Query 008923
Match_columns 548
No_of_seqs 212 out of 1551
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkm_A Anthranilate phosphorib 100.0 8.3E-72 2.8E-76 577.1 28.7 305 211-530 2-341 (346)
2 1khd_A Anthranilate phosphorib 100.0 2E-71 6.9E-76 574.6 28.6 290 211-517 9-323 (345)
3 1o17_A Anthranilate PRT, anthr 100.0 5.5E-71 1.9E-75 571.3 27.1 301 213-531 1-333 (345)
4 1vqu_A Anthranilate phosphorib 100.0 2.6E-70 8.8E-75 571.7 30.7 304 210-528 22-372 (374)
5 3r88_A Anthranilate phosphorib 100.0 1.1E-69 3.8E-74 567.4 29.8 303 213-531 24-369 (377)
6 2elc_A Trp D, anthranilate pho 100.0 5.1E-69 1.7E-73 553.4 28.1 291 217-528 2-327 (329)
7 2dsj_A Pyrimidine-nucleoside ( 100.0 1.7E-53 5.9E-58 450.4 20.9 281 213-530 1-311 (423)
8 3h5q_A PYNP, pyrimidine-nucleo 100.0 1E-52 3.5E-57 445.9 22.6 277 212-532 3-323 (436)
9 1brw_A PYNP, protein (pyrimidi 100.0 2.9E-51 9.9E-56 434.9 25.1 284 213-532 1-320 (433)
10 1uou_A Thymidine phosphorylase 100.0 8.2E-51 2.8E-55 435.1 24.1 282 214-531 29-347 (474)
11 2tpt_A Thymidine phosphorylase 100.0 2.8E-49 9.5E-54 420.4 25.9 283 213-530 2-322 (440)
12 1qdl_B Protein (anthranilate s 98.0 1.7E-06 5.9E-11 81.3 1.9 112 98-211 47-180 (195)
13 3r75_A Anthranilate/para-amino 97.8 4.5E-06 1.5E-10 92.9 0.8 106 98-210 488-617 (645)
14 1i1q_B Anthranilate synthase c 97.6 1.6E-05 5.4E-10 74.4 2.3 106 100-210 51-173 (192)
15 1a9x_B Carbamoyl phosphate syn 97.4 2.7E-05 9.3E-10 81.7 0.1 105 98-210 233-356 (379)
16 1wl8_A GMP synthase [glutamine 97.1 0.00027 9.2E-09 65.7 3.4 105 99-209 46-169 (189)
17 3l7n_A Putative uncharacterize 96.9 0.00031 1.1E-08 68.0 2.0 112 96-209 45-182 (236)
18 2a9v_A GMP synthase; structura 96.6 0.00047 1.6E-08 65.9 1.3 107 99-210 57-183 (212)
19 1o1y_A Conserved hypothetical 96.2 0.0016 5.4E-08 63.4 2.3 109 98-209 59-188 (239)
20 3m3p_A Glutamine amido transfe 95.6 0.0048 1.6E-07 61.0 2.4 109 97-209 49-179 (250)
21 3uow_A GMP synthetase; structu 95.3 0.0033 1.1E-07 68.7 0.2 122 99-222 53-225 (556)
22 2vxo_A GMP synthase [glutamine 95.0 0.0066 2.2E-07 68.3 1.8 120 98-223 74-211 (697)
23 1gpm_A GMP synthetase, XMP ami 94.7 0.0084 2.9E-07 64.9 1.4 119 98-222 52-197 (525)
24 2ywb_A GMP synthase [glutamine 94.6 0.0076 2.6E-07 64.9 0.8 107 98-210 44-168 (503)
25 2w7t_A CTP synthetase, putativ 94.1 0.055 1.9E-06 53.7 5.7 52 94-150 65-118 (273)
26 1s1m_A CTP synthase; CTP synth 93.8 0.035 1.2E-06 60.9 4.0 50 98-152 345-396 (545)
27 2v4u_A CTP synthase 2; pyrimid 93.5 0.041 1.4E-06 55.1 3.5 107 98-209 92-256 (289)
28 2vpi_A GMP synthase; guanine m 93.4 0.012 4.1E-07 56.5 -0.5 106 99-210 70-193 (218)
29 3tqi_A GMP synthase [glutamine 92.9 0.011 3.7E-07 64.2 -1.9 109 98-211 55-189 (527)
30 1l9x_A Gamma-glutamyl hydrolas 91.7 0.016 5.4E-07 58.9 -2.3 65 94-159 84-154 (315)
31 3fij_A LIN1909 protein; 11172J 91.0 0.12 4.1E-06 50.5 3.3 91 118-209 97-221 (254)
32 4gud_A Imidazole glycerol phos 88.2 0.029 9.8E-07 52.6 -3.5 55 93-152 38-96 (211)
33 1vco_A CTP synthetase; tetrame 80.2 1.3 4.5E-05 48.6 4.5 54 94-152 353-408 (550)
34 2elc_A Trp D, anthranilate pho 59.2 10 0.00035 38.8 5.3 114 106-240 9-143 (329)
35 3d54_D Phosphoribosylformylgly 59.1 2 6.7E-05 39.8 -0.0 94 117-211 67-191 (213)
36 3r88_A Anthranilate phosphorib 58.1 9.5 0.00032 39.8 4.9 114 106-240 35-171 (377)
37 1o17_A Anthranilate PRT, anthr 58.0 10 0.00036 39.0 5.2 48 107-171 13-60 (345)
38 4hkm_A Anthranilate phosphorib 57.0 12 0.00039 38.5 5.3 49 106-171 15-63 (346)
39 3ol3_A Putative uncharacterize 54.0 54 0.0018 28.8 8.2 71 210-285 28-99 (107)
40 1j8m_F SRP54, signal recogniti 54.0 1.7E+02 0.0059 28.8 13.4 155 214-382 6-193 (297)
41 1vqu_A Anthranilate phosphorib 53.9 14 0.00047 38.6 5.3 47 107-170 37-83 (374)
42 1khd_A Anthranilate phosphorib 53.1 12 0.00042 38.5 4.8 48 107-171 23-70 (345)
43 1ka9_H Imidazole glycerol phos 50.0 3.1 0.00011 38.5 -0.3 52 99-152 43-111 (200)
44 3nva_A CTP synthase; rossman f 48.6 14 0.00046 40.6 4.4 53 94-151 348-402 (535)
45 2ywj_A Glutamine amidotransfer 46.8 4.1 0.00014 37.1 -0.0 107 97-208 38-167 (186)
46 2lky_A Uncharacterized protein 44.3 24 0.00082 31.3 4.5 67 211-285 26-92 (112)
47 2tpt_A Thymidine phosphorylase 44.2 24 0.00083 37.6 5.4 195 106-327 13-235 (440)
48 1brw_A PYNP, protein (pyrimidi 43.9 22 0.00077 37.8 5.1 132 106-257 12-162 (433)
49 1vma_A Cell division protein F 42.9 1.3E+02 0.0045 30.0 10.3 108 215-334 30-142 (306)
50 3h5q_A PYNP, pyrimidine-nucleo 42.4 25 0.00086 37.5 5.2 144 107-274 16-180 (436)
51 1gpw_B Amidotransferase HISH; 42.0 6.2 0.00021 36.3 0.4 46 99-146 45-95 (201)
52 2dsj_A Pyrimidine-nucleoside ( 41.4 26 0.00089 37.3 5.1 116 104-240 10-145 (423)
53 1uou_A Thymidine phosphorylase 41.0 29 0.00098 37.5 5.4 145 106-274 39-205 (474)
54 1zu4_A FTSY; GTPase, signal re 40.1 1.2E+02 0.004 30.4 9.5 110 215-334 18-143 (320)
55 2ywd_A Glutamine amidotransfer 39.1 4.7 0.00016 36.6 -0.9 111 98-209 41-175 (191)
56 2kvc_A Putative uncharacterize 39.0 28 0.00094 30.4 4.0 67 211-285 24-90 (103)
57 2m0n_A Putative uncharacterize 36.7 74 0.0025 28.1 6.4 59 226-287 39-101 (112)
58 1ejd_A MURA, EPT, UDP-N-acetyl 33.2 26 0.00089 36.4 3.5 170 257-448 26-217 (419)
59 2v3c_C SRP54, signal recogniti 27.7 4.8E+02 0.016 27.2 12.1 160 214-383 7-194 (432)
60 2ej7_A HCG3 gene; HCG3 protein 25.4 47 0.0016 26.4 3.0 36 338-383 5-40 (82)
61 2o0b_A 3-phosphoshikimate 1-ca 23.5 1.2E+02 0.004 32.0 6.4 105 249-356 163-286 (450)
62 1vli_A Spore coat polysacchari 23.0 3.9E+02 0.013 27.9 10.2 154 294-452 28-197 (385)
63 1vc4_A Indole-3-glycerol phosp 22.9 2.4E+02 0.0081 27.3 8.1 113 323-450 44-165 (254)
64 1rf6_A 5-enolpyruvylshikimate- 22.4 1.4E+02 0.0048 30.9 6.8 101 255-356 22-138 (427)
65 2kn2_A Calmodulin; S MAPK phos 21.9 2.6E+02 0.009 21.2 7.2 48 215-268 31-78 (92)
66 1q7r_A Predicted amidotransfer 21.8 11 0.00037 35.5 -1.7 111 98-211 62-197 (219)
67 2nv0_A Glutamine amidotransfer 21.7 12 0.0004 34.3 -1.5 112 98-212 40-176 (196)
68 1vkm_A Conserved hypothetical 21.4 53 0.0018 33.5 3.1 105 268-385 73-190 (297)
69 2xxa_A Signal recognition part 20.2 2.3E+02 0.0077 29.7 7.8 153 215-381 9-195 (433)
No 1
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.3e-72 Score=577.08 Aligned_cols=305 Identities=19% Similarity=0.229 Sum_probs=264.7
Q ss_pred ccCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCC
Q 008923 211 REMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPV 290 (548)
Q Consensus 211 ~~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~ 290 (548)
|++.++++|+|+.+|++||+||++++|+.|| +|+++|+|+||||++||+||||+||++||++||+++..++++
T Consensus 2 m~~~~~e~l~~~~~~~~Lt~eEa~~~~~~il-------~G~~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~~v~~ 74 (346)
T 4hkm_A 2 MPITPQQALQRTIEHREIFHDEMVDLMRQIM-------RGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEV 74 (346)
T ss_dssp -CCCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCC
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCC
Confidence 5678899999999999999999999999999 999999999999999999999999999999999999999887
Q ss_pred CC-CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcc
Q 008923 291 AD-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEE 369 (548)
Q Consensus 291 ~~-~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~ 369 (548)
++ .++||+|||||||.+||||||+ +|+|+|++|++|+|||||++||++|+ +|+||+||+++++++++++++|++
T Consensus 75 ~~~~~~vD~~gTGGdg~~t~niSt~-~a~v~Aa~G~~V~khG~r~~ss~~Gs--aD~LeaLG~~~~ls~~~~~~~l~~-- 149 (346)
T 4hkm_A 75 TDRRHMVDIVGTGGDGSHTFNISTC-AMFVAAAGGAKVAKHGNRSVSSKSGS--ADALEALGAVIELQPEQVAASLAQ-- 149 (346)
T ss_dssp SCCTTEEEEECC------CCCHHHH-HHHHHHHTTCEEEEEC---------C--HHHHHTTTCCCCCCHHHHHHHHHH--
T ss_pred CCCccceeecCCCCCCccccCcHHH-HHHHHHhcCCCeeecCCCCCCCCcCH--HHHHHHcCCCcccCHHHHHHHHHh--
Confidence 54 3579999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred CceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcC
Q 008923 370 IGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGE 449 (548)
Q Consensus 370 ~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~ 449 (548)
.||+|+|||.|||+|++++++|++||+||++|..+++ +||+++++||+||||++|.++|+++++.+|+++++||||.
T Consensus 150 ~g~~fl~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL---~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~g~ 226 (346)
T 4hkm_A 150 TGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL---TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGR 226 (346)
T ss_dssp HSEEEECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGG---CCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred cCcchhchhhhChhHHHHhhheeccCCCchhhhcccc---cCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEecC
Confidence 9999999999999999999999999999999999886 8999999999999999999999999999999999999999
Q ss_pred CCc--ccccCCeeEEEecCCceeEEeecCccCCCC----------CCcCCccHHH-----------HHHHhcHHHHHHHh
Q 008923 450 EGA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVE----------STFEGDGLYN-----------LARLLNCLKFMYYI 506 (548)
Q Consensus 450 eG~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~----------~~~en~~il~-----------~~~~LNAAaaLyv~ 506 (548)
||+ ++++++|++|++++|...+|.++++++++. ++.+|+++++ .++++|||++||++
T Consensus 227 ~G~dEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl~g~~~~~~d~v~lnaa~~L~~~ 306 (346)
T 4hkm_A 227 DGMDELSLGAGTLVGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVA 306 (346)
T ss_dssp TTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCC---------CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHT
T ss_pred CCchhhhhccCceEEEEeCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHc
Confidence 997 999999999999999888999998887764 3336655432 45669999999999
Q ss_pred cccCchhhh-----------hhhhccccccccCcc
Q 008923 507 SSINIVTSN-----------LVLQGCHARVSTSRS 530 (548)
Q Consensus 507 g~a~~l~~g-----------~~~~~~~~~~~~~~~ 530 (548)
|+++++++| -.++++.+.|+.|++
T Consensus 307 g~a~sl~eg~~~A~~~l~sG~A~~~l~~~i~~s~~ 341 (346)
T 4hkm_A 307 GVADSIADGIVRARQVLADGSARACLDAYVAFTQQ 341 (346)
T ss_dssp TSSSSHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999986655 556777777777654
No 2
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=2e-71 Score=574.62 Aligned_cols=290 Identities=17% Similarity=0.226 Sum_probs=259.4
Q ss_pred ccCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCC
Q 008923 211 REMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPV 290 (548)
Q Consensus 211 ~~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~ 290 (548)
..|.|+++|+|+.+|++||+||++++|+.|| +|+++|+|+||||++||+||||+|||+||++||+++..+++.
T Consensus 9 ~~~~~~~~i~kl~~g~~Lt~eEa~~~~~~il-------~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~ 81 (345)
T 1khd_A 9 TIFTHQPILEKLFKSQSMTQEESHQLFAAIV-------RGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPR 81 (345)
T ss_dssp ---CCHHHHHHHHTTCCCCHHHHHHHHHHHT-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCC
T ss_pred cccCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCC
Confidence 4467899999999999999999999999999 999999999999999999999999999999999999998876
Q ss_pred CCCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCC-CCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcc
Q 008923 291 ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPP-KGGVTEEQMLKFMGASTNLSVLQAKELLEDEE 369 (548)
Q Consensus 291 ~~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsS-ksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~ 369 (548)
+..+.||+|||||||.+||||||+ +|+|+|++|+||+|||||++|| |+|| +|+||+||++++++++++.++|++
T Consensus 82 ~~~~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~Gv~VakHGnr~~ss~~~Gs--aDvLeaLGv~~~~~~~~~~~~l~~-- 156 (345)
T 1khd_A 82 PDYDFADIVGTGGDGTNSINISTA-SAFVAASCGAKVAKHGNRSVCQPLAGS--CDLLQAFGIRLDMSAEDSRQALDD-- 156 (345)
T ss_dssp CSSCCEEEEECCCCSSCBCCCHHH-HHHHHHHHTCCEEEEECC-----------CHHHHHTTCCTTCCHHHHHHHHHH--
T ss_pred CCCCeeeecCCCCCCCCccchHHH-HHHHHHhCCCcEEEeCCCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--
Confidence 433589999999999999999999 9999999999999999999999 9999 999999999999999999999999
Q ss_pred CceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcC
Q 008923 370 IGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGE 449 (548)
Q Consensus 370 ~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~ 449 (548)
.||+|+|+|.|||+|++++++|++||+||++|..+++ +||+++++||+||||++|.++|+++++.+|.++++||||
T Consensus 157 ~gi~fl~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL---~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~G- 232 (345)
T 1khd_A 157 LNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPL---INPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHG- 232 (345)
T ss_dssp HSEEEEEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGG---CCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEEE-
T ss_pred CCEEEEehhhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEeC-
Confidence 9999999999999999999999999999999998886 899999999999999999999999999999999999999
Q ss_pred CCc--ccccCCeeEEEecCCceeEEeecCccCCCCC----------CcCCccHH------------HHHHHhcHHHHHHH
Q 008923 450 EGA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVES----------TFEGDGLY------------NLARLLNCLKFMYY 505 (548)
Q Consensus 450 eG~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~----------~~en~~il------------~~~~~LNAAaaLyv 505 (548)
||+ +|++++|+||++++|...+|++++++++... +.||++++ +.++++|||++||+
T Consensus 233 dG~dEis~~~~t~v~~~~~g~i~~~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~~ 312 (345)
T 1khd_A 233 GGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKL 312 (345)
T ss_dssp TTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT
T ss_pred CCcceecCCCceEEEEEeCCEEEEEEECHHHcCCCcCCccccCCCCHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHH
Confidence 996 9999999999999998888999998887732 23444432 24566999999999
Q ss_pred hcccCchhhhhh
Q 008923 506 ISSINIVTSNLV 517 (548)
Q Consensus 506 ~g~a~~l~~g~~ 517 (548)
+|+ +++++|+.
T Consensus 313 ~g~-~~~~eg~~ 323 (345)
T 1khd_A 313 FGQ-DNLRHNAQ 323 (345)
T ss_dssp TTC-CCHHHHHH
T ss_pred cCC-CCHHHHHH
Confidence 999 98887753
No 3
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=5.5e-71 Score=571.33 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=275.2
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
|+|+++|+|+.+|++||+||++++|+.|| +|+++|+|+||||++||+||||+|||+||++||+++..+++++
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~- 72 (345)
T 1o17_A 1 MNINEILKKLINKSDLEINEAEELAKAII-------RGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVP- 72 (345)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCT-
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-
Confidence 67899999999999999999999999999 9999999999999999999999999999999999999988764
Q ss_pred CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCce
Q 008923 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (548)
Q Consensus 293 ~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~Gf 372 (548)
+.||+|||||||.+||||||+ +|+|+|++ +||+|||||++|||+|| +|+||+||++++++++++.+++++ .||
T Consensus 73 -~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~-v~VaKHGnR~~ss~~Gs--aDvLEaLGv~~~~~~e~~~~~l~~--~gi 145 (345)
T 1o17_A 73 -NAIDTAGTGGDGLGTVNVSTA-SAILLSLV-NPVAKHGNRAVSGKSGS--ADVLEALGYNIIVPPERAKELVNK--TNF 145 (345)
T ss_dssp -TCEECCC----CCCBCCHHHH-HHHHHTTT-SCEEEEECCCSSSSCSH--HHHHHHHTBCCCCCHHHHHHHHHH--HSE
T ss_pred -CceeeCCCCCCCCCccchHHH-HHHHHHHc-CCEEEECCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--cCE
Confidence 589999999999999999999 99999999 99999999999999999 999999999999999999999999 999
Q ss_pred EEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc
Q 008923 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (548)
Q Consensus 373 aFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~ 452 (548)
+|+|+|.|||+|++++++|++||+||++|..+++ +||+++++||+||||+.|.++|+++|+++|.++++||||.||+
T Consensus 146 ~fl~a~~~hPa~k~l~~~R~~lg~rTvfN~lgpL---~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv~G~~G~ 222 (345)
T 1o17_A 146 VFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPL---TNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGI 222 (345)
T ss_dssp EEEEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGG---CCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTB
T ss_pred EEEehHHhChHHHHHHHHHHHhCCCCHHHHHHHh---cCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEEECCCCH
Confidence 9999999999999999999999999999999886 8999999999999999999999999999999999999999997
Q ss_pred --ccccCCeeEEEecCCceeEEeecCccCCCCC----------CcCCccHH-----------HHHHHhcHHHHHHHhccc
Q 008923 453 --LSMTTRLRSVNASKGLPVNYCSGFRSLNVES----------TFEGDGLY-----------NLARLLNCLKFMYYISSI 509 (548)
Q Consensus 453 --iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~----------~~en~~il-----------~~~~~LNAAaaLyv~g~a 509 (548)
++++++|.|+++++|...+|.++++++++.. +.||++++ +.++++|||++||++|++
T Consensus 223 dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~v~~naa~~L~~~g~~ 302 (345)
T 1o17_A 223 DEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRV 302 (345)
T ss_dssp SSCCSSSEEEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhcccCCcEEEEEeCCeEEEEEEChhhcCCCCCChhccCCCCHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999997888998888876542 23454442 245669999999999999
Q ss_pred Cchhhhhh---------hhccccccccCccc
Q 008923 510 NIVTSNLV---------LQGCHARVSTSRSM 531 (548)
Q Consensus 510 ~~l~~g~~---------~~~~~~~~~~~~~~ 531 (548)
+++++|+. ++++...|+++.++
T Consensus 303 ~~~~eg~~~A~~~i~~A~~~l~~~~~~~~~~ 333 (345)
T 1o17_A 303 GDFREGYEYADHLIEKSLDKLNEIISMNGDV 333 (345)
T ss_dssp SSHHHHHHHHHHHHTTHHHHHHHHHHHSBCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999984 67788888877764
No 4
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=2.6e-70 Score=571.68 Aligned_cols=304 Identities=16% Similarity=0.194 Sum_probs=268.3
Q ss_pred CccCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCC-
Q 008923 210 PREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP- 288 (548)
Q Consensus 210 ~~~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i- 288 (548)
++.|+|+++|+|+.+|++||+||++++|+.|| +|+++|+|+||||++||+||||+|||+||++||+++..++
T Consensus 22 ~~~~~~~~~i~kl~~G~~Lt~eEa~~~~~~il-------~G~~~~~QiaAfL~Alr~kGet~eEiag~~~am~~~~~~~~ 94 (374)
T 1vqu_A 22 ESSTSWYLLLQQLIDGESLSRSQAAELMQGWL-------SEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQSKMGT 94 (374)
T ss_dssp ---CCTHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCC--
T ss_pred CccCCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCccc
Confidence 45578999999999999999999999999999 9999999999999999999999999999999999999987
Q ss_pred -------CCCC--CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHH
Q 008923 289 -------PVAD--VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVL 359 (548)
Q Consensus 289 -------~~~~--~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe 359 (548)
+++. .+.||+|||||||.+||||||+ +|+|+|++|+||+|||||++||++|+ +|+||+||++++++++
T Consensus 95 ~~~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~Gv~VaKHGnR~~ss~~Gs--aDvLEaLGv~~~~~~e 171 (374)
T 1vqu_A 95 GENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTA-VAFVAAAYGVPVAKHGNRSASSLTGS--ADVLEALGVNLGASPE 171 (374)
T ss_dssp ---------CCSSSCCEEEEECC---CCBCCHHHH-HHHHHHHTTCCEEEEEECC--CTTCH--HHHHHHTTCCTTCCHH
T ss_pred cccccccCccccCCCeeEEeCCCCCCCCccchHHH-HHHHHHhCCCCEEEECCCCCCCCCCH--HHHHHhCCCCCCCCHH
Confidence 4442 2579999999999999999999 99999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhccCceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcC
Q 008923 360 QAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRG 439 (548)
Q Consensus 360 ~a~~~Lee~~~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG 439 (548)
+++++|++ .||+|+|+|.|||+|++++++|++||+||++|..+++ +||+++++||+||||++|.++|+++|+++|
T Consensus 172 ~~~~~l~~--~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfNilgpL---~NPa~~~~qv~GV~~~~~~~~~a~~l~~lG 246 (374)
T 1vqu_A 172 KVQAALQE--VGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPL---VNPLRPTGQVVGLFTPKLLTTVAQALDNLG 246 (374)
T ss_dssp HHHHHHHH--TSEEEEEETTSSGGGGGGHHHHHHHCSCCHHHHHGGG---CCTTCCSEEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHH--CCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCceEEeecCHHHHHHHHHHHHHcC
Confidence 99999999 9999999999999999999999999999999998886 899999999999999999999999999999
Q ss_pred CCeEEEEEcCCCc--ccccCCeeEEEecCCceeEEeecCccCCCCC----------CcCCccHH-----------HH-HH
Q 008923 440 VHSGLVVKGEEGA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVES----------TFEGDGLY-----------NL-AR 495 (548)
Q Consensus 440 ~~~alVV~G~eG~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~----------~~en~~il-----------~~-~~ 495 (548)
+++++||||.||+ +++.++|.||++++|....|.+.++++++.. +.||++++ +. ++
T Consensus 247 ~~~alVv~G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~~v 326 (374)
T 1vqu_A 247 KQKAIVLHGRERLDEAGLGDLTDLAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAVLQGKGTQAQQDAV 326 (374)
T ss_dssp CSEEEEEEETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCeEEEEECCCCccccccCCceEEEEEeCCEEEEEEECHHHCCCccccccccCCCCHHHHHHHHHHHHCCCCCchHHHHH
Confidence 9999999999997 9999999999999998778998888776642 22444431 24 67
Q ss_pred HhcHHHHHHHhcccC--chhhhh-----------hhhccccccccC
Q 008923 496 LLNCLKFMYYISSIN--IVTSNL-----------VLQGCHARVSTS 528 (548)
Q Consensus 496 ~LNAAaaLyv~g~a~--~l~~g~-----------~~~~~~~~~~~~ 528 (548)
++|||++||++|+++ ++++|+ .++++...|++|
T Consensus 327 ~~naa~~L~~~g~~~~~~~~eg~~~A~~~i~sG~A~~~l~~~v~~~ 372 (374)
T 1vqu_A 327 ALNAALALQVAGAVPLLDHAQGVSVAKEILQTGTAWAKLAQLVYFL 372 (374)
T ss_dssp HHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHh
Confidence 799999999999999 887665 456666666544
No 5
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=1.1e-69 Score=567.39 Aligned_cols=303 Identities=16% Similarity=0.150 Sum_probs=277.4
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
..|.++|++|.+|++||+||++++|+.|| +|+++|+|+||||++||+||||+|||+||++||+++..+++.+.
T Consensus 24 ~t~~~il~~l~~g~~Ls~eEa~~~~~~i~-------~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~v~~~~ 96 (377)
T 3r88_A 24 PSWPQILGRLTDNRDLARGQAAWAMDQIM-------TGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADT 96 (377)
T ss_dssp CCHHHHHHHHHTTCCCCTTHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCTTC
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCcCCCcc
Confidence 36999999999999999999999999999 99999999999999999999999999999999999999887643
Q ss_pred --CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccC
Q 008923 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEI 370 (548)
Q Consensus 293 --~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~ 370 (548)
.+.||+|||||||.+||||||+ +|+|+|++|+||+|||||++|||+|+ +|+||+||+++++++++++++|++ .
T Consensus 97 ~~~~~vD~~gTGGdg~~T~niSt~-~A~v~Aa~Gv~VaKHGnR~~ss~~Gs--aDvLEaLGv~~~l~~e~~~~~l~~--~ 171 (377)
T 3r88_A 97 VPDDAVDVVGTGGDGVNTVNLSTM-AAIVVAAAGVPVVKHGNRAASSLSGG--ADTLEALGVRIDLGPDLVARSLAE--V 171 (377)
T ss_dssp SCTTCEEEEECCCCSCCBCCHHHH-HHHHHHHTTCCEEEEECCCSSSSCCH--HHHHHHTTCCCCCCHHHHHHHHHH--H
T ss_pred CCCCCeEEeCCCCCCcCccccHHH-HHHHHHhcCCeEEeECCCCCCCcccH--HHHHHHcCCCcccchHHHHHHHHH--h
Confidence 3589999999999999999999 99999999999999999999999999 999999999999999999999999 9
Q ss_pred ceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCC
Q 008923 371 GFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEE 450 (548)
Q Consensus 371 GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~e 450 (548)
||+|+|||.|||+|++++++|++||+||++|..+++ +||+++++||+||||++|.++|+++++.+| ++++||||.|
T Consensus 172 gi~fl~a~~~hPa~k~l~~vR~~Lg~rTifN~lgpL---~NPa~~~~~liGv~~~~l~~~~a~~l~~~~-~~a~vv~G~d 247 (377)
T 3r88_A 172 GIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPL---TNPARPRAGLIGCAFADLAEVMAGVFAARR-SSVLVVHGDD 247 (377)
T ss_dssp SEEEEEHHHHCGGGHHHHHHHHHHCSCCGGGGHHHH---CCTTCCSEEEEECSCTTTHHHHHHHHHHTT-CEEEEEEETT
T ss_pred ccccccchhhCHHHHHHHHHHHHhccCchhhhHHHh---cCcccccccccCCCCHHHhHHHHHHHHhcC-CeeEEecCCC
Confidence 999999999999999999999999999999999886 899999999999999999999999999998 7999999999
Q ss_pred Cc--ccccCCeeEEEecCCceeEEeecCccCCCCC----------CcCCccHHH-----------HHHHhcHHHHHHHhc
Q 008923 451 GA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVES----------TFEGDGLYN-----------LARLLNCLKFMYYIS 507 (548)
Q Consensus 451 G~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~----------~~en~~il~-----------~~~~LNAAaaLyv~g 507 (548)
|+ ++++++|+||++++|...+|++.++++++.. +.+|+++++ .+++||||++||+.|
T Consensus 248 GlDEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~~~~vL~G~~~~~~d~v~lNaa~~l~~~g 327 (377)
T 3r88_A 248 GLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHA 327 (377)
T ss_dssp SCSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCceeecccccceEEEeeceeEEEeccccccCCCcCCHHhccCCCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhc
Confidence 96 9999999999999998889999988887643 235555432 456699999999988
Q ss_pred ccC------------------chhhhhhhhccccccccCccc
Q 008923 508 SIN------------------IVTSNLVLQGCHARVSTSRSM 531 (548)
Q Consensus 508 ~a~------------------~l~~g~~~~~~~~~~~~~~~~ 531 (548)
.+. .|++|-.++++..+|+.|+.+
T Consensus 328 ~~~~~~~~~~sl~eG~~~A~e~l~sG~A~~kl~~~i~~s~~~ 369 (377)
T 3r88_A 328 GLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQI 369 (377)
T ss_dssp TTC--CCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHTC
T ss_pred CccccccccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 643 366777788888888877654
No 6
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=5.1e-69 Score=553.44 Aligned_cols=291 Identities=23% Similarity=0.289 Sum_probs=263.4
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCCCe
Q 008923 217 GALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSL 296 (548)
Q Consensus 217 ~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~~v 296 (548)
++|+|+.+|++||+||++++|+.|| +|+++|+|+||||++||+||||+|||+||++||+++..+++++..+.|
T Consensus 2 ~~l~k~~~g~~Lt~eEa~~~~~~i~-------~g~~~~~QiaAfL~alr~kget~~Eiag~~~am~~~~~~~~~~~~~~v 74 (329)
T 2elc_A 2 DAVKKAILGEVLEEEEAYEVMRALM-------AGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRPLL 74 (329)
T ss_dssp CHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCCCSSEE
T ss_pred hHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCee
Confidence 4789999999999999999999999 999999999999999999999999999999999999998876533589
Q ss_pred eEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEec
Q 008923 297 THYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVS 376 (548)
Q Consensus 297 Di~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL~ 376 (548)
|+|||||||.+||||||+ +|+|+|++|+||+|||||++|||+|+ +|+||+||++++++++++++++++ .||+|+|
T Consensus 75 D~~gTGGdg~~tfNiSt~-~a~v~Aa~Gv~V~kHGnr~~ss~~Gs--aDvLeaLG~~~~~~~~~~~~~l~~--~g~~fl~ 149 (329)
T 2elc_A 75 DIVGTGGDGKGLMNLSTL-AALVAAAGGVAVAKHGNRAASSRAGS--ADLLEALGVDLEAPPERVGEAIEE--LGFGFLF 149 (329)
T ss_dssp EEEECCCCSSCCCCCHHH-HHHHHHHTTCEEEEEECCCTTTTCSH--HHHHHHTTCCTTCCHHHHHHHHHH--HSEEEEE
T ss_pred EEcCCCCCCCCccccHHH-HHHHHHhCCCCEEEeCCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--CCEEEEE
Confidence 999999999999999999 99999999999999999999999999 999999999999999999999999 9999999
Q ss_pred ccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc--cc
Q 008923 377 LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA--LS 454 (548)
Q Consensus 377 Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~--iS 454 (548)
+|.|||+|++++++|++||+||++|..+++ +||+++++||+||||+.|.++|+++++++| ++++|||| ||+ ++
T Consensus 150 a~~~hPa~k~~~~~R~~lg~rTvfn~lgpL---~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alVv~G-~G~dE~~ 224 (329)
T 2elc_A 150 ARVFHPAMRHVAPVRAELGVRTVFNLLGPL---TNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHG-EGADELV 224 (329)
T ss_dssp HHHHCGGGGGTHHHHHHHCSCCHHHHHTTT---CCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEEEEE-TTBSSCC
T ss_pred hHHhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEEEeC-CChhhhc
Confidence 999999999999999999999999998886 889999999999999999999999999999 99999999 996 89
Q ss_pred ccCCeeEEEecCCceeEEeecCccCCCCC----------CcCCccHH------------HHHHHhcHHHHHHHhcccCch
Q 008923 455 MTTRLRSVNASKGLPVNYCSGFRSLNVES----------TFEGDGLY------------NLARLLNCLKFMYYISSINIV 512 (548)
Q Consensus 455 ~~g~T~v~el~~G~~i~y~~~~~~~~~~~----------~~en~~il------------~~~~~LNAAaaLyv~g~a~~l 512 (548)
.++|+|+++++|. |...++++++.. +.+|++++ +.++++|||++||++|+++++
T Consensus 225 -~~~t~v~~~~~g~---~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~~~g~~~~~ 300 (329)
T 2elc_A 225 -LGENRVVEVGKGA---YALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSL 300 (329)
T ss_dssp -SSCEEEEETTTEE---EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHTTSSSSH
T ss_pred -cCCeEEEEEECCE---EEECHHHcCCccCCcccCCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999884 888888776532 22333322 345669999999999999988
Q ss_pred hhhh-----------hhhccccccccC
Q 008923 513 TSNL-----------VLQGCHARVSTS 528 (548)
Q Consensus 513 ~~g~-----------~~~~~~~~~~~~ 528 (548)
++|+ .++++...|+++
T Consensus 301 ~~g~~~A~~~i~sG~A~~~l~~~~~~~ 327 (329)
T 2elc_A 301 KEGVALAREVLASGEAYLLLERYVAFL 327 (329)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHh
Confidence 7765 455565555543
No 7
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-53 Score=450.39 Aligned_cols=281 Identities=15% Similarity=0.085 Sum_probs=245.6
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
|+|+++|+|+.+|++||+||++++|+.|+ +|+++|+|+||||+++|+||||.+||+||++||+++..+++++.
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~~d~QiaAfL~Al~~kGet~eEiag~a~aM~~~~~~l~~~~ 73 (423)
T 2dsj_A 1 MNPVAFIREKREGKKHRREDLEAFLLGYL-------RDEVPDYQVSAWLMAAFLRGLDPEETLWLTETMARSGKVLDLSG 73 (423)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSBCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccc
Confidence 57899999999999999999999999999 99999999999999999999999999999999999999887653
Q ss_pred C-CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhccC
Q 008923 293 V-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEEI 370 (548)
Q Consensus 293 ~-~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee~~~ 370 (548)
. ..+|+|||||||. |+||+ +|+|+|+||++|+|||||++||++|+ +|+||+| |++++++++++.+++++ +
T Consensus 74 ~~~~vD~~gTGGdG~---niSt~-~a~vvAa~Gv~VaKhGnR~~ss~~Gs--aDvLEaL~Gv~i~l~~e~~~~~l~~--~ 145 (423)
T 2dsj_A 74 LPHPVDKHSSGGVGD---KVSLV-VGPILAASGCTFAKMSGRGLAHTGGT--IDKLESVPGWRGEMTEAEFLERARR--V 145 (423)
T ss_dssp SSSBEEEEEESSSCC---STHHH-HHHHHHTTTCBEEEECCCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--T
T ss_pred cCCceeEecCCCCCc---cHHHH-HHHHHHhCCCcEEEECCCCCCCCccH--HHHHHhCCCCCCCCCHHHHHHHHHH--c
Confidence 1 2799999999998 79999 99999999999999999999999999 9999999 99999999999999999 9
Q ss_pred ceEEecc-cccchhhhhHHHhhcccC-CCCccccchhhhhhhcccCCCeEEE------eec--CCCchHHHHHHHHHcCC
Q 008923 371 GFAYVSL-REARPSLYSLIGLREHIK-KRPPVATSEKVQQFVRAQGREAIVA------GFY--HEGYEEPLLMLMKRRGV 440 (548)
Q Consensus 371 GfaFL~A-p~~hPamk~l~~iRk~LG-vRTPL~npak~l~~LNPa~a~~qVi------GVf--h~~~~e~~Aeal~~lG~ 440 (548)
||+|+++ |.|||+|+++.++|++|| +||.++-.+.+++.-.|+++++||+ |+| ++++.+.++++|..+|.
T Consensus 146 Gi~f~~~~~~~~PA~k~l~~lR~~lgtv~Ti~nilgpl~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~~l~~lg~ 225 (423)
T 2dsj_A 146 GLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASSIMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTMVAIGQ 225 (423)
T ss_dssp SEEEESCGGGBSHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHHHHHHHHH
T ss_pred CEEEEecccccChHHHHHHHHHHHhcccCcHHHhHHHHhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999877 799999999999999999 7997766666522222889999999 779 88889999999999985
Q ss_pred CeEEEEEcCCCcccccCCeeEEEecCCceeEEeecCccCC--CCCCcCCccHH-----------HHHHHhcHHHHHHHhc
Q 008923 441 HSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLN--VESTFEGDGLY-----------NLARLLNCLKFMYYIS 507 (548)
Q Consensus 441 ~~alVV~G~eG~iS~~g~T~v~el~~G~~i~y~~~~~~~~--~~~~~en~~il-----------~~~~~LNAAaaLyv~g 507 (548)
+ .|.+.+++++||. .+++ .+++.||++++ +.++++|||++||++|
T Consensus 226 ~--------------~G~~~v~~l~dg~--------~plg~~~G~a~E~ae~i~vL~G~g~~~~~d~vl~nAa~~L~~ag 283 (423)
T 2dsj_A 226 G--------------AGRRVRALLTSME--------APLGRAVGNAIEVREAIEALKGEGPGDLLEVALALAEEALRLEG 283 (423)
T ss_dssp H--------------TTCEEEEEEEECS--------SCSSSEEESHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTT
T ss_pred H--------------cCCeEEEEEcCCC--------CcccccCCCHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHcC
Confidence 3 3789999998883 2232 24444554432 2345699999999999
Q ss_pred c-----cCchhhhhhhhccccccccCcc
Q 008923 508 S-----INIVTSNLVLQGCHARVSTSRS 530 (548)
Q Consensus 508 ~-----a~~l~~g~~~~~~~~~~~~~~~ 530 (548)
+ .+.|++|-.++++...|+++..
T Consensus 284 ~~l~~A~~~l~sG~A~~kl~~li~~~~g 311 (423)
T 2dsj_A 284 LDPALARKALEGGAALEKFRAFLEAQGG 311 (423)
T ss_dssp CCTHHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHhCC
Confidence 7 2678899999999999988754
No 8
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=1e-52 Score=445.90 Aligned_cols=277 Identities=16% Similarity=0.120 Sum_probs=244.2
Q ss_pred cCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCC
Q 008923 212 EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA 291 (548)
Q Consensus 212 ~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~ 291 (548)
+|+|+++|+|+.+|++||+||++++|+.|+ +|+++|.|+||||++||+||||.+||+||++||+++..+++++
T Consensus 3 ~m~~~~~I~kl~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~ 75 (436)
T 3h5q_A 3 AMRMIDIIEKKRDGHTLTTEEINFFIGGYV-------KGDIPDYQASSLAMAIYFQDMNDDERVALTMAMVNSGDMIDLS 75 (436)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCT
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCcc
Confidence 477999999999999999999999999999 9999999999999999999999999999999999999988765
Q ss_pred C--CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhc
Q 008923 292 D--VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDE 368 (548)
Q Consensus 292 ~--~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee~ 368 (548)
. .+.||+|||||||.+| ||+ +|+|+|++|++|+|||||++||++|+ +|+||+| |++++++++++.+++++
T Consensus 76 ~~~~~~vD~~gTGGdG~~t---St~-~A~vvAa~Gv~VaKHGnRa~ss~~Gs--aDvLEaLpGi~~~ls~e~~~~~l~~- 148 (436)
T 3h5q_A 76 DIKGVKVDKHSTGGVGDTT---TLV-LAPLVAAVDVPVAKMSGRGLGHTGGT--IDKLEAIDGFHVEIDEATFVKLVNE- 148 (436)
T ss_dssp TSCSCCEEEEECCCTTCCH---HHH-HHHHHHHTTCCEEEECCCCSSSSCCH--HHHHTTSTTCCCCCCHHHHHHHHHH-
T ss_pred ccCCCceeecCCCCCCCCh---HHH-HHHHHHhCCCCEEeECCCCCCCcccH--HHHHHhCcCCCCCCCHHHHHHHHHH-
Confidence 2 3589999999999987 888 99999999999999999999999999 9999999 99999999999999999
Q ss_pred cCceEEec-ccccchhhhhHHHhhcccCCCCccccchhhhhhhc--------ccCCCeEEEeec--------CCCchHHH
Q 008923 369 EIGFAYVS-LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVR--------AQGREAIVAGFY--------HEGYEEPL 431 (548)
Q Consensus 369 ~~GfaFL~-Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LN--------Pa~a~~qViGVf--------h~~~~e~~ 431 (548)
+||+|++ +|.|||+|++++++|++ +||.+|- + ++| |++++++|+||| ++++.+.|
T Consensus 149 -~g~~fl~~a~~~~Pa~~~l~~lR~~--~~Tvfni--P---LinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a~~l 220 (436)
T 3h5q_A 149 -NKVAVVGQSGNLTPADKKLYALRDV--TGTVNSI--P---LIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEAL 220 (436)
T ss_dssp -HSEEEECCCSSSCHHHHHHHHHHHT--TTCSSCH--H---HHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHHHHH
T ss_pred -cCCEEEccccccCHHHHHHHHHHhc--cCCcCCh--h---hhccchhccccccCCCeEEEeeecCccccCCCHHHHHHH
Confidence 9999998 79999999999999999 6897655 3 488 999999999999 99999999
Q ss_pred HHHHHHcCCCeEEEEEcCCCcccccCCeeEEEecCCceeEEeecCccCCC--CCCcCCccHH-----------HHHHHhc
Q 008923 432 LMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNV--ESTFEGDGLY-----------NLARLLN 498 (548)
Q Consensus 432 Aeal~~lG~~~alVV~G~eG~iS~~g~T~v~el~~G~~i~y~~~~~~~~~--~~~~en~~il-----------~~~~~LN 498 (548)
+++|..+|.++ |++.+|++++|. ++++. +++.||++++ +..+++|
T Consensus 221 A~~l~~lG~~~--------------G~~~v~~lt~~~--------~PlG~~~G~~~E~ae~~~vL~G~~~~~~~d~vl~n 278 (436)
T 3h5q_A 221 AHAMVRIGNNV--------------GRNTMAIISDMN--------QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTL 278 (436)
T ss_dssp HHHHHHHHHHH--------------TCCEEEEEEECS--------SCSSSEEESHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHhhhhc--------------CCeEEEEEcCCC--------CCCCCCCCCHHHHHHHHHHHCCCCCccHHHHHHHH
Confidence 99999999653 899999999884 23443 3444555432 2345599
Q ss_pred HHHHHHHhcccCchh-----------hhhhhhccccccccCcccc
Q 008923 499 CLKFMYYISSINIVT-----------SNLVLQGCHARVSTSRSMP 532 (548)
Q Consensus 499 AAaaLyv~g~a~~l~-----------~g~~~~~~~~~~~~~~~~~ 532 (548)
||++||++|++++++ +|-.++++.+.|+++..-|
T Consensus 279 Aa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~~l~~~v~~qGg~~ 323 (436)
T 3h5q_A 279 GSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDE 323 (436)
T ss_dssp HHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcCCcCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCc
Confidence 999999999997765 5566778888888876654
No 9
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=2.9e-51 Score=434.92 Aligned_cols=284 Identities=15% Similarity=0.152 Sum_probs=236.2
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
|+|+++|+|+.+|++||+||++++|+.|| +|+++|.|+||||+++|+||||.+||+||++||+++..+++++.
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~a~AM~~~~~~v~~~~ 73 (433)
T 1brw_A 1 MRMVDLIAKKRDGKALTKEEIEWIVRGYT-------NGDIPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSS 73 (433)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccc
Confidence 67899999999999999999999999999 99999999999999999999999999999999999999887653
Q ss_pred --CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcc
Q 008923 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (548)
Q Consensus 293 --~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee~~ 369 (548)
.+.+|+|||||||.+ +||+ +|+|+|++|++|+|||||++||++|+ +|+||+| |++++++++++.+++++
T Consensus 74 ~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnRa~ss~~Gs--aDvLEaL~Gv~i~ls~e~~~~~l~~-- 145 (433)
T 1brw_A 74 IRGVKVDKHSTGGVGDT---TTLV-LGPLVASVGVPVAKMSGRGLGHTGGT--IDKLESVPGFHVEISKDEFIRLVNE-- 145 (433)
T ss_dssp SCSCCEEEEECCCSSCC---HHHH-HHHHHHTTTCCEEEEECCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--
T ss_pred ccCCceeeCCCCCCCcc---hHHH-HHHHHHhCCCcEEEECCCCCCCCCCH--HHHHHHCcCceecCCHHHHHHHHHH--
Confidence 258999999999986 7888 99999999999999999999999999 9999999 99999999999999999
Q ss_pred CceEEecc-cccchhhhhHHHhhcccCCCCccccchhhhhhhcc--------cCCCeEEEee------c------CCCch
Q 008923 370 IGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGF------Y------HEGYE 428 (548)
Q Consensus 370 ~GfaFL~A-p~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNP--------a~a~~qViGV------f------h~~~~ 428 (548)
+||+|+|+ |.|||+|++++++|++| ||.+|. + ++|| .+++++|+|| | ++.+.
T Consensus 146 ~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--P---Lin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~~~l~ 218 (433)
T 1brw_A 146 NGIAIIGQTGDLTPADKKLYALRDVT--ATVNSI--P---LIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLA 218 (433)
T ss_dssp HSEEEEECCTTSCHHHHHHHHHHHHH--TCCCCH--H---HHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHHHHHH
T ss_pred cCeeEecCchhhCHHHHHHHHHHHhh--CCccCh--h---hcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHHHHHH
Confidence 99999999 59999999999999999 897776 3 3667 7889999999 8 77788
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCCcccccCCeeEEEecCCcee-EEeecCccCCCCCCcCCccHHHHHHHhcHHHHHHHhc
Q 008923 429 EPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPV-NYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYIS 507 (548)
Q Consensus 429 e~~Aeal~~lG~~~alVV~G~eG~iS~~g~T~v~el~~G~~i-~y~~~~~~~~~~~~~en~~il~~~~~LNAAaaLyv~g 507 (548)
+.|.++++.+|.++.+++++.+ .+.|.. .|... +-.. .+-+..+ ...-++.++++|||++||++|
T Consensus 219 ~~~v~~~~~~G~~~~~~i~~~~---~plg~~------~G~a~E~a~~-~~vL~G~----g~~~~~d~vl~nAa~~L~~~g 284 (433)
T 1brw_A 219 RVMVDIGKRVGRRTMAVISDMS---QPLGYA------VGNALEVKEA-IETLKGN----GPHDLTELCLTLGSHMVYLAE 284 (433)
T ss_dssp HHHHHHHHHTTCEEEEEEEECS---SCSSSE------ESSHHHHHHH-HHHHTTC----SCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEEcCCC---Cccccc------CCCHHHHHHH-HHHHCCC----CChhHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999642 222221 11010 0000 0001111 111123344599999999999
Q ss_pred ccCchhhh-----------hhhhccccccccCcccc
Q 008923 508 SINIVTSN-----------LVLQGCHARVSTSRSMP 532 (548)
Q Consensus 508 ~a~~l~~g-----------~~~~~~~~~~~~~~~~~ 532 (548)
+++++++| -.++++...|+++..-|
T Consensus 285 ~a~~~~eg~~~A~~~i~sG~A~~kl~~~i~~~~g~~ 320 (433)
T 1brw_A 285 KAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQGGDA 320 (433)
T ss_dssp SSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCG
T ss_pred CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCh
Confidence 99887655 45788888888876544
No 10
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=8.2e-51 Score=435.14 Aligned_cols=282 Identities=14% Similarity=0.118 Sum_probs=235.3
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCC
Q 008923 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADV 293 (548)
Q Consensus 214 ~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~ 293 (548)
+|+++|+|+.+|++||+||++++|+.|| +|+++|.|+||||+++|+||||.+||+||++||+++..+++++..
T Consensus 29 ~~~~iI~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfLmAlr~kGeT~eEiag~a~AMr~~~~~v~~~~~ 101 (474)
T 1uou_A 29 QLPELIRMKRDGGRLSEADIRGFVAAVV-------NGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEA 101 (474)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCCGG
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCcccc
Confidence 4899999999999999999999999999 999999999999999999999999999999999999999876531
Q ss_pred ---CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcc
Q 008923 294 ---KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (548)
Q Consensus 294 ---~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee~~ 369 (548)
+.||+|||||||.+ +||+ +|+|+|++|++|+|||||++||++|+ +|+||+| |++++++++++.+++++
T Consensus 102 ~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnRa~ss~~GS--aDvLEaLpGv~i~ls~e~~~~~l~~-- 173 (474)
T 1uou_A 102 WRQQLVDKHSTGGVGDK---VSLV-LAPALAACGCKVPMISGRGLGHTGGT--LDKLESIPGFNVIQSPEQMQVLLDQ-- 173 (474)
T ss_dssp GGGGBEEEEESCCTTCC---HHHH-HHHHHHTTTCBEEEECCCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--
T ss_pred cCCCeeEeCCCCCCCce---eHHH-HHHHHHhCCCCEEEECCCCCCCCCCH--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 58999999999998 8888 99999999999999999999999999 9999999 99999999999999999
Q ss_pred CceEEecc-cccchhhhhHHHhhcccCCCCccccchhhhhhhcc--------cCCCeEEEee------c------CCCch
Q 008923 370 IGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGF------Y------HEGYE 428 (548)
Q Consensus 370 ~GfaFL~A-p~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNP--------a~a~~qViGV------f------h~~~~ 428 (548)
+||+|+|+ |.|||+|++++++|+++ ||.+|. + ++|| .+++++|+|| | ++.+.
T Consensus 174 ~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--P---Linpsi~skklA~g~~~~VlgVk~G~gafm~~lde~~~la 246 (474)
T 1uou_A 174 AGCCIVGQSEQLVPADGILYAARDVT--ATVDSL--P---LITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELA 246 (474)
T ss_dssp HSEEEECCCSSSSHHHHHHHHHHHHT--TCSSCH--H---HHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHHHHHHH
T ss_pred cCeEEecCchhhCHHHHHHHHHHhhh--CCccch--h---hcCcHHHHHHHhhcCCeEEEEeccccccccCCHHHHHHHH
Confidence 99999999 69999999999999995 897766 3 3667 7889999999 7 77778
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCCcccccCCeeEEEecCCceeE-EeecCccCCCCCCcCCccHHHHHHHhcHHHHHHHhc
Q 008923 429 EPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVN-YCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYIS 507 (548)
Q Consensus 429 e~~Aeal~~lG~~~alVV~G~eG~iS~~g~T~v~el~~G~~i~-y~~~~~~~~~~~~~en~~il~~~~~LNAAaaLyv~g 507 (548)
+.|.++++.+|.++.++|++.+. +.|.. .|...+ -.. .+-+.. +...-++.++++|||++||++|
T Consensus 247 ~~~v~~~~~~G~~~~~vitd~~~---plg~~------~G~a~E~ae~-~~vL~G----~g~~~~~d~vl~nAa~~L~~aG 312 (474)
T 1uou_A 247 KTLVGVGASLGLRVAAALTAMDK---PLGRC------VGHALEVEEA-LLCMDG----AGPPDLRDLVTTLGGALLWLSG 312 (474)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSS---CSTTE------ESSHHHHHHH-HHHHTT----CSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEEecCCC---ccccc------CCCHHHHHHH-HHHHCC----CCchhHHHHHHHHHHHHHHhcC
Confidence 89999999999999999997532 11211 110100 000 000111 1111223345599999999999
Q ss_pred ccCchhhhh-----------hhhccccccccCccc
Q 008923 508 SINIVTSNL-----------VLQGCHARVSTSRSM 531 (548)
Q Consensus 508 ~a~~l~~g~-----------~~~~~~~~~~~~~~~ 531 (548)
+++++++|+ .++++...|+++..-
T Consensus 313 ~a~~~~eg~~~A~e~i~sG~A~~kl~~li~~~~g~ 347 (474)
T 1uou_A 313 HAGTQAQGAARVAAALDDGSALGRFERMLAAQGVD 347 (474)
T ss_dssp SCSSHHHHHHHHHHHHHSSHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCC
Confidence 998887665 578888888887653
No 11
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=2.8e-49 Score=420.45 Aligned_cols=283 Identities=14% Similarity=0.159 Sum_probs=226.8
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 008923 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (548)
Q Consensus 213 ~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~ 292 (548)
|+|+++|+|+.+|++||+||++++|+.|+ +|+++|.|+||||+++|+||||.+||+||++||+++..+++++.
T Consensus 2 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~~ 74 (440)
T 2tpt_A 2 FLAQEIIRKKRDGHALSDEEIRFFINGIR-------DNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKS 74 (440)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSBCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 67899999999999999999999999999 99999999999999999999999999999999999999987753
Q ss_pred ----CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHh
Q 008923 293 ----VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 367 (548)
Q Consensus 293 ----~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaL-Gi~i~lspe~a~~~Lee 367 (548)
.+.||+|||||||.+ +||+ +|+|+|++|++|+|||||++||++|+ +|+||+| |++++++++++.+++++
T Consensus 75 ~~~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnR~~ss~~Gs--aDvLEaL~Gv~~~ls~e~~~~~l~~ 148 (440)
T 2tpt_A 75 LHLNGPIVDKHSTGGVGDV---TSLM-LGPMVAACGGYIPMISGRGLGHTGGT--LDKLESIPGFDIFPDDNRFREIIKD 148 (440)
T ss_dssp TTCSSCBEEEEECCCSSCC---HHHH-HHHHHHHTTCBEEEEECCCCTTSCCH--HHHHTTSTTCCSCCCHHHHHHHHHH
T ss_pred cccCCCeeeeCCCCCCCcc---HHHH-HHHHHHhCCCcEEEECCCCCCCcccH--HHHHHhCcCCCCCCCHHHHHHHHHH
Confidence 158999999999987 7888 99999999999999999999999999 9999999 99999999999999999
Q ss_pred ccCceEEecc-cccchhhhhHHHhhcccCCCCccccchhhhhhhcc--------cCCCeEEEee------cCCCchHH--
Q 008923 368 EEIGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGF------YHEGYEEP-- 430 (548)
Q Consensus 368 ~~~GfaFL~A-p~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNP--------a~a~~qViGV------fh~~~~e~-- 430 (548)
+||+|+|| |.|||+|++++++|++| ||.+|. + ++|| .+++++|+|| |++.+.+.
T Consensus 149 --~G~~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--P---Lin~s~lskk~A~G~~alVvdVk~G~gaf~~~~de~~~ 219 (440)
T 2tpt_A 149 --VGVAIIGQTSSLAPADKRFYATRDIT--ATVDSI--P---LITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEA 219 (440)
T ss_dssp --TSEEEEECCTTBSHHHHHHHHHHHHT--TCCCCH--H---HHHHHHHHHHHTTCCSEEEEEEEESTTSSSSSHHHHHH
T ss_pred --cCEEEEcCchhhCHHHHHHHHHHHhh--CCccCh--h---hcCCHHHHHHHhcCCCeEEEEeccCCccccCCHHHHHH
Confidence 99999999 79999999999999999 897766 2 2566 7889999999 44455433
Q ss_pred ----HHHHHHHcCCCeEEEEEcCCCcccccCCeeEEEecCCcee-EEeecCccCCCCCCcCCccHHHHHHHhcHHHHHHH
Q 008923 431 ----LLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPV-NYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYY 505 (548)
Q Consensus 431 ----~Aeal~~lG~~~alVV~G~eG~iS~~g~T~v~el~~G~~i-~y~~~~~~~~~~~~~en~~il~~~~~LNAAaaLyv 505 (548)
+....+.+|.++..++++.+ .+.+.. .|... +... .+-+..+ ..+..+.++ +++|||++||+
T Consensus 220 la~t~v~~~~~~G~~~~a~itd~~---~plg~~------~G~a~E~ae~-~~vL~G~--g~~~~~~d~-vl~nAa~~L~~ 286 (440)
T 2tpt_A 220 LAEAIVGVANGAGVRTTALLTDMN---QVLASS------AGNAVEVREA-VQFLTGE--YRNPRLFDV-TMALCVEMLIS 286 (440)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECS---SCSSSC------EESHHHHHHH-HHHHHTS--CCCHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCceEEEecCCC---Cchhhc------CCCHHHHHHH-HHHHCCC--CCchHHHHH-HHHHHHHHHHh
Confidence 33344678887777777531 222211 01000 0000 0001111 001123334 45999999999
Q ss_pred hcccCchhhhh-----------hhhccccccccCcc
Q 008923 506 ISSINIVTSNL-----------VLQGCHARVSTSRS 530 (548)
Q Consensus 506 ~g~a~~l~~g~-----------~~~~~~~~~~~~~~ 530 (548)
+|+++++++|+ .++++...|+++..
T Consensus 287 ag~a~~~~eg~~~A~~~i~sG~A~~kl~~~v~~~~g 322 (440)
T 2tpt_A 287 GKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKG 322 (440)
T ss_dssp TTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCC
Confidence 99998887654 57788888887754
No 12
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=97.98 E-value=1.7e-06 Score=81.30 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=80.5
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH------HHH
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR------AMN 170 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~------~~~ 170 (548)
-.|+++||+..|....+.+...+. +|.+....|.+| |+|+|.|..+||+.+.+. ..++|+.|.+.+.+ .+.
T Consensus 47 dglil~gG~~~~~~~~~~~~~~~~-i~~~~~~~PvLGIC~G~QlL~~~~gg~v~~~-~~~~~g~~~~v~~~~~~~~~l~~ 124 (195)
T 1qdl_B 47 DRLIISPGPGTPEKREDIGVSLDV-IKYLGKRTPILGVCLGHQAIGYAFGAKIRRA-RKVFHGKISNIILVNNSPLSLYY 124 (195)
T ss_dssp SEEEECCCSSCTTSHHHHTTHHHH-HHHHTTTSCEEEETHHHHHHHHHTTCEEEEE-EEEEEEEEEEEEECCSSCCSTTT
T ss_pred CEEEECCCCCChhhhhhhhHHHHH-HHHhcCCCcEEEEehHHHHHHHHhCCEEecc-CCCcCCCceEEEECCCCHhHHHh
Confidence 468899999988866555555566 777878899999 999999999999998887 55678888632211 111
Q ss_pred hhhhHH---------hhhCCCceEEEe-C-CCCCccccCCCC----CCCCCCCCCc
Q 008923 171 TFWPLL---------MRALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDPR 211 (548)
Q Consensus 171 ~~~~~l---------~~~lp~~~~f~a-~-p~g~iMg~~~~~----g~~~~~~~~~ 211 (548)
.+...+ +..+|+.+.++| + ++|.|+++.++. |++|.|....
T Consensus 125 ~~~~~~~v~~~H~~~v~~l~~~~~vla~s~~~g~i~a~~~~~~~~~gvQfHPE~~~ 180 (195)
T 1qdl_B 125 GIAKEFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVG 180 (195)
T ss_dssp TCCSEEEEEEEEEEEEECCCTTEEEEEEESSSCCEEEEEESSSSEEEESSBTTSTT
T ss_pred cCCCceEEeccccchhhhCCCCcEEEEEECCCCcEEEEEeCCCCEEEEecCCCCCC
Confidence 111100 146888999998 6 899999999875 6788665443
No 13
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=97.76 E-value=4.5e-06 Score=92.91 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=79.2
Q ss_pred cceeeCCCCCCCCChhhhh--hhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhh
Q 008923 98 AKVCTGPTQTRPLREDEAF--KVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFW 173 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~--~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~ 173 (548)
-.|+++|||+.|-++.+-. .+.+. |+++ ...+|++| |+|||.|+.+||+.+.+. +.|.||.++. +.+++
T Consensus 488 DgIIlsGGPg~p~d~~~p~i~~~~~l-I~~a~~~~iPiLGIClG~QlLa~alGG~V~~~-~~~~~G~~~~-----i~~~~ 560 (645)
T 3r75_A 488 DVVVMGPGPGDPSDAGDPRIARLYAW-LRHLIDEGKPFMAVCLSHQILNAILGIPLVRR-EVPNQGIQVE-----IDLFG 560 (645)
T ss_dssp SEEEECCCSSCTTCTTSHHHHHHHHH-HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEE-EEEEEEEEEE-----EEETT
T ss_pred CEEEECCCCCChhhhhhhhHHHHHHH-HHHHHHCCCCEEEECHHHHHHHHHhCCEEEcC-CCcccccceE-----Eeeec
Confidence 5799999999998554211 23344 6664 56899999 999999999999999998 7788876552 22222
Q ss_pred hHHh-----------------hhCCCceEEEe-CCCCCccccCCCC--CCCCCCCCC
Q 008923 174 PLLM-----------------RALPPDVIFIA-DPEGSIMGGGGSI--GPHYSGNDP 210 (548)
Q Consensus 174 ~~l~-----------------~~lp~~~~f~a-~p~g~iMg~~~~~--g~~~~~~~~ 210 (548)
..++ ..+|+.+.+++ +++|.||+++|+. |++|.|...
T Consensus 561 ~~l~~~~~~~~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~Ai~~~~~~GVQFHPE~~ 617 (645)
T 3r75_A 561 QRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQFHAESV 617 (645)
T ss_dssp EEEEEEEEEEEEEBCSCSEEEETTTEEEEEEECTTTCBEEEEEETTEEEESSBTTST
T ss_pred CcceecCCCcEEEEEehhhccccCCCCeEEEEEcCCCcEEEEEcCCEEEEEeCCeec
Confidence 2222 24889999998 8999999999986 888876653
No 14
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=97.63 E-value=1.6e-05 Score=74.43 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=70.6
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHHHHhhhh-
Q 008923 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRAMNTFWP- 174 (548)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~~~~~~~~~- 174 (548)
++++|||+.|. +.+. ...+++.+...+|++| |+|+|.|..++|+.+.+. ..+.+|..+.-. ...+..+..
T Consensus 51 iil~gGpg~~~---~~~~-~~~l~~~~~~~~PilGIC~G~Qll~~~~Gg~v~~~-~~~~~g~~~~~~~~~~~l~~~~~~~ 125 (192)
T 1i1q_B 51 LMLSPGPGVPS---EAGC-MPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQA-GEILHGKATSIEHDGQAMFAGLANP 125 (192)
T ss_dssp EEECCCSSCGG---GSTT-HHHHHHHHBTTBCEEEETHHHHHHHHHTSCCCCC----CCSSEEEEEEECCCGGGTTSCSS
T ss_pred EEECCCCcCch---hCch-HHHHHHHHhcCCCEEEECcChHHHHHHhCCEEEeC-CCcEecceeEEecCCChHHhcCCCC
Confidence 99999999997 3333 3455777777899999 999999999999988765 345566443111 011111111
Q ss_pred -------H-HhhhCCCceEEEeCCCCCccccCCCC----CCCCCCCCC
Q 008923 175 -------L-LMRALPPDVIFIADPEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 175 -------~-l~~~lp~~~~f~a~p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
. -+..+|+.+.++|+.||.+|++.|+. |++|.|...
T Consensus 126 ~~v~~~H~~~v~~lp~~~~v~a~~~~~~~ai~~~~~~~~gvQfHPE~~ 173 (192)
T 1i1q_B 126 LPVARYHSLVGSNVPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESI 173 (192)
T ss_dssp EEEEECCC---CCCCTTCEEEEEETTEEEEEEETTTTEEEESSBTTST
T ss_pred cEEEechhhHhhhCCCccEEEECCCCcEEEEEECCCCEEEEEccCccc
Confidence 1 12468888999987789999999765 667755443
No 15
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=97.37 E-value=2.7e-05 Score=81.74 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=75.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhc-CCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhH
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPL 175 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~ 175 (548)
-.|++++||+.|. +....++. ||++.. .+|++| |+|||.|+.++||.+.|. +|+.++.+.+-. .+. .++-
T Consensus 233 DGliLsGGPgdp~---~~~~~~~~-Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~-~~gh~g~n~pv~--~~~-~g~v 304 (379)
T 1a9x_B 233 DGIFLSNGPGDPA---PCDYAITA-IQKFLETDIPVFGICLGHQLLALASGAKTVKM-KFGHHGGNHPVK--DVE-KNVV 304 (379)
T ss_dssp SEEEECCCSBCST---TCHHHHHH-HHHHTTSCCCEEEETHHHHHHHHHTTCCEEEE-EEEEEEEEEEEE--ETT-TTEE
T ss_pred CEEEEeCCCCChH---HHHHHHHH-HHHHHHcCCCEEEECchHHHHHHHhCcEEEec-ccccccCceeeE--ecC-CCcE
Confidence 3689999999987 33455666 777765 599999 999999999999999997 888776553210 000 0110
Q ss_pred H---------hh--hCCCceEEEe-C-CCCCccccCCCC----CCCCCCCCC
Q 008923 176 L---------MR--ALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 176 l---------~~--~lp~~~~f~a-~-p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
. ++ .||+.+.+++ + +||.|+|++|+. |++|.|...
T Consensus 305 ~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ieai~~~~~pi~gVQFHPE~~ 356 (379)
T 1a9x_B 305 MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEAS 356 (379)
T ss_dssp EEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEEEEESSSSEEEESSCTTCS
T ss_pred EEEecCccceEecccCCCCeEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCC
Confidence 1 12 4999998886 4 899999999865 667766544
No 16
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=97.06 E-value=0.00027 Score=65.65 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=69.3
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHH---HHHHHHhhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEG---ERRAMNTFW 173 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~---e~~~~~~~~ 173 (548)
.|+++.++ .|. +.+...+. +|.+ ....|++| |.|+|.++..+|+.+.+. ..+.+|..+.. +...+..+.
T Consensus 46 glil~Gg~-~~~---~~~~~~~~-i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~-~~~~~G~~~~~~~~~~~l~~~~~ 119 (189)
T 1wl8_A 46 GIIFSGGP-SLE---NTGNCEKV-LEHYDEFNVPILGICLGHQLIAKFFGGKVGRG-EKAEYSLVEIEIIDEXEIFKGLP 119 (189)
T ss_dssp EEEECCCS-CTT---CCTTHHHH-HHTGGGTCSCEEEETHHHHHHHHHHTCEEEEC-SCCSCEEEEEEESCC--CCTTSC
T ss_pred EEEECCCC-Chh---hhhhHHHH-HHHHhhCCCeEEEEcHHHHHHHHHhCCceecC-CCcccCceeEEEecCchHHhCCC
Confidence 46676665 554 45556666 6776 67899999 999999999999998875 45555532210 011111111
Q ss_pred hH---------HhhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCC
Q 008923 174 PL---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (548)
Q Consensus 174 ~~---------l~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~ 209 (548)
.. -+..||+.+.++| +++|.|+++.++. |++|.|..
T Consensus 120 ~~~~~~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~~~~~~~gvQfHPE~ 169 (189)
T 1wl8_A 120 KRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEV 169 (189)
T ss_dssp SEEEEEECCSEEEEECCTTEEEEEEESSCSCSEEEESSSCEEEESSCTTS
T ss_pred CceEEEEEeeeehhhCCCCcEEEEEcCCCCEEEEEeCCceEEEEecCCCc
Confidence 10 0136899999988 8899999999764 66776654
No 17
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=96.86 E-value=0.00031 Score=67.95 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=71.9
Q ss_pred hccceeeCCCCCCCCC--hhhh----hhhHHHHHHH-hhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcC----CH
Q 008923 96 AQAKVCTGPTQTRPLR--EDEA----FKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQW----SE 163 (548)
Q Consensus 96 ~~~~v~~gp~~~~P~~--~~~a----~~~~~~~l~~-~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~----s~ 163 (548)
.=-.|+++++|..|-. ++.. ....+. ||+ .....|++| |+|+|.|+..||+.+.+. ..+++|.. ++
T Consensus 45 ~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~-~~~~~G~~~v~~~~ 122 (236)
T 3l7n_A 45 DFDMLILMGGPQSPSSTKKEFPYYDAQAEVKL-IQKAAKSEKIIVGVCLGAQLMGVAYGADYLHS-PKKEIGNYLISLTE 122 (236)
T ss_dssp GCSEEEECCCSSCTTCCTTTCTTCCHHHHHHH-HHHHHHTTCEEEEETHHHHHHHHHTTCCCEEE-EEEEEEEEEEEECT
T ss_pred ccCEEEECCCCCCcccccccCcccchHHHHHH-HHHHHHcCCCEEEEchHHHHHHHHhCCEEecC-CCceeeeEEEEEcc
Confidence 3456999999999853 1211 124555 665 456899999 999999999999998887 44555432 11
Q ss_pred -HHH-HHHHhhhhH--------HhhhCCCceEEEe-CCCCCccccCCCC---CCCCCCCC
Q 008923 164 -GER-RAMNTFWPL--------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGND 209 (548)
Q Consensus 164 -~e~-~~~~~~~~~--------l~~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~~ 209 (548)
++. ..+..+... ....+|+.+.++| +++|.+++++++. |++|.|..
T Consensus 123 ~~~~~~l~~~~~~~~~v~~~H~~~~~lp~~~~vla~s~~~~~~a~~~~~~v~gvQfHPE~ 182 (236)
T 3l7n_A 123 AGKMDSYLSDFSDDLLVGHWHGDMPGLPDKAQVLAISQGCPRQIIKFGPKQYAFQCHLEF 182 (236)
T ss_dssp TGGGCGGGTTSCSEEEEEEEEEEECCCCTTCEEEEECSSCSCSEEEEETTEEEESSBSSC
T ss_pred CcccChHHhcCCCCcEEEEecCCcccCCChheEEEECCCCCEEEEEECCCEEEEEeCCCC
Confidence 101 111111111 1146888999998 8888899998753 66774433
No 18
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=96.63 E-value=0.00047 Score=65.87 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=70.2
Q ss_pred ceeeCCC-CCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH----HHHHHhh
Q 008923 99 KVCTGPT-QTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE----RRAMNTF 172 (548)
Q Consensus 99 ~v~~gp~-~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e----~~~~~~~ 172 (548)
.|+++++ ++.+.+++......+.++ ...+|.+| |+|+|.|+.+||+.+.+. ..|..|..+ -+ ...+..+
T Consensus 57 glIl~GG~p~~~~~~~~~~~l~~~~~---~~~~PiLGIC~G~Qll~~~lGg~v~~~-~~~~~G~~~-v~~~~~~~l~~~~ 131 (212)
T 2a9v_A 57 GLVLSGGAPNIDEELDKLGSVGKYID---DHNYPILGICVGAQFIALHFGASVVKA-KHPEFGKTK-VSVMHSENIFGGL 131 (212)
T ss_dssp EEEEEEECSCGGGTGGGHHHHHHHHH---HCCSCEEEETHHHHHHHHHTTCEEEEE-EEEEEEEEE-EEESCCCGGGTTC
T ss_pred EEEECCCCCCCCcccccchhHHHHHH---hCCCCEEEEChHHHHHHHHhCCEEEcC-CCcccCcee-eEECCCChhHhcC
Confidence 5777777 677765544555556532 45799999 999999999999999886 444444211 10 0111111
Q ss_pred hhHH---------hhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCC
Q 008923 173 WPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 173 ~~~l---------~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
...+ +..+|+.+.++| ++||.|+++.++. |++|.|...
T Consensus 132 ~~~~~v~~~H~~~v~~l~~~~~vlA~s~d~~i~ai~~~~~~i~gvQfHPE~~ 183 (212)
T 2a9v_A 132 PSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVE 183 (212)
T ss_dssp CSEEEEEEEEEEEEESCCTTEEEEEECSSCSCSEEEESSSSEEEESSCTTST
T ss_pred CCceEEEeEhhhhHhhCCCCcEEEEEeCCCCEEEEEECCCCEEEEEeCCCCC
Confidence 1110 146899999998 8899999999864 667766543
No 19
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=96.21 E-value=0.0016 Score=63.38 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=70.5
Q ss_pred cceeeCCCCCCCCChhhh---hhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccC-CCCCcCCHHHH----H
Q 008923 98 AKVCTGPTQTRPLREDEA---FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAF-PEATQWSEGER----R 167 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a---~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~-p~~~~~s~~e~----~ 167 (548)
-.|++++++..|.+++.. ...++. ||++ ....|.+| |+|+|.|+.+||+.+.+. .+ ++.| |.+-+. .
T Consensus 59 Dglil~GG~~~~~~~~~~~~l~~~~~~-i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~-~~g~~~G-~~~v~~~~~~~ 135 (239)
T 1o1y_A 59 SLVVLLGGYMGAYEEEKYPFLKYEFQL-IEEILKKEIPFLGICLGSQMLAKVLGASVYRG-KNGEEIG-WYFVEKVSDNK 135 (239)
T ss_dssp SEEEECCCSCCTTCTTTCTHHHHHHHH-HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEC-TTCCEEE-EEEEEECCCCG
T ss_pred CEEEECCCCccccCCccChhHHHHHHH-HHHHHHCCCCEEEEchhHHHHHHHcCCeEecC-CCCCccc-cEEEEECCCCc
Confidence 457777788777654311 123444 6666 56799999 999999999999999887 44 4333 442220 1
Q ss_pred HHHhhhhH--------HhhhCCCceEEEe-CCCCCccccCCCC--CCCCCCCC
Q 008923 168 AMNTFWPL--------LMRALPPDVIFIA-DPEGSIMGGGGSI--GPHYSGND 209 (548)
Q Consensus 168 ~~~~~~~~--------l~~~lp~~~~f~a-~p~g~iMg~~~~~--g~~~~~~~ 209 (548)
.+..+... ..-.+|+.+.++| +++|.++|++++. |++|.|..
T Consensus 136 l~~~~~~~~~~~~~H~~~v~lp~~~~vlA~s~~~~iea~~~~~i~gvQfHPE~ 188 (239)
T 1o1y_A 136 FFREFPDRLRVFQWHGDTFDLPRRATRVFTSEKYENQGFVYGKAVGLQFHIEV 188 (239)
T ss_dssp GGTTSCSEEEEEEEESEEECCCTTCEEEEECSSCSCSEEEETTEEEESSBSSC
T ss_pred hHHhCCCCceeEeecCCccccCCCCEEEEEcCCCCEEEEEECCEEEEEeCccC
Confidence 11111110 1125888888887 8888999999875 77775544
No 20
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=95.55 E-value=0.0048 Score=60.97 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=70.5
Q ss_pred ccceeeCCCCCCCCChhhh-hhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH-------H
Q 008923 97 QAKVCTGPTQTRPLREDEA-FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE-------R 166 (548)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~a-~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e-------~ 166 (548)
=-.|+++++|..|.++..- ....+. |+++ ....|++| |+|+|.|+.+|||.+.+. ..|+.| |.+-+ .
T Consensus 49 ~d~lIl~GGp~~~~d~~~~~~~~~~~-i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~-~~~e~G-~~~v~~~~~~~~~ 125 (250)
T 3m3p_A 49 CSGLAMMGGPMSANDDLPWMPTLLAL-IRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDS-PHAEIG-WVRAWPQHVPQAL 125 (250)
T ss_dssp SSEEEECCCSSCTTSCCTTHHHHHHH-HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEE-EEEEEE-EEEEEECSSHHHH
T ss_pred CCEEEECCCCCcccccchHHHHHHHH-HHHHHHcCCCEEEECHHHHHHHHHhCCEEEeC-CCCcee-eEEEEEecCCCCc
Confidence 3467888888877643111 123344 5654 56899999 999999999999999988 445544 32211 1
Q ss_pred HHHHhhhhHH--------hhhCCCceEEEe-CCCCCccccCCCC---CCCCCCCC
Q 008923 167 RAMNTFWPLL--------MRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGND 209 (548)
Q Consensus 167 ~~~~~~~~~l--------~~~lp~~~~f~a-~p~g~iMg~~~~~---g~~~~~~~ 209 (548)
..+ -+...+ .=.||+++.++| +++|.+++++++. |++|.|..
T Consensus 126 ~l~-g~~~~~~v~~~H~~~v~lp~~~~vlA~s~~~~~~a~~~~~~~~GvQfHPE~ 179 (250)
T 3m3p_A 126 EWL-GTWDELELFEWHYQTFSIPPGAVHILRSEHCANQAYVLDDLHIGFQCHIEM 179 (250)
T ss_dssp HHH-SCSSCEEEEEEEEEEECCCTTEEEEEEETTEEEEEEEETTTEEEESSCTTC
T ss_pred ccc-cCCCccEEEEEccceeecCCCCEEEEEeCCCCEEEEEECCeeEEEEeCCcC
Confidence 122 111111 015899999998 8889999998855 77885543
No 21
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=95.26 E-value=0.0033 Score=68.73 Aligned_cols=122 Identities=5% Similarity=-0.053 Sum_probs=75.7
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCC----HHHH------
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EGER------ 166 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s----~~e~------ 166 (548)
.|+++.||+.+-.++ +..+.+.+++.+. ..+|.+| |+|+|.|...||+.+.++ .-.++|..+ ++..
T Consensus 53 gIIlsGGp~s~~~~~-~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~-~~~E~G~~~l~~~~~~~~~~~p~ 130 (556)
T 3uow_A 53 GVILSGGPYSVTEAG-SPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKS-KTSEYGCTDVNILRNDNINNITY 130 (556)
T ss_dssp EEEECCCSCCTTSTT-CCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEE-EEEEEEEEEEEECCTTGGGGCSG
T ss_pred EEEECCCCCcccccC-CcchhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecC-CCcccCCcceeeccCcccccccc
Confidence 466666998887554 3344455566554 3799999 999999999999999886 223333211 1110
Q ss_pred ------------------------HHHHhhhhH-H---------hhhCCCceEEEe-CCCCCccccCCCC----CCCCCC
Q 008923 167 ------------------------RAMNTFWPL-L---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSG 207 (548)
Q Consensus 167 ------------------------~~~~~~~~~-l---------~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~ 207 (548)
..+..+++. + +..+|+.+.++| +++|.|+|+.++. |++|.|
T Consensus 131 v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHP 210 (556)
T 3uow_A 131 CRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHP 210 (556)
T ss_dssp GGGC---CCHHHHHTTSCCCC--CGGGTTCCSSEEEEEEEEEEEEEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCT
T ss_pred eecccccccccccccccccccccchhhcccccCceEEEEEccceeeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCC
Confidence 011111111 0 147899999998 8899999998854 778876
Q ss_pred CCCccCcHHHHHHHH
Q 008923 208 NDPREMRLVGALREV 222 (548)
Q Consensus 208 ~~~~~~~~~~~L~kL 222 (548)
.......-..+++..
T Consensus 211 E~~~~~~G~~ll~nF 225 (556)
T 3uow_A 211 EVYESLDGELMFYNF 225 (556)
T ss_dssp TSTTSTTHHHHHHHH
T ss_pred CCCccccchHHHHHH
Confidence 655442333444443
No 22
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=95.05 E-value=0.0066 Score=68.27 Aligned_cols=120 Identities=8% Similarity=-0.044 Sum_probs=67.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTF 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~~~~~~ 172 (548)
-.|++++||+.+.++ ++..+.+.+ +...+|++| |+|+|.|...||+.+.+. .++++| |.+-+- .++..+
T Consensus 74 dGIILsGGp~s~~~~-~~~~~~~~i---~~~g~PvLGIC~G~QlLa~~lGG~v~~~-~~~e~G-~~~v~~~~~~~Lf~~l 147 (697)
T 2vxo_A 74 RAIIISGGPNSVYAE-DAPWFDPAI---FTIGKPVLGICYGMQMMNKVFGGTVHKK-SVREDG-VFNISVDNTCSLFRGL 147 (697)
T ss_dssp SEEEEEECC--------CCCCCGGG---TTSSCCEEEEEHHHHHHHHHTTCCBCC---------CEEEEECTTSGGGTTC
T ss_pred CEEEECCCCCcccCc-cchhHHHHH---HhCCCCEEEECHHHHHHHHHhCCeEeec-CCCccc-eEEEEecCCChhhhcC
Confidence 358888888887643 344444442 235699999 999999999999999987 566666 332111 011111
Q ss_pred hhH---------HhhhCCCceEEEeCCCCCccccCCCC----CCCCCCCCCccCcHHHHHHHHh
Q 008923 173 WPL---------LMRALPPDVIFIADPEGSIMGGGGSI----GPHYSGNDPREMRLVGALREVL 223 (548)
Q Consensus 173 ~~~---------l~~~lp~~~~f~a~p~g~iMg~~~~~----g~~~~~~~~~~~~~~~~L~kL~ 223 (548)
... -+..+|+.+.++|..++.|+|+.|.. |++|.|.......-..+++..+
T Consensus 148 ~~~~~v~~~H~~~V~~lp~g~~vlA~s~~~i~ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl 211 (697)
T 2vxo_A 148 QKEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFL 211 (697)
T ss_dssp CSEEEECCCSSCCBSSCCTTCEEEEEETTEEEEEEETTTTEEEESSCTTSSSSTTHHHHHHHHH
T ss_pred CccCcceeecccceecCCCCeEEEEEeCCceEEEEeCCCCEEEEEecccCCCCccchhhhhhhh
Confidence 000 01468999999984466999999766 6688665544323344555544
No 23
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=94.68 E-value=0.0084 Score=64.91 Aligned_cols=119 Identities=9% Similarity=-0.001 Sum_probs=73.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTF 172 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~~~~~~ 172 (548)
-.|++++||+.+.+++ +..+.+.+ +...+|++| |+|+|.|...||+.+.+. ..+++|..+ -+. ..+..+
T Consensus 52 dgiILsGGp~s~~~~~-~~~~~~~~---~~~g~PvLGIC~G~Qlla~~~GG~V~~~-~~~e~G~~~-v~~~~~~~L~~~l 125 (525)
T 1gpm_A 52 SGIILSGGPESTTEEN-SPRAPQYV---FEAGVPVFGVCYGMQTMAMQLGGHVEAS-NEREFGYAQ-VEVVNDSALVRGI 125 (525)
T ss_dssp SEEEECCCSSCTTSTT-CCCCCGGG---GTSSSCEEEETHHHHHHHHHHTCEEECC-SSCEEEEEE-EEECSCCTTTTTC
T ss_pred CEEEECCcCccccccC-CcchHHHH---HHCCCCEEEEChHHHHHHHHcCCEEEeC-CCcccceEE-EEeCCCCHhhccC
Confidence 4677777888776543 32222221 234799999 999999999999999887 334444221 100 111111
Q ss_pred hh--------H---------HhhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCCccCcHHHHHHHH
Q 008923 173 WP--------L---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMRLVGALREV 222 (548)
Q Consensus 173 ~~--------~---------l~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~~~~~~~~~L~kL 222 (548)
.. . -+..||+.+.++| +++|.|+|+.|+. |++|.|.......-..+++..
T Consensus 126 ~~~~~~~~~~~~~v~~~H~~~V~~lp~g~~v~A~s~~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF 197 (525)
T 1gpm_A 126 EDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERF 197 (525)
T ss_dssp CSEECTTSCEEEEEEEEECSEEEECCTTCEEEEECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHH
T ss_pred ccccccccccceEEEEEccceeeeCCCCCEEEEECCCCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHH
Confidence 11 0 1146899999998 8899999999754 778876655432233444433
No 24
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=94.59 E-value=0.0076 Score=64.88 Aligned_cols=107 Identities=13% Similarity=0.012 Sum_probs=66.4
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH---HHHHhhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER---RAMNTFW 173 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~---~~~~~~~ 173 (548)
-.|+++.||..+.+++ +..+.+.+ +...+|++| |.|+|.|...+|+.+.+. ..++.|..+ -+. ..++.+.
T Consensus 44 dgiIlsGGp~s~~~~~-~~~~~~~~---~~~~~PvLGIC~G~Qlla~~~GG~v~~~-~~~e~G~~~-v~~~~~~l~~~~~ 117 (503)
T 2ywb_A 44 QALILSGGPRSVFDPD-APRPDPRL---FSSGLPLLGICYGMQLLAQELGGRVERA-GRAEYGKAL-LTRHEGPLFRGLE 117 (503)
T ss_dssp SEEEECCCSSCSSCTT-CCCCCGGG---GCSSCCEEEETHHHHHHHHTTTCEEECC----CEEEEE-CSEECSGGGTTCC
T ss_pred CEEEECCCCchhccCC-CcchHHHH---HhCCCCEEEECHHHHHHHHHhCCeEeeC-CCCccceEE-EEecCcHHhhcCC
Confidence 3577777887776543 32222221 235799999 999999999999999887 334444221 111 0111111
Q ss_pred hHH---------hhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCC
Q 008923 174 PLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 174 ~~l---------~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
... +..+|+.+.++| ++++.|+++.|+. |++|.|...
T Consensus 118 ~~~~v~~~H~~~v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~gvQFHPE~~ 168 (503)
T 2ywb_A 118 GEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVA 168 (503)
T ss_dssp SCCEEEEECSCEEEECCTTCEEEEECSSCSCSEEECTTSSEEEESBCTTST
T ss_pred CccEEEEECCCccccCCCCCEEEEEECCCCEEEEEeCCCCEEEEecCCCcc
Confidence 000 146899999998 8899999998855 667766543
No 25
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=94.08 E-value=0.055 Score=53.69 Aligned_cols=52 Identities=6% Similarity=-0.167 Sum_probs=38.1
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhh
Q 008923 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTI 150 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~ 150 (548)
++.--.|++++|++.|. ..+ .++. ++++. ..+|.+| |+|+|.|..+||+.+.
T Consensus 65 ~~~~dgiil~GG~~~~~---~~~-~~~~-i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~ 118 (273)
T 2w7t_A 65 LLGCDGIFVPGGFGNRG---VDG-KCAA-AQVARMNNIPYFGVXLGMQVAVIELSRNVV 118 (273)
T ss_dssp HHTCSEEEECCCCTTTT---HHH-HHHH-HHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred HhhCCEEEecCCCCCcC---chh-HHHH-HHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence 33334677777876654 333 4455 67764 6899999 9999999999999986
No 26
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=93.83 E-value=0.035 Score=60.90 Aligned_cols=50 Identities=6% Similarity=-0.143 Sum_probs=39.2
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhcc
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (548)
-.|++++|++.|- ..+ .++. +++++ ..+|.+| |+|+|.+.-.||+.+.+.
T Consensus 345 DGIilsGGpg~~~---~~g-~~~~-i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l 396 (545)
T 1s1m_A 345 DAILVPGGFGYRG---VEG-MITT-ARFARENNIPYLGICLGMQVALIDYARHVANM 396 (545)
T ss_dssp SEEEECCCCSSTT---HHH-HHHH-HHHHHHTTCCEEEETHHHHHHHHHHHHHHHCC
T ss_pred CEEEECCCCCCcc---chh-hHHH-HHHHHHCCCcEEEECChHHHHHHHhCCceecC
Confidence 4588888988875 333 2355 77776 5799999 999999999999999853
No 27
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=93.48 E-value=0.041 Score=55.14 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=67.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhh---cccc--CC------------CC
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTI---RANA--FP------------EA 158 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~---r~~~--~p------------~~ 158 (548)
-.|+++++++.+. .. ..++. ++++ ...+|++| |+|+|.|+.+||+.+. +++. |. .|
T Consensus 92 dgiil~GG~~~~~---~~-~~~~~-i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h 166 (289)
T 2v4u_A 92 DGILVPGGFGIRG---TL-GKLQA-ISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEH 166 (289)
T ss_dssp SEEEECSCCSSTT---HH-HHHHH-HHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBC
T ss_pred CEEEecCCCCchh---HH-HHHHH-HHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhh
Confidence 4577766766543 22 34555 6766 45799999 9999999999999986 3321 31 23
Q ss_pred Cc----------CCH-----HHHHHHHhhhh----------------HHhhhCC-CceEEEe-CCCCC-ccccCCCC---
Q 008923 159 TQ----------WSE-----GERRAMNTFWP----------------LLMRALP-PDVIFIA-DPEGS-IMGGGGSI--- 201 (548)
Q Consensus 159 ~~----------~s~-----~e~~~~~~~~~----------------~l~~~lp-~~~~f~a-~p~g~-iMg~~~~~--- 201 (548)
.+ |.+ ..-.+...++. ..+..|| +.+.++| ++||. ||++.++.
T Consensus 167 ~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~ 246 (289)
T 2v4u_A 167 NPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPY 246 (289)
T ss_dssp CTTCSSCBCEEEEEEEEESCSCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSC
T ss_pred cccccCCccccceEEEEEecCCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCe
Confidence 22 010 01111122222 3345788 8999998 89998 99999874
Q ss_pred --CCCCCCCC
Q 008923 202 --GPHYSGND 209 (548)
Q Consensus 202 --g~~~~~~~ 209 (548)
|++|.|..
T Consensus 247 ~lGvQfHPE~ 256 (289)
T 2v4u_A 247 FVGVQFHPEF 256 (289)
T ss_dssp EEEESSBGGG
T ss_pred EEEEECCCCC
Confidence 66775543
No 28
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=93.41 E-value=0.012 Score=56.54 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=59.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhhh
Q 008923 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTFW 173 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~~~~~~~ 173 (548)
.|+++.++..|-+++ +....+.++ ....|++| |+|+|.|+.+||+.+.|. ..+++| |.+-+. .+.+.++
T Consensus 70 glil~Gg~~~~~~~~-~~~~~~~~~---~~~~PilGIC~G~Qll~~~~GG~v~~~-~~~~~G-~~~v~~~~~~~l~~~l~ 143 (218)
T 2vpi_A 70 AIIISGGPNSVYAED-APWFDPAIF---TIGKPVLGICYGMQMMNKVFGGTVHKK-SVREDG-VFNISVDNTCSLFRGLQ 143 (218)
T ss_dssp EEEEEC----------CCCCCGGGG---TSSCCEEEETHHHHHHHHHTTCCEEEE-EECSCE-EEEEEECTTSGGGTTCC
T ss_pred EEEECCCCccccccc-chhHHHHHH---HcCCCEEEEcHHHHHHHHHhCCceEeC-CCCccc-EEEEEEccCChhHhcCC
Confidence 477777777665332 222222212 34699999 999999999999999886 555544 321111 1111111
Q ss_pred hH---------HhhhCCCceEEEeCCCCCccccCCCC----CCCCCCCCC
Q 008923 174 PL---------LMRALPPDVIFIADPEGSIMGGGGSI----GPHYSGNDP 210 (548)
Q Consensus 174 ~~---------l~~~lp~~~~f~a~p~g~iMg~~~~~----g~~~~~~~~ 210 (548)
.. -+..||+.+.++|..||.|+++.++. |++|.|...
T Consensus 144 ~~~~v~~~H~~~v~~l~~~~~vlA~s~~~i~ai~~~~~~i~gvQfHPE~~ 193 (218)
T 2vpi_A 144 KEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESKKLYGAQFHPEVG 193 (218)
T ss_dssp SEEEEEECSEEEESSCCTTCEEEEEETTEEEEEEETTTTEEEESSCTTST
T ss_pred CCcEEeehhhhHhhhcCCCCEEEEEcCCeEEEEEECCCCEEEEEcCCCCC
Confidence 11 01468888999883378999998654 667766544
No 29
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=92.90 E-value=0.011 Score=64.20 Aligned_cols=109 Identities=9% Similarity=-0.013 Sum_probs=63.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH---HHHHHHHhhh
Q 008923 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE---GERRAMNTFW 173 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~---~e~~~~~~~~ 173 (548)
-.|+++.||..+-.+ .+..+.+.+ +...+|++| |+|+|.|...||+.+.+. ..++.|..+- .+...+..++
T Consensus 55 dgIILsGGp~sv~~~-~~~~~~~~~---~~~~~PvLGIC~G~Qlla~~lGG~V~~~-~~~e~G~~~v~~~~~~~l~~~l~ 129 (527)
T 3tqi_A 55 HGIILSGGPETVTLS-HTLRAPAFI---FEIGCPVLGICYGMQTMAYQLGGKVNRT-AKAEFGHAQLRVLNPAFLFDGIE 129 (527)
T ss_dssp SEEEECCCCC----------CCCST---TTSSSCEEEETHHHHHHHHHSSSCBC------CEEEEEEEESSCTTTTSSCC
T ss_pred CEEEECCcCcccccC-CChhhHHHH---HhcCCCEEEEChHHHHHHHHcCCeEEeC-CCccccceEEEEcCCChhhcCCc
Confidence 368888888877633 333333321 345799999 999999999999999887 4444443210 0001111111
Q ss_pred h--------H---------HhhhCCCceEEEe-CCCCCccccCCCC----CCCCCCCCCc
Q 008923 174 P--------L---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPR 211 (548)
Q Consensus 174 ~--------~---------l~~~lp~~~~f~a-~p~g~iMg~~~~~----g~~~~~~~~~ 211 (548)
. . -+..||+.+.++| ++++.|+++.++. |++|.|....
T Consensus 130 ~~~~~~~~~~~~v~~~H~d~v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~GvQFHPE~~~ 189 (527)
T 3tqi_A 130 DQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTH 189 (527)
T ss_dssp SBCCTTSCCEEEEEEESSSCBCSCCTTCEEEEEETTEEEEEEECSSSCEEEESBCSSSTT
T ss_pred cccccccccceEEEEEcccchhccCCCCEEEEEeCCCcEEEEEcCCCCEEEEEecccccc
Confidence 1 0 1257899999998 8899999998755 6788666554
No 30
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=91.68 E-value=0.016 Score=58.86 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=41.4
Q ss_pred hhhccceeeCCCCCCCCCh---hhhhhhHHHHHHHh-hc-CCCccc-cccHHHHhHHHHhhhhccccCCCCC
Q 008923 94 LEAQAKVCTGPTQTRPLRE---DEAFKVLDTILRSA-KG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEAT 159 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~---~~a~~~~~~~l~~~-~~-~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~ 159 (548)
++.=-.|++..+++.+-+. +.....++.+++.. .| .+|++| |+|+|.|..++|+.+.+. .++.++
T Consensus 84 l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~-~~~~~g 154 (315)
T 1l9x_A 84 FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLT-ATDTVD 154 (315)
T ss_dssp HHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCE-EEEEEE
T ss_pred HhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccc-cccccC
Confidence 3333467776666665321 12234566644333 23 599999 999999999999987665 455444
No 31
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=91.01 E-value=0.12 Score=50.48 Aligned_cols=91 Identities=11% Similarity=0.022 Sum_probs=57.9
Q ss_pred hHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccc-----cCCCCCc-------CCHHHH----HHHHhhhhHH---
Q 008923 118 VLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRAN-----AFPEATQ-------WSEGER----RAMNTFWPLL--- 176 (548)
Q Consensus 118 ~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~-----~~p~~~~-------~s~~e~----~~~~~~~~~l--- 176 (548)
.++. ||++. ..+|++| |+|+|.|.-.||+.+.+.- ..+.|.+ |.+-+. .+...++..+
T Consensus 97 ~~~l-ir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~s~l~~~~~~~~~v~ 175 (254)
T 3fij_A 97 EIAL-VRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVN 175 (254)
T ss_dssp HHHH-HHHHHHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTTSSGGGTCCTTEEEC
T ss_pred HHHH-HHHHHHcCCCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCCChHHHhcCCcEEEE
Confidence 3455 67764 5899999 9999999999999987641 1122221 221110 1111112211
Q ss_pred ------hhhCCCceEEEe-CCCCCccccCCC-C-----CCCCCCCC
Q 008923 177 ------MRALPPDVIFIA-DPEGSIMGGGGS-I-----GPHYSGND 209 (548)
Q Consensus 177 ------~~~lp~~~~f~a-~p~g~iMg~~~~-~-----g~~~~~~~ 209 (548)
++.||+.+.++| ++||.|+|+.++ . |++|.|..
T Consensus 176 ~~H~~~v~~l~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~ 221 (254)
T 3fij_A 176 SLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPEL 221 (254)
T ss_dssp CBCSCEESSCCSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGG
T ss_pred EeccchhhccCCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCcc
Confidence 146899999998 889999999988 4 55775443
No 32
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=88.23 E-value=0.029 Score=52.58 Aligned_cols=55 Identities=22% Similarity=0.136 Sum_probs=34.2
Q ss_pred hhhhccceeeCCCCCCCCChhhhhhhHHH---HHHHhhcCCCccc-cccHHHHhHHHHhhhhcc
Q 008923 93 LLEAQAKVCTGPTQTRPLREDEAFKVLDT---ILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 93 ~~~~~~~v~~gp~~~~P~~~~~a~~~~~~---~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~ 152 (548)
+.++. .|++ ||++.|- ++...++. |-.-.....|++| |+|+|.|...+|+.+.++
T Consensus 38 l~~~D-~lil-PG~g~~~---~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~ 96 (211)
T 4gud_A 38 VLAAD-KLFL-PGVGTAS---EAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKA 96 (211)
T ss_dssp HHHCS-EEEE-CCCSCHH---HHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----
T ss_pred HhCCC-EEEE-CCCCCHH---HHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCccccc
Confidence 33444 3545 8887775 55555442 2222345789999 999999999999877664
No 33
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=80.22 E-value=1.3 Score=48.63 Aligned_cols=54 Identities=6% Similarity=-0.175 Sum_probs=41.9
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhcc
Q 008923 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (548)
|+.--.|++++|++.|. ..++ +++ +++++ ..+|.+| |+|+|.+...||+.+.+.
T Consensus 353 L~~~DGIILpGGfGd~~---~~g~-i~~-ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l 408 (550)
T 1vco_A 353 FRDVSGILVPGGFGVRG---IEGK-VRA-AQYARERKIPYLGICLGLQIAVIEFARNVAGL 408 (550)
T ss_dssp TTTCSCEEECCCCSSTT---HHHH-HHH-HHHHHHTTCCEEEETHHHHHHHHHHHHHTSCC
T ss_pred HhcCCEEEECCCCCCcc---hhhh-HHH-HHHHHHCCCcEEEECcCHHHHHHHhCcccccC
Confidence 43334688888988885 3443 455 78886 6899999 999999999999998864
No 34
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=59.23 E-value=10 Score=38.82 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhCCC---
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPP--- 182 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~lp~--- 182 (548)
.+++|+.|||..+++.|+. |.++..|+|||+-|+-+|+ . |.+|.+.+..--......++.
T Consensus 9 ~g~~Lt~eEa~~~~~~i~~---------g~~~~~QiaAfL~alr~kg---e-----t~~Eiag~~~am~~~~~~~~~~~~ 71 (329)
T 2elc_A 9 LGEVLEEEEAYEVMRALMA---------GEVSPVRAAGLLVALSLRG---E-----RPHEIAAMARAMREAARPLRVHRR 71 (329)
T ss_dssp TTCCCCHHHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHHHSCCCCCCCS
T ss_pred cCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCCCCCCCC
Confidence 3589999998888888662 4677889999999999999 5 777766544322211122221
Q ss_pred ceEEEeCCCCCccccCCCC--------------CCCC--CCCCC--ccCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 008923 183 DVIFIADPEGSIMGGGGSI--------------GPHY--SGNDP--REMRLVGALREVLAGGHLGYEEVQGVLRDV 240 (548)
Q Consensus 183 ~~~f~a~p~g~iMg~~~~~--------------g~~~--~~~~~--~~~~~~~~L~kL~~G~~LS~eEA~~am~~I 240 (548)
++.=+++.-|| +.++ |+.- .+++- ...--.+.|+.+.-.-+++.+|+++.++..
T Consensus 72 ~~vD~~gTGGd----g~~tfNiSt~~a~v~Aa~Gv~V~kHGnr~~ss~~GsaDvLeaLG~~~~~~~~~~~~~l~~~ 143 (329)
T 2elc_A 72 PLLDIVGTGGD----GKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGEAIEEL 143 (329)
T ss_dssp SEEEEEECCCC----SSCCCCCHHHHHHHHHHTTCEEEEEECCCTTTTCSHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred CeeEEcCCCCC----CCCccccHHHHHHHHHhCCCCEEEeCCCCCCCcccHHHHHHhCCCCCCCCHHHHHHHHHHC
Confidence 22212222222 1121 1100 01111 111246778887555678888888888875
No 35
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=59.11 E-value=2 Score=39.77 Aligned_cols=94 Identities=11% Similarity=-0.023 Sum_probs=54.2
Q ss_pred hhHHHHHHHh-hcCCCccc-cccHHHHhHH--HHhhhhccccCCCCCcCCHHHHH-----HHHhhhh--H-Hh---h---
Q 008923 117 KVLDTILRSA-KGDLKDEE-EVSKAQLGAF--FSAMTIRANAFPEATQWSEGERR-----AMNTFWP--L-LM---R--- 178 (548)
Q Consensus 117 ~~~~~~l~~~-~~~l~~~~-~~~~~q~gaf--fga~~~r~~~~p~~~~~s~~e~~-----~~~~~~~--~-l~---~--- 178 (548)
..++. |+++ ....|++| |.|+|.|+.+ +++.+.+....+.|..|.+-+.. ..+.++. . .+ .
T Consensus 67 ~~~~~-l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~~~~~l~~~~~~~~~~~~~~~H~~~ 145 (213)
T 3d54_D 67 KIAFE-IAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFG 145 (213)
T ss_dssp TTHHH-HHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECCCSSTTSTTSCTTCEEEEECCBSSC
T ss_pred HHHHH-HHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCCCCCceeeccCCCCEEEEEeecCce
Confidence 34555 5555 46789999 9999999999 88887765211225666532211 1111111 0 11 1
Q ss_pred --hC-CCceEEEe-CCC--C---CccccCCCC----CCCCCCCCCc
Q 008923 179 --AL-PPDVIFIA-DPE--G---SIMGGGGSI----GPHYSGNDPR 211 (548)
Q Consensus 179 --~l-p~~~~f~a-~p~--g---~iMg~~~~~----g~~~~~~~~~ 211 (548)
.+ |+.+.++| +++ | .|+|+.++. |++|.|....
T Consensus 146 s~~~~~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~ 191 (213)
T 3d54_D 146 RYVKIDDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAV 191 (213)
T ss_dssp EEECSSCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTT
T ss_pred EEEecCCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhc
Confidence 12 45556665 434 6 799987743 6688665544
No 36
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=58.08 E-value=9.5 Score=39.81 Aligned_cols=114 Identities=25% Similarity=0.296 Sum_probs=67.6
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhh-----hC
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMR-----AL 180 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~-----~l 180 (548)
.++.|+.|||..+++.|+. |.++..|+|||+-|+-+|+ . |.+|-+.+..--..... ..
T Consensus 35 ~g~~Ls~eEa~~~~~~i~~---------G~~~~~QiaAfL~Alr~kG---e-----t~eEi~g~~~am~~~~~~v~~~~~ 97 (377)
T 3r88_A 35 DNRDLARGQAAWAMDQIMT---------GNARPAQIAAFAVAMTMKA---P-----TADEVGELAGVMLSHAHPLPADTV 97 (377)
T ss_dssp TTCCCCTTHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHHHSCCCCTTCS
T ss_pred CCCCCCHHHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHhC---c-----CHHHHHHHHHHHHHhCCcCCCccC
Confidence 4689999998888887553 3667789999999999999 6 77776654433222222 23
Q ss_pred CCceEEEeCCCCCccccCCCC--------------CCCC--CCCCCc--cCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 008923 181 PPDVIFIADPEGSIMGGGGSI--------------GPHY--SGNDPR--EMRLVGALREVLAGGHLGYEEVQGVLRDV 240 (548)
Q Consensus 181 p~~~~f~a~p~g~iMg~~~~~--------------g~~~--~~~~~~--~~~~~~~L~kL~~G~~LS~eEA~~am~~I 240 (548)
|.++.-++..-|+ +.++ |+.- .+++-. ..--.+.|+.|+-.-+|+.+|+++.++..
T Consensus 98 ~~~~vD~~gTGGd----g~~T~niSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~~~l~~e~~~~~l~~~ 171 (377)
T 3r88_A 98 PDDAVDVVGTGGD----GVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEV 171 (377)
T ss_dssp CTTCEEEEECCCC----SCCBCCHHHHHHHHHHHTTCCEEEEECCCSSSSCCHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred CCCCeEEeCCCCC----CcCccccHHHHHHHHHhcCCeEEeECCCCCCCcccHHHHHHHcCCCcccchHHHHHHHHHh
Confidence 3333333322211 1111 2200 011111 11245678888555688999999998876
No 37
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=58.00 E-value=10 Score=39.01 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=38.6
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHh
Q 008923 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNT 171 (548)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~ 171 (548)
+++|+.|||..+++.|+. |.++..|+|||.-|+-+|+ . |.+|-+.+..
T Consensus 13 g~~Lt~eEa~~~~~~i~~---------g~~~~~QiaAfL~alr~kg---e-----t~eEiag~~~ 60 (345)
T 1o17_A 13 KSDLEINEAEELAKAIIR---------GEVPEILVSAILVALRMKG---E-----SKNEIVGFAR 60 (345)
T ss_dssp TCCCCHHHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHH
Confidence 589999998888888663 4677789999999999999 5 7777665443
No 38
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=56.97 E-value=12 Score=38.54 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=38.6
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHh
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNT 171 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~ 171 (548)
.+|.|+.|||..+++.|+. |.++..|+|||+-|+-+|+ . |.+|-+.+..
T Consensus 15 ~~~~Lt~eEa~~~~~~il~---------G~~~d~QiaAfL~alr~kg---e-----t~eEi~g~~~ 63 (346)
T 4hkm_A 15 EHREIFHDEMVDLMRQIMR---------GEVSDAMVSAILTGLRVKK---E-----TIGEIAGAAT 63 (346)
T ss_dssp TTCCCCHHHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHC---c-----CHHHHHHHHH
Confidence 4689999998888888652 3667789999999999999 5 7777665443
No 39
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=54.00 E-value=54 Score=28.77 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=52.4
Q ss_pred CccCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCC-CCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhC
Q 008923 210 PREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNK-APGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (548)
Q Consensus 210 ~~~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~-~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~ 285 (548)
-+..+...+|.-|.+ .||.+|..++...++. +.. +..++...|+.+...+.-.-.|++||.-.+.-+...-
T Consensus 28 VP~~Dy~PLlALL~R--~Ltddev~~Va~~L~~---~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~G 99 (107)
T 3ol3_A 28 VPPKDYFALLALLKR--SLTEDEVVRAAQAILR---STDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASVG 99 (107)
T ss_dssp BCGGGHHHHHHHHTC--CCCHHHHHHHHHHHHH---HCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTT
T ss_pred CCCCccHHHHHHhcc--cCCHHHHHHHHHHHHh---ccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhcC
Confidence 344555666654433 5999999999999982 111 1238999999999999999999999988776665443
No 40
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=53.99 E-value=1.7e+02 Score=28.81 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=88.8
Q ss_pred cHHHHHHHHhcCCCCCHHHHH----HHHHHhccCccCCCCCCCCHHHHHHHHHHhhhc--------CCCHHH--HHHHHH
Q 008923 214 RLVGALREVLAGGHLGYEEVQ----GVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETDRE--LKAYCL 279 (548)
Q Consensus 214 ~~~~~L~kL~~G~~LS~eEA~----~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~K--------GET~eE--IaGfa~ 279 (548)
.+...++++.....++.+... ++-+.++ ..++...-.-.|+-.++-+ +.++.+ +....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-------~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (297)
T 1j8m_F 6 NLRDTVRKFLTGSSSYDKAVEDFIKELQKSLI-------SADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYD 78 (297)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHH
Confidence 467788999888889985544 4445566 6788888888888877653 234433 233444
Q ss_pred HHHhhCCC-----CCCC-CCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHH----HHHh
Q 008923 280 AFDDELGP-----PPVA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQ----MLKF 349 (548)
Q Consensus 280 Amr~~~~~-----i~~~-~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~AD----vLEa 349 (548)
.+...... +... ....+-++|.+|.|++|+-.. .|..++..|-+|..-+.+-..+ ++ .+ ..+.
T Consensus 79 ~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~---la~~~~~~g~~v~l~~~D~~r~--~a--~~ql~~~~~~ 151 (297)
T 1j8m_F 79 ELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGK---LAYFYKKKGFKVGLVGADVYRP--AA--LEQLQQLGQQ 151 (297)
T ss_dssp HHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHH---HHHHHHHTTCCEEEEECCCSSS--HH--HHHHHHHHHH
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHH---HHHHHHHCCCeEEEEecCCCCH--HH--HHHHHHHhcc
Confidence 55444432 1111 123566789999999864332 2333456688998877664322 22 22 2344
Q ss_pred CCCCC-----CCCHHHH-HHHHHh---ccCceEEecccccch
Q 008923 350 MGAST-----NLSVLQA-KELLED---EEIGFAYVSLREARP 382 (548)
Q Consensus 350 LGi~i-----~lspe~a-~~~Lee---~~~GfaFL~Ap~~hP 382 (548)
.|+++ ..+|.++ .+.+++ .+.-+.+++.|-.+.
T Consensus 152 ~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 152 IGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 56653 2345443 223332 225677887764443
No 41
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=53.94 E-value=14 Score=38.59 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=37.7
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHH
Q 008923 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMN 170 (548)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~ 170 (548)
+++|+.|||..+++.|+. |.++..|+|||+-|+-+|+ . |.+|-+.+.
T Consensus 37 G~~Lt~eEa~~~~~~il~---------G~~~~~QiaAfL~Alr~kG---e-----t~eEiag~~ 83 (374)
T 1vqu_A 37 GESLSRSQAAELMQGWLS---------EAVPPELSGAILTALNFKG---V-----SADELTGMA 83 (374)
T ss_dssp TCCCCHHHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHH
Confidence 499999998888888652 4677789999999999999 5 777765444
No 42
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=53.14 E-value=12 Score=38.45 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=37.9
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHh
Q 008923 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNT 171 (548)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~ 171 (548)
+++|+.|||..+++.|+. |.++..|+|||+-|+-+|+ . |.+|-+.+..
T Consensus 23 g~~Lt~eEa~~~~~~il~---------g~~~~~QiaAfL~alr~kg---e-----t~eEiag~~~ 70 (345)
T 1khd_A 23 SQSMTQEESHQLFAAIVR---------GELEDSQLAAALISMKMRG---E-----RPEEIAGAAS 70 (345)
T ss_dssp TCCCCHHHHHHHHHHHTT---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHH
Confidence 489999998888877552 4777889999999999999 5 7777665443
No 43
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=50.03 E-value=3.1 Score=38.48 Aligned_cols=52 Identities=13% Similarity=-0.083 Sum_probs=34.0
Q ss_pred ceeeCCCCCCCCChhh---hhhhHHHHHHHh-hcCCCccc-cccHHHHhHH---HH---------hhhhcc
Q 008923 99 KVCTGPTQTRPLREDE---AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF---FS---------AMTIRA 152 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~---a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaf---fg---------a~~~r~ 152 (548)
.|++ ||++.|.+.-. .....+. ||++ ...+|++| |.|+|.|+.. || +.+.+.
T Consensus 43 ~lil-~G~g~~~~~~~~l~~~~~~~~-i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~ 111 (200)
T 1ka9_H 43 LLVL-PGQGHFGQVMRAFQESGFVER-VRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRF 111 (200)
T ss_dssp EEEE-CCCSCHHHHHHTTSSSCTHHH-HHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEEC
T ss_pred EEEE-CCCCcHHHHHHHHHhcCHHHH-HHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEEC
Confidence 3555 77666541100 0224555 6654 56799999 9999999999 78 666655
No 44
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=48.62 E-value=14 Score=40.63 Aligned_cols=53 Identities=8% Similarity=-0.099 Sum_probs=39.1
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhc
Q 008923 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIR 151 (548)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r 151 (548)
|+.--.|++.++++.|- ..+ .++. +|.++ ..+|.+| |+|+|.+...||+.+.+
T Consensus 348 L~~~DgIIlpGG~G~~~---~~g-~i~~-ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g 402 (535)
T 3nva_A 348 LGNVNGIIVLPGFGSRG---AEG-KIKA-IKYAREHNIPFLGICFGFQLSIVEFARDVLG 402 (535)
T ss_dssp TTSCSEEEECCCCSSTT---HHH-HHHH-HHHHHHHTCCEEEETHHHHHHHHHHHHTTTC
T ss_pred ccCCCEEEECCCCCCcc---HHH-HHHH-HHHHHHcCCcEEEECcchhHHHHHhhccccC
Confidence 34344567777877764 333 3566 67775 5899999 99999999999999953
No 45
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=46.79 E-value=4.1 Score=37.10 Aligned_cols=107 Identities=9% Similarity=0.079 Sum_probs=61.8
Q ss_pred ccceeeCCCCCCCCChhh-hhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---H-----
Q 008923 97 QAKVCTGPTQTRPLREDE-AFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---R----- 166 (548)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~-a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~----- 166 (548)
--.|++++++..+.++.. ....++. ++ ...+|++| |.|+|.|+..+|+.+-.-..+ +++.+... +
T Consensus 38 ~dglil~GG~~~~~~~~~~~~~~~~~-i~--~~~~PilGIC~G~Qll~~~~gg~~~~lg~~--~~~~~~~~~~~~~~~~~ 112 (186)
T 2ywj_A 38 IDALIIPGGESTAIGKLMKKYGLLEK-IK--NSNLPILGTCAGMVLLSKGTGINQILLELM--DITVKRNAYGRQVDSFE 112 (186)
T ss_dssp CSEEEECCSCHHHHHHHHHHTTHHHH-HH--TCCCCEEEETHHHHHHSSCCSSCCCCCCCS--SEEEETTTTCSSSCCEE
T ss_pred CCEEEECCCCchhhhhhhhccCHHHH-HH--hcCCcEEEECHHHHHHHHHhCCCcCccCCC--ceeEEeccCCCccccee
Confidence 356888888765542211 1124455 55 56799999 999999999999874211111 11111000 0
Q ss_pred -----HHHHhh----hhH-HhhhC-CCceEEEeCCCCCccccCCCC--CCCCCCC
Q 008923 167 -----RAMNTF----WPL-LMRAL-PPDVIFIADPEGSIMGGGGSI--GPHYSGN 208 (548)
Q Consensus 167 -----~~~~~~----~~~-l~~~l-p~~~~f~a~p~g~iMg~~~~~--g~~~~~~ 208 (548)
..+..+ +-. .++.+ |+.+.++|..||.++|++++. |++|.|.
T Consensus 113 ~~~~~~~~~~~~~~~~H~~~v~~l~~~~~~v~a~sd~~~~a~~~~~~~gvQfHPE 167 (186)
T 2ywj_A 113 KEIEFKDLGKVYGVFIRAPVVDKILSDDVEVIARDGDKIVGVKQGKYMALSFHPE 167 (186)
T ss_dssp EEEEETTTEEEEEEESSCCEEEEECCTTCEEEEEETTEEEEEEETTEEEESSCGG
T ss_pred cccccccCCcEEEEEEecceeeecCCCCeEEEEEECCEEEEEeeCCEEEEECCCC
Confidence 000000 000 11467 889999983389999999875 7788554
No 46
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=44.33 E-value=24 Score=31.25 Aligned_cols=67 Identities=9% Similarity=0.049 Sum_probs=51.8
Q ss_pred ccCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhC
Q 008923 211 REMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (548)
Q Consensus 211 ~~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~ 285 (548)
++.+...+|.- +. +.||.||..++...++. +|.+++..|+++..-+.-.-.++++|.-...-+...-
T Consensus 26 P~~Dy~PLLAL-L~-r~Ltdeev~~Va~~L~~------~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~G 92 (112)
T 2lky_A 26 PGPDRVPLLAL-LT-RRLTNDEIKAIAEDLEK------RAHFDHIDIGVLITQMTDEMPREEDIERVRRHLALQG 92 (112)
T ss_dssp CHHHHHHHHHH-HT-TTCCHHHHHHHHHHHHH------HCCCSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHTTC
T ss_pred CCcchHHHHHH-Hc-ccCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 33334444443 33 78999999999999983 6789999999999999999999999988777766544
No 47
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=44.22 E-value=24 Score=37.64 Aligned_cols=195 Identities=12% Similarity=0.062 Sum_probs=97.9
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhC--CC-
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL--PP- 182 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~l--p~- 182 (548)
.+++|+.||+.-+++.|+. |.++..|+|||+-|+-+|+ . |.+|.+.+..--......+ |.
T Consensus 13 ~g~~Lt~eEa~~~~~~i~~---------G~~sd~QiaAfL~Alr~kG---e-----t~eEiag~~~Am~~~~~~~~~~~~ 75 (440)
T 2tpt_A 13 DGHALSDEEIRFFINGIRD---------NTISEGQIAALAMTIFFHD---M-----TMPERVSLTMAMRDSGTVLDWKSL 75 (440)
T ss_dssp TTCCCCHHHHHHHHHHHHH---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHHTSBCCCCTTT
T ss_pred cCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcCCCccc
Confidence 4588999998888888653 4667789999999999999 5 7777665443222111122 21
Q ss_pred ----ceEEEeCCCCCccccCCCC-----------CCCC--CCCCC--ccCcHHHHHHHH-hcCCCCCHHHHHHHHHHhcc
Q 008923 183 ----DVIFIADPEGSIMGGGGSI-----------GPHY--SGNDP--REMRLVGALREV-LAGGHLGYEEVQGVLRDVLP 242 (548)
Q Consensus 183 ----~~~f~a~p~g~iMg~~~~~-----------g~~~--~~~~~--~~~~~~~~L~kL-~~G~~LS~eEA~~am~~IL~ 242 (548)
++.=+++.-|+ +.++ |+.- .+++- ...--.+.|+.| .-.-+++.+|+.+.++..=
T Consensus 76 ~~~~~~vD~~gTGGd----G~~iSt~~A~vvAa~Gv~VaKHGnR~~ss~~GsaDvLEaL~Gv~~~ls~e~~~~~l~~~G- 150 (440)
T 2tpt_A 76 HLNGPIVDKHSTGGV----GDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVG- 150 (440)
T ss_dssp TCSSCBEEEEECCCS----SCCHHHHHHHHHHHTTCBEEEEECCCCTTSCCHHHHHTTSTTCCSCCCHHHHHHHHHHTS-
T ss_pred ccCCCeeeeCCCCCC----CccHHHHHHHHHHhCCCcEEEECCCCCCCcccHHHHHHhCcCCCCCCCHHHHHHHHHHcC-
Confidence 22222322222 2223 2210 01110 111145677777 6667899999999998752
Q ss_pred CccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHH--HHhhCCCCCCCCCCCeeE-EcCCC--CCCCccccchHHHH
Q 008923 243 LQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLA--FDDELGPPPVADVKSLTH-YGEPY--DGNTRFFRSTLFVA 317 (548)
Q Consensus 243 ~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~A--mr~~~~~i~~~~~~~vDi-~GTGG--DG~~tfNiST~laA 317 (548)
+-+-.-.....|+-. .+.++|-.=-|..-+ -++.+ |-+.+.. .. +.-++|+ +|.|. +|..........-.
T Consensus 151 ~~fl~a~~~~hPA~k--~l~~lR~~lrTvfNi-PLin~s~lskk~A~-G~-~alVvdVk~G~gaf~~~~de~~~la~t~v 225 (440)
T 2tpt_A 151 VAIIGQTSSLAPADK--RFYATRDITATVDSI-PLITASILAKKLAE-GL-DALVMDVKVGSGAFMPTYELSEALAEAIV 225 (440)
T ss_dssp EEEEECCTTBSHHHH--HHHHHHHHTTCCCCH-HHHHHHHHHHHHTT-CC-SEEEEEEEESTTSSSSSHHHHHHHHHHHH
T ss_pred EEEEcCchhhCHHHH--HHHHHHHhhCCccCh-hhcCCHHHHHHHhc-CC-CeEEEEeccCCccccCCHHHHHHHHHHHH
Confidence 112100245666543 334444332344333 22221 2222111 11 1235677 88753 44443322211111
Q ss_pred HHHhhcCCeE
Q 008923 318 AVRSCYGESC 327 (548)
Q Consensus 318 iVaAaaGv~V 327 (548)
.+....|.+.
T Consensus 226 ~~~~~~G~~~ 235 (440)
T 2tpt_A 226 GVANGAGVRT 235 (440)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHHcCCce
Confidence 2235677765
No 48
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=43.85 E-value=22 Score=37.82 Aligned_cols=132 Identities=12% Similarity=0.084 Sum_probs=73.9
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhC--C--
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL--P-- 181 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~l--p-- 181 (548)
.+++|+.||+.-+++.|+. |.++..|+|||.-|+-+|+ . |.+|.+.+..--......+ |
T Consensus 12 ~g~~Lt~eEa~~~~~~i~~---------G~~sd~QiaAfL~Alr~kG---e-----t~eEiag~a~AM~~~~~~v~~~~~ 74 (433)
T 1brw_A 12 DGKALTKEEIEWIVRGYTN---------GDIPDYQMSALAMAIYFRG---M-----TEEETAALTMAMVQSGEMLDLSSI 74 (433)
T ss_dssp TTCCCCHHHHHHHHHHHHT---------TSSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHHTSCCCCCTTS
T ss_pred cCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCcCCcccc
Confidence 4789999998888888652 4677789999999999999 5 7777665443222111122 2
Q ss_pred -CceEEEeCCCCCccccCCCC---------CCCC--CCCCC--ccCcHHHHHHHH-hcCCCCCHHHHHHHHHHhccCccC
Q 008923 182 -PDVIFIADPEGSIMGGGGSI---------GPHY--SGNDP--REMRLVGALREV-LAGGHLGYEEVQGVLRDVLPLQVD 246 (548)
Q Consensus 182 -~~~~f~a~p~g~iMg~~~~~---------g~~~--~~~~~--~~~~~~~~L~kL-~~G~~LS~eEA~~am~~IL~~~~~ 246 (548)
.++.=+++.=|+ |-+-++ |+.- .+++- ...--.+.|+.| +-.-+|+.+|+.+.++..= +-+-
T Consensus 75 ~~~~vD~~gTGGd--G~~iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaL~Gv~i~ls~e~~~~~l~~~G-i~fl 151 (433)
T 1brw_A 75 RGVKVDKHSTGGV--GDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEISKDEFIRLVNENG-IAII 151 (433)
T ss_dssp CSCCEEEEECCCS--SCCHHHHHHHHHHTTTCCEEEEECCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHHS-EEEE
T ss_pred cCCceeeCCCCCC--CcchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHCcCceecCCHHHHHHHHHHcC-eeEe
Confidence 123333333322 111111 2210 01111 111134777777 6667899999999998752 1221
Q ss_pred CCCCCCCHHHH
Q 008923 247 NKAPGVSESLL 257 (548)
Q Consensus 247 ~~~G~~sdaQi 257 (548)
.-.....|+-.
T Consensus 152 ~a~~~~hPA~k 162 (433)
T 1brw_A 152 GQTGDLTPADK 162 (433)
T ss_dssp ECCTTSCHHHH
T ss_pred cCchhhCHHHH
Confidence 00245777643
No 49
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=42.93 E-value=1.3e+02 Score=29.97 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCC---CC-
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP---PV- 290 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i---~~- 290 (548)
+.+.++++..|+.++.+-.+++-+.++ ..+++..-.-.|+-.++- .+++-...+.+.+.+.+.+. ..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~L~-------~~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~ 100 (306)
T 1vma_A 30 FFGRVVKLLKGKKLDDETREELEELLI-------QADVGVETTEYILERLEE--KDGDALESLKEIILEILNFDTKLNVP 100 (306)
T ss_dssp THHHHHHHHTTCCCCHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHTT--CCSCHHHHHHHHHHHHTCSCCCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHhCCCCCCccc
Confidence 455677777766899877788888888 788999888888887765 33332233455555544332 11
Q ss_pred -CCCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCC
Q 008923 291 -ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 334 (548)
Q Consensus 291 -~~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRs 334 (548)
.....+-++|.+|.||+|+-.. .|..++..|-+|..-+.+-
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~---LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGK---LAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHH---HHHHHHHTTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHH---HHHHHHhcCCEEEEEcccc
Confidence 1123667899999999764322 2223345688888776553
No 50
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=42.37 E-value=25 Score=37.54 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=79.3
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhCC-----
Q 008923 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALP----- 181 (548)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~lp----- 181 (548)
+++|+.|||.-.++.|+. |.++..|+|||+-|+-+|+ . |.+|...+..--......++
T Consensus 16 g~~Lt~eEa~~~~~~i~~---------G~~sd~QiaAfL~Alr~kG---e-----t~eEiag~~~Am~~~~~~~~~~~~~ 78 (436)
T 3h5q_A 16 GHTLTTEEINFFIGGYVK---------GDIPDYQASSLAMAIYFQD---M-----NDDERVALTMAMVNSGDMIDLSDIK 78 (436)
T ss_dssp TCCCCHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHTTSCCCCCTTSC
T ss_pred CCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcCCccccC
Confidence 489999998888888653 3567789999999999999 4 66665544332111111221
Q ss_pred CceEEEeCCCCCccccCCCC-----------CCCC--CCCCC--ccCcHHHHHHHH-hcCCCCCHHHHHHHHHHhccCcc
Q 008923 182 PDVIFIADPEGSIMGGGGSI-----------GPHY--SGNDP--REMRLVGALREV-LAGGHLGYEEVQGVLRDVLPLQV 245 (548)
Q Consensus 182 ~~~~f~a~p~g~iMg~~~~~-----------g~~~--~~~~~--~~~~~~~~L~kL-~~G~~LS~eEA~~am~~IL~~~~ 245 (548)
..+.=+++.-|+ +.++ |+.- .+++- ...--.+.|+.| .-.-+++.+|+.+.++..= +-+
T Consensus 79 ~~~vD~~gTGGd----G~~tSt~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaLpGi~~~ls~e~~~~~l~~~g-~~f 153 (436)
T 3h5q_A 79 GVKVDKHSTGGV----GDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEATFVKLVNENK-VAV 153 (436)
T ss_dssp SCCEEEEECCCT----TCCHHHHHHHHHHHTTCCEEEECCCCSSSSCCHHHHHTTSTTCCCCCCHHHHHHHHHHHS-EEE
T ss_pred CCceeecCCCCC----CCChHHHHHHHHHhCCCCEEeECCCCCCCcccHHHHHHhCcCCCCCCCHHHHHHHHHHcC-CEE
Confidence 122222333222 2222 2210 01111 111245677777 6666899999999998652 222
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCHHHH
Q 008923 246 DNKAPGVSESLLSAFLIGQRMNRETDREL 274 (548)
Q Consensus 246 ~~~~G~~sdaQigAFLiaLR~KGET~eEI 274 (548)
-.......|+.. .|..+|-.=-|.+-+
T Consensus 154 l~~a~~~~Pa~~--~l~~lR~~~~Tvfni 180 (436)
T 3h5q_A 154 VGQSGNLTPADK--KLYALRDVTGTVNSI 180 (436)
T ss_dssp ECCCSSSCHHHH--HHHHHHHTTTCSSCH
T ss_pred EccccccCHHHH--HHHHHHhccCCcCCh
Confidence 211356777532 345555332355555
No 51
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=42.05 E-value=6.2 Score=36.30 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=30.0
Q ss_pred ceeeCCCCCCCCChhhhh---hhHHHHHHHh-hcCCCccc-cccHHHHhHHHH
Q 008923 99 KVCTGPTQTRPLREDEAF---KVLDTILRSA-KGDLKDEE-EVSKAQLGAFFS 146 (548)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~---~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffg 146 (548)
.|++ ||++.|....... ..++. |+++ ...+|++| |.|+|.|+..+|
T Consensus 45 glil-pG~g~~~~~~~~l~~~~~~~~-i~~~~~~~~PilGIC~G~Qll~~~~g 95 (201)
T 1gpw_B 45 LLFI-PGVGHFGEGMRRLRENDLIDF-VRKHVEDERYVVGVCLGMQLLFEESE 95 (201)
T ss_dssp EEEE-CCCSCSHHHHHHHHHTTCHHH-HHHHHHTTCEEEEETHHHHTTSSEET
T ss_pred EEEE-CCCCcHHHHHHHHHhhCHHHH-HHHHHHcCCeEEEEChhHHHHHHhhc
Confidence 3555 6666654110100 14455 6666 56799999 999999999986
No 52
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.43 E-value=26 Score=37.28 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=66.8
Q ss_pred CCCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhCCC-
Q 008923 104 PTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPP- 182 (548)
Q Consensus 104 p~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~lp~- 182 (548)
...++.|+.||+.-+++.|+. |.++..|+|||+-|+-+|+ . |.+|.+.+..--......++.
T Consensus 10 ~~~g~~Lt~eEa~~~~~~i~~---------G~~~d~QiaAfL~Al~~kG---e-----t~eEiag~a~aM~~~~~~l~~~ 72 (423)
T 2dsj_A 10 KREGKKHRREDLEAFLLGYLR---------DEVPDYQVSAWLMAAFLRG---L-----DPEETLWLTETMARSGKVLDLS 72 (423)
T ss_dssp HHTTCCCCHHHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHTSSBCCCCT
T ss_pred HhcCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCcCCcc
Confidence 346789999998877777542 3667789999999999999 6 777766554322211112211
Q ss_pred ---ceEEEeCCCCCccccCCCC-----------CCCC--CCCCCc--cCcHHHHHHHH-hcCCCCCHHHHHHHHHHh
Q 008923 183 ---DVIFIADPEGSIMGGGGSI-----------GPHY--SGNDPR--EMRLVGALREV-LAGGHLGYEEVQGVLRDV 240 (548)
Q Consensus 183 ---~~~f~a~p~g~iMg~~~~~-----------g~~~--~~~~~~--~~~~~~~L~kL-~~G~~LS~eEA~~am~~I 240 (548)
.+.=+++.=|+ |. ++ |+.- .+++-. ..--.+.|+.| +-.-+++.||+++.++..
T Consensus 73 ~~~~~vD~~gTGGd--G~--niSt~~a~vvAa~Gv~VaKhGnR~~ss~~GsaDvLEaL~Gv~i~l~~e~~~~~l~~~ 145 (423)
T 2dsj_A 73 GLPHPVDKHSSGGV--GD--KVSLVVGPILAASGCTFAKMSGRGLAHTGGTIDKLESVPGWRGEMTEAEFLERARRV 145 (423)
T ss_dssp TSSSBEEEEEESSS--CC--STHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHT
T ss_pred ccCCceeEecCCCC--Cc--cHHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHhCCCCCCCCCHHHHHHHHHHc
Confidence 11111211111 11 23 2200 111111 11145677777 666789999999999875
No 53
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=40.97 E-value=29 Score=37.47 Aligned_cols=145 Identities=15% Similarity=0.122 Sum_probs=80.8
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHhhhC--CC-
Q 008923 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL--PP- 182 (548)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~l--p~- 182 (548)
.++.|+.||+.-+++.|+. |.++..|+|||.-|+-+|+ . |.+|.+.+..--......+ |.
T Consensus 39 ~g~~Lt~eEa~~~~~~i~~---------G~~sd~QiaAfLmAlr~kG---e-----T~eEiag~a~AMr~~~~~v~~~~~ 101 (474)
T 1uou_A 39 DGGRLSEADIRGFVAAVVN---------GSAQGAQIGAMLMAIRLRG---M-----DLEETSVLTQALAQSGQQLEWPEA 101 (474)
T ss_dssp TTCCCCHHHHHHHHHHHHH---------TCSCHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHTTSCCCCCCGG
T ss_pred cCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCcCCcccc
Confidence 5789999998888888653 4667789999999999999 5 7777665443221111122 21
Q ss_pred ---ceEEEeCCCCCccccCCCC-----------CCCC--CCCCC--ccCcHHHHHHHH-hcCCCCCHHHHHHHHHHhccC
Q 008923 183 ---DVIFIADPEGSIMGGGGSI-----------GPHY--SGNDP--REMRLVGALREV-LAGGHLGYEEVQGVLRDVLPL 243 (548)
Q Consensus 183 ---~~~f~a~p~g~iMg~~~~~-----------g~~~--~~~~~--~~~~~~~~L~kL-~~G~~LS~eEA~~am~~IL~~ 243 (548)
.+.=+++.=|+ +.++ |+.- .+++- ...--.+.|+.| .-.-+|+.+|+.+.++..= +
T Consensus 102 ~~~~~vD~~gTGGd----G~~iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GSaDvLEaLpGv~i~ls~e~~~~~l~~~G-i 176 (474)
T 1uou_A 102 WRQQLVDKHSTGGV----GDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQAG-C 176 (474)
T ss_dssp GGGGBEEEEESCCT----TCCHHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHHS-E
T ss_pred cCCCeeEeCCCCCC----CceeHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCCCCCCCHHHHHHHHHHcC-e
Confidence 23323333322 1122 2210 01111 111244778878 6667899999999998752 2
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCHHHH
Q 008923 244 QVDNKAPGVSESLLSAFLIGQRMNRETDREL 274 (548)
Q Consensus 244 ~~~~~~G~~sdaQigAFLiaLR~KGET~eEI 274 (548)
-+-.-.....|+-. .+.++|-.=-|..-+
T Consensus 177 ~fl~a~~~~hPA~k--~l~~lR~~lrTvfNi 205 (474)
T 1uou_A 177 CIVGQSEQLVPADG--ILYAARDVTATVDSL 205 (474)
T ss_dssp EEECCCSSSSHHHH--HHHHHHHHTTCSSCH
T ss_pred EEecCchhhCHHHH--HHHHHHhhhCCccch
Confidence 22100245777644 335555332244433
No 54
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=40.05 E-value=1.2e+02 Score=30.40 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=68.8
Q ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhc--CCCH-HHHH-HHHHHHHhhCC---
Q 008923 215 LVGALREVLAG-GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--RETD-RELK-AYCLAFDDELG--- 286 (548)
Q Consensus 215 ~~~~L~kL~~G-~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~K--GET~-eEIa-Gfa~Amr~~~~--- 286 (548)
+...++++..+ ..++.+-.+++-..++ ..++...-.-.|+-.++-+ ++.. +.+. .+.+.+.+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~-------~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (320)
T 1zu4_A 18 FSKDIKKLSKKYKQADDEFFEELEDVLI-------QTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDND 90 (320)
T ss_dssp HHHHHHHHHHTCCCCSHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCccc
Confidence 55677788777 6799887788888888 7889999998998888653 4322 2211 12222322221
Q ss_pred ------CCCC--CCCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCC
Q 008923 287 ------PPPV--ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 334 (548)
Q Consensus 287 ------~i~~--~~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRs 334 (548)
.+.. .....+-++|.+|.||+|+-. . .|..++..|-+|..-+.+-
T Consensus 91 ~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~--~-LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 91 WTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLA--K-MANYYAELGYKVLIAAADT 143 (320)
T ss_dssp C----CCCCCCTTSCEEEEEESSTTSSHHHHHH--H-HHHHHHHTTCCEEEEECCC
T ss_pred ccccccCccccCCCCeEEEEECCCCCCHHHHHH--H-HHHHHHHCCCeEEEEeCCC
Confidence 2222 122467789999999876422 2 2334456788998877653
No 55
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=39.07 E-value=4.7 Score=36.58 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=59.4
Q ss_pred cceeeCCCC-CCCCChhhhhhhHHHHHHHh-hcC-CCccc-cccHHHHhHHHHh-hh----------hccccCCCCCcCC
Q 008923 98 AKVCTGPTQ-TRPLREDEAFKVLDTILRSA-KGD-LKDEE-EVSKAQLGAFFSA-MT----------IRANAFPEATQWS 162 (548)
Q Consensus 98 ~~v~~gp~~-~~P~~~~~a~~~~~~~l~~~-~~~-l~~~~-~~~~~q~gaffga-~~----------~r~~~~p~~~~~s 162 (548)
-.|++++++ +.|.........++. |+++ ... .|++| |.|+|.|+..+|+ .. ++-+.|.+....-
T Consensus 41 dglil~GG~~~~~~~~~~~~~~~~~-i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~lg~~~~~~~~~~~g~~~~~~ 119 (191)
T 2ywd_A 41 KALIVPGGESTTIGKLAREYGIEDE-VRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERNAFGRQVESF 119 (191)
T ss_dssp SEEEECSSCHHHHHHHHHHTTHHHH-HHHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCCCCEEEEEETTCSCCSSSEE
T ss_pred CEEEECCCChhhhHHhhhhhhHHHH-HHHHHHCCCCeEEEECHHHHHHHHHhCCCCCCccccccceEEEcCCcCCccccc
Confidence 457777773 221111102334555 6666 356 99999 9999999999998 32 1111221110000
Q ss_pred HHH--HHHHHh----hhhHH-hhhCCCceEEEeCCCCCccccCCCC--CCCCCCCC
Q 008923 163 EGE--RRAMNT----FWPLL-MRALPPDVIFIADPEGSIMGGGGSI--GPHYSGND 209 (548)
Q Consensus 163 ~~e--~~~~~~----~~~~l-~~~lp~~~~f~a~p~g~iMg~~~~~--g~~~~~~~ 209 (548)
+.+ -..+.. ++-.. ++.+|+++.++|..||.++|++++. |.+|.|..
T Consensus 120 ~~~~~~~~~~~~~~~~~Hs~~v~~l~~~~~~~a~~~~~~~a~~~~~~~gvQfHPE~ 175 (191)
T 2ywd_A 120 EEDLEVEGLGSFHGVFIRAPVFRRLGEGVEVLARLGDLPVLVRQGKVLASSFHPEL 175 (191)
T ss_dssp EEEEEETTTEEEEEEEESCCEEEEECTTCEEEEEETTEEEEEEETTEEEESSCGGG
T ss_pred cccccccCCCceeEEEEcccceeccCCCcEEEEEECCEEEEEEECCEEEEEeCCCC
Confidence 000 000111 11111 1357888888873368899999876 77886653
No 56
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=39.01 E-value=28 Score=30.44 Aligned_cols=67 Identities=7% Similarity=0.052 Sum_probs=51.7
Q ss_pred ccCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhC
Q 008923 211 REMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (548)
Q Consensus 211 ~~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~ 285 (548)
++.+...+|.-|. +.||.+|..++...++. +|.+++..|+++..-+.-.-.|+++|.-...-+...-
T Consensus 24 P~~Dy~PLlALL~--r~Ltdeev~~Va~~L~~------~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~G 90 (103)
T 2kvc_A 24 PPTDSFAVLALLC--RRLSHDEVKAVANELMR------LGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQG 90 (103)
T ss_dssp CHHHHHHHHHHHT--TTSCHHHHHHHHHHHHH------HTSSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGGGC
T ss_pred CCcchHHHHHHHh--ccCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 3344444444333 47999999999999983 6779999999999999888899999988777665544
No 57
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=36.70 E-value=74 Score=28.11 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHhccCccCCC----CCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCC
Q 008923 226 GHLGYEEVQGVLRDVLPLQVDNK----APGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGP 287 (548)
Q Consensus 226 ~~LS~eEA~~am~~IL~~~~~~~----~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~ 287 (548)
+.||.||..++...++. +.. ++.++..+|+.+..-..-.-.|+++|.-.+.-+-..-=+
T Consensus 39 R~LtdeEV~~Va~~L~~---~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~GWP 101 (112)
T 2m0n_A 39 RTLTEEQVQEVVAKLTD---PESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAGGWP 101 (112)
T ss_dssp SSCCHHHHHHHHHHHTC---TTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHCCTT
T ss_pred ccCCHHHHHHHHHHHHh---ccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhcCCC
Confidence 45999999999999982 111 234889999999999999999999999887777654433
No 58
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=33.16 E-value=26 Score=36.36 Aligned_cols=170 Identities=12% Similarity=0.046 Sum_probs=94.0
Q ss_pred HHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCC----ccc---cchHHHHHHHhh
Q 008923 257 LSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT----RFF---RSTLFVAAVRSC 322 (548)
Q Consensus 257 igAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~~----tfN---iST~laAiVaAa 322 (548)
..+++.++-.+|+| .+++...+++|++.-..+...+ .+.+-|.++.+.. ... -++.+++.+++.
T Consensus 26 ~r~Llaa~la~g~t~i~n~~~~~dv~~t~~~L~~lGa~i~~~~--~~~I~~~~~~~~~~~~d~~~~~ras~~l~~alla~ 103 (419)
T 1ejd_A 26 LPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERXG--SVWIDASNVNNFSAPYDLVKTMRASIWALGPLVAR 103 (419)
T ss_dssp HHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS--SEEEECTTCCCCEECHHHHTTCGGGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCcHHHHHHHHHHHHCCCEEEEcc--eEEEecCCCCCCcCchHHhhhhhHHHHHHHHHhhc
Confidence 45566666667743 5788888999998776654322 4445455442111 011 222334445555
Q ss_pred cC-CeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEecccccchhhhhHHHhhcccCCCCccc
Q 008923 323 YG-ESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVA 401 (548)
Q Consensus 323 aG-v~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~ 401 (548)
.| +.|...|+.++..+--..+-|.|++||++++. + .|...+-.. ..+.+.+=.+...+.-.
T Consensus 104 ~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~----------~--~g~~~v~~~------~~L~g~~i~~~~~s~~~ 165 (419)
T 1ejd_A 104 FGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKL----------E--EGYVKASVN------GRLKGAHIVMDKVSVGA 165 (419)
T ss_dssp HSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEE----------E--TTEEEEECS------SSCBCCEEECSSCCHHH
T ss_pred CCceEEEecCCcccCCCchHHHHHHHHHCCCEEEE----------c--CCEEEEEEc------CCccceEEecCCCCHHH
Confidence 45 68888999988776554578999999998752 1 232212111 01111111222222111
Q ss_pred cchhhhhhhccc-CCCeEEEeecCCCchHHHHHHHHHcCCC------eEEEEEc
Q 008923 402 TSEKVQQFVRAQ-GREAIVAGFYHEGYEEPLLMLMKRRGVH------SGLVVKG 448 (548)
Q Consensus 402 npak~l~~LNPa-~a~~qViGVfh~~~~e~~Aeal~~lG~~------~alVV~G 448 (548)
++.-+ ++.+. .-.-.+.++.++++.+.+++.|+++|.+ ..++|+|
T Consensus 166 ~~~ll--~aa~~a~G~t~I~~~~~e~~i~~t~~~L~~~Ga~i~~~~~~~i~I~g 217 (419)
T 1ejd_A 166 TVTIM--SAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEG 217 (419)
T ss_dssp HHHHH--HHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEEC
T ss_pred HHHHH--HHHhcCCCcEEEEeCCCCchHHHHHHHHHHCCCEEEEccCCEEEEeC
Confidence 12111 22332 1233466888888999999999999974 2355565
No 59
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=27.73 E-value=4.8e+02 Score=27.20 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=85.5
Q ss_pred cHHHHHHHHhcCCCCCH----HHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcC--------CCHHH-HHHH-HH
Q 008923 214 RLVGALREVLAGGHLGY----EEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--------ETDRE-LKAY-CL 279 (548)
Q Consensus 214 ~~~~~L~kL~~G~~LS~----eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KG--------ET~eE-IaGf-a~ 279 (548)
.+...++++.....|+. +-.+++...++ +.++.....-.|...++.+. .++.+ +... .+
T Consensus 7 ~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll-------~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~ 79 (432)
T 2v3c_C 7 NLNKALNKLKAAAFVDKKLIKEVIKDIQRALI-------QADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE 79 (432)
T ss_dssp HHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHH-------HTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHH
Confidence 36677888876667886 34456667777 77888888888887777542 34444 3322 22
Q ss_pred HHHhhCCC----CCCC--CCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCC
Q 008923 280 AFDDELGP----PPVA--DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAS 353 (548)
Q Consensus 280 Amr~~~~~----i~~~--~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~ 353 (548)
.+.+.+.. +... ....|-++|.+|.|++|+-.. .|..++..|.+|+.-..+...+..--.+....+..|++
T Consensus 80 ~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~---La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~ 156 (432)
T 2v3c_C 80 ELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAK---LARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 156 (432)
T ss_dssp HHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHH---HHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCC
T ss_pred HHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHH---HHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcc
Confidence 33333322 2121 123677999999999864333 22233455888887655433221100012222334554
Q ss_pred C------CCCHH-HHHHHHHh-ccCceEEecccccchh
Q 008923 354 T------NLSVL-QAKELLED-EEIGFAYVSLREARPS 383 (548)
Q Consensus 354 i------~lspe-~a~~~Lee-~~~GfaFL~Ap~~hPa 383 (548)
+ ..+|. -+.+.++. .+.-+.++.-|-+++.
T Consensus 157 v~~~~~~~~dp~~i~~~~l~~~~~~D~vIIDT~G~~~~ 194 (432)
T 2v3c_C 157 IYGDETRTKSPVDIVKEGMEKFKKADVLIIDTAGRHKE 194 (432)
T ss_dssp EECCSSSCCSSSTTHHHHHHTTSSCSEEEEECCCSCSS
T ss_pred eEecCCCCCCHHHHHHHHHHHhhCCCEEEEcCCCCccc
Confidence 2 11221 11222222 1267888888877663
No 60
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.40 E-value=47 Score=26.37 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=30.2
Q ss_pred CCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEecccccchh
Q 008923 338 KGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 383 (548)
Q Consensus 338 ksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL~Ap~~hPa 383 (548)
.++. .|.++-||++...+.+++++...+ .+..|||-
T Consensus 5 ~~~~--~~~y~iLgv~~~as~~eIk~ayr~--------l~~~~HPD 40 (82)
T 2ej7_A 5 SSGM--VDYYEVLDVPRQASSEAIKKAYRK--------LALKWHPD 40 (82)
T ss_dssp CSSS--CCHHHHTTCCTTCCHHHHHHHHHH--------HHTTSCTT
T ss_pred CCCC--cCHHHHcCCCCCCCHHHHHHHHHH--------HHHHHCcC
Confidence 3455 789999999999999999999998 36678885
No 61
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=23.54 E-value=1.2e+02 Score=32.05 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHHHH-HhhhcC-----------CCHHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCCcccc-----
Q 008923 249 APGVSESLLSAFLI-GQRMNR-----------ETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFR----- 311 (548)
Q Consensus 249 ~G~~sdaQigAFLi-aLR~KG-----------ET~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~~tfNi----- 311 (548)
++++|--.+++||+ |...+| .+..|+...++.|++.-..+.......+-+-|..+.|. .+.+
T Consensus 163 ~~d~Ssq~~salllAA~~~~g~~~I~~~~~~~~s~p~i~~t~~~L~~~Ga~I~~~~~~~i~I~g~~l~g~-~~~v~~D~s 241 (450)
T 2o0b_A 163 DASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNRWQVRPGPVAAR-RWDIEPDLT 241 (450)
T ss_dssp CCTTCTHHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCSTTEEEECCCCCCCC-CEECCBCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCcCCCcHHHHHHHHHHHCCCeEEecCCcEEEEECCCCcCc-eEEcCCCHH
Confidence 56666666677776 444544 26677888888888877666422113455544344432 2333
Q ss_pred --chHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC
Q 008923 312 --STLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (548)
Q Consensus 312 --ST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~l 356 (548)
++.++| +|-+|=.|...|-...+-+.+....++|++||+++..
T Consensus 242 ~A~~~laa--aa~~~g~v~i~~v~~~~~q~~~~i~~~L~~mGa~i~~ 286 (450)
T 2o0b_A 242 NAVAFLSA--AVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIH 286 (450)
T ss_dssp HHHHHHHH--HHHHTCEEEETTCCSSCSSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHH--HHhcCCeEEECCCCcccccchHHHHHHHHHcCCeEEE
Confidence 333222 2223556888886665555443358999999999863
No 62
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=22.99 E-value=3.9e+02 Score=27.94 Aligned_cols=154 Identities=8% Similarity=-0.013 Sum_probs=94.4
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCC----CCC---------CCCcHHHHHHhCCCCCCCCHHH
Q 008923 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWM----PPK---------GGVTEEQMLKFMGASTNLSVLQ 360 (548)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsv----sSk---------sGSt~ADvLEaLGi~i~lspe~ 360 (548)
++.-|...|..-.+.....-- .+-.++.+|+.++|.+-+-. ++. +|+++-|+++.++...+ ....
T Consensus 28 ~~~IIAEiG~NH~Gsle~A~~-li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e-~~~~ 105 (385)
T 1vli_A 28 PVFIIAEAGINHDGKLDQAFA-LIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAE-WILP 105 (385)
T ss_dssp CCEEEEEEETTTTTCHHHHHH-HHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGG-GHHH
T ss_pred CcEEEEeecCcccccHHHHHH-HHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHH-HHHH
Confidence 345566556666666666655 55667889999999986543 221 24445589998877643 4567
Q ss_pred HHHHHHhccCceEEecccccchhhhhHHHh-hcccCCCC-ccccchhhhhhhcccCCCeEE-EeecCCCchHHHHHHHHH
Q 008923 361 AKELLEDEEIGFAYVSLREARPSLYSLIGL-REHIKKRP-PVATSEKVQQFVRAQGREAIV-AGFYHEGYEEPLLMLMKR 437 (548)
Q Consensus 361 a~~~Lee~~~GfaFL~Ap~~hPamk~l~~i-Rk~LGvRT-PL~npak~l~~LNPa~a~~qV-iGVfh~~~~e~~Aeal~~ 437 (548)
..+.-++ .|+.|+.-|.--.++..+..+ =..+++.+ -++|. .+++.+.-.+.+..+ +|....+=.+.-++.++.
T Consensus 106 L~~~~~~--~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~-pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~ 182 (385)
T 1vli_A 106 LLDYCRE--KQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHL-PLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRA 182 (385)
T ss_dssp HHHHHHH--TTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCH-HHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHH--cCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCH-HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 7777778 999999888888888877665 24455555 33333 233333333333322 266422222333566677
Q ss_pred cCCCeEEEEEcCCCc
Q 008923 438 RGVHSGLVVKGEEGA 452 (548)
Q Consensus 438 lG~~~alVV~G~eG~ 452 (548)
.|.+..++.|+..+.
T Consensus 183 ~Gn~~iiLlhc~s~Y 197 (385)
T 1vli_A 183 EGNNQIAIMHCVAKY 197 (385)
T ss_dssp TTCCCEEEEEECSSS
T ss_pred CCCCcEEEEeccCCC
Confidence 787778888886553
No 63
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=22.89 E-value=2.4e+02 Score=27.35 Aligned_cols=113 Identities=20% Similarity=0.122 Sum_probs=77.6
Q ss_pred cCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEecc---c-ccchhhhhHHHhhcccCCCC
Q 008923 323 YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL---R-EARPSLYSLIGLREHIKKRP 398 (548)
Q Consensus 323 aGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL~A---p-~~hPamk~l~~iRk~LGvRT 398 (548)
.|..|.---.|+.||| |. ++- .+|.+..+..++ .|...+.. + .|.....++..+|+..+++-
T Consensus 44 ~~~~~IaE~k~aSPsk-g~----------i~~-~~p~~~A~~~~~--~GA~~isvlt~~~~f~G~~~~l~~i~~~v~lPv 109 (254)
T 1vc4_A 44 PGLSVIAEVKRQSPSE-GL----------IRE-VDPVEAALAYAR--GGARAVSVLTEPHRFGGSLLDLKRVREAVDLPL 109 (254)
T ss_dssp SSCEEEEEECSCCTTT-CC----------CCS-CCHHHHHHHHHH--TTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCE
T ss_pred cCCcEEeeecCCCcCC-Cc----------CCC-CCHHHHHHHHHH--cCCCEEEEecchhhhccCHHHHHHHHHhcCCCE
Confidence 3788887778988876 54 454 689999999999 66655544 3 45568889999999877642
Q ss_pred ----ccccchhhhhhhcccCCCeEEEeecCC-CchHHHHHHHHHcCCCeEEEEEcCC
Q 008923 399 ----PVATSEKVQQFVRAQGREAIVAGFYHE-GYEEPLLMLMKRRGVHSGLVVKGEE 450 (548)
Q Consensus 399 ----PL~npak~l~~LNPa~a~~qViGVfh~-~~~e~~Aeal~~lG~~~alVV~G~e 450 (548)
++.++..+. ..-.+|++..++|...- +..+.+.+..+.+|.+--+-||+.+
T Consensus 110 l~kdfI~d~~qi~-~a~~~GAD~VlL~~~~l~~~l~~l~~~a~~lGl~~lvev~~~~ 165 (254)
T 1vc4_A 110 LRKDFVVDPFMLE-EARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTER 165 (254)
T ss_dssp EEESCCCSHHHHH-HHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEECSHH
T ss_pred EECCcCCCHHHHH-HHHHcCCCEEEECccchHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 566665542 24568899999988643 3444455555588976555567753
No 64
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=22.37 E-value=1.4e+02 Score=30.94 Aligned_cols=101 Identities=17% Similarity=0.081 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCC----cc---ccchH--HHHH
Q 008923 255 SLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT----RF---FRSTL--FVAA 318 (548)
Q Consensus 255 aQigAFLiaLR~KGET-------~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~~----tf---NiST~--laAi 318 (548)
++.-+++++.-.+|+| .+++...+++|++.-..+...+ ..+.+-|.+..+.. .. |-.|+ |.+-
T Consensus 22 ~t~r~Llaa~La~g~t~I~n~~~s~Dv~~~~~~L~~lG~~i~~~~-~~~~I~g~~~~~~~~p~~~id~~~sgt~~rll~a 100 (427)
T 1rf6_A 22 ISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKD-GVITVQGVGMAGLKAPQNALNMGNSGTSIRLISG 100 (427)
T ss_dssp HHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEET-TEEEEECCCSSCCCCCSSCEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEccCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEECCCCCCcCCCcceeeccccchHHHHHHH
Confidence 3446677777777732 3678888999998776654221 23455454321111 11 12222 3344
Q ss_pred HHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC
Q 008923 319 VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (548)
Q Consensus 319 VaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~l 356 (548)
+++..+..|...|...+..+-=..+-|.|++||++++.
T Consensus 101 ~la~~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~ 138 (427)
T 1rf6_A 101 VLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISG 138 (427)
T ss_dssp HGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEE
T ss_pred HHhcCCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEE
Confidence 44556689999999887765433469999999998753
No 65
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=21.90 E-value=2.6e+02 Score=21.15 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcC
Q 008923 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR 268 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KG 268 (548)
++.+++.+ |..++.+|+..+|..+= ...+|.++-.+.-.++...+-..
T Consensus 31 l~~~l~~~--g~~~~~~~~~~l~~~~d----~~~dg~i~~~eF~~~~~~~~~~~ 78 (92)
T 2kn2_A 31 LRHVMINL--GEKLTDEEVEQMIKEAD----LDGDGQVNYEEFVKMMMTVRGGG 78 (92)
T ss_dssp HHHHHHHT--TCCCCHHHHHHHHHHHC----SSCCSSEEHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh--CCCCCHHHHHHHHHHhC----CCCCCcEeHHHHHHHHHhccCCC
Confidence 66666665 67899999999998873 12367888888777776655443
No 66
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=21.79 E-value=11 Score=35.48 Aligned_cols=111 Identities=6% Similarity=-0.034 Sum_probs=58.9
Q ss_pred cceeeCCCCCCCCChhh-hhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhcccc-CCCCCcCCHHHH-------
Q 008923 98 AKVCTGPTQTRPLREDE-AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANA-FPEATQWSEGER------- 166 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~-a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~-~p~~~~~s~~e~------- 166 (548)
-.|+++.++..+.+... ....++. ||++ ....|++| |.|+|.|+..+|+.+.+.-. +| +..+....
T Consensus 62 Dglil~GG~~~~~~~~~~~~~~~~~-i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~~lg~~~--~~~~~~~~g~~~~~~ 138 (219)
T 1q7r_A 62 DGLVLPGGESTTMRRLIDRYGLMEP-LKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMD--ITVERNSFGRQRESF 138 (219)
T ss_dssp SEEEECCCCHHHHHHHHHHTTCHHH-HHHHHHTTCCEEEETTHHHHHEEEEESSCCCCCCCEE--EEEECHHHHCCCCCE
T ss_pred CEEEECCCChHHHHHHhhhhHHHHH-HHHHHHcCCeEEEECHHHHHHHHHhCCCCcCCcCccc--eEEEecCCCccccce
Confidence 34666666532221100 1122455 6665 56799999 99999999999986522100 00 00000000
Q ss_pred ---HHHHhh--------hh-HHhhhCCCceEEEeCCCCCccccCCCC--CCCCCCCCCc
Q 008923 167 ---RAMNTF--------WP-LLMRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPR 211 (548)
Q Consensus 167 ---~~~~~~--------~~-~l~~~lp~~~~f~a~p~g~iMg~~~~~--g~~~~~~~~~ 211 (548)
..+..+ +- ..++.+|+++.++|..||.++|++++. |++|.|....
T Consensus 139 ~~~~~~~g~g~~~~~~~~h~~~v~~l~~~~~v~a~sdg~~ea~~~~~i~GvQfHPE~~~ 197 (219)
T 1q7r_A 139 EAELSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATYNDRIVAARQGQFLGCSFHPELTD 197 (219)
T ss_dssp EEEEEETTTEEEEEEEESSCCEEEEECTTCEEEEEETTEEEEEEETTEEEESSCGGGSS
T ss_pred ecCcccCCCCCceEEEEEecceeeccCCCcEEEEEcCCEEEEEEECCEEEEEECcccCC
Confidence 000000 10 012356888888873389999998754 7788665443
No 67
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=21.66 E-value=12 Score=34.25 Aligned_cols=112 Identities=9% Similarity=0.087 Sum_probs=57.2
Q ss_pred cceeeCCCCCCCCChhh-hhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhcc----------ccCCCCCc-CCH
Q 008923 98 AKVCTGPTQTRPLREDE-AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRA----------NAFPEATQ-WSE 163 (548)
Q Consensus 98 ~~v~~gp~~~~P~~~~~-a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~----------~~~p~~~~-~s~ 163 (548)
-.|+++.++..+-++.. .....+. ||++ ....|++| |.|+|.|+..+|+...+. +.+..... ...
T Consensus 40 d~iil~GG~~~~~~~~~~~~~~~~~-i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~~lg~~~~~~~~~~~g~~~~~~~~ 118 (196)
T 2nv0_A 40 DGLILPGGESTTMRRLIDTYQFMEP-LREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEA 118 (196)
T ss_dssp SEEEECCSCHHHHHHHHHHTTCHHH-HHHHHHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEEECCCSCTTTSEEEE
T ss_pred CEEEECCCChhhHHHHhhhHHHHHH-HHHHHHCCCcEEEECHHHHHHHHHhcCCCCCcccCCceeEeccCCCcccccccC
Confidence 34666556433321110 1223555 5655 56799999 999999999999853211 01100000 000
Q ss_pred HHHHHHHhhhhH---------HhhhCCCceEEEeCCCCCccccCCCC--CCCCCCCCCcc
Q 008923 164 GERRAMNTFWPL---------LMRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPRE 212 (548)
Q Consensus 164 ~e~~~~~~~~~~---------l~~~lp~~~~f~a~p~g~iMg~~~~~--g~~~~~~~~~~ 212 (548)
. ..+..+|.. .+..+|+.+.++|..||.++|++++. |.+|.|....+
T Consensus 119 -~-~~~~~~g~~~~~~~~h~~~v~~~~~~~~v~a~~d~~~~a~~~~~~~gvQfHPE~~~~ 176 (196)
T 2nv0_A 119 -D-LTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFLGCSFHPELTED 176 (196)
T ss_dssp -E-ECCTTCSSCEEEEEESCCEEEEECTTCEEEEEETTEEEEEEETTEEEESSCTTSSSC
T ss_pred -C-cccccCCCceEEEEEecceecccCCCcEEEEEECCEEEEEEECCEEEEEECCccCCc
Confidence 0 000001100 11246778888874478999988754 77887765544
No 68
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=21.38 E-value=53 Score=33.52 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCC---CCCCCCcHH
Q 008923 268 RETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWM---PPKGGVTEE 344 (548)
Q Consensus 268 GET~eEIaGfa~Amr~~~~~i~~~~~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsv---sSksGSt~A 344 (548)
|.+.+||..++ .+...++... +.=..++.|.+|..|. .. .++++..+|++|.--|+=+- .+-.=| +
T Consensus 73 GL~~~eLe~la---~~~~~K~SrR--Dl~~~~a~g~~GaTTV---aa-Tm~lA~~AGI~VFaTGGiGGVHRgt~DIS--a 141 (297)
T 1vkm_A 73 GMSEEELEAMM---REGADKVGTR--EIPIVVAEGKNAATTV---SA-TIFLSRRIGIEVVVTGGTGGVHPGRVDVS--Q 141 (297)
T ss_dssp SCCHHHHHHHH---HHCCEEECGG--GHHHHHHHTCCEEECH---HH-HHHHHHHHTCCEEECSCBCCBCTTSSCBC--H
T ss_pred CCCHHHHHHHh---cCCCccccHh--hHHHHHhCCCCchhhH---HH-HHHHHHHcCCcEEEecccccccCCCcccc--h
Confidence 68899999887 2333333221 2223567888888773 22 56677889999998764221 033446 8
Q ss_pred HHHHh---------CCCCCCCCHHHHHHHHHhccCceEEe-cccccchhhh
Q 008923 345 QMLKF---------MGASTNLSVLQAKELLEDEEIGFAYV-SLREARPSLY 385 (548)
Q Consensus 345 DvLEa---------LGi~i~lspe~a~~~Lee~~~GfaFL-~Ap~~hPamk 385 (548)
|+-|- -|++--++....-+.||. .|+..+ |.....|+++
T Consensus 142 DL~eL~rTpV~VVcaG~KsILDi~~TLE~LET--~GV~Vvgy~t~~fPaF~ 190 (297)
T 1vkm_A 142 DLTEMSSSRAVLVSSGIKSILDVEATFEMLET--LEIPLVGFRTNEFPLFF 190 (297)
T ss_dssp HHHHHTTCCEEEEESBBCTTSCHHHHHHHHHH--TTCCEEEESCSBCCBTT
T ss_pred hHHHhcCCCeEEEecccchhhcchhHHHHHHh--CCceEEEecCCCCCcee
Confidence 88884 577778899999999999 665433 4456777764
No 69
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=20.20 E-value=2.3e+02 Score=29.69 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHH----HHhccCccCCCCCCCCHHHHHHHHHHhhh--cCC------CHH-HH-HHHHHH
Q 008923 215 LVGALREVLAGGHLGYEEVQGVL----RDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE------TDR-EL-KAYCLA 280 (548)
Q Consensus 215 ~~~~L~kL~~G~~LS~eEA~~am----~~IL~~~~~~~~G~~sdaQigAFLiaLR~--KGE------T~e-EI-aGfa~A 280 (548)
+...++++.....|+.+...+++ ..++ ..++...-.-.|+-.++- .|+ ++. ++ ..+.+.
T Consensus 9 l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll-------~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
T 2xxa_A 9 LSRTLRNISGRGRLTEDNVKDTLREVRMALL-------EADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNE 81 (433)
T ss_dssp HHHHHHHSCCCSCCCHHHHHHHHHHHHHHHH-------HHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHH
Confidence 56677777766789986555544 4556 667888888888877754 232 221 11 222333
Q ss_pred HHhhCC----CCCCC--CCCCeeEEcCCCCCCCccccchHHHHHHHhhc-CCeEEeecCCCCCCCCCCcHHHHH----Hh
Q 008923 281 FDDELG----PPPVA--DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCY-GESCLLHGAEWMPPKGGVTEEQML----KF 349 (548)
Q Consensus 281 mr~~~~----~i~~~--~~~~vDi~GTGGDG~~tfNiST~laAiVaAaa-Gv~VaKHGnRsvsSksGSt~ADvL----Ea 349 (548)
+.+.+. ++... ....|-++|.||.|++|+-. - .|..++.. |.+|+.--.+... .+. .+.| +.
T Consensus 82 l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~--~-LA~~l~~~~G~kVllvd~D~~r--~~a--~~ql~~~~~~ 154 (433)
T 2xxa_A 82 LVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVG--K-LGKFLREKHKKKVLVVSADVYR--PAA--IKQLETLAEQ 154 (433)
T ss_dssp HHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHH--H-HHHHHHHTSCCCEEEEECCCSS--TTH--HHHHHHHHHH
T ss_pred HHHHhccccccccccCCCCeEEEEECCCCCCHHHHHH--H-HHHHHHHhcCCeEEEEecCCCC--ccH--HHHHHhhccc
Confidence 333222 22221 12356678999999986422 2 33444556 9999876555322 233 4433 23
Q ss_pred CCCCC-----CCCHHHH-HHHHHh---ccCceEEecccccc
Q 008923 350 MGAST-----NLSVLQA-KELLED---EEIGFAYVSLREAR 381 (548)
Q Consensus 350 LGi~i-----~lspe~a-~~~Lee---~~~GfaFL~Ap~~h 381 (548)
.|+++ ..+|.++ .+.++. .+.-++++..|-.+
T Consensus 155 ~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 155 VGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCC
T ss_pred CCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 45542 2345554 334432 23568888887443
Done!