+|+|||||||.+|||+ +|+|+|+||++|+|||||++||++|+ +|+||+| |++++++++++.++|++
T Consensus 74 ~~~~~vD~~gTGGdG~kt~ni----~a~ivAA~Gv~VaKhgnR~lss~~GT--aD~LE~lpG~~~~ls~e~~~~~l~~-- 145 (434)
T PRK06078 74 IEGIKVDKHSTGGVGDTTTLV----LAPLVAAFGVPVAKMSGRGLGHTGGT--IDKLESIKGFHVEISQEDFIKLVNE-- 145 (434)
T ss_pred cCCCeeEecCCCCCCCCchHH----HHHHHHcCCCCeeeeCCCCcCCCcch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 2389999999999999994 78899999999999999999999999 9999999 99999999999999999
Q ss_pred CceEEec-ccccchhhhhHHHhhcccCCCCccccchhhhhhhcc--------cCCCeEEEeec--------CCCchHHHH
Q 008923 370 IGFAYVS-LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGFY--------HEGYEEPLL 432 (548)
Q Consensus 370 ~GfaFL~-Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNP--------a~a~~qViGVf--------h~~~~e~~A 432 (548)
+||+|++ +|.|||+|++++++|++++. ++.. + ++|| ++++++|+||| +++..+.+|
T Consensus 146 ~G~~fl~~a~~~~PAdk~v~~lR~v~~t---~n~l-P---Li~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a~~lA 218 (434)
T PRK06078 146 NKVAVIGQSGNLTPADKKLYALRDVTAT---VNSI-P---LIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDAEELA 218 (434)
T ss_pred hCcEEEccCCCcChhhhhhHHHhccccc---cChH-H---hhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHH
Confidence 9999999 59999999999999999994 3333 3 3677 88899999999 999999999
Q ss_pred HHHHHcCCCeEEEEEcCCCcccccCCeeEEEecCCceeEEeecCccCCC--CCCcCCccH-----------HHHHHHhcH
Q 008923 433 MLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNV--ESTFEGDGL-----------YNLARLLNC 499 (548)
Q Consensus 433 eal~~lG~~~alVV~G~eG~iS~~g~T~v~el~~G~~i~y~~~~~~~~~--~~~~en~~i-----------l~~~~~LNA 499 (548)
++|..+|.+ .|.+.+++++++ .++++. +++.|+.++ ++..+++||
T Consensus 219 ~~l~~lG~~--------------~g~~~~a~lt~~--------~~plG~~iGna~Ev~Ea~~vL~G~~~~~~~d~v~~~A 276 (434)
T PRK06078 219 HAMVRIGNN--------------VGRNTMAVISDM--------SQPLGRAIGNALEVLEAIDTLQGKGPKDLTELVLTLG 276 (434)
T ss_pred HHHHHHHHh--------------cCCeEEEEECCC--------CccccccCCCHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 999999965 568888888876 244442 344443322 223445999
Q ss_pred HHHHHHhcccCchhh-----------hhhhhccccccccCcc
Q 008923 500 LKFMYYISSINIVTS-----------NLVLQGCHARVSTSRS 530 (548)
Q Consensus 500 AaaLyv~g~a~~l~~-----------g~~~~~~~~~~~~~~~ 530 (548)
+.+||++|+++++++ |-.++++.+.|+++--
T Consensus 277 ~~~L~~~g~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg 318 (434)
T PRK06078 277 SQMVVLAGKAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGG 318 (434)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCC
Confidence 999999999988775 4467788888876654
No 12
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-48 Score=384.61 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=216.1
Q ss_pred HHHHHHHHhhhcC--CCHHHHHHHHHHHHhhC----CCCCC-----C-C-CCCeeEEcCCCCCCCccccchHHHHHHHhh
Q 008923 256 LLSAFLIGQRMNR--ETDRELKAYCLAFDDEL----GPPPV-----A-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSC 322 (548)
Q Consensus 256 QigAFLiaLR~KG--ET~eEIaGfa~Amr~~~----~~i~~-----~-~-~~~vDi~GTGGDG~~tfNiST~laAiVaAa 322 (548)
+...||++||... +..|-|.-+++|+..+. .+++- + + .+.+|||||||||.||||+||. +|||+|+
T Consensus 52 ~~~sfl~~L~~Tkae~~~e~l~ea~~al~s~s~~~~~pla~~~m~hpr~~~~~vDIVGTGGDG~NTfNvST~-saIvAag 130 (373)
T KOG1438|consen 52 ETLSFLVDLSETKAESSLEFLLEANEALISASLVLLVPLARAMMKHPRKVEDAVDIVGTGGDGANTFNVSTG-SAIVAAG 130 (373)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhccccchhhhhCcccCCceeEEeccCCCCcceeeecch-HHHHHhc
Confidence 3477888877654 45555666777776665 22211 1 1 2479999999999999999999 9999999
Q ss_pred cCCeEEeecCCCCCCCCCCcHHHHHHhCCCC-CCCCHHHHHHHHHhccCceEEecccccchhhhhHHHhhcccCCCCccc
Q 008923 323 YGESCLLHGAEWMPPKGGVTEEQMLKFMGAS-TNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVA 401 (548)
Q Consensus 323 aGv~VaKHGnRsvsSksGSt~ADvLEaLGi~-i~lspe~a~~~Lee~~~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~ 401 (548)
||.+|+||||++.+|.||+ +|+|++|||+ ++.+|+.+.+++++ .+|.||++|.|||+|+++.||||.||++|-+|
T Consensus 131 ~GlkvcKhGnkaStSasGs--aDll~~lGCd~l~v~p~~i~~~~e~--~~f~Fl~aPm~Hp~mk~V~piRK~LgipTvFN 206 (373)
T KOG1438|consen 131 CGLKVCKHGNKASTSASGS--ADLLEALGCDVLDVGPEGIKRCVEE--GGFGFLMAPMYHPAMKIVGPIRKKLGIPTVFN 206 (373)
T ss_pred ccchhhhcCCccccccCcc--HHHHHhcCceeeccCCccccccccc--CceeEEechhhcccccchhHHHHhcCCccHHH
Confidence 9999999999999999999 9999999998 59999999999999 99999999999999999999999999999777
Q ss_pred cchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc--ccccCCeeEEEecCCcee--EEeecCc
Q 008923 402 TSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA--LSMTTRLRSVNASKGLPV--NYCSGFR 477 (548)
Q Consensus 402 npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~--iS~~g~T~v~el~~G~~i--~y~~~~~ 477 (548)
-..++ |||++..+.++||||+++.+.||+++.++|..+-++|+|.+|+ +|+.|+|.+|.++++.+. .|++++.
T Consensus 207 ilGPl---LnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G~t~vw~v~~se~k~e~f~~~P~ 283 (373)
T KOG1438|consen 207 ILGPL---LNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLGGTLVWDVTPSEEKIEEFSFDPL 283 (373)
T ss_pred hcccc---cCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCCCceEEEecCCceeeeeeecCHh
Confidence 66654 7777779999999999999999999999999988999999996 999999999999987444 5888888
Q ss_pred cCCCCCCc----------CCccHHH--------------HHHHhcHHHHHHHhcccCchhhhhhh
Q 008923 478 SLNVESTF----------EGDGLYN--------------LARLLNCLKFMYYISSINIVTSNLVL 518 (548)
Q Consensus 478 ~~~~~~~~----------en~~il~--------------~~~~LNAAaaLyv~g~a~~l~~g~~~ 518 (548)
+|++++.. +|+-+++ +-+.||+|+++.|++.+.++++|+..
T Consensus 284 ~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~vs~~~q~l~EGv~~ 348 (373)
T KOG1438|consen 284 DFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLVSNRVQTLAEGVTV 348 (373)
T ss_pred hcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHHhhhhhHHHhhhHH
Confidence 88876432 5653322 22449999999999999999999853
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=7.6e-44 Score=375.98 Aligned_cols=286 Identities=18% Similarity=0.141 Sum_probs=230.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC--C
Q 008923 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD--V 293 (548)
Q Consensus 216 ~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~--~ 293 (548)
.++|+++.+|++||+||++++|+.|+ +|+++|.|++||||++|+||||++|++||++||+++..+++++. .
T Consensus 2 ~~~i~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~ 74 (405)
T TIGR02644 2 VDIIRKKRDGKKLSDEEINFFINGYT-------NGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSLPG 74 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccCC
Confidence 46899999999999999999999999 99999999999999999999999999999999999999887653 3
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCC-CCCCCCHHHHHHHHHhccCce
Q 008923 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDEEIGF 372 (548)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLG-i~i~lspe~a~~~Lee~~~Gf 372 (548)
+.+|+|||||||. |+||+ +|+|+|++|++|+|||||+++|++|+ +|+||+|| ++++++++++.+++++ +||
T Consensus 75 ~~vD~~gTGGdG~---~iSt~-~a~ivAa~Gv~VaKhgnR~lss~~GT--aD~LE~lgG~~v~ls~e~~~~~l~~--~G~ 146 (405)
T TIGR02644 75 PKVDKHSTGGVGD---KVSLV-LGPIVAACGVKVAKMSGRGLGHTGGT--IDKLESIPGFRTELSEAEFIEIVNK--VGL 146 (405)
T ss_pred CeeEEeCCCCCCC---CchHH-HHHHHHhCCCCEEeeCCCCCCCcchH--HHHHHhcCCCCCCCCHHHHHHHHHH--cCe
Confidence 4899999999998 48999 99999999999999999999999999 99999998 9999999999999999 999
Q ss_pred EEeccc-ccchhhhhHHHhhcccC-CCC-ccccchhhhhhhcccCCCeEEEee--------cCCCchHHHHHHHHHcCCC
Q 008923 373 AYVSLR-EARPSLYSLIGLREHIK-KRP-PVATSEKVQQFVRAQGREAIVAGF--------YHEGYEEPLLMLMKRRGVH 441 (548)
Q Consensus 373 aFL~Ap-~~hPamk~l~~iRk~LG-vRT-PL~npak~l~~LNPa~a~~qViGV--------fh~~~~e~~Aeal~~lG~~ 441 (548)
+|++++ ++||+++.+.++|+.++ +-+ ||.++..+.+.+ +.+++++|++| ++.+..+.+|+.|..+|.+
T Consensus 147 ~fl~~~~~l~PAdk~l~~lRd~~~Tv~sipLi~aSimSKK~-A~G~~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~~ 225 (405)
T TIGR02644 147 AIIGQTKDLAPADKKLYALRDVTGTVDSIPLIASSIMSKKL-AAGADAIVLDVKVGSGAFMKTLEDAKELAKLMVEIGKG 225 (405)
T ss_pred EEecCccccCcchhHHHHHhhcccccCcHHHHHHHHHHHHH-hcCCCeEEEeecccCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999 222 888887765555 35679999999 9999999999999998865
Q ss_pred eEE--EEEcCCCcccccCCeeEEEecCCceeEEeecCccCCCCCCcCCccHHHHHHHhcHHHHHHHhcccCchh------
Q 008923 442 SGL--VVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVT------ 513 (548)
Q Consensus 442 ~al--VV~G~eG~iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~~~en~~il~~~~~LNAAaaLyv~g~a~~l~------ 513 (548)
.++ ++... ++-.+.|...-..++ +.-. .+-+..+ ......++++ .||+.+|+.+|++.+++
T Consensus 226 ~g~~~~a~~t-~md~plG~~iGnalE----v~Ea--i~~L~g~---~p~dl~e~~~-~la~~~L~~~g~a~~~~~g~~~a 294 (405)
T TIGR02644 226 AGRKTSALLT-DMNQPLGRAIGNALE----VKEA--VEFLKGE---GPADLKELTL-ALAAEMLLLAGIAKTEKEARALA 294 (405)
T ss_pred cCCeEEEEec-CCCccccCCCCChhh----HHHH--HHHHCCC---CcHHHHHHHH-HHHHHHHHhCCCCCCHHHHHHHH
Confidence 444 33333 233333332111110 0000 0001110 0112333454 99999999999987644
Q ss_pred -----hhhhhhccccccccC
Q 008923 514 -----SNLVLQGCHARVSTS 528 (548)
Q Consensus 514 -----~g~~~~~~~~~~~~~ 528 (548)
+|-.++++.+.|++-
T Consensus 295 ~~~l~sG~Al~kf~~~v~aQ 314 (405)
T TIGR02644 295 EDVLESGKALEKFRRFVEAQ 314 (405)
T ss_pred HHHHhCcHHHHHHHHHHHHh
Confidence 566777777777643
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=6.2e-42 Score=367.55 Aligned_cols=277 Identities=18% Similarity=0.196 Sum_probs=227.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Q 008923 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 295 (548)
Q Consensus 216 ~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~~ 295 (548)
.++|+|+.+|++||++|++++|+.|+ +|+++|.|++|||+++++||||.+|++++++||+++..+++++..+.
T Consensus 82 ~~~I~kk~~G~~Ls~eE~~~~i~~i~-------~g~~sd~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~~g~~l~~~~~~~ 154 (490)
T PRK04350 82 LSAIRKKIDGEKLDKEEIEAIIRDIV-------AGRYSDIELSAFLTASAINGLDMDEIEALTRAMVETGERLDWDRPPV 154 (490)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCCCCCe
Confidence 47899999999999999999999999 99999999999999999999999999999999999999988764568
Q ss_pred eeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEe
Q 008923 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 375 (548)
Q Consensus 296 vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL 375 (548)
+|+|||||||.+++ |+. +++++|++|++|+|||||++||++|+ +|+||+|| +++++++++.+++++ +||||+
T Consensus 155 vDkhgTGGd~g~t~--S~~-~apivAA~Gv~VaKhgnRaiss~sGT--aD~LEaLg-~v~ls~e~~~~~l~~--~G~~fl 226 (490)
T PRK04350 155 VDKHSIGGVPGNRT--TLI-VVPIVAAAGLTIPKTSSRAITSPAGT--ADTMEVLA-PVDLSVEEIKRVVEK--VGGCLV 226 (490)
T ss_pred EEecCCCCCCCCCE--eHH-HHHHHHhCCCceeeecCCCCCCCCch--HHHHHHhh-cCCCCHHHHHHHHHH--cCEEEE
Confidence 99999999988887 555 66677999999999999999999999 99999999 999999999999999 999999
Q ss_pred c--ccccchhhhhHHHhhcccCCCCccccchhhhhhhc--------------ccCCCeEEEeecCCCchHHHHHHHHHcC
Q 008923 376 S--LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVR--------------AQGREAIVAGFYHEGYEEPLLMLMKRRG 439 (548)
Q Consensus 376 ~--Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LN--------------Pa~a~~qViGVfh~~~~e~~Aeal~~lG 439 (548)
| +|+|||+|++++++|+.|+++|..+-.+.+ +| |.+..++ |++.+..+.+++.|..+|
T Consensus 227 fG~a~~l~PAdk~l~~vR~~l~vds~~li~aSI---mSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA~~~~~vg 300 (490)
T PRK04350 227 WGGAVNLSPADDILIRVERPLSIDPRGQLVASI---LSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLARLFEEVG 300 (490)
T ss_pred ECCccccCHHHHHHHHHhhhcCCCcHHHHHHHH---hhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999955555554 56 6777777 899999999999999998
Q ss_pred CCeEEEEEcCCCcccccCCeeEEEecCC-ceeEEeecCccCCCC---CCcCC-----ccHHHHHHHhcHHHHHHHhcccC
Q 008923 440 VHSGLVVKGEEGALSMTTRLRSVNASKG-LPVNYCSGFRSLNVE---STFEG-----DGLYNLARLLNCLKFMYYISSIN 510 (548)
Q Consensus 440 ~~~alVV~G~eG~iS~~g~T~v~el~~G-~~i~y~~~~~~~~~~---~~~en-----~~il~~~~~LNAAaaLyv~g~a~ 510 (548)
.+.++.+ .+.++++ +++-+..++. +... +..++ ..+.+.++ .||+..|+.+|.++
T Consensus 301 ~~~g~~v--------------~a~lTd~~qPlG~~iGna-lEv~e~l~vL~g~~~gp~dl~e~~l-~lA~~~L~~~g~~~ 364 (490)
T PRK04350 301 DRLGLRV--------------ECAITDGSQPIGRGIGPA-LEARDVLAVLENDPDAPNDLREKSL-RLAGILLEMGGVAP 364 (490)
T ss_pred HhcCCeE--------------EEEECCCCeehhccCCch-HHHHHHHHHhCCCCCCCHhHHHHHH-HHHHHHHHhcCCCC
Confidence 7655554 2223333 2222333310 0000 01122 12334554 99999999999763
Q ss_pred ----------chhhhhhhhccccccccCc
Q 008923 511 ----------IVTSNLVLQGCHARVSTSR 529 (548)
Q Consensus 511 ----------~l~~g~~~~~~~~~~~~~~ 529 (548)
.|++|--++++.+.|++--
T Consensus 365 ~~~g~~~a~~~L~sG~Al~kf~~ii~aQG 393 (490)
T PRK04350 365 GGEGYALAREILESGKALEKFQEIIEAQG 393 (490)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHcC
Confidence 5667888888888888543
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=3.6e-38 Score=335.69 Aligned_cols=211 Identities=21% Similarity=0.228 Sum_probs=184.6
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCC-
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA- 291 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~- 291 (548)
|+|+++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+++|+||||++|+++|++||+++..+++.+
T Consensus 2 m~~~~~I~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i~~~~ 74 (440)
T PRK05820 2 FLAQEIIRKKRDGGALSDEEIDWFIDGYT-------DGTVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVLDWSS 74 (440)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 67899999999999999999999999999 9999999999999999999999999999999999999988654
Q ss_pred ---CCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHh
Q 008923 292 ---DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 367 (548)
Q Consensus 292 ---~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee 367 (548)
+.+.+|+|||||||+ |+||+ +|+++|++|++|+|||||+++|++|+ +|+||.| |++++++++++.+++++
T Consensus 75 ~d~~~~~vDkhgTGGdG~---niS~~-~a~ivAa~Gv~VaKhg~R~lss~~GT--aD~LE~LpG~~v~ls~e~~~~~l~~ 148 (440)
T PRK05820 75 LNLNGPIVDKHSTGGVGD---KISLM-LAPMVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYRAFPSNDRFREILKD 148 (440)
T ss_pred ccCCCCeEEEcCCCCCCc---cHHHH-HHHHHHhCCCCEEeeCCCCCCCcccH--HHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 235799999999998 89999 99999999999999999999999999 9999999 99999999999999999
Q ss_pred ccCceEEeccc-ccchhhhhHHHhhcccCCCC--ccccchhhhhhhcccCCCeEEE------eecCCCch--HHHHHHHH
Q 008923 368 EEIGFAYVSLR-EARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVA------GFYHEGYE--EPLLMLMK 436 (548)
Q Consensus 368 ~~~GfaFL~Ap-~~hPamk~l~~iRk~LGvRT--PL~npak~l~~LNPa~a~~qVi------GVfh~~~~--e~~Aeal~ 436 (548)
+|++|++++ .|||+|+++.++|+.++.-- ||....-+.+.+ +.++++.|+ |.|-+.+. +.+|+.|.
T Consensus 149 --~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~aSImSKK~-A~G~~~lvlDVk~G~gAfmkt~~~A~~La~~mv 225 (440)
T PRK05820 149 --VGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITASILSKKL-AEGLDALVLDVKVGSGAFMKTYEEARELARSMV 225 (440)
T ss_pred --cCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHHHHHHHHH-HcCCCeEEEEcCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999999 99999999999999886433 776654443333 356678777 55655544 44555555
Q ss_pred HcC
Q 008923 437 RRG 439 (548)
Q Consensus 437 ~lG 439 (548)
.+|
T Consensus 226 ~ig 228 (440)
T PRK05820 226 EVA 228 (440)
T ss_pred HHH
Confidence 544
No 16
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=1.9e-36 Score=325.22 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=185.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVK 294 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~ 294 (548)
=.++|+|+.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||+++..+++++...
T Consensus 86 S~~~I~kk~~G~~Lt~eE~~~ii~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~sg~~l~~~~~~ 158 (493)
T TIGR02645 86 SLRAIRKKIDGAKLDQHEIASIVGDIV-------DERLSDVEISAFLTASAINGMTMDEIEALTIAMADTGEMLEWDREP 158 (493)
T ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCccCCCCC
Confidence 357899999999999999999999999 9999999999999999999999999999999999999998876446
Q ss_pred CeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEE
Q 008923 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374 (548)
Q Consensus 295 ~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaF 374 (548)
.+|+||||||+.++||++ +++++|++|++|+|||||++||++|+ +|+||.|| +++++++++.+++++ .|+||
T Consensus 159 ~vDkhgTGGd~gnk~ni~---~apIvAA~Gv~VaKhsnRaits~sGT--AD~LE~Lg-~v~ls~e~~~~~ve~--~G~~f 230 (493)
T TIGR02645 159 IMDKHSIGGVPGNKTSLI---VVPIVAAAGLLIPKTSSRAITSAAGT--ADTMEVLT-RVALSAEEIKRIVEK--VGGCL 230 (493)
T ss_pred eEEEeCCCCCCCCCEeHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHHhc-CCCCCHHHHHHHHHH--CCEEE
Confidence 899999999999999884 55566999999999999999999999 99999999 999999999999999 99999
Q ss_pred ec--ccccchhhhhHHHhhcccCCCC-ccccchhhhhhhcccCCCeEEE------eecCCCch--HHHHHHHHHcC
Q 008923 375 VS--LREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVA------GFYHEGYE--EPLLMLMKRRG 439 (548)
Q Consensus 375 L~--Ap~~hPamk~l~~iRk~LGvRT-PL~npak~l~~LNPa~a~~qVi------GVfh~~~~--e~~Aeal~~lG 439 (548)
+| ++.|||++++++++|+.|++.+ ||..-.-+.+.+ ++++++.|+ |.|-+.+. +.+|+.|..+|
T Consensus 231 l~G~a~~l~PAdk~i~~vR~~l~vds~~li~aSImSKKl-A~G~~~lvlDvk~G~gAf~~~~~~A~~La~~~~~vg 305 (493)
T TIGR02645 231 VWGGALNLAPADDVLIRVERPLSIDPRAQMLASIMSKKI-AAGSTHVLIDIPVGPGAKVRSLQEAERLARLFIELG 305 (493)
T ss_pred EECCCcccCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-hcCCCeEEEeccccCCCcCCCHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999 777665554444 467888888 66666554 45555555544
No 17
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=5.1e-36 Score=318.38 Aligned_cols=209 Identities=18% Similarity=0.212 Sum_probs=184.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCC---
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA--- 291 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~--- 291 (548)
+.++|+++.+|++||++|++++|+.++ +|+++|.|++|||+++++||||.+|++++++||+++..+++++
T Consensus 3 ~~~~I~kk~~G~~Lt~eE~~~~i~~i~-------~g~i~d~QiaAfLmAl~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~ 75 (437)
T TIGR02643 3 PQEIIRKKRDGHSLSDAEIAQFINGIT-------DGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRDSGDVLDWRSLD 75 (437)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccc
Confidence 468999999999999999999999999 9999999999999999999999999999999999999988765
Q ss_pred -CCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcc
Q 008923 292 -DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (548)
Q Consensus 292 -~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee~~ 369 (548)
....+|+|||||||. |+||+ +|+++|++|++|+|||||+++|++|+ +|+||+| |++++++++++.+++++
T Consensus 76 ~~~~~vDkhgTGGdG~---niSt~-~apivAA~Gv~VaKhgnR~iss~~GT--aD~LEalpG~~v~ls~e~~~~~l~~-- 147 (437)
T TIGR02643 76 LNGPVVDKHSTGGVGD---VVSLM-LGPIVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYDIFPDPALFRRVVKD-- 147 (437)
T ss_pred cCCCeeEecCCCCCCc---chhHH-HHHHHHhCCCCeeeecCCCcCCCCch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 135899999999998 89999 99999999999999999999999999 9999999 99999999999999999
Q ss_pred CceEEec-ccccchhhhhHHHhhccc-CCCC-ccccchhhhhhhcccCCCeEEE------eecCCCch--HHHHHHHHHc
Q 008923 370 IGFAYVS-LREARPSLYSLIGLREHI-KKRP-PVATSEKVQQFVRAQGREAIVA------GFYHEGYE--EPLLMLMKRR 438 (548)
Q Consensus 370 ~GfaFL~-Ap~~hPamk~l~~iRk~L-GvRT-PL~npak~l~~LNPa~a~~qVi------GVfh~~~~--e~~Aeal~~l 438 (548)
+||+|+. ++.+||+++.+.++|..- .+.+ ||....-+.+.+ +.++++.|+ |.|-+.+. +.+|+.|..+
T Consensus 148 ~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~pLi~aSImSKKl-A~g~d~ivlDVk~G~gAfmk~~~~A~~LA~~mv~i 226 (437)
T TIGR02643 148 VGVAIIGQTADLAPADKRFYATRDVTATVESIPLITASILSKKL-AAGLDALVMDVKVGNGAFMPTYEESEELARSLVDV 226 (437)
T ss_pred cCceEEccCCCcCcchhceeeeeeecCCCCcHHHHHHHHHHHHH-HcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHH
Confidence 9999998 899999999999999654 4444 787776555544 467788888 67777665 4555655555
Q ss_pred C
Q 008923 439 G 439 (548)
Q Consensus 439 G 439 (548)
|
T Consensus 227 g 227 (437)
T TIGR02643 227 A 227 (437)
T ss_pred H
Confidence 4
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=4.2e-35 Score=315.08 Aligned_cols=209 Identities=14% Similarity=0.154 Sum_probs=183.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVK 294 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~ 294 (548)
-.++|+|+.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||+|.+|++++++||+++..+++++..+
T Consensus 87 s~~~I~kk~~G~~Ls~eEi~~ii~~i~-------~g~~~d~QiaAfL~Al~~kG~t~~Eia~lt~AM~~sg~~l~~~~~~ 159 (500)
T TIGR03327 87 SVEYIKKKMDGEKLTKDEIRAIVADIV-------DDKLSDIEISAFVTASYINGMDMDEIEWLTRAMAETGDMLSFDRHP 159 (500)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcccCCCCC
Confidence 458999999999999999999999999 9999999999999999999999999999999999999998876446
Q ss_pred CeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEE
Q 008923 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374 (548)
Q Consensus 295 ~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaF 374 (548)
.+|+|||||||.++||++ +++++|++|++|+|||||+++|++|+ +|+||.|+ +++++++++.+++++ +|+||
T Consensus 160 vvDkhgTGGd~gnk~nl~---~apIVAA~Gv~VaKhsnRaits~sGT--aD~LEsL~-~v~ls~e~~~~~v~~--~G~~f 231 (500)
T TIGR03327 160 IMDKHSIGGVPGNKISLL---VVPIVAAAGLTIPKTSSRAITSAAGT--ADVMEVLA-PVEFSADEIKRIVEK--TGGCL 231 (500)
T ss_pred eEEEeCCCCCCCCCEEHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHHhh-CCCCCHHHHHHHHHH--CCEEE
Confidence 899999999999999985 45555889999999999999999999 99999995 999999999999999 99999
Q ss_pred ec--ccccchhhhhHHHhhcccCCCC-ccccchhhhhhhcccCCCeEEE------eecCCCch--HHHHHHHHHcC
Q 008923 375 VS--LREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVA------GFYHEGYE--EPLLMLMKRRG 439 (548)
Q Consensus 375 L~--Ap~~hPamk~l~~iRk~LGvRT-PL~npak~l~~LNPa~a~~qVi------GVfh~~~~--e~~Aeal~~lG 439 (548)
++ +++|||+++++..+|+.+.+.+ ||..-.-+.+.+ ++|+++.|+ |.|-+... +.+|+.|..+|
T Consensus 232 l~Gqa~~l~PAdk~l~alrdt~tvds~~li~aSImSKKl-A~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~mv~vg 306 (500)
T TIGR03327 232 VWGGATNLAPADDKIIKVERPLSIDPRGQMLASVMAKKG-AIGADHVVIDIPVGKGAKVKTVEEGRKLARDFIELG 306 (500)
T ss_pred EECCccccCHHHHHHHHhccccCCCcHHHHHHHHHHHHH-HcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHHH
Confidence 99 9999999999999999888888 777765554444 467888888 66666554 44555555544
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.82 E-value=1.7e-19 Score=190.03 Aligned_cols=211 Identities=21% Similarity=0.234 Sum_probs=183.7
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
|.+.++|+|..+|+.||.+|.+.+++.+. +|.++|.|++||+||.-++|+|.+|++.+..||++.-..+++.+
T Consensus 2 ~~~v~iI~KKrdG~~L~~~EI~~~i~~~~-------~~~i~D~Q~sAf~mAi~f~gM~~~E~~~lT~AMv~SGe~ld~~~ 74 (435)
T COG0213 2 MRSVEIIRKKRDGKALSKEEIEFFINGYV-------NGTIPDYQISAFLMAIFFRGMTMDEIAALTMAMVDSGEVLDLSD 74 (435)
T ss_pred CchHHHHHHhcccccCCHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCEEeecc
Confidence 56889999999999999999999999999 99999999999999999999999999999999999988877653
Q ss_pred --CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcc
Q 008923 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (548)
Q Consensus 293 --~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee~~ 369 (548)
...+|-..|||-|.++.-+..+ ++|+||++|.|..+|+.++.+|. .|.||.+ |++++.+.++..+.+.+
T Consensus 75 ~~~~~vDKHStGGVgdk~sL~l~P----iVAA~Gl~VpK~SgRgLghtGGT--~DklEsi~g~~~~~~e~~fi~~~~~-- 146 (435)
T COG0213 75 IPGPVVDKHSTGGVGDKTSLILVP----IVAAAGLPVPKMSGRGLGHTGGT--LDKLESIPGVNLELDEIKFIEQVKD-- 146 (435)
T ss_pred CCCceecccCCCCCCcccchhHHH----HHHhcCCcccccccCccccCccc--hhhhhccCCcccCcCHHHHHHHhhc--
Confidence 3689999999999666555444 89999999999999999999999 9999999 99999999999999999
Q ss_pred CceEEeccc-ccchhhhhHHHhhcccC-CCC-ccccchhhhhhhcccCCCeEEE------eecCCCch--HHHHHHHHHc
Q 008923 370 IGFAYVSLR-EARPSLYSLIGLREHIK-KRP-PVATSEKVQQFVRAQGREAIVA------GFYHEGYE--EPLLMLMKRR 438 (548)
Q Consensus 370 ~GfaFL~Ap-~~hPamk~l~~iRk~LG-vRT-PL~npak~l~~LNPa~a~~qVi------GVfh~~~~--e~~Aeal~~l 438 (548)
+|++...|. +..|+-+.+..+|..++ +.+ ||..-.-+.+.+ ++++++.|+ |.|-+.+. +.+|+.|-.+
T Consensus 147 ~g~aiiGqs~~LaPADkklyalrdvtaTVdsipLiasSIMSKKl-A~G~~~ivlDVkvG~GAfmkt~~~a~~LA~~mv~i 225 (435)
T COG0213 147 NGVAIIGQSGNLAPADKKLYALRDVTATVDSIPLIASSIMSKKL-AAGADAIVLDVKVGSGAFMKTVEDARELAKAMVEI 225 (435)
T ss_pred CCeEEEeCcCCcCcccceeEEeeeccccCCcHHHHHHHHHHHHH-hccCCcEEEEecccCCCccCCHHHHHHHHHHHHHH
Confidence 999999888 99999999999999999 666 887776555555 467889888 66766654 4455554444
Q ss_pred C
Q 008923 439 G 439 (548)
Q Consensus 439 G 439 (548)
|
T Consensus 226 g 226 (435)
T COG0213 226 G 226 (435)
T ss_pred H
Confidence 3
No 20
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.71 E-value=1.1e-17 Score=161.77 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=93.3
Q ss_pred ccceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhH
Q 008923 97 QAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPL 175 (548)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~ 175 (548)
.-.|++||||++|. +||++++. |+++.+++|++| |||||+||-+|||.+.|| +-|.|||.| ...++|.+
T Consensus 46 pd~iviSPGPG~P~---d~G~~~~~-i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a-~~~~HGK~s-----~i~h~g~~ 115 (191)
T COG0512 46 PDAIVISPGPGTPK---DAGISLEL-IRRFAGRIPILGVCLGHQAIAEAFGGKVVRA-KEPMHGKTS-----IITHDGSG 115 (191)
T ss_pred CCEEEEcCCCCChH---HcchHHHH-HHHhcCCCCEEEECccHHHHHHHhCCEEEec-CCCcCCeee-----eeecCCcc
Confidence 45899999999999 99999999 899999999999 999999999999999999 899999999 78888888
Q ss_pred Hh-------------------hhCCCceEEEe--CCCCCccccCCCC----CCCCCCCCCcc
Q 008923 176 LM-------------------RALPPDVIFIA--DPEGSIMGGGGSI----GPHYSGNDPRE 212 (548)
Q Consensus 176 l~-------------------~~lp~~~~f~a--~p~g~iMg~~~~~----g~~~~~~~~~~ 212 (548)
+| .++|.++.++| +.+|.|||++|+. |++|.|.+-..
T Consensus 116 iF~glp~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESilT 177 (191)
T COG0512 116 LFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESILT 177 (191)
T ss_pred cccCCCCCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCCEEEEecCCccccc
Confidence 88 35999999998 4556999999999 55776555444
No 21
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=99.68 E-value=1e-16 Score=130.26 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=54.8
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhC
Q 008923 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (548)
Q Consensus 214 ~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~ 285 (548)
+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||++||+||||++||+||++||++++
T Consensus 1 ~~~~~l~~l~~g~~Ls~~e~~~~~~~i~-------~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 1 MIKEILKKLRDGEDLSREEAKAAFDAIL-------DGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp -HHHHHHHHHTT----HHHHHHHHHHHH-------TTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999 9999999999999999999999999999999999986
No 22
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.30 E-value=1.8e-12 Score=123.33 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=95.7
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhh---h
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFW---P 174 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~---~ 174 (548)
.+.++|+|++|. +.|||+|+ ++++.+++|..| |+|-|-|+-.||+++.|+.-=+.||+.| -+.+++ .
T Consensus 66 ~LliSPGPG~P~---DsGIs~~~-i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S-----~i~~D~~~~~ 136 (223)
T KOG0026|consen 66 GLLISPGPGTPQ---DSGISLQT-VLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSS-----MVHYDEKGEE 136 (223)
T ss_pred eEEecCCCCCCc---cccchHHH-HHHhCCCCceeeeehhhhhhhhhhCcEEeccCcceeecccc-----ccccCCcccc
Confidence 578999999999 99999999 899999999999 9999999999999999993246899999 899998 4
Q ss_pred HHh-------------------hhCC-CceEEEe-CCCCCccccCCCC-----CCCCCCCCCccCcHHHHHH
Q 008923 175 LLM-------------------RALP-PDVIFIA-DPEGSIMGGGGSI-----GPHYSGNDPREMRLVGALR 220 (548)
Q Consensus 175 ~l~-------------------~~lp-~~~~f~a-~p~g~iMg~~~~~-----g~~~~~~~~~~~~~~~~L~ 220 (548)
++| +.|| +++.++| ..+|.|||.||+- |++|.|.+-..-.=+.+++
T Consensus 137 G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~ir 208 (223)
T KOG0026|consen 137 GLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVR 208 (223)
T ss_pred ccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHH
Confidence 566 5777 8888898 9999999999986 8999776654433333333
No 23
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.12 E-value=3.4e-11 Score=138.99 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=69.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHH
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLL 176 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l 176 (548)
-.|++||||++|...++++++++. |+++ ..+|++| |+|||.|+.+|||.+.|+ +.|+||+.++ +.+.+..|
T Consensus 133 d~IVlSPGPG~P~~~~d~Gi~~~~-i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~-~~~~HG~~s~-----I~h~~~~l 204 (918)
T PLN02889 133 DNIVISPGPGSPTCPADIGICLRL-LLEC-RDIPILGVCLGHQALGYVHGARIVHA-PEPVHGRLSE-----IEHNGCRL 204 (918)
T ss_pred CEEEECCCCCCccchHHHHHHHHH-HHHh-CCCcEEEEcHHHHHHHHhcCceEEeC-CCceeeeeee-----EeecCchh
Confidence 369999999999999999999998 5555 4699999 999999999999999999 8899999884 33444444
Q ss_pred h-----------------------hhCCCceEEEe
Q 008923 177 M-----------------------RALPPDVIFIA 188 (548)
Q Consensus 177 ~-----------------------~~lp~~~~f~a 188 (548)
| ..||.+++++|
T Consensus 205 F~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~A 239 (918)
T PLN02889 205 FDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIA 239 (918)
T ss_pred hcCCCcCCCCCceEEeCCCcccccCCCCCceEEEE
Confidence 3 24778888887
No 24
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=98.96 E-value=4e-10 Score=108.26 Aligned_cols=101 Identities=22% Similarity=0.168 Sum_probs=80.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (548)
.|++||||+.|. +++..++. ++.+..++|++| |+|||.|+.+|||.+.|. ..++||++++- .+....+|
T Consensus 46 ~iils~GPg~p~---~~~~~~~~-~~~~~~~~PiLGIClG~Q~la~a~Gg~v~~~-~~~~~g~~~~v-----~~~~~~l~ 115 (187)
T PRK08007 46 KIVISPGPCTPD---EAGISLDV-IRHYAGRLPILGVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPI-----THNGEGVF 115 (187)
T ss_pred EEEEcCCCCChH---HCCccHHH-HHHhcCCCCEEEECHHHHHHHHHcCCEEEeC-CCcccCCceEE-----EECCCCcc
Confidence 499999999997 55555555 777888999999 999999999999999998 77899988732 22221122
Q ss_pred -------------------hhCCCceEEEe-CCCCCccccCCCC----CCCCCCCC
Q 008923 178 -------------------RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 178 -------------------~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
..+|+.+.++| +++|.|||++|+. |++|.|.+
T Consensus 116 ~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~~~i~GvQfHPE~ 171 (187)
T PRK08007 116 RGLANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLEGVQFHPES 171 (187)
T ss_pred cCCCCCcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCCCCEEEEEeCCcc
Confidence 26899999998 9999999999887 77886654
No 25
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=98.71 E-value=7.8e-09 Score=100.30 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=79.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH---HHHHhh--
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER---RAMNTF-- 172 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~---~~~~~~-- 172 (548)
.|+++|||+.|. +.....+. ++.+.+++|.+| |+|||.|+.+|||.+.|. +.++||.|++-.. ..+..+
T Consensus 46 ~iIlsgGP~~p~---~~~~~~~~-i~~~~~~~PvLGIClG~Qlla~~lGg~V~~~-~~~~~G~~~~i~~~~~~lf~~~~~ 120 (195)
T PRK07649 46 FLMISPGPCSPN---EAGISMEV-IRYFAGKIPIFGVCLGHQSIAQVFGGEVVRA-ERLMHGKTSLMHHDGKTIFSDIPN 120 (195)
T ss_pred EEEECCCCCChH---hCCCchHH-HHHhcCCCCEEEEcHHHHHHHHHcCCEEeeC-CCcccCCeEEEEECCChhhcCCCC
Confidence 499999999998 44445555 666778999999 999999999999999998 6688999863211 111111
Q ss_pred ------hhHHh---hhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCC
Q 008923 173 ------WPLLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 173 ------~~~l~---~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
|=.+. ..||+.+.++| +.+|.+||++|+. |++|.|...
T Consensus 121 ~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~~~i~gvQFHPE~~ 172 (195)
T PRK07649 121 PFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKTLPIEGVQFHPESI 172 (195)
T ss_pred CCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECCCCEEEEEECCCCC
Confidence 11111 25899999998 8999999999985 778876643
No 26
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.5e-08 Score=110.20 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=83.0
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (548)
.|++||||++|...++.+||++. +.+|+ ++|++| |+|+|+||++.||.++-+ .-|-||+.| -|.+.+--+|
T Consensus 67 aIVVgPGPG~P~~a~d~gI~~rl-~~~~~-~iPilGICLGfQal~l~hGA~v~~~-n~p~HGrvs-----~i~~~~~~~f 138 (767)
T KOG1224|consen 67 AIVVGPGPGSPMCAADIGICLRL-LLECR-DIPILGICLGFQALGLVHGAHVVHA-NEPVHGRVS-----GIEHDGNILF 138 (767)
T ss_pred eEEecCCCCCCCcHHHHHHHHHH-HHhcC-CCceeeeehhhHhHhhhcccceecC-CCcccceee-----eEEecCcEEE
Confidence 59999999999999999999999 99999 999999 999999999999999999 669999999 7778877666
Q ss_pred hhC---------------------CCceEEE-e---CCCC-CccccCCCC----CCCCCCCC
Q 008923 178 RAL---------------------PPDVIFI-A---DPEG-SIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 178 ~~l---------------------p~~~~f~-a---~p~g-~iMg~~~~~----g~~~~~~~ 209 (548)
+-+ |-|..-+ + |.+| -+|++.|+. |++|.|.+
T Consensus 139 ~gi~sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES 200 (767)
T KOG1224|consen 139 SGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPES 200 (767)
T ss_pred ccCCCCCcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHH
Confidence 333 3333322 2 3333 579999998 55554443
No 27
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=98.50 E-value=7.6e-08 Score=92.56 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=81.5
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH---HH-hhhh
Q 008923 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA---MN-TFWP 174 (548)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~---~~-~~~~ 174 (548)
|+++|||+.|. ++....+. ++++..++|++| |+|||.++.+|||.+.+. .-++|++|++-..+. +. .+.+
T Consensus 47 iilsgGpg~p~---~~~~~~~~-i~~~~~~~PvLGIC~G~Qll~~~~GG~v~~~-~~~~~g~~~~v~~~~~~~~~~l~~~ 121 (188)
T TIGR00566 47 IVISPGPCTPN---EAGISLEA-IRHFAGKLPILGVCLGHQAMGQAFGGDVVRA-NTVMHGKTSEIEHNGAGIFRGLFNP 121 (188)
T ss_pred EEEcCCCCChh---hcchhHHH-HHHhccCCCEEEECHHHHHHHHHcCCEEeeC-CCccccceEEEEECCCccccCCCCC
Confidence 99999999997 33444555 888888999999 999999999999999997 567799885322110 00 0011
Q ss_pred -------H-Hh--hhCCCceEEEe-CCC-CCccccCCCC----CCCCCCCCCccCcHHHHHH
Q 008923 175 -------L-LM--RALPPDVIFIA-DPE-GSIMGGGGSI----GPHYSGNDPREMRLVGALR 220 (548)
Q Consensus 175 -------~-l~--~~lp~~~~f~a-~p~-g~iMg~~~~~----g~~~~~~~~~~~~~~~~L~ 220 (548)
. .+ ..+|+.+.++| +.+ |.|||++|+. |++|.|.+.....=..+++
T Consensus 122 ~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~ 183 (188)
T TIGR00566 122 LTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLA 183 (188)
T ss_pred cEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCCcccHHHHH
Confidence 0 01 37888999998 665 6999999986 7788776644433333333
No 28
>PLN02335 anthranilate synthase
Probab=98.40 E-value=2.7e-07 Score=91.43 Aligned_cols=109 Identities=15% Similarity=0.076 Sum_probs=78.6
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH------HHHH
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER------RAMN 170 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~------~~~~ 170 (548)
..|+++|||+.|. +.++.++. ++.....+|++| |+|+|.|+.++||.+.|...-+.||.|.+-+. ..+.
T Consensus 64 d~iVisgGPg~p~---d~~~~~~~-~~~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~ 139 (222)
T PLN02335 64 RGVLISPGPGTPQ---DSGISLQT-VLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFS 139 (222)
T ss_pred CEEEEcCCCCChh---hccchHHH-HHHhCCCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhh
Confidence 3699999999997 55566776 677777899999 99999999999999999833357888874321 1111
Q ss_pred hhhhHH----------h-hhCCCc-eEEEe-CCCCCccccCCCC-----CCCCCCCCC
Q 008923 171 TFWPLL----------M-RALPPD-VIFIA-DPEGSIMGGGGSI-----GPHYSGNDP 210 (548)
Q Consensus 171 ~~~~~l----------~-~~lp~~-~~f~a-~p~g~iMg~~~~~-----g~~~~~~~~ 210 (548)
.+...+ . ..||+. +.+++ +.+|.||+++|+. |++|.|...
T Consensus 140 ~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~ 197 (222)
T PLN02335 140 GLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESI 197 (222)
T ss_pred CCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCC
Confidence 111000 0 256766 88887 9999999999874 667765443
No 29
>CHL00101 trpG anthranilate synthase component 2
Probab=98.28 E-value=4.6e-07 Score=87.21 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=77.4
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhh-
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTF- 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~---~~~~~- 172 (548)
..|+++|||+.|. +.. +...|++.+..++|.+| |+|+|.|..+|||.+.|. +.++|+.|+..... .+..+
T Consensus 45 dgiiisgGpg~~~---~~~-~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~~~~~~~~l~~~~~ 119 (190)
T CHL00101 45 RHIIISPGPGHPR---DSG-ISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKA-PKPMHGKTSKIYHNHDDLFQGLP 119 (190)
T ss_pred CEEEECCCCCChH---HCc-chHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEEC-CCcccCceeeEeeCCcHhhccCC
Confidence 4699999999997 333 33445677788999999 999999999999999988 67789988743211 11111
Q ss_pred -------hhHH-h--hhCCCceEEEe-CCCCCccccCCCC-----CCCCCCCC
Q 008923 173 -------WPLL-M--RALPPDVIFIA-DPEGSIMGGGGSI-----GPHYSGND 209 (548)
Q Consensus 173 -------~~~l-~--~~lp~~~~f~a-~p~g~iMg~~~~~-----g~~~~~~~ 209 (548)
|-.+ + ..||+.+.++| +++|.+||++++. |++|.|..
T Consensus 120 ~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~ 172 (190)
T CHL00101 120 NPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPES 172 (190)
T ss_pred CceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCcc
Confidence 1110 0 15899999998 8999999999865 55775544
No 30
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=98.25 E-value=7.2e-07 Score=85.64 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=74.2
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHHHHhh--
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRAMNTF-- 172 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~~~~~~~-- 172 (548)
.|++||||..|. +.+..++. ++.+..++|++| |+|+|.|..+|||.+.+. ..++||.++... ...++.+
T Consensus 46 ~iilsgGP~~~~---~~~~~~~~-i~~~~~~~PiLGIC~G~Qlla~~~GG~v~~~-~~~~~G~~~~~~~~~~~lf~~l~~ 120 (191)
T PRK06774 46 HLVISPGPCTPN---EAGISLAV-IRHFADKLPILGVCLGHQALGQAFGARVVRA-RQVMHGKTSAICHSGQGVFRGLNQ 120 (191)
T ss_pred eEEEcCCCCChH---hCCCchHH-HHHhcCCCCEEEECHHHHHHHHHhCCEEEeC-CcceecceEEEEecCchhhcCCCC
Confidence 499999999997 44555555 677888999999 999999999999999998 446677544110 0011111
Q ss_pred ------hhHHh---hhCCCceEEEe-CC-CC---CccccCCCC----CCCCCCCCC
Q 008923 173 ------WPLLM---RALPPDVIFIA-DP-EG---SIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 173 ------~~~l~---~~lp~~~~f~a-~p-~g---~iMg~~~~~----g~~~~~~~~ 210 (548)
|=.+. ..||+++.++| ++ +| .||+++|+. |++|.|...
T Consensus 121 ~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~ 176 (191)
T PRK06774 121 PLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESI 176 (191)
T ss_pred CcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcC
Confidence 11111 25888888887 44 43 589999885 778876653
No 31
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=98.25 E-value=7.5e-07 Score=85.86 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=79.7
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhh-
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTF- 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~---~~~~~- 172 (548)
..|+++|||..|. +.....+. ++.+...+|.+| |+|||.|+.++||.+.+. ..++||.+.+-..+ .+..+
T Consensus 45 ~~iilsgGp~~~~---~~~~~~~~-i~~~~~~~PiLGIClG~Qlia~a~Gg~v~~~-~~~~~G~~~~~~~~~~~l~~~~~ 119 (193)
T PRK08857 45 THLVISPGPCTPN---EAGISLQA-IEHFAGKLPILGVCLGHQAIAQVFGGQVVRA-RQVMHGKTSPIRHTGRSVFKGLN 119 (193)
T ss_pred CEEEEeCCCCChH---HCcchHHH-HHHhcCCCCEEEEcHHHHHHHHHhCCEEEeC-CCceeCceEEEEECCCcccccCC
Confidence 3599999999997 33334444 677788999999 999999999999999998 66777764311100 11111
Q ss_pred -------hhHHh---hhCCCceEEEe-CC--CC---CccccCCCC----CCCCCCCCCccCcHHHHHHHH
Q 008923 173 -------WPLLM---RALPPDVIFIA-DP--EG---SIMGGGGSI----GPHYSGNDPREMRLVGALREV 222 (548)
Q Consensus 173 -------~~~l~---~~lp~~~~f~a-~p--~g---~iMg~~~~~----g~~~~~~~~~~~~~~~~L~kL 222 (548)
|-.+. ..||+.+.++| ++ || .|||++|+. |++|.|.+.....-..+++..
T Consensus 120 ~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nF 189 (193)
T PRK08857 120 NPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANF 189 (193)
T ss_pred CccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHH
Confidence 11000 26899999997 54 44 499998886 778876655443344444443
No 32
>PRK05670 anthranilate synthase component II; Provisional
Probab=98.22 E-value=1.1e-06 Score=84.20 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=77.3
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHHHHhhhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRAMNTFWP 174 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~~~~~~~~~ 174 (548)
.|+++|||+.|. ++....+. |+.+..++|.+| |+|||.|...+||.+.+. +.+.|+.+++-. ...+..+..
T Consensus 46 glIlsgGpg~~~---d~~~~~~~-l~~~~~~~PvLGIClG~Qlla~alGg~v~~~-~~~~~g~~~~v~~~~~~l~~~~~~ 120 (189)
T PRK05670 46 AIVLSPGPGTPA---EAGISLEL-IREFAGKVPILGVCLGHQAIGEAFGGKVVRA-KEIMHGKTSPIEHDGSGIFAGLPN 120 (189)
T ss_pred EEEEcCCCCChH---HcchHHHH-HHHhcCCCCEEEECHHHHHHHHHhCCEEEec-CCcccCceeEEEeCCCchhccCCC
Confidence 599999999995 55555554 788878899999 999999999999999987 557787665321 111111111
Q ss_pred H---------Hhh--hCCCceEEEe-CCCCCccccCCCC----CCCCCCCCC
Q 008923 175 L---------LMR--ALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 175 ~---------l~~--~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
. .+. .||+.+.++| +++|.|+|++++. |++|.|...
T Consensus 121 ~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~~~~~gvQfHPE~~ 172 (189)
T PRK05670 121 PFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKELPIYGVQFHPESI 172 (189)
T ss_pred CcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECCCCEEEEeeCCCcC
Confidence 1 111 3899999887 7899999999865 778876654
No 33
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=98.21 E-value=5.7e-07 Score=96.85 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=80.2
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH-----HHHHhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER-----RAMNTF 172 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~-----~~~~~~ 172 (548)
.|++++||+.|. ++....+. ++++.+++|++| |+|||.|+.++||.+.+. +|..||...+-.. -++..-
T Consensus 284 GIiLSnGPGDP~---~~~~~ie~-ik~l~~~iPIlGICLGhQlLa~AlGGkv~K~-~~Gh~G~n~pV~~~~~~~v~itsq 358 (415)
T PLN02771 284 GVLFSNGPGDPS---AVPYAVET-VKELLGKVPVFGICMGHQLLGQALGGKTFKM-KFGHHGGNHPVRNNRTGRVEISAQ 358 (415)
T ss_pred EEEEcCCCCChh---HhhHHHHH-HHHHHhCCCEEEEcHHHHHHHHhcCCeEEEC-CCCcccceEEEEECCCCCEEEEec
Confidence 599999999886 66667777 777778999999 999999999999999998 9998888753210 000000
Q ss_pred hhHH-h--hhCCCceEEEe--CCCCCccccCCCC----CCCCCCCC
Q 008923 173 WPLL-M--RALPPDVIFIA--DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 173 ~~~l-~--~~lp~~~~f~a--~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
+-++ + +.||.++.+++ ..||.+||++|+. |++|.|..
T Consensus 359 nHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa 404 (415)
T PLN02771 359 NHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEA 404 (415)
T ss_pred CHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCC
Confidence 1111 1 57899899886 4799999999998 66776543
No 34
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.16 E-value=1.3e-06 Score=83.88 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=77.9
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH----HHHhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR----AMNTF 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~----~~~~~ 172 (548)
-.|+++|||..|. ......+. |+.+...+|.+| |+|+|.|...+||.+.|. ..++|+.|++-+.. .++.+
T Consensus 45 d~iIi~gGp~~~~---~~~~~~~~-i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~v~~~~~~~l~~~~ 119 (190)
T PRK06895 45 SHILISPGPDVPR---AYPQLFAM-LERYHQHKSILGVCLGHQTLCEFFGGELYNL-NNVRHGQQRPLKVRSNSPLFDGL 119 (190)
T ss_pred CEEEECCCCCChH---HhhHHHHH-HHHhcCCCCEEEEcHHHHHHHHHhCCeEeec-CCCccCceEEEEECCCChhhhcC
Confidence 3688899998774 44555555 788888999999 999999999999999987 44789998743311 22211
Q ss_pred --------hhHHh---hhCCCceEEEe-CCCCCccccCCCC----CCCCCCCC
Q 008923 173 --------WPLLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 173 --------~~~l~---~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
|-.+. ..||..+..++ +.++.||+++|+. |++|.|..
T Consensus 120 ~~~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~ 172 (190)
T PRK06895 120 PEEFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPES 172 (190)
T ss_pred CCceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECCCCEEEEEeCCCc
Confidence 11111 14788888887 8899999999876 77886654
No 35
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=98.01 E-value=2.7e-06 Score=97.37 Aligned_cols=121 Identities=15% Similarity=0.079 Sum_probs=85.9
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH----HHHhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR----AMNTF 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~----~~~~~ 172 (548)
-.|+++|||+.|.+. ...+.|-+.+..++|.+| |+|+|.|+.+|||.+.+. +.|.||+|++-+.. ++..+
T Consensus 561 DgLILsgGPGsp~d~----~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~-~~p~~G~~~~V~~~~~~~Lf~~l 635 (717)
T TIGR01815 561 DLVVLSPGPGRPADF----DVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL-PEPVHGKASRIRVLGPDALFAGL 635 (717)
T ss_pred CEEEEcCCCCCchhc----ccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEEC-CCCeeCcceEEEECCCChhhhcC
Confidence 369999999999843 235554444567899999 999999999999999998 88999998743211 22211
Q ss_pred --------hhHHh---hhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCCcc-------CcHHHHHHHHh
Q 008923 173 --------WPLLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE-------MRLVGALREVL 223 (548)
Q Consensus 173 --------~~~l~---~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~~~-------~~~~~~L~kL~ 223 (548)
|-.+. ..||+++.++| +++|.+|+++|+. |++|.|.+-.. ..++.++..+.
T Consensus 636 p~~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 636 PERLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLA 709 (717)
T ss_pred CCCCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHh
Confidence 22211 36899999998 8999999999866 77887766322 12555555554
No 36
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=97.94 E-value=5.6e-06 Score=95.15 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=73.1
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHH
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLL 176 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l 176 (548)
.|++||||++|..+++.+++-+. ++.. ..++|++| |+|||.|+.+|||.+.+. ++|+||++++- .+.+..+
T Consensus 56 ~VVIspGPG~p~~~~~~~i~~~i-~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~-~~~~hG~~~~v-----~~~~~~l 128 (742)
T TIGR01823 56 AIVVGPGPGNPNNAQDMGIISEL-WELANLDEVPVLGICLGFQSLCLAQGADISRL-PTPKHGQVYEM-----HTNDAAI 128 (742)
T ss_pred EEEECCCCCCccchhhhHHHHHH-HHhcccCCCcEEEEchhhHHHHhhcCCEEEEC-CCCCcCeEEEE-----EECCccc
Confidence 59999999999877666555444 5543 34799999 999999999999999988 78999986522 1211112
Q ss_pred h-----------------hhCCCc--eEEEe-CC-CCCccccCCCC----CCCCCCCC
Q 008923 177 M-----------------RALPPD--VIFIA-DP-EGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 177 ~-----------------~~lp~~--~~f~a-~p-~g~iMg~~~~~----g~~~~~~~ 209 (548)
| ...|++ +.+++ +. ++.|||+.|+. |++|.|.+
T Consensus 129 f~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~ 186 (742)
T TIGR01823 129 FCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPES 186 (742)
T ss_pred cCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCccc
Confidence 1 124444 34444 44 45799999998 66776665
No 37
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.85 E-value=9.4e-06 Score=79.89 Aligned_cols=119 Identities=11% Similarity=0.068 Sum_probs=78.0
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-------HHH
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-------AMN 170 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~-------~~~ 170 (548)
.|+++|||+.|. +++...+. ++++.+++|++| |+|+|.|..++|+.+.+. . +++|.|+.-+.+ .+.
T Consensus 47 ~iIlsgGPg~~~---d~~~~~~l-i~~~~~~~PiLGIClG~Qlla~alGG~V~~~-~-~~~G~~~~i~~~~~~~~~~l~~ 120 (208)
T PRK05637 47 LICLSPGPGHPR---DAGNMMAL-IDRTLGQIPLLGICLGFQALLEHHGGKVEPC-G-PVHGTTDNMILTDAGVQSPVFA 120 (208)
T ss_pred EEEEeCCCCCHH---HhhHHHHH-HHHHhCCCCEEEEcHHHHHHHHHcCCeeccC-C-cccceEEEeEECCCCCCCcccC
Confidence 699999999997 55554444 677667899999 999999999999999876 3 567766422111 111
Q ss_pred hh------------hhH---------HhhhCCCceEEEe-CCC---CCccccCCCC----CCCCCCCCCccCc----HHH
Q 008923 171 TF------------WPL---------LMRALPPDVIFIA-DPE---GSIMGGGGSI----GPHYSGNDPREMR----LVG 217 (548)
Q Consensus 171 ~~------------~~~---------l~~~lp~~~~f~a-~p~---g~iMg~~~~~----g~~~~~~~~~~~~----~~~ 217 (548)
.. |.. -+..+|+++.++| +++ +.+|++.+.. |++|.|...-... ++.
T Consensus 121 ~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~n 200 (208)
T PRK05637 121 GLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSR 200 (208)
T ss_pred CCCcccccccccccCCceEEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHH
Confidence 10 001 1256899999998 333 3689977655 6677665443322 444
Q ss_pred HHHHHh
Q 008923 218 ALREVL 223 (548)
Q Consensus 218 ~L~kL~ 223 (548)
++++++
T Consensus 201 fl~~~~ 206 (208)
T PRK05637 201 CVEQLL 206 (208)
T ss_pred HHHHHh
Confidence 554443
No 38
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.80 E-value=2.2e-05 Score=77.35 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=75.8
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHH
Q 008923 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRA 168 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~~~ 168 (548)
++.=..|++++||..|. +....++. ++++. .++|++| |.|||.|..+|||.+.+. ..++++..+... ...
T Consensus 44 ~~~~dgliisGGp~~~~---~~~~~~~~-i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~-~~~~~g~~~~v~~~~~~~ 118 (214)
T PRK07765 44 AAQFDGVLLSPGPGTPE---RAGASIDM-VRACAAAGTPLLGVCLGHQAIGVAFGATVDRA-PELLHGKTSSVHHTGVGV 118 (214)
T ss_pred hcCCCEEEECCCCCChh---hcchHHHH-HHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC-CCCccCceeEEEECCCcc
Confidence 34445699999998776 44555555 67665 4799999 999999999999999986 555555532100 001
Q ss_pred HH--------hhhhH-Hh--hhCCCceEEEe-CCCCCccccCCCC----CCCCCCCC
Q 008923 169 MN--------TFWPL-LM--RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 169 ~~--------~~~~~-l~--~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
+. .+|=. .+ ..||+.+.++| +++|.++|++++. |++|.|..
T Consensus 119 ~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~ 175 (214)
T PRK07765 119 LAGLPDPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPES 175 (214)
T ss_pred ccCCCCccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCCCCEEEEeeCCCc
Confidence 10 01111 11 36899999998 8999999999875 77886654
No 39
>PRK13566 anthranilate synthase; Provisional
Probab=97.75 E-value=1.5e-05 Score=91.36 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=78.5
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH----HHHhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR----AMNTF 172 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~----~~~~~ 172 (548)
.|+++|||+.|-+. .+.+. ++.+ ...+|++| |+|+|.|..+||+.+.+. ..|.|+.|++-..+ .+..+
T Consensus 572 gVVLsgGpgsp~d~----~~~~l-I~~a~~~~iPILGIClG~QlLa~alGG~V~~~-~~~~~G~~~~V~v~~~~~Lf~~l 645 (720)
T PRK13566 572 LVVLSPGPGRPSDF----DCKAT-IDAALARNLPIFGVCLGLQAIVEAFGGELGQL-AYPMHGKPSRIRVRGPGRLFSGL 645 (720)
T ss_pred EEEECCCCCChhhC----CcHHH-HHHHHHCCCcEEEEehhHHHHHHHcCCEEEEC-CCCccCCceEEEECCCCchhhcC
Confidence 48999999998632 34555 5554 45799999 999999999999999987 77899988633221 12111
Q ss_pred --------hhHHh---hhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCCcc
Q 008923 173 --------WPLLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE 212 (548)
Q Consensus 173 --------~~~l~---~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~~~ 212 (548)
|-.++ ..||+++.++| +++|.||++.|+. |++|.|...+.
T Consensus 646 p~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t 701 (720)
T PRK13566 646 PEEFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMT 701 (720)
T ss_pred CCCCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCc
Confidence 11111 35999999998 9999999999986 66886665443
No 40
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.74 E-value=2.5e-05 Score=82.87 Aligned_cols=106 Identities=11% Similarity=0.007 Sum_probs=73.7
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-----HHHh-
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-----AMNT- 171 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~-----~~~~- 171 (548)
.|++++||+.|. +....++. ++++...+|.+| |+|||.|+.+|||.+.+. +|+.|+.+.+-... .+..
T Consensus 211 GIiLsgGPgdp~---~~~~~~~~-i~~~~~~~PvlGIClG~QlLa~a~Gg~v~kl-~~gh~G~~hpV~~~~~~~~~~ts~ 285 (354)
T PRK12838 211 GIVLSNGPGDPK---ELQPYLPE-IKKLISSYPILGICLGHQLIALALGADTEKL-PFGHRGANHPVIDLTTGRVWMTSQ 285 (354)
T ss_pred EEEEcCCCCChH---HhHHHHHH-HHHHhcCCCEEEECHHHHHHHHHhCCEEecC-CCCccCCceEEEECCCCeEEEecc
Confidence 589999999886 44556676 677666699999 999999999999999987 88877776532110 0000
Q ss_pred hhhHHh--hhCCCc-eEEEe--CCCCCccccCCCC----CCCCCCCC
Q 008923 172 FWPLLM--RALPPD-VIFIA--DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 172 ~~~~l~--~~lp~~-~~f~a--~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
+=-.-+ ..+|.. +.+++ ..||.|||++|+. |++|.|..
T Consensus 286 ~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~ 332 (354)
T PRK12838 286 NHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEA 332 (354)
T ss_pred chheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 000001 236543 66664 5799999999987 66776654
No 41
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.69 E-value=3e-05 Score=73.78 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=73.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhc-CCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh---
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF--- 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~--- 172 (548)
..|++++|+..|. +....++. ++++.. .+|++| |+|+|.|+.+||+.+.+. +++.++.+.+-........
T Consensus 41 dgiil~GG~~~~~---~~~~~~~~-~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~-~~~~~g~~~~v~~~~~~~~~~v 115 (178)
T cd01744 41 DGIFLSNGPGDPA---LLDEAIKT-VRKLLGKKIPIFGICLGHQLLALALGAKTYKM-KFGHRGSNHPVKDLITGRVYIT 115 (178)
T ss_pred CEEEECCCCCChh---HhHHHHHH-HHHHHhCCCCEEEECHHHHHHHHHcCCceecC-CCCCCCCceeeEEcCCCCcEEE
Confidence 3589999988776 33445555 676654 499999 999999999999999986 6666766542110000000
Q ss_pred --hhH-Hh--hhCCCceEEEe-C-CCCCccccCCCC----CCCCCCCC
Q 008923 173 --WPL-LM--RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 173 --~~~-l~--~~lp~~~~f~a-~-p~g~iMg~~~~~----g~~~~~~~ 209 (548)
|-. -+ +.||+.+.++| + .+|.||++.|+. |++|.|..
T Consensus 116 ~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfHPE~ 163 (178)
T cd01744 116 SQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEA 163 (178)
T ss_pred EcCceEEEcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeCCCC
Confidence 111 01 36999999998 5 589999999876 66776643
No 42
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=97.69 E-value=2.6e-05 Score=82.86 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=74.2
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH-----HHHH--
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE-----RRAM-- 169 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e-----~~~~-- 169 (548)
-.|++++||+.|. +....++. ++.+...+|++| |+|||.|+.+|||.+.+. +|..|+...+-. +-.+
T Consensus 216 DGIiLSgGPgdp~---~~~~~i~~-i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl-~~gh~G~nhpV~~~~~~~v~its 290 (358)
T TIGR01368 216 DGIFLSNGPGDPA---AVEPAIET-IRKLLEKIPIFGICLGHQLLALAFGAKTYKM-KFGHRGGNHPVKDLITGRVEITS 290 (358)
T ss_pred CEEEECCCCCCHH---HHHHHHHH-HHHHHcCCCEEEECHHHHHHHHHhCCceecc-CcCcCCCceeeEECCCCcEEEee
Confidence 4699999999886 44455666 777777999999 999999999999999997 777766543110 0000
Q ss_pred -HhhhhHHhhhCC-CceEEEe-C-CCCCccccCCCC----CCCCCCCC
Q 008923 170 -NTFWPLLMRALP-PDVIFIA-D-PEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 170 -~~~~~~l~~~lp-~~~~f~a-~-p~g~iMg~~~~~----g~~~~~~~ 209 (548)
.|-+.-=.+.|| ..+.+++ + .||.|||++|+. |++|.|..
T Consensus 291 qnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~ 338 (358)
T TIGR01368 291 QNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEA 338 (358)
T ss_pred cCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCC
Confidence 010000003567 5688886 4 699999999998 66776544
No 43
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.63 E-value=4.5e-05 Score=81.14 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=74.4
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH-----HHHHHh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE-----RRAMNT 171 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e-----~~~~~~ 171 (548)
.|++++||+.|. +....++. ++++. ..+|.+| |+|||.|+.+|||.+.+. +|..|+...+-. +..+..
T Consensus 221 GIvLSgGPgdp~---~~~~~~~~-i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl-~~gh~G~~~pv~~~~~~~~~its 295 (360)
T PRK12564 221 GVFLSNGPGDPA---ALDYAIEM-IRELLEKKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHPVKDLETGKVEITS 295 (360)
T ss_pred EEEEeCCCCChH---HHHHHHHH-HHHHHHcCCeEEEECHHHHHHHHHhCCcEecc-CCCccCCceeeEECCCCcEEEEe
Confidence 589999999886 44455555 77776 4799999 999999999999999997 777666533110 000000
Q ss_pred hhhHH-h--hhCCCceEEEe-C-CCCCccccCCCC----CCCCCCCCC
Q 008923 172 FWPLL-M--RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 172 ~~~~l-~--~~lp~~~~f~a-~-p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
.+-++ + +.||..+.+++ + .||.|||+.|+. |++|.|...
T Consensus 296 ~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~ 343 (360)
T PRK12564 296 QNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEAS 343 (360)
T ss_pred cCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCC
Confidence 01111 1 37898888887 5 599999999987 667766543
No 44
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.61 E-value=3.1e-05 Score=73.70 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=71.3
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (548)
.|+++|++..|.+.+ .+..|++.+..++|.+| |+|+|.|..++|+.+.+. ..+.++.|.+-. .....++
T Consensus 45 gvil~gG~~~~~~~~----~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~-~~~~~g~~~~v~-----~~~~~~~ 114 (184)
T cd01743 45 AIVISPGPGHPEDAG----ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRA-PEPMHGKTSEIH-----HDGSGLF 114 (184)
T ss_pred EEEECCCCCCcccch----hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeC-CCCCcCceeEEE-----ECCCccc
Confidence 389999999998543 45555666777899999 999999999999999987 566677665321 1111122
Q ss_pred -----------------hhCCCc--eEEEe-CCCCCccccCCCC----CCCCCCC
Q 008923 178 -----------------RALPPD--VIFIA-DPEGSIMGGGGSI----GPHYSGN 208 (548)
Q Consensus 178 -----------------~~lp~~--~~f~a-~p~g~iMg~~~~~----g~~~~~~ 208 (548)
..+|.. +..+| ++++.+++++++. |++|.|.
T Consensus 115 ~~~~~~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~~~i~gvQfHPE 169 (184)
T cd01743 115 KGLPQPFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRDLPIYGVQFHPE 169 (184)
T ss_pred cCCCCCcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCCCCEEEEeeCCC
Confidence 234555 66776 8899999999877 5566444
No 45
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.49 E-value=9.9e-05 Score=79.15 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=69.1
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHH---HHHHH---H
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEG---ERRAM---N 170 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~---e~~~~---~ 170 (548)
.|+++|||+.|. +....++. ++.+ ...+|++| |+|||.|+.+|||.+.+. +|..++...+- .+-.+ .
T Consensus 236 gIilSgGPg~p~---~~~~~i~~-i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~-~~Gh~g~n~pv~~~~~v~itsq~ 310 (382)
T CHL00197 236 GILLSNGPGDPS---AIHYGIKT-VKKLLKYNIPIFGICMGHQILSLALEAKTFKL-KFGHRGLNHPSGLNQQVEITSQN 310 (382)
T ss_pred EEEEcCCCCChh---HHHHHHHH-HHHHHhCCCCEEEEcHHHHHHHHHhCCEEecc-CCCCCCCCEecCCCCceEEeecc
Confidence 599999999997 44556677 4555 46899999 999999999999999987 55544421100 00011 1
Q ss_pred hhhhHHhhhCCC-ceEEE--eCCCCCccccCCCC----CCCCCCCC
Q 008923 171 TFWPLLMRALPP-DVIFI--ADPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 171 ~~~~~l~~~lp~-~~~f~--a~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
|-+----+.+|. ++.++ +..||.|||++|+. |++|.|..
T Consensus 311 H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~ 356 (382)
T CHL00197 311 HGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEA 356 (382)
T ss_pred hheEeeccccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCC
Confidence 111100145553 45555 34699999999998 56776544
No 46
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.20 E-value=0.00017 Score=72.46 Aligned_cols=115 Identities=12% Similarity=0.021 Sum_probs=72.1
Q ss_pred hhhccceeeCCCCCCCCChhhhhh-hHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCC-CCcCCHHHHH--
Q 008923 94 LEAQAKVCTGPTQTRPLREDEAFK-VLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPE-ATQWSEGERR-- 167 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~-~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~-~~~~s~~e~~-- 167 (548)
++.-..|++++++..+-+++.--. .++. |+++ ..+.|.+| |+|||.|..++||.+.+. ..+. +.-|.+.+.+
T Consensus 50 l~~~dgvii~Ggp~~~~d~~~wi~~~~~~-i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~-~~G~~e~G~~~i~~~~~ 127 (239)
T PRK06490 50 LEDHAGAVIFGGPMSANDPDDFIRREIDW-ISVPLKENKPFLGICLGAQMLARHLGARVAPH-PDGRVEIGYYPLRPTEA 127 (239)
T ss_pred ccccCEEEEECCCCCCCCCchHHHHHHHH-HHHHHHCCCCEEEECHhHHHHHHHcCCEeecC-CCCCCccceEEeEECCC
Confidence 344455777779888875543212 3444 6654 55799999 999999999999999987 2211 2222211111
Q ss_pred --HHHhh------hhHHhhhCCCceEEEe-CCCCCccccCCCC---CCCCCCCCC
Q 008923 168 --AMNTF------WPLLMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDP 210 (548)
Q Consensus 168 --~~~~~------~~~l~~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~~~ 210 (548)
.+..+ |-...-.||+....+| ++++.+|+++++. |.+|.|...
T Consensus 128 ~~~~~~~~~~~~~~H~d~~~lP~~~~~LA~s~~~~~qa~~~~~~v~g~QfHPE~~ 182 (239)
T PRK06490 128 GRALMHWPEMVYHWHREGFDLPAGAELLATGDDFPNQAFRYGDNAWGLQFHPEVT 182 (239)
T ss_pred cccccCCCCEEEEECCccccCCCCCEEEEeCCCCCeEEEEeCCCEEEEeeCccCC
Confidence 11111 1111146899999998 8899999999864 667754433
No 47
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.16 E-value=6.6e-05 Score=71.17 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=79.8
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhhc-CCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----H
Q 008923 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----R 167 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~ 167 (548)
++.-..|+++|+++.|.+ ....++. +++++. ++|.+| |+|||.|.-.||+.+.+....+.++....... .
T Consensus 40 ~~~~d~iii~Gg~~~~~d---~~~~~~~-i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~~~ 115 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYD---IEGLIEL-IREARERKIPILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPEDP 115 (192)
T ss_dssp TTTSSEEEEECESSSTTS---HHHHHHH-HHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEEHG
T ss_pred hcCCCEEEECCcCCcccc---ccccccc-cccccccceEEEEEeehhhhhHHhcCCcccccccccccccccccccccccc
Confidence 455567899999999994 5556666 888887 999999 99999999999999998844665553321000 0
Q ss_pred HHHhhhhHH---------hhh---CCCceEEEe-CCCC-CccccCCCCC----CCCCCCCCccC
Q 008923 168 AMNTFWPLL---------MRA---LPPDVIFIA-DPEG-SIMGGGGSIG----PHYSGNDPREM 213 (548)
Q Consensus 168 ~~~~~~~~l---------~~~---lp~~~~f~a-~p~g-~iMg~~~~~g----~~~~~~~~~~~ 213 (548)
.+..+...+ +.. +|+.+.++| +.++ .+|+++++.. .+|.|......
T Consensus 116 ~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~ 179 (192)
T PF00117_consen 116 LFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSP 179 (192)
T ss_dssp GGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTST
T ss_pred cccccccccccccccceeeecccccccccccccccccccccccccccccEEEEEecCCcCCCCC
Confidence 111110110 034 899999998 6676 8999999985 47765555443
No 48
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.09 E-value=0.00059 Score=68.30 Aligned_cols=112 Identities=11% Similarity=-0.039 Sum_probs=69.6
Q ss_pred ceeeCCCCCCCCChhhh-hhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH-------HH
Q 008923 99 KVCTGPTQTRPLREDEA-FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER-------RA 168 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a-~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~-------~~ 168 (548)
.|+++.++....++..= ....+. |+.+ ..++|++| |.|||.+.-++||.+.+. ....+.-|.+.+. ..
T Consensus 57 gvvi~Gg~~~~~d~~~w~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~g~e~G~~~v~~~~~~~~~~l 134 (237)
T PRK09065 57 GVIITGSWAMVTDRLDWSERTADW-LRQAAAAGMPLLGICYGHQLLAHALGGEVGYN-PAGRESGTVTVELHPAAADDPL 134 (237)
T ss_pred EEEEeCCCcccCCCchhHHHHHHH-HHHHHHCCCCEEEEChhHHHHHHHcCCccccC-CCCCccceEEEEEccccccChh
Confidence 37777777655432111 223344 5554 35799999 999999999999999887 3323322332211 12
Q ss_pred HHhhhhH---------HhhhCCCceEEEe-CCCCCccccCCCC---CCCCCCCCCcc
Q 008923 169 MNTFWPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPRE 212 (548)
Q Consensus 169 ~~~~~~~---------l~~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~~~~~ 212 (548)
+..+.+. -+..||+.+.++| ++++.++|++++. |++|.|....+
T Consensus 135 ~~~~~~~~~v~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~~~i~gvQfHPE~~~~ 191 (237)
T PRK09065 135 FAGLPAQFPAHLTHLQSVLRLPPGAVVLARSAQDPHQAFRYGPHAWGVQFHPEFTAH 191 (237)
T ss_pred hhcCCccCcEeeehhhhhhhCCCCCEEEEcCCCCCeeEEEeCCCEEEEEeCCcCCHH
Confidence 2221111 1256999999998 7789999999874 66775544333
No 49
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.75 E-value=0.004 Score=62.69 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=69.4
Q ss_pred hccceeeCCCCCCCCCh--hh-hh-hhHH-H---HHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH
Q 008923 96 AQAKVCTGPTQTRPLRE--DE-AF-KVLD-T---ILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE 165 (548)
Q Consensus 96 ~~~~v~~gp~~~~P~~~--~~-a~-~~~~-~---~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e 165 (548)
.=..|+++.++..|-+. ++ -. .-+. . .++.+ ..++|++| |+|||.|...|||.+.+. .+.+--|.+.+
T Consensus 51 ~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~--~g~e~G~~~v~ 128 (242)
T PRK07567 51 DYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRT--YGEPVGAVTVS 128 (242)
T ss_pred hccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecC--CCCcCccEEEE
Confidence 33568888888887654 11 11 0111 1 12222 46799999 999999999999999884 22222222211
Q ss_pred H-------HHHHhhhhH---------HhhhCCCceEEEe-CCCCCccccCCCC---CCCCCCCCCccC
Q 008923 166 R-------RAMNTFWPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPREM 213 (548)
Q Consensus 166 ~-------~~~~~~~~~---------l~~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~~~~~~ 213 (548)
. ..+..+... -+..||+.+.++| ++++.+++++++. |++|.|.-..++
T Consensus 129 l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~~~~~gvQfHPE~~~~~ 196 (242)
T PRK07567 129 LTDAGRADPLLAGLPDTFTAFVGHKEAVSALPPGAVLLATSPTCPVQMFRVGENVYATQFHPELDADG 196 (242)
T ss_pred ECCccCCChhhcCCCCceEEEeehhhhhhhCCCCCEEEEeCCCCCEEEEEeCCCEEEEEeCCcCCHHH
Confidence 1 122222111 1246999999998 7888899998753 677755444443
No 50
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.74 E-value=0.0036 Score=60.34 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=58.9
Q ss_pred hHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhCCCceEEEe-CCCCCc
Q 008923 118 VLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIA-DPEGSI 194 (548)
Q Consensus 118 ~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~lp~~~~f~a-~p~g~i 194 (548)
..+. ++++ ...+|++| |+|+|.|..+|||.+.|. + .-|+ +--..+..+|+.+.++| ++||.|
T Consensus 89 ~~~~-~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---~--~v~~---------~H~~~v~~~~~~~~vla~~~d~~v 153 (189)
T cd01745 89 ELAL-LRAALERGKPILGICRGMQLLNVALGGTLYQD---I--RVNS---------LHHQAIKRLADGLRVEARAPDGVI 153 (189)
T ss_pred HHHH-HHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC---C--ceec---------hHHHHHhhcCCCCEEEEECCCCcE
Confidence 3444 6666 46799999 999999999999999887 2 1122 22223467899999998 889999
Q ss_pred cccCCCC-----CCCCCCCCCc
Q 008923 195 MGGGGSI-----GPHYSGNDPR 211 (548)
Q Consensus 195 Mg~~~~~-----g~~~~~~~~~ 211 (548)
++++++. |++|.|....
T Consensus 154 ea~~~~~~~~~~gvQfHPE~~~ 175 (189)
T cd01745 154 EAIESPDRPFVLGVQWHPEWLA 175 (189)
T ss_pred EEEEeCCCCeEEEEecCCCcCc
Confidence 9999874 6677665543
No 51
>PRK00758 GMP synthase subunit A; Validated
Probab=96.67 E-value=0.0015 Score=62.21 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=66.9
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH----HHHHHhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE----RRAMNTF 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e----~~~~~~~ 172 (548)
..|++++++. .+.+....+. |+. .++|++| |+|||.|..++|+.+.|. +.++++. .+-+ ...+..+
T Consensus 43 dgivi~Gg~~----~~~~~~~~~~-l~~--~~~PilGIC~G~Q~L~~a~Gg~v~~~-~~~~~g~-~~i~~~~~~~l~~~~ 113 (184)
T PRK00758 43 DGLILSGGPD----IERAGNCPEY-LKE--LDVPILGICLGHQLIAKAFGGEVGRG-EYGEYAL-VEVEILDEDDILKGL 113 (184)
T ss_pred CEEEECCCCC----hhhccccHHH-HHh--CCCCEEEEeHHHHHHHHhcCcEEecC-CCceeee-EEEEEcCCChhhhCC
Confidence 4578877773 2333444444 553 4799999 999999999999998876 5555543 2111 1122221
Q ss_pred hhH---------HhhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCC
Q 008923 173 WPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 173 ~~~---------l~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
.+. -+..||+.+.++| +++|.+++++++. |++|.|..
T Consensus 114 ~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~~~~~g~QfHPE~ 164 (184)
T PRK00758 114 PPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQFHPEV 164 (184)
T ss_pred CCCcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECCCCEEEEEcCCcc
Confidence 111 1246899989998 8899999998754 66776554
No 52
>PLN02347 GMP synthetase
Probab=96.55 E-value=0.0019 Score=72.17 Aligned_cols=185 Identities=11% Similarity=0.030 Sum_probs=104.1
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH---HHHHHHHhhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE---GERRAMNTFW 173 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~---~e~~~~~~~~ 173 (548)
.|++++||..+..++ +....+.|++.+ ...+|++| |+|||.|+.+||+.+.+. .-+++|.-+- ..........
T Consensus 56 gIILsGGP~sv~~~~-~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~-~~~e~G~~~v~i~~~~~Lf~~l~ 133 (536)
T PLN02347 56 VVILSGGPHSVHVEG-APTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPG-EKQEYGRMEIRVVCGSQLFGDLP 133 (536)
T ss_pred EEEECCCCCcccccC-CchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEec-CCcccceEEEEEcCCChhhhcCC
Confidence 588888988776332 222334445444 24799999 999999999999999987 3455654430 0111111111
Q ss_pred hH-----------HhhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCCccC----cHHHHHHHHhcCC-CCCH-H
Q 008923 174 PL-----------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREM----RLVGALREVLAGG-HLGY-E 231 (548)
Q Consensus 174 ~~-----------l~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~~~~----~~~~~L~kL~~G~-~LS~-e 231 (548)
.. -+..||+.+.++| +.+|.||++.|+. |++|.|...... .++.++.++..-+ +.+. +
T Consensus 134 ~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~ 213 (536)
T PLN02347 134 SGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQD 213 (536)
T ss_pred CCceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcch
Confidence 10 0136888889998 8899999998765 778876655432 2445554444332 3331 1
Q ss_pred HHHHHHHHhccC-ccC-----CCCCCCCHHHHHHHHHH-h--hhcC-------CCHHHHHHHHHHHHhhC
Q 008923 232 EVQGVLRDVLPL-QVD-----NKAPGVSESLLSAFLIG-Q--RMNR-------ETDRELKAYCLAFDDEL 285 (548)
Q Consensus 232 EA~~am~~IL~~-~~~-----~~~G~~sdaQigAFLia-L--R~KG-------ET~eEIaGfa~Amr~~~ 285 (548)
...+.++.+-.. ..+ ..+|.++-+-+++++.- + ++.. ....|....++.+.+..
T Consensus 214 ~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~l 283 (536)
T PLN02347 214 VLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDL 283 (536)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHc
Confidence 111222222210 001 12788887777776654 2 2221 33457666666665544
No 53
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.44 E-value=0.0027 Score=59.91 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=68.9
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH---HHHHHHHhhhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE---GERRAMNTFWP 174 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~---~e~~~~~~~~~ 174 (548)
.|+++.++..+.+++ +....+.+++ ...|.+| |+|+|.|..++|+.+.+. .-|+.|..+- .+...+..+..
T Consensus 44 gvIl~Gg~~~~~~~~-~~~~~~~~~~---~~~PilGIC~G~Qll~~~~gg~v~~~-~~~~~G~~~v~~~~~~~l~~~~~~ 118 (181)
T cd01742 44 GIILSGGPSSVYEED-APRVDPEIFE---LGVPVLGICYGMQLIAKALGGKVERG-DKREYGKAEIEIDDSSPLFEGLPD 118 (181)
T ss_pred EEEECCCcccccccc-cchhhHHHHh---cCCCEEEEcHHHHHHHHhcCCeEEeC-CCCcceEEEEEecCCChhhcCCCC
Confidence 377777887776443 2333444333 2899999 999999999999988876 4455542220 01111111111
Q ss_pred H---------HhhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCCc
Q 008923 175 L---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPR 211 (548)
Q Consensus 175 ~---------l~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~~ 211 (548)
. -+..||+.+.++| ++++.|++++++. |.+|.|....
T Consensus 119 ~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~~~~~g~QfHPE~~~ 169 (181)
T cd01742 119 EQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQFHPEVTH 169 (181)
T ss_pred ceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCCCcEEEEEcCCcccc
Confidence 1 1246899999997 7789999999875 6677655443
No 54
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0075 Score=64.26 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=72.5
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhcCC-Cccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh-hhHH
Q 008923 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGDL-KDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF-WPLL 176 (548)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l-~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~-~~~l 176 (548)
|-+|=||+-|. ..-..+++ +|++.+.. |..| |+|||-++.++||+|.|- +|=-||-==+ ..++. |+-.
T Consensus 224 iflSNGPGDP~---~~~~~i~~-ik~l~~~~iPifGICLGHQllalA~Ga~T~Km-kFGHrG~NhP----V~dl~tgrv~ 294 (368)
T COG0505 224 IFLSNGPGDPA---PLDYAIET-IKELLGTKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHP----VKDLDTGRVY 294 (368)
T ss_pred EEEeCCCCChh---HHHHHHHH-HHHHhccCCCeEEEcHHHHHHHHhcCCceeec-ccCCCCCCcC----cccccCCeEE
Confidence 34444455554 55567888 88898887 9999 999999999999999998 7754442110 11110 1111
Q ss_pred h-----------hhCCCc--eEEEeCCCCCccccCCCCCCCCCCCCCccC
Q 008923 177 M-----------RALPPD--VIFIADPEGSIMGGGGSIGPHYSGNDPREM 213 (548)
Q Consensus 177 ~-----------~~lp~~--~~f~a~p~g~iMg~~~~~g~~~~~~~~~~~ 213 (548)
. +.++.+ +.+..--||++=|++|+..|-|.-|..||.
T Consensus 295 ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEA 344 (368)
T COG0505 295 ITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEA 344 (368)
T ss_pred EEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCC
Confidence 1 356653 667778899999999999987776666663
No 55
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=95.65 E-value=0.0092 Score=60.53 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=57.1
Q ss_pred HHHHh-hcCCCccc-cccHHHHhHHHHhhhhccc----cCCCCCcCCHH---------------HHHHHH-hh-h-----
Q 008923 122 ILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRAN----AFPEATQWSEG---------------ERRAMN-TF-W----- 173 (548)
Q Consensus 122 ~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~----~~p~~~~~s~~---------------e~~~~~-~~-~----- 173 (548)
+|+.+ ..++|++| |.|+|.|..+||+.+.+.- ....|++..+. +...+. .+ +
T Consensus 99 li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~~~~~ 178 (254)
T PRK11366 99 LINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSNFW 178 (254)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCCCceEE
Confidence 36664 46899999 9999999999999999761 00023221100 000111 11 1
Q ss_pred -----hHHhhhCCCceEEEe-CCCCCccccCCCC-----CCCCCCCC
Q 008923 174 -----PLLMRALPPDVIFIA-DPEGSIMGGGGSI-----GPHYSGND 209 (548)
Q Consensus 174 -----~~l~~~lp~~~~f~a-~p~g~iMg~~~~~-----g~~~~~~~ 209 (548)
-+-++.||+.+.++| ++||.||++.++. |++|.|..
T Consensus 179 Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~ 225 (254)
T PRK11366 179 VNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEW 225 (254)
T ss_pred eehHHHHHHhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCc
Confidence 112368999999998 9999999998764 66775554
No 56
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=95.26 E-value=0.029 Score=53.74 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=66.5
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHH-hhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH----HHHHHhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE----RRAMNTF 172 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~-~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e----~~~~~~~ 172 (548)
.|++..++..+-..+. .+. ++. .....|.+| |+|+|.|..++|+.+.+. ..++.+ |.+-. -..+..+
T Consensus 44 glii~Gg~~~~~~~~~----~~~-i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~-~~~~~g-~~~v~~~~~~~l~~~~ 116 (188)
T TIGR00888 44 GIILSGGPSSVYAENA----PRA-DEKIFELGVPVLGICYGMQLMAKQLGGEVGRA-EKREYG-KAELEILDEDDLFRGL 116 (188)
T ss_pred EEEECCCCCCcCcCCc----hHH-HHHHHhCCCCEEEECHHHHHHHHhcCceEecC-CCccce-eEEEEEecCCHhhcCC
Confidence 4777778877764332 222 344 345889999 999999999999988876 555554 32111 0111111
Q ss_pred hhHH---------hhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCC
Q 008923 173 WPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 173 ~~~l---------~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
...+ +..||+.+.+++ ++++.++++.++. |.+|.|..
T Consensus 117 ~~~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~~~~~g~QfHPE~ 167 (188)
T TIGR00888 117 PDESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEV 167 (188)
T ss_pred CCCcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECCCCEEEEeeCCcc
Confidence 1111 036888988887 7788999999876 55665443
No 57
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=94.34 E-value=0.065 Score=50.97 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=68.3
Q ss_pred hhhccceeeCCCCCCC-CChhh-hhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH-
Q 008923 94 LEAQAKVCTGPTQTRP-LREDE-AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA- 168 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P-~~~~~-a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~- 168 (548)
++.=-.|+++.++..+ ..... .....+. |+.+ ....|..| |.|+|.++..+|+.+.|. .+..+..|.+-.-+.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~-i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~-~~~~~~g~~~v~~~~~ 121 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKEL-IRQALAAGKPVLGICLGHQLLARALGGKVGRN-PKGWEIGWFPVTLTEA 121 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHH-HHHHHHCCCCEEEECccHHHHHHHhCCEEecC-CCcceeEEEEEEeccc
Confidence 3444556777677666 21111 1233444 6655 34699999 999999999999998887 433233343221111
Q ss_pred ------HHhhhhHH---------hhhCCCceEEEe-CCCCCccccCCCC---CCCCCCC
Q 008923 169 ------MNTFWPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGN 208 (548)
Q Consensus 169 ------~~~~~~~l---------~~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~ 208 (548)
+..+...+ +..||+.+.+++ ++++.|++++++. |.+|.|.
T Consensus 122 ~~~~~l~~~~~~~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~~~~~g~QfHPE 180 (188)
T cd01741 122 GKADPLFAGLPDEFPVFHWHGDTVVELPPGAVLLASSEACPNQAFRYGDRALGLQFHPE 180 (188)
T ss_pred cccCchhhcCCCcceEEEEeccChhhCCCCCEEeecCCCCCcceEEecCCEEEEccCch
Confidence 00000111 145899999998 8899999999763 6677553
No 58
>PRK05665 amidotransferase; Provisional
Probab=94.09 E-value=0.14 Score=51.67 Aligned_cols=138 Identities=18% Similarity=0.082 Sum_probs=77.7
Q ss_pred hhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH------
Q 008923 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER------ 166 (548)
Q Consensus 95 ~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~------ 166 (548)
+-.+-|++|= +.-.-+++.--.-+...||++. ...|.+| |.|||.|+-++||.+.+. |. -|+.+-.
T Consensus 57 ~~dgiiitGs-~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~---~~--G~e~G~~~~~~~~ 130 (240)
T PRK05665 57 KFDAYLVTGS-KADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERA---SQ--GWGVGIHRYQLAA 130 (240)
T ss_pred cCCEEEECCC-CCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC---CC--CcccceEEEEecC
Confidence 3455556553 3333333332233444466653 4689999 999999999999999886 31 1321110
Q ss_pred --HHHHhhhhHH---------hhhCCCceEEEe-CCCCCccccCCCC---CCCCCCCCCccCcHHHHHHHHhcCCCCCHH
Q 008923 167 --RAMNTFWPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPREMRLVGALREVLAGGHLGYE 231 (548)
Q Consensus 167 --~~~~~~~~~l---------~~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~~~~~~~~~~~L~kL~~G~~LS~e 231 (548)
.++..+.+.+ +..||+....+| ++...+-+++... |.+|.|....++ ++.+|+. +.+.+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~~~~~g~QfHPE~~~~~-~~~~l~~--~~~~~~~~ 207 (240)
T PRK05665 131 HAPWMSPAVTELTLLISHQDQVTALPEGATVIASSDFCPFAAYHIGDQVLCFQGHPEFVHDY-SRALLDL--RQEHLGEE 207 (240)
T ss_pred CCccccCCCCceEEEEEcCCeeeeCCCCcEEEEeCCCCcEEEEEeCCCEEEEecCCcCcHHH-HHHHHHH--hhhhcCHH
Confidence 0111111111 146899988887 6666666665432 566644333332 3444432 22458888
Q ss_pred HHHHHHHHhc
Q 008923 232 EVQGVLRDVL 241 (548)
Q Consensus 232 EA~~am~~IL 241 (548)
++.+.++.+.
T Consensus 208 ~~~~~~~~l~ 217 (240)
T PRK05665 208 VYSKGVASLA 217 (240)
T ss_pred HHHHHHHHcC
Confidence 8888887775
No 59
>PRK00074 guaA GMP synthase; Reviewed
Probab=93.89 E-value=0.047 Score=60.78 Aligned_cols=159 Identities=14% Similarity=0.049 Sum_probs=91.2
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTF 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~~~~~~ 172 (548)
..|+++.|+..+.+++ +-.....+++ ..+|++| |.|+|.|...||+.+.+. .-++.| |.+.+. ..+..+
T Consensus 48 dgIIlsGGp~sv~~~~-~p~~~~~i~~---~~~PvLGIC~G~QlLa~~lGG~V~~~-~~~e~G-~~~i~i~~~~~Lf~~l 121 (511)
T PRK00074 48 KGIILSGGPASVYEEG-APRADPEIFE---LGVPVLGICYGMQLMAHQLGGKVERA-GKREYG-RAELEVDNDSPLFKGL 121 (511)
T ss_pred CEEEECCCCcccccCC-CccccHHHHh---CCCCEEEECHHHHHHHHHhCCeEEec-CCcccc-eEEEEEcCCChhhhcC
Confidence 3577777888776433 3444444333 4799999 999999999999999887 334444 222111 122222
Q ss_pred hhHH---------hhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCCcc----CcHHHHHHHHh-cCCCCCHHH-
Q 008923 173 WPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE----MRLVGALREVL-AGGHLGYEE- 232 (548)
Q Consensus 173 ~~~l---------~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~~~----~~~~~~L~kL~-~G~~LS~eE- 232 (548)
.... +..+|+.+.++| ++++.++++.++. |++|.|..... ..++.++.++. ..++.+.++
T Consensus 122 ~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~ 201 (511)
T PRK00074 122 PEEQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENF 201 (511)
T ss_pred CCceEEEEECCeEEEecCCCcEEEEEeCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHH
Confidence 1111 146899999998 8889999998654 66776655432 12445554443 223454322
Q ss_pred ---HHHHHHHhccCcc--CCCCCCCCHHHHHHHHH
Q 008923 233 ---VQGVLRDVLPLQV--DNKAPGVSESLLSAFLI 262 (548)
Q Consensus 233 ---A~~am~~IL~~~~--~~~~G~~sdaQigAFLi 262 (548)
..+-++..+.-.. -.-+|.++-.-+++++.
T Consensus 202 ~~~~~~~l~~~v~~~~vlva~SGGvDS~vll~ll~ 236 (511)
T PRK00074 202 IEEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLH 236 (511)
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCccHHHHHHHHH
Confidence 2222333220000 01267777777777664
No 60
>PRK08250 glutamine amidotransferase; Provisional
Probab=93.77 E-value=0.053 Score=54.43 Aligned_cols=112 Identities=13% Similarity=-0.050 Sum_probs=66.3
Q ss_pred cceeeCCCCCCCCC--hhhh----hhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH--
Q 008923 98 AKVCTGPTQTRPLR--EDEA----FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-- 167 (548)
Q Consensus 98 ~~v~~gp~~~~P~~--~~~a----~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~-- 167 (548)
.-|+++-++..|-. .+.- -...+. ||++ ....|.+| |.|+|.++..|||.+.+. +.++.|.. +.+.+
T Consensus 47 d~vii~GGp~~~~~~~~~~p~~~~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~~e~G~~-~v~lt~~ 123 (235)
T PRK08250 47 DLLIVMGGPQSPRTTREECPYFDSKAEQRL-INQAIKAGKAVIGVCLGAQLIGEALGAKYEHS-PEKEIGYF-PITLTEA 123 (235)
T ss_pred CEEEECCCCCChhhccccccccchHHHHHH-HHHHHHcCCCEEEEChhHHHHHHHhCceeccC-CCCceeEE-EEEEccc
Confidence 34666666666542 1111 122333 6655 45899999 999999999999999987 33444432 22211
Q ss_pred -----HHHhhhhHHh--------hhCCCceEEEe-CCCCCccccCCCC---CCCCCCCCCcc
Q 008923 168 -----AMNTFWPLLM--------RALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPRE 212 (548)
Q Consensus 168 -----~~~~~~~~l~--------~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~~~~~ 212 (548)
++..+...+. -.||+....+| ++...+.+.+... |++|.|....+
T Consensus 124 g~~d~l~~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~~~qa~~~~~~~~g~QfHPE~~~~ 185 (235)
T PRK08250 124 GLKDPLLSHFGSTLTVGHWHNDMPGLTDQAKVLATSEGCPRQIVQYSNLVYGFQCHMEFTVE 185 (235)
T ss_pred cccCchhhcCCCCcEEEEEecceecCCCCCEEEECCCCCCceEEEeCCCEEEEeecCcCCHH
Confidence 2222222221 36888888887 5555667776543 77775544433
No 61
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=93.13 E-value=0.049 Score=52.87 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=68.8
Q ss_pred hhccceeeCCCCCCCCChh-hhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCC----HHHH--
Q 008923 95 EAQAKVCTGPTQTRPLRED-EAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EGER-- 166 (548)
Q Consensus 95 ~~~~~v~~gp~~~~P~~~~-~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s----~~e~-- 166 (548)
+.++ |+++.+++.+.... .--...+.|.+......|.+| |.|+|.++..+|+..+...+.+++|... ..+.
T Consensus 43 ~~d~-iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~ 121 (200)
T PRK13527 43 DCDA-LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGR 121 (200)
T ss_pred cCCE-EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccC
Confidence 4444 55555766553211 111246775555557789999 9999999999998655543444333211 0000
Q ss_pred ---------------HHHH-hhhhH-HhhhCCCceEEEe-CCCCCccccCCCC--CCCCCCCCCccCcHHHHH
Q 008923 167 ---------------RAMN-TFWPL-LMRALPPDVIFIA-DPEGSIMGGGGSI--GPHYSGNDPREMRLVGAL 219 (548)
Q Consensus 167 ---------------~~~~-~~~~~-l~~~lp~~~~f~a-~p~g~iMg~~~~~--g~~~~~~~~~~~~~~~~L 219 (548)
..+. .+|-. .+..||+.+.++| ++++ +|+++... |.+|.|.-..+.++-+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~lp~~~~~la~~~~~-~~a~~~~~~~g~QfHPE~~~~~~l~~~f 193 (200)
T PRK13527 122 QRDSFEAEIDLSGLDGPFHAVFIRAPAITKVGGDVEVLAKLDDR-IVAVEQGNVLATAFHPELTDDTRIHEYF 193 (200)
T ss_pred ccccEEEeEeccccCCcceEEEEccccccccCCCeEEEEEECCE-EEEEEECCEEEEEeCCCCCCCCHHHHHH
Confidence 0011 00111 2257899999998 5555 66776443 778876655554444433
No 62
>PRK08136 glycosyl transferase family protein; Provisional
Probab=92.53 E-value=0.78 Score=48.53 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=78.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (548)
.+|+-||..+|+|+.|||..+++.|+ .|.++..|+|||+-||-+|+ . |.+|-+- |.+.+.
T Consensus 8 ~~l~~G~~~~~~Lt~eEA~~~~~~il---------~g~~~~~qi~AfL~alr~Kg---E-----T~eElaG---~~~a~~ 67 (317)
T PRK08136 8 KEIGRGKNGARDLDRDTARALYGAML---------DGRVPDLELGAILIALRIKG---E-----SEAEMLG---FLDAMQ 67 (317)
T ss_pred HHHHCCCCCCCCcCHHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHhC---C-----CHHHHHH---HHHHHH
Confidence 36788999999999999999999976 24778889999999999999 5 5555443 333333
Q ss_pred hh---C--CCc---eEEEeCCCCCccccCCCC---------CCCC--CCCCCcc--CcHHHHHHHHhcCCCCCHHHHHHH
Q 008923 178 RA---L--PPD---VIFIADPEGSIMGGGGSI---------GPHY--SGNDPRE--MRLVGALREVLAGGHLGYEEVQGV 236 (548)
Q Consensus 178 ~~---l--p~~---~~f~a~p~g~iMg~~~~~---------g~~~--~~~~~~~--~~~~~~L~kL~~G~~LS~eEA~~a 236 (548)
+. + |.+ ..-+++-+|+---+.-++ |+.- .|++... .--.++++.+.---+++.+|+...
T Consensus 68 ~~~~~~~~~~~~~~~iD~~gtgGd~~t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~~~~ 147 (317)
T PRK08136 68 AHTIPLTPPAGRPMPVVIPSYNGARKQANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQAQAK 147 (317)
T ss_pred HhCCcCCCCCCCCceEEeCCCCCCCCCcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Confidence 21 1 211 333445555421111110 2200 1222222 335788888887778999999999
Q ss_pred HHHh
Q 008923 237 LRDV 240 (548)
Q Consensus 237 m~~I 240 (548)
++..
T Consensus 148 l~~~ 151 (317)
T PRK08136 148 LAEG 151 (317)
T ss_pred HHhc
Confidence 9863
No 63
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=91.93 E-value=0.15 Score=50.57 Aligned_cols=47 Identities=11% Similarity=-0.176 Sum_probs=34.1
Q ss_pred ccceeeCCCCCCCCChhhhh------hhHHHHHHHhhcCCCccc-cccHHHHhHHHH
Q 008923 97 QAKVCTGPTQTRPLREDEAF------KVLDTILRSAKGDLKDEE-EVSKAQLGAFFS 146 (548)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~a~------~~~~~~l~~~~~~l~~~~-~~~~~q~gaffg 146 (548)
++..++.||++.|- .+. ..++.|.+......|.+| |+|+|.|+-.++
T Consensus 39 ~~d~iIlPG~g~~~---~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~ 92 (210)
T CHL00188 39 QVHALVLPGVGSFD---LAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSE 92 (210)
T ss_pred hCCEEEECCCCchH---HHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccc
Confidence 35567789998874 332 234666666778899999 999999987543
No 64
>PRK07053 glutamine amidotransferase; Provisional
Probab=91.72 E-value=0.46 Score=47.79 Aligned_cols=112 Identities=10% Similarity=0.072 Sum_probs=62.9
Q ss_pred eeeCCCCCCCCChhhh---hhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcC----CH-HHHHHH
Q 008923 100 VCTGPTQTRPLREDEA---FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQW----SE-GERRAM 169 (548)
Q Consensus 100 v~~gp~~~~P~~~~~a---~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~----s~-~e~~~~ 169 (548)
|++..++..+-++++. ...++. ||.+ ....|.+| |+|||.++..+|+.+.+. ..++-|-. ++ +...-+
T Consensus 51 lii~Ggp~~~~d~~~~p~~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~~e~G~~~i~~t~~g~~~pl 128 (234)
T PRK07053 51 LVVLGGPIGVYDDELYPFLAPEIAL-LRQRLAAGLPTLGICLGAQLIARALGARVYPG-GQKEIGWAPLTLTDAGRASPL 128 (234)
T ss_pred EEECCCCCCCCCCCcCCcHHHHHHH-HHHHHHCCCCEEEECccHHHHHHHcCCcEecC-CCCeEeEEEEEEeccccCChh
Confidence 5555566655543221 233455 5544 45899999 999999999999999885 33332211 11 111111
Q ss_pred Hhh--------hhHHhhhCCCceEEEe-CCCCCccccCCC--C-CCCCCCCCCccC
Q 008923 170 NTF--------WPLLMRALPPDVIFIA-DPEGSIMGGGGS--I-GPHYSGNDPREM 213 (548)
Q Consensus 170 ~~~--------~~~l~~~lp~~~~f~a-~p~g~iMg~~~~--~-g~~~~~~~~~~~ 213 (548)
..+ |-+-.-.||+....+| ++.....+.+.. + |++|.+.-..++
T Consensus 129 ~~~~~~~~~~~~H~d~~~lP~ga~~La~s~~~~~qaf~~g~~~~g~QfHpE~~~~~ 184 (234)
T PRK07053 129 RHLGAGTPVLHWHGDTFDLPEGATLLASTPACRHQAFAWGNHVLALQFHPEAREDR 184 (234)
T ss_pred hcCCCcceEEEEeCCEEecCCCCEEEEcCCCCCeeEEEeCCCEEEEeeCccCCHHH
Confidence 111 1111126888888887 566566666643 2 778855444443
No 65
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=91.06 E-value=0.11 Score=50.51 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=51.0
Q ss_pred hHHHHHHHhhcCCCccc-cccHHHHhHH------------HHhhhhccccC-----CCCCcCCHHHHHHHHhhhhHHhh-
Q 008923 118 VLDTILRSAKGDLKDEE-EVSKAQLGAF------------FSAMTIRANAF-----PEATQWSEGERRAMNTFWPLLMR- 178 (548)
Q Consensus 118 ~~~~~l~~~~~~l~~~~-~~~~~q~gaf------------fga~~~r~~~~-----p~~~~~s~~e~~~~~~~~~~l~~- 178 (548)
..+.|.+......|.+| |.|+|.++-. +++.+.|. +. ..|..|++.+.+. ...|++
T Consensus 61 ~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~-~~~~~~~~~~~g~~~i~~~~----~~~l~~~ 135 (205)
T PRK13141 61 LDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRF-PPEEGLKVPHMGWNQLELKK----ESPLLKG 135 (205)
T ss_pred hHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEc-CCCCCCcccEecCccceeCC----CChhhhC
Confidence 45663333457899999 9999999986 67888886 21 2344555333221 112222
Q ss_pred ---------------hCCCceEEEe-CCCC-CccccCCCC---CCCCCCCC
Q 008923 179 ---------------ALPPDVIFIA-DPEG-SIMGGGGSI---GPHYSGND 209 (548)
Q Consensus 179 ---------------~lp~~~~f~a-~p~g-~iMg~~~~~---g~~~~~~~ 209 (548)
.+|+.+.+++ +++| .++++.++. |++|.|..
T Consensus 136 l~~~~~v~~~Hs~~v~~~~~~~v~a~~~~~~~~~a~~~~~~i~GvQfHPE~ 186 (205)
T PRK13141 136 IPDGAYVYFVHSYYADPCDEEYVAATTDYGVEFPAAVGKDNVFGAQFHPEK 186 (205)
T ss_pred CCCCCEEEEECeeEeccCCcCeEEEEEeCCcEEEEEEecCCEEEEeCCCcc
Confidence 3455566666 5555 566664433 66775543
No 66
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=90.60 E-value=0.24 Score=48.23 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=30.2
Q ss_pred ceeeCCCCCCCCChhhhhhh------HHHHHHHh-hcCCCccc-cccHHHHhHH
Q 008923 99 KVCTGPTQTRPLREDEAFKV------LDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~------~~~~l~~~-~~~l~~~~-~~~~~q~gaf 144 (548)
.|++ ||++.|. ++... .+.|.+.+ ...+|++| |+|.|.|+-.
T Consensus 40 ~lil-PG~g~~~---~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 40 KLLL-PGVGSFK---EAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred EEEE-CCCCchH---HHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 3666 9999886 55443 35544433 45899999 9999999976
No 67
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=89.60 E-value=0.26 Score=47.77 Aligned_cols=55 Identities=7% Similarity=-0.163 Sum_probs=38.0
Q ss_pred cceeeCCCCCCCCChhhh---hhhHHHHHHHhhcCCCccc-cccHHHHhHH-----------HHhhhhcc
Q 008923 98 AKVCTGPTQTRPLREDEA---FKVLDTILRSAKGDLKDEE-EVSKAQLGAF-----------FSAMTIRA 152 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a---~~~~~~~l~~~~~~l~~~~-~~~~~q~gaf-----------fga~~~r~ 152 (548)
....|.||++.|-...+. ....+.|.+......|++| |+|+|.|+.. +++.+.|.
T Consensus 38 ~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~ 107 (199)
T PRK13181 38 ADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRF 107 (199)
T ss_pred CCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEc
Confidence 444566888776422111 1234664444567899999 9999999998 78899886
No 68
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=89.42 E-value=0.31 Score=47.29 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=27.9
Q ss_pred HHHHHH-HhhcCCCccc-cccHHHHhHH------------HHhhhhcc
Q 008923 119 LDTILR-SAKGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (548)
Q Consensus 119 ~~~~l~-~~~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (548)
++.++| .+..+.|++| |.|+|.|+-. |++.+.|.
T Consensus 60 ~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~ 107 (196)
T TIGR01855 60 LDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKL 107 (196)
T ss_pred cHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEEC
Confidence 566546 4467799999 9999999998 78998887
No 69
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=88.58 E-value=3 Score=35.31 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLA 280 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~A 280 (548)
++++|++|-+|. +.++.+.-|...+ +++++.+|+..=-.|=--|.+++|+.-+|+.
T Consensus 2 LK~ii~~Lh~G~--~~e~vk~~F~~~~--------~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 2 LKEIIKRLHEGE--DPEEVKEEFKKLF--------SDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 789999999997 7899999999999 6799999999988888899999999999874
No 70
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=88.33 E-value=0.21 Score=48.25 Aligned_cols=51 Identities=10% Similarity=-0.051 Sum_probs=34.6
Q ss_pred eeeCCCCCCCCChh---hhhhhHHHHHHHh-hcCCCccc-cccHHHHhHH------------HHhhhhcc
Q 008923 100 VCTGPTQTRPLRED---EAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (548)
Q Consensus 100 v~~gp~~~~P~~~~---~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (548)
|++ ||++.|-... ......+. |+++ ....|++| |.|+|.|+-. |++.+.|.
T Consensus 40 iii-pG~~~~~~~~~~~~~~~~~~~-i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (198)
T cd01748 40 LIL-PGVGAFGDAMANLRERGLIEA-LKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRF 107 (198)
T ss_pred EEE-CCCCcHHHHHHHHHHcChHHH-HHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEEC
Confidence 444 7766553110 01234566 5554 57899999 9999999997 88999886
No 71
>PRK07394 hypothetical protein; Provisional
Probab=87.99 E-value=4 Score=43.59 Aligned_cols=46 Identities=35% Similarity=0.498 Sum_probs=39.8
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhcc
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~ 152 (548)
.+|+.||..+|+|+.|||..+++.|+. |.+++.|+|||.-|+-+|+
T Consensus 10 ~~l~~g~~~~~~Lt~eea~~~~~~il~---------g~~~~~q~aAfL~alr~KG 55 (342)
T PRK07394 10 KKVGSGEHTSKDLTREEAADALKLMLL---------GEATPAQIGAFLIAHRIKR 55 (342)
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHhhC
Confidence 367889999999999999888888653 3677889999999999999
No 72
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=87.89 E-value=0.45 Score=46.34 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=30.6
Q ss_pred ceeeCCCCCCCCChhhh---hhhHHHHHHHhhcCCCccc-cccHHHHhHHH
Q 008923 99 KVCTGPTQTRPLREDEA---FKVLDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a---~~~~~~~l~~~~~~l~~~~-~~~~~q~gaff 145 (548)
.|++ ||++.|.+.-+. ...++. |+++ ..|++| |+|+|.|+-.+
T Consensus 41 ~iIl-PG~G~~~~~~~~l~~~~l~~~-i~~~--~~PilGIClG~Qll~~~~ 87 (196)
T PRK13170 41 KLFL-PGVGTAQAAMDQLRERELIDL-IKAC--TQPVLGICLGMQLLGERS 87 (196)
T ss_pred EEEE-CCCCchHHHHHHHHHcChHHH-HHHc--CCCEEEECHHHHHHhhhc
Confidence 4666 999999832221 223455 4444 589999 99999999988
No 73
>PRK09071 hypothetical protein; Validated
Probab=87.67 E-value=0.83 Score=48.42 Aligned_cols=55 Identities=27% Similarity=0.416 Sum_probs=45.4
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHH
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAM 169 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~ 169 (548)
.+|+.|+..+|+|+.|||..+++.|+. |.++..|+|||+-|+-+|+ . |.+|-+.+
T Consensus 9 k~vg~gk~~~~~Lt~eEa~~~~~~il~---------g~~~~~q~aAfL~alr~kg---e-----T~eEi~g~ 63 (323)
T PRK09071 9 RILGKGKRGRRSLTREEARQAMGMILD---------GEVEDDQLGAFLMLLRVKE---E-----TAEELAGF 63 (323)
T ss_pred HHHcCCCCCCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHH
Confidence 468899999999999999999998762 3677789999999999999 5 65665543
No 74
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=87.39 E-value=0.6 Score=48.14 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=37.0
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhc------CCCccc-cccHHHHhHHHHhh-hhccccCCCCCcC
Q 008923 100 VCTGPTQTRPLREDEAFKVLDTILRSAKG------DLKDEE-EVSKAQLGAFFSAM-TIRANAFPEATQW 161 (548)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~------~l~~~~-~~~~~q~gaffga~-~~r~~~~p~~~~~ 161 (548)
|++ ||+.....+....+....|++.+.. .+|+.| |+|.|.|...+|+. .++. .++.++.|
T Consensus 58 ~l~-~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~-~~~~~~~~ 125 (273)
T cd01747 58 ILF-PGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLE-ATEATNSA 125 (273)
T ss_pred EEE-CCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccC-CCccccce
Confidence 444 5544444322333444444444432 289999 99999999999996 4444 66667664
No 75
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.12 E-value=23 Score=38.91 Aligned_cols=208 Identities=12% Similarity=0.020 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHH--HHHHHHHHHHhhCCCCC
Q 008923 215 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR--ELKAYCLAFDDELGPPP 289 (548)
Q Consensus 215 ~~~~L~kL~~G~---~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~e--EIaGfa~Amr~~~~~i~ 289 (548)
++..|..+..+. ....+....+.+.++ .-.+++.-+-.++..++-+....+ -...+.+.+.+.....+
T Consensus 142 lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~-------~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 214 (424)
T PRK05703 142 LKNLLEDQLSGLRQVERIPPEFAELYKRLK-------RSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRV 214 (424)
T ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccc
Confidence 555555554432 223344455667777 677888888888887766654433 34455555555443221
Q ss_pred C---CCCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHH----HhCCCCC--CCCHHH
Q 008923 290 V---ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVLQ 360 (548)
Q Consensus 290 ~---~~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvL----EaLGi~i--~lspe~ 360 (548)
. .....+-++|++|-|++|.-...+ +.+.....|.+|+.---+. -+.|. .+-| +.+|+++ ..++++
T Consensus 215 ~~~~~~~~~i~~vGptGvGKTTt~~kLA-~~~~~~~~g~~V~li~~D~--~r~~a--~eqL~~~a~~~~vp~~~~~~~~~ 289 (424)
T PRK05703 215 EDILKQGGVVALVGPTGVGKTTTLAKLA-ARYALLYGKKKVALITLDT--YRIGA--VEQLKTYAKIMGIPVEVVYDPKE 289 (424)
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHH-HHHHHhcCCCeEEEEECCc--cHHHH--HHHHHHHHHHhCCceEccCCHHh
Confidence 1 113467789999999987544333 2222124467777654333 22233 3333 3477764 556666
Q ss_pred HHHHHHhc-cCceEEecccccchh-hhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEee-cCCCchHHHHHHHHH
Q 008923 361 AKELLEDE-EIGFAYVSLREARPS-LYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGF-YHEGYEEPLLMLMKR 437 (548)
Q Consensus 361 a~~~Lee~-~~GfaFL~Ap~~hPa-mk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGV-fh~~~~e~~Aeal~~ 437 (548)
..+.+++. +.-+.+++.+-+.+. ...+..+++-+.. ..++.+ .+.|+.. +...-...+.+.++.
T Consensus 290 l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~---~~~~~~----------~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 290 LAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEF---SGEPID----------VYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc---cCCCCe----------EEEEEECCCCHHHHHHHHHHhCC
Confidence 66666542 267888888877655 2233334443331 112222 2444433 333344555666777
Q ss_pred cCCCeEEEEEc
Q 008923 438 RGVHSGLVVKG 448 (548)
Q Consensus 438 lG~~~alVV~G 448 (548)
+++.+ +|+-=
T Consensus 357 ~~~~~-vI~TK 366 (424)
T PRK05703 357 LPLDG-LIFTK 366 (424)
T ss_pred CCCCE-EEEec
Confidence 77654 44433
No 76
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=83.85 E-value=1.7 Score=35.34 Aligned_cols=46 Identities=33% Similarity=0.460 Sum_probs=29.6
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHH
Q 008923 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAM 169 (548)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~ 169 (548)
+++|+.||+..+++.|+. |.++..|+|||..|+-+|+ . |.+|-..+
T Consensus 12 g~~Ls~~e~~~~~~~i~~---------g~~s~~qiaAfL~al~~kg---e-----t~~Eiag~ 57 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAILD---------GEVSDAQIAAFLMALRMKG---E-----TPEEIAGF 57 (66)
T ss_dssp T----HHHHHHHHHHHHT---------TSS-HHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---c-----CHHHHHHH
Confidence 489999998888888542 3677889999999999999 4 65665543
No 77
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=83.34 E-value=0.95 Score=44.78 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=61.4
Q ss_pred ceeeCCCCCCCCChhh--hhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH-----HH
Q 008923 99 KVCTGPTQTRPLREDE--AFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA-----MN 170 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~--a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~-----~~ 170 (548)
-|+++=+|.-.. +++ +..+.+.|.+...-.-|++| |+|||.|..++|+++-++++ +.--|.+-+... .+
T Consensus 48 giIlsGgp~sv~-~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~--~E~G~~~v~~~~~~~~l~~ 124 (198)
T COG0518 48 GIIISGGPMSVY-DEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPK--REIGWTPVELTEGDDPLFA 124 (198)
T ss_pred EEEEcCCCCCCc-cccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCC--CccceEEEEEecCcccccc
Confidence 355544443333 444 77788885444444457999 99999999999999999943 222233233321 11
Q ss_pred hhhhHH----------hhhCCCceEEEeCCCC-CccccCCC-C--CCCCCC
Q 008923 171 TFWPLL----------MRALPPDVIFIADPEG-SIMGGGGS-I--GPHYSG 207 (548)
Q Consensus 171 ~~~~~l----------~~~lp~~~~f~a~p~g-~iMg~~~~-~--g~~~~~ 207 (548)
-+.... |..||+.+.++|..+. -+=+.++. . |++|.+
T Consensus 125 gl~~~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~~~~~gvQFHp 175 (198)
T COG0518 125 GLPDLFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRYGKRAYGVQFHP 175 (198)
T ss_pred CCccccCccccchhCccccCCCCCEEEecCCCChhhheecCCcEEEEeeee
Confidence 111111 2469999999973332 23333333 2 777744
No 78
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=80.28 E-value=2.2 Score=48.22 Aligned_cols=50 Identities=6% Similarity=-0.124 Sum_probs=39.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhcc
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (548)
-.|.+.+|++.|. ..++ +++ ++.++ ..+|.+| |+|+|.+...||..+.+-
T Consensus 345 dGIiLpGG~G~~~---~~g~-i~a-i~~a~e~~iP~LGIClG~Qll~i~~grnv~gl 396 (525)
T TIGR00337 345 DGILVPGGFGERG---VEGK-ILA-IKYARENNIPFLGICLGMQLAVIEFARNVLGL 396 (525)
T ss_pred CEEEeCCCCCChh---hcCh-HHH-HHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCC
Confidence 3566777888776 3343 455 67776 7899999 999999999999998873
No 79
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=80.25 E-value=1.3 Score=44.06 Aligned_cols=47 Identities=13% Similarity=-0.098 Sum_probs=35.6
Q ss_pred ccceeeCCCCCCCCChhhhh------hhHHHHHHHhhcCCCccc-cccHHHHhHHHH
Q 008923 97 QAKVCTGPTQTRPLREDEAF------KVLDTILRSAKGDLKDEE-EVSKAQLGAFFS 146 (548)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~a~------~~~~~~l~~~~~~l~~~~-~~~~~q~gaffg 146 (548)
++...|-||++.+- .|. ...+.|.+....+.|.+| |+|+|.|+...+
T Consensus 37 ~~d~iIlPG~g~~~---~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 37 NSKALILPGDGHFD---KAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90 (210)
T ss_pred cCCEEEECCCCchH---HHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence 45556789998774 332 356666777788999999 999999998765
No 80
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=78.09 E-value=0.71 Score=44.75 Aligned_cols=121 Identities=13% Similarity=0.087 Sum_probs=66.9
Q ss_pred hhhccceeeCCCCCCCCCh-hhhhhhHHHHHHH-hhcCCCccc-cccHHHHhHHHH-----------hhhhccccCCCCC
Q 008923 94 LEAQAKVCTGPTQTRPLRE-DEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFS-----------AMTIRANAFPEAT 159 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~-~~a~~~~~~~l~~-~~~~l~~~~-~~~~~q~gaffg-----------a~~~r~~~~p~~~ 159 (548)
-+.++-|..| +++.-... .......+. ||+ .....|++| |.|+|.|+-.+. +.+.|. .|-+.-
T Consensus 35 ~~~d~liipG-G~~~~~~~l~~~~~l~~~-i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~-~~g~~~ 111 (184)
T TIGR03800 35 DEIDGLIIPG-GESTTLSRLLDKYGMFEP-LRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERN-AYGRQV 111 (184)
T ss_pred ccCCEEEECC-CCHHHHHHHHHhccHHHH-HHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEee-ccCCcc
Confidence 3456666666 32221100 011234455 554 456799999 999999998872 455443 443222
Q ss_pred cCCHHHHH--------HHHhhhhH-HhhhCCCceEEEeCCCCCccccCCCC--CCCCCCCCCccCcHHH
Q 008923 160 QWSEGERR--------AMNTFWPL-LMRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRLVG 217 (548)
Q Consensus 160 ~~s~~e~~--------~~~~~~~~-l~~~lp~~~~f~a~p~g~iMg~~~~~--g~~~~~~~~~~~~~~~ 217 (548)
.+.+.+.+ ++..|... .+..+|+.+.++|..++.+-+.+... |++|.|......++.+
T Consensus 112 ~s~~~~l~~~~~~~~~~~~~~~h~~~v~~lp~~~~vla~~~~~~~a~~~~~~~gvQfHPE~~~~~~~~~ 180 (184)
T TIGR03800 112 DSFEAEVDIKGVGDDPITGVFIRAPKIVSVGNGVEILAKVGNRIVAVRQGNILVSSFHPELTDDHRVHE 180 (184)
T ss_pred ccEEEEeecccCCCCcceEEEEcCCCcccCCCCeEEEEEeCCeeEEEEeCCEEEEEeCCccCCCchHHH
Confidence 22211100 11122111 44689999999997777776766553 7788776554444443
No 81
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=76.36 E-value=15 Score=39.54 Aligned_cols=45 Identities=36% Similarity=0.549 Sum_probs=37.4
Q ss_pred CCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHH
Q 008923 108 RPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAM 169 (548)
Q Consensus 108 ~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~ 169 (548)
++|+.|||...++.|+. |.++..|+|||..|+-+|+ . |++|-.-+
T Consensus 15 ~~L~~~eA~~l~~~il~---------g~~~~~qi~A~L~Alr~Kg---e-----t~eEi~G~ 59 (338)
T COG0547 15 RDLDREEARELFKAILS---------GEASPAQIGAFLTALRIKG---E-----TPEEIAGF 59 (338)
T ss_pred CCCCHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHhc---C-----CHHHHHHH
Confidence 89999999999999775 4777889999999999999 5 66665443
No 82
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=74.90 E-value=16 Score=41.40 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=36.8
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHH
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAM 169 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~ 169 (548)
.+|+|+.|||...++.|+. |.+++.|+|||+.|+-+|+ . |.+|-+.+
T Consensus 209 ~~~~Lt~eea~~~~~~il~---------g~~~~~qi~AfL~alr~kg---e-----t~eEl~g~ 255 (531)
T PRK09522 209 QAQTLSQQESHQLFSAVVR---------GELKPEQLAAALVSMKIRG---E-----HPNEIAGA 255 (531)
T ss_pred cCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHH
Confidence 5789999998877777542 3678899999999999999 4 65655543
No 83
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=71.97 E-value=5.6 Score=42.23 Aligned_cols=38 Identities=32% Similarity=0.585 Sum_probs=32.6
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhcc
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~ 152 (548)
.+|+|+.|||...++.|+. |.++..|+|||+-|+-+|+
T Consensus 12 ~g~~Lt~~Ea~~~~~~il~---------g~~~~~q~~AfL~alr~kg 49 (339)
T PRK00188 12 EGEDLSEEEAEELMDAIMS---------GEATPAQIAAFLTALRVKG 49 (339)
T ss_pred CCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC
Confidence 3599999999988888662 3677889999999999999
No 84
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=71.84 E-value=4.9 Score=40.67 Aligned_cols=55 Identities=5% Similarity=-0.118 Sum_probs=40.1
Q ss_pred hhhhccceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhcc
Q 008923 93 LLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 93 ~~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~ 152 (548)
.|+.--.|+++++++.|-. . ..++. ++.+ ...+|.+| |+|+|.+...||+.+.+-
T Consensus 52 ~l~~~dgivl~GG~~~~~~---~-~~~~~-i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~ 108 (235)
T cd01746 52 ALKGADGILVPGGFGIRGV---E-GKILA-IKYARENNIPFLGICLGMQLAVIEFARNVLGL 108 (235)
T ss_pred hhccCCEEEECCCCCCcch---h-hHHHH-HHHHHHCCceEEEEEhHHHHHHHHHHHHhcCC
Confidence 3444456778778887763 3 23555 4444 46899999 999999999999998764
No 85
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=71.16 E-value=1.8 Score=41.54 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCCccc-cccHHHHhHHHHh------------hhhccccCCCCCcCCHHHHH-------HHH-hhhhH-H
Q 008923 119 LDTILRSAKGDLKDEE-EVSKAQLGAFFSA------------MTIRANAFPEATQWSEGERR-------AMN-TFWPL-L 176 (548)
Q Consensus 119 ~~~~l~~~~~~l~~~~-~~~~~q~gaffga------------~~~r~~~~p~~~~~s~~e~~-------~~~-~~~~~-l 176 (548)
.+.|.+......|.+| |.|+|.|+..+++ .+.|. .|.+.-.|.+.... .+. .++.+ .
T Consensus 59 ~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~-~~g~~~g~~~~~l~~~~~~~~~~~~~~~h~~~ 137 (183)
T cd01749 59 LDPLREFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRN-AFGRQVDSFEADLDIPGLGLGPFPAVFIRAPV 137 (183)
T ss_pred HHHHHHHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEee-ccccccceEEEcCCCCcCCCCccEEEEEECcE
Confidence 4453334456899999 9999999999998 55553 55443333322211 011 22221 2
Q ss_pred hhhCCCceEEEeCCCCCccccCCCC--CCCCCCCCCccCcHHHH
Q 008923 177 MRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRLVGA 218 (548)
Q Consensus 177 ~~~lp~~~~f~a~p~g~iMg~~~~~--g~~~~~~~~~~~~~~~~ 218 (548)
+..+|++..++|..|+.+-+.+.+. |.+|.|.-..+.++.++
T Consensus 138 v~~~p~~~~~la~~~~~~~a~~~~~~~g~qfHPE~~~~~~~~~~ 181 (183)
T cd01749 138 IEEVGPGVEVLAEYDGKIVAVRQGNVLATSFHPELTDDTRIHEY 181 (183)
T ss_pred EEEcCCCcEEEEecCCEEEEEEECCEEEEEcCCccCCCcchhhh
Confidence 3578999999985555555655443 77887766665555443
No 86
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=70.95 E-value=22 Score=40.13 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=35.8
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHH
Q 008923 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMN 170 (548)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~ 170 (548)
+++|+.|||...++.|+ + |.++..|+|||+-||-+|+ . |.+|-+.+.
T Consensus 205 g~~Lt~~ea~~~~~~il--------~-g~~~~~q~~AfL~alr~kg---e-----t~~El~g~~ 251 (534)
T PRK14607 205 GEDLSFEEAEDVMEDIT--------D-GNATDAQIAGFLTALRMKG---E-----TADELAGFA 251 (534)
T ss_pred CCCCCHHHHHHHHHHHH--------c-CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHH
Confidence 45999999888777754 2 3677889999999999999 4 666655433
No 87
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=66.03 E-value=1.7e+02 Score=32.63 Aligned_cols=155 Identities=18% Similarity=0.154 Sum_probs=88.0
Q ss_pred cHHHHHHHHhcCCCCCHHHHHH----HHHHhccCccCCCCCCCCHHHHHHHHHHhhhc--CC------CH-HH-HHHHHH
Q 008923 214 RLVGALREVLAGGHLGYEEVQG----VLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--RE------TD-RE-LKAYCL 279 (548)
Q Consensus 214 ~~~~~L~kL~~G~~LS~eEA~~----am~~IL~~~~~~~~G~~sdaQigAFLiaLR~K--GE------T~-eE-IaGfa~ 279 (548)
.+...++++.....||.+...+ +-..++ +-+++...+-.|+-.++-+ |+ ++ +. +....+
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl-------~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALL-------QADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYE 76 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 4677899998778899986655 445566 6789998888888887533 32 22 22 333444
Q ss_pred HHHhhCCCCC----CC-CCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHH----HhC
Q 008923 280 AFDDELGPPP----VA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFM 350 (548)
Q Consensus 280 Amr~~~~~i~----~~-~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvL----EaL 350 (548)
.+.+...... .+ ....+-+||.+|.|++|.-...+ ..+...|.+|+.=..+...+ +. .|-| +.+
T Consensus 77 ~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA---~~L~~~g~kV~lV~~D~~R~--aa--~eQL~~la~~~ 149 (437)
T PRK00771 77 ELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLA---RYFKKKGLKVGLVAADTYRP--AA--YDQLKQLAEKI 149 (437)
T ss_pred HHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHH---HHHHHcCCeEEEecCCCCCH--HH--HHHHHHHHHHc
Confidence 4444333211 11 12356789999999987443322 23445688888755544322 22 4433 446
Q ss_pred CCCCCC-----CHHH-HHHHHHhc-cCceEEecccccch
Q 008923 351 GASTNL-----SVLQ-AKELLEDE-EIGFAYVSLREARP 382 (548)
Q Consensus 351 Gi~i~l-----spe~-a~~~Lee~-~~GfaFL~Ap~~hP 382 (548)
|+++.. ++.. +.+.++.. +.-+.+++-+-.++
T Consensus 150 gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 150 GVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred CCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCccc
Confidence 776422 2222 23333321 14677777665444
No 88
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=62.82 E-value=4.4 Score=39.92 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=28.3
Q ss_pred hHHHHHHHhh-cCCCccc-cccHHHHhHH------------HHhhhhcc
Q 008923 118 VLDTILRSAK-GDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (548)
Q Consensus 118 ~~~~~l~~~~-~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (548)
..+.|++.+. ...|.+| |+|+|.|+-. +++.+.|.
T Consensus 65 ~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~ 113 (209)
T PRK13146 65 LGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF 113 (209)
T ss_pred cHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence 3556677663 6899999 9999999998 78888875
No 89
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=62.06 E-value=98 Score=31.95 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCC-
Q 008923 215 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPV- 290 (548)
Q Consensus 215 ~~~~L~kL~~G~---~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~- 290 (548)
++..|+++..+. .+ .++...+.+.+. ...+++.-+-.++--++......+-...+.+.+.+.....+.
T Consensus 116 lk~~l~~~~~~~~~~~~-~~~l~~l~~~L~-------~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 187 (282)
T TIGR03499 116 LRELLERLLAGLAWLQR-DPEGAKLLERLL-------RAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEE 187 (282)
T ss_pred HHHHHHHHHHhhhhccc-CHHHHHHHHHHH-------HCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCcc
Confidence 556666655531 22 245566667777 667888888888877764332222234455666655532111
Q ss_pred ----CCCCCeeEEcCCCCCCCccccchHHHHHHHhhcC-CeEEeecCCCCCCCCCCcHHHHH----HhCCCCC--CCCHH
Q 008923 291 ----ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVL 359 (548)
Q Consensus 291 ----~~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaG-v~VaKHGnRsvsSksGSt~ADvL----EaLGi~i--~lspe 359 (548)
.....+-++|..|-|++|+-.-.+ +...-..| .+|..--.+.. +.|. .+-| +.+|+++ ..++.
T Consensus 188 ~~~~~~~~vi~~vGptGvGKTTt~~kLa--~~~~~~~g~~~V~li~~D~~--r~~a--~eql~~~~~~~~~p~~~~~~~~ 261 (282)
T TIGR03499 188 DEILEQGGVIALVGPTGVGKTTTLAKLA--ARFVLEHGNKKVALITTDTY--RIGA--VEQLKTYAKILGVPVKVARDPK 261 (282)
T ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHH--HHHHHHcCCCeEEEEECCcc--chhH--HHHHHHHHHHhCCceeccCCHH
Confidence 122367799999999986433222 11211214 77776655532 2233 3433 3367764 45666
Q ss_pred HHHHHHHh
Q 008923 360 QAKELLED 367 (548)
Q Consensus 360 ~a~~~Lee 367 (548)
+..+.+++
T Consensus 262 ~l~~~l~~ 269 (282)
T TIGR03499 262 ELRKALDR 269 (282)
T ss_pred HHHHHHHH
Confidence 66666665
No 90
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=58.76 E-value=7.3 Score=37.79 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=53.5
Q ss_pred HHHHHHh-hcCCCccc-cccHHHHhHHHHhh----------hhccccCCCCCcCCHHHH------HHHH-hhhhH-Hhhh
Q 008923 120 DTILRSA-KGDLKDEE-EVSKAQLGAFFSAM----------TIRANAFPEATQWSEGER------RAMN-TFWPL-LMRA 179 (548)
Q Consensus 120 ~~~l~~~-~~~l~~~~-~~~~~q~gaffga~----------~~r~~~~p~~~~~s~~e~------~~~~-~~~~~-l~~~ 179 (548)
+. +|++ ....|+++ |.|+|-++-.+|+. .++.|.+.+...+.+.+- ..+. .+|-. .+..
T Consensus 63 ~~-i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~H~d~v~~ 141 (189)
T PRK13525 63 EP-LREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGEPFPAVFIRAPYIEE 141 (189)
T ss_pred HH-HHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccCCCCCeEEEEEeCceeec
Confidence 44 5554 44689999 99999999999883 334445544333321110 0011 11222 3367
Q ss_pred CCCceEEEeCCCCCccccCCCC--CCCCCCCCCccCcH
Q 008923 180 LPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRL 215 (548)
Q Consensus 180 lp~~~~f~a~p~g~iMg~~~~~--g~~~~~~~~~~~~~ 215 (548)
||+.+.++|..++.+-+.+.+. |.+|.|.-..+.++
T Consensus 142 lp~~~~vlA~~~~~~~~~~~~~~~g~QfHPE~~~~~~~ 179 (189)
T PRK13525 142 VGPGVEVLATVGGRIVAVRQGNILATSFHPELTDDTRV 179 (189)
T ss_pred cCCCcEEEEEcCCEEEEEEeCCEEEEEeCCccCCCchH
Confidence 9999999983334433444333 77776655444433
No 91
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=58.60 E-value=16 Score=38.78 Aligned_cols=38 Identities=32% Similarity=0.505 Sum_probs=32.4
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhcc
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~ 152 (548)
.+|+|+.|||.-+++.|+. +.++..|+|||.-|+-+|+
T Consensus 6 ~~~~Lt~eEa~~~~~~il~---------g~~~~~q~~AfL~alr~kg 43 (330)
T TIGR01245 6 DGKDLSRDEAEQLMKEIMS---------GEASPAQIAAILAALRIKG 43 (330)
T ss_pred cCCCcCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC
Confidence 5789999999888888662 3566689999999999999
No 92
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=57.23 E-value=5.9 Score=38.59 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=24.9
Q ss_pred hHHHHHHHh-hcCCCccc-cccHHHHhHH------------HHhhhhcc
Q 008923 118 VLDTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (548)
Q Consensus 118 ~~~~~l~~~-~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (548)
..+. |+++ ....|.++ |.|+|.++.. +++.+.+.
T Consensus 60 ~~~~-i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (200)
T PRK13143 60 LRDV-ILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF 107 (200)
T ss_pred HHHH-HHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence 3444 6665 45689999 9999999963 67777664
No 93
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=57.01 E-value=1.3e+02 Score=31.90 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcC--C---CHHHHHH-HHHHHHhhCCC-
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--E---TDRELKA-YCLAFDDELGP- 287 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KG--E---T~eEIaG-fa~Amr~~~~~- 287 (548)
+.+-++++..++.++.+-..++.+.++ ..++++.-.-.++-.++-+. + +.+++.. +.+.|.+...+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~l~~~L~-------~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 103 (318)
T PRK10416 31 FGEGINGLFAKKKIDEDLLEELEELLI-------EADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEPV 103 (318)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCcC
Confidence 455667777777888888888888888 77888888888888876552 1 4455443 33355554431
Q ss_pred ---CCCC--CCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCC
Q 008923 288 ---PPVA--DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 334 (548)
Q Consensus 288 ---i~~~--~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRs 334 (548)
+... ...++-++|.+|.|++|.-...+ ..++..|.+|+.-+.+-
T Consensus 104 ~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA---~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 104 EKPLNIEEKKPFVILVVGVNGVGKTTTIGKLA---HKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CccccccCCCCeEEEEECCCCCcHHHHHHHHH---HHHHhcCCeEEEEecCc
Confidence 2111 13467789999999876433222 22345688888877654
No 94
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=54.52 E-value=12 Score=45.31 Aligned_cols=104 Identities=14% Similarity=0.055 Sum_probs=64.1
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhcC-CCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh-hhHH
Q 008923 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGD-LKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF-WPLL 176 (548)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~-l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~-~~~l 176 (548)
|-++-||+.|. -.-..++. +|+..++ .|+-| |+|||-++-+.||+|.+- +|=-+|+-=+ .+..- |.-+
T Consensus 214 lflSNGPGdPe---~~~~~v~~-vr~lL~~~~PvfGIClGHQllA~AaGakT~Km-KyGNRGhNiP----~~~~~tGrc~ 284 (1435)
T KOG0370|consen 214 LFLSNGPGDPE---LCPLLVQN-VRELLESNVPVFGICLGHQLLALAAGAKTYKM-KYGNRGHNIP----CTCRATGRCF 284 (1435)
T ss_pred EEEeCCCCCch---hhHHHHHH-HHHHHhCCCCeEEEehhhHHHHHhhCCceEEe-eccccCCCcc----ceeccCceEE
Confidence 56778888888 44455666 5555444 99999 999999999999999987 7755544211 00000 1110
Q ss_pred h-----------hhCCCceE--EEeCCCCCccccCCCCCCCCCCCCCcc
Q 008923 177 M-----------RALPPDVI--FIADPEGSIMGGGGSIGPHYSGNDPRE 212 (548)
Q Consensus 177 ~-----------~~lp~~~~--f~a~p~g~iMg~~~~~g~~~~~~~~~~ 212 (548)
. ++||.... |+=--||+==|+-|..-|.|..+.+|+
T Consensus 285 ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPE 333 (1435)
T KOG0370|consen 285 ITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPE 333 (1435)
T ss_pred EEecCCceeeccccccCCCchheeecccCCCceEecCCCCceeeecCCc
Confidence 0 47777655 443455555566676655444444443
No 95
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=52.71 E-value=18 Score=36.86 Aligned_cols=168 Identities=13% Similarity=0.008 Sum_probs=87.4
Q ss_pred cccccccCCCCCCchhhhhhccceeeCCCCCCCCChhhhhhhHHHHHHHh-------hcCCCccc-cccHHHHhHHHHhh
Q 008923 77 ISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-------KGDLKDEE-EVSKAQLGAFFSAM 148 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~-------~~~l~~~~-~~~~~q~gaffga~ 148 (548)
+-.+||-.+-.-|...=|+.--.++|+=-. -+||-=-|-|++-| --+.|++| |.|||-+..+-|+.
T Consensus 40 ~wd~frV~~gefP~~~Dl~ky~gfvIsGS~------~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~ 113 (245)
T KOG3179|consen 40 QWDLFRVIDGEFPQEEDLEKYDGFVISGSK------HDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGK 113 (245)
T ss_pred eeEEEEEecCCCCChhhhhhhceEEEeCCc------ccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCc
Confidence 456677776677777767665555554211 13443333333322 23579999 99999999999999
Q ss_pred hhccccCCCCCcCCHHHHHH--HHhhhhHHhhhCCCceEEEeCCCCCccccCCCC---------CC-------CC-CCCC
Q 008923 149 TIRANAFPEATQWSEGERRA--MNTFWPLLMRALPPDVIFIADPEGSIMGGGGSI---------GP-------HY-SGND 209 (548)
Q Consensus 149 ~~r~~~~p~~~~~s~~e~~~--~~~~~~~l~~~lp~~~~f~a~p~g~iMg~~~~~---------g~-------~~-~~~~ 209 (548)
+.|+.+=|.-+--| -+- .+.-+..+|...|..+-++-|+.-.+..+.... -+ ++ -=++
T Consensus 114 Vgra~KG~~~~lg~---itivk~~~~~~~yFG~~~~~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~~~l~fQG 190 (245)
T KOG3179|consen 114 VGRAPKGPDLGLGS---ITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIEDHLLCFQG 190 (245)
T ss_pred cccCCCCCcccccc---eEEEEecccchhhcccchhhhhHHhhcccceecCCchhhhhccccccceEEEEecceEEEecC
Confidence 99994333111111 000 011133344445544444422222222222111 00 00 0133
Q ss_pred CccCc---HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHH
Q 008923 210 PREMR---LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL 261 (548)
Q Consensus 210 ~~~~~---~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFL 261 (548)
.|+.+ +.+++.++...+...++.++.+-..+ ....++.|.+--+
T Consensus 191 HPEyn~eil~~ivdrv~~~k~~~eef~~~ak~~~--------En~~~d~~~~~~i 237 (245)
T KOG3179|consen 191 HPEYNKEILFEIVDRVLGTKLVEEEFAEKAKKTM--------ENPEPDRQLAVSI 237 (245)
T ss_pred CchhhHHHHHHHHHHHhcchhhHHHHHHHHHHhh--------hCCCccHHHHHHH
Confidence 45542 56677777776766666666666655 3555666665433
No 96
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=51.16 E-value=56 Score=34.67 Aligned_cols=98 Identities=18% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC----Ccccc--c-h---HHHHH
Q 008923 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRFFR--S-T---LFVAA 318 (548)
Q Consensus 256 QigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~----~tfNi--S-T---~laAi 318 (548)
|..++++|....|++ .+++....++|++.-..+...+ ..+-+-|.|..+. ..+++ | + .++++
T Consensus 14 ~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~-~~~~v~g~~~~~~~~~~~~~~~g~s~~~~~~l~a~ 92 (408)
T cd01554 14 SHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD-GVITIQGVGMAGLKAPQNALNLGNSGTAIRLISGV 92 (408)
T ss_pred HHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC-CEEEEEecCCCCCCCCCceEEccCccHHHHHHHHH
Confidence 446777777777755 5688888999998776654322 2333444443221 12232 1 2 21222
Q ss_pred HHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 319 VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 319 VaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
++..+.+|...|....+.+.-..+.|+|++||+.+.
T Consensus 93 -~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~ 128 (408)
T cd01554 93 -LAGADFEVELFGDDSLSKRPMDRVTLPLKKMGASIS 128 (408)
T ss_pred -HHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEE
Confidence 333345788899988877655566999999999874
No 97
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.00 E-value=3.3e+02 Score=30.61 Aligned_cols=157 Identities=15% Similarity=0.019 Sum_probs=81.7
Q ss_pred CeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHH----HhCCCCCCC--CHHHHHHHHHhc
Q 008923 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGASTNL--SVLQAKELLEDE 368 (548)
Q Consensus 295 ~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvL----EaLGi~i~l--spe~a~~~Lee~ 368 (548)
.+-++|++|.|++|.-.-.+ + ......|.+|..-..+..- .++ .+.| +.+|+++.. ++..+.+.+++.
T Consensus 225 vi~lvGptGvGKTTtaaKLA-~-~~~~~~G~~V~Lit~Dt~R--~aA--~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~ 298 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLA-A-KYFLHMGKSVSLYTTDNYR--IAA--IEQLKRYADTMGMPFYPVKDIKKFKETLARD 298 (432)
T ss_pred EEEEECCCCCCHHHHHHHHH-H-HHHHhcCCeEEEecccchh--hhH--HHHHHHHHHhcCCCeeehHHHHHHHHHHHhC
Confidence 46689999999986433322 1 1123457788776655422 233 3333 457887532 245556666543
Q ss_pred cCceEEecccccch-hhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEe-ecCCCchHHHHHHHHHcCCCeEEEE
Q 008923 369 EIGFAYVSLREARP-SLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAG-FYHEGYEEPLLMLMKRRGVHSGLVV 446 (548)
Q Consensus 369 ~~GfaFL~Ap~~hP-amk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViG-Vfh~~~~e~~Aeal~~lG~~~alVV 446 (548)
+.-+.+++.+-+.| ....+-.+.+.+..-.+-. |.. .+.|+. .+...-...+++.++.+|+++.++=
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~-~~e----------~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlT 367 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKD-SVE----------NLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCC-CCe----------EEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 46677888766643 3334444444333211111 111 234443 3444355666677777888654444
Q ss_pred EcCCC-----c-cc--ccCCeeEEEecCCce
Q 008923 447 KGEEG-----A-LS--MTTRLRSVNASKGLP 469 (548)
Q Consensus 447 ~G~eG-----~-iS--~~g~T~v~el~~G~~ 469 (548)
| .|+ . ++ ......+..+.+|+.
T Consensus 368 K-LDEt~~~G~il~i~~~~~lPI~ylt~GQ~ 397 (432)
T PRK12724 368 K-LDEADFLGSFLELADTYSKSFTYLSVGQE 397 (432)
T ss_pred c-ccCCCCccHHHHHHHHHCCCEEEEecCCC
Confidence 4 333 2 33 334455566666643
No 98
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=50.27 E-value=47 Score=35.48 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCC-------ccccchHH
Q 008923 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT-------RFFRSTLF 315 (548)
Q Consensus 250 G~~sdaQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~~-------tfNiST~l 315 (548)
|.-| .+.++++.+...+|.| .+++....+++++.-..+... ...+-+-|++..+.. +..-|+.+
T Consensus 20 gsKS-s~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~-~~~~~I~g~~~~~~~~~~~~~~~~~as~~~ 97 (417)
T PRK12830 20 GAKN-SAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRD-GDTLEIDPTGIQSMPLPNGKVKSLRASYYF 97 (417)
T ss_pred CcHH-HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEc-CCEEEEECCCCCCCCCCHHHHhhchhHHHH
Confidence 4444 3556666666667755 677888899998877665432 223445454322221 12233334
Q ss_pred HHHHHhhc-CCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 316 VAAVRSCY-GESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 316 aAiVaAaa-Gv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
++.+++.. +++|...|....+.+.=...-+.|++||+.+.
T Consensus 98 ~~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 138 (417)
T PRK12830 98 MGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVT 138 (417)
T ss_pred HHHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEE
Confidence 55455543 34898899888877766666788999999874
No 99
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.60 E-value=4.4e+02 Score=29.69 Aligned_cols=200 Identities=10% Similarity=0.065 Sum_probs=102.6
Q ss_pred CCCCCHHHHHHHHHHhhhc--C---CCHHHHHH-HHHHHHhhCCCCC-C-CCCCCeeEEcCCCCCCCccccchHHHHHHH
Q 008923 249 APGVSESLLSAFLIGQRMN--R---ETDRELKA-YCLAFDDELGPPP-V-ADVKSLTHYGEPYDGNTRFFRSTLFVAAVR 320 (548)
Q Consensus 249 ~G~~sdaQigAFLiaLR~K--G---ET~eEIaG-fa~Amr~~~~~i~-~-~~~~~vDi~GTGGDG~~tfNiST~laAiVa 320 (548)
+.++++.-+-.++-.++.+ . .+.+++.. +.+.+........ . .....+-++|.+|-|++|+-.-.+ . .+
T Consensus 189 ~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA-~--~L 265 (436)
T PRK11889 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMA-W--QF 265 (436)
T ss_pred HCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHH-H--HH
Confidence 5556666666665555321 1 13334333 2333333332111 1 112467799999999986533322 1 23
Q ss_pred hhcCCeEEeecCCCCCCCCCCcHHHHH---HhCCCCC--CCCHHHHHHHHHhc----cCceEEecccccch-hhhhHHHh
Q 008923 321 SCYGESCLLHGAEWMPPKGGVTEEQML---KFMGAST--NLSVLQAKELLEDE----EIGFAYVSLREARP-SLYSLIGL 390 (548)
Q Consensus 321 AaaGv~VaKHGnRsvsSksGSt~ADvL---EaLGi~i--~lspe~a~~~Lee~----~~GfaFL~Ap~~hP-amk~l~~i 390 (548)
...|.+|..--.+. -+.|+ ..++- +.+|+++ ..++..+.+.++.. +.-+.|++.+--.+ ....+..+
T Consensus 266 ~~~GkkVglI~aDt--~RiaA-vEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL 342 (436)
T PRK11889 266 HGKKKTVGFITTDH--SRIGT-VQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEM 342 (436)
T ss_pred HHcCCcEEEEecCC--cchHH-HHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHH
Confidence 45677787654432 22233 13322 3478885 46888888888542 24678888775444 33445556
Q ss_pred hcccCCCCccccchhhhhhhcccCCCeEEEeec-CCCchHHHHHHHHHcCCCeEEEEEcCCC-----c---ccccCCeeE
Q 008923 391 REHIKKRPPVATSEKVQQFVRAQGREAIVAGFY-HEGYEEPLLMLMKRRGVHSGLVVKGEEG-----A---LSMTTRLRS 461 (548)
Q Consensus 391 Rk~LGvRTPL~npak~l~~LNPa~a~~qViGVf-h~~~~e~~Aeal~~lG~~~alVV~G~eG-----~---iS~~g~T~v 461 (548)
++.++...|- . .+.|+... ...=....++.++.+++++ +|+-=.|+ . +.......+
T Consensus 343 ~~~lk~~~Pd----e----------vlLVLsATtk~~d~~~i~~~F~~~~idg-lI~TKLDET~k~G~iLni~~~~~lPI 407 (436)
T PRK11889 343 IETMGQVEPD----Y----------ICLTLSASMKSKDMIEIITNFKDIHIDG-IVFTKFDETASSGELLKIPAVSSAPI 407 (436)
T ss_pred HHHHhhcCCC----e----------EEEEECCccChHHHHHHHHHhcCCCCCE-EEEEcccCCCCccHHHHHHHHHCcCE
Confidence 6655533221 1 24555432 2223345666777788764 44433333 2 333334555
Q ss_pred EEecCCce
Q 008923 462 VNASKGLP 469 (548)
Q Consensus 462 ~el~~G~~ 469 (548)
..+.+|+.
T Consensus 408 syit~GQ~ 415 (436)
T PRK11889 408 VLMTDGQD 415 (436)
T ss_pred EEEeCCCC
Confidence 66666643
No 100
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.81 E-value=2.5e+02 Score=33.69 Aligned_cols=215 Identities=14% Similarity=0.079 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHH-HHHHhhCCCCC-----CCCCCCeeEEcC
Q 008923 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYC-LAFDDELGPPP-----VADVKSLTHYGE 301 (548)
Q Consensus 228 LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa-~Amr~~~~~i~-----~~~~~~vDi~GT 301 (548)
.......++.+.++ +.++++.-+-.|+--++- +.+.+++..++ +.+.+...... +....++-.||+
T Consensus 122 ~~~~~~~~l~~~Ll-------~~dv~~~la~~l~~~l~~-~~~~~~~~~~l~~~L~~~l~il~~~~~~~~~g~Vi~lVGp 193 (767)
T PRK14723 122 GRDPLRASLFRWLL-------GAGFSGQLARALLERLPV-GYDRPAAMAWIRNELATHLPVLRDEDALLAQGGVLALVGP 193 (767)
T ss_pred cChHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhhccCCCcccCCCeEEEEECC
Confidence 33333355667777 677888777777776653 34555544433 33333221111 111246778999
Q ss_pred CCCCCCccccchHHHHHHHhhcC-CeEEeecCCCCCCCCCCcHHHHHH----hCCCCC--CCCHHHHHHHHHhc-cCceE
Q 008923 302 PYDGNTRFFRSTLFVAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQMLK----FMGAST--NLSVLQAKELLEDE-EIGFA 373 (548)
Q Consensus 302 GGDG~~tfNiST~laAiVaAaaG-v~VaKHGnRsvsSksGSt~ADvLE----aLGi~i--~lspe~a~~~Lee~-~~Gfa 373 (548)
.|.||+|.-.-. ++......| .+|..-..+ +.+-|. .+-|+ .+|+++ ..+++++.+.+++. ...++
T Consensus 194 nGvGKTTTiaKL--A~~~~~~~G~kkV~lit~D--t~RigA--~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~V 267 (767)
T PRK14723 194 TGVGKTTTTAKL--AARCVAREGADQLALLTTD--SFRIGA--LEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLV 267 (767)
T ss_pred CCCcHHHHHHHH--HhhHHHHcCCCeEEEecCc--ccchHH--HHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEE
Confidence 999997532221 222222334 466654433 234444 55554 488775 35788888877763 24688
Q ss_pred EecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeec-CCCchHHHHHHHHHc---CCCeEEEEEcC
Q 008923 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFY-HEGYEEPLLMLMKRR---GVHSGLVVKGE 449 (548)
Q Consensus 374 FL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVf-h~~~~e~~Aeal~~l---G~~~alVV~G~ 449 (548)
+++.+-.+|.-..++..-+.+.- ..+|.. .+.|+... ..+-...+++.++.. ++. .+|+-=.
T Consensus 268 LIDTAGRs~~d~~l~eel~~l~~---~~~p~e----------~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~-glIlTKL 333 (767)
T PRK14723 268 LIDTVGMSQRDRNVSEQIAMLCG---VGRPVR----------RLLLLNAASHGDTLNEVVHAYRHGAGEDVD-GCIITKL 333 (767)
T ss_pred EEeCCCCCccCHHHHHHHHHHhc---cCCCCe----------EEEEECCCCcHHHHHHHHHHHhhcccCCCC-EEEEecc
Confidence 99988866654444443333321 122322 34455332 222233344555443 454 4555444
Q ss_pred CC-----c---ccccCCeeEEEecCCcee
Q 008923 450 EG-----A---LSMTTRLRSVNASKGLPV 470 (548)
Q Consensus 450 eG-----~---iS~~g~T~v~el~~G~~i 470 (548)
|+ . +.......|..+.+|+.+
T Consensus 334 DEt~~~G~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 334 DEATHLGPALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred CCCCCccHHHHHHHHHCCCeEEEecCCCC
Confidence 43 2 334445666777777555
No 101
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=46.94 E-value=51 Score=35.30 Aligned_cols=171 Identities=9% Similarity=0.065 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC-------CccccchHH
Q 008923 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN-------TRFFRSTLF 315 (548)
Q Consensus 250 G~~sdaQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~-------~tfNiST~l 315 (548)
|.-|..+ .+++++.-.+|.| .+++....+++++.-..+.......+.+-|++..+. .+..-++.+
T Consensus 20 gsKS~~~-r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~~~~~i~g~~~~~~~~~~~~~~~s~~s~~~ 98 (417)
T PRK09369 20 GAKNAAL-PILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGNGTVTIDASNINNTEAPYELVKKMRASILV 98 (417)
T ss_pred CcHHHHH-HHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCCCEEEEECCCCCCCcCCHHHHhhhhhHHHH
Confidence 3334433 4555555556654 778999999999876555432212334434332111 011112222
Q ss_pred HHHHHhhc-CCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEecccccchhhhhHHHhhccc
Q 008923 316 VAAVRSCY-GESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHI 394 (548)
Q Consensus 316 aAiVaAaa-Gv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL~Ap~~hPamk~l~~iRk~L 394 (548)
++.+++.. +.++...|+..+.++--..+.|.|++||++++.. .|...+-. +.. +.+..-.+
T Consensus 99 l~~~~~~~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~------------~~~~~v~~---~g~---l~~~~~~l 160 (417)
T PRK09369 99 LGPLLARFGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIE------------HGYVEAKA---DGR---LKGAHIVL 160 (417)
T ss_pred HHHHhccCCceEEEecCCCccCCCchHHHHHHHHHCCCEEEEE------------CCEEEEEe---cCC---cccceEeC
Confidence 33334443 4589999988888876667789999999987421 12111110 111 11111112
Q ss_pred CCCCccccchhhhhhhcc-cCCCeEEEeecCCCchHHHHHHHHHcCCC
Q 008923 395 KKRPPVATSEKVQQFVRA-QGREAIVAGFYHEGYEEPLLMLMKRRGVH 441 (548)
Q Consensus 395 GvRTPL~npak~l~~LNP-a~a~~qViGVfh~~~~e~~Aeal~~lG~~ 441 (548)
...+.- ....++ +.-+ +.-...+.++.+..+.+.+.++|+.+|++
T Consensus 161 ~~~ss~-~~~~ll-~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~G~~ 206 (417)
T PRK09369 161 DFPSVG-ATENIL-MAAVLAEGTTVIENAAREPEIVDLANFLNKMGAK 206 (417)
T ss_pred CCCCHH-HHHHHH-HHHHhCCCcEEEeCCCcCCcHHHHHHHHHHCCCE
Confidence 211200 000110 0111 12245566888899999999999999963
No 102
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=44.42 E-value=16 Score=36.07 Aligned_cols=44 Identities=18% Similarity=0.049 Sum_probs=31.9
Q ss_pred cceeeCCCCCCCCChhhhhhh-----HHHHHHHhhcCCCccc-cccHHHHhHHH
Q 008923 98 AKVCTGPTQTRPLREDEAFKV-----LDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~-----~~~~l~~~~~~l~~~~-~~~~~q~gaff 145 (548)
+-..|-||++.|- .+... ++.+|++ ....|.+| |+|.|.|+---
T Consensus 38 ~D~lIlPG~g~~~---~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 38 AETIILPGVGHFK---DAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred CCEEEECCCCCHH---HHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhhhc
Confidence 4445889998876 44432 2334777 56899999 99999998776
No 103
>PLN02641 anthranilate phosphoribosyltransferase
Probab=42.46 E-value=37 Score=36.51 Aligned_cols=108 Identities=23% Similarity=0.306 Sum_probs=62.3
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhh---CCCc
Q 008923 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRA---LPPD 183 (548)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~---lp~~ 183 (548)
+++|+.|||..+++.|+. + +++.|+|||+-|+-+|+ . |.+|-+. |...+.+. +|..
T Consensus 14 g~~Lt~eEa~~~~~~il~---------~-~~~~qigAfL~alr~kg---e-----t~eEiag---~~~a~~~~~~~~~~~ 72 (343)
T PLN02641 14 GTDLTEEEAEAALDFLLD---------D-ADEAQISAFLVLLRAKG---E-----TFEEIAG---LARAMIKRARKVDGL 72 (343)
T ss_pred CCCCCHHHHHHHHHHHHc---------C-CCHHHHHHHHHHHHHhC---C-----CHHHHHH---HHHHHHHhCCCCCCC
Confidence 349999999998888764 2 35679999999999999 4 5555443 44444332 3210
Q ss_pred eEEEeCCCCCccccCCC---C--------------CCCC--CCCCCcc--CcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 008923 184 VIFIADPEGSIMGGGGS---I--------------GPHY--SGNDPRE--MRLVGALREVLAGGHLGYEEVQGVLRDV 240 (548)
Q Consensus 184 ~~f~a~p~g~iMg~~~~---~--------------g~~~--~~~~~~~--~~~~~~L~kL~~G~~LS~eEA~~am~~I 240 (548)
.+.=|+.|.+++ + |..- .+++-.. .--.++|+.+.-.-+++.+++.+.++..
T Consensus 73 -----~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~l~~~ 145 (343)
T PLN02641 73 -----VDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRCVEEV 145 (343)
T ss_pred -----CCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHHHHhc
Confidence 111122333221 1 1100 1221111 2356777777665688888888888764
No 104
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=41.39 E-value=58 Score=34.47 Aligned_cols=100 Identities=9% Similarity=0.005 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCC-----CCC-ccccchH-HHHHHHh
Q 008923 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----GNT-RFFRSTL-FVAAVRS 321 (548)
Q Consensus 256 QigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGD-----G~~-tfNiST~-laAiVaA 321 (548)
...+++++...+|+| .+++....++|++.-..+.......+.+-|.+.. +.. ....++. +++.+++
T Consensus 14 ~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~~~~~I~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~ 93 (400)
T cd01555 14 ALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENTLVIDASNINSTEAPYELVRKMRASILVLGPLLA 93 (400)
T ss_pred HHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECCCCEEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhc
Confidence 346666666667765 5679999999998766554322133445343221 000 0001221 1222333
Q ss_pred h-cCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 322 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 322 a-aGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
. .++.|..+|+..+.++.-..+.++|++||+++.
T Consensus 94 ~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~ 128 (400)
T cd01555 94 RFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIE 128 (400)
T ss_pred CCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEE
Confidence 2 447888889766655444456899999999874
No 105
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.39 E-value=3.3e+02 Score=30.41 Aligned_cols=136 Identities=7% Similarity=0.066 Sum_probs=81.0
Q ss_pred HHHHHhccCccCCCCCCCCHHHHHHHHHHhhhc--C---CCHHHHHHHHHHHHhhCCCCC----CCCCCCeeEEcCCCCC
Q 008923 235 GVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--R---ETDRELKAYCLAFDDELGPPP----VADVKSLTHYGEPYDG 305 (548)
Q Consensus 235 ~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~K--G---ET~eEIaGfa~Amr~~~~~i~----~~~~~~vDi~GTGGDG 305 (548)
++.+.+. ..++++.-+-.++-.++-. . .+.+++...+........+++ ......+-++|..|-|
T Consensus 146 ~~~~~L~-------~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvG 218 (407)
T PRK12726 146 DFVKFLK-------GRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVG 218 (407)
T ss_pred HHHHHHH-------HcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCC
Confidence 5566666 6678888887777766544 1 345555554443333333221 1123467799999999
Q ss_pred CCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHH----hCCCCC--CCCHHHHHHHHHhc----cCceEEe
Q 008923 306 NTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLK----FMGAST--NLSVLQAKELLEDE----EIGFAYV 375 (548)
Q Consensus 306 ~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLE----aLGi~i--~lspe~a~~~Lee~----~~GfaFL 375 (548)
++|.-.--+ ..+...|.+|..--.+.. +.|. .+-|. .+|+++ ..+|++..+.++.. +.-+.++
T Consensus 219 KTTt~akLA---~~l~~~g~~V~lItaDty--R~gA--veQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLI 291 (407)
T PRK12726 219 KTTTLVKLG---WQLLKQNRTVGFITTDTF--RSGA--VEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILI 291 (407)
T ss_pred HHHHHHHHH---HHHHHcCCeEEEEeCCcc--CccH--HHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 976432222 122345888887665533 3444 44444 378774 56888888877652 2567888
Q ss_pred cccccchhh
Q 008923 376 SLREARPSL 384 (548)
Q Consensus 376 ~Ap~~hPam 384 (548)
+.+-.+|-.
T Consensus 292 DTAGr~~~d 300 (407)
T PRK12726 292 DTVGRNYLA 300 (407)
T ss_pred ECCCCCccC
Confidence 888776643
No 106
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=40.37 E-value=53 Score=34.96 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=56.6
Q ss_pred HHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCC-------CCccccchHHHHHHHhh
Q 008923 257 LSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDG-------NTRFFRSTLFVAAVRSC 322 (548)
Q Consensus 257 igAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG-------~~tfNiST~laAiVaAa 322 (548)
..+++++.-..|.+ .+++....+++++.-..+.... ..+-+-|.+... ..+++-++.+++.+++.
T Consensus 26 ~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~~s~~~ra~~~~~~~~la~ 104 (416)
T TIGR01072 26 LPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN-NTLEINTPNINSTEAPYELVRKMRASILVLGPLLAR 104 (416)
T ss_pred HHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC-CEEEEECCCCCCCCCCHHHHhhhhHHHHHHHHHhcc
Confidence 44555554445533 5678888999988766554332 334454443210 01122122212223332
Q ss_pred -cCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 323 -YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 323 -aGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
.++++..+|+..+.++....+.|+|+++|+++.
T Consensus 105 ~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~ 138 (416)
T TIGR01072 105 FGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIV 138 (416)
T ss_pred CCceEEEecCCCccCCCCHHHHHHHHHHCCCEEE
Confidence 356899999887777666667899999999874
No 107
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=39.16 E-value=57 Score=29.29 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=46.1
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~ 285 (548)
.+...++.- +. +.||.+|..++...++. ......++..|+.+.+...-.-.|++||.-....+....
T Consensus 23 ~Dy~PLlAL-L~-r~Ltd~ev~~Va~~L~~----~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa~G 89 (96)
T PF11829_consen 23 TDYVPLLAL-LR-RRLTDDEVAEVAAELAA----RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLAAAG 89 (96)
T ss_dssp HHHHHHHHH-HT-TTS-HHHHHHHHHHHHH----HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHTTT
T ss_pred CccHHHHHH-hc-ccCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhCC
Confidence 334444443 33 34999999999999982 112233899999999999988899999998877776544
No 108
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=36.59 E-value=90 Score=30.88 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCC
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~ 286 (548)
..+++..|...+.+..++-.+.++.++ ...++=..++-+.++-.++.-|+++-..|.+++++.+.
T Consensus 34 ~~~vl~~l~~~~~~~~~~~~~~l~~iv-------~~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~ 98 (198)
T TIGR03481 34 HGALLDVMKEAKKLGYQGRYTKLAPAV-------REAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSI 98 (198)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHH-------HHhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 445566666655566777788889998 77889999999999999999999999999999998554
No 109
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=34.09 E-value=1.6e+02 Score=31.02 Aligned_cols=105 Identities=16% Similarity=0.049 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC---Ccccc--c-hH-
Q 008923 249 APGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN---TRFFR--S-TL- 314 (548)
Q Consensus 249 ~G~~sdaQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~---~tfNi--S-T~- 314 (548)
.|.=+.++.+-++.++ .+|+| .+++..+.+++++.-..+...+ ..+-+-|.+..+. ..++. | +.
T Consensus 8 ~~sKs~~~r~l~~a~l-~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~i~~~~s~~s~ 85 (409)
T cd01556 8 PGSKSISHRALLLAAL-AEGESRIENLLDSDDTLATLEALRALGAKIEEEG-GTVEIVGGGGLGLPPEAVLDCGNSGTTM 85 (409)
T ss_pred CCchHHHHHHHHHHHh-cCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEEcCCCCCCCCCceEEcCCchHHH
Confidence 3444566666666666 67766 6788999999998876665432 3445545433222 23232 1 22
Q ss_pred -HHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 315 -FVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 315 -laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
+...+++.++.++..+|.....++.=..+.++|++||+++.
T Consensus 86 ~~l~~l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~ 127 (409)
T cd01556 86 RLLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIE 127 (409)
T ss_pred HHHHHHHHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEE
Confidence 11122233456888888744433322456999999999875
No 110
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=32.43 E-value=6.7e+02 Score=28.17 Aligned_cols=205 Identities=15% Similarity=0.059 Sum_probs=121.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHH---HHHHHHHhhhcCCCHHHH--HHHHHHHHhhCCCCC
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESL---LSAFLIGQRMNRETDREL--KAYCLAFDDELGPPP 289 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQ---igAFLiaLR~KGET~eEI--aGfa~Amr~~~~~i~ 289 (548)
|.++++.+..|. ..|+...+..-.++ -...|++++.. .++......-.-.+...| .-...++++-..+..
T Consensus 42 IP~~~~lv~~g~---~~~a~~~i~~tn~~--p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~ 116 (457)
T COG0493 42 IPEPIGLVREGV---DHEAIKLIHKTNNL--PAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGE 116 (457)
T ss_pred CCCHHHHHhcCC---cHHHHHHHHHhCCC--ccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCC
Confidence 445566677775 44554444444322 22267777754 344433321122222322 223344444433333
Q ss_pred CC---CCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCC---CCC-----------cHHHHHHhCCC
Q 008923 290 VA---DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPK---GGV-----------TEEQMLKFMGA 352 (548)
Q Consensus 290 ~~---~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSk---sGS-----------t~ADvLEaLGi 352 (548)
.+ ....|=|+|.|-+|.. +|..++..|+.|..+++..-..- +|. ..-++|+.+|+
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~--------~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLA--------AADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CCCCCCCCEEEEECCCchHhh--------hHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCe
Confidence 22 1246778888888876 78999999999999998875420 111 23567888887
Q ss_pred CC--------CCCHHHHHHHHHhccCceEEe---------------cccccchhhhhHHHhhcccCCCCcc-ccchhhhh
Q 008923 353 ST--------NLSVLQAKELLEDEEIGFAYV---------------SLREARPSLYSLIGLREHIKKRPPV-ATSEKVQQ 408 (548)
Q Consensus 353 ~i--------~lspe~a~~~Lee~~~GfaFL---------------~Ap~~hPamk~l~~iRk~LGvRTPL-~npak~l~ 408 (548)
.+ +.+.++..+.++. +|+ .++..|.||..+..++++...-.+- .+|
T Consensus 189 ~~~~~~~vG~~it~~~L~~e~Da-----v~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~----- 258 (457)
T COG0493 189 EFKLNVRVGRDITLEELLKEYDA-----VFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTP----- 258 (457)
T ss_pred EEEEcceECCcCCHHHHHHhhCE-----EEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCC-----
Confidence 52 5666666666633 333 2568899999999998765443221 111
Q ss_pred hhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEE
Q 008923 409 FVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVV 446 (548)
Q Consensus 409 ~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV 446 (548)
.+.+.+..|+|.-+..+.=. ....++|.+....+
T Consensus 259 --~~~gk~vvVIGgG~Ta~D~~--~t~~r~Ga~~v~~~ 292 (457)
T COG0493 259 --PAKGKRVVVIGGGDTAMDCA--GTALRLGAKSVTCF 292 (457)
T ss_pred --CCCCCeEEEECCCCCHHHHH--HHHhhcCCeEEEEe
Confidence 12334788999988765433 66778898877777
No 111
>PRK10867 signal recognition particle protein; Provisional
Probab=29.33 E-value=8.4e+02 Score=27.25 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=93.2
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHH----hccCccCCCCCCCCHHHHHHHHHHhhhc--CC------CHHH-HHH-HHH
Q 008923 214 RLVGALREVLAGGHLGYEEVQGVLRD----VLPLQVDNKAPGVSESLLSAFLIGQRMN--RE------TDRE-LKA-YCL 279 (548)
Q Consensus 214 ~~~~~L~kL~~G~~LS~eEA~~am~~----IL~~~~~~~~G~~sdaQigAFLiaLR~K--GE------T~eE-IaG-fa~ 279 (548)
.+...++++.....|+.++..+++++ ++ .-+++...+-.|+-.++-+ |+ ++.+ +.. ..+
T Consensus 8 ~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll-------~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (433)
T PRK10867 8 RLSSAFKKLRGKGRLTEADIKEALREVRLALL-------EADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVND 80 (433)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 36677888887788988766555544 56 6788888888888888654 32 2322 322 223
Q ss_pred HHHhhCCC----CCCC-C-CCCeeEEcCCCCCCCccccchHHHHHHHhhc-CCeEEeecCCCCCCCCCCcHHHH----HH
Q 008923 280 AFDDELGP----PPVA-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCY-GESCLLHGAEWMPPKGGVTEEQM----LK 348 (548)
Q Consensus 280 Amr~~~~~----i~~~-~-~~~vDi~GTGGDG~~tfNiST~laAiVaAaa-Gv~VaKHGnRsvsSksGSt~ADv----LE 348 (548)
.+.+.+.. +... . ..++-+||.+|.|++|+-.- .|..++.. |.+|+.=..+-.- .+. .+- .+
T Consensus 81 el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaak---LA~~l~~~~G~kV~lV~~D~~R--~aa--~eQL~~~a~ 153 (433)
T PRK10867 81 ELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGK---LAKYLKKKKKKKVLLVAADVYR--PAA--IEQLKTLGE 153 (433)
T ss_pred HHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHH---HHHHHHHhcCCcEEEEEccccc--hHH--HHHHHHHHh
Confidence 44443322 2111 1 23567899999999875433 22233445 8888876555432 222 333 36
Q ss_pred hCCCCC-----CCCHHHHHH-HH---HhccCceEEecccccc----hhhhhHHHhhc
Q 008923 349 FMGAST-----NLSVLQAKE-LL---EDEEIGFAYVSLREAR----PSLYSLIGLRE 392 (548)
Q Consensus 349 aLGi~i-----~lspe~a~~-~L---ee~~~GfaFL~Ap~~h----Pamk~l~~iRk 392 (548)
.+|+++ ..+|.++.+ .+ ...+.-+.++..+--+ ..|..+..+.+
T Consensus 154 ~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~ 210 (433)
T PRK10867 154 QIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKA 210 (433)
T ss_pred hcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 677763 235655543 33 2223456777777544 34444444444
No 112
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.78 E-value=6.8e+02 Score=27.52 Aligned_cols=157 Identities=10% Similarity=0.047 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcC-----CCHHHHHH-HHHHHHhhCCC---CC-CCCCCCe
Q 008923 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR-----ETDRELKA-YCLAFDDELGP---PP-VADVKSL 296 (548)
Q Consensus 227 ~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KG-----ET~eEIaG-fa~Amr~~~~~---i~-~~~~~~v 296 (548)
.++.+....+.+.+. ..++++.-+-.++--++-+. ++.+.+.- +.+.+.+.... .. ......+
T Consensus 105 ~~~~~~~~~l~~~L~-------~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi 177 (388)
T PRK12723 105 EINHPTILKIEDILR-------ENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVF 177 (388)
T ss_pred ccCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEE
Confidence 344555556666666 67788887777777665431 23333221 22223332211 11 1112356
Q ss_pred eEEcCCCCCCCccccchHHHHHHHh--hcCCeEEeecCCCCCCCCCCcHHHHHHh----CCCCC--CCCHHHHHHHHHhc
Q 008923 297 THYGEPYDGNTRFFRSTLFVAAVRS--CYGESCLLHGAEWMPPKGGVTEEQMLKF----MGAST--NLSVLQAKELLEDE 368 (548)
Q Consensus 297 Di~GTGGDG~~tfNiST~laAiVaA--aaGv~VaKHGnRsvsSksGSt~ADvLEa----LGi~i--~lspe~a~~~Lee~ 368 (548)
-.+|..|-|++|.-.-.+ +.+... ..|.+|..=..+.. +.|+ .+-|.. +|+++ ..++++..+.+.+.
T Consensus 178 ~lvGptGvGKTTT~aKLA-~~~~~~~~~~g~~V~lit~Dt~--R~aa--~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 178 ILVGPTGVGKTTTIAKLA-AIYGINSDDKSLNIKIITIDNY--RIGA--KKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEECCCCCCHHHHHHHHH-HHHHhhhccCCCeEEEEeccCc--cHHH--HHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 789999999986433222 222222 24677876444432 2333 333444 88875 34566666655432
Q ss_pred -cCceEEecccccchh-hhhHHHhhcccC
Q 008923 369 -EIGFAYVSLREARPS-LYSLIGLREHIK 395 (548)
Q Consensus 369 -~~GfaFL~Ap~~hPa-mk~l~~iRk~LG 395 (548)
+.-+.+++.+-.+|. ...+..+++.+.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 367888888876662 223556655554
No 113
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=28.05 E-value=98 Score=28.56 Aligned_cols=16 Identities=38% Similarity=0.353 Sum_probs=14.7
Q ss_pred HHHHHhhcCCeEEeec
Q 008923 316 VAAVRSCYGESCLLHG 331 (548)
Q Consensus 316 aAiVaAaaGv~VaKHG 331 (548)
+|.++++.|.+|..+|
T Consensus 42 ~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 42 VAVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHHCCCcEEEEE
Confidence 7888999999999999
No 114
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.96 E-value=4.3e+02 Score=28.05 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCC------CC
Q 008923 268 RETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKG------GV 341 (548)
Q Consensus 268 GET~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSks------GS 341 (548)
|.+.+|+..+++.= ...++.-.+-+ -.+..|..|..|.- + ..++++.+|++|.-.|+-+--.+. =|
T Consensus 75 GLs~eelE~la~~~--~a~KvsrrDl~--~vvA~~~~gaTTVA---a-TMi~A~~aGI~vfaTGGiGGVHrGAe~t~DIS 146 (310)
T COG2313 75 GLSKEELELLAREG--NAMKVSRRDLP--FVVAEGKNGATTVA---A-TMILAALAGIKVFATGGIGGVHRGAEHTFDIS 146 (310)
T ss_pred ecCHHHHHHHhhcC--ccceeeccchH--HHHhcCcCCcchHH---H-HHHHHHHcCceEEEecCcccccCCcccccccc
Confidence 67888888775322 12222211111 13456666766521 1 345666788888887765433321 14
Q ss_pred cHHHHHHh---------CCCCCCCCHHHHHHHHHhccCceEEe-cccccchhhhhHHHhhcccCCCCc--cccchhhhhh
Q 008923 342 TEEQMLKF---------MGASTNLSVLQAKELLEDEEIGFAYV-SLREARPSLYSLIGLREHIKKRPP--VATSEKVQQF 409 (548)
Q Consensus 342 t~ADvLEa---------LGi~i~lspe~a~~~Lee~~~GfaFL-~Ap~~hPamk~l~~iRk~LGvRTP--L~npak~l~~ 409 (548)
+|+.|- -|++--++....-+.||. .|+-.+ |+.+-.|++.. |+=|+|.| +.+|+..
T Consensus 147 --aDL~ELa~T~v~vV~AGaKsILDi~~TlE~LET--~gVPvvg~~t~~fPaF~s-----R~Sg~~~pl~l~~pe~i--- 214 (310)
T COG2313 147 --ADLTELARTNVTVVCAGAKSILDIGLTLEVLET--QGVPVVGYQTNEFPAFFS-----RESGFRVPLRLESPEEI--- 214 (310)
T ss_pred --hhHHHHhcCCeEEEecCchhhhccHHHHHHHHh--cCcceeecCCCcccchhc-----ccCCCcCccccCCHHHH---
Confidence 666664 355555677777778888 554322 56666777653 45566655 3444443
Q ss_pred hcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEE
Q 008923 410 VRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVK 447 (548)
Q Consensus 410 LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~ 447 (548)
-.+......+|.+..++|-
T Consensus 215 -------------------a~~~~t~~~lglegg~lVa 233 (310)
T COG2313 215 -------------------ARILATKWQLGLEGGLLVA 233 (310)
T ss_pred -------------------HHHHHHHHHhCCCCceEEe
Confidence 3444555666766555553
No 115
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=25.88 E-value=1.1e+02 Score=28.57 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=41.2
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCH-HHHHHHHHHHHhh
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETD-RELKAYCLAFDDE 284 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~-eEIaGfa~Amr~~ 284 (548)
-.+.+++..+. .+.+|.+.|++++..++ ++.-++ ..++-.+-.+..|. +|+..+++.+.+.
T Consensus 42 ~~l~~li~lv~-~g~It~~~ak~vl~~~~-------~~~~~~---~~ii~~~~l~~isd~~el~~~v~~vi~~ 103 (147)
T smart00845 42 EHLAELLKLIE-DGTISGKIAKEVLEELL-------ESGKSP---EEIVEEKGLKQISDEGELEAIVDEVIAE 103 (147)
T ss_pred HHHHHHHHHHH-cCCCcHHHHHHHHHHHH-------HcCCCH---HHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 34777775544 45899999999999999 444443 34444555566676 4888888766543
No 116
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=25.42 E-value=3.8e+02 Score=24.33 Aligned_cols=62 Identities=19% Similarity=0.086 Sum_probs=51.5
Q ss_pred CcHHHHHHHHhcCC--CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Q 008923 213 MRLVGALREVLAGG--HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (548)
Q Consensus 213 ~~~~~~L~kL~~G~--~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~ 283 (548)
.-|+.+-+++..+. .+|..|.++....++ ..+-||.. .+|-.+..||-|..|+..+.+.|-.
T Consensus 23 ~gWr~LAe~lg~~~~fr~S~~el~~cslkvl-------~p~gSPsk--~LL~~~~~rg~Tv~~Ll~~L~~Mgh 86 (97)
T cd08783 23 KGWRKLAELAGSRGRFRLSCLDLEQCSLKVL-------EPEGSPSR--SLLKLLGERGCTVTELSEFLQAMEH 86 (97)
T ss_pred CCHHHHHHHHccCCccccCHHHHHHHHHHHh-------cCCCCchH--HHHHHHHHcCCcHHHHHHHHHHhhh
Confidence 45888888888876 689999988888888 55566654 6889999999999999999998853
No 117
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.15 E-value=1.1e+02 Score=30.95 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCC
Q 008923 215 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGP 287 (548)
Q Consensus 215 ~~~~L~kL~~G~---~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~ 287 (548)
..+.+..|-+.+ ..+....+..++..| ...++-.-++.+.++=-+|.-|+++...|.+|+++.+..
T Consensus 37 a~~~ls~lk~~~~~~k~dp~~l~~~v~~~l-------~p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q 105 (202)
T COG2854 37 ADKVLSILKNNQAKIKQDPQYLRQIVDQEL-------LPYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLEQ 105 (202)
T ss_pred HHHHHHHHhccchhhccCHHHHHHHHHHHh-------hhhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 344555555543 789999999999999 788999999999999999999999999999999987653
No 118
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.00 E-value=9.4e+02 Score=26.39 Aligned_cols=158 Identities=12% Similarity=0.053 Sum_probs=106.9
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecC----CCCC-------C-----CCCCcHHHHHHhCCCCCCCC
Q 008923 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGA----EWMP-------P-----KGGVTEEQMLKFMGASTNLS 357 (548)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGn----Rsvs-------S-----ksGSt~ADvLEaLGi~i~ls 357 (548)
+...|+=-|.+..+.+++.-. .-=.++.+|+-++||=. ..++ . ..+.++-++.|.+-.+.+-
T Consensus 14 ~~~iIAEig~NHnG~le~A~~-lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~- 91 (347)
T COG2089 14 KPFIIAEIGANHNGDLERAKE-LIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEW- 91 (347)
T ss_pred CcEEEeeecccccCcHHHHHH-HHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHH-
Confidence 456677778888889998776 55567889999999877 2222 1 3566677888888666432
Q ss_pred HHHHHHHHHhccCceEEecccccchhhhhHHHh-hcccCCCCccccchhhhhhhcccCCCeE-EEeecCCCchHHHHHHH
Q 008923 358 VLQAKELLEDEEIGFAYVSLREARPSLYSLIGL-REHIKKRPPVATSEKVQQFVRAQGREAI-VAGFYHEGYEEPLLMLM 435 (548)
Q Consensus 358 pe~a~~~Lee~~~GfaFL~Ap~~hPamk~l~~i-Rk~LGvRTPL~npak~l~~LNPa~a~~q-ViGVfh~~~~e~~Aeal 435 (548)
..+..+.-++ .|+.|+..|-=.-+...+-.+ =..+++.++=+|=-.++.++.-.+.+.. =+|+..-+=.+.-.+++
T Consensus 92 ~~~Lke~a~~--~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~ 169 (347)
T COG2089 92 HAQLKEYARK--RGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAIL 169 (347)
T ss_pred HHHHHHHHHH--cCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHH
Confidence 3355566667 899999988777777777666 3456666643333344455544444333 34888877778888889
Q ss_pred HHcCCCeEEEEEcCCCcccc
Q 008923 436 KRRGVHSGLVVKGEEGALSM 455 (548)
Q Consensus 436 ~~lG~~~alVV~G~eG~iS~ 455 (548)
+..|.....+.|......++
T Consensus 170 r~~g~~~i~LLhC~s~YPap 189 (347)
T COG2089 170 RENGNPDIALLHCTSAYPAP 189 (347)
T ss_pred HhcCCCCeEEEEecCCCCCC
Confidence 99988767777876554333
No 119
>PLN02327 CTP synthase
Probab=24.37 E-value=83 Score=36.25 Aligned_cols=54 Identities=9% Similarity=-0.118 Sum_probs=39.7
Q ss_pred hhhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhcc
Q 008923 93 LLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 93 ~~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (548)
+-+++ .|++.++++.+. ..++ +.+ ++.++ ..+|.+| |+|+|.+...||--+++-
T Consensus 360 L~~~D-GIvvpGGfG~~~---~~G~-i~a-i~~are~~iP~LGIClGmQl~viefaRnvlG~ 415 (557)
T PLN02327 360 LKGAD-GILVPGGFGDRG---VEGK-ILA-AKYARENKVPYLGICLGMQIAVIEFARSVLGL 415 (557)
T ss_pred hccCC-EEEeCCCCCCcc---cccH-HHH-HHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence 33344 567777776655 3355 455 67775 6899999 999999999999988775
No 120
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=23.94 E-value=2.2e+02 Score=30.34 Aligned_cols=104 Identities=15% Similarity=0.014 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCC-CCCcccc--c-hH--HH
Q 008923 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-GNTRFFR--S-TL--FV 316 (548)
Q Consensus 250 G~~sdaQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGD-G~~tfNi--S-T~--la 316 (548)
|.-+.++.+-++.+| .+|+| .+++....+++++.-..+...+ ..+-+-|+|+. .....|+ | |. |.
T Consensus 7 ~sKs~~~r~l~~a~l-a~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~i~~g~sgt~~r~l 84 (409)
T TIGR01356 7 GSKSITHRALILAAL-AEGETRVRNLLRSEDTLATLDALRALGAKIEDGG-EVAVIEGVGGKEPQAELDLGNSGTTARLL 84 (409)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC-CEEEEEccCCCCCCCEEEecCchHHHHHH
Confidence 333444554444444 36655 6789999999998766654322 33444444431 1112211 1 21 23
Q ss_pred HHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 317 AAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 317 AiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
..+++.++.+|..+|...+.++-=..+.+.|+.||+.+.
T Consensus 85 ~~l~a~~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~ 123 (409)
T TIGR01356 85 TGVLALADGEVVLTGDESLRKRPMGRLVDALRQLGAEIS 123 (409)
T ss_pred HHHHHcCCCeEEEECCcccccCCcHHHHHHHHHCCCEEE
Confidence 334555678999999877654433345889999999874
No 121
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=23.90 E-value=1.7e+02 Score=28.34 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=64.0
Q ss_pred eeEEcCCCCCCCccccchHHHHHHHhhcCCeEEee-----cCCCCCCCCCCcHHHHHHhCC-CCCCCCHHHHHHHHHhc-
Q 008923 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLH-----GAEWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDE- 368 (548)
Q Consensus 296 vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKH-----GnRsvsSksGSt~ADvLEaLG-i~i~lspe~a~~~Lee~- 368 (548)
|-+.|++|.|++| . |..+++..|++=.-- ++-+..+.-|--...+++.=. ++-+....-+.+.+++.
T Consensus 3 iiilG~pGaGK~T-----~-A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 3 ILILGPPGAGKST-----L-AKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred EEEECCCCCCHHH-----H-HHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence 4588999999964 4 888999998876653 333444445554455555555 23234445666666662
Q ss_pred -cCceEEecccccchhhhhHHHhhcccCCC
Q 008923 369 -EIGFAYVSLREARPSLYSLIGLREHIKKR 397 (548)
Q Consensus 369 -~~GfaFL~Ap~~hPamk~l~~iRk~LGvR 397 (548)
..||-|..-|.....++.+-..-+++|.+
T Consensus 77 ~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~ 106 (178)
T COG0563 77 CKAGFILDGFPRTLCQARALKRLLKELGVR 106 (178)
T ss_pred ccCeEEEeCCCCcHHHHHHHHHHHHHcCCC
Confidence 11799999999999888888777776643
No 122
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=23.06 E-value=1.8e+02 Score=31.15 Aligned_cols=101 Identities=17% Similarity=-0.005 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC----Cccc---cchHH
Q 008923 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRFF---RSTLF 315 (548)
Q Consensus 250 G~~sdaQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~----~tfN---iST~l 315 (548)
+.-+..+.+-++.+| ..|+| .+++....+++++.-..+.. ..+.+-|.+..|. ..++ ..|.
T Consensus 21 ~sks~~~r~l~~a~L-a~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~---~~~~i~~~~~~~~~~~~~~i~~~~sg~~- 95 (435)
T PRK02427 21 GSKSISHRALLLAAL-AEGETTITNLLRSEDTLATLNALRALGVEIED---DEVVVEGVGGGGLKEPEDVLDCGNSGTT- 95 (435)
T ss_pred CChHHHHHHHHHHHh-cCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc---ceEEEEccCCCCCCCCCCEEEccCchHH-
Confidence 344455555444444 56654 56788888899887665533 2233434433321 1111 1122
Q ss_pred HHH---HHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 316 VAA---VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 316 aAi---VaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
.-+ ++|.++-++..+|+..+.+.-=..+.++|++||+++.
T Consensus 96 ~r~l~~laa~~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~ 138 (435)
T PRK02427 96 MRLLTGLLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIE 138 (435)
T ss_pred HHHHHHHHHhCCCeEEEECChhhccCChHHHHHHHHHCCCEEE
Confidence 222 2333445888999775543322445899999999875
No 123
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=23.02 E-value=2.4e+02 Score=32.81 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCC----cc---ccch--HHHHH
Q 008923 255 SLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT----RF---FRST--LFVAA 318 (548)
Q Consensus 255 aQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~~----tf---NiST--~laAi 318 (548)
.|..+++++.-.+|++ .+++....++|+..-..+...+...+-+-|.+..+.. .+ |-.| .+++.
T Consensus 324 ~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~~~~~i~g~~~~~~~~~~~~i~~~~s~ts~~ll~a 403 (735)
T PRK14806 324 ISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHNGRVTIHGVGLHGLKAPPGPLYMGNSGTSMRLLSG 403 (735)
T ss_pred HHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCCCEEEEEcCCCCCCCCCCceeeccCchHHHHHHHH
Confidence 3434455555566644 4577888888888765554211223334443322210 11 1112 11222
Q ss_pred HHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 319 VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 319 VaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
+++....+|...|...+..+--..+.|+|++||+++.
T Consensus 404 ~la~~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~ 440 (735)
T PRK14806 404 LLAAQSFDSVLTGDASLSKRPMERVAKPLREMGAVIE 440 (735)
T ss_pred HHhcCCCeEEEECChhhhhCChHHHHHHHHHCCCEEE
Confidence 3333445788899988876655556788999999874
No 124
>PRK10444 UMP phosphatase; Provisional
Probab=22.80 E-value=5.6e+02 Score=25.96 Aligned_cols=122 Identities=11% Similarity=-0.060 Sum_probs=68.1
Q ss_pred CeeEEcCCCCCCCccccchHHHHH-HHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC-----CHHHHHHHHHhc
Q 008923 295 SLTHYGEPYDGNTRFFRSTLFVAA-VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL-----SVLQAKELLEDE 368 (548)
Q Consensus 295 ~vDi~GTGGDG~~tfNiST~laAi-VaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~l-----spe~a~~~Lee~ 368 (548)
++|+=||=++|..- ..-+. -++ -+.+.|.+++.=-|++..+ .....+-|+.+|+++.. +..-+.+.|.+.
T Consensus 5 ~~DlDGtL~~~~~~-~p~a~-~~l~~L~~~g~~~~~~Tn~~~~~--~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVA-VPGAA-EFLHRILDKGLPLVLLTNYPSQT--GQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCee-CccHH-HHHHHHHHCCCeEEEEeCCCCCC--HHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 46777887777743 33333 333 4567899999988888544 34458888889997543 245566777762
Q ss_pred cCceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHc
Q 008923 369 EIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRR 438 (548)
Q Consensus 369 ~~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~l 438 (548)
+..-+|+... +.+..-. + +.|+.. ... . +..-|+|....-.-+.+..++..+
T Consensus 81 ~~~~v~~~g~---~~l~~~l--~-~~g~~~--~~~-~---------~~~Vvvg~~~~~~~~~l~~a~~~l 132 (248)
T PRK10444 81 EGKKAYVIGE---GALIHEL--Y-KAGFTI--TDI-N---------PDFVIVGETRSYNWDMMHKAAYFV 132 (248)
T ss_pred CCCEEEEEcC---HHHHHHH--H-HCcCEe--cCC-C---------CCEEEEeCCCCCCHHHHHHHHHHH
Confidence 2223444332 2222111 1 223321 111 1 267788875444456666666554
No 125
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=22.45 E-value=5.3e+02 Score=27.89 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=73.3
Q ss_pred cCCeEEeecCCCCCCCCCCcHHHH---HHhCCCC---CCCCHHHHHHHHHhccCce-EEecc---cccch--hhhhHHHh
Q 008923 323 YGESCLLHGAEWMPPKGGVTEEQM---LKFMGAS---TNLSVLQAKELLEDEEIGF-AYVSL---REARP--SLYSLIGL 390 (548)
Q Consensus 323 aGv~VaKHGnRsvsSksGSt~ADv---LEaLGi~---i~lspe~a~~~Lee~~~Gf-aFL~A---p~~hP--amk~l~~i 390 (548)
.|..|+.-.....|++-|-|++|- |+++|++ +....+.+.+.+.+. .++ -++.| ..-|| ++=.+..|
T Consensus 71 LG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~-~~~~pvINaGDG~~qHPTQ~LLDl~TI 149 (316)
T COG0540 71 LGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEF-SGVNPVINAGDGSHQHPTQALLDLYTI 149 (316)
T ss_pred cCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHh-cCCCceEECCCCCCCCccHHHHHHHHH
Confidence 588999988888888999999985 5667877 467777777777762 233 35665 36777 56788899
Q ss_pred hcccCCCCccccchhhhhhhcccCCCeEEEe-ecCCCchHHHHHHHHHcCC
Q 008923 391 REHIKKRPPVATSEKVQQFVRAQGREAIVAG-FYHEGYEEPLLMLMKRRGV 440 (548)
Q Consensus 391 Rk~LGvRTPL~npak~l~~LNPa~a~~qViG-Vfh~~~~e~~Aeal~~lG~ 440 (548)
|++.|- ...+ +..++| +-|-....-.+++|.++|.
T Consensus 150 ~~~~G~------~~gl---------~iaivGDlkhsRva~S~~~~L~~~ga 185 (316)
T COG0540 150 REEFGR------LDGL---------KIAIVGDLKHSRVAHSNIQALKRFGA 185 (316)
T ss_pred HHHhCC------cCCc---------EEEEEccccchHHHHHHHHHHHHcCC
Confidence 999995 2232 455555 4566667778888888883
No 126
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=22.22 E-value=89 Score=34.58 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=100.9
Q ss_pred CCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhCCC-c
Q 008923 105 TQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPP-D 183 (548)
Q Consensus 105 ~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~lp~-~ 183 (548)
..+++|+.||+...++.|++ | .++..|+|||+-|+-+|+ . |.+|...+..--......++- +
T Consensus 9 ~~g~~Lt~eE~~~~~~~i~~---G------~~~d~QiaAfLmAl~~kG---e-----T~eEi~g~t~Am~~~~~~l~~~~ 71 (405)
T TIGR02644 9 RDGKKLSDEEINFFINGYTN---G------EIPDYQMSALLMAIYFNG---M-----TDEETAYLTKAMIDSGEVLDLSS 71 (405)
T ss_pred HcCCCCCHHHHHHHHHHHHc---C------CCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcCCCcc
Confidence 46789999997777766432 3 455579999999999999 5 667765544322211112221 1
Q ss_pred e-E-EE-eCCCCCccccCCCC---------CCCC--CCCCC--ccCcHHHHHHHHh-cCCCCCHHHHHHHHHHhccCccC
Q 008923 184 V-I-FI-ADPEGSIMGGGGSI---------GPHY--SGNDP--REMRLVGALREVL-AGGHLGYEEVQGVLRDVLPLQVD 246 (548)
Q Consensus 184 ~-~-f~-a~p~g~iMg~~~~~---------g~~~--~~~~~--~~~~~~~~L~kL~-~G~~LS~eEA~~am~~IL~~~~~ 246 (548)
. . ++ -|-.|=+ |.+-++ |+.- .+++- ...--.+.|+.+. -.-+|+.+|+++.++..= +-+-
T Consensus 72 ~~~~~vD~~gTGGd-G~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~~~~~l~~~G-~~fl 149 (405)
T TIGR02644 72 LPGPKVDKHSTGGV-GDKVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAEFIEIVNKVG-LAII 149 (405)
T ss_pred cCCCeeEEeCCCCC-CCCchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHHHHHHHHHcC-eEEe
Confidence 0 0 11 1222222 221111 1100 01111 1112455677666 345899999999998741 1111
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCCCeeE-EcCCCCCCCcccc--chHHHH---HHH
Q 008923 247 NKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTH-YGEPYDGNTRFFR--STLFVA---AVR 320 (548)
Q Consensus 247 ~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~~vDi-~GTGGDG~~tfNi--ST~laA---iVa 320 (548)
.-.++..|+. --|.++|-.--|.+-+-=.+-+...+-...- .+.-++|+ ||. |.--.++ .-.++- -+.
T Consensus 150 ~~~~~l~PAd--k~l~~lRd~~~Tv~sipLi~aSimSKK~A~G-~~~~vlDVk~G~---gAfm~~~e~a~~LA~~~~~~g 223 (405)
T TIGR02644 150 GQTKDLAPAD--KKLYALRDVTGTVDSIPLIASSIMSKKLAAG-ADAIVLDVKVGS---GAFMKTLEDAKELAKLMVEIG 223 (405)
T ss_pred cCccccCcch--hHHHHHhhcccccCcHHHHHHHHHHHHHhcC-CCeEEEeecccC---CCCcCCHHHHHHHHHHHHHHH
Confidence 0123455543 2477788544477777333333333211111 12346787 555 4333232 222121 133
Q ss_pred hhcCCeEEeecC
Q 008923 321 SCYGESCLLHGA 332 (548)
Q Consensus 321 AaaGv~VaKHGn 332 (548)
..+|.+|+-+..
T Consensus 224 ~~~g~~~~a~~t 235 (405)
T TIGR02644 224 KGAGRKTSALLT 235 (405)
T ss_pred HHcCCeEEEEec
Confidence 557887665443
No 127
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=21.84 E-value=1.2e+02 Score=28.71 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCC----
Q 008923 216 VGALREVLAGGHL---GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP---- 288 (548)
Q Consensus 216 ~~~L~kL~~G~~L---S~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i---- 288 (548)
.+++..+..++.. +.++.++.++.++ ...++-..++-+.++=.++.-|++|-..|++++++.+...
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~v-------~~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~ 78 (170)
T PF05494_consen 6 DDVLSILKDNKSKYKQDPEARRAKIEDIV-------DPYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKR 78 (170)
T ss_dssp HHHHHHHHT-HHHHTT-HHHHHHHHHHHT-------GGGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccCCHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555432 4688999999999 8899999999999999999999999999999999765431
Q ss_pred -CCCCCCCeeEEcCCCCCC---CccccchH
Q 008923 289 -PVADVKSLTHYGEPYDGN---TRFFRSTL 314 (548)
Q Consensus 289 -~~~~~~~vDi~GTGGDG~---~tfNiST~ 314 (548)
..-....+.+.++.-.+. ++..+.|.
T Consensus 79 l~~y~~~~v~~~~~~~~~~~~~~~~~V~t~ 108 (170)
T PF05494_consen 79 LDEYSGQSVEVLSEPPNGRKGGNRAIVRTE 108 (170)
T ss_dssp HHT-SS-EEEE------S-TT-SEEEEEEE
T ss_pred HHhhCCCeEEEEeccCCCCCCCCEEEEEEE
Confidence 111123455655544443 56666555
No 128
>PHA00438 hypothetical protein
Probab=21.72 E-value=1.3e+02 Score=26.31 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Q 008923 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (548)
Q Consensus 228 LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~ 283 (548)
-++-+....++.+= ....|++.|+.||.++.+--.|-||+.+.-+.+++
T Consensus 32 asYl~~sG~i~~lR-------~~G~SE~~IaGfl~Gl~yAs~~ldeme~r~~ql~e 80 (81)
T PHA00438 32 ASYLEQSGEIRLLR-------QAGYSEAFIAGFLAGLQYASRTLDEMEARREQLRE 80 (81)
T ss_pred HHHHHHhhhHHHHH-------HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555555666665 56689999999999999999999999877665543
No 129
>PRK14974 cell division protein FtsY; Provisional
Probab=21.57 E-value=6e+02 Score=27.35 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHhhhc--------CCCHHH--HHHHHHHHHhhCCCCC---C------C-CCCCeeEEcCCCCCCCc
Q 008923 249 APGVSESLLSAFLIGQRMN--------RETDRE--LKAYCLAFDDELGPPP---V------A-DVKSLTHYGEPYDGNTR 308 (548)
Q Consensus 249 ~G~~sdaQigAFLiaLR~K--------GET~eE--IaGfa~Amr~~~~~i~---~------~-~~~~vDi~GTGGDG~~t 308 (548)
+.+++..-.-.++-.++-+ +.+.++ ...+.+++.+.....+ . . ....+-.+|.+|.|++|
T Consensus 76 ~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~vi~~~G~~GvGKTT 155 (336)
T PRK14974 76 ESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTT 155 (336)
T ss_pred HCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhhhccCCCeEEEEEcCCCCCHHH
Confidence 5667777666776666544 234333 2334444444332211 1 1 12356789999999986
Q ss_pred cccchHHHHHHHhhcCCeEEeecCCCCCCCCCC--cHHHHHHhCCCCC
Q 008923 309 FFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGV--TEEQMLKFMGAST 354 (548)
Q Consensus 309 fNiST~laAiVaAaaGv~VaKHGnRsvsSksGS--t~ADvLEaLGi~i 354 (548)
.--- .|..+...|.+|+....+.. +.|. -.....+.+|+++
T Consensus 156 tiak---LA~~l~~~g~~V~li~~Dt~--R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 156 TIAK---LAYYLKKNGFSVVIAAGDTF--RAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred HHHH---HHHHHHHcCCeEEEecCCcC--cHHHHHHHHHHHHHcCCce
Confidence 3221 22234567889988665532 2233 0122345578765
No 130
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=21.38 E-value=1.2e+02 Score=25.13 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHH
Q 008923 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL 261 (548)
Q Consensus 227 ~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFL 261 (548)
.++.||.++.+-.+- ...+++.|||..|
T Consensus 27 ~~~~~eVe~~I~kla-------kkG~tpSqIG~iL 54 (60)
T PF08069_consen 27 KYSPEEVEELIVKLA-------KKGLTPSQIGVIL 54 (60)
T ss_dssp -S-HHHHHHHHHHHC-------CTTHCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-------HcCCCHHHhhhhh
Confidence 478999999999988 7779999999876
No 131
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=20.99 E-value=3e+02 Score=27.46 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCC
Q 008923 216 VGALREVLAGGHL---GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (548)
Q Consensus 216 ~~~L~kL~~G~~L---S~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~ 286 (548)
.+++..|...+.. ..++.+..++..+ ...++-..++.+.++-.+|.-|+++-..|++++++.+.
T Consensus 36 ~~vl~~l~~~~~~~~~~~~~~~~~v~~~l-------~p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv 102 (211)
T PRK15117 36 QKTFDRLKNEQPKIRANPDYLRTIVDQEL-------LPYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLK 102 (211)
T ss_pred HHHHHHHHhCHHhhccCHHHHHHHHHHHc-------cccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 3444544443332 5788888888888 78899999999999999999999999999999998664
No 132
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=20.43 E-value=2.2e+02 Score=30.97 Aligned_cols=99 Identities=18% Similarity=0.028 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCC-CCCCeeEEcCCC--C---------------CCC
Q 008923 253 SESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVA-DVKSLTHYGEPY--D---------------GNT 307 (548)
Q Consensus 253 sdaQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~-~~~~vDi~GTGG--D---------------G~~ 307 (548)
+.++..-++.+|. +|++ .+++..+.+++++.-..+... +...+.+-|.|+ . -..
T Consensus 23 s~~~r~l~~a~la-~~~s~i~~~~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~g~sgt 101 (443)
T PLN02338 23 SLSNRILLLAALS-EGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGT 101 (443)
T ss_pred HHHHHHHHHHHhC-CCCEEEcCCCcCHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCCcCCcccccccceEEcCCcch
Confidence 3444444444443 6554 678888999998866554321 112233323221 1 002
Q ss_pred ccccchHHHHHHHhh-cCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 308 RFFRSTLFVAAVRSC-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 308 tfNiST~laAiVaAa-aGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
+++. +.+++++. ...+|...|...+.++-=..+.+.|++||+.+.
T Consensus 102 ~~r~---l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~ 147 (443)
T PLN02338 102 AMRP---LTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVE 147 (443)
T ss_pred HHHH---HHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEE
Confidence 2222 23444332 225888999998776655556899999999874
No 133
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=20.39 E-value=2.4e+02 Score=32.74 Aligned_cols=104 Identities=13% Similarity=-0.052 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCC--CCCCc----cccchHHH
Q 008923 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPY--DGNTR----FFRSTLFV 316 (548)
Q Consensus 250 G~~sdaQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGG--DG~~t----fNiST~la 316 (548)
|.=+-.+.+-++.+| ..|++ .+++....+++++.-..+...+ ..+.+-|.|+ +.... -|.+|.+-
T Consensus 23 gsKs~s~R~l~lAaL-a~g~s~i~~~l~s~D~~~~l~aL~~LGa~i~~~~-~~i~I~g~g~~l~~~~~~i~~g~sGtt~r 100 (661)
T PRK11860 23 GSKSISNRVLLLAAL-SEGTTTVRDLLDSDDTRVMLDALRALGCGVEQLG-DTYRITGLGGQFPVKQADLFLGNAGTAMR 100 (661)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEEccCCccHHHHHHHHHHHHcCCEEEecC-CEEEEECCCCCcCCCCceEEeCCchHHHH
Confidence 444455555555555 35655 3678888888888766553322 3344544432 11111 14455533
Q ss_pred HHH--HhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 008923 317 AAV--RSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (548)
Q Consensus 317 AiV--aAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~ 355 (548)
+++ ++..+-.+..||...+.++-=..+.++|+.||+++.
T Consensus 101 ~Ll~~~al~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~ 141 (661)
T PRK11860 101 PLTAALALLGGEYELSGVPRMHERPIGDLVDALRQLGCDID 141 (661)
T ss_pred HHHHHHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEE
Confidence 333 233356889999998777654556889999999874
Done!